Your job contains 1 sequence.
>000525
MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS
CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQ
PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDA
QQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPH
AFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKK
NIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSW
NWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSI
HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK
QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS
VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKV
LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLM
VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK
DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECA
KSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYD
GTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSP
LLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSM
IIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDML
ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK
VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD
NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA
LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII
YSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDF
ETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLG
IEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRL
GTA
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000525
(1443 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 3703 0. 1
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras... 553 1.3e-98 3
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 320 1.5e-49 5
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 328 1.7e-46 5
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 432 1.6e-44 4
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 295 1.5e-43 4
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 305 1.9e-43 6
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 320 2.7e-43 5
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 368 5.0e-43 4
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 368 5.0e-43 4
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 306 2.8e-41 6
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 292 4.3e-41 5
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 310 9.9e-41 4
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 276 2.4e-40 4
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 296 2.8e-40 7
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 300 8.4e-40 5
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 274 2.1e-39 4
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 275 2.6e-39 4
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 274 2.6e-39 4
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 277 3.2e-39 4
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 271 5.5e-39 4
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 273 6.9e-39 4
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 280 1.4e-38 4
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 266 2.3e-38 4
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 297 4.2e-38 6
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 311 7.3e-38 6
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 311 7.3e-38 6
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 297 1.7e-37 6
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 297 2.1e-37 6
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 297 4.3e-37 6
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 297 4.3e-37 6
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 297 4.3e-37 6
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 297 4.3e-37 6
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 345 5.6e-37 5
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 345 5.6e-37 5
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 358 1.2e-36 4
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 297 1.6e-34 5
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 172 1.9e-32 5
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 165 1.9e-30 6
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 165 2.1e-30 6
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 163 5.9e-30 5
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 170 7.1e-30 6
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 170 9.0e-30 6
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 350 1.1e-29 2
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 173 2.2e-29 6
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 163 2.5e-29 6
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 162 2.5e-29 6
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 159 5.1e-29 6
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 158 1.2e-28 5
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 149 1.5e-28 5
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 159 2.6e-28 6
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 173 7.6e-28 5
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 207 1.2e-26 4
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 166 2.6e-26 5
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 269 2.2e-24 3
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 189 4.4e-24 4
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 164 2.4e-22 6
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 159 8.1e-15 5
TAIR|locus:504956149 - symbol:AT1G45230 "AT1G45230" speci... 161 2.3e-10 1
TAIR|locus:2075190 - symbol:AT3G46630 "AT3G46630" species... 156 7.9e-10 1
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme... 121 3.1e-09 3
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 125 1.6e-08 5
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 128 3.9e-06 4
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer... 122 5.4e-06 3
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer... 122 5.4e-06 3
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer... 122 5.4e-06 3
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer... 122 5.4e-06 3
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 129 6.0e-06 4
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 131 7.8e-06 5
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 129 2.9e-05 6
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 125 5.7e-05 4
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein... 121 0.00029 2
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 122 0.00031 3
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 124 0.00034 4
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 123 0.00051 4
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 3703 (1308.6 bits), Expect = 0., P = 0.
Identities = 759/1463 (51%), Positives = 1012/1463 (69%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS 60
M+++ CEE L+VP G LT I IS + +++K+SV+E+ A ++VT+ RLGLPNP + C +
Sbjct: 1 MEDD-CEE-LQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRT 58
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQ 120
CG+KDRK CEGHFG I F ++I++PYFL ++A LLN ICP CK IRK++ + ++Q
Sbjct: 59 CGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQ----ITEDQ 114
Query: 121 PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK-----LPDDYWGF 175
P C+YC N YP M+F++++K++ ++ I+VE++E+ K KK LP DYW F
Sbjct: 115 PERCRYCTLNTG--YPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLTLPPDYWSF 172
Query: 176 IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRV 235
+P D+ +E+ +KP R++++ QV LL +D + ++ I ++ L FPVTPN +RV
Sbjct: 173 LPQDSNIDESCLKPTRRIITHAQVYALLLGIDQRLIKKDIPMFNSLGLTSFPVTPNGYRV 232
Query: 236 TEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDK-SSRKDSA 294
TE+ H F+ + L FD TR KK+V + G +ELS V +C++ S+L + SS KDSA
Sbjct: 233 TEIVHQFNGAR-LIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSA 291
Query: 295 EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
QKK+ D GLR++KDV+LGKR+D FR VV GDP++KL EIGIP +A+RLQ+S
Sbjct: 292 NPYQKKS-DTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVS 350
Query: 355 ERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLI 414
