Query 000524
Match_columns 1444
No_of_seqs 497 out of 5289
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:28:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000524.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_295-299//hhsearch_pdb/000524hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 672.2 50.5 768 163-1084 429-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 604.1 58.7 793 164-1084 402-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 454.8 34.3 436 166-1086 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 449.2 41.8 427 165-1083 448-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 446.1 31.8 436 166-1086 36-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 444.5 35.3 215 164-413 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 435.3 31.4 216 846-1098 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 424.5 32.4 201 873-1098 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 334.0 19.4 214 844-1084 413-636 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 334.0 35.3 197 873-1084 598-897 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=672.19 Aligned_cols=768 Identities=20% Similarity=0.267 Sum_probs=393.8
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCC---CEEEEECCCCCCCC
Q ss_conf 541375210568848849999769999689999998469999998011999978418998755---21899747888789
Q 000524 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIG 239 (1444)
Q Consensus 163 ~~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~---r~~aYv~Q~D~~~~ 239 (1444)
+..++|+|+|+.++||++++|+||+|||||||+++|.|.+++. +|+|.+||+++++...+ +.++||+|++ ++.
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~-~Lf 504 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEP-ALF 504 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCC
T ss_pred CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCC-EEE
T ss_conf 9874333318862288278998058985778888754565164---486157996501125999850466658753-320
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999986561178833567689889866409999999789999987322335579999999919943234434475
Q 000524 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1444)
Q Consensus 240 ~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~ 319 (1444)
+.|||||+.|+.. +.+.+...+|+...+-+ |. +-.|+++.||.||+.
T Consensus 505 ~~TI~eNI~~g~~-------------------------~~~~~~v~~a~~~a~l~-----~~---i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 505 NCTIEENISLGKE-------------------------GITREEMVAACKMANAE-----KF---IKTLPNGYNTLVGDR 551 (1321)
T ss_dssp SEEHHHHHHTTCT-------------------------TCCHHHHHHHHHHTTCH-----HH---HHHSTTTTSSEESSS
T ss_pred CCCHHHHHHHHCC-------------------------CCHHHHHHHHHHHCCCH-----HH---HHCCCCCCCCEECCC
T ss_conf 7861678864155-------------------------22099999999875654-----68---870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEEC
Q ss_conf 56556644545799999972498535133599899989899999999998770499799998359004883127599972
Q 000524 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1444)
Q Consensus 320 ~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~ 399 (1444)
+. .||||||||++|||+++.+|++++||||||+||+.+...|.++|+++. .++|+|+.-|+. ++...+|+|++|+
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrl--s~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRL--STIRNADLIISCK 626 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCT--TTTTTCSEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCH--HHHHHCCEEEEEE
T ss_conf 88-777778799999998725999899845544688789999999999984--798899973638--7898689899963
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHH--HCCCCHHHHH--HCCC---------CCCCCC--CCHHHHHHH
Q ss_conf 982999618555999998459879999994679975--1580001121--0026---------998766--899899999
Q 000524 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY--WTHK---------EKPYRF--VTVEEFAEA 464 (1444)
Q Consensus 400 ~G~ivy~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~--v~s~~~~~~~--~~~~---------~~p~~~--~~~~e~~~~ 464 (1444)
+|+++.+|+++++++- ++. -++.... .....+.... .... ...... ...++....
T Consensus 627 ~G~ive~Gth~eL~~~-------~g~---y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQ-------QGL---YYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNR 696 (1321)
T ss_dssp TTEEEEEECHHHHHTT-------TCH---HHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCEEECCCCHHHHHHH-------HHH---HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9965136899999985-------327---999999622122223323344332232111222223422222221102211
Q ss_pred HHHCCCHHH----HHHHHCCCCCCCCCC--CC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----
Q ss_conf 980700010----577513866675322--11-2236655774689999999999999631716789999999999----
Q 000524 465 FQSFHVGQK----ISDELRTPFDKSKSH--RA-ALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSV---- 533 (1444)
Q Consensus 465 ~~~~~~~~~----~~~~l~~~~~~~~~~--~~-~~~~~~y~~s~~~~~~~~~~R~~ll~~R~~~~~~~~~~~~~~~---- 533 (1444)
.+....... ..++......+.... .. .........+.+.. +...+.....+........+.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~i~~~~~ 768 (1321)
T 4f4c_A 697 VRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEI--------LYHARPHALSLFIGMSTATIGGFIY 768 (1321)
T ss_dssp -------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHH--------HHHTGGGHHHHHHHHHHHHHGGGHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10132124567740257775315403899999999707863109999--------9998778999999999999999999
Q ss_pred ---HHHHHHHHHCCC-CCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------CCHHHHH--HHCCCCCCH
Q ss_conf ---999987641124-68876555212778999999999--9999999998720--------0036776--101886580
Q 000524 534 ---ALAFMTLFLRTK-MHKHSLTDGGIYAGALFFATAMV--MFNGLAEISMTIA--------KLPVFYK--QRDFRFFPP 597 (1444)
Q Consensus 534 ---ali~gtif~~~~-~~~~~~~~~~~~~g~lf~~l~~~--~f~~~~~~~~~~~--------~~~vf~k--qr~~~fy~~ 597 (1444)
+++++. ++... .+.........+++.+|..+... .+..+........ +..+|.+ .....|+..
