Query 000523
Match_columns 1445
No_of_seqs 528 out of 5370
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 17:50:40 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000523.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_295-299//hhsearch_pdb/000523hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 679.4 53.6 832 78-1084 379-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 619.0 54.7 837 78-1084 351-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 451.6 34.3 436 166-1086 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 450.2 39.8 426 166-1083 449-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 443.0 33.7 436 166-1086 36-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 440.4 36.7 214 165-413 31-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 431.3 32.8 216 846-1098 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 424.8 31.3 201 873-1098 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 370.0 14.6 214 844-1084 413-636 (1321)
10 4a82_A Cystic fibrosis transme 1.0 1 1 337.3 17.9 213 844-1084 337-559 (578)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=679.37 Aligned_cols=832 Identities=19% Similarity=0.250 Sum_probs=423.8
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 676578999843215656699999999877521999--995069992049999982587767872689899999997665
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1445)
.++..+.++|+.++++.+++ +.+.. ..+.. ....+|+|+|+++.|+.
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~-----~~~~~-~~~~~~~~~~g~I~~~nvsF~Y~~------------------------- 427 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPV-----IDSSS-KAGRKDMKIKGDITVENVHFTYPS------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-----SSCSS-SCCCCCCCCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCCCC-CCCCCCCCCCCCEEEEEEEEECCC-------------------------
T ss_conf 99999999999999717853-----45666-556567788876799985540799-------------------------
Q ss_pred HHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEEC
Q ss_conf 4157865442464141467848929999859999779999999489899998112999968337986756---3189983
Q 000523 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYIS 232 (1445)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~---~~~~yv~ 232 (1445)
+ ....+|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.+||+++++...+ +.++||+
T Consensus 428 -----~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 428 -----R-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp -----S-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred -----C-CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCC
T ss_conf -----9-9874333318862288278998058985778888754565164---486157996501125999850466658
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78887999999999997677117874145659989999871999999978999998633344769999999990995435
Q 000523 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1445)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1445)
| |.++++.|||||+.|+. +...++.+.++|+.... + | .+..|+++.
T Consensus 499 Q-~~~Lf~~TI~eNI~~g~----~~~~~~~v~~a~~~a~l---------------------~-----~---~i~~lp~G~ 544 (1321)
T 4f4c_A 499 Q-EPALFNCTIEENISLGK----EGITREEMVAACKMANA---------------------E-----K---FIKTLPNGY 544 (1321)
T ss_dssp S-SCCCCSEEHHHHHHTTC----TTCCHHHHHHHHHHTTC---------------------H-----H---HHHHSTTTT
T ss_pred C-CCEEECCCHHHHHHHHC----CCCHHHHHHHHHHHCCC---------------------H-----H---HHHCCCCCC
T ss_conf 7-53320786167886415----52209999999987565---------------------4-----6---887088888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHC
Q ss_conf 54334644666774345689999997349852422269989998989999999999877039869999806910488305
Q 000523 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1445)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~f 392 (1445)
||.||+++.. ||||||||++|||+++.+|++++||||||+||+.++..+.++|+++. .++|+|+..| +.++...+
T Consensus 545 ~T~vGe~G~~-LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaH--rls~i~~a 619 (1321)
T 4f4c_A 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAH--RLSTIRNA 619 (1321)
T ss_dssp SSEESSSSCC-CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECS--CTTTTTTC
T ss_pred CCEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECC--CHHHHHHC
T ss_conf 6075589887-77778799999998725999899845544688789999999999984--7988999736--38789868
Q ss_pred CEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCC-HHHHHH--HHCCCHHHHHH--HHCCCCC---------C--CCC
Q ss_conf 819995597399843956799999836997899999-567998--61180224454--3103899---------8--667
Q 000523 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKG-VADFLQ--EVTSRKDQRQY--WAHKEKP---------Y--RFV 456 (1445)
Q Consensus 393 D~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~-~aDfl~--ev~s~~~~~~~--~~~~~~~---------~--~~~ 456 (1445)
|+|++|++|+++++|+++|+++- .+ .++... ......+.... ....+.. . ...
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~~-----------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMAQ-----------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQAS 688 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHTT-----------TCHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred CEEEEEECCEEECCCCHHHHHHH-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98999639965136899999985-----------3279999996221222233233443322321112222234222222
Q ss_pred CHHHHHHHHHHCHHHHH-----HHHHHCCCCCCC-CCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99899999981512233-----687513976665-3121223-4665667289999999999999961154899999999
Q 000523 457 TVQEFAEAFQSFHVGQK-----ISDELRTPFDKS-KSHRAAL-TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQ 529 (1445)
Q Consensus 457 ~~~e~~~~f~~s~~~~~-----~~~~l~~~~~~~-~~~~~~l-~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~ 529 (1445)
..++.....+.+..+.. ..++........ ...+... .......+.+. -+...+..+..++...+.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~ 760 (1321)
T 4f4c_A 689 EMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFE--------ILYHARPHALSLFIGMST 760 (1321)
T ss_dssp ---------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHH--------HHHHTGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHH--------HHHHHHHHHHHHHHHHHH
T ss_conf 211022111013212456774025777531540389999999970786310999--------999987789999999999
Q ss_pred HHHHH-------HHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHCHHHHHHHHCCCCCCHH
Q ss_conf 99999-------999998734458-87643353004578999999999--969999999851114588853047768133
Q 000523 530 IAFVA-------VVYMTLFLRTKM-HKDTVTDGGIFAGATFFAITMVN--FNGFSEISMTIAKLPVFYKQRDFRFFPPWA 599 (1445)
Q Consensus 530 ~~~~a-------li~gtif~~~~~-~~~~~~~~~~~~g~lf~~i~~~~--~~~~~~l~~~~~~~pvf~kqr~~~~y~~~a 599 (1445)
.++.+ ++.+. ++.... +.........+...+|+.+.... +..............+..+-|..