E LN N ERL LL+ E++V R LV I+ ++ L+ GD I+R L DGD VL+
Sbjct: 351 EHLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLM 409
Query: 415 NRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
NRPPSIH HSLIA+TV++LP +SVV++NP+CC PF GDFDGDCLHGY+PQ+I A+VEL E
Sbjct: 410 NRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDE 469
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPHRFLSPDI 533
LVALDKQLIN+Q+GRNLLSLGQDSLTAA+L+ +E + +CP + P I
Sbjct: 470 LVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAI 529
Query: 534 FKISKDSV---WSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYEGNLF 589
K S S W+G QLF ML PP F+YT+P +V +S G+L+S +EGS+WLRD EGN
Sbjct: 530 IKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFI 589
Query: 590 QYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+ L+K + KVLD +Y+AQE+L +WL +RG++VSL+DLYL+S SRK L +EI YGLRE
Sbjct: 590 ERLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLRE 649
Query: 650 AQDTCNFQQLMVDSHMNFL-MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
A+ CN QQLMV+S +FL ++ +D E YE+Q+SA LS+ +V AFK +
Sbjct: 650 AEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYR 709
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
D+Q LAY+YG + NS L M KAGSKGN+ KLVQHS+C+GLQ+S LSF FP EL+CAAW
Sbjct: 710 DVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAW 769
Query: 769 NR----LRA--GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPG 822
N LR G ++ +SY+P V+ENSFLTGLNPLE F+HSVTSRDSSFS NADLPG
Sbjct: 770 NDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPG 829
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
TL+RRLMFFMRD+ AYDGTVRN++GNQ+VQF+Y +G P +I + +GSLSACA+S
Sbjct: 830 TLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG---PVEDITGEALGSLSACALS 886
Query: 883 EAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALE 942
EAAYSALDQPISLLETSPLLNLKNVLECGSKK +QTMSL+LS L K++HGFEYG+LE
Sbjct: 887 EAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHGFEYGSLE 946
Query: 943 VKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLY 1002
+KNHLE L S+IVSTSMII+SP + + SPW+CHFH+ ++++KR L S++ SL
Sbjct: 947 IKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAESVVSSLN 1006
Query: 1003 RQCKAARTELKISVPDMLISNKD-CSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQM 1061
Q K+ ELK+ + D+ I N + CSS + + +D C+TV +VE K + ++L+ I++
Sbjct: 1007 EQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMK-DDNVCITVTVVEASKHSVLELDAIRL 1065
Query: 1062 WVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSF-GELYLRVSMSGQCHITSLWSA 1120
++PFLL + VKG + IKKV+ILW D+ KA K + + GELYL+V+M G + W+A
Sbjct: 1066 VLIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGKRNCWTA 1125
Query: 1121 LMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLI 1180
L+ C IMDMIDW RSHPDNIR C YGIDAG F+ NLESA+SDTGK IL EHLL+
Sbjct: 1126 LLETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLL 1185
Query: 1181 VANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSV 1240
VA++LS TGEFV LNAKG + QR+ S +PF QA FS+P F+KAAK G D+LQGS+
Sbjct: 1186 VADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSI 1245
Query: 1241 DALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLS-TPVSSKQNEKLKVCKAQGLI 1299
DAL WGKVP GTG F+II S + + PVDVY+LLS T + N K KA
Sbjct: 1246 DALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPKSDKAT--- 1302
Query: 1300 SDKCGAKFGDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSE 1359
G F K + LD + I +LR +T+ ++ LS +LK+ILH Y I + L+E
Sbjct: 1303 VQPFGLLHSAF-LKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKRILHSYEINELLNE 1361
Query: 1360 KDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVI 1419
+D+ V L HP EK+G I V +H +S CF +VR DG+ EDFSYHKCV+
Sbjct: 1362 RDEGLVKMVLQLHPNSVEKIGPGVKGIRVA-KSKHGDSCCFEVVRIDGTFEDFSYHKCVL 1420
Query: 1420 GALEIIAPEKAEIYRAKWKRLGT 1442
GA +IIAP+K Y++K+ + GT
Sbjct: 1421 GATKIIAPKKMNFYKSKYLKNGT 1443
>TAIR|locus:2061151 [details] [associations]
symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
[GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
"posttranscriptional gene silencing by RNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
"regulation of cell cycle" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
GO:GO:0000419 Uniprot:Q5D869
Length = 1976
Score = 553 (199.7 bits), Expect = 1.3e-98, Sum P(3) = 1.3e-98
Identities = 171/653 (26%), Positives = 308/653 (47%)
Query: 7 EEGLEVPSGILTGISLGISTDTEK--EKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E E+ G + GI+ +++ E + +S I S++TN LGLP +C SCGA
Sbjct: 4 ESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCGAT 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP ++++ ++L+ +C KC I+K + G+S R+
Sbjct: 64 EPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAK----GTSGGLADRLL 119
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQE 183
C +Q +S KD + A +E+ KL +++ P W F+ + +
Sbjct: 120 GVCCEEASQ--------ISIKDRASDGASYLEL--KLPSRSRLQPG-CWNFLERYGYRYG 168
Query: 184 ENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP----FLKCFPVTPNNHRVTEVP 239
+ +P L ++V +L+ + R++ P L+ PV PN V E
Sbjct: 169 SDYTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEAS 224
Query: 240 HAFS----HEKKLFFDNWTRHLKKMVDYRGRDIEL-SHLVQ--DCLKISKLHLD-KSSRK 291
FS ++ + + + + R + SH + + ++ +L + + K
Sbjct: 225 DGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAK 284
Query: 292 DSAEVRQKKNID-ISNSSGLR-W---IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQ 346
+ + + + IS+SS + W ++ + + K + R V+TGD + E+GIP +
Sbjct: 285 AARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIE 344
Query: 347 VAERLQISERLNSWN---WERL---SVCISFRLLEKGELYVCRKGGLVRIRRIDALELGD 400
+A+R+ ER++ N ++L +C+S+ + Y R G + L+ G
Sbjct: 345 IAQRITFEERVSVHNRGYLQKLVDDKLCLSYT--QGSTTYSLRDGS----KGHTELKPGQ 398
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
+++R + DGD+V INRPP+ H HSL AL V V + V INPL CSP DFDGDC+H
Sbjct: 399 VVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHL 457
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXX 520
+ PQ++ A+ E+ EL +++KQL++ +G+ +L +G DSL + +++E V
Sbjct: 458 FYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKATAQQL 516
Query: 521 XXFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAE-GS 578
+ P + K SK W+ Q+ + P + + G L+ + G
Sbjct: 517 AMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFPE--RLSCKGDRFLVDGSDLLKFDFGV 574
Query: 579 SWLRDYEGNLFQYL-IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
+ + + +++ + L F + Q +L E L G ++SL DL ++
Sbjct: 575 DAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSMS 627
Score = 425 (154.7 bits), Expect = 1.3e-98, Sum P(3) = 1.3e-98
Identities = 136/494 (27%), Positives = 228/494 (46%)
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG--EIGDQPVGSLSA 878
PGTL + LM +RD+ DGTVRN N ++QF Y ++ G E G+ PVG L+A
Sbjct: 775 PGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGE-PVGVLAA 833
Query: 879 CAISEAAYSA-LDQPISLLETSPLLNLKNVLECGSKKSNA--DQTMSLFLSNKLGKRRHG 935
A+S AY A LD + + L+ K VL C N D+ + L+L+ +R
Sbjct: 834 TAMSNPAYKAVLDSSPNSNSSWELM--KEVLLCKVNFQNTTNDRRVILYLNECHCGKRFC 891
Query: 936 FEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWIC---HFHVRKEIMKRTGL 992
E A V+N L + L D ++ Y Q + F C H H+ K +++ +
Sbjct: 892 QENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIHLNKTLLQDWNI 951
Query: 993 -------KEHSIIDSL-YRQCKAARTELK---ISVPDMLISNKDCSSINMQKECNDAFCV 1041
K +I+SL ++ K A + K +SV + C S + +D C+
Sbjct: 952 SMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGS-----KGSDMPCL 1006
Query: 1042 TVMIVENFKRTSIDLE-TIQMW---VMPFLLKTVVKGFREIKKVDILWKDKQKAS---KS 1094
T ++ T DLE T+ + V P LL+ V+KG I +I+W +
Sbjct: 1007 TF----SYNATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNR 1062
Query: 1095 HDDSFGELYLRVSMSGQCHITS--LWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGID 1152
H GE L V++ S W +++ C ++ +ID RS P +++ G+
Sbjct: 1063 HASRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSVKQVQELLGLS 1122
Query: 1153 AGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPF 1212
+ + L +++ K +L EH++++AN ++ +G +G N+ G + ++ +PF
Sbjct: 1123 CAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALTRSLNIKAPF 1182
Query: 1213 VQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLS--K 1270