T Consensus 769 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~ 847 (1321)
T 4f4c_A 769 PTYSVFFTS-FMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDS 847 (1321)
T ss_dssp HHHHHHHHH-HHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTS
T ss_pred HHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 999999999-9987517934556678999999999999999999999999999999999999999988873499333216
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 23699999998439999999887543220456787769999999999999999999999998201168898999999999
Q 000524 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLV 677 (1444)
Q Consensus 598 ~ay~la~~i~~iP~~~~~~~i~~~i~Y~~ig~~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~l~ 677 (1444)
.-...+..+.++--..-.. +......+..++..+ ...++.++....-+...+.. .+.+++
T Consensus 848 ~~~~~G~i~~r~s~D~~~i-------------~~~l~~~l~~~~~~~-----~~~i~~~~~~~~~~~~l~lv--~l~~~~ 907 (1321)
T 4f4c_A 848 PQNASGKISTRLATDVPNL-------------RTAIDFRFSTVITTL-----VSMVAGIGLAFFYGWQMALL--IIAILP 907 (1321)
T ss_dssp GGGCHHHHHHHHHTHHHHH-------------HTTTSHHHHHHHHHH-----HHHHHHHHHHHHHCHHHHHH--HHHHHH
T ss_pred CCCCHHHHHHCCHHHHHHH-------------HHHHHHHHHHHHHHH-----HHHHHHEEEEHHHHHHHHHH--HHHHHH
T ss_conf 7888488885025059999-------------999999999999986-----53777702213786899999--999888
Q ss_pred HHHHHCCCC----CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCC--------
Q ss_conf 998840423----75551246899987749999999999986238854434788754305787720586643--------
Q 000524 678 LFALGGFVL----SREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAH-------- 745 (1444)
Q Consensus 678 ~~l~~Gf~i----~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~-------- 745 (1444)
++.+..++. ........-.... ...+..+++. |...++.++....
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~l~--------------------gi~tIra~~~e~~~~~~~~~~ 964 (1321)
T 4f4c_A 908 IVAFGQYLRGRRFTGKNVKSASEFAD---SGKIAIEAIE--------------------NVRTVQALAREDTFYENFCEK 964 (1321)
T ss_dssp HHHHHHHHHTSCCSSCSTTTSSHHHH---HHHHHHHHHH--------------------THHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--------------------HHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999999999999999999888---9889999996--------------------279888614148899999999
Q ss_pred -----------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCC-------------------CCCC-CCCCC---CCCC
Q ss_conf -----------1479998999--999999999999999997201-------------------4788-53122---3321
Q 000524 746 -----------AYWYWLGLGA--LFGFILLFNLGFTMAITFLNQ-------------------LEKP-RAVIT---EESE 789 (1444)
Q Consensus 746 -----------~~~~w~~~g~--Lig~~i~f~~~~~l~L~~~~~-------------------~~~~-~~~~~---~~~~ 789 (1444)
..+.....+. .+.+ +...+.+.++...... .... ..... .-..
T Consensus 965 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1043 (1321)
T 4f4c_A 965 LDIPHKEAIKEAFIQGLSYGCASSVLY-LLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAK 1043 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999-9999999875788753765421478999999998778899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCC
Q ss_conf 11111112233223457898876667788851012210159998766866678883248831165661440232105447
Q 000524 790 SNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLE 869 (1444)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~~~~~~ 869 (1444)
.........+. .+...+.+...... ..+.....++|+|++++|+..
T Consensus 1044 ~~~a~~ri~~~-----------------------l~~~~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~~~---------- 1089 (1321)
T 4f4c_A 1044 ATFAGGIIFGM-----------------------LRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPER---------- 1089 (1321)
T ss_dssp HHHHHHHHHHH-----------------------HHCCCSSCTTCCCS-BCCCCCCCEEEEEEEECCTTS----------
T ss_pred HHHHHHHHHHH-----------------------HHCCCCCCCCCCCC-CCCCCCCEEEEEEEEEECCCC----------
T ss_conf 99999989998-----------------------60766577766778-788888818999879857999----------
Q ss_pred CCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEEECCCCCCCC
Q ss_conf 8548845017877289199996579995578996451897896379999995902781---1223258997048988998
Q 000524 870 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 946 (1444)
Q Consensus 870 ~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~ 946 (1444)
+..++|+|||+.++|||.+||+|+||||||||+++|.|... +.+|+|.+||.+.++ ..+++.++||+|++.++.
T Consensus 1090 ~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~- 1166 (1321)
T 4f4c_A 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD- 1166 (1321)
T ss_dssp CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-
T ss_pred CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-
T ss_conf 98821245169988989999989999819999999956863--899789999998654999999854599878997327-
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 7587999998771199999988999999999999399411-------101126998876799888899999999519977
Q 000524 947 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1019 (1444)
Q Consensus 947 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~i 1019 (1444)
-|+|||+.|+. .|.+.+. +.++++++..++.+. .|+.||..| ..||||||||++|||+|+++|+|
T Consensus 1167 gTIreNI~~gl---d~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1167 CSIAENIIYGL---DPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp EEHHHHHSSSS---CTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCHHHHHHCCC---CCCCCCH----HHHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 23999974549---9999999----9999999982984999717678999823889-15699999999999999717998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 89949999999999999999999998489889999548877899730658799259499998489
Q 000524 1020 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1020 l~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~~ 1084 (1444)
|+||||||+||+.+...|++.+++.. .|+|+|+++|+.+ ....+|++++|++ |+++.+|+.
