Query 000521
Match_columns 1446
No_of_seqs 443 out of 5677
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 16:30:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000521.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_295-299//hhsearch_pdb/000521hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1584.1 108.3 1203 218-1439 1-1303(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 1260.9 101.0 1138 274-1439 47-1257(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 734.0 58.1 499 936-1438 137-639 (1321)
4 3g5u_A MCG1178, multidrug resi 1.0 1 1 702.3 47.8 500 935-1439 108-612 (1284)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 667.2 53.8 546 885-1438 28-576 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 665.8 59.5 556 877-1439 6-565 (587)
7 3b60_A Lipid A export ATP-bind 1.0 1 1 646.5 64.9 546 885-1439 16-566 (582)
8 4a82_A Cystic fibrosis transme 1.0 1 1 645.0 54.7 547 885-1438 5-562 (578)
9 3b5x_A Lipid A export ATP-bind 1.0 1 1 643.0 66.2 545 885-1438 16-565 (582)
10 2yl4_A ATP-binding cassette SU 1.0 1 1 632.1 65.4 547 886-1439 11-569 (595)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1584.07 Aligned_cols=1203 Identities=17% Similarity=0.190 Sum_probs=902.5
Q ss_pred HHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCHHHHHHHHH-HHHHHHHHHH
Q ss_conf 9980014-9888789989999999148999999999983111-------------89983079999999-7596999999
Q 000521 218 VMNRGVI-KQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSC-------------NCTNPSLVRAICCA-YGYPYICLGL 282 (1446)
Q Consensus 218 l~~~g~~-~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-------------~~~~~~l~~~l~~~-~~~~~~~~~~ 282 (1446)
+++.|.+ ++|+..|.+.+.|++..+...+.+++.|.....+ ..++.++ +.+|+. -++..++.++
T Consensus 1 ~~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~Lfrya~~~d~~l~~~ 79 (1321)
T 4f4c_A 1 MLRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSI-PQLYRYTTTLEKLLLFI 79 (1321)
T ss_dssp ---CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCH-HHHTTTCCHHHHHHHHH
T ss_pred CCCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCH-HHHHHCCCHHHHHHHHH
T ss_conf 98773100687635445679501110000113454243554334310012232025687799-99731567678999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHCC-------C--------CC-CH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999---999999998425-------8--------88-24-----79999999999999999999999999
Q 000521 283 LKVVNDSIGFAGP---LLLNKLIKFLQQ-------G--------SG-HL-----DGYVLAIALGLTSILKSFFDTQYSFH 338 (1446)
Q Consensus 283 ~~l~~~~~~~~~P---~ll~~li~~~~~-------~--------~~-~~-----~g~~l~~~l~l~~~~~~~~~~~~~~~ 338 (1446)
--++..+...+.| +++.++++.+.+ . .. .. .-..++..++.+.++..++...+.+.
T Consensus 80 g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 159 (1321)
T 4f4c_A 80 GTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTC 159 (1321)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999701000145430003443100168999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999984499332477996699999996799999999-9999999799999999999866767999
Q 000521 339 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAF 417 (1446)
Q Consensus 339 ~~r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~ivnLms~D~~ri~~~~-~~~~~lw~~pi~i~i~~~lL~~~lG~a~ 417 (1446)
....+.|+-..+...+|+|.++++....++.++|+++|.+++|++++.+++ ..+..++..++.++.++.+++..-..-+
T Consensus 160 ~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~ 239 (1321)
T 4f4c_A 160 YLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLT 239 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999788989987998489999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999995489999819279999999999999999999999999
Q 000521 418 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 497 (1446)
Q Consensus 418 l~g~~v~~~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~gwe~~~~~~i~~~R~~El~~~~~~~~l~ 497 (1446)
++.++++.+..++..++++++.+.+++.++..+++.+.++|+++|||+||+|+||+.+.++..+..++..+...+.....
T Consensus 240 lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1321)
T 4f4c_A 240 LVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFL 319 (1321)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998399999821429999999999999999999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999979--999999999998199877868999999999999999999999999999999999999972898874
Q 000521 498 AWCVFFWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 575 (1446)
Q Consensus 498 ~~~~~~~~~~~~--~~~~~tf~~y~~~~~~L~~~~~Ftslsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e~~ 575 (1446)
+........... ++.++.++.+.+.++.++++.+|+.+.++..+..|+..++..++.+.++.+|++||.+||+.++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 399 (1321)
T 4f4c_A 320 GISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVI 399 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999999999959986999999999999999999989999999999999999999997178534
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 24431029998545798667888845999800787047885333554100025840996999995899947899999864
Q 000521 576 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1446)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailG 655 (1446)
+........+ .+.+..|+++|++|+|++.++.++ |+|+||++++|+.++||||+|||||||+++|+|
T Consensus 400 ~~~~~~~~~~----------~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 400 DSSSKAGRKD----------MKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp SCSSSCCCCC----------CCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCCCCCCCCC----------CCCCCCEEEEEEEEECCCCCCCCE---EECEEEEECCCCEEEEEECCCCCHHHHHHHHCC
T ss_conf 5666556567----------788876799985540799998743---333188622882789980589857788887545
Q ss_pred CCCCCCCEEEEEC-------------EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCC
Q ss_conf 7567770899809-------------0999838888888448899714999-9945699999981550778511599732
Q 000521 656 EMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMA 721 (1446)
Q Consensus 656 e~~~~~G~v~~~g-------------~iay~~Q~pwl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T 721 (1446)
++++.+|+|.++| +||||+|+|||+|+||||||+||++ .+++++.++++.|++++|++.||+||+|
T Consensus 467 ~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T 546 (1321)
T 4f4c_A 467 YYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNT 546 (1321)
T ss_dssp SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSS
T ss_pred CCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCC
T ss_conf 65164486157996501125999850466658753320786167886415522099999999875654688708888860
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEE
Q ss_conf 20279875524899999999987139999998078656059999999999641956689659998257104541798999
Q 000521 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801 (1446)
Q Consensus 722 ~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~ 801 (1446)
+|||+|.+||||||||||||||+|++|+|++||||+||||+++++.+ ++++.+ ++++||+|++||+++.++.||+|++
T Consensus 547 ~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i-~~~l~~-~~~~~T~iiiaHrls~i~~aD~Iiv 624 (1321)
T 4f4c_A 547 LVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV-QQALDK-AAKGRTTIIIAHRLSTIRNADLIIS 624 (1321)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH-HHHHHH-HHTTSEEEEECSCTTTTTTCSEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHH-HHCCCEEEEECCCHHHHHHCCEEEE
T ss_conf 75589887777787999999987259998998455446887899999-999999-8479889997363878986898999
Q ss_pred EECCEEEEECCHHHHHHCCCCCCCCCCCCCHHHHHHHH--H--HHHCC---C---C-------HHHHHHHH---------
Q ss_conf 94987999529668873003686545433101222223--2--11012---4---0-------24555321---------
Q 000521 802 MDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ--E--MRTNA---S---S-------ANKQILLQ--------- 855 (1446)
Q Consensus 802 l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~---~---~-------~~~~~~~~--------- 855 (1446)
|++|+|+++|+|+||++.++.+.++..........+.. . ..... . . ...+....