+A P F KAA+ D+L V + WGK VGTG F+++++ + L +
Sbjct: 1183 TEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGLDDKE 1242
Query: 1271 PVDVYNLLSTPVSS 1284
DVY+ L +S+
Sbjct: 1243 ETDVYSFLQMVIST 1256
Score = 268 (99.4 bits), Expect = 4.0e-82, Sum P(3) = 4.0e-82
Identities = 115/429 (26%), Positives = 189/429 (44%)
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN 769
++ +A + K S+ + S + KLVQ + LGLQ S + A +
Sbjct: 666 VKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFC 725
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRR 827
+ + G + + +V+ F GL+P E HS+ +R+ + L PGTL +
Sbjct: 726 KRKYG-RISSSGDF---GIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKN 781
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG--EIGDQPVGSLSACAISEAA 885
LM +RD+ DGTVRN N ++QF Y ++ G E G+ PVG L+A A+S A
Sbjct: 782 LMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGE-PVGVLAATAMSNPA 840
Query: 886 YSALDQPISLLETSPLLN-----LKNVLECGSKKSNA--DQTMSLFLSNKLGKRRHGFEY 938
Y A+ L++SP N +K VL C N D+ + L+L+ +R E
Sbjct: 841 YKAV------LDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQEN 894
Query: 939 GALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWIC-HFHVRKEIMKRTGLKEHSI 997
A V+N L + L D ++ Y Q + F C H H+ + +T L++ +I
Sbjct: 895 AACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIFGIDSCLHGHIH---LNKTLLQDWNI 951
Query: 998 -IDSLYRQCKAARTEL-----KISVPDML---ISNKDCSSIN--MQKECNDAFCVTVMIV 1046
+ ++++C+ L K + D +S +C S + +D C+T
Sbjct: 952 SMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSECCSFRDPCGSKGSDMPCLTF--- 1008
Query: 1047 ENFKRTSIDLE-TIQMW---VMPFLLKTVVKGFREIKKVDILWKDKQKAS---KSHDDSF 1099
++ T DLE T+ + V P LL+ V+KG I +I+W + H
Sbjct: 1009 -SYNATDPDLERTLDVLCNTVYPVLLEIVIKGDSRICSANIIWNSSDMTTWIRNRHASRR 1067
Query: 1100 GELYLRVSM 1108
GE L V++
Sbjct: 1068 GEWVLDVTV 1076
Score = 159 (61.0 bits), Expect = 1.3e-98, Sum P(3) = 1.3e-98
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 1335 NDVLRLSNALKKILHK--YSIGQRLSEKDKTTVI-RALYFHPRRNEKLGIEPPDIEVTYH 1391
+DV + L+KI+H Y G +S+ DKT V+ + L FHP++ KLG I V H
Sbjct: 1741 SDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKH 1800
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437
+SRCF +V DG+ +DFSY K + L P++AE + K+
Sbjct: 1801 TIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846
Score = 54 (24.1 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 572 LISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFL 604
++S +G+ Y +L YL+K+Y D+ +F+
Sbjct: 1811 VVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFI 1843
Score = 48 (22.0 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1317 NLDFETISRGVLRKSWTYNDVLRLSNALKKI 1347
NL IS V R +Y D L+L N++ K+
Sbjct: 636 NLIIREISPMVSRLRLSYRDELQLENSIHKV 666
Score = 42 (19.8 bits), Expect = 1.3e-44, Sum P(3) = 1.3e-44
Identities = 20/89 (22%), Positives = 37/89 (41%)
Query: 673 DSESTRSLQGEHLSYEKQRSAALSQASV---DAFKHVFWDIQNLAYKYGSKDNSLLAMFK 729
DS S+++ + + ++ + S SV DA++HV + + + + +
Sbjct: 300 DSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHV--NEVGIPIEIAQRI-TFEERVS 356
Query: 730 AGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
++G L KLV LCL S R
Sbjct: 357 VHNRGYLQKLVDDKLCLSYTQGSTTYSLR 385
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 320 (117.7 bits), Expect = 1.5e-49, Sum P(5) = 1.5e-49
Identities = 76/251 (30%), Positives = 138/251 (54%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +++ I
Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNG 400
Query: 373 LLEK-GELYVCRKGGL---VR-IRRI-DA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R+ G +R ++++ D LE G + R + DGD+V+ NR PS+H S+
Sbjct: 401 PSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSM 460
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +KV+P S+ +N SP++ DFDGD ++ ++PQ + R E+ E++ + +Q+++
Sbjct: 461 MGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSP 519
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+L + L + + P + P I K + +W
Sbjct: 520 QSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQ--LW 577
Query: 543 SGKQLFSMLLP 553
+GKQLFS+++P
Sbjct: 578 TGKQLFSLIIP 588
Score = 174 (66.3 bits), Expect = 1.5e-49, Sum P(5) = 1.5e-49
Identities = 47/144 (32%), Positives = 70/144 (48%)
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE 778
S+DN+L AM AGSKG+ + + Q C+G Q+ R P D
Sbjct: 747 SEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGK---RIPFGFQSRTLPHFTKDDYGP 803
Query: 779 CAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLC 836
++ + VENS+L GL P E F H++ R+ G + RRL+ M D+
Sbjct: 804 ESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVS 858
Query: 837 TAYDGTVRNAYGNQIVQFSYNIEG 860
YD TVRN+ G+ ++QF+Y +G
Sbjct: 859 IKYDATVRNSLGD-VIQFAYGEDG 881
Score = 112 (44.5 bits), Expect = 1.5e-49, Sum P(5) = 1.5e-49
Identities = 80/360 (22%), Positives = 156/360 (43%)
Query: 943 VKNHLECLMLSDIVSTSMIIYSP--QTGSMKHFSPWI-CHFHVRKEIMKRTGLKEHSIID 999
VK+ LE L+++ S + I Y P Q + + ++ +F + E + HS+
Sbjct: 1153 VKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDE-----EIDVHSMSP 1207
Query: 1000 SLYR--QCKAARTELKISVPDML-ISNKDCS-SIN-MQKECN-DAFCVTVMIVENFKRTS 1053
L R + T+ K+++ D+ +D S+N + + N + + + +VE+ +
Sbjct: 1208 WLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQETKG 1267
Query: 1054 IDLETIQMWVMPF----LLKTVVKGFREIKKVDILWKDK-QKASKSHDDSFGELYLRVSM 1108
D + ++ L + V++G + IKKV + DK K +++ E ++ +
Sbjct: 1268 TDNDDDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKVTENGGFGVREEWI-LDT 1326
Query: 1109 SGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISD 1168
G SL + + D +D TR+ ++I GI+A L L + IS
Sbjct: 1327 DG----VSLLEVMSHP-----D-VDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISF 1376
Query: 1169 TGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAA 1228
G + HL I+A+ ++ G + + G+ R + P ++ F + AA
Sbjct: 1377 DGSYVNYRHLAILADVMTYRGHLMAITRHGI--NRVETG---PLMRCSFEETVEILMDAA 1431
Query: 1229 KAGAVDNLQGSVDALGWGKVPSVGTGGH--F---DIIYSGEGRTLSKPVDVYNLLSTPVS 1283
D+++G + + G++P +GTG F D+I + L +P +V + TP S
Sbjct: 1432 MFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNV-SYPDTPGS 1490
Score = 97 (39.2 bits), Expect = 1.5e-49, Sum P(5) = 1.5e-49
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P +G + T C +C + C GHFG I+ + H F+ + K+L +C C +
Sbjct: 54 DPAMGTIDKTQRCQTCSGTMAE-CPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKL 112
Score = 70 (29.7 bits), Expect = 1.5e-49, Sum P(5) = 1.5e-49
Identities = 32/126 (25%), Positives = 55/126 (43%)
Query: 531 PDIFKISKDSVWSGKQLFSMLLPP----DFEYTFPSKD----------VYISGGKLISAE 576
P I K + +W+GKQLFS+++P F T K+ V I G+L++
Sbjct: 568 PAILKPKQ--LWTGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGI 625
Query: 577 -GSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
L G++ ++ + D F+ Q V+ WL RG T+ + D +A +
Sbjct: 626 LCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDT-IADSAT 684
Query: 635 SRKILM 640
K+ +
Sbjct: 685 MAKVTL 690
Score = 48 (22.0 bits), Expect = 5.4e-43, Sum P(5) = 5.4e-43
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 848 GNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQP 892
G+Q +SY +G++TP D P+ + + + SA++ P
Sbjct: 1489 GSQTPSYSYG-DGSTTPFHNPYDAPLSPFNETFRGDFSPSAMNSP 1532
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 367 VCISFRLLEKGELYVC 382
V FRL EK L+VC
Sbjct: 1050 VLTEFRLTEKAFLWVC 1065
Score = 39 (18.8 bits), Expect = 6.5e-18, Sum P(4) = 6.5e-18
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 231 NNHRVTEVPHAFSHEK-KLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSS 289
N + V + H+ +LF D + + RG + + + D ++K+ L SS
Sbjct: 635 NGSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISS 694
Query: 290 RKDSAE 295
K+ +
Sbjct: 695 AKNQVK 700
Score = 38 (18.4 bits), Expect = 3.8e-29, Sum P(5) = 3.8e-29
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 750 HSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECF--IHSV 807
HS++P R + +L D T+C ++ N + N + I V
Sbjct: 1203 HSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSL--NCIFSDDNAEKLILRIRMV 1260
Query: 808 TSRDSSFSDNAD 819
S+++ +DN D
Sbjct: 1261 ESQETKGTDNDD 1272
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 328 (120.5 bits), Expect = 1.7e-46, Sum P(5) = 1.7e-46