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEECH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEEC-CEEEEECCH
T ss_conf 99968111578999999999999973-9998999606899--9996999999989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=604.14 Aligned_cols=793 Identities=19% Similarity=0.228 Sum_probs=377.9
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4137521056884884999976999968999999846999999801199997841899875---5218997478887899
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1444)
Q Consensus 164 ~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~---~r~~aYv~Q~D~~~~~ 240 (1444)
..++|+|+|+.++||+.++|+||+|||||||+++|+|.++|. +|+|.++|+++.+..+ ++.++||+|+..+++
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~- 477 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA- 477 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCC-
T ss_conf 871012545897599889998999997999999980788999---7389999998775799999865489868875377-
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999865611788335676898898664099999997899999873223355799999999199432344344755
Q 000524 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1444)
Q Consensus 241 lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1444)
.||+||+.|+..- ...+ ...+++...+. .|. +..|++..||.||+.+
T Consensus 478 ~ti~eNi~~g~~~----~~~~---------------------~~~~~~~~~~~-----~~~---i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 478 TTIAENIRYGRED----VTMD---------------------EIEKAVKEANA-----YDF---IMKLPHQFDTLVGERG 524 (1284)
T ss_dssp SCHHHHHHHHCSS----CCHH---------------------HHHHHHHHTTC-----HHH---HHHSTTGGGCCCSSSS
T ss_pred CCHHHHHHCCCCC----CCHH---------------------HHHHHHHHHCC-----HHH---HHHCCCCCCCCCCCCC
T ss_conf 6699997457989----9999---------------------99999998296-----999---9746563345014787
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 65566445457999999724985351335998999898999999999987704997999983590048831275999729
Q 000524 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1444)
Q Consensus 321 ~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~ 400 (1444)
. .||||||||++|||+++.+|++++|||||++||+.+...|.+.++... .++|+|+ +.|....+ ..+|+|++|++
T Consensus 525 ~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~i-~~~d~i~vl~~ 599 (1284)
T 3g5u_A 525 A-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRLSTV-RNADVIAGFDG 599 (1284)
T ss_dssp C-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCHHHH-TTCSEEEECSS
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHHHH-HCCCEEEEEEC
T ss_conf 8-659999999999999952999899979877779999999999999973--9998999-94077899-74998999989
Q ss_pred CEEEEECCHHHHHH----HHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 82999618555999----99845987999999467997515800011210026998766899899999980700010577
Q 000524 401 GQIVYQGPRELVLE----FFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISD 476 (1444)
Q Consensus 401 G~ivy~Gp~~~~~~----~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~~~~~~~~~~ 476 (1444)
|+++++|+++++++ |++-.--...... .+...+.....+... ....+ .......... .... ..
T Consensus 600 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~---~~~~----~~ 666 (1284)
T 3g5u_A 600 GVIVEQGNHDELMREKGIYFKLVMTQTAGNE--IELGNEACKSKDEID---NLDMS-SKDSGSSLIR---RRST----RK 666 (1284)
T ss_dssp SCCCCEECHHHHHHTTSHHHHHHHHTC-----------------------------------------------------
T ss_pred CEEEEECCHHHHHHCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCC---CCCCC-CCCCCCCCCC---CCCC----CC
T ss_conf 9999978899998678779999997430022--111333333222223---44333-3333320003---4543----33
Q ss_pred HHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHH---HHCC
Q ss_conf 5138666--7532211223665577468999999999999963171678999999999-------99999876---4112
Q 000524 477 ELRTPFD--KSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISS-------VALAFMTL---FLRT 544 (1444)
Q Consensus 477 ~l~~~~~--~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~ll~~R~~~~~~~~~~~~~~-------~ali~gti---f~~~ 544 (1444)
....+.+ ................+.+..++. .++.+..+...++..++ .+.+++.+ +...
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 738 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKL--------NSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 445642233211024555313662589999998--------451579999999999999999999999999999998556
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46887655521277899999999999--9999999872000367761018865802369999999843999999988754
Q 000524 545 KMHKHSLTDGGIYAGALFFATAMVMF--NGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFL 622 (1444)
Q Consensus 545 ~~~~~~~~~~~~~~g~lf~~l~~~~f--~~~~~~~~~~~~~~vf~kqr~~~fy~~~ay~la~~i~~iP~~~~~~~i~~~i 622 (1444)
. ..........+...++..+....+ ..+...........+..+-|. .+-..+.+.|+.+++..
T Consensus 739 ~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ff~~~----- 803 (1284)
T 3g5u_A 739 G-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSWFDDP----- 803 (1284)
T ss_dssp C-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHHHHSC-----
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHCCC-----
T ss_conf 8-50336779999999999999999999999999999999999999999---------99999983998887578-----
Q ss_pred HHHCCCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 32204567877699999--------------9999999999999999999820116889899999999999884042375
Q 000524 623 TYYVIGCDPNAGRFFKQ--------------YLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSR 688 (1444)
Q Consensus 623 ~Y~~ig~~~~~~~ff~~--------------~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~ 688 (1444)
....++.... .+..++... ......++.++.-++..+.. .+..++++++.+++..
T Consensus 804 -------~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~-~~~~~~~i~~~~~~~~l~lv--~l~~~p~~~~~~~~~~- 872 (1284)
T 3g5u_A 804 -------KNTTGALTTRLANDAAQVKGATGSRLAVIFQNI-ANLGTGIIISLIYGWQLTLL--LLAIVPIIAIAGVVEM- 872 (1284)
T ss_dssp -------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSCSSSHHH--HHHHHHHHHHHHHHHH-
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-
T ss_conf -------998899999999999999999999999999999-99999999999996999999--9999999999999999-
Q ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCC-------CHHHHHHHHHHHHHHHH
Q ss_conf 55124689998774999999999998623885443478875430578772058664-------31479998999999999
Q 000524 689 EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFA-------HAYWYWLGLGALFGFIL 761 (1444)
Q Consensus 689 ~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~-------~~~~~w~~~g~Lig~~i 761 (1444)
.+......-.--.+...+-...|..........-+ ......+.+.-.. .....|.+ ...++..
T Consensus 873 ----~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 942 (1284)
T 3g5u_A 873 ----KMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT----REQKFETMYAQSLQIPYRNAMKKAHVFG--ITFSFTQ 942 (1284)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_conf ----99999999999999999999999998899999846----5999999999999999999999999999--9999999
Q ss_pred HHH-HHHHHHHHHHCCCCCCCCCCCCCCCCC--C---CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf 999-999999997201478853122332111--1---11-1122332234578988766677888510122101599987
Q 000524 762 LFN-LGFTMAITFLNQLEKPRAVITEESESN--K---QD-NRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPK 834 (1444)
Q Consensus 762 ~f~-~~~~l~L~~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1444)
... +...+.+.+....-... ..+...... . .. .....................+ .....+...+.....