T Consensus 761 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~------- 832 (1321)
T 4f4c_A 761 ATIGGFIYPTYSVFFTS-FMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNK------- 832 (1321)
T ss_dssp HHHGGGHHHHHHHHHHH-HHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 99999999999999999-9987517934556678999999999999999999999999999999999999999-------
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHCCHHHHHHH-
Q ss_conf 7887999850099999999999998731777846789999999999---------999999999999872102678999-
Q 000523 600 YAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLLG---------VNQMASALFRFIAVTGRNMVVANT- 669 (1445)
Q Consensus 600 y~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~rff~~~l~l~~---------~~~~~~~lf~~ia~~~~~~~vA~~- 669 (1445)
+-..+++.|+.+++. -....|+....+.-... .......++.+++.+.-.......
T Consensus 833 --l~~~il~~~~~ffd~------------~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l 898 (1321)
T 4f4c_A 833 --LFRNVLSQHIGFFDS------------PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM 898 (1321)
T ss_dssp --HHHHHHTSCSSSTTS------------GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred --HHHHHHCCCCHHHCC------------CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHH
T ss_conf --988873499333216------------788848888502505999999999999999998653777702213786899
Q ss_pred -HHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf -9999999999876033----48444567899999781999999999998713896544346886540789872149665
Q 000523 670 -FGSFALLVLLSLGGFI----LSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFA 744 (1445)
Q Consensus 670 -~~~~~~l~~~l~~Gf~----i~~~~ip~~~~W~~~isP~~Y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~ 744 (1445)
+..+++++++.+..++ .........-..... ..+..+++ .|...++.++...
T Consensus 899 ~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~l--------------------~gi~tIra~~~e~ 955 (1321)
T 4f4c_A 899 ALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS---GKIAIEAI--------------------ENVRTVQALARED 955 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH---HHHHHHHH--------------------HTHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------------------HHHHHHHHCCCHH
T ss_conf 999999888999999999999999999999998889---88999999--------------------6279888614148
Q ss_pred C-------------------CHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCC-CCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 5-------------------2147898999999-999999999999882398888-873100011222211224786444
Q 000523 745 H-------------------EYWYWLGLGALFG-FVLLLNFAYTLALTFLDPFEK-PRAVITEEIESNEQDDRIGGNVQL 803 (1445)
Q Consensus 745 ~-------------------~~~~w~~igil~~-~~i~~~~~~~laL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1445)
. ..+.....+.... ..+...+.+.++......... ............ ..........
T Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 1033 (1321)
T 4f4c_A 956 TFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYA--ITISTSTLGF 1033 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHH--HHTTTSSTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--HHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999998757887537654214789999999--9877889999
Q ss_pred CCCCCCCCCCCCCC----CCCHHHHHHHHHCCCCC-CCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECC
Q ss_conf 45789987655655----63101234432027887-88876567872248804112551530235515457854885421
Q 000523 804 STLGGSTDDIRGQQ----SSSQSLSLAEAEASRPK-KKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGV 878 (1445)
Q Consensus 804 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~v 878 (1445)
. ....+... +...........+.... ......+.....+.|+||+++++.. ....+|+|+
T Consensus 1034 --~---~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~i 1098 (1321)
T 4f4c_A 1034 --A---TSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPER----------PEIEILKGL 1098 (1321)
T ss_dssp --G---GGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTS----------CSSCSEEEE
T ss_pred --H---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC----------CCCCCCCCE
T ss_conf --9---9999999999999998999860766577766778788888818999879857999----------988212451
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 6776188189997479998478997570898887378999996911780---0102147786158888999899899999
Q 000523 879 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLF 955 (1445)
Q Consensus 879 s~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f 955 (1445)
|+.++|||++||+|+||||||||+++|.|... +.+|+|.+||.+... ..+++.++||+|+..++. -|++|++.|
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~ 1175 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIY 1175 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSS
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHC
T ss_conf 69988989999989999819999999956863--899789999998654999999854599878997327-239999745
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 8872089999988999999999999299632-------223236988776798899899999998519978899399999
Q 000523 956 SAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1445)
Q Consensus 956 sa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsG 1028 (1445)
.. -|.+.++ +.++++++..++.+. .|+.+|..| ..||||||||++|||+|+++|+||+||||||+
T Consensus 1176 gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSa 1247 (1321)
T 4f4c_A 1176 GL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247 (1321)
T ss_dssp SS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CC---CCCCCCH----HHHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 49---9999999----9999999982984999717678999823889-15699999999999999717998999681115
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999999999988489989999468539999864618699249599997699
Q 000523 1029 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1029 LD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
||+.+...|++++++.. .|+|+|+++|+++. ...+|++++|++ |+++-+|+.
T Consensus 1248 LD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1248 LDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp TTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH
T ss_pred CCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEEC-CEEEEECCH
T ss_conf 78999999999999973-99989996068999--996999999989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=618.96 Aligned_cols=837 Identities=19% Similarity=0.247 Sum_probs=403.4
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC--CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 67657899984321565669999999987752199--9995069992049999982587767872689899999997665
Q 000523 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGI--DLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1445)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1445)
.++.....+|+.++.+..++ ... .+..+. +....+++|+|+++.+..
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~-----~~~-~~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 399 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPS-----IDS-FSKSGHKPDNIQGNLEFKNIHFSYPS------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCC-----CSS-CCSSCCCCTTCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCC-CCCCCCCCCCCCCEEEEEEEEEECCC-------------------------
T ss_conf 99999999999999728986-----776-66567777777771899998997699-------------------------
Q ss_pred HHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEEC
Q ss_conf 415786544246414146784892999985999977999999948989999811299996833798675---63189983
Q 000523 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1445)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~---~~~~~yv~ 232 (1445)
+ ....+|+|+|+.++||+.++|+||+|||||||+++|+|.++|+ +|+|.++|.++.+..+ ++.++||+
T Consensus 400 -----~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~ 470 (1284)
T 3g5u_A 400 -----R-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVS 470 (1284)
T ss_dssp -----T-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred -----C-CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEEC
T ss_conf -----9-9871012545897599889998999997999999980788999---738999999877579999986548986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78887999999999997677117874145659989999871999999978999998633344769999999990995435
Q 000523 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1445)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1445)
|++.++ ..||+||+.|+.. ...++.+.++++.. +. +. .+..|++..