Identities = 82/250 (32%), Positives = 136/250 (54%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ ++ +P ++A+ L ER+ + N + L CI + + G
Sbjct: 352 GKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Query: 378 ELYVC-RKGGLVRIRRI-------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV R+ G R R D L++GDI+ R L D D+VL NR PS+H S++A
Sbjct: 412 ANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHL 471
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P ++ N C P++ DFDGD ++ ++PQ A+ E EL+ + L++ ++G
Sbjct: 472 VKVRPWRTL-RFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGE 530
Query: 490 NLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCP---HRFLSPDIFKISKDSVWSGK 545
+++ QD +TAA+LL ++D+ H L P I +W+GK
Sbjct: 531 PIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAI-IKPRCLWTGK 589
Query: 546 QLFSMLLPPD 555
Q+F++L+ P+
Sbjct: 590 QVFTVLMKPN 599
Score = 160 (61.4 bits), Expect = 1.7e-46, Sum P(5) = 1.7e-46
Identities = 49/151 (32%), Positives = 71/151 (47%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
NS L M GSKG+ + + Q C+G Q ++ R P + AK
Sbjct: 769 NSPLIMATCGSKGSKINVSQMVACVG-QQIIS--GKRVPDGFQDRSLPHFHKNSKHPLAK 825
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAY 839
+ V NSF +GL P E H+++ R+ G ++RRLM + DL +AY
Sbjct: 826 GF-----VSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAY 880
Query: 840 DGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
DGTVR++ + +VQF Y +G PT GD
Sbjct: 881 DGTVRSS-NSDVVQFVYGDDGLD-PTYMEGD 909
Score = 105 (42.0 bits), Expect = 1.7e-46, Sum P(5) = 1.7e-46
Identities = 32/147 (21%), Positives = 65/147 (44%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
T++ +++ GI+A ++ + ++ G + P H++++ + ++ GE +G+
Sbjct: 1258 TKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGI 1317
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
G+A + S A F AA A D+++G + + GK+ +GT
Sbjct: 1318 TRFGVAKMK-----DSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTN 1372
Query: 1255 GHFDIIYSGEGRTLSKPVDVYNLLSTP 1281
F +I E KP ++ L TP
Sbjct: 1373 V-FQLIRRTEEEEEQKPKEL--LFDTP 1396
Score = 98 (39.6 bits), Expect = 1.7e-46, Sum P(5) = 1.7e-46
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 49 LGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILH-PYFLSDIAKLLNSICPKCKTI 105
+G N C++CG + C GHFG++K + H YF + + +L +IC C ++
Sbjct: 57 MGTSNKQINCATCG-ESMADCMGHFGYVKLALPVFHIGYFKATLT-ILQNICKDCSSV 112
Score = 46 (21.3 bits), Expect = 1.7e-46, Sum P(5) = 1.7e-46
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 916 NADQTMSL-FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQT 967
NA +T+S ++ +L R E A VK +E L D+ S +Y P T
Sbjct: 1088 NAAKTISTPIITGQLINDRD--ERSARVVKGRIEKTYLKDVTSYIEEVYGPVT 1138
Score = 41 (19.5 bits), Expect = 5.7e-40, Sum P(5) = 5.7e-40
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 1155 LQFFLTNLESAISDTGKNILPEHLLIVANTL 1185
L L ++ +AI +T K +P + V NTL
Sbjct: 1155 LDITLADIAAAIWNTPKLKIPSQQVTVNNTL 1185
Score = 37 (18.1 bits), Expect = 7.4e-11, Sum P(4) = 7.4e-11
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRK 67
V E+ LG N ++CG+K K
Sbjct: 757 VGEICMDELGPANSPLIMATCGSKGSK 783
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 432 (157.1 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 178/639 (27%), Positives = 289/639 (45%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ + E+ +P +A + ER+ +N ERL I+ G
Sbjct: 351 GKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPG 410
Query: 378 ELYVCRKGGLVRIRRID-------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G+ + + L++GDI+ R + DGDI+L NR PS+H S+++
Sbjct: 411 ANYIIYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKA 470
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+V+P ++ N C+P++ DFDGD ++ ++PQ AR E T L+ + LI ++G
Sbjct: 471 RVMPWRTL-RFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEP 529
Query: 491 LLSLGQDSLTAAHLLME-DSVXXXXXXXXXXXXFCP---HRFLSPDIFKISKDSVWSGKQ 546
L++ QD LTA++L+ D+ F H L P + +W+GKQ
Sbjct: 530 LVAATQDFLTASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAI-LKPVELWTGKQ 588
Query: 547 LFSMLLPPDFEY----TFPSKD-VYISGGKLISAEGSSWLRDYE---GNLFQYLIKRYRD 598
+F +LL P + F ++ Y + +G + R+ E G++ + +I
Sbjct: 589 IFEVLLRPSVKSHVLCNFETRSRTYSKNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNK 648
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF-YGL---REAQDTC 654
L F +L S T++ + + + C+R L D+ F G+ + A+D
Sbjct: 649 NSL-F-----HILMRDFSP---TIAANCMTRLAKLCAR-FLGDQGFSIGIPDIKPAEDLD 698
Query: 655 NFQQLMVDS-HMNFLMSAKDSESTRSLQ-----GEHLSYEKQRSAALSQASVDAFKHVFW 708
++ ++++ + + KD ES SLQ ++E + + LSQ D K
Sbjct: 699 RKKREIIETAYKKCAVFLKDYESG-SLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVN 757
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
D+ N Y NS L M GSKG+ + + Q C+G Q R P+ +
Sbjct: 758 DLPN----Y----NSPLIMGLCGSKGSNINIAQMICCVGQQ---IVNGTRIPNGFT---- 802
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
NR AK+ V NSF TG+ P E F H++ R+ G + R
Sbjct: 803 NRTTPHFK-HFAKNPKSKGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQR 861
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG-EIGDQPVGSLSACAISEAA 885
RLM + DL T YD TVR++ G IVQF Y +G P G E D+PV L A ++
Sbjct: 862 RLMKALEDLSTHYDYTVRDSIGG-IVQFIYGDDGLD-PAGMEAKDRPVDFLRAMMSVKST 919
Query: 886 YSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLF 924
++P E P ++ ++E S + LF
Sbjct: 920 RQCRNEP----EMKPF-EIRKLVESIIDSSKFEACTDLF 953
Score = 113 (44.8 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 23/68 (33%), Positives = 34/68 (50%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + +LG + C++CG C GHFG+IK + H +L +I +L IC C
Sbjct: 53 VLDNKLGTSDKQAMCTTCGLSIVD-CVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCS 111
Query: 104 TIRKERQK 111
TI +K
Sbjct: 112 TILLNEEK 119
Score = 81 (33.6 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 27/121 (22%), Positives = 54/121 (44%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+ ++ ++ ++ G +I H++++A+ +S GE +G+ G+A ++
Sbjct: 1329 GIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKE----- 1383
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLS 1269
S + A F AA D++ G + + G V +GTG F ++ L
Sbjct: 1384 SVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTG-LFKLLRKSNKNNLP 1442
Query: 1270 K 1270
K
Sbjct: 1443 K 1443
Score = 42 (19.8 bits), Expect = 0.00096, Sum P(4) = 0.00096
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 137 RMRFKLSSKDLS-GKTAIIVE 156
R +FKLSS DL+ + II+E
Sbjct: 978 RKQFKLSSFDLNDNEDEIIIE 998
Score = 41 (19.5 bits), Expect = 1.6e-44, Sum P(4) = 1.6e-44
Identities = 13/74 (17%), Positives = 32/74 (43%)
Query: 933 RHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGL 992
R G Y +KN+L +++ I + + ++ S + + + + +R +M G+
Sbjct: 1253 REGSLYYLQFLKNNLPAVIVKGIPTVNRVVISKVDEKQERYQLLVEGYDLRA-VMATPGI 1311
Query: 993 KEHSIIDSLYRQCK 1006
K + +C+
Sbjct: 1312 KGTHTTSNHIMECE 1325
Score = 41 (19.5 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 980 FHVRKEIMKRT-GLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQK 1033
+++RK K+ L+ S++ ++ +C+ + LK + +I I +K
Sbjct: 122 YYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEK 176
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 295 (108.9 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 78/253 (30%), Positives = 124/253 (49%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+ + ++G+P +VA+ L ER+N N + + + + G
Sbjct: 357 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPG 416
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++G R + L+ GD++ R L DGDIVL NR PS+H S++
Sbjct: 417 ANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHR 476
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 477 AKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGE 535
Query: 490 NLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXX-FCP------HRFLSPDIFKISKDSVW 542
L++ QD +T +LL + V F H L P + +W
Sbjct: 536 ILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPAL-LKPRRLW 594
Query: 543 SGKQLFSMLLPPD 555
+GKQ+FS+L+ P+
Sbjct: 595 TGKQMFSLLMRPN 607
Score = 173 (66.0 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 71/244 (29%), Positives = 113/244 (46%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