T Consensus 943 ~~~~~~~~~~~~~g~~lv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r---i~~~l~~~~~~~~~~ 1018 (1284)
T 3g5u_A 943 AMMYFSYAAAFRFGAYLVTQQ-LMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH---IIRIIEKTPEIDSYS 1018 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCCSSS-CSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH---HHHHHHSCCSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCC
T ss_conf 999999999999999999909-8069999999999999999999999999999999999999---999983887666655
Q ss_pred CCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEE
Q ss_conf 66866678883248831165661440232105447854884501787728919999657999557899645189789637
Q 000524 835 KRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI 914 (1444)
Q Consensus 835 ~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~ 914 (1444)
..+...+.....++++|+++.++..+ ...+|+|+|+.++|||++||+|+||||||||+++|+|... +.
T Consensus 1019 ~~~~~~~~~~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~ 1086 (1284)
T 3g5u_A 1019 TQGLKPNMLEGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PM 1086 (1284)
T ss_dssp SSCCCTTTTSCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CS
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCC----------CCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CC
T ss_conf 56654567778579999899779999----------8700203059976998899988999978999999946867--89
Q ss_pred EEEEEECCCCCCC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC------
Q ss_conf 9999995902781---1223258997048988998758799999877119999998899999999999939941------
Q 000524 915 TGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP------ 985 (1444)
Q Consensus 915 ~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~------ 985 (1444)
+|+|.++|.+.+. ...++.++||+|+..++ ..||+|++.++... ...+.+ .+++.++..++.+
T Consensus 1087 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~ 1158 (1284)
T 3g5u_A 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLP 1158 (1284)
T ss_dssp EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTT
T ss_pred CCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHH----HHHHHHHHHCCHHHHHHCC
T ss_conf 977989999800078999970268987787406-66699997466877---899999----9999999839599997270
Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf -1101126998876799888899999999519977899499999999999999999999984898899995488778997
Q 000524 986 -LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFD 1064 (1444)
Q Consensus 986 -~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~ 1064 (1444)
-.|+.+|..+ ..||||||||++||++|+.+|+||+|||||+|||..+...|++.+++. ..|+|+|+++|+++. + .
T Consensus 1159 ~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~ 1234 (1284)
T 3g5u_A 1159 DKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-Q 1234 (1284)
T ss_dssp TGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-G
T ss_pred CCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-H
T ss_conf 42456117888-933899999999999997499999986875557999999999999986-799989999558799-9-8
Q ss_pred HCCEEEEEECCCEEEEECCC
Q ss_conf 30658799259499998489
Q 000524 1065 AFDELFLMKRGGQEIYVGPL 1084 (1444)
Q Consensus 1065 ~fD~i~ll~~gG~~vy~G~~ 1084 (1444)
.+|++++|.+ |+++..|+.
T Consensus 1235 ~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1235 NADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp SCSEEEEEET-BEEEEEECH
T ss_pred CCCEEEEEEC-CEEEEECCH
T ss_conf 0998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=454.79 Aligned_cols=436 Identities=23% Similarity=0.283 Sum_probs=309.9
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 37521056884884999976999968999999846999999801199---------9978418998-----755218997
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV---------TYNGHDMGEF-----VPERTAAYI 231 (1444)
Q Consensus 166 ~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~r~~aYv 231 (1444)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47888789---999999999865611788335676898898664099999997899999873223355799999999199
Q 000524 232 SQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1444)
Q Consensus 232 ~Q~D~~~~---~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL 308 (1444)
.|.-...+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 43234434475565566445457999999724985351335998999898999999999987704997999983590048
Q 000524 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1444)
Q Consensus 309 ~~~~dT~VG~~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~ 388 (1444)
++-.|..++ .|||||||||+||++|+.+|++|+|||||+|||..++.++++.|+++.+ .+.|+|+ +.|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIi-vsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV-VEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6998999-96485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83127599972982999618555999998459879999994679975158000112100269987668998999999807
Q 000524 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSF 468 (1444)
Q Consensus 389 ~~lFD~IilL~~G~ivy~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~~ 468 (1444)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00010577513866675322112236655774689999999999999631716789999999999999987641124688
Q 000524 469 HVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHK 548 (1444)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~ll~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1444)
+. .+.... .+.
T Consensus 315 ----------------------------~~-----------~~~~i~------------------------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG-----------TRNGIN------------------------EFL------ 325 (607)
T ss_dssp ----------------------------EE-----------HHHHHH------------------------HHH------
T ss_pred ----------------------------HH-----------HHHHHH------------------------HHH------
T ss_conf ----------------------------32-----------799999------------------------997------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76555212778999999999999999999872000367761018865802369999999843999999988754322045
Q 000524 549 HSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1444)
Q Consensus 549 ~~~~~~~~~~g~lf~~l~~~~f~~~~~~~~~~~~~~vf~kqr~~~fy~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~ig 628 (1444)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 67877699999999999999999999999982011688989999999999988404237555124689998774999999
Q 000524 629 CDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQ 708 (1444)
Q Consensus 629 ~~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 708 (1444)
.|+. +..+.
T Consensus 326 -----------------------------------------------------~~~~-~~~~~----------------- 334 (607)
T 3bk7_A 326 -----------------------------------------------------QGYL-KDENV----------------- 334 (607)
T ss_dssp -----------------------------------------------------HTEE-TTTTE-----------------
T ss_pred -----------------------------------------------------HHCC-HHHHH-----------------
T ss_conf -----------------------------------------------------5101-34554-----------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999862388544347887543057877205866431479998999999999999999999997201478853122332
Q 000524 709 NAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEES 788 (1444)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~Lig~~i~f~~~~~l~L~~~~~~~~~~~~~~~~~ 788 (1444)
+. +. ...