T Consensus 471 Q~~~l~-~~ti~eNi~~g~~----~~~~~~~~~~~~~~---~~------------------------~~--~i~~l~~g~ 516 (1284)
T 3g5u_A 471 QEPVLF-ATTIAENIRYGRE----DVTMDEIEKAVKEA---NA------------------------YD--FIMKLPHQF 516 (1284)
T ss_dssp SSCCCC-SSCHHHHHHHHCS----SCCHHHHHHHHHHT---TC------------------------HH--HHHHSTTGG
T ss_pred CCCCCC-CCCHHHHHHCCCC----CCCHHHHHHHHHHH---CC------------------------HH--HHHHCCCCC
T ss_conf 887537-7669999745798----99999999999982---96------------------------99--997465633
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHC
Q ss_conf 54334644666774345689999997349852422269989998989999999999877039869999806910488305
Q 000523 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1445)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~f 392 (1445)
||.+|+.+. .||||||||++|||+++.+|++++|||||++||+.++..+.+.++... .++|+++ +.|.. ++...+
T Consensus 517 ~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l-~~i~~~ 591 (1284)
T 3g5u_A 517 DTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRL-STVRNA 591 (1284)
T ss_dssp GCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCH-HHHTTC
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCH-HHHHCC
T ss_conf 450147878-659999999999999952999899979877779999999999999973--9998999-94077-899749
Q ss_pred CEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHH-HH---HHCCCCCCCCCCHHHHHHH-HHH
Q ss_conf 819995597399843956799999836997899999567998611802244-54---3103899866799899999-981
Q 000523 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQR-QY---WAHKEKPYRFVTVQEFAEA-FQS 467 (1445)
Q Consensus 393 D~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~-~~---~~~~~~~~~~~~~~e~~~~-f~~ 467 (1445)
|+|++|++|+++++|+++++++- .| ...+....-....+.. .. ................... .+.
T Consensus 592 d~i~vl~~G~i~~~g~~~~l~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1284)
T 3g5u_A 592 DVIAGFDGGVIVEQGNHDELMRE---KG-------IYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRR 661 (1284)
T ss_dssp SEEEECSSSCCCCEECHHHHHHT---TS-------HHHHHHHHTC-----------------------------------
T ss_pred CEEEEEECCEEEEECCHHHHHHC---CC-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98999989999997889999867---87-------799999974300221113333332222234433333333200034
Q ss_pred CHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHH-HHHHHH---HHHHHHHHHHH--
Q ss_conf 5122336875139766--653121223466566728999999999999996115489-999999---99999999999--
Q 000523 468 FHVGQKISDELRTPFD--KSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFV-YIFKLI---QIAFVAVVYMT-- 539 (1445)
Q Consensus 468 s~~~~~~~~~l~~~~~--~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~-~~~r~~---~~~~~ali~gt-- 539 (1445)
... ......+.+ ................+.+..++.. .+ .+..... ..+.++ .....+.+.+.
T Consensus 662 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 732 (1284)
T 3g5u_A 662 RST----RKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLN-ST----EWPYFVVGIFCAIINGGLQPAFSVIFSKVV 732 (1284)
T ss_dssp --------------------------CCCCCSCCCTTHHHHHH-HH----TCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHH-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 543----334456422332110245553136625899999984-51----579999999999999999999999999999
Q ss_pred -HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf -8734458876433530045789999999999--6999999985111458885304776813378879998500999999
Q 000523 540 -LFLRTKMHKDTVTDGGIFAGATFFAITMVNF--NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEV 616 (1445)
Q Consensus 540 -if~~~~~~~~~~~~~~~~~g~lf~~i~~~~~--~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~ 616 (1445)
.+.... ..........+...++..+....+ ..............+..+-|. .+-..+.+.|+.+++.
T Consensus 733 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ff~~ 802 (1284)
T 3g5u_A 733 GVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSWFDD 802 (1284)
T ss_dssp HHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHHHHS
T ss_pred HHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHCC
T ss_conf 9985568-50336779999999999999999999999999999999999999999---------9999998399888757
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH---------HHHHHHH----HHHH--HHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999873177784678999999999999---------9999999----9998--72102678999999999999987
Q 000523 617 AVWVFLSYYVVGYDSNAGRFFKQYALLLGVN---------QMASALF----RFIA--VTGRNMVVANTFGSFALLVLLSL 681 (1445)
Q Consensus 617 ~i~~~i~Y~~~gl~~~~~rff~~~l~l~~~~---------~~~~~lf----~~ia--~~~~~~~vA~~~~~~~~l~~~l~ 681 (1445)
-....|+....+.-..... .....+. .++. .....+.. ..++.++++++
T Consensus 803 ------------~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~l----v~l~~~p~~~~ 866 (1284)
T 3g5u_A 803 ------------PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL----LLLAIVPIIAI 866 (1284)
T ss_dssp ------------CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHH----HHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_conf ------------89988999999999999999999999999999999999999999999699999----99999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCC-------CHHHHHHHH
Q ss_conf 6033484445678999997819999999999987138965443468865407898721496655-------214789899
Q 000523 682 GGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAH-------EYWYWLGLG 754 (1445)
Q Consensus 682 ~Gf~i~~~~ip~~~~W~~~isP~~Y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~-------~~~~w~~ig 754 (1445)
.+++..+ +..-.....--.+....-...|....-.... .........+.+.-..+ ....|.+
T Consensus 867 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~----a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-- 935 (1284)
T 3g5u_A 867 AGVVEMK-----MLSGQALKDKKELEGSGKIATEAIENFRTVV----SLTREQKFETMYAQSLQIPYRNAMKKAHVFG-- 935 (1284)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCTTTT----TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 9999999-----9999999999999999999999998899999----8465999999999999999999999999999--
Q ss_pred HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCEECCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-
Q ss_conf 999999999-99999998823988888731000112---------2221122478644445789987655655631012-
Q 000523 755 ALFGFVLLL-NFAYTLALTFLDPFEKPRAVITEEIE---------SNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSL- 823 (1445)
Q Consensus 755 il~~~~i~~-~~~~~laL~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 823 (1445)
...++.... .+...+.+.+........ ..+.... .......... . ..............
