Query 000519
Match_columns 1448
No_of_seqs 186 out of 205
Neff 4.0
Searched_HMMs 46136
Date Mon Apr 1 17:43:05 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0196 Tyrosine kinase, EPH ( 96.1 0.0054 1.2E-07 77.4 4.9 61 804-877 261-331 (996)
2 PF07699 GCC2_GCC3: GCC2 and G 96.0 0.0043 9.3E-08 53.4 2.3 27 813-841 9-35 (48)
3 PF10256 Erf4: Golgin subfamil 94.2 0.13 2.8E-06 51.7 7.0 67 974-1040 21-91 (118)
4 PF07562 NCD3G: Nine Cysteines 90.8 0.053 1.2E-06 48.2 -0.8 36 803-840 6-51 (54)
5 cd00185 TNFR Tumor necrosis fa 90.6 0.39 8.4E-06 47.1 4.9 65 801-872 12-87 (98)
6 PHA02637 TNF-alpha-receptor-li 89.3 0.33 7.2E-06 50.4 3.4 57 805-866 31-92 (127)
7 PHA02637 TNF-alpha-receptor-li 84.7 0.71 1.5E-05 48.1 2.8 41 797-838 38-87 (127)
8 PF07699 GCC2_GCC3: GCC2 and G 82.9 1 2.2E-05 38.9 2.6 33 798-830 6-43 (48)
9 KOG0921 Dosage compensation co 78.5 4.7 0.0001 53.0 7.2 8 23-30 963-970 (1282)
10 PF05268 GP38: Phage tail fibr 68.8 18 0.00038 41.3 7.8 37 220-257 114-152 (260)
11 PF10256 Erf4: Golgin subfamil 60.6 12 0.00027 37.8 4.5 56 1122-1177 26-106 (118)
12 PTZ00382 Variant-specific surf 59.5 5.9 0.00013 39.5 2.0 24 813-839 4-27 (96)
13 PF15496 DUF4646: Domain of un 57.4 12 0.00026 38.9 3.8 49 1124-1172 45-122 (123)
14 PF15496 DUF4646: Domain of un 56.8 15 0.00031 38.2 4.3 70 979-1049 43-120 (123)
15 cd00185 TNFR Tumor necrosis fa 55.8 11 0.00024 37.1 3.1 38 806-843 1-44 (98)
16 KOG4069 Uncharacterized conser 53.6 34 0.00073 36.3 6.3 80 973-1056 45-137 (154)
17 smart00180 EGF_Lam Laminin-typ 53.6 7.9 0.00017 33.5 1.6 19 806-824 22-40 (46)
18 cd00055 EGF_Lam Laminin-type e 53.5 7.8 0.00017 33.9 1.5 27 797-826 17-43 (50)
19 KOG1836 Extracellular matrix g 53.2 13 0.00028 52.5 4.3 43 798-840 794-838 (1705)
20 KOG0921 Dosage compensation co 52.6 33 0.00072 45.8 7.3 7 151-157 1141-1147(1282)
21 KOG4611 Uncharacterized conser 51.9 18 0.00038 43.4 4.5 65 814-882 51-126 (747)
22 KOG4289 Cadherin EGF LAG seven 49.8 12 0.00026 51.3 2.9 85 1288-1383 2171-2257(2531)
23 KOG3973 Uncharacterized conser 40.7 92 0.002 37.8 7.9 8 298-305 452-459 (465)
24 PF12273 RCR: Chitin synthesis 40.5 26 0.00056 36.3 3.2 21 889-909 2-23 (130)
25 PF00053 Laminin_EGF: Laminin 35.8 15 0.00033 31.7 0.6 21 806-826 22-42 (49)
26 cd00064 FU Furin-like repeats. 32.5 35 0.00076 29.4 2.3 22 804-825 18-42 (49)
27 cd03357 LbH_MAT_GAT Maltose O- 32.4 1.3E+02 0.0028 32.2 6.9 68 90-162 64-145 (169)
28 COG4698 Uncharacterized protei 31.3 36 0.00079 37.9 2.6 53 890-945 14-69 (197)
29 PF14946 DUF4501: Domain of un 30.5 1.2E+02 0.0027 33.5 6.3 29 884-912 83-112 (180)
30 PF05268 GP38: Phage tail fibr 29.0 1.1E+02 0.0023 35.3 5.8 41 255-295 113-158 (260)
31 PRK09677 putative lipopolysacc 28.5 1.3E+02 0.0029 32.9 6.4 65 96-163 31-95 (192)
32 PF07354 Sp38: Zona-pellucida- 27.6 37 0.0008 39.8 2.0 36 801-839 217-261 (271)
33 PRK11132 cysE serine acetyltra 27.6 63 0.0014 38.0 3.9 57 86-149 165-227 (273)
34 KOG4258 Insulin/growth factor 27.5 42 0.0009 44.6 2.7 26 946-971 409-434 (1025)
35 PLN02357 serine acetyltransfer 25.8 84 0.0018 38.4 4.6 20 130-149 293-312 (360)
36 PF12273 RCR: Chitin synthesis 25.0 37 0.00081 35.1 1.4 41 1003-1049 1-41 (130)
37 PF04519 Bactofilin: Polymer-f 24.9 5.7E+02 0.012 25.1 9.4 15 149-163 82-96 (101)
38 COG1045 CysE Serine acetyltran 24.7 81 0.0018 35.6 3.9 57 87-150 92-154 (194)
39 PLN02739 serine acetyltransfer 24.5 79 0.0017 38.6 4.0 20 130-149 272-291 (355)
40 KOG2736 Presenilin [Signal tra 23.6 42 0.00091 41.0 1.6 23 1337-1361 145-167 (406)
41 KOG4180 Predicted kinase [Gene 22.2 1.4E+02 0.0031 36.2 5.4 21 1091-1111 103-123 (395)
42 PLN02694 serine O-acetyltransf 21.7 1.1E+02 0.0023 36.7 4.3 15 132-146 229-243 (294)
43 PRK09527 lacA galactoside O-ac 21.2 2.2E+02 0.0048 32.1 6.5 67 90-161 77-157 (203)
44 PHA02844 putative transmembran 20.7 77 0.0017 30.9 2.4 15 985-999 17-31 (75)
No 1
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=96.13 E-value=0.0054 Score=77.44 Aligned_cols=61 Identities=36% Similarity=0.790 Sum_probs=44.0