T Consensus 335 -----------~~------------------~~-------------------------------------~~~------- 341 (607)
T 3bk7_A 335 -----------RF------------------RP-------------------------------------YEI------- 341 (607)
T ss_dssp -----------EC------------------CS-------------------------------------SCC-------
T ss_pred -----------HC------------------CC-------------------------------------CCC-------
T ss_conf -----------30------------------12-------------------------------------123-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCC
Q ss_conf 11111111223322345789887666778885101221015999876686667888324883116566144023210544
Q 000524 789 ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVL 868 (1444)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~~~~~ 868 (1444)
. .. . . ... .. +.....+.++|+++.+.
T Consensus 342 -~-------~~-------------~------~------~~~---~~------~~~~~~l~~~~l~~~~~----------- 368 (607)
T 3bk7_A 342 -R-------FT-------------K------L------SER---VD------VERETLVEYPRLVKDYG----------- 368 (607)
T ss_dssp -C-------CC-------------C------S------TTS---CC------CCCCEEEEECCEEEECS-----------
T ss_pred -C-------CC-------------C------C------CCC---CC------CCCCEEEEEECEEEEEC-----------
T ss_conf -4-------56-------------5------7------775---44------46752899913098744-----------
Q ss_pred CCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 78548845017877289199996579995578996451897896379999995902781122325899704898899875
Q 000524 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948 (1444)
Q Consensus 869 ~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 948 (1444)
. ..|+++++.+++||++||+||||||||||+++|+|.... .+|+|.+ .+.++|++|+....+.+|
T Consensus 369 --~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~t 433 (607)
T 3bk7_A 369 --S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGT 433 (607)
T ss_dssp --S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSB
T ss_pred --C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCC
T ss_conf --3-489935153279989999999998999999999669888--8628999----------027999805766778984
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 87999998771199999988999999999999399411101126998876799888899999999519977899499999
Q 000524 949 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1444)
Q Consensus 949 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1028 (1444)
|.|.+........ ...+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 434 v~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 434 VYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501 (607)
T ss_dssp HHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999975312587-------78999999998769933754992-----23799999999999999748998999687447
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999999999999984-8988999954887789973065879925-949999848986
Q 000524 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGR 1086 (1444)
Q Consensus 1029 LD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~-gG~~vy~G~~g~ 1086 (1444)
||..++..+++.++++++ .|.|||+++|+.. .+...+|++++|.. .|+.+..|++.+
T Consensus 502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 89999999999999999747989999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=449.19 Aligned_cols=427 Identities=21% Similarity=0.291 Sum_probs=302.4
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 1375210568848849999769999689999998469999998011999978418998755218997478-887899999
Q 000524 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH-DNHIGEMTV 243 (1444)
Q Consensus 165 ~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I~~nG~~~~~~~~~r~~aYv~Q~-D~~~~~lTV 243 (1444)
..+|+|+|+.+++|+.++|+|||||||||||++|+| |+| +|.+... +...+|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 999998656117883356768988986640999999978999998732233557999999991994-3234434475565
Q 000524 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIR 322 (1444)
Q Consensus 244 rEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL~-~~~dT~VG~~~~r 322 (1444)
.|++.+ ...+ . + ..++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~----------~---------------------------~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T----------K---------------------------EAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C----------H---------------------------HHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--HHCC--H----------H---------------------------HHHHHHHHHCCCCHHHHCCCCC-----
T ss_conf 999998--6127--9----------9---------------------------9999999986998446439802-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCE
Q ss_conf 56644545799999972498535133599899989899999999998770499799998359004883127599972982
Q 000524 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1444)
Q Consensus 323 gLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL~~G~ 402 (1444)
.||||||||+.||++++.+|++|+|||||+|||..+..++.+.|++ .+.|+|+ +.|...++..++|+|++|.+|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCE
T ss_conf 0799999999999999649999999797667999999999999986----7998999-9798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 99-96185559999984598799999946799751580001121002699876689989999998070001057751386
Q 000524 403 IV-YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTP 481 (1444)
Q Consensus 403 iv-y~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~l~~~ 481 (1444)
++ |.|+.+++.... | ....
T Consensus 623 iv~~~G~~~e~~~~~-------~----------------~~~~------------------------------------- 642 (986)
T 2iw3_A 623 LRKYKGNFTEFVKKC-------P----------------AAKA------------------------------------- 642 (986)
T ss_dssp EEEEESCHHHHHHHC-------G----------------GGGG-------------------------------------
T ss_pred EECCCCCHHHHHHHH-------H----------------HHHH-------------------------------------
T ss_conf 426779999998614-------8----------------8999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 66753221122366557746899999999999996317167899999999999999876411246887655521277899
Q 000524 482 FDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGAL 561 (1444)
Q Consensus 482 ~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~ll~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~~~~~~~~~~~g~l 561 (1444)
++ ........
T Consensus 643 -----------------------------------------------------------~~--~l~~~~~~--------- 652 (986)
T 2iw3_A 643 -----------------------------------------------------------YE--ELSNTDLE--------- 652 (986)
T ss_dssp -----------------------------------------------------------SS--STTTCCCC---------
T ss_pred -----------------------------------------------------------HH--HHHHHHHH---------
T ss_conf -----------------------------------------------------------98--64454432---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999999999998720003677610188658023699999998439999999887543220456787769999999
Q 000524 562 FFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYL 641 (1444)
Q Consensus 562 f~~l~~~~f~~~~~~~~~~~~~~vf~kqr~~~fy~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~ig~~~~~~~ff~~~l 641 (1444)
+
T Consensus 653 --------------------------------~----------------------------------------------- 653 (986)
T 2iw3_A 653 --------------------------------F----------------------------------------------- 653 (986)
T ss_dssp --------------------------------C-----------------------------------------------
T ss_pred --------------------------------C-----------------------------------------------
T ss_conf --------------------------------0-----------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999820116889899999999999884042375551246899987749999999999986238854
Q 000524 642 LFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW 721 (1444)
Q Consensus 642 ~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1444)
.+
T Consensus 654 ------------------------------------------------------------------------------~~ 655 (986)
T 2iw3_A 654 ------------------------------------------------------------------------------KF 655 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------CC
T ss_conf ------------------------------------------------------------------------------35
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43478875430578772058664314799989999999999999999999972014788531223321111111122332
Q 000524 722 KKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTV 801 (1444)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~Lig~~i~f~~~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1444)
. .+ +.
T Consensus 656 p--~~--------------~~----------------------------------------------------------- 660 (986)
T 2iw3_A 656 P--EP--------------GY----------------------------------------------------------- 660 (986)
T ss_dssp C--CC--------------CC-----------------------------------------------------------
T ss_pred C--CC--------------CC-----------------------------------------------------------
T ss_conf 6--55--------------54-----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEE
Q ss_conf 23457898876667788851012210159998766866678883248831165661440232105447854884501787
Q 000524 802 QLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGA 881 (1444)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~ 881 (1444)
. . . .+ +.....+.++|+++.++. ..+.+|+|+|+.
T Consensus 661 -----------~------~---------~---~~-----~~~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~ 695 (986)
T 2iw3_A 661 -----------L------E---------G---VK-----TKQKAIVKVTNMEFQYPG-----------TSKPQITDINFQ 695 (986)
T ss_dssp -----------C------T---------T---CC-----STTSEEEEEEEEEECCTT-----------CSSCSEEEEEEE
T ss_pred -----------C------C---------C---CC-----CCCCCEEEEEEEEEEECC-----------CCCEEEECCEEE
T ss_conf -----------3------3---------4---56-----678706999846998189-----------874134322799
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCC----CCCCCHHHHHHHHH
Q ss_conf 72891999965799955789964518978963799999959027811223258997048988----99875879999987
Q 000524 882 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH----SPFVTVYESLLYSA 957 (1444)
Q Consensus 882 i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~----~~~lTv~E~l~f~a 957 (1444)
+++|+++||+|+||||||||+++|+|.... .+|+|.++|. ..++|++|+..+ ....|++|.+.+..
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~ 765 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 828978999899998799999999579888--8608998686--------425763130243321001147999988775
Q ss_pred HHC------------C----------------------------------------------------------------
Q ss_conf 711------------9----------------------------------------------------------------
Q 000524 958 WLR------------L---------------------------------------------------------------- 961 (1444)
Q Consensus 958 ~lr------------~---------------------------------------------------------------- 961 (1444)
... .
T Consensus 766 q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~ 845 (986)
T 2iw3_A 766 QTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI 845 (986)
T ss_dssp TTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEE
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 04502555543321034355544200011232012344445554312220021000255432000001234323443210
Q ss_pred CC----------------------CCCHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99----------------------9998899999999999939941-1-1011269988767998888999999995199
Q 000524 962 PP----------------------EVDSETRKMFIEEVMELVELKP-L-IQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017 (1444)
Q Consensus 962 ~~----------------------~~~~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p 1017 (1444)
+. ..........++++++.++|.. . .+..+ +.||||||||+.||++|+.+|
T Consensus 846 ~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P 920 (986)
T 2iw3_A 846 PRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRP 920 (986)
T ss_dssp EGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCC
T ss_conf 167776667665544324555430223234799999999976998054448980-----423999999999999998399
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 778994999999999999999999999848988999954887789973065879925949999848
Q 000524 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1083 (1444)
Q Consensus 1018 ~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~~gG~~vy~G~ 1083 (1444)
++|+|||||+|||..+...+++.+++. +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 921 ~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 921 HLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 999997986577999999999999974---997999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=446.14 Aligned_cols=436 Identities=22% Similarity=0.274 Sum_probs=307.9
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEECEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 37521056884884999976999968999999846999999801199---------9978418998-----755218997
Q 000524 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV---------TYNGHDMGEF-----VPERTAAYI 231 (1444)
Q Consensus 166 ~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL~~LaG~l~~~~~~sG~I---------~~nG~~~~~~-----~~~r~~aYv 231 (1444)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 478887899---99999999865611788335676898898664099999997899999873223355799999999199
Q 000524 232 SQHDNHIGE---MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1444)
Q Consensus 232 ~Q~D~~~~~---lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~d~d~~~ka~~~~~~~~~~~~d~il~~LGL 308 (1444)
.|....++. .||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 43234434475565566445457999999724985351335998999898999999999987704997999983590048
Q 000524 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1444)
Q Consensus 309 ~~~~dT~VG~~~~rgLSGGQRkRvsiaeaLv~~~~vLlLDEpTsGLDs~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~ 388 (1444)
++..|..++ .|||||||||+||++++.+|++|+|||||++||..++.++++.|+++.+ .+.|+|+ +.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~-vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLV-VEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-5987999-94788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83127599972982999618555999998459879999994679975158000112100269987668998999999807
Q 000524 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSF 468 (1444)
Q Consensus 389 ~~lFD~IilL~~G~ivy~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~~ 468 (1444)
..++|+|++|.+|...|.- . ..+
T Consensus 222 ~~~~dri~vl~~~~~~~~~----------------------------------------~-~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYGI----------------------------------------F-SQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEEE----------------------------------------E-CCC----------------
T ss_pred HHHCCEEEEECCCCCCCCC----------------------------------------C-CCH----------------
T ss_conf 9768899998686324402----------------------------------------2-553----------------
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00010577513866675322112236655774689999999999999631716789999999999999987641124688
Q 000524 469 HVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHK 548 (1444)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~ll~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1444)
+. . +..+ . . +. .