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~a~~ri~ 1005 (1284)
T 3g5u_A 936 ITFSFTQAMMYFSYAAAFRFGAYLVTQQ-LMTFENVLLVFSAIVFGAMAVGQVSS------F---APDYAKATVSASHII 1005 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSSS-CSCSTTHHHHHHHHHHHHHHHHHHTS------S---SCCSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH------H---HHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999909-80699999999999999999999999------9---999999999999999
Q ss_pred HHHHHHCCCC--CCCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHH
Q ss_conf 3443202788--78887656787224880411255153023551545785488542167761881899974799984789
Q 000523 824 SLAEAEASRP--KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 901 (1445)
Q Consensus 824 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTL 901 (1445)
......+... ...+...+.....+.++|+++.++.. ....+|+|+|+.++|||++||+|+||||||||
T Consensus 1006 ~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl 1075 (1284)
T 3g5u_A 1006 RIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTV 1075 (1284)
T ss_dssp HHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHH
T ss_conf 99838876666555665456777857999989977999----------98700203059976998899988999978999
Q ss_pred HHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 97570898887378999996911780---010214778615888899989989999988720899999889999999999
Q 000523 902 MDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVM 978 (1445)
Q Consensus 902 l~~Lagr~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl 978 (1445)
+++|+|... +.+|+|.++|.+... ...++.++||+|+..++ ..||+|++.+.... ...+.++ +++++
T Consensus 1076 ~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~ 1145 (1284)
T 3g5u_A 1076 VQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAA 1145 (1284)
T ss_dssp HHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHH
T ss_pred HHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHHHH
T ss_conf 999946867--89977989999800078999970268987787406-66699997466877---8999999----99999
Q ss_pred HHCCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9929963-------222323698877679889989999999851997889939999999999999999999988489989
Q 000523 979 ELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051 (1445)
Q Consensus 979 ~~l~L~~-------~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tv 1051 (1445)
+..++.+ -.|+.+|..+ ..||||||||++||++|+.+|+||+|||||+|||..+...+++.+++. ..|+|+
T Consensus 1146 ~~~~~~~~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tv 1223 (1284)
T 3g5u_A 1146 KEANIHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTC 1223 (1284)
T ss_dssp HHHTCHHHHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCE
T ss_pred HHHCCHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEE
T ss_conf 983959999727042456117888-933899999999999997499999986875557999999999999986-799989
Q ss_pred EEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 999468539999864618699249599997699
Q 000523 1052 VCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1084 (1445)
Q Consensus 1052 i~tiHqps~~i~~~fD~illL~~gG~~vY~Gp~ 1084 (1445)
|+++|+++. + ..+|++++|.+ |+++..|+.
T Consensus 1224 i~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1224 IVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp EEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred EEEECCHHH-H-HCCCEEEEEEC-CEEEEECCH
T ss_conf 999558799-9-80998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=451.64 Aligned_cols=436 Identities=23% Similarity=0.281 Sum_probs=308.7
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 46414146784892999985999977999999948989999811299---------9968337986-----756318998
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v---------~~nG~~~~~~-----~~~~~~~yv 231 (1445)
.+|+++| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 37888799---999999999767711787414565998999987199999997899999863334476999999999099
Q 000523 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1445)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL 308 (1445)
.|+....+ ..||+|++.... . ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~------~-------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVD------E-------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTC------C-------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHH------H-------------------------------------HHHHHHHHHHCCC
T ss_conf 32043130220050999963167------9-------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 54355433464466677434568999999734985242226998999898999999999987703986999980691048
Q 000523 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1445)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~ 388 (1445)
++..|..++ .|||||||||+||++|+.+|++++|||||++||..+...+.+.|+++.. .+.|+++ +.|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIi-vsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV-VEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6998999-96485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83058199955973998439567999998369978999995679986118022445431038998667998999999815
Q 000523 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1445)
Q Consensus 389 ~~~fD~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s 468 (1445)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12233687513976665312122346656672899999999999999611548999999999999999999873445887
Q 000523 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1445)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~gtif~~~~~~~ 548 (1445)
+. . ++.. . .+.
T Consensus 315 ----------------------------~~--~---------~~~i------------------~------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGI------------------N------EFL------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHH------------------H------HHH------
T ss_pred ----------------------------HH--H---------HHHH------------------H------HHH------
T ss_conf ----------------------------32--7---------9999------------------9------997------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf 64335300457899999999996999999985111458885304776813378879998500999999999999987317
Q 000523 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1445)
Q Consensus 549 ~~~~~~~~~~g~lf~~i~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1445)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 77846789999999999999999999999872102678999999999999987603348444567899999781999999
Q 000523 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1445)
Q Consensus 629 l~~~~~rff~~~l~l~~~~~~~~~lf~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~Y~~ 708 (1445)
.|+..
T Consensus 326 -----------------------------------------------------~~~~~---------------------- 330 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLK---------------------- 330 (607)
T ss_dssp -----------------------------------------------------HTEET----------------------
T ss_pred -----------------------------------------------------HHCCH----------------------
T ss_conf -----------------------------------------------------51013----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
Q ss_conf 99999871389654434688654078987214966552147898999999999999999999882398888873100011
Q 000523 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1445)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~igil~~~~i~~~~~~~laL~~~~~~~~~~~~~~~~~ 788 (1445)
... . .+... ..