Q ss_pred cCCCCCcc----CccceeCCCCccccCCCCCCCCCccCCCCCCCCccceEEeeCCccCCCCCcccccCcccC------Cc
Q 000519 804 KKCPKGLY----GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRM------PK 873 (1448)
Q Consensus 804 k~CP~G~y----G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G~~~~~CpY~C~sdk~~~------p~ 873 (1448)
=-|-+||. +.-|+.||.||||...+ ..+|.+||.+.... .. ..++|. |..++|+. --
T Consensus 261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~-------~e--ga~~C~--C~~gyyRA~~Dp~~mp 327 (996)
T KOG0196|consen 261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS-------SE--GATSCT--CENGYYRADSDPPSMP 327 (996)
T ss_pred eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC-------CC--CCCccc--ccCCcccCCCCCCCCC
Confidence 46899983 66799999999998764 47899999855322 12 236776 88888865 24
Q ss_pred CCch
Q 000519 874 CYTP 877 (1448)
Q Consensus 874 ClTp 877 (1448)
|.+|
T Consensus 328 CT~P 331 (996)
T KOG0196|consen 328 CTRP 331 (996)
T ss_pred CCCC
Confidence 7665
No 2
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=95.99 E-value=0.0043 Score=53.40 Aligned_cols=27 Identities=48% Similarity=1.059 Sum_probs=23.2
Q ss_pred ccceeCCCCccccCCCCCCCCCccCCCCC
Q 000519 813 TFCKECPIGTYKDMEGSDESLCTPCSLEL 841 (1448)
Q Consensus 813 ~fC~eCP~GtYK~~sGs~~~~C~pCp~~~ 841 (1448)
..|++||.||||+..|. ..|.+||.+.
T Consensus 9 ~~C~~Cp~GtYq~~~g~--~~C~~Cp~g~ 35 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQ--TSCTPCPPGS 35 (48)
T ss_pred CccCCCCCCccCCccCC--ccCccCcCCC
Confidence 36999999999999876 4899999864
No 3
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=94.19 E-value=0.13 Score=51.73 Aligned_cols=67 Identities=19% Similarity=0.392 Sum_probs=45.3
Q ss_pred CCCchhhhhhcHHHHHHHHHHHhhhhh--hhh--hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 000519 974 SPPNAIIEIVYEDAFNRFIDEINSVAA--YDW--WEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVK 1040 (1448)
Q Consensus 974 spP~~i~~iVyed~Fn~Fad~IN~laa--y~~--We~~l~~iLsvl~YPlaw~wlq~rRrkK~~rL~efv~ 1040 (1448)
.-|.++..++.+++|++++++||+..+ |.. |.-++-.+|.++..=+...+.....||++++|.+||.
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~ 91 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLE 91 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999873 322 4444555555555222222223345677888999997
No 4
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=90.77 E-value=0.053 Score=48.18 Aligned_cols=36 Identities=33% Similarity=0.773 Sum_probs=20.4
Q ss_pred ccCCCCCcc-----Cc-----cceeCCCCccccCCCCCCCCCccCCCC
Q 000519 803 GKKCPKGLY-----GT-----FCKECPIGTYKDMEGSDESLCTPCSLE 840 (1448)
Q Consensus 803 gk~CP~G~y-----G~-----fC~eCP~GtYK~~sGs~~~~C~pCp~~ 840 (1448)
..+||+|++ |. -|++||.|+|.+.+ +...|.+||.+
T Consensus 6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~--~~~~C~~C~~~ 51 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQT--DSTSCTKCPEG 51 (54)
T ss_dssp S----TTTEEEE--SSS-S--EEEE--TTEEEE----ETTEEEE--TT
T ss_pred CCCCCCCCEECccCCCcceEEEeecCCCCcEECCC--CccccccCCCc
Confidence 478999985 22 49999999999987 44789999975
No 5
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=90.62 E-value=0.39 Score=47.13 Aligned_cols=65 Identities=26% Similarity=0.602 Sum_probs=41.5
Q ss_pred EEccCCCCCcc---------CccceeCCCCccccCCCCCCCCCccCCCCCCCCccceEEeeCC--ccCCCCCcccccCcc
Q 000519 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (1448)
Q Consensus 801 i~gk~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sdk~ 869 (1448)
.-=+.||+|++ ...|++||.|+|...... ...|.+|.. -. .....++.+ ...+.|- |.+++|
T Consensus 12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~-~~~C~~c~~--C~--~g~~~~~~ct~t~dt~C~--C~~G~y 84 (98)
T cd00185 12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNH-LPKCLSCRT--CD--SGLVEKAPCTATRNTVCG--CKPGFY 84 (98)
T ss_pred CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCC-CCcCCcCcc--CC--CCCEEEccCCCCCCCeEe--CCCCCE
Confidence 45688999985 246999999999886542 246777764 22 222333333 2356785 888887
Q ss_pred cCC
Q 000519 870 RMP 872 (1448)
Q Consensus 870 ~~p 872 (1448)
-..