T Consensus 245 ----------------------------~~----~-------~~~~----------~--------~------~~--~--- 256 (538)
T 1yqt_A 245 ----------------------------KG----T-------RNGI----------N--------E------FL--R--- 256 (538)
T ss_dssp ----------------------------EE----H-------HHHH----------H--------H------HH--H---
T ss_pred ----------------------------HH----H-------HHHH----------H--------H------HH--H---
T ss_conf ----------------------------55----8-------9999----------9--------8------76--4---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76555212778999999999999999999872000367761018865802369999999843999999988754322045
Q 000524 549 HSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1444)
Q Consensus 549 ~~~~~~~~~~g~lf~~l~~~~f~~~~~~~~~~~~~~vf~kqr~~~fy~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~ig 628 (1444)
T Consensus 257 -------------------------------------------------------------------------------- 256 (538)
T 1yqt_A 257 -------------------------------------------------------------------------------- 256 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 67877699999999999999999999999982011688989999999999988404237555124689998774999999
Q 000524 629 CDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFGTFALLVLFALGGFVLSREDIKKWWKWAYWCSPMSYAQ 708 (1444)
Q Consensus 629 ~~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 708 (1444)
|+...
T Consensus 257 ------------------------------------------------------~~~~~--------------------- 261 (538)
T 1yqt_A 257 ------------------------------------------------------GYLKD--------------------- 261 (538)
T ss_dssp ------------------------------------------------------TEETT---------------------
T ss_pred ------------------------------------------------------HCCCH---------------------
T ss_conf ------------------------------------------------------02300---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999862388544347887543057877205866431479998999999999999999999997201478853122332
Q 000524 709 NAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEES 788 (1444)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~Lig~~i~f~~~~~l~L~~~~~~~~~~~~~~~~~ 788 (1444)
. .. .. . ....
T Consensus 262 ------------------~---~~--------~~---------------------------------~-~~~~------- 271 (538)
T 1yqt_A 262 ------------------E---NV--------RF---------------------------------R-PYEI------- 271 (538)
T ss_dssp ------------------T---TE--------EC---------------------------------S-SSCC-------
T ss_pred ------------------H---HH--------CC---------------------------------C-CCCC-------
T ss_conf ------------------2---32--------03---------------------------------4-4455-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCC
Q ss_conf 11111111223322345789887666778885101221015999876686667888324883116566144023210544
Q 000524 789 ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVL 868 (1444)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~~~~~ 868 (1444)
. .. .. . ... . +.....+.++|+++.+.
T Consensus 272 -~-------~~-------------~~-----~------~~~----~------~~~~~~l~~~~l~~~~~----------- 298 (538)
T 1yqt_A 272 -K-------FT-------------KT-----G------ERV----E------IERETLVTYPRLVKDYG----------- 298 (538)
T ss_dssp -C-------CC-------------CS-----S------GGG----S------SCCCEEEEECCEEEEET-----------
T ss_pred -C-------CC-------------CC-----C------CCC----C------CCCCEEEEEEEEEEEEC-----------
T ss_conf -5-------45-------------57-----7------655----6------67871899930799989-----------
Q ss_pred CCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 78548845017877289199996579995578996451897896379999995902781122325899704898899875
Q 000524 869 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 948 (1444)
Q Consensus 869 ~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 948 (1444)
. ..|+++++.+++||++||+|+||||||||+++|+|.... .+|+|.+ ...++|++|+....+..|
T Consensus 299 --~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~t 363 (538)
T 1yqt_A 299 --S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGT 363 (538)
T ss_dssp --T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSB
T ss_pred --C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCC
T ss_conf --9-899907441289989999889999999999999679989--9718998----------746999826776788885
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 87999998771199999988999999999999399411101126998876799888899999999519977899499999
Q 000524 949 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1444)
Q Consensus 949 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsg 1028 (1444)
|.|.+......... ..+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 364 v~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 364 VYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAY 431 (538)
T ss_dssp HHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999864036887-------8999999999749915653994-----44899999999999999728998999398010
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999999999999984-8988999954887789973065879925-949999848986
Q 000524 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGR 1086 (1444)
Q Consensus 1029 LD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~-gG~~vy~G~~g~ 1086 (1444)
||..+...+++.++++++ .|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+
T Consensus 432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 89999999999999999867989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=444.48 Aligned_cols=215 Identities=21% Similarity=0.295 Sum_probs=152.0
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CEECEEEECCCC
Q ss_conf 41375210568848849999769999689999---------------------99846999999----801199997841
Q 000524 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLL---------------------LALAGKLDSSL----KVSGRVTYNGHD 218 (1444)
Q Consensus 164 ~~~IL~~vsg~i~pG~lt~IlGpsGSGKSTLL---------------------~~LaG~l~~~~----~~sG~I~~nG~~ 218 (1444)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...++. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 899875521899747888-------------------7899999999998656117883356768988986640999999
Q 000524 219 MGEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279 (1444)
Q Consensus 219 ~~~~~~~r~~aYv~Q~D~-------------------~~~~lTVrEtL~Faa~~~g~~~~~~~~~~~~~~e~~~~~~p~~ 279 (1444)
.... +++.++|+.|... .++.+||+|++.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCH
Q ss_conf 97899999873223355799999999199432-34434475565566445457999999724985--3513359989998
Q 000524 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1444)
Q Consensus 280 d~d~~~ka~~~~~~~~~~~~d~il~~LGL~~~-~dT~VG~~~~rgLSGGQRkRvsiaeaLv~~~~--vLlLDEpTsGLDs 356 (1444)
.+... .+..... .+++.+||++- .|..++ .|||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 172 -~~~~~-------~~~~~~~-~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHHH-HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHHHH-HHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -88889-------9999999-899975984344149700-----189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 989999999999877049979999835900488312759997------298299961855599