NS L M +GSKG+ + + Q C+G Q A R P+ NR A + E
Sbjct: 773 NSALIMALSGSKGSNINISQMIACVGQQ---AISGKRVPNGFE----NR--ALPHFE-RH 822
Query: 782 SYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
S IP+A V+NSF +GL P E F H++ R+ G L RRL+ + DL
Sbjct: 823 SAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVV 882
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY-SALDQPISLL 896
YDGTVRNA N++V Y +G + E ++PV + A + D+P++
Sbjct: 883 HYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPVDLVHQYDNLRAQHPQGKDRPLNAE 941
Query: 897 ETSPLLN-LKNVLECGSKKSN--ADQTMSL-FLSNKLGKRRHGFEYGALEVKNHLECLML 952
E S L L E + + D + +S ++G+ + +E +++ + +ECL
Sbjct: 942 EMSEALETLLRTPEFAEARDDFKLDVRNHINTVSKRIGQLQKRYEK-CIDLCHQIECLTT 1000
Query: 953 SDIV 956
++
Sbjct: 1001 EQLL 1004
Score = 110 (43.8 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 33/138 (23%), Positives = 62/138 (44%)
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
R+ +NI GI+A ++ + + G ++ H++++A+ ++A GE +G+
Sbjct: 1238 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1297
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGG 1255
GLA R+ S F A F AA G D + G + + G +GTG
Sbjct: 1298 RHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG- 1351
Query: 1256 HFDIIYSGEGRTLSKPVD 1273
F ++ E + + P++
Sbjct: 1352 IFKLLQQHEDKQVP-PIE 1368
Score = 85 (35.0 bits), Expect = 1.5e-43, Sum P(4) = 1.5e-43
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILH-PYFLSDIAKLLNSICPKC 102
V + R+G+ C +CG + C GHFG++ + H +F S I +L IC C
Sbjct: 53 VLDRRMGISTKDAMCETCG-QGLNECIGHFGYLDLALPVFHIGHFRSTI-NILQMICKVC 110
Score = 44 (20.5 bits), Expect = 2.5e-17, Sum P(4) = 2.5e-17
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAI-GARVELTELVALDKQLINQ 485
AL V++L + VT P C SP G G L + G +++ +++ L +
Sbjct: 139 ALHVQMLAKAKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMNEMLRST 198
Query: 486 QSGRNLLS-LGQDSLTAAHL 504
Q+ R+L S LG S TA L
Sbjct: 199 QTNRDLNSTLGNYS-TAEEL 217
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 305 (112.4 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 77/251 (30%), Positives = 135/251 (53%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + ++ + G
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Query: 378 ELYVCR-----KGGLV---RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV + K L R++ L++GD++ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLLM-EDSVXXXXXXXXXXXXFCPH--RF--LSPDIFKISKDSVWSG 544
+++ QD +T ++L+ +DS +F P IFK +W+G
Sbjct: 545 PIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFK--PVMLWTG 602
Query: 545 KQLFSMLLPPD 555
KQ+FS+L+ P+
Sbjct: 603 KQVFSLLIKPN 613
Score = 150 (57.9 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 50/155 (32%), Positives = 72/155 (46%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N+ L M GSKG+ L + Q +G Q ++ R P + T +K
Sbjct: 784 NAPLIMATCGSKGSTLNVSQMVAVVG-QQIIS--GHRVPDGFQDRSLPHFTKNSKTPQSK 840
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAY 839
+ V NSF +GL P E H+++ R+ G ++RRLM + DL + Y
Sbjct: 841 GF-----VRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQY 895
Query: 840 DGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD-QPV 873
D TVRN+ N IVQF+Y +G P GD +PV
Sbjct: 896 DNTVRNS-SNGIVQFTYGGDGLD-PYDMEGDAKPV 928
Score = 114 (45.2 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 28/110 (25%), Positives = 51/110 (46%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSV--MEIGAVSE---VTNPRLGLPNPTNECSS 60
C +GLE G L+ + ++ E + + +E G V + + ++G+ + ECS+
Sbjct: 12 CIKGLEF--GALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECST 69
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
C + +C GHFG I+ + H + I +L IC C + + Q
Sbjct: 70 CHG-NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQ 118
Score = 93 (37.8 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 30/123 (24%), Positives = 56/123 (45%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A + ++ +S+ G ++ P H+ ++ + ++ GE +G+ GL+ R
Sbjct: 1317 GIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMR-----D 1371
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSG--EGRT 1267
S A F AA D ++G + + G+ S+GTG F ++ S E +
Sbjct: 1372 SVLQLASFEKTTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGS-FKLVKSSNCEKKA 1430
Query: 1268 LSK 1270
L K
Sbjct: 1431 LKK 1433
Score = 52 (23.4 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 565 VYISGGKLISA-EGSSWLRD-YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMT 621
V I G K++S S L D + ++F +++ Y + LC +L RG +
Sbjct: 647 VVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFS 706
Query: 622 VSLSDLYLASHSCSRKILMDEIFY 645
+ ++D+ A +K LM E Y
Sbjct: 707 IGINDVTPADELKQKKELMVEQAY 730
Score = 46 (21.3 bits), Expect = 1.9e-28, Sum P(4) = 1.9e-28
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 1272 VDVYNL--LSTPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLR 1329
+D+YN L T + + L+ K GL+S K + GD + L +L+ I
Sbjct: 737 IDLYNRGKLETQPGCNEEQTLEA-KIGGLLS-KVREEVGDVCIRELDSLNAPLIMATCGS 794
Query: 1330 KSWTYN 1335
K T N
Sbjct: 795 KGSTLN 800
Score = 41 (19.5 bits), Expect = 1.2e-38, Sum P(5) = 1.2e-38
Identities = 17/89 (19%), Positives = 39/89 (43%)
Query: 1257 FDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLG 1316
+++ Y+ + +L P + L+ + ++ +N+ ++ ++DK + ++ + G
Sbjct: 938 YNLTYNVDDASLL-PYQIEELVDSVLAPLENKLIRYDNLGNALNDKEKEQKIEYIDQNDG 996
Query: 1317 NLDFETISRGVLRKSWTYNDVLRLSNALK 1345
DF R L K +LR LK
Sbjct: 997 ERDFYKSIRDFLTKKSIRLALLREERGLK 1025
Score = 39 (18.8 bits), Expect = 1.9e-43, Sum P(6) = 1.9e-43
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 1038 AFCVTVMIVENFKRTSI--DLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASK 1093
AF + + +N SI DLETI + L+ + K+ I D K
Sbjct: 1162 AFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSVTGK 1219
Score = 38 (18.4 bits), Expect = 0.00021, Sum P(4) = 0.00021
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 992 LKEHSIIDSLYRQCKAARTELK 1013
L+ II + QCK R LK
Sbjct: 135 LRRMKIIKKIIEQCKKQRRCLK 156
Score = 37 (18.1 bits), Expect = 1.1e-15, Sum P(6) = 1.1e-15
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 333 DPNIKLKEIG-----IPCQVAERLQISERLNSWNWERLSVCI 369
D +KL EI I + + + I+ + W++ +LSV +
Sbjct: 281 DLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAM 322
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 320 (117.7 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 83/251 (33%), Positives = 138/251 (54%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA+ + E +N +N E+L C+ + + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPG 431
Query: 378 ELYVCRKGGLVR-------IRRI-DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ +KG ++ ++ I D L+ GDI+ R + DGDIVL NR PS+H S+++
Sbjct: 432 ANYIIKKGNPLKTMLKYGNLKFIADQLQEGDIVERHIEDGDIVLFNRQPSLHKLSILSHF 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 492 AKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 490 NLLSLGQDSLTAAHLLM-EDSVXXXXXXXXXXXXFC-PH-RF-LSPD-IFKISKDSVWSG 544
++ QD ++AA+LL +D+ P RF L P +FK +W+G
Sbjct: 551 PIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGPQTRFDLPPPAVFK--PQMLWTG 608
Query: 545 KQLFSMLLPPD 555
KQ+F++L+ P+
Sbjct: 609 KQVFNILMRPN 619
Score = 122 (48.0 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 44/140 (31%), Positives = 61/140 (43%)
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE 778
SK NS L M +GSKG+ + + Q +G Q + R
Sbjct: 787 SKYNSPLIMATSGSKGSSINVSQMVALVG-QQIIG--GQRVQDGFQDRTLPHFPKNARQP 843
Query: 779 CAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLC 836
+K + V NSF +GL P E H+++ R+ G ++RRLM + DL
Sbjct: 844 PSKGF-----VRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLS 898
Query: 837 TAYDGTVRNAYGNQIVQFSY 856
T YD TVRN+ IVQF Y
Sbjct: 899 TGYDDTVRNS-SQGIVQFQY 917
Score = 114 (45.2 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR- 106
R+G+ N T+ C +CG + C GHFG ++ H + + +L IC +C I
Sbjct: 68 RMGISNKTSTCQTCGGA-LQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILL 126
Query: 107 KERQKGAGSSRKEQPRV 123
E ++ A +PR+
Sbjct: 127 PEAERRAFLREMRRPRL 143
Score = 112 (44.5 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 33/123 (26%), Positives = 54/123 (43%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID R+ +N+ GI+A + + + D +I P H+ ++A+ ++ GE