T Consensus 85 ~~~ 87 (98)
T cd00185 85 CLT 87 (98)
T ss_pred ecC
Confidence 543
No 6
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=89.34 E-value=0.33 Score=50.43 Aligned_cols=57 Identities=28% Similarity=0.588 Sum_probs=37.0
Q ss_pred CCCCCcc--Cc-cceeCCCCccccCCCC--CCCCCccCCCCCCCCccceEEeeCCccCCCCCccccc
Q 000519 805 KCPKGLY--GT-FCKECPIGTYKDMEGS--DESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECIS 866 (1448)
Q Consensus 805 ~CP~G~y--G~-fC~eCP~GtYK~~sGs--~~~~C~pCp~~~~p~ra~~iyv~~G~~~~~CpY~C~s 866 (1448)
.|..+-| +. -|.+||+|+|+..-.+ ....|.|||.+++....++. -....|.--|++
T Consensus 31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~-----~~C~~C~~~Cd~ 92 (127)
T PHA02637 31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHL-----PACLSCNGRCDR 92 (127)
T ss_pred CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCC-----CcccccCCccCc
Confidence 6887755 33 4999999999874332 13589999987654444433 125677767765
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=84.73 E-value=0.71 Score=48.07 Aligned_cols=41 Identities=27% Similarity=0.656 Sum_probs=30.8
Q ss_pred CCceEEccCCCCCcc---------CccceeCCCCccccCCCCCCCCCccCC
Q 000519 797 EVGTVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCS 838 (1448)
Q Consensus 797 ~~GTi~gk~CP~G~y---------G~fC~eCP~GtYK~~sGs~~~~C~pCp 838 (1448)
..+.+-=+.||||+| ..-|.+||.|||...... ...|..|.
T Consensus 38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~-~~~C~~C~ 87 (127)
T PHA02637 38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNH-LPACLSCN 87 (127)
T ss_pred cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCC-CCcccccC
Confidence 456667899999985 557999999999875443 24677776
No 8
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=82.87 E-value=1 Score=38.92 Aligned_cols=33 Identities=42% Similarity=0.883 Sum_probs=25.3
Q ss_pred CceEEccCCCCCcc----Cc-cceeCCCCccccCCCCC
Q 000519 798 VGTVTGKKCPKGLY----GT-FCKECPIGTYKDMEGSD 830 (1448)
Q Consensus 798 ~GTi~gk~CP~G~y----G~-fC~eCP~GtYK~~sGs~ 830 (1448)
.+.-.=.+||.|+| |- .|++||.|+|....|+.
T Consensus 6 ~~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~ 43 (48)
T PF07699_consen 6 SGNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGST 43 (48)
T ss_pred CCCCccCCCCCCccCCccCCccCccCcCCCccCCcCCc
Confidence 34445589999987 44 59999999998877764
No 9
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=78.53 E-value=4.7 Score=53.01 Aligned_cols=8 Identities=25% Similarity=0.272 Sum_probs=4.4
Q ss_pred cccccCCC
Q 000519 23 TLSFSSGQ 30 (1448)
Q Consensus 23 ~~~~~~~~ 30 (1448)
-|.|+-.|
T Consensus 963 q~~fpe~~ 970 (1282)
T KOG0921|consen 963 QCSFPEDI 970 (1282)
T ss_pred hccCcccc
Confidence 45555555
No 10
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=68.77 E-value=18 Score=41.26 Aligned_cols=37 Identities=32% Similarity=0.558 Sum_probs=20.0
Q ss_pred cccCCCCCCCCCCCCCCCCccEEEEEEceeeee--ccEEE
Q 000519 220 SYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYL--NGSVT 257 (1448)
Q Consensus 220 ~~GSGGG~~~~~~~~GGaGGG~I~I~A~~~l~l--~G~I~ 257 (1448)
.+|.||-+ +.....|.+||=+|+=....+|.+ +|.|-
T Consensus 114 ~yGRGGnG-s~~~~~g~~GG~~I~N~iG~rLRI~N~GaIA 152 (260)
T PF05268_consen 114 MYGRGGNG-SGSNSAGAAGGHAIQNDIGGRLRINNNGAIA 152 (260)
T ss_pred EEecCCCC-CCCCCCccccceeeecCCcceEEEecCCEEe
Confidence 34444422 334456777777777555555554 45554
No 11
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=60.63 E-value=12 Score=37.75 Aligned_cols=56 Identities=13% Similarity=0.257 Sum_probs=42.4
Q ss_pred ccccCChhHHHHHHHHHhHHhhhh-ccc------------------------cchhhhHHHHHHHHhcCcccccccCeEE
Q 000519 1122 LGQHVPATVWSRLVDGLNAQLRTV-RQG------------------------SIRSALVPVIDWINSHGNPQLEFHGVKI 1176 (1448)
Q Consensus 1122 ~~q~v~~~~w~rfVa~LN~qlr~V-~~~------------------------slr~~l~~vi~~l~~h~n~~l~~~gvrv 1176 (1448)
++..+++++|+++|..+|..++.- ..- .-++.+..+=+||++.|++.+..+|+++
T Consensus 26 L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 566789999999999999998876 221 2223455566799999888999999865
Q ss_pred E
Q 000519 1177 E 1177 (1448)
Q Consensus 1177 ~ 1177 (1448)
-
T Consensus 106 i 106 (118)
T PF10256_consen 106 I 106 (118)
T ss_pred E
Confidence 3
No 12
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=59.49 E-value=5.9 Score=39.53 Aligned_cols=24 Identities=29% Similarity=0.717 Sum_probs=17.9
Q ss_pred ccceeCCCCccccCCCCCCCCCccCCC
Q 000519 813 TFCKECPIGTYKDMEGSDESLCTPCSL 839 (1448)
Q Consensus 813 ~fC~eCP~GtYK~~sGs~~~~C~pCp~ 839 (1448)
..|.+|..|+|++..+ ..|.+|+.
T Consensus 4 ~~Ct~C~~g~~~~~~~---~~C~~C~~ 27 (96)
T PTZ00382 4 AVCTSCDSDKKPNKDG---SGCVLCSV 27 (96)
T ss_pred cccCcCCCCCccCCCC---CcCCcCCC
Confidence 4688999999887543 46888885
No 13
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=57.37 E-value=12 Score=38.87 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=33.7
Q ss_pred ccCChhHHHHHHHHHhHHhhhhcccc-----------------------------chhhhHHHHHHHHhcCccccccc
Q 000519 1124 QHVPATVWSRLVDGLNAQLRTVRQGS-----------------------------IRSALVPVIDWINSHGNPQLEFH 1172 (1448)
Q Consensus 1124 q~v~~~~w~rfVa~LN~qlr~V~~~s-----------------------------lr~~l~~vi~~l~~h~n~~l~~~ 1172 (1448)
-.|..+.|.||+.+|+.-.++-...+ ..+.--+|-+.|++||+.+|+.-
T Consensus 45 ~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~~WN~~FF~PR 122 (123)
T PF15496_consen 45 HDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTIDQWNEGFFRPR 122 (123)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHHHHHHHhccCC
Confidence 35999999999999999844433222 22223356678888888888754
No 14
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=56.76 E-value=15 Score=38.24 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=49.1
Q ss_pred hhhhhcHHHHHHHHHHHhhhhhhhhhhhhhhhhhh--------hhccchhHHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 000519 979 IIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILT--------VLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLR 1049 (1448)
Q Consensus 979 i~~iVyed~Fn~Fad~IN~laay~~We~~l~~iLs--------vl~YPlaw~wlq~rRrkK~~rL~efv~seyd~~c~r 1049 (1448)
...=|.++++.+|.++++.-++.+.+|.++-...- +..|=.++.....+++||-.++.++|. ..|+.||+
T Consensus 43 ~~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~-~WN~~FF~ 120 (123)
T PF15496_consen 43 ASHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTID-QWNEGFFR 120 (123)
T ss_pred hhcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHH-HHHHHhcc
Confidence 44457889999999999999888877754332211 334445565666777777778899886 67777665
No 15
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=55.77 E-value=11 Score=37.15 Aligned_cols=38 Identities=34% Similarity=0.941 Sum_probs=26.5
Q ss_pred CCCCcc----CccceeCCCCccccCCCC--CCCCCccCCCCCCC
Q 000519 806 CPKGLY----GTFCKECPIGTYKDMEGS--DESLCTPCSLELLP 843 (1448)
Q Consensus 806 CP~G~y----G~fC~eCP~GtYK~~sGs--~~~~C~pCp~~~~p 843 (1448)
|+++.| +.-|..||+|+|-..... ....|.+||.+++.
T Consensus 1 c~~~~y~~~~~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys 44 (98)
T cd00185 1 CREGEYYYTGGLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYT 44 (98)
T ss_pred CCCcceEcCCCCCCCCCCCCccCCCcCCCCCCCeecCCCCCCcc
Confidence 455543 445999999999876532 23689999987653
No 16
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.64 E-value=34 Score=36.35 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=54.7
Q ss_pred CCCCchhhhhhcHHHHHHHHHHHhhhhhh-------hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhh---
Q 000519 973 YSPPNAIIEIVYEDAFNRFIDEINSVAAY-------DWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSE--- 1042 (1448)
Q Consensus 973 ~spP~~i~~iVyed~Fn~Fad~IN~laay-------~~We~~l~~iLsvl~YPlaw~wlq~rRrkK~~rL~efv~se--- 1042 (1448)
...|..+++.|..+.|+.=+..+|++.|= .-+|+. +=++.+|-.|.--.. -=+||+++|+||+.++
T Consensus 45 ~~~pa~le~~i~R~vfE~Ti~rlN~~yAeAE~~~~qty~Egc---lgC~TaY~iy~ctet-hYek~L~klskfl~~qNe~ 120 (154)
T KOG4069|consen 45 AEYPARLEEKIPRDVFENTIVRLNRIYAEAEAITPQTYFEGC---LGCFTAYAIYACTET-HYEKKLDKLSKFLNRQNEE 120 (154)
T ss_pred ecCcHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCcchHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhh
Confidence 35789999999999999999999998643 236666 345666655543332 2457899999999853
Q ss_pred -cCcc--cccccchhhc
Q 000519 1043 -YDHS--CLRSCRSRAL 1056 (1448)
Q Consensus 1043 -yd~~--c~rs~rsral 1056 (1448)
|.|- -+|++-.|.|
T Consensus 121 IY~~~Gl~l~dP~eRGL 137 (154)
T KOG4069|consen 121 IYHHVGLHLRDPMERGL 137 (154)
T ss_pred hccccceeecCchhhce
Confidence 6664 3455555543
No 17
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=53.57 E-value=7.9 Score=33.47 Aligned_cols=19 Identities=32% Similarity=0.821 Sum_probs=17.9
Q ss_pred CCCCccCccceeCCCCccc
Q 000519 806 CPKGLYGTFCKECPIGTYK 824 (1448)
Q Consensus 806 CP~G~yG~fC~eCP~GtYK 824 (1448)
|++++.|..|++|+.|+|-
T Consensus 22 C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 22 CKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CCCCCCCCCCCcCCCCcCC
Confidence 9999999999999999996
No 18
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=53.49 E-value=7.8 Score=33.87 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=22.1
Q ss_pred CCceEEccCCCCCccCccceeCCCCccccC
Q 000519 797 EVGTVTGKKCPKGLYGTFCKECPIGTYKDM 826 (1448)
Q Consensus 797 ~~GTi~gk~CP~G~yG~fC~eCP~GtYK~~ 826 (1448)
.+|.- .|++++.|..|++|+.|+|...
T Consensus 17 ~~G~C---~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 17 GTGQC---ECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCCEE---eCCCcCCCCCCCCCCCCCccCC
Confidence 45554 3999999999999999999654
No 19
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=53.15 E-value=13 Score=52.50 Aligned_cols=43 Identities=33% Similarity=0.690 Sum_probs=36.1
Q ss_pred CceEEccCCCCCccCccceeCCCCccccCCCCC--CCCCccCCCC
Q 000519 798 VGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSD--ESLCTPCSLE 840 (1448)
Q Consensus 798 ~GTi~gk~CP~G~yG~fC~eCP~GtYK~~sGs~--~~~C~pCp~~ 840 (1448)
.-++.-|.||+||.|..|++|.-|+|=+..+-+ ...|++|+-+
T Consensus 794 ~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~ 838 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCN 838 (1705)
T ss_pred ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceec
Confidence 667778999999999999999999998876543 3589999974
No 20
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=52.56 E-value=33 Score=45.78 Aligned_cols=7 Identities=29% Similarity=0.482 Sum_probs=2.8
Q ss_pred EeeeEec
Q 000519 151 AANLTMD 157 (1448)
Q Consensus 151 A~ni~i~ 157 (1448)
|+.+.+.
T Consensus 1141 Aa~inLm 1147 (1282)
T KOG0921|consen 1141 AADINLM 1147 (1282)
T ss_pred cccccce
Confidence 3444433
No 21
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.92 E-value=18 Score=43.43 Aligned_cols=65 Identities=34% Similarity=0.725 Sum_probs=41.8
Q ss_pred cceeCCCCccccCCCCCCCCCccCCCCCC--CCccceEEee-CC--c-cCCCCCcccccCcccC-----CcCCchHHHHH
Q 000519 814 FCKECPIGTYKDMEGSDESLCTPCSLELL--PRRANFIYVR-GG--V-SQPFCPYECISEKYRM-----PKCYTPLEELM 882 (1448)
Q Consensus 814 fC~eCP~GtYK~~sGs~~~~C~pCp~~~~--p~ra~~iyv~-~G--~-~~~~CpY~C~sdk~~~-----p~ClTple~li 882 (1448)
-|+|||-||.... +.--|..|.+++. |++..-++-. .| . ....|- .|-+++|+. ..|-|...|.-
T Consensus 51 tceecpegtlssp---dqtgclncnngtchcpsqstlifrdasgnlltndafcg-ncasgfyrndngyctkcetscsemn 126 (747)
T KOG4611|consen 51 TCEECPEGTLSSP---DQTGCLNCNNGTCHCPSQSTLIFRDASGNLLTNDAFCG-NCASGFYRNDNGYCTKCETSCSEMN 126 (747)
T ss_pred ccccCCCcccCCC---ccCCceecCCCccCCCCcceEEEEcCCCCeeccccccc-cccccceECCCcccccccccHhhhc
Confidence 4999999997654 4567999988764 4444444433 22 1 235664 688888865 56777766653
No 22
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=49.83 E-value=12 Score=51.32 Aligned_cols=85 Identities=21% Similarity=0.180 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHhhhcccccCCCccccccccccCcccc--chhhhhhhhhhhhhh
Q 000519 1288 DTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRS--SLTRIYALWNATSLS 1365 (1448)
Q Consensus 1288 ~~~~l~i~~~ll~d~~~~ll~llq~y~~~~~~~~~~l~~lp~~~~~p~~ag~nalfs~~~~r~--~~~r~~~lwn~~s~~ 1365 (1448)
..|++-...+||+=+.+++|-.|---+.++..-|++-|-| .+-+|-||--++ --+=+-+|--.+++.
T Consensus 2171 a~~gvslaal~lt~~llls~RsLksn~~~I~~~l~~Al~l-----------~~L~Fv~gi~~nq~~CtvvailLhf~~~s 2239 (2531)
T KOG4289|consen 2171 AAVGVSLAALLLTFLLLLSLRSLKSNSHGIHFNLAAALGL-----------AQLVFVLGINQNQFYCTVVAILLHFTYLS 2239 (2531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhH-----------HHHHhhhhcccCchhhHHHHHHHHHHHhh
Confidence 5677777777777777777777776666766555443322 122455555455 234455677777777
Q ss_pred HHHHHhhhheeeeccccc
Q 000519 1366 NIVVAFISGICHYGFWFA 1383 (1448)
Q Consensus 1366 n~~~a~~~g~~~~~~~~~ 1383 (1448)
-..-+|+.|+--|-|-..
T Consensus 2240 tFaWlfl~gLhlYRml~e 2257 (2531)
T KOG4289|consen 2240 TFAWLFLEGLHLYRMLTE 2257 (2531)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 777888888766665543
No 23
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=40.65 E-value=92 Score=37.83 Aligned_cols=8 Identities=75% Similarity=1.448 Sum_probs=4.0
Q ss_pred CCCCCeee
Q 000519 298 GGGGGRVS 305 (1448)
Q Consensus 298 GGGGGRIa 305 (1448)
||||||-.
T Consensus 452 gggggrg~ 459 (465)
T KOG3973|consen 452 GGGGGRGG 459 (465)
T ss_pred CCCCCCcc
Confidence 34466644
No 24
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.49 E-value=26 Score=36.30 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=9.7
Q ss_pred c-chhHHHHHHHHHHHHHHHHh
Q 000519 889 W-PFVLLLSCILVLLALLLSTL 909 (1448)
Q Consensus 889 ~-~F~LlL~~llvLLalv~s~~ 909 (1448)
| +|+||+++++|+|+++....
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 6 44444444444444444433
No 25
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=35.79 E-value=15 Score=31.68 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.6
Q ss_pred CCCCccCccceeCCCCccccC
Q 000519 806 CPKGLYGTFCKECPIGTYKDM 826 (1448)
Q Consensus 806 CP~G~yG~fC~eCP~GtYK~~ 826 (1448)
|++++.|.+|++|..|||...
T Consensus 22 C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 22 CKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp BSTTEESTTS-EE-TTEECST
T ss_pred ccccccCCcCcCCCCcccccc
Confidence 999999999999999999764
No 26
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=32.49 E-value=35 Score=29.38 Aligned_cols=22 Identities=50% Similarity=1.082 Sum_probs=11.0
Q ss_pred cCCCCCc--cCccce-eCCCCcccc
Q 000519 804 KKCPKGL--YGTFCK-ECPIGTYKD 825 (1448)
Q Consensus 804 k~CP~G~--yG~fC~-eCP~GtYK~ 825 (1448)
..|++|+ .+..|+ +||.++|.+
T Consensus 18 ~~C~~~~~~~~~~Cv~~C~~~~~~~ 42 (49)
T cd00064 18 TSCRHGFYLDGGTCVSECPEGTYAD 42 (49)
T ss_pred ccCcCccCCCCCcccccCCCCceec
Confidence 3455555 244455 555555544
No 27
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=32.36 E-value=1.3e+02 Score=32.18 Aligned_cols=68 Identities=22% Similarity=0.349 Sum_probs=39.7
Q ss_pred EEcceeEeccceEEeeccceEEcCCcEEEeccCCceEE--------------EEEeeeEEEccCcEEEeeeEEEEEeeeE
Q 000519 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKIT--------------FNMSGNINMGQYAAIVAGSVVVSAANLT 155 (1448)
Q Consensus 90 ~l~~~~~l~~d~~i~g~g~l~i~~gv~l~c~~~Gc~i~--------------v~~sG~itl~~~s~ivagsv~l~A~ni~ 155 (1448)
.|-.++.|+.+.+|...++++|-+++.+ .++|.|. ....+.++|++++.|-++.+.+ .+++
T Consensus 64 ~IG~~v~I~~~~~i~~~~~i~IG~~v~I---g~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~--~gv~ 138 (169)
T cd03357 64 HIGDNFYANFNCTILDVAPVTIGDNVLI---GPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIIL--PGVT 138 (169)
T ss_pred EECCCceEcCCEEEeccCcEEECCCCEE---CCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEe--CCCE
Confidence 4556666666665655566666666555 3333332 1245678888888877776554 3455
Q ss_pred ecCCCeE
Q 000519 156 MDLNSSI 162 (1448)
Q Consensus 156 i~~~s~I 162 (1448)
|.++..|
T Consensus 139 Ig~~~~V 145 (169)
T cd03357 139 IGDNSVI 145 (169)
T ss_pred ECCCCEE
Confidence 5555554
No 28
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.29 E-value=36 Score=37.88 Aligned_cols=53 Identities=28% Similarity=0.354 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhcCCCCCcccccccccccccCccc---hhhhhhccc
Q 000519 890 PFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYL---LSLSEVRGT 945 (1448)
Q Consensus 890 ~F~LlL~~llvLLalv~s~~R~K~~g~d~l~~~~~~~~~~~~sfp~L---~Sl~Ev~~~ 945 (1448)
+|+++| .+.++++ ++.++|.--.+.++.+...+.+ .++.+|... ++|||..+.
T Consensus 14 ~f~iLL-Aln~l~~-~~i~~~vlsp~ee~t~~~~a~~-~~~~~fqitttr~~LN~li~s 69 (197)
T COG4698 14 LFFILL-ALNTLLA-VLIALFVLSPREEPTHLEDASE-KSEKSFQITTTRSQLNELINS 69 (197)
T ss_pred HHHHHH-HHHHHHH-HHhheeeccCCCCCchhhccCc-ccceeEEEEccHHHHHHHHHH
Confidence 554444 5555555 4445554333433555444443 356666544 568887776
No 29
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=30.52 E-value=1.2e+02 Score=33.45 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=21.3
Q ss_pred HhCCCc-chhHHHHHHHHHHHHHHHHhhhh
Q 000519 884 TFGGPW-PFVLLLSCILVLLALLLSTLRIK 912 (1448)
Q Consensus 884 tfGGp~-~F~LlL~~llvLLalv~s~~R~K 912 (1448)
.+|||. ...|||=.|+|-++|+++++-.-
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FF 112 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFF 112 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 578999 45555557888889999887643
No 30
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=29.04 E-value=1.1e+02 Score=35.34 Aligned_cols=41 Identities=29% Similarity=0.663 Sum_probs=22.1
Q ss_pred EEEEecCCC-CCCCcccCCccEEEEE----EEeecceEEEeecCCC
Q 000519 255 SVTAEGGDG-GLKGGGGSGGSIYVLA----VKLKGYGFISAAGGRG 295 (1448)
Q Consensus 255 ~I~AnGg~g-~~~GGGGSGGSI~L~a----~~l~g~G~isA~GG~G 295 (1448)
.+.--|+++ ....-|.+||...=.. .+|..+|.|..-||.|
T Consensus 113 t~yGRGGnGs~~~~~g~~GG~~I~N~iG~rLRI~N~GaIAgGGGGG 158 (260)
T PF05268_consen 113 TMYGRGGNGSGSNSAGAAGGHAIQNDIGGRLRINNNGAIAGGGGGG 158 (260)
T ss_pred EEEecCCCCCCCCCCccccceeeecCCcceEEEecCCEEecCCCCc
Confidence 334445666 3456667777743222 3566667775444443
No 31
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=28.46 E-value=1.3e+02 Score=32.92 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=43.7
Q ss_pred EeccceEEeeccceEEcCCcEEEeccCCceEEEEEeeeEEEccCcEEEeeeEEEEEeeeEecCCCeEE
Q 000519 96 YLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSIN 163 (1448)
Q Consensus 96 ~l~~d~~i~g~g~l~i~~gv~l~c~~~Gc~i~v~~sG~itl~~~s~ivagsv~l~A~ni~i~~~s~In 163 (1448)
.|....++.+.+++++-+++.+ ..+|.+.+...+.+++++++.|-.+.......+++|.++..|.
T Consensus 31 ~i~~pf~~~~~~~I~iG~~v~i---~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig 95 (192)
T PRK09677 31 IIRFPFYIRNDGSINFGEGFTS---GVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIA 95 (192)
T ss_pred EEcCCEEEcCCCeEEECCceEE---CCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEEC
Confidence 3444567777778888888766 6777777667788888888777555443334566666666554
No 32
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=27.61 E-value=37 Score=39.77 Aligned_cols=36 Identities=28% Similarity=0.607 Sum_probs=27.8
Q ss_pred EEccCCCCCccC---------ccceeCCCCccccCCCCCCCCCccCCC
Q 000519 801 VTGKKCPKGLYG---------TFCKECPIGTYKDMEGSDESLCTPCSL 839 (1448)
Q Consensus 801 i~gk~CP~G~yG---------~fC~eCP~GtYK~~sGs~~~~C~pCp~ 839 (1448)
++=..|+|||.. .=|+-|++|||.-..+ ..|..|..
T Consensus 217 v~idsC~PGfG~N~~~h~~C~~CCVvCsPgTysp~~~---~~C~~C~~ 261 (271)
T PF07354_consen 217 VRIDSCRPGFGKNDILHSDCPSCCVVCSPGTYSPDDD---VHCQQCNS 261 (271)
T ss_pred EEeeccCCCCCcCcccCCCCCCeeEECCCcccCCCCC---ceEEecCc
Confidence 455789999862 2499999999987644 58999995
No 33
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=27.60 E-value=63 Score=37.97 Aligned_cols=57 Identities=33% Similarity=0.476 Sum_probs=28.6
Q ss_pred cceEEEcceeEeccceEEeeccc------eEEcCCcEEEeccCCceEEEEEeeeEEEccCcEEEeeeEEE
Q 000519 86 NTTCLLNSNLYLNYDLYIYGTGN------LEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVV 149 (1448)
Q Consensus 86 dt~C~l~~~~~l~~d~~i~g~g~------l~i~~gv~l~c~~~Gc~i~v~~sG~itl~~~s~ivagsv~l 149 (1448)
+..|+|-+.++|..+++|-|++. -+|-++|.+ .+||. +.|+++|++++.|-+++++.
T Consensus 165 G~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~I---Gaga~----Ilggv~IG~~a~IGAgSvV~ 227 (273)
T PRK11132 165 GETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMI---GAGAK----ILGNIEVGRGAKIGAGSVVL 227 (273)
T ss_pred CCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEE---cCCCE----EcCCCEECCCCEECCCCEEC
Confidence 34455555555555555554321 233334433 34422 34666666666666666555
No 34
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=27.53 E-value=42 Score=44.57 Aligned_cols=26 Identities=12% Similarity=0.405 Sum_probs=15.7
Q ss_pred cccccccceEEEEEecCCCCCCCccc
Q 000519 946 RAEETQSHVHRMYFMGPNTFREPWHL 971 (1448)
Q Consensus 946 ~~eDL~~Hv~RmYf~G~NT~~~PW~L 971 (1448)
+-+.|-.--+-+|+.=|-..++=|--
T Consensus 409 rGd~l~~~~Ys~yv~dN~nL~qLwd~ 434 (1025)
T KOG4258|consen 409 RGDPLEEGNYSFYVLDNQNLQQLWDW 434 (1025)
T ss_pred ccchhhcCceEEEEecCcCHHhcCCc
Confidence 44555556667777766666555543
No 35
>PLN02357 serine acetyltransferase
Probab=25.85 E-value=84 Score=38.41 Aligned_cols=20 Identities=55% Similarity=0.743 Sum_probs=11.6
Q ss_pred EeeeEEEccCcEEEeeeEEE
Q 000519 130 MSGNINMGQYAAIVAGSVVV 149 (1448)
Q Consensus 130 ~sG~itl~~~s~ivagsv~l 149 (1448)
+.|+++|++++.|-+++++.
T Consensus 293 IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 293 ILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred EECCeEECCCCEECCCCEEC
Confidence 44566666666666665544
No 36
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.04 E-value=37 Score=35.12 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHhhcCccccc
Q 000519 1003 WWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLR 1049 (1448)
Q Consensus 1003 ~We~~l~~iLsvl~YPlaw~wlq~rRrkK~~rL~efv~seyd~~c~r 1049 (1448)
+|-.++.+|+.++.+-+...+..+||||| .+ +-.|.++|+-
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~--G~----~P~~gt~w~~ 41 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR--GL----QPIYGTRWMA 41 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc--CC----CCcCCceecC
Confidence 46666666666666666666666666665 11 2345666665
No 37
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=24.86 E-value=5.7e+02 Score=25.10 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=9.1
Q ss_pred EEEeeeEecCCCeEE
Q 000519 149 VSAANLTMDLNSSIN 163 (1448)
Q Consensus 149 l~A~ni~i~~~s~In 163 (1448)
+.+..+.|..+..|+
T Consensus 82 i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 82 ITAGKLEVEGGASIN 96 (101)
T ss_pred EEECEEEEeCCCEEE
Confidence 345556777666665
No 38
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=24.67 E-value=81 Score=35.59 Aligned_cols=57 Identities=32% Similarity=0.434 Sum_probs=34.5
Q ss_pred ceEEEcceeEeccceEEeeccc------eEEcCCcEEEeccCCceEEEEEeeeEEEccCcEEEeeeEEEE
Q 000519 87 TTCLLNSNLYLNYDLYIYGTGN------LEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVS 150 (1448)
Q Consensus 87 t~C~l~~~~~l~~d~~i~g~g~------l~i~~gv~l~c~~~Gc~i~v~~sG~itl~~~s~ivagsv~l~ 150 (1448)
.||++-++++|-..+++=|+|. =+|-++|.+ .+| ..+-|+|+|++|++|=|++|++.
T Consensus 92 eta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~I---Gag----AkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 92 ETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYI---GAG----AKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred ceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEE---CCC----CEEEcceEECCCCEECCCceEcc
Confidence 3444444444444444444432 123344444 566 34679999999999999999886
No 39
>PLN02739 serine acetyltransferase
Probab=24.47 E-value=79 Score=38.56 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=12.9
Q ss_pred EeeeEEEccCcEEEeeeEEE
Q 000519 130 MSGNINMGQYAAIVAGSVVV 149 (1448)
Q Consensus 130 ~sG~itl~~~s~ivagsv~l 149 (1448)
+.|+++|++++.|-+|+++.
T Consensus 272 IlG~V~IGd~aiIGAGSVV~ 291 (355)
T PLN02739 272 ILGNISIGAGAMVAAGSLVL 291 (355)
T ss_pred EeCCeEECCCCEECCCCEEC
Confidence 34667777777766666654
No 40
>KOG2736 consensus Presenilin [Signal transduction mechanisms]
Probab=23.61 E-value=42 Score=40.96 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.1
Q ss_pred cccccccccCccccchhhhhhhhhh
Q 000519 1337 AGLNALFSKEPRRSSLTRIYALWNA 1361 (1448)
Q Consensus 1337 ag~nalfs~~~~r~~~~r~~~lwn~ 1361 (1448)
-|+-++|.+||+| |...|-.|+.
T Consensus 145 vGm~~ihwkgpl~--L~Q~YlI~~~ 167 (406)
T KOG2736|consen 145 VGMYSIHWKGPLR--LQQAYLIMIS 167 (406)
T ss_pred ceEEEEEeCCcee--ehhHHHHHHH
Confidence 4899999999999 8888988874
No 41
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=22.21 E-value=1.4e+02 Score=36.24 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=16.8
Q ss_pred cccCcEEEEeecccccccccc
Q 000519 1091 QKRFPMCIIFGGNGSYMSPYN 1111 (1448)
Q Consensus 1091 ~~~~Pm~Ilf~GdGSym~Pf~ 1111 (1448)
..--.|+|-.||||+|+--=+
T Consensus 103 i~waD~VisvGGDGTfL~Aas 123 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAAS 123 (395)
T ss_pred CchhhEEEEecCccceeehhh
Confidence 344579999999999987666
No 42
>PLN02694 serine O-acetyltransferase
Probab=21.69 E-value=1.1e+02 Score=36.67 Aligned_cols=15 Identities=53% Similarity=0.778 Sum_probs=5.9
Q ss_pred eeEEEccCcEEEeee
Q 000519 132 GNINMGQYAAIVAGS 146 (1448)
Q Consensus 132 G~itl~~~s~ivags 146 (1448)
|+++|+++++|-+++
T Consensus 229 ggi~IGd~a~IGAgS 243 (294)
T PLN02694 229 GNVKIGEGAKIGAGS 243 (294)
T ss_pred CCCEECCCCEECCCC
Confidence 333444444333333
No 43
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=21.19 E-value=2.2e+02 Score=32.08 Aligned_cols=67 Identities=22% Similarity=0.263 Sum_probs=34.4
Q ss_pred EEcceeEeccceEEeeccceEEcCCcEEEeccCCceEEE--------------EEeeeEEEccCcEEEeeeEEEEEeeeE
Q 000519 90 LLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITF--------------NMSGNINMGQYAAIVAGSVVVSAANLT 155 (1448)
Q Consensus 90 ~l~~~~~l~~d~~i~g~g~l~i~~gv~l~c~~~Gc~i~v--------------~~sG~itl~~~s~ivagsv~l~A~ni~ 155 (1448)
.|-+.+.|+.+..|...++++|-+++.+ .++|.|.. .....++|++++.|-++.+.. .+++
T Consensus 77 ~IG~~v~In~~~~I~d~~~I~IGd~v~I---g~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~--~gv~ 151 (203)
T PRK09527 77 HIGRNFYANFNLTIVDDYTVTIGDNVLI---APNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVIN--PGVT 151 (203)
T ss_pred EEcCCcEECCCcEEecCCCEEECCCCEE---CCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEc--CCCE
Confidence 4445555555555555555666655555 34444331 123447788777776665443 2344
Q ss_pred ecCCCe
Q 000519 156 MDLNSS 161 (1448)
Q Consensus 156 i~~~s~ 161 (1448)
|.++..
T Consensus 152 IG~~~v 157 (203)
T PRK09527 152 IGDNSV 157 (203)
T ss_pred ECCCCE
Confidence 444444
No 44
>PHA02844 putative transmembrane protein; Provisional
Probab=20.69 E-value=77 Score=30.91 Aligned_cols=15 Identities=47% Similarity=0.811 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhh
Q 000519 985 EDAFNRFIDEINSVA 999 (1448)
Q Consensus 985 ed~Fn~Fad~IN~la 999 (1448)
+|.||+|+|-+-.++
T Consensus 17 DdDFnnFI~vVksVL 31 (75)
T PHA02844 17 NEDFNNFIDVVKSVL 31 (75)
T ss_pred hHHHHHHHHHHHHHH
Confidence 688999999987776
Done!