Q 000524 357 STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1444)
Q Consensus 357 ~ta~~Iv~~Lr~~a~~~~~tvIisl~Qp~~e~~~lFD~IilL------~~G~ivy~Gp~~~~~ 413 (1444)
.+..++++.|+++.. .+.|+|+ ++|.... ...+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-4998999-9578799-9629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=435.29 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=168.3
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 24883116566144023210544785488450178772891999965799955789964518978963799999959027
Q 000524 846 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 925 (1444)
Q Consensus 846 ~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1444)
.+.+++++..+. . ..|+.+++.+++||+++|+|+||||||||+++|+|.... .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979-------------8-899826646889989999999999899999999578889--9818999984--
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122325899704898899875879999987711999999889999999999993994111011269988767998888
Q 000524 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 1005 (1444)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1444)
.++|++|+.......||+|++.+....... . ....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDALS---T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTTC---T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHCCC---H---HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------567614000345477799999875531121---1---6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECC
Q ss_conf 99999999519977899499999999999999999999984-89889999548877899730658799259-49999848
Q 000524 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG-GQEIYVGP 1083 (1444)
Q Consensus 1006 Rl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~g-G~~vy~G~ 1083 (1444)
|++||++|+.+|++|+|||||+|||..++..+++.++++++ .|.|||+++|+.. ++...+|++++|+.+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 986504799999819
Q 000524 1084 LGRHSCQLISYFEAI 1098 (1444)
Q Consensus 1084 ~g~~~~~~~~yF~~~ 1098 (1444)
.......+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=424.50 Aligned_cols=201 Identities=18% Similarity=0.179 Sum_probs=157.0
Q ss_pred EEEECCEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 8845017877289-----19999657999557899645189789637999999590278112232589970489889987
Q 000524 873 VLLNGLSGAFRPG-----VLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 947 (1444)
Q Consensus 873 ~iL~~vs~~i~pG-----~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 947 (1444)
..++++|+.+++| |+++|+|+||||||||+++|+|.... .+|+. .. ....+|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 58799999877119999998899999999999939941110112699887679988889999999951997789949999
Q 000524 948 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1444)
Q Consensus 948 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs 1027 (1444)
||+|.+... .+. ... ....++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 9999999999999999984-8988999954887789973065879925-949999848986504799999819
Q 000524 1028 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGRHSCQLISYFEAI 1098 (1444)
Q Consensus 1028 gLD~~sa~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~ll~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1098 (1444)
|||..+...+++.++++++ .|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+--.....+.+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=334.05 Aligned_cols=214 Identities=27% Similarity=0.379 Sum_probs=181.0
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 83248831165661440232105447854884501787728919999657999557899645189789637999999590
Q 000524 844 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 923 (1444)
Q Consensus 844 ~~~i~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 923 (1444)
...++|+|++++++.. +...+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 2781---1223258997048988998758799999877119999998899999999999939941-------11011269
Q 000524 924 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGL 993 (1444)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~ 993 (1444)
+.++ ..+++.++||+|+..++ +-|++||+.|+. | +.+. +.++++++..++.+ -.|+.||.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~----~-~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK----E-GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC----T-TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC----C-CCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415----5-2209----99999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 98876799888899999999519977899499999999999999999999984898899995488778997306587992
Q 000524 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1073 (1444)
Q Consensus 994 ~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~ 1073 (1444)
.|. .||||||||++|||+++++|+|++||||||+||+.+...|.+.++++. .|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 59499998489
Q 000524 1074 RGGQEIYVGPL 1084 (1444)
Q Consensus 1074 ~gG~~vy~G~~ 1084 (1444)
+ |+++..|+.
T Consensus 627 ~-G~ive~Gth 636 (1321)
T 4f4c_A 627 N-GQVVEVGDH 636 (1321)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEECCCCH
T ss_conf 9-965136899
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=334.03 Aligned_cols=197 Identities=27% Similarity=0.392 Sum_probs=144.5
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCCC--C--CEEE------EEEEECCCCCCCCC----
Q ss_conf 884501787728919999657999557899---------64518978--9--6379------99999590278112----
Q 000524 873 VLLNGLSGAFRPGVLTALMGVSGAGKTTLM---------DVLSGRKT--G--GYIT------GNITISGYPKKQET---- 929 (1444)
Q Consensus 873 ~iL~~vs~~i~pG~~~al~G~sGaGKTTLl---------~~Lag~~~--~--~~~~------G~i~i~g~~~~~~~---- 929 (1444)
..|+|||+.+++|++++|+|+||||||||+ +.+.+... + ..+. +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred -----------------------------C-----------CCEEEEEECCCCCCC------------------------
Q ss_conf -----------------------------2-----------325899704898899------------------------
Q 000524 930 -----------------------------F-----------ARISGYCEQNDIHSP------------------------ 945 (1444)
Q Consensus 930 -----------------------------~-----------~~~~gyv~Q~d~~~~------------------------ 945 (1444)
| ....||+.++....|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------875879999987711999999889999999999993994111011269988767998888999999995199
Q 000524 946 --------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017 (1444)
Q Consensus 946 --------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p 1017 (1444)
.+||.|++.|.... .....+.++|+.++|.... .|.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCC
Q ss_conf ---77899499999999999999999999984898899995488778997306587992-----59499998489
Q 000524 1018 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1084 (1444)
Q Consensus 1018 ---~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~ll~-----~gG~~vy~G~~ 1084 (1444)
++|+|||||+|||..+...+++.|+++++.|.|||++.|+. +....+|++++|. +||++++.|++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 88978999798889999999999999999996699899993799--99972999999668777789789997699
Done!