Sbjct: 1290 IDGLRTRSNNVMETREVLGIEAARSTIIQEISEVMKDM--DIDPRHMQLLADVMTYKGEV 1347
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ GLA R S A F A AG D ++G + + GK S+
Sbjct: 1348 LGITRFGLAKMR-----DSVLQLASFEKTADHLFDAGGAGRTDLIEGVSECIIMGKTVSL 1402
Query: 1252 GTG 1254
GTG
Sbjct: 1403 GTG 1405
Score = 43 (20.2 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 986 IMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNK 1024
++K+TG I +R A+ + KI P ++ ++
Sbjct: 174 VVKKTGTSSLKITHDKFRAFNASTSAKKIPPPSKIVFDR 212
Score = 39 (18.8 bits), Expect = 2.7e-43, Sum P(5) = 2.7e-43
Identities = 7/43 (16%), Positives = 21/43 (48%)
Query: 587 NLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLY 628
N+F +++ + + + ++ W S G ++ ++D+Y
Sbjct: 677 NVFYIMLRDFGPAAAAEGMNRLSKLSARWFSNMGFSIGITDVY 719
Score = 37 (18.1 bits), Expect = 1.2e-35, Sum P(5) = 1.2e-35
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1384 PDIEVTYHPEHQNSRCFSLVRED 1406
PDI+V HP Q +R +++R D
Sbjct: 1248 PDIQVLGHP--QANR--AIIRTD 1266
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 368 (134.6 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 147/586 (25%), Positives = 265/586 (45%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 377 -GELYVCRK-GGLVRIR---RID--ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G + +R R AL+ G + R L D D VL NR PS+H S++A
Sbjct: 400 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 459
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++ QS +
Sbjct: 460 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNK 518
Query: 490 NLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH-RFLSPDIFKISKDSVWSGKQLF 548
++ + QD+L + + + P+ + P + +W+GKQL
Sbjct: 519 PVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLL 578
Query: 549 SMLLPPDFEYT-FPS-KDVYI---SGGKLISAEGSSWLRDYE------GNLFQYLIKRYR 597
S+ +P F +D+ +G ++ E + D + G L +++
Sbjct: 579 SLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKG 638
Query: 598 DKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
KV L+++ Q+V+ WL G ++ + D + + M ++ ++EA+
Sbjct: 639 PKVCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQT------MRDVNKTIQEAKQ--KV 690
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
Q++++D+ N L + E +L+ S+E S L+QA A + +++L
Sbjct: 691 QEIIIDAQHNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKDL--- 740
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
N++ M +GSKG+ + + Q S C+G Q R P + D
Sbjct: 741 -----NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFGDRSLPHFTKDDY 792
Query: 777 TECAK-----SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFF 831
+ +K SY+ + F + E I + + G + RRL+
Sbjct: 793 SPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET--------GYIQRRLVKA 844
Query: 832 MRDLCTAYDGTVRNAYGN--QIVQFSYNIEGTSTPTGEIGDQPVGS 875
+ D+ YDGT RN+ G+ Q + I+GT + P GS
Sbjct: 845 LEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIP-GS 889
Score = 167 (63.8 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 81/367 (22%), Positives = 151/367 (41%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
+ +PRLG + C +CG +D C GHFG I+ + H F++ I K S+C C
Sbjct: 54 LNDPRLGSIDRNFRCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCG 112
Query: 103 KTIRKERQKGAGSSRK-EQPR-----VCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVE 156
K + E + K P+ V C +++ + G
Sbjct: 113 KLLLDETNPAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNEDEMTDQPSRGGCG---H 169
Query: 157 IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFIL 216
+ + KL WG + ++N +P R++L+ ++ + K + P +
Sbjct: 170 PQPTIRRDGLKL----WGTWKQNKNYDDND-QPERRLLTPSEILNVFKHISPEDCYKMGF 224
Query: 217 SKD--AP---FLKCFPVTPNNHRVTEVPHAFSH-EKKLFFDNWTRHLKKMVDYRGRDIEL 270
++D P + PV P R + + + E L F +K ++ + + +
Sbjct: 225 NEDYARPEWMLITVLPVPPPPVRPSIAFNETARGEDDLTF-KLADIIKANINVQRLETDG 283
Query: 271 S--HLVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDISN-SSGLRW----IKDVVLGK 320
S H++ + + + H+ D A + QK I + + L+ ++ ++GK
Sbjct: 284 SPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGK 343
Query: 321 RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-GEL 379
R D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E G
Sbjct: 344 RVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAK 403
Query: 380 YVCRKGG 386
YV R G
Sbjct: 404 YVIRDTG 410
Score = 85 (35.0 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 27/139 (19%), Positives = 63/139 (45%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR++ ++ GI+A + + I+ G + H+ ++ + +++ G
Sbjct: 1324 VDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHL 1383
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + S + ++ F + AA A +D+ +G + + G++ +
Sbjct: 1384 MAITRHGI-----NRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVMLGQMAPL 1438
Query: 1252 GTGGHFDIIYSGEGRTLSK 1270
GTG FD++ + R L K
Sbjct: 1439 GTGS-FDLMV--DDRMLQK 1454
Score = 40 (19.1 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 24/114 (21%), Positives = 47/114 (41%)
Query: 853 QFSYNIEGTSTPTGEIGDQPVGS-LSACAISEAAYSALDQPISLLETSPLLNLKNVLECG 911
QF +I G + Q +G + ++ Y+ + S T + LK +L
Sbjct: 1053 QFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVS---SKNVTLGVPRLKEILNVA 1109
Query: 912 SKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSP 965
K+ M++FL ++ E + V++ +E L ++ S++ I Y P
Sbjct: 1110 --KNIKTPAMTVFLDPEVAS---DIEKAKI-VQSAIEHTTLKNVTSSTEIYYDP 1157
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 469 RVELTELVALDKQLINQQSGRNLL-SLGQD 497
R+EL LDKQL Q + + G+D
Sbjct: 1195 RLELDRAKMLDKQLTMAQVAEKISQNFGED 1224
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 368 (134.6 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 147/586 (25%), Positives = 265/586 (45%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 377 -GELYVCRK-GGLVRIR---RID--ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G + +R R AL+ G + R L D D VL NR PS+H S++A
Sbjct: 400 PGAKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHR 459
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++ QS +
Sbjct: 460 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNK 518
Query: 490 NLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH-RFLSPDIFKISKDSVWSGKQLF 548
++ + QD+L + + + P+ + P + +W+GKQL
Sbjct: 519 PVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLL 578
Query: 549 SMLLPPDFEYT-FPS-KDVYI---SGGKLISAEGSSWLRDYE------GNLFQYLIKRYR 597
S+ +P F +D+ +G ++ E + D + G L +++
Sbjct: 579 SLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKG 638
Query: 598 DKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
KV L+++ Q+V+ WL G ++ + D + + M ++ ++EA+
Sbjct: 639 PKVCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQT------MRDVNKTIQEAKQ--KV 690
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
Q++++D+ N L + E +L+ S+E S L+QA A + +++L
Sbjct: 691 QEIIIDAQHNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKDL--- 740
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
N++ M +GSKG+ + + Q S C+G Q R P + D
Sbjct: 741 -----NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFGDRSLPHFTKDDY 792
Query: 777 TECAK-----SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFF 831
+ +K SY+ + F + E I + + G + RRL+
Sbjct: 793 SPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET--------GYIQRRLVKA 844
Query: 832 MRDLCTAYDGTVRNAYGN--QIVQFSYNIEGTSTPTGEIGDQPVGS 875
+ D+ YDGT RN+ G+ Q + I+GT + P GS
Sbjct: 845 LEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIP-GS 889
Score = 167 (63.8 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 81/367 (22%), Positives = 151/367 (41%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
+ +PRLG + C +CG +D C GHFG I+ + H F++ I K S+C C
Sbjct: 54 LNDPRLGSIDRNFRCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCG 112
Query: 103 KTIRKERQKGAGSSRK-EQPR-----VCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVE 156
K + E + K P+ V C +++ + G
Sbjct: 113 KLLLDETNPAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNEDEMTDQPSRGGCG---H 169
Query: 157 IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFIL 216
+ + KL WG + ++N +P R++L+ ++ + K + P +
Sbjct: 170 PQPTIRRDGLKL----WGTWKQNKNYDDND-QPERRLLTPSEILNVFKHISPEDCYKMGF 224