T Consensus 625 l~~G~ive~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1321)
T 4f4c_A 625 CKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGS 704 (1321)
T ss_dssp EETTEEEEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC---------------------------------------
T ss_pred EECCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 63996513689999998532799999962212222332334433223211122222342222222110221110132124
Q ss_pred -------CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -------01346677414678899978517500576999874121-7899999999999999984356676643113588
Q 000521 856 -------EKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSYWVDTTGS 927 (1446)
Q Consensus 856 -------~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~ 927 (1446)
+++.............++.++.+.....+|+.|....+ +....+.++...+.........+|+..|.+....
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 784 (1321)
T 4f4c_A 705 ITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAG 784 (1321)
T ss_dssp -----------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56774025777531540389999999970786310999999987789999999999999999999999999999987517
Q ss_pred C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCHHH
Q ss_conf 7--877650257899999999999999999999999999999999999999874497445457--773379999870053
Q 000521 928 S--QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQ--TPGGRILNRFSSDLY 1003 (1446)
Q Consensus 928 ~--~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~--~~~G~ilnRfs~D~~ 1003 (1446)
. .......+|.++|++++++..++.++..+++.+.+.+.+.++|.+++++++++|++|||+ +|+|+++|||++|++
T Consensus 785 ~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~ 864 (1321)
T 4f4c_A 785 NPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVP 864 (1321)
T ss_dssp CSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHH
T ss_conf 93455667899999999999999999999999999999999999999998887349933321678884888850250599
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
Q ss_conf 41110279999999999977886525876868899999999999999999989989999999986206137679874222
Q 000521 1004 MIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNG 1083 (1446)
Q Consensus 1004 ~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~G 1083 (1446)
.+|..++..+..++..++.+++.++++.+..|++.++++++..++.+...++.+..+.......++.++...++.|+++|
T Consensus 865 ~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 944 (1321)
T 4f4c_A 865 NLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIEN 944 (1321)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999986537777022137868999999998889999999999999999999999988898899999962
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 38986539389999999999999999999999998568999999999999999999998515888767632999999999
Q 000521 1084 SSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1163 (1446)
Q Consensus 1084 l~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~~~wl~~~l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~ 1163 (1446)
+.+||+|++|+.+.+++.+.++..++..+.....+.+.......+..+...++..+..... .......+++.+...+.
T Consensus 945 i~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv--~~~~~~~~~~~~~~~~~ 1022 (1321)
T 4f4c_A 945 VRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALI--ITDPPTMQPMRVLRVMY 1022 (1321)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT--SSSSCSSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCHHHHHHHHH
T ss_conf 7988861414889999999999999999999999999999999999999999998757887--53765421478999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCCEEEEE
Q ss_conf 999999999999999999999868999999984187100026789999999885189999999844998-8422001399
Q 000521 1164 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFT 1242 (1446)
Q Consensus 1164 ~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~isl~ 1242 (1446)
+......+++.+...+.+++..+.+++|+.++.+.++|... ...+++.||..|.|+|+||+|+|+++. .+||+|+||+
T Consensus 1023 ~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~ 1101 (1321)
T 4f4c_A 1023 AITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDS-LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFS 1101 (1321)
T ss_dssp HHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCT-TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEE
T ss_conf 99877889999999999999999999989998607665777-66778788888818999879857999988212451699
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCC---CC
Q ss_conf 748929999979998788999997257879974699969617999947671460899177777787578723979---99
Q 000521 1243 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HM 1319 (1446)
Q Consensus 1243 I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~---~~ 1319 (1446)
|+|||+||||||||||||||+++|+|+|+|++|+|.|||+||+++++++||++|++|||||++|+||||+||.++ .+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~ 1181 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSS 1181 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTT
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCC
T ss_conf 88989999989999819999999956863899789999998654999999854599878997327239999745499999
Q ss_pred CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 9917799999980199999958--99405414999999459999999998624998899856677989997999999999
Q 000521 1320 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397 (1446)
Q Consensus 1320 ~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~ 1397 (1446)
++|+++|+|+++++++++|+++ ||||.|+|+|.+||||||||+|||||++|+|+|||||||||+||.+||+.||++|+
T Consensus 1182 ~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~ 1261 (1321)
T 4f4c_A 1182 VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD 1261 (1321)
T ss_dssp SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999829849997176789998238891569999999999999971799899968111578999999999999
Q ss_pred HHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 836995799860690267511979999497899970440012
Q 000521 1398 SECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1398 ~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+.+++||+|+||||++|+++||+|+|||+|+|+|+|+|..+.
T Consensus 1262 ~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1262 RAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp TTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHH
T ss_pred HHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 973999899960689999969999999898999988889998
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=1260.88 Aligned_cols=1138 Identities=17% Similarity=0.200 Sum_probs=819.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------C------------C-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 596999999999999999999999999999842588-------8------------2-4799999999999999999999
Q 000521 274 GYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS-------G------------H-LDGYVLAIALGLTSILKSFFDT 333 (1446)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-------~------------~-~~g~~l~~~l~l~~~~~~~~~~ 333 (1446)
++.++...+..++..++....|+++..+++.+.... . . .....++..++.+.++..++..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1284)
T 3g5u_A 47 RLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAY 126 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998613444332222221111100244688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--
Q ss_conf 9999999999999999999999998449933247799669999999679999999999-9999979999999999986--
Q 000521 334 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLY-- 410 (1446)
Q Consensus 334 ~~~~~~~r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~ivnLms~D~~ri~~~~~~-~~~lw~~pi~i~i~~~lL~-- 410 (1446)
...+...+.+.++-..+...+|+|.++++....++.++|+++|.++.|++.+.+.... +..+....+.++.++.++.
T Consensus 127 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 206 (1284)
T 3g5u_A 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTR 206 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998699899756887789999998899999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf -6767999999999999999999999999999999999999999999999954899998192799999999999999999
Q 000521 411 -TQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKH 489 (1446)
Q Consensus 411 -~~lG~a~l~g~~v~~~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~gwe~~~~~~i~~~R~~El~~ 489 (1446)
+.+.+.+ ++++.++..+..++.+.+.+..++..+..++..+...|.++||++||.|++|+.+.++..+.-++-.+.
T Consensus 207 ~~~l~l~~---l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~ 283 (1284)
T 3g5u_A 207 GWKLTLVI---LAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRL 283 (1284)
T ss_dssp TSSSHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999999---999999999999999999999999999999999999999978799998465399999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999997--99999999999981998778689999999999999999999999999999999999999
Q 000521 490 LSTRKYLDAWCVFFWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 567 (1446)
Q Consensus 490 ~~~~~~l~~~~~~~~~~~~--~~~~~~tf~~y~~~~~~L~~~~~Ftslsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~ 567 (1446)
..+..........+..... ..+..++++.+.+..+.++++.+++.+..+.....|+..+...+..+.++.++.+|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 363 (1284)
T 3g5u_A 284 GIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363 (1284)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999299889999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHH
Q ss_conf 72898874244310299985457986678888459998007870478853335541000258409969999958999478
Q 000521 568 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647 (1446)
Q Consensus 568 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKS 647 (1446)
+++.++..+........+ ......++++|++|+|+...+.++ |+|+||++++|+.++|+||+|||||
T Consensus 364 ~l~~~~~~~~~~~~~~~~----------~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKS 430 (1284)
T 3g5u_A 364 IIDNKPSIDSFSKSGHKP----------DNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKS 430 (1284)
T ss_dssp TTSCCCCCSSCCSSCCCC----------TTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHH
T ss_pred HHCCCCCCCCCCCCCCCC----------CCCCCEEEEEEEEEECCCCCCCCC---EECCEEEECCCCEEEEECCCCCCHH
T ss_conf 972898677666567777----------777771899998997699998710---1254589759988999899999799
Q ss_pred HHHHHHHCCCCCCCCEEEEEC-------------EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHH
Q ss_conf 999998647567770899809-------------0999838888888448899714999-99456999999815507785
Q 000521 648 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDIS 713 (1446)
Q Consensus 648 tLL~ailGe~~~~~G~v~~~g-------------~iay~~Q~pwl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Dl~ 713 (1446)
||+++|+|++++.+|+|.++| .|+||+|+||++++||+|||.+|.+ .+++++.++++.|++.++++
T Consensus 431 Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH
T ss_conf 99999807889997389999998775799999865489868875377669999745798999999999999829699997
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
Q ss_conf 11599732202798755248999999999871399999980786560599999999996419566896599982571045
Q 000521 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 793 (1446)
Q Consensus 714 ~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l 793 (1446)
.+|+|++|.+||+|.+|||||||||+||||+|++|+|++||||+|+||+++++.+.+. +.. +.+++|+|++||+++.+
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~-~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA-LDK-AREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHH-HHH-HHTTSEEEEECSCHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHH
T ss_conf 4656334501478786599999999999999529998999798777799999999999-999-73999899994077899
Q ss_pred HHCCEEEEEECCEEEEECCHHHHHHCCCCCCCCCCCCCHHHHHH--HH----HHHH--CC-C-CHHHHHHHHCCCC-C--
Q ss_conf 41798999949879995296688730036865454331012222--23----2110--12-4-0245553210134-6--
Q 000521 794 SAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ--KQ----EMRT--NA-S-SANKQILLQEKDV-V-- 860 (1446)
Q Consensus 794 ~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~--~~----~~~~--~~-~-~~~~~~~~~~~~~-~-- 860 (1446)
..||+|++|++|+++++|+++++.+..+.+.++........... .. .... .. . ............. .
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSI 668 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC------------------------------------------
T ss_pred HCCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 74998999989999997889999867877999999743002211133333322222344333333332000345433344
Q ss_pred -CCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCC
Q ss_conf -67741467889997851--75005769998741217899999999999999984356676643113588787----765
Q 000521 861 -SVSDDAQEIIEVEQRKE--GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQT----KYS 933 (1446)
Q Consensus 861 -~~~~~~~~~~~~e~~~~--g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~----~~~ 933 (1446)
...+.......++..+. ....+..+..|.+.. |..+.+.+++.++.........+++..|.+....... ...
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 747 (1284)
T 3g5u_A 669 CGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQN 747 (1284)
T ss_dssp ---------------CCCCCSCCCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred CCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 56422332110245553136625899999984515-79999999999999999999999999999998556850336779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHCHHHHHCCCHHH
Q ss_conf 025789999999999999999999999999999999999999987449744545--777337999987005341110279
Q 000521 934 TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD--QTPGGRILNRFSSDLYMIDDSLPF 1011 (1446)
Q Consensus 934 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~--~~~~G~ilnRfs~D~~~id~~l~~ 1011 (1446)
...|..+|.+++++..++.+++.+.+.+.+.+...++|.+++++++++|++||+ .+++|+++||+++|++.++..++.
T Consensus 748 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~ 827 (1284)
T 3g5u_A 748 SNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS 827 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999983998887578998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCHHH
Q ss_conf 99999999997788652587686---889999999999999999998998--9999999986206137679874222389
Q 000521 1012 ILNILLANFVGLLGIAVVLSYVQ---VFFLLLLVPFWFIYSKLQFFYRST--SRELRRLDSVSRSPIYASFTETLNGSST 1086 (1446)
Q Consensus 1012 ~l~~~~~~~~~~i~~~~~i~~~~---~~~~~~~~pl~~~~~~i~~~y~~~--sr~l~rl~~~~~spl~~~~~Etl~Gl~t 1086 (1446)
.+..++..+..+++.++++.+.. .+++++.+|+.+++..++..+.+. .+..+.. +....++.|+++|+.+
T Consensus 828 ~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~l~gi~t 902 (1284)
T 3g5u_A 828 RLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKEL-----EGSGKIATEAIENFRT 902 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999996999999999999999999999999999999999999-----9999999999988999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 86539389999999999999999999999998568999999999999999999998515888767632999999999999
Q 000521 1087 IRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1166 (1446)
Q Consensus 1087 Iraf~~e~~~~~~~~~~ld~~~~~~~~~~~~~~wl~~~l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~ 1166 (1446)
||+|++|+.+.+++.+..+...+..... ..|.+....+...+.....+....++.. ....+..+.+.+...+.+..
T Consensus 903 i~a~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~-lv~~~~~~~~~~~~~~~~~~ 978 (1284)
T 3g5u_A 903 VVSLTREQKFETMYAQSLQIPYRNAMKK---AHVFGITFSFTQAMMYFSYAAAFRFGAY-LVTQQLMTFENVLLVFSAIV 978 (1284)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCSSSCSCSTTHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHH
T ss_conf 9984659999999999999999999999---9999999999999999999999999999-99909806999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCCEEEEEEEC
Q ss_conf 99999999999999999986899999998418710002678999999988518999999984499-88422001399748
Q 000521 1167 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEG 1245 (1446)
Q Consensus 1167 ~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~ 1245 (1446)
.....+..+...+.++.....+++|+.++.+.+++.........+.++..|.|+|+||+++|+.. ..++|+|+||+|++
T Consensus 979 ~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~ 1058 (1284)
T 3g5u_A 979 FGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKK 1058 (1284)
T ss_dssp HHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECC
T ss_conf 99999999999999999999999999999838876666555665456777857999989977999987002030599769
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC---CCCH
Q ss_conf 9299999799987889999972578799746999696179999476714608991777777875787239799---9991
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDD 1322 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~---~~sd 1322 (1446)
||++||||+||||||||+++|+|+++|++|+|.+||.|+++++++.+|+++++|||||.+|++|||+|+.++. ..++
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~ 1138 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY 1138 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCH
T ss_conf 98899988999978999999946867899779899998000789999702689877874066669999746687789999
Q ss_pred HHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7799999980199999958--99405414999999459999999998624998899856677989997999999999836
Q 000521 1323 LKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400 (1446)
Q Consensus 1323 ~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f 1400 (1446)
+++++++++++++++++.+ |+||.++|+|.+||||||||+|||||++++|+||+||||||++|.++++.+++.|++..
T Consensus 1139 ~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~ 1218 (1284)
T 3g5u_A 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR 1218 (1284)
T ss_dssp HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999839599997270424561178889338999999999999974999999868755579999999999999867
Q ss_pred CCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 995799860690267511979999497899970440012
Q 000521 1401 KGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1401 ~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+++|+|+||||++++.+||+|+||++|+++|.|+|..+.
T Consensus 1219 ~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1219 EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257 (1284)
T ss_dssp SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHH
T ss_pred CCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHH
T ss_conf 999899995587999809989999899899977899998
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=734.03 Aligned_cols=499 Identities=19% Similarity=0.222 Sum_probs=420.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHH
Q ss_conf 57899999999999999999999999999999999999999874497445457773379999870053411102799999
Q 000521 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1015 (1446)
Q Consensus 936 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~ 1015 (1446)
.+...+++++++..++.++..+++.+.+.+...+++.++++++++.|++|||++++|+++||+++|++.+.+.+...+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999997889899879984899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHH
Q ss_conf 99999977886525876868899999999999999999989989999999986206137679874222389865393899
Q 000521 1016 LLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY 1095 (1446)
Q Consensus 1016 ~~~~~~~~i~~~~~i~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~ 1095 (1446)
++..++..++.++++.+..|.+.++.+....++..+..++.+..+...+......+...+++.|+++|+++||+|++|+.
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999999999989999999999999999999999999999999999999999999999983999998214299
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998568999999999999999999998515888767632999999999999999999999
Q 000521 1096 FMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1175 (1446)
Q Consensus 1096 ~~~~~~~~ld~~~~~~~~~~~~~~wl~~~l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l 1175 (1446)
+.+++.+..+...+..........+......++..+...++..+..... ..+..++|.+..++.+...+..++..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v----~~g~lt~g~~~~~~~~~~~~~~~l~~~ 372 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWV----HDGSLNFGDMLTTFSSVMMGSMALGLA 372 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999----959986999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCCEEEEEEECCCEEEEECC
Q ss_conf 99999999986899999998418710002678999999988518999999984499-88422001399748929999979
Q 000521 1176 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGR 1254 (1446)
Q Consensus 1176 ~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGr 1254 (1446)
...+..+.....+.+|+.++++.+++..........+.+.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+
T Consensus 373 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 373 GPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEEC
T ss_conf 99999999999999999999717853456665565677888767999855407999987433331886228827899805
Q ss_pred CCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCC
Q ss_conf 99878899999725787997469996961799994767146089917777778757872397999-99177999999801
Q 000521 1255 TGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCH 1333 (1446)
Q Consensus 1255 TGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~-~sd~~i~~aL~~~~ 1333 (1446)
||||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||++|+|||||||..+.+ .+|+++++|++.|+
T Consensus 453 sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~ 532 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532 (1321)
T ss_dssp SSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 89857788887545651644861579965011259998504666587533207861678864155220999999998756
Q ss_pred HHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 99999958--9940541499999945999999999862499889985667798999799999999983699579986069
Q 000521 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411 (1446)
Q Consensus 1334 l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHR 1411 (1446)
++++++.+ |+||.|||+|.+||||||||+|||||++++|+|+|||||||+||.+||+.+++.|++..+++|+|+||||
T Consensus 533 l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp CHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred CHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 54688708888860755898877777879999999872599989984554468878999999999998479889997363
Q ss_pred CHHHHHCCEEEEEECCEEEEEECCCHH
Q ss_conf 026751197999949789997044001
Q 000521 1412 ISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1412 l~ti~~~D~I~vl~~G~ive~~~~~~~ 1438 (1446)
++++.+||+|+||++|+|+|.|++..+
T Consensus 613 ls~i~~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 613 LSTIRNADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp TTTTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHCCEEEEEECCEEECCCCHHHH
T ss_conf 878986898999639965136899999
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=702.25 Aligned_cols=500 Identities=20% Similarity=0.221 Sum_probs=418.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHH
Q ss_conf 25789999999999999999999999999999999999999987449744545777337999987005341110279999
Q 000521 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1014 (1446)
Q Consensus 935 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~ 1014 (1446)
..|.++|++++++..++.+++.+.+.+.+.+...++|.++++++++.|++||+++++|+++||+++|++.+++.++..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999869989975688778999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHH
Q ss_conf 99999997788652587686889999999999999999998998999999998620613767987422238986539389
Q 000521 1015 ILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED 1094 (1446)
Q Consensus 1015 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~ 1094 (1446)
.++..++.+++.++++.+..|.+.++++....++..+..++.+..++..+...++.+++.+++.|+++|+++||+|++|+
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHH
T ss_conf 99999999999999999998999999999999999999999999999999999999999999999997879999846539
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998568999999999999999999-9985158887676329999999999999999999
Q 000521 1095 YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1173 (1446)
Q Consensus 1095 ~~~~~~~~~ld~~~~~~~~~~~~~~wl~~~l~~i~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~ 1173 (1446)
.+.+++.+..+.+.+..........+......++..+...++... ..+.. .+..++|.+..++.+......++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-----~g~~~~g~~~~~~~~~~~~~~~~~ 342 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVI-----SKEYSIGQVLTVFFSVLIGAFSVG 342 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSSSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999-----299889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCCEEEEEEECCCEEEEE
Q ss_conf 9999999999986899999998418710002678999999988518999999984499-884220013997489299999
Q 000521 1174 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIV 1252 (1446)
Q Consensus 1174 ~l~~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIv 1252 (1446)
.+...+..++....+++|+.++.+.+++............+.+|.|+|+||+++|+++ ..++|+|+||+|++||++|||
T Consensus 343 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~iv 422 (1284)
T 3g5u_A 343 QASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALV 422 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEE
T ss_conf 99999999999999999999997289867766656777777777189999899769999871012545897599889998
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHH
Q ss_conf 799987889999972578799746999696179999476714608991777777875787239799-9991779999998
Q 000521 1253 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEK 1331 (1446)
Q Consensus 1253 GrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~~i~~aL~~ 1331 (1446)
|+||||||||+++|.|+++|++|+|.+||.|+++++++++|+++++|||||++|++|||||+.++. ..++++++++++.
T Consensus 423 G~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~ 502 (1284)
T 3g5u_A 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKE 502 (1284)
T ss_dssp CCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999799999998078899973899999987757999998654898688753776699997457989999999999998
Q ss_pred CCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 0199999958--99405414999999459999999998624998899856677989997999999999836995799860
Q 000521 1332 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1409 (1446)
Q Consensus 1332 ~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~Ia 1409 (1446)
++++++++.+ |+||.++|+|.+||||||||+|||||++++|+||+||||||+||.+|++.+++.+++..+++|+|+||
T Consensus 503 ~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~it 582 (1284)
T 3g5u_A 503 ANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIA 582 (1284)
T ss_dssp TTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 29699997465633450147878659999999999999952999899979877779999999999999973999899994
Q ss_pred CCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 690267511979999497899970440012
Q 000521 1410 HRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1410 HRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
||++++.+||+|+||++|+++|.|++..+.
T Consensus 583 H~l~~i~~~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 583 HRLSTVRNADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp SCHHHHTTCSEEEECSSSCCCCEECHHHHH
T ss_pred CCHHHHHCCCEEEEEECCEEEEECCHHHHH
T ss_conf 077899749989999899999978899998
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=667.23 Aligned_cols=546 Identities=25% Similarity=0.341 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987412178999999999999999843566766431135887877650257899999999999999999999999999
Q 000521 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSL 964 (1446)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 964 (1446)
...|++...+. +.+.+++.++..+.....+++++.+++.............++.+++++.++..++.++..+.....+.
T Consensus 28 l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (598)
T 3qf4_B 28 LLGYLRPHTFT-LIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQ 106 (598)
T ss_dssp HGGGTGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999-99999999999999999999999999999736888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999987449744545777337999987005341110279999999999977886525876868899999999
Q 000521 965 RAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044 (1446)
Q Consensus 965 ~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~pl 1044 (1446)
+...++|.++++++++.|++||+++++|+++||+++|++.+++.+...+..++...+.+++.++++.+..|++.++.+..
T Consensus 107 ~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~ 186 (598)
T 3qf4_B 107 DVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSI 186 (598)
T ss_dssp HHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999779999976888899999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998998999999998620613767987422238986539389999999999999999999999998568999
Q 000521 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLR 1124 (1446)
Q Consensus 1045 ~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~~~wl~~~ 1124 (1446)
..++..+..++.+..++..+...+..+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+..........+....
T Consensus 187 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (598)
T 3qf4_B 187 VPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPL 266 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999973799999748709999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999851588876763299999999999999999999999999999986899999998418710002
Q 000521 1125 LQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC 1204 (1446)
Q Consensus 1125 l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~~~E~~~ 1204 (1446)
.+++..+...++..+..... ..+..++|.+...+.+...+..++..+...+.+++....+++|+.++.+.++|...
T Consensus 267 ~~~~~~~~~~~~~~~g~~l~----~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 342 (598)
T 3qf4_B 267 MNMVNNLGFALISGFGGWLA----LKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD 342 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHG----GGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999999999----85997899999999999999999999999999999999999999999768877777
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 67899999998851899999998449988422001399748929999979998788999997257879974699969617
Q 000521 1205 GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284 (1446)
Q Consensus 1205 ~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1284 (1446)
....+.++..|.|+++||+++|+++ .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.|+
T Consensus 343 --~~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i 419 (598)
T 3qf4_B 343 --PDAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419 (598)
T ss_dssp --SSCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred --CCCCCCCCCCCEEEEEEEEEECCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEH
T ss_conf --7777777777718999989977999-8601222799869988999899999699999999458579980899999983
Q ss_pred CCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHH
Q ss_conf 99994767146089917777778757872397999-9917799999980199999958--99405414999999459999
Q 000521 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1285 ~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~-~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQl 1361 (1446)
++++.+++|++++++||||.+|++|+|||+.++.. .++++++++++.+++.++++.+ |+|+.++|+|.+||||||||
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qr 499 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHH
T ss_pred HHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHH
T ss_conf 01889999841089907982324639999744799999999999999969788897464532364227889879999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHH
Q ss_conf 99999862499889985667798999799999999983699579986069026751197999949789997044001
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1362 l~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~ 1438 (1446)
+|||||++++|+|++||||||++|.++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|..+
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHH
T ss_conf 99999996499999998976679999999999999998089989999427789971998999989999987789999
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=665.77 Aligned_cols=556 Identities=21% Similarity=0.274 Sum_probs=437.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17500576999874121789999999999999998435667664311358878776502578999999999999999999
Q 000521 877 EGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRA 956 (1446)
Q Consensus 877 ~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 956 (1446)
.|...++.++.|++...+.... .+++.++..++....+++++++++.............+...++++.++..++..+..
T Consensus 6 ~g~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (587)
T 3qf4_A 6 GGGGGSKTLARYLKPYWIFAVL-APLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCT 84 (587)
T ss_dssp --CCCCCCGGGGTGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9853499999999999999999-999999999999999999999999987369879999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999874497445457773379999870053411102799999999999778865258768688
Q 000521 957 FSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVF 1036 (1446)
Q Consensus 957 ~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~ 1036 (1446)
+...+.+.+...++|.++++++++.|+.||+++++|+++||+++|++.+++.+...+..++...+.+++.++++.+..|.
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999997889799765888999999999999999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999989989999999986206137679874222389865393899999999999999999999999
Q 000521 1037 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116 (1446)
Q Consensus 1037 ~~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~ 1116 (1446)
+.++++....++..+..++.+..+...+...+..+.+.+++.|+++|+++||+|++|+.+.+++.+..+...+.......
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999855999998621499999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98568999999999999999999-99851588876763299999999999999999999999999999986899999998
Q 000521 1117 ASLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1195 (1446)
Q Consensus 1117 ~~~wl~~~l~~i~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~ 1195 (1446)
...+......++..+...++..+ ..... .+..+.|.+..++.+...+..++..+...+..+.....+.+|+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~-----~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~ 319 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVR-----NNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEV 319 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999998-----4993899999999999999999999999999999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 41871000267899999998851899999998449988422001399748929999979998788999997257879974
Q 000521 1196 MDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1446)
Q Consensus 1196 ~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1275 (1446)
.+.+++..... .+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|
T Consensus 320 l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 320 LNEKPAIEEAD-NALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp HHCCCSCCCCT-TCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred HCCCCCCCCCC-CCCCCCCCCCCEEEEEEEEECCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 76897657887-76566888880799788998489997642111799869988999899999799999999278669986
Q ss_pred EEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCC
Q ss_conf 6999696179999476714608991777777875787239799-99917799999980199999958--99405414999
Q 000521 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1352 (1446)
Q Consensus 1276 ~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~ 1352 (1446)
+|.+||+|+++++.+++|++++++||+|.+|++|+|||+.++. ..++++++++++.+++.++++.+ |+|+.+++.|.
T Consensus 399 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~ 478 (587)
T 3qf4_A 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478 (587)
T ss_dssp EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSC
T ss_pred EEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCC
T ss_conf 79899998340789999841389778986767559999852488999999999999968499997565312127518989
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEE
Q ss_conf 99945999999999862499889985667798999799999999983699579986069026751197999949789997
Q 000521 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCI 1432 (1446)
Q Consensus 1353 ~LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~ 1432 (1446)
+||||||||++||||++++|+|++||||||++|.++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.
T Consensus 479 ~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGF 558 (587)
T ss_dssp SSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEE
T ss_conf 92999999999999997299999997975447999999999999986799989998227688981998999989989997
Q ss_pred ECCCHHH
Q ss_conf 0440012
Q 000521 1433 SFICRYF 1439 (1446)
Q Consensus 1433 ~~~~~~~ 1439 (1446)
|++..+.
T Consensus 559 g~~~el~ 565 (587)
T 3qf4_A 559 GTHKELL 565 (587)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
T ss_conf 8899998
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=646.51 Aligned_cols=546 Identities=23% Similarity=0.297 Sum_probs=450.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999874121789999999999999998435667664311358878776502578-9999999999999999999999999
Q 000521 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYL-VVLCIFCMFNSFLTLVRAFSFAFGS 963 (1446)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l-~~~~~l~~~~~~~~~~~~~~~~~~~ 963 (1446)
+..|++...+... +.+++.++........+++++++++..... .......++ ..++++.++..++.....+.....+
T Consensus 16 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (582)
T 3b60_A 16 LWPTIAPFKAGLI-VAGIALILNAASDTFMLSLLKPLLDDGFGK-TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVS 93 (582)
T ss_dssp HHHHHGGGHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-999999999999999999999999988436-86579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998744974454577733799998700534111027999999999997788652587686889999999
Q 000521 964 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043 (1446)
Q Consensus 964 ~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~p 1043 (1446)
.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++..++.++++.+..|++.++.+.
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 173 (582)
T 3b60_A 94 GKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVV 173 (582)
T ss_dssp HHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999980999997889865899999987999999999999999999999999999999980999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899899999999862061376798742223898653938999999999999999999999999856899
Q 000521 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1123 (1446)
Q Consensus 1044 l~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~~~wl~~ 1123 (1446)
...++..+..++.+..++..+...+..+++.+++.|+++|+.+||+|++|+.+.+++.+..+...+........+.|...
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3b60_A 174 LAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDP 253 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999619999983768999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999985158887676329999999999999999999999999999998689999999841871000
Q 000521 1124 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL 1203 (1446)
Q Consensus 1124 ~l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~~~E~~ 1203 (1446)
..+++..+...++..+.. . ....+..+.|.+...+.++..+..++..+...+.++.....+++|+.++.+.++|..
T Consensus 254 ~~~~~~~~~~~~~~~~g~---~-~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 254 IIQLIASLALAFVLYAAS---F-PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHH---S-SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHH---H-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999999---9-998499989999999999999999999999999999999999999999975998766
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 26789999999885189999999844998842200139974892999997999878899999725787997469996961
Q 000521 1204 CGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283 (1446)
Q Consensus 1204 ~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d 1283 (1446)
. .+.+.++..|.|+++||+++|+++..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.|
T Consensus 330 ~---~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 330 E---GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp C---CCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred C---CCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEE
T ss_conf 7---7777778888479998899739999744156159976999899989999989999999861068989769799998
Q ss_pred CCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHH
Q ss_conf 79999476714608991777777875787239799--99917799999980199999958--994054149999994599
Q 000521 1284 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQR 1359 (1446)
Q Consensus 1284 i~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~--~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQr 1359 (1446)
+++++.+++|++++++||+|.+|++|+|||+.++. ..++++++++++.+++.++++.+ |+|+.++++|.+||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred CCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf 23069999996080880687477878999985459999899999999998497999984504114511479887899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 99999998624998899856677989997999999999836995799860690267511979999497899970440012
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1360 Qll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
||+++|||++++|+|++||||||++|.++++.+++.+++..+++|+|+|+||++++..||+|++|++|+++|.|++...+
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999999972899899978655579899999999999996799799994547789859989999788898845899998
No 8
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=645.03 Aligned_cols=547 Identities=22% Similarity=0.326 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CC-H----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987412178999999999999999843566766431135887877--65-0----25789999999999999999999
Q 000521 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTK--YS-T----SFYLVVLCIFCMFNSFLTLVRAF 957 (1446)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~--~~-~----~~~l~~~~~l~~~~~~~~~~~~~ 957 (1446)
+..|++...+..... +++.++........++.+++.++........ .. . ..+..++.++.++..++.+...+
T Consensus 5 l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (578)
T 4a82_A 5 YLQFVKPYKYRIFAT-IIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQY 83 (578)
T ss_dssp HHHHHGGGHHHHHHH-HHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999988999999999-9999999999999999999999999816871146778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998744974454577733799998700534111027999999999997788652587686889
Q 000521 958 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF 1037 (1446)
Q Consensus 958 ~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~ 1037 (1446)
...+.+.+...+++.++++++++.|++||+++++|+++||+++|++.+++.+...+..++...+..++.++++.+..|++
T Consensus 84 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 163 (578)
T 4a82_A 84 LAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKL 163 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999987899997689869999999999999999999999999999999999999999996999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999899899999999862061376798742223898653938999999999999999999999999
Q 000521 1038 LLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1117 (1446)
Q Consensus 1038 ~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~ 1117 (1446)
.++.+....++..+..++.+..++..+...+..+++.+++.|+++|+++||+|++|+.+.+++.+..+...+........
T Consensus 164 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (578)
T 4a82_A 164 TLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243 (578)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998249999981664999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8568999999999999999999-998515888767632999999999999999999999999999999868999999984
Q 000521 1118 SLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196 (1446)
Q Consensus 1118 ~~wl~~~l~~i~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~ 1196 (1446)
..+.....+.+..+...++..+ ..... .+..++|.+..++.+...+..++..+...+.++.....+++|+.++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~-----~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l 318 (578)
T 4a82_A 244 NAYSFAAINTVTDIGPIIVIGVGAYLAI-----SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999998-----59958999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 18710002678999999988518999999984499884220013997489299999799987889999972578799746
Q 000521 1197 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1446)
Q Consensus 1197 ~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1276 (1446)
+.++|.... ..+.+.++..|.|+++||+++|+++.+++|+|+||++++||++||+||||||||||+++|.|+++|++|+
T Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 319 DEDYDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp TCCCSSCCC-TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCCCCCCC-CCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 689766678-7766667778807999999975899974134337998799999998999985999999984678899967
Q ss_pred EEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCC
Q ss_conf 999696179999476714608991777777875787239799-99917799999980199999958--994054149999
Q 000521 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1353 (1446)
Q Consensus 1277 I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~ 1353 (1446)
|.+||.|+++++.+++|++++++||+|.+|++|+|||+..+. ..++++++++++.+++.++++.+ |+|+.++++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHCCCCCC
T ss_conf 99999984427899996006899289834764599998527999889999999988095999975733010253068896
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEE
Q ss_conf 99459999999998624998899856677989997999999999836995799860690267511979999497899970
Q 000521 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1354 LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~ 1433 (1446)
||||||||+++|||++++|+|++||||||++|+++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEEC
T ss_conf 79999999999999974999999978654579999999999999980899799983178999719989999899899988
Q ss_pred CCCHH
Q ss_conf 44001
Q 000521 1434 FICRY 1438 (1446)
Q Consensus 1434 ~~~~~ 1438 (1446)
+|...
T Consensus 558 ~~~el 562 (578)
T 4a82_A 558 THREL 562 (578)
T ss_dssp CHHHH
T ss_pred CHHHH
T ss_conf 89999
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=643.02 Aligned_cols=545 Identities=23% Similarity=0.320 Sum_probs=447.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998741217899999999999999984356676643113588787765025789-999999999999999999999999
Q 000521 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLV-VLCIFCMFNSFLTLVRAFSFAFGS 963 (1446)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~~~~~~~~~~~~ 963 (1446)
+..|++...+... +.+++.++..+.....+++++++++..... .......++. .++++.++..++.....+.....+
T Consensus 16 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (582)
T 3b5x_A 16 LWTYIRLYKAGLV-VSTIALVINAAADTYMISLLKPLLDEGFGN-AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVS 93 (582)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999889999999-999999999999999999999999998646-86679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998744974454577733799998700534111027999999999997788652587686889999999
Q 000521 964 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043 (1446)
Q Consensus 964 ~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~p 1043 (1446)
.+...+++.++++++++.|++||++.++|++++|+++|++.++..+...+..++...+..++.++++.+..|.+.++.+.
T Consensus 94 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 173 (582)
T 3b5x_A 94 GNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIV 173 (582)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999986999997789878999999988999999999999999999999999999999982999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999899899999999862061376798742223898653938999999999999999999999999856899
Q 000521 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1123 (1446)
Q Consensus 1044 l~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~~~wl~~ 1123 (1446)
...++..+..++.+..++..+...+..+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+........+.|...
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (582)
T 3b5x_A 174 VAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADP 253 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999519999970875999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999999999985158887676329999999999999999999999999999998689999999841871000
Q 000521 1124 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL 1203 (1446)
Q Consensus 1124 ~l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~~~E~~ 1203 (1446)
..+++..+...++..+..... ..+..++|.+...+.++..+..++..+...+.++.....+++|+.++.+.++|..
T Consensus 254 ~~~~~~~~~~~~i~~~g~~~v----~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 254 VIQMIASLALFAVLFLASVDS----IRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999999999----8599889999999999999999999999999999999999999999975897677
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 26789999999885189999999844998842200139974892999997999878899999725787997469996961
Q 000521 1204 CGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283 (1446)
Q Consensus 1204 ~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d 1283 (1446)
.. +.+.++..|.|+++||+++|+++.+++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.|
T Consensus 330 ~~---~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 330 NG---KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred CC---CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
T ss_conf 77---777777888289999899728998654004169987999899989999979999999965778999879899998
Q ss_pred CCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHH
Q ss_conf 79999476714608991777777875787239799--99917799999980199999958--994054149999994599
Q 000521 1284 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQR 1359 (1446)
Q Consensus 1284 i~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~--~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQr 1359 (1446)
+.+.+.+++|++++++||+|.+|++|+|||+..+. ..++++++++++.+++.++++.+ |+|+.++++|.+||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred HHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHH
T ss_conf 56388999964858982799053102999985668899999999999998798999984765334510688884799999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHH
Q ss_conf 9999999862499889985667798999799999999983699579986069026751197999949789997044001
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1360 Qll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~ 1438 (1446)
||+++|||++++|+|++||||||++|.++++.+++.|++..+++|+|+|+||++++..||+|++|++|+++|.|++...
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565 (582)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 9999999997499999997854468999999999999997289989999368899981998999989989997789999
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=632.06 Aligned_cols=547 Identities=23% Similarity=0.265 Sum_probs=432.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998741217899999999999999984356676643113588787-76--502578999999999999999999999999
Q 000521 886 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQT-KY--STSFYLVVLCIFCMFNSFLTLVRAFSFAFG 962 (1446)
Q Consensus 886 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~--~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 962 (1446)
..|++...+.... .+++.++........+++++++++....... .. ....++..++++.++..++...+.+.....
T Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (595)
T 2yl4_A 11 LGLAYPERRRLAA-AVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTS 89 (595)
T ss_dssp HHHHGGGHHHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998878999999-999999999999999999999999997357402667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999874497445457773379999870053411102799999999999778865258768688999999
Q 000521 963 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1042 (1446)
Q Consensus 963 ~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~ 1042 (1446)
+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++..++.++++.+..|++.++++
T Consensus 90 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 169 (595)
T 2yl4_A 90 GQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVL 169 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998199999777984889999999999999999999999999999999999999998199999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999989989999999986206137679874222389865393899999999999999999999999985689
Q 000521 1043 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1122 (1446)
Q Consensus 1043 pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~~~wl~ 1122 (1446)
....++..+...+.+..++..+...+..+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+........+.|..
T Consensus 170 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (595)
T 2yl4_A 170 SVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFF 249 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999811999998375699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999-9851588876763299999999999999999999999999999986899999998418710
Q 000521 1123 LRLQLLAAFIISFIATMA-VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1201 (1446)
Q Consensus 1123 ~~l~~i~~~~~~~~~~~~-v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~~~E 1201 (1446)
...+++..+...++..+. .... .+..++|.+...+.++..+..++..+...+.++.....+++|+.++.+.++|
T Consensus 250 ~~~~~~~~~~~~~~~~~g~~~v~-----~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 250 GATGLSGNLIVLSVLYKGGLLMG-----SAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999998-----6997899999999999999999999999999999999999999999838976
Q ss_pred CCCCCCCCCCCCCCCCC-EEEEEEEEEECCC-CCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 00267899999998851-8999999984499-884220013997489299999799987889999972578799746999
Q 000521 1202 ELCGYQSLSPDWPFQGL-IEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279 (1446)
Q Consensus 1202 ~~~~~~~~~~~wp~~g~-I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I 1279 (1446)
.......+ +..+..|. |+++||+++|+++ ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+
T Consensus 325 ~~~~~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 325 LPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SCSSCSBC-CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCCCC-CCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 67777877-77678998389998899858998881201127998499889998999997999999982585789837999
Q ss_pred CCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCC----CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCC
Q ss_conf 6961799994767146089917777778757872397999----9917799999980199999958--994054149999
Q 000521 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1353 (1446)
Q Consensus 1280 DG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~----~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~ 1353 (1446)
||.|+++++.+.+|++++++||+|.+|++|+|||+..+.. .++++++++++.+++.++++.+ |+|+.++++|.+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99981117999997322898368832687799998405877665689999999998697999974732013501688786
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEE
Q ss_conf 99459999999998624998899856677989997999999999836995799860690267511979999497899970
Q 000521 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1354 LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~ 1433 (1446)
||||||||+++|||++++|+|++||||||++|.++++.+++.+++..+++|+|+|+||++++..||+|++|++|+++|.|
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEEC
T ss_conf 89999999999999975999999988666899899999999999996599799994687899759989999899899978
Q ss_pred CCCHHH
Q ss_conf 440012
Q 000521 1434 FICRYF 1439 (1446)
Q Consensus 1434 ~~~~~~ 1439 (1446)
++....
T Consensus 564 ~~~~l~ 569 (595)
T 2yl4_A 564 KHEELL 569 (595)
T ss_dssp CSCC--
T ss_pred CHHHHH
T ss_conf 899997
Done!