T Consensus 331 ------------------~~~--~--------~~~~~------------------------------~~----------- 341 (607)
T 3bk7_A 331 ------------------DEN--V--------RFRPY------------------------------EI----------- 341 (607)
T ss_dssp ------------------TTT--E--------ECCSS------------------------------CC-----------
T ss_pred ------------------HHH--H--------HCCCC------------------------------CC-----------
T ss_conf ------------------455--4--------30121------------------------------23-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCC
Q ss_conf 22221122478644445789987655655631012344320278878887656787224880411255153023551545
Q 000523 789 ESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVL 868 (1445)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 868 (1445)
..... . .. .. ......+.++|+++.+.
T Consensus 342 ---------------------~~~~~------------~--~~-~~------~~~~~~l~~~~l~~~~~----------- 368 (607)
T 3bk7_A 342 ---------------------RFTKL------------S--ER-VD------VERETLVEYPRLVKDYG----------- 368 (607)
T ss_dssp ---------------------CCCCS------------T--TS-CC------CCCCEEEEECCEEEECS-----------
T ss_pred ---------------------CCCCC------------C--CC-CC------CCCCEEEEEECEEEEEC-----------
T ss_conf ---------------------45657------------7--75-44------46752899913098744-----------
Q ss_pred CCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 78548854216776188189997479998478997570898887378999996911780010214778615888899989
Q 000523 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948 (1445)
Q Consensus 869 ~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 948 (1445)
. ..|+++++.+++||+++|+||||||||||+++|+|... +.+|+|.+ .+.++|++|+....+.+|
T Consensus 369 --~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~t 433 (607)
T 3bk7_A 369 --S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGT 433 (607)
T ss_dssp --S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSB
T ss_pred --C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------EEEEEEEECCCCCCCCCC
T ss_conf --3-48993515327998999999999899999999966988--88628999----------027999805766778984
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 98999998872089999988999999999999299632223236988776798899899999998519978899399999
Q 000523 949 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1445)
Q Consensus 949 V~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsG 1028 (1445)
|.|.+........ ...+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 434 v~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 434 VYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501 (607)
T ss_dssp HHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999975312587-------78999999998769933754992-----23799999999999999748998999687447
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999999999999884-8998999946853999986461869924-959999769987
Q 000523 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1086 (1445)
Q Consensus 1029 LD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~-gG~~vY~Gp~g~ 1086 (1445)
||..+...+++.++++++ .|.|||+++|++. .+....|++++|.. .|+.+..|++.+
T Consensus 502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 89999999999999999747989999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=450.22 Aligned_cols=426 Identities=20% Similarity=0.266 Sum_probs=300.2
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCHH
Q ss_conf 464141467848929999859999779999999489899998112999968337986756318998378-8879999999
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQH-DNHIGEMTVR 244 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~lTVr 244 (1445)
.+|+|+|+.+++|+.++|+||||||||||+++|+| |+| +|.+... ....+|++|+ +..++.+||.
T Consensus 449 ~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv~ 514 (986)
T 2iw3_A 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSVL 514 (986)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBHH
T ss_pred EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCHH
T ss_conf 76741269981897899999999879999999948---------986--7976635---416999735643245578099
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCC
Q ss_conf 99997677117874145659989999871999999978999998633344769999999990995-43554334644666
Q 000523 245 ETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIRG 323 (1445)
Q Consensus 245 Etl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~-~~~dt~VG~~~~~g 323 (1445)
|++.+ ...+ . ...++.+++.+||+ +..+..++ .
T Consensus 515 e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~-----~ 548 (986)
T 2iw3_A 515 DFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS-----A 548 (986)
T ss_dssp HHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----G
T ss_pred HHHHH--HHCC--H-------------------------------------HHHHHHHHHHCCCCHHHHCCCCC-----C
T ss_conf 99998--6127--9-------------------------------------99999999986998446439802-----0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEE
Q ss_conf 77434568999999734985242226998999898999999999987703986999980691048830581999559739
Q 000523 324 ISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1445)
Q Consensus 324 lSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL~~G~i 403 (1445)
||||||||+.||++++.+|++++|||||+|||..+..++.+.|++ .+.|+++ +.|...++...+|++++|.+|++
T Consensus 549 LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCEE
T ss_conf 799999999999999649999999797667999999999999986----7998999-97988999986899999979944
Q ss_pred E-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCC
Q ss_conf 9-843956799999836997899999567998611802244543103899866799899999981512233687513976
Q 000523 404 V-YQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSFHVGQKISDELRTPF 482 (1445)
Q Consensus 404 v-y~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s~~~~~~~~~l~~~~ 482 (1445)
+ +.|+.+++.... | ...
T Consensus 624 v~~~G~~~e~~~~~-------~----------------~~~--------------------------------------- 641 (986)
T 2iw3_A 624 RKYKGNFTEFVKKC-------P----------------AAK--------------------------------------- 641 (986)
T ss_dssp EEEESCHHHHHHHC-------G----------------GGG---------------------------------------
T ss_pred ECCCCCHHHHHHHH-------H----------------HHH---------------------------------------
T ss_conf 26779999998614-------8----------------899---------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 66531212234665667289999999999999961154899999999999999999987344588764335300457899
Q 000523 483 DKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHKDTVTDGGIFAGATF 562 (1445)
Q Consensus 483 ~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~gtif~~~~~~~~~~~~~~~~~g~lf 562 (1445)
..+ .+..... .
T Consensus 642 ------------~~~-----------------------------------------------~l~~~~~--~-------- 652 (986)
T 2iw3_A 642 ------------AYE-----------------------------------------------ELSNTDL--E-------- 652 (986)
T ss_dssp ------------GSS-----------------------------------------------STTTCCC--C--------
T ss_pred ------------HHH-----------------------------------------------HHHHHHH--H--------
T ss_conf ------------998-----------------------------------------------6445443--2--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999699999998511145888530477681337887999850099999999999998731777846789999999
Q 000523 563 FAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYAL 642 (1445)
Q Consensus 563 ~~i~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~rff~~~l~ 642 (1445)
T Consensus 653 -------------------------------------------------------------------------------- 652 (986)
T 2iw3_A 653 -------------------------------------------------------------------------------- 652 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999987210267899999999999998760334844456789999978199999999999871389654
Q 000523 643 LLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWK 722 (1445)
Q Consensus 643 l~~~~~~~~~lf~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~Y~~~al~~nef~~~~~~ 722 (1445)
..+.
T Consensus 653 ----------------------------------------------------------------------------~~~p 656 (986)
T 2iw3_A 653 ----------------------------------------------------------------------------FKFP 656 (986)
T ss_dssp ----------------------------------------------------------------------------CCCC
T ss_pred ----------------------------------------------------------------------------CCCC
T ss_conf ----------------------------------------------------------------------------0356
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 43468865407898721496655214789899999999999999999988239888887310001122221122478644
Q 000523 723 KFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEIESNEQDDRIGGNVQ 802 (1445)
Q Consensus 723 ~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~igil~~~~i~~~~~~~laL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1445)
.+ +.
T Consensus 657 --~~--------------~~------------------------------------------------------------ 660 (986)
T 2iw3_A 657 --EP--------------GY------------------------------------------------------------ 660 (986)
T ss_dssp --CC--------------CC------------------------------------------------------------
T ss_pred --CC--------------CC------------------------------------------------------------
T ss_conf --55--------------54------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEE
Q ss_conf 44578998765565563101234432027887888765678722488041125515302355154578548854216776
Q 000523 803 LSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAF 882 (1445)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i 882 (1445)
.. . .... ...-+.++|+++.+.. ..+.+|+|+|+.+
T Consensus 661 -------~~---------------~-----~~~~------~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I 696 (986)
T 2iw3_A 661 -------LE---------------G-----VKTK------QKAIVKVTNMEFQYPG-----------TSKPQITDINFQC 696 (986)
T ss_dssp -------CT---------------T-----CCST------TSEEEEEEEEEECCTT-----------CSSCSEEEEEEEE
T ss_pred -------CC---------------C-----CCCC------CCCEEEEEEEEEEECC-----------CCCEEEECCEEEE
T ss_conf -------33---------------4-----5667------8706999846998189-----------8741343227998
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHH
Q ss_conf 1881899974799984789975708988873789999969117800102147786158888----999899899999887
Q 000523 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH----SPFVTIYESLLFSAW 958 (1445)
Q Consensus 883 ~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~----~~~lTV~E~l~fsa~ 958 (1445)
++|++++|+||||||||||+++|+|... +.+|+|.++|. ..++|++|+..+ ....|++|.+.+.-.
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q 766 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQ 766 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 2897899989999879999999957988--88608998686--------4257631302433210011479999887750
Q ss_pred HC------------CC----------------------------------------------------CCC---------
Q ss_conf 20------------89----------------------------------------------------999---------
Q 000523 959 LR------------LS----------------------------------------------------PEV--------- 965 (1445)
Q Consensus 959 lr------------~~----------------------------------------------------~~~--------- 965 (1445)
.. .. ...
T Consensus 767 ~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~ 846 (986)
T 2iw3_A 767 TGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIP 846 (986)
T ss_dssp TSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEE
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 45025555433210343555442000112320123444455543122200210002554320000012343234432101
Q ss_pred -------------------------CHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf -------------------------98899999999999929963-2-22323698877679889989999999851997
Q 000523 966 -------------------------DSETRKMFIDEVMELVELNP-L-RQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1018 (1445)
Q Consensus 966 -------------------------~~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~ 1018 (1445)
.....+..++++++.++|.+ . .+.. +..||||||||+.||++|+.+|+
T Consensus 847 ~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P~ 921 (986)
T 2iw3_A 847 RGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPH 921 (986)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCC-----CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6777666766554432455543022323479999999997699805444898-----04239999999999999983999
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 88993999999999999999999998848998999946853999986461869924959999769
Q 000523 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGP 1083 (1445)
Q Consensus 1019 il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vY~Gp 1083 (1445)
+|+|||||+|||..+...+++.+++. +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 922 LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 922 LIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp EEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 99997986577999999999999974---997999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=443.00 Aligned_cols=436 Identities=22% Similarity=0.263 Sum_probs=306.7
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 46414146784892999985999977999999948989999811299---------9968337986-----756318998
Q 000523 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1445)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v---------~~nG~~~~~~-----~~~~~~~yv 231 (1445)
.+|+++| .+++|+.++|+||||||||||+++|+|.++|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 37888799---999999999767711787414565998999987199999997899999863334476999999999099
Q 000523 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1445)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL 308 (1445)
.|+....+ ..||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 54355433464466677434568999999734985242226998999898999999999987703986999980691048
Q 000523 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1445)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~vl~lDEptsgLDs~t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~ 388 (1445)
++..|..++ .|||||||||.||++|+.+|++|+|||||++||..+..++.+.|+++.. .+.|+|+ +.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~-vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLV-VEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-5987999-94788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83058199955973998439567999998369978999995679986118022445431038998667998999999815
Q 000523 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1445)
Q Consensus 389 ~~~fD~i~lL~~G~ivy~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~s 468 (1445)
...+|+|++|.+|...| |. ...+
T Consensus 222 ~~~~dri~vl~~~~~~~-~~----------------------------------------~~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVY-GI----------------------------------------FSQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTE-EE----------------------------------------ECCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CC----------------------------------------CCCH----------------
T ss_conf 97688999986863244-02----------------------------------------2553----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12233687513976665312122346656672899999999999999611548999999999999999999873445887
Q 000523 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1445)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~r~~~~~~~ali~gtif~~~~~~~ 548 (1445)
+. . ++.. ..... +
T Consensus 245 ----------------------------~~--~---------~~~~------------------~~~~~-------~--- 257 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNGI------------------NEFLR-------G--- 257 (538)
T ss_dssp ----------------------------EE--H---------HHHH------------------HHHHH-------T---
T ss_pred ----------------------------HH--H---------HHHH------------------HHHHH-------H---
T ss_conf ----------------------------55--8---------9999------------------98764-------0---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
Q ss_conf 64335300457899999999996999999985111458885304776813378879998500999999999999987317
Q 000523 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1445)
Q Consensus 549 ~~~~~~~~~~g~lf~~i~~~~~~~~~~l~~~~~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1445)
T Consensus 258 -------------------------------------------------------------------------------- 257 (538)
T 1yqt_A 258 -------------------------------------------------------------------------------- 257 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 77846789999999999999999999999872102678999999999999987603348444567899999781999999
Q 000523 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1445)
Q Consensus 629 l~~~~~rff~~~l~l~~~~~~~~~lf~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isP~~Y~~ 708 (1445)
+..
T Consensus 258 -------------------------------------------------------~~~---------------------- 260 (538)
T 1yqt_A 258 -------------------------------------------------------YLK---------------------- 260 (538)
T ss_dssp -------------------------------------------------------EET----------------------
T ss_pred -------------------------------------------------------CCC----------------------
T ss_conf -------------------------------------------------------230----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCC
Q ss_conf 99999871389654434688654078987214966552147898999999999999999999882398888873100011
Q 000523 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1445)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~igil~~~~i~~~~~~~laL~~~~~~~~~~~~~~~~~ 788 (1445)
.. ....... ..
T Consensus 261 ------------------~~----------~~~~~~~------------------------------~~----------- 271 (538)
T 1yqt_A 261 ------------------DE----------NVRFRPY------------------------------EI----------- 271 (538)
T ss_dssp ------------------TT----------TEECSSS------------------------------CC-----------
T ss_pred ------------------HH----------HHCCCCC------------------------------CC-----------
T ss_conf ------------------02----------3203444------------------------------55-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCEEEEECCHHHHHCCCC
Q ss_conf 22221122478644445789987655655631012344320278878887656787224880411255153023551545
Q 000523 789 ESNEQDDRIGGNVQLSTLGGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVL 868 (1445)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~ 868 (1445)
....+ . .. . . +.....+..+|+++.+.
T Consensus 272 ---------------------~~~~~--------~---~~-~---~------~~~~~~l~~~~l~~~~~----------- 298 (538)
T 1yqt_A 272 ---------------------KFTKT--------G---ER-V---E------IERETLVTYPRLVKDYG----------- 298 (538)
T ss_dssp ---------------------CCCCS--------S---GG-G---S------SCCCEEEEECCEEEEET-----------
T ss_pred ---------------------CCCCC--------C---CC-C---C------CCCCEEEEEEEEEEEEC-----------
T ss_conf ---------------------54557--------7---65-5---6------67871899930799989-----------
Q ss_pred CCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 78548854216776188189997479998478997570898887378999996911780010214778615888899989
Q 000523 869 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948 (1445)
Q Consensus 869 ~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lT 948 (1445)
. ..|+++++.+++||++||+|+||||||||+++|+|... +.+|+|.+ ...++|++|+....+..|
T Consensus 299 --~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~t 363 (538)
T 1yqt_A 299 --S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGT 363 (538)
T ss_dssp --T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSB
T ss_pred --C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------CCEEEEEECCCCCCCCCC
T ss_conf --9-89990744128998999988999999999999967998--99718998----------746999826776788885
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 98999998872089999988999999999999299632223236988776798899899999998519978899399999
Q 000523 949 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1445)
Q Consensus 949 V~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsG 1028 (1445)
|.|.+......... ..+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 364 v~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 364 VYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAY 431 (538)
T ss_dssp HHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999864036887-------8999999999749915653994-----44899999999999999728998999398010
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999999999999884-8998999946853999986461869924-959999769987
Q 000523 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1086 (1445)
Q Consensus 1029 LD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~-gG~~vY~Gp~g~ 1086 (1445)
||..+...+++.++++++ .|.|||+++|+.. .+...+|++++|.. .|+.+..|++.+
T Consensus 432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 89999999999999999867989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=440.36 Aligned_cols=214 Identities=21% Similarity=0.287 Sum_probs=151.2
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CEEEEEECCCCC
Q ss_conf 2464141467848929999859999779999---------------------999489899998----112999968337
Q 000523 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHDM 219 (1445)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL---------------------~~LaG~~~~~~~----~~G~v~~nG~~~ 219 (1445)
.++|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred CCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHH
T ss_conf 64023438998799899998999999888715101232111000110024455530345677563213564157447201
Q ss_pred CCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98675631899837888-------------------79999999999976771178741456599899998719999999
Q 000523 220 DEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280 (1445)
Q Consensus 220 ~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d 280 (1445)
... +++.++||+|... .++.+||+|++.+........ . ......
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~-------~~~~~~-------- 173 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-K-------EAQIAR-------- 173 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred HCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCH-H-------HHHHHH--------
T ss_conf 025-50000465112566777775311112344433345785999999752036431-4-------567788--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCHH
Q ss_conf 7899999863334476999999999099543-55433464466677434568999999734985--24222699899989
Q 000523 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSS 357 (1445)
Q Consensus 281 ~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~-~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~--vl~lDEptsgLDs~ 357 (1445)
.. ..+.... -.+++.+||++. .|..++ .|||||||||.||++|+.+|+ +++|||||+|||+.
T Consensus 174 --~~-------~~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 174 --LI-------LREIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred --HH-------HHHHHHH-HHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf --88-------9999999-9899975984344149700-----1899999999999999628998789997985689999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 89999999999877039869999806910488305819995------597399843956799
Q 000523 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1445)
Q Consensus 358 t~~~i~~~L~~~~~~~~~t~iisl~Q~~~~~~~~fD~i~lL------~~G~ivy~G~~~~~~ 413 (1445)
+..++.+.|+++.. .+.|+|+ ++|.... ...+|++++| .+|++++.|+.+++.
T Consensus 239 ~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 99999999999997-4998999-9578799-9629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=431.27 Aligned_cols=216 Identities=20% Similarity=0.243 Sum_probs=167.7
Q ss_pred EEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 24880411255153023551545785488542167761881899974799984789975708988873789999969117
Q 000523 846 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 925 (1445)
Q Consensus 846 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~ 925 (1445)
.+.+++++..+. . ..|+.+++.+++||+++|+||||||||||+++|+|... +.+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECC---
T ss_conf 699823399979-------------8-89982664688998999999999989999999957888--9981899998---
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80010214778615888899989989999988720899999889999999999992996322232369887767988998
Q 000523 926 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1005 (1445)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1445)
+.++|++|+.......||+|++.+...... .. ....++++++.++|.+..+..+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------EEEEEECHHCCCCCCCCHHHHHHHHHHHCC--CH----HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf ------456761400034547779999987553112--11----6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECC
Q ss_conf 99999998519978899399999999999999999999884-8998999946853999986461869924-959999769
Q 000523 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGP 1083 (1445)
Q Consensus 1006 Rlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~tiHqps~~i~~~fD~illL~~-gG~~vY~Gp 1083 (1445)
|+.||++|+.+|++|+|||||+|||..+...+++.++++++ .|.|||+++|+.. .+...+|++++|.. .|.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 987501689998719
Q 000523 1084 LGRHSCHLISYFEAI 1098 (1445)
Q Consensus 1084 ~g~~~~~~~~yF~~~ 1098 (1445)
+..-...+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=424.82 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=156.0
Q ss_pred EEEECCEEEEECC-----CEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 8854216776188-----18999747999847899757089888737899999691178001021477861588889998
Q 000523 873 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 947 (1445)
Q Consensus 873 ~iL~~vs~~i~pG-----e~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~l 947 (1445)
..++++++.+++| |+++|+||||||||||+++|+|...+ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99899999887208999998899999999999929963222323698877679889989999999851997889939999
Q 000523 948 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1445)
Q Consensus 948 TV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTs 1027 (1445)
||+|.+... .+. .... ...++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~~---~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFLN---PQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTTS---HHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCCC---HHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--3246---899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999988-48998999946853999986461869924-959999769987501689998719
Q 000523 1028 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGRHSCHLISYFEAI 1098 (1445)
Q Consensus 1028 GLD~~~a~~i~~~l~~~~-~~g~tvi~tiHqps~~i~~~fD~illL~~-gG~~vY~Gp~g~~~~~~~~yF~~~ 1098 (1445)
|||..+...+++.++++. +.|.|||+++|+.. .+....|++++|.. .|+.+..|++.+--.....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=369.97 Aligned_cols=214 Identities=28% Similarity=0.395 Sum_probs=179.3
Q ss_pred CCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 72248804112551530235515457854885421677618818999747999847899757089888737899999691
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~ 923 (1445)
...++|+|++++++.. ++..+|+|+|+.++||+++||+||||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 1780---0102147786158888999899899999887208999998899999999999929963-------22232369
Q 000523 924 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 993 (1445)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~ 993 (1445)
+... ..+++.++||+|+..++ +-|++|++.|.. ++.+.+ .++++++..++.+ -.|+.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----CCCHHH----HHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415-----522099----9999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 88776798899899999998519978899399999999999999999999884899899994685399998646186992
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~ 1073 (1445)
.| ..||||||||++|||+++++|+|++||||||+||+.+...+++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 98-8777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 49599997699
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~vY~Gp~ 1084 (1445)
+ |+++-.|+.
T Consensus 627 ~-G~ive~Gth 636 (1321)
T 4f4c_A 627 N-GQVVEVGDH 636 (1321)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEECCCCH
T ss_conf 9-965136899
No 10
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=337.33 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=173.7
Q ss_pred CCEEEEECCEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 72248804112551530235515457854885421677618818999747999847899757089888737899999691
Q 000523 844 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 923 (1445)
Q Consensus 844 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pGe~~al~G~sGaGKTTLl~~Lagr~~~~~~~G~i~i~G~ 923 (1445)
+..++++|++++++. ++..+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEECCC-----------CCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE
T ss_conf 880799999997589-----------99741343379987999999989999859999999846788--99967999999
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCC-------CCCCCC
Q ss_conf 1780---010214778615888899989989999988720899999889999999999992996322-------232369
Q 000523 924 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLR-------QSLVGL 993 (1445)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~fsa~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~-------~~~vg~ 993 (1445)
+... ..+++.++||+|+..+++. ||+|++.+.. ++.+. +.++++++..++.+.. ++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EHHHCCHHHHHHHEEEEECCCCCCCC-CHHHHHHCCC-----CCCCH----HHHHHHHHHHCCHHHHHHCCCHHHHHHCC
T ss_conf 84427899996006899289834764-5999985279-----99889----99999998809599997573301025306
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 88776798899899999998519978899399999999999999999999884899899994685399998646186992
Q 000523 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1445)
Q Consensus 994 ~~~~glSgGqrkRlsia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~tiHqps~~i~~~fD~illL~ 1073 (1445)
. ...||||||||++||++|+.+|++++||||||+||+.++..+++.++++. .++|+|+++|+++. ...+|++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEE
T ss_conf 8-89679999999999999974999999978654579999999999999980-89979998317899--97199899998
Q ss_pred CCCEEEEECCC
Q ss_conf 49599997699
Q 000523 1074 RGGQEIYVGPL 1084 (1445)
Q Consensus 1074 ~gG~~vY~Gp~ 1084 (1445)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
T ss_conf 9-989998889
Done!