Query: 217 SKD--AP---FLKCFPVTPNNHRVTEVPHAFSH-EKKLFFDNWTRHLKKMVDYRGRDIEL 270
++D P + PV P R + + + E L F +K ++ + + +
Sbjct: 225 NEDYARPEWMLITVLPVPPPPVRPSIAFNETARGEDDLTF-KLADIIKANINVQRLETDG 283
Query: 271 S--HLVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDISN-SSGLRW----IKDVVLGK 320
S H++ + + + H+ D A + QK I + + L+ ++ ++GK
Sbjct: 284 SPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGK 343
Query: 321 RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-GEL 379
R D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E G
Sbjct: 344 RVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAK 403
Query: 380 YVCRKGG 386
YV R G
Sbjct: 404 YVIRDTG 410
Score = 85 (35.0 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 27/139 (19%), Positives = 63/139 (45%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR++ ++ GI+A + + I+ G + H+ ++ + +++ G
Sbjct: 1324 VDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHL 1383
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + S + ++ F + AA A +D+ +G + + G++ +
Sbjct: 1384 MAITRHGI-----NRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVMLGQMAPL 1438
Query: 1252 GTGGHFDIIYSGEGRTLSK 1270
GTG FD++ + R L K
Sbjct: 1439 GTGS-FDLMV--DDRMLQK 1454
Score = 40 (19.1 bits), Expect = 5.0e-43, Sum P(4) = 5.0e-43
Identities = 24/114 (21%), Positives = 47/114 (41%)
Query: 853 QFSYNIEGTSTPTGEIGDQPVGS-LSACAISEAAYSALDQPISLLETSPLLNLKNVLECG 911
QF +I G + Q +G + ++ Y+ + S T + LK +L
Sbjct: 1053 QFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVS---SKNVTLGVPRLKEILNVA 1109
Query: 912 SKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSP 965
K+ M++FL ++ E + V++ +E L ++ S++ I Y P
Sbjct: 1110 --KNIKTPAMTVFLDPEVAS---DIEKAKI-VQSAIEHTTLKNVTSSTEIYYDP 1157
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 469 RVELTELVALDKQLINQQSGRNLL-SLGQD 497
R+EL LDKQL Q + + G+D
Sbjct: 1195 RLELDRAKMLDKQLTMAQVAEKISQNFGED 1224
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 306 (112.8 bits), Expect = 2.8e-41, Sum P(6) = 2.8e-41
Identities = 95/333 (28%), Positives = 157/333 (47%)
Query: 272 HLVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDI----SNSSGLRW-IKDVVLGKRND 323
H+V++ + + H+ D A + QK N + S G ++ ++GKR D
Sbjct: 301 HVVREFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVD 360
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-GELYVC 382
R V+TGDPN+ L E+G+P +A L E + +N E+L + E G Y+
Sbjct: 361 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPGARYIV 420
Query: 383 RKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
R G L +R +L G + R L DGD++L NR PS+H S++ V+V+P S
Sbjct: 421 RDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESMMGHRVRVMPYS 480
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N SP++ DFDGD ++ ++PQ+ +R EL +L + + +++ Q L+ + Q
Sbjct: 481 TF-RLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVPQNIVSPQRNGPLMGIVQ 539
Query: 497 DSLTAAHLLMEDSVXXXXXXXXXXXXFCPHR---FLSPDIFKISKDSVWSGKQLFSMLLP 553
D+L + + V + P P IFK W+GKQ+ SM+ P
Sbjct: 540 DTLCGIYKICRRDVFLTKEQVMNIMMWVPDWDGVIPPPAIFKPRPR--WTGKQMISMVFP 597
Query: 554 P-------DFEYTFPSKDVY--ISGGKLISAEG 577
D + PS + Y + G ++ EG
Sbjct: 598 SGLNLMRTDSKGAAPSSEKYSPLQDGNVLIHEG 630
Score = 144 (55.7 bits), Expect = 2.8e-41, Sum P(6) = 2.8e-41
Identities = 42/145 (28%), Positives = 73/145 (50%)
Query: 720 KD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLRAGDNT 777
KD N+ + M ++GSKG+++ + Q + +G Q ++F F + D +
Sbjct: 758 KDLNNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFKYR----TLPHFTKDDYS 813
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDL 835
++ + VENS+L GL P E F H++ R+ G + R+L+ + ++
Sbjct: 814 PESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEV 868
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEG 860
YDGTVRN+ G+ I+QF Y +G
Sbjct: 869 MVKYDGTVRNSLGD-IIQFIYGEDG 892
Score = 116 (45.9 bits), Expect = 2.8e-41, Sum P(6) = 2.8e-41
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIR 106
I+
Sbjct: 114 KIK 116
Score = 83 (34.3 bits), Expect = 2.8e-41, Sum P(6) = 2.8e-41
Identities = 27/128 (21%), Positives = 55/128 (42%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR++ + +GI+A L +S G + HL ++ + ++ G
Sbjct: 1348 VDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVNHRHLALLVDVMTMRGYL 1407
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ G+ + + + ++ F ++AA G +D+ +G + L G++
Sbjct: 1408 TPVTRHGI-----NRADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENLILGQMAPA 1462
Query: 1252 GTGGHFDI 1259
GTG FDI
Sbjct: 1463 GTG-EFDI 1469
Score = 48 (22.0 bits), Expect = 2.8e-41, Sum P(6) = 2.8e-41
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 586 GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSD 626
G + + Y D + F AQ ++ WL G ++ + D
Sbjct: 647 GGVIHIIFNEYGADAAVAFFNGAQAIVNYWLLHNGFSIGIGD 688
Score = 41 (19.5 bits), Expect = 2.8e-41, Sum P(6) = 2.8e-41
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 931 KRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSP 965
+R H E GA ++++ +E L I + I Y P
Sbjct: 1143 ERAHDKE-GAKQLRSAVEYTNLRSITEATEIYYDP 1176
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 292 (107.8 bits), Expect = 4.3e-41, Sum P(5) = 4.3e-41
Identities = 77/253 (30%), Positives = 128/253 (50%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+++ ++G+P VA L E +N+ N E++ + I+ + G
Sbjct: 354 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 413
Query: 378 ELYVCRK--GG--LVRIRRIDAL----ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ K G L++ + D L +GD I R L D D+VL NR PS+H S+++
Sbjct: 414 ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHR 473
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV+P N C+P++ DFDGD ++ ++PQ A+ E +EL+ + LI +SG
Sbjct: 474 AKVMP-GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGE 532
Query: 490 NLLSLGQDSLTAAHLLM-EDSVXXXXXXXXXXXXFCPHRFLSPDIFKISKDSV------W 542
L++ QD +T +LL +D+ +I ++ W
Sbjct: 533 PLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELW 592
Query: 543 SGKQLFSMLLPPD 555
+GKQL +++ PD
Sbjct: 593 TGKQLIELIIRPD 605
Score = 167 (63.8 bits), Expect = 4.3e-41, Sum P(5) = 4.3e-41
Identities = 59/231 (25%), Positives = 100/231 (43%)
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE 778
SK N+ L M GSKG+ + + Q C+G Q A R P + T
Sbjct: 768 SKYNAPLTMAVCGSKGSFINISQMIACVGQQ---AISGHRPPDGFEERSLPHFERKKKTP 824
Query: 779 CAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLC 836
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC
Sbjct: 825 EAKGF-----VANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLC 879
Query: 837 TAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS-ACAISEAAYSALDQPISL 895
+YDGTVR++ G+ +++F + +G E D V + ++ + +QPI +
Sbjct: 880 ASYDGTVRSSVGD-VIEFVFGEDGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPV 938
Query: 896 LETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNH 946
+ +L + + K + +S +++ K+ ++ G NH
Sbjct: 939 DKLDEVLKAEIQKKFKGKYVHFADKLSEYITQTEIKKSKKWQNGKAHCGNH 989
Score = 105 (42.0 bits), Expect = 4.3e-41, Sum P(5) = 4.3e-41
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P++G+ T CS+CG C GHFG+ + H F +LL IC C +I
Sbjct: 58 DPKMGVSTKTGTCSTCGL-GLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSI 116
Score = 71 (30.1 bits), Expect = 4.3e-41, Sum P(5) = 4.3e-41
Identities = 23/105 (21%), Positives = 45/105 (42%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A + + + + G + H++++A+ ++ GE +G+ GL +
Sbjct: 1273 GIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRNGLVKMK-----D 1327
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
S + A F +AA D + G + + G +VGTG
Sbjct: 1328 SVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTG 1372
Score = 51 (23.0 bits), Expect = 4.3e-41, Sum P(5) = 4.3e-41
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL 627
N+F L++ Y D +D ++ + +LS RG ++ + D+
Sbjct: 658 NIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDV 699
Score = 43 (20.2 bits), Expect = 8.2e-26, Sum P(4) = 8.2e-26
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 1402 LVREDGSIEDFSYHKC 1417
L+RE G + D Y KC
Sbjct: 705 LLREKGQLVDNGYSKC 720
Score = 38 (18.4 bits), Expect = 2.8e-34, Sum P(5) = 2.8e-34
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 77 KFPFTILHPYFLSDIAKLLNSI 98
K FT+L+P F + KL ++I
Sbjct: 207 KMKFTLLNPLF---VQKLFSNI 225
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 310 (114.2 bits), Expect = 9.9e-41, Sum P(4) = 9.9e-41
Identities = 76/251 (30%), Positives = 134/251 (53%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +R+ +
Sbjct: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRG 401
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R L D D+V+ NR P++H S+
Sbjct: 402 NSQYPGAKYIVRDNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSM 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 462 MGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITP 520
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V F P + P I K +W
Sbjct: 521 QANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK--PRPLW 578
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 579 TGKQIFSLIIP 589
Score = 151 (58.2 bits), Expect = 9.9e-41, Sum P(4) = 9.9e-41
Identities = 47/158 (29%), Positives = 71/158 (44%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N+L AM +GSKG+ + + Q C+G Q+ R P+ D ++
Sbjct: 756 NNLKAMVVSGSKGSNINISQVIACVGQQNVEGK---RIPYGFRKRTLPHFIKDDYGPESR 812
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAY 839
+ VENS+L GL P E + H++ R+ G + RRL+ M + Y
Sbjct: 813 GF-----VENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNY 867
Query: 840 DGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
DGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 868 DGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
Score = 104 (41.7 bits), Expect = 9.9e-41, Sum P(4) = 9.9e-41
Identities = 33/125 (26%), Positives = 55/125 (44%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR G+ + T+ C +C A + C GHFG I + H F++ K+L +C C +
Sbjct: 55 DPRQGVIDRTSRCQTC-AGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKM 113
Query: 106 RKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN 165
P++ + +++ Q PR R GKT D L+K+N
Sbjct: 114 LVS---------PHNPKIKEIVMKSRGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKEN 162
Query: 166 KKLPD 170
++ PD
Sbjct: 163 QQ-PD 166
Score = 77 (32.2 bits), Expect = 9.9e-41, Sum P(4) = 9.9e-41
Identities = 26/133 (19%), Positives = 57/133 (42%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + + + + G + HL ++ + ++A G
Sbjct: 1344 VDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHL 1403
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + ++ F + AA D ++G + + G++P +
Sbjct: 1404 MAITRHGINRQD-----TGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKM 1458
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1459 GTGC-FDLLLDAE 1470
Score = 39 (18.8 bits), Expect = 3.3e-29, Sum P(4) = 3.3e-29
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 851 IVQFSYNIEGTSTPTGEIG---DQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNV 907
++Q ++N+E TP + + V + A + SA SL E + NLK +
Sbjct: 708 VIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKK---SLTEYN---NLKAM 761
Query: 908 LECGSKKSNAD--QTMSLF-LSNKLGKR-RHGF 936
+ GSK SN + Q ++ N GKR +GF
Sbjct: 762 VVSGSKGSNINISQVIACVGQQNVEGKRIPYGF 794
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 276 (102.2 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 77/254 (30%), Positives = 129/254 (50%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------S 370
GKR D R V++ DPN+++ E+ +P VA+ L E++N N E + +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPG 417
Query: 371 FRLLEKGELYVCR--KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+++ + + R K G R + L+ GD++ R + DGDIVL NR PS+H S++A
Sbjct: 418 ANFIQQRHMQMKRFLKYGN-REKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMAH 476
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 477 IARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 489 RNLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPHRF----LS---PDIFKISKDS 540
L++ QD LT A+LL ++D+ + +S P I K +
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILVGKDEKIKISLPHPAILKPIR-- 593
Query: 541 VWSGKQLFSMLLPP 554
+W+GKQ+FS++L P
Sbjct: 594 LWTGKQIFSLILKP 607
Score = 178 (67.7 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 65/227 (28%), Positives = 98/227 (43%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P + +
Sbjct: 773 KSNSPLIMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFQKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V +SF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQP-IS-- 894
YD TVR++ G+ I+QF Y +G E D+P+ A YS +P +S
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYSCTGEPALSRN 943
Query: 895 --LLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYG 939
LL + ++ K+ L C + +S K+ K R +YG
Sbjct: 944 ELLLTSDSIMKRKDFLCCKDTFLEEIRKFIKTVSEKVKKTRD--KYG 988
Score = 90 (36.7 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A + ++ + + G +I H++++A+ +S GE +G+ GLA ++
Sbjct: 1259 GIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKE----- 1313
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
S + A F AA G D++ G + + G ++GTG
Sbjct: 1314 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Score = 89 (36.4 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + R+G C +CG K+ C GH+G++ H + I +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCS 113
Query: 104 TI 105
I
Sbjct: 114 HI 115
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 296 (109.3 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
Identities = 73/249 (29%), Positives = 131/249 (52%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ + E+ +P +VA+ L E++ +N +L + ++ + G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Query: 378 ELYVCRKGGLVR--IRRIDA------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++ R +R D L++GD++ R L DGD+VL NR PS+H S+++
Sbjct: 430 ANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 490 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 548
Query: 490 NLLSLGQDSLTAAHLLM-EDSVXXXXXXXXXXXXFCP--HRFLSPDIFKISKDSVWSGKQ 546
+++ QD +T ++L+ +DS F P + +W+GKQ
Sbjct: 549 PIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYYLWTGKQ 608
Query: 547 LFSMLLPPD 555
+FS+L+ P+
Sbjct: 609 VFSLLIKPN 617
Score = 142 (55.0 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
Identities = 48/154 (31%), Positives = 69/154 (44%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N+ L M GSKG+ L + Q +G Q ++ R P + T +K
Sbjct: 789 NAPLIMATCGSKGSTLNVSQMVAVVG-QQIIS--GNRVPDGFQDRSLPHFPKNSKTPQSK 845
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAY 839
+ V NSF +GL+P E H+++ R+ G ++RRLM + DL Y
Sbjct: 846 GF-----VRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQY 900
Query: 840 DGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
D TVR + N IVQF+Y +G E QPV
Sbjct: 901 DNTVRTS-ANGIVQFTYGGDGLDPLEMEGNAQPV 933
Score = 107 (42.7 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILH-P 85
D EK++ GA+ +P++G+ + + EC++C + +C GHFG +K + H
Sbjct: 41 DLEKDRAPKAN-GAL----DPKMGVSSSSLECATCHG-NLASCHGHFGHLKLALPVFHIG 94
Query: 86 YFLSDIAKLLNSICPKCKTI 105
YF + I ++L IC C I
Sbjct: 95 YFKATI-QILQGICKNCSAI 113
Score = 88 (36.0 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
Identities = 28/131 (21%), Positives = 58/131 (44%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D + +R+ +++ GI+A + + +S+ G ++ P H+ ++ + ++ G
Sbjct: 1307 DGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKG 1366
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GL+ R S A F AA D ++G + + G+
Sbjct: 1367 EVLGITRFGLSKMR-----DSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTM 1421
Query: 1250 SVGTGGHFDII 1260
S+GTG F ++
Sbjct: 1422 SIGTGS-FKVV 1431
Score = 45 (20.9 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 114 GSSR---KEQPRVCKYCVRNPAQWYPRMRFKLSSK--DLSGKTAIIVEIDEKLSKKNKKL 168
GSS K +P + +C R + R R LS K D SG+T ++ D LS +
Sbjct: 339 GSSNGGGKVKP-IRGFCQRLKGK-QGRFRGNLSGKRVDFSGRT--VISPDPNLSIDEVAV 394
Query: 169 PD 170
PD
Sbjct: 395 PD 396
Score = 45 (20.9 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 1010 TELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLK 1069
++LKI D+ I KD +IN+ E A ++ E + D+ + L
Sbjct: 1213 SKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN---DVFYRMQQLRRALPD 1269
Query: 1070 TVVKGFREIKKVDILWKDKQK 1090
VVKG +I + I +D K
Sbjct: 1270 VVVKGLPDISRAVINIRDDