Query 000519
Match_columns 1448
No_of_seqs 203 out of 205
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 17:41:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000519.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_291-294//hhsearch_pdb/000519hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 43.6 3.4 37 804-842 265-303 (536)
2 1jma_B Herpesvirus entry media 1.0 1 1 35.9 4.1 66 801-871 14-90 (167)
3 3u3p_A Tumor necrosis factor r 1.0 1 1 35.7 3.4 63 801-869 24-97 (313)
4 3tje_F Tumor necrosis factor r 1.0 1 1 34.9 4.1 64 803-871 44-120 (156)
5 4fhq_A Tumor necrosis factor r 1.0 1 1 34.5 3.6 63 803-870 18-91 (134)
6 2e4u_A Metabotropic glutamate 1.0 1 1 34.2 1.0 40 801-844 484-532 (555)
7 3me4_A Tumor necrosis factor r 1.0 1 1 34.2 4.1 68 798-870 41-119 (216)
8 2uwi_A CRME protein; receptor, 1.0 1 1 34.2 3.5 64 801-870 15-89 (142)
9 2hey_R Tumor necrosis factor r 1.0 1 1 33.9 2.9 62 803-870 19-91 (146)
10 1ext_A Tumor necrosis factor r 1.0 1 1 33.3 3.7 64 802-870 19-94 (162)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=43.63 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=29.8
Q ss_pred CCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999866--8543018999423677999987734899887
Q 000519 804 KKCPKGLY--GTFCKECPIGTYKDMEGSDESLCTPCSLELL 842 (1448)
Q Consensus 804 k~CP~Gly--G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~ 842 (1448)
=.|.+||. +..|+.||.|+||...+. ..|.+||.+..
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~~--~~C~~CP~~S~ 303 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEASE--SPCLECPEHTL 303 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCCS--SCCEECCSSEE
T ss_pred EECCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCCCCCCC
T ss_conf 7666764469965542589987666789--85006888777
No 2
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=35.85 Aligned_cols=66 Identities=24% Similarity=0.496 Sum_probs=39.7
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEE-CCCCCCCCCCCCCCCCC
Q ss_conf 98568999866---------8543018999423677999987734899887875-3148863-78458888842126865
Q 000519 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRR-ANFIYVR-GGVSQPFCPYECISEKY 869 (1448)
Q Consensus 801 i~gk~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~r-a~~iyv~-~G~~~~~CpY~C~sdk~ 869 (1448)
..=+.||+|+| ...|++||.|+|...... ...|.+|+. -+.. ..++-.. .....+.| .|.+++|
T Consensus 14 ~~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y 88 (167)
T 1jma_B 14 ECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHF 88 (167)
T ss_dssp BCCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCE
T ss_conf 28888899987656789999985772989951366676-763648744--566788688556788888700--3899965
Q ss_pred CC
Q ss_conf 69
Q 000519 870 RM 871 (1448)
Q Consensus 870 ~~ 871 (1448)
..
T Consensus 89 ~~ 90 (167)
T 1jma_B 89 CI 90 (167)
T ss_dssp EE
T ss_pred EC
T ss_conf 26
No 3
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=35.68 Aligned_cols=63 Identities=30% Similarity=0.645 Sum_probs=32.3
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCCC
Q ss_conf 98568999866---------8543018999423677999987734899887875314886378--458888842126865
Q 000519 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (1448)
Q Consensus 801 i~gk~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sdk~ 869 (1448)
+-=+.||+|+| ...|++||.|+|+..... ...|.+|... .. .....++.. ...+.| .|.+++|
T Consensus 24 ~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N~-~~~C~~C~~~-C~--~g~~~~~~CT~TsDtvC--~C~~G~y 97 (313)
T 3u3p_A 24 LTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENG-IEKCHDCSQP-CP--WPMIEKLPCAALTDREC--TCPPGMF 97 (313)
T ss_dssp EEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCBC-CSSCEECCCC-CC--TTCEEEECSBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCC-CC--CCCEEECCCCCCCCCCC--CCCCCCE
T ss_conf 88889799932667678999974316999856026887-8808144660-47--88778357868888201--4788703
No 4
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=1.00 E-value=1 Score=34.94 Aligned_cols=64 Identities=23% Similarity=0.412 Sum_probs=34.9
Q ss_pred CCCCCCCCC----------CCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCCC
Q ss_conf 568999866----------8543018999-423677999987734899887875314886378--458888842126865
Q 000519 803 GKKCPKGLY----------GTFCKECPIG-TYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (1448)
Q Consensus 803 gk~CP~Gly----------G~fC~eCP~G-tYKn~sGs~~~lC~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sdk~ 869 (1448)
=+.||||+| ...|++||.| +|..... ....|.+|.. -........++.. ...+.| .|.+++|
T Consensus 44 C~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~f 118 (156)
T 3tje_F 44 HKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAH-FSSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNFF 118 (156)
T ss_dssp SSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCB-SCSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCEECCCCCEEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCEE--ECCCCCE
T ss_conf 8889989717776889998976503989870403689-8772757887--788844478646647789711--2899987
Q ss_pred CC
Q ss_conf 69
Q 000519 870 RM 871 (1448)
Q Consensus 870 ~~ 871 (1448)
-.
T Consensus 119 c~ 120 (156)
T 3tje_F 119 CN 120 (156)
T ss_dssp CC
T ss_pred EC
T ss_conf 68
No 5
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=34.52 Aligned_cols=63 Identities=27% Similarity=0.566 Sum_probs=39.9
Q ss_pred CCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCCCC
Q ss_conf 568999866---------8543018999423677999987734899887875314886378--4588888421268656
Q 000519 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKYR 870 (1448)
Q Consensus 803 gk~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sdk~~ 870 (1448)
=+.||+|+| ...|++||.|+|..... ....|.+|.. -......+.++.. ...+.|. |.+++|-
T Consensus 18 C~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n-~~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC~--C~~G~~c 91 (134)
T 4fhq_A 18 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLN-GLSKCLQCQM--CDPAMGLRASRNCSRTENAVCG--CSPGHFC 91 (134)
T ss_dssp EECBCTTEEEEECCC--CCCEEEECCTTEECCSCB-CCSSCEECCC--CCGGGTEEEEECCCSSSCCEEE--ECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCC-CCCCCCCCCC--CCCCCCEEEECCCCCCCCCCCC--CCCCCEE
T ss_conf 87999797754237999998133899987744788-8883867798--8856796786057787895636--9999886
No 6
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=34.23 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=29.0
Q ss_pred EECCCCCCCCCC---------CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 985689998668---------54301899942367799998773489988787
Q 000519 801 VTGKKCPKGLYG---------TFCKECPIGTYKDMEGSDESLCTPCSLELLPR 844 (1448)
Q Consensus 801 i~gk~CP~GlyG---------~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ 844 (1448)
+-...||||+.. +-|.+||-|.+. + |...|.+||.+.-|+
T Consensus 484 ~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 484 QCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred EECCCCCCCEEEEECCCCEEEEECCCCCCCEEC--C--CCCCCEECCCCCCCC
T ss_conf 317977998055405897368978657775003--7--786644688323769
No 7
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=34.22 Aligned_cols=68 Identities=19% Similarity=0.337 Sum_probs=41.0
Q ss_pred CCEEECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCC
Q ss_conf 95498568999866---------8543018999423677999987734899887875314886378--458888842126
Q 000519 798 VGTVTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECIS 866 (1448)
Q Consensus 798 ~GTi~gk~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~s 866 (1448)
.+..-=+.||+|+| ...|++||.|+|...... ...|.+|+. -.....+..++.. ...+.|. |.+
T Consensus 41 ~~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC~--C~~ 115 (216)
T 3me4_A 41 HLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRCA--CTA 115 (216)
T ss_dssp ETTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEEE--ECT
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCC--CCCCCCEEEEECCCCCCCCCCC--CCC
T ss_conf 67888689998955635689999982032899976257898-876978888--7887576887247788885025--879
Q ss_pred CCCC
Q ss_conf 8656
Q 000519 867 EKYR 870 (1448)
Q Consensus 867 dk~~ 870 (1448)
++|.
T Consensus 116 G~y~ 119 (216)
T 3me4_A 116 GYHW 119 (216)
T ss_dssp TEEE
T ss_pred CEEC
T ss_conf 9470
No 8
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=34.15 Aligned_cols=64 Identities=27% Similarity=0.561 Sum_probs=41.3
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCCC
Q ss_conf 98568999866---------8543018999423677999987734899887875314886378--458888842126865
Q 000519 801 VTGKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (1448)
Q Consensus 801 i~gk~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sdk~ 869 (1448)
.-=+.||||+| ...|++||.|+|...... ...|.+|..-. ....+-++.. ...+.| .|.+++|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~---~~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC---GTNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC---CTTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC---CCCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 88878988974676688998975675899977456898-98467876705---688567615989879981--1899968
Q ss_pred C
Q ss_conf 6
Q 000519 870 R 870 (1448)
Q Consensus 870 ~ 870 (1448)
.
T Consensus 89 c 89 (142)
T 2uwi_A 89 C 89 (142)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 9
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=33.93 Aligned_cols=62 Identities=24% Similarity=0.487 Sum_probs=38.7
Q ss_pred CCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCCCC
Q ss_conf 568999866---------8543018999423677999987734899887875314886378--4588888421268656
Q 000519 803 GKKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKYR 870 (1448)
Q Consensus 803 gk~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sdk~~ 870 (1448)
=+.||+|.| ...|++||.|+|....+. ..|.+|+. -........++.. ...+.| .|.+++|.
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~ 91 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQP 91 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCC--CCCCCCCEEECCCCCCCCCCC--CCCCCEEE
T ss_conf 989898970405578998987554999888788888--74866687--887778367616766778644--47787060
No 10
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=1.00 E-value=1 Score=33.27 Aligned_cols=64 Identities=28% Similarity=0.613 Sum_probs=37.3
Q ss_pred ECCCCCCCCC----------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCCCC
Q ss_conf 8568999866----------8543018999423677999987734899887875314886378--458888842126865
Q 000519 802 TGKKCPKGLY----------GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGG--VSQPFCPYECISEKY 869 (1448)
Q Consensus 802 ~gk~CP~Gly----------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~iyv~~G--~~~~~CpY~C~sdk~ 869 (1448)
-=+.||+|+| ...|++||.|+|.....+ ...|.+|.. -........++.. ...+.| .|.+++|
T Consensus 19 CC~~CppG~~~~~~Ct~~~~~t~C~~C~~gty~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dt~C--~C~~G~y 93 (162)
T 1ext_A 19 CCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENH-LRHCLSCSK--CRKEMGQVEISSCTVDRDTVC--GCRKNQY 93 (162)
T ss_dssp EEECBCTTEEEEECCSSTTSCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTCEEEECCBTTBCCEE--ECCTTEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCCCCE
T ss_conf 99889998604566678888961333989865146677-775524378--877789788713668888786--5989852
Q ss_pred C
Q ss_conf 6
Q 000519 870 R 870 (1448)
Q Consensus 870 ~ 870 (1448)
.
T Consensus 94 ~ 94 (162)
T 1ext_A 94 R 94 (162)
T ss_dssp E
T ss_pred E
T ss_conf 4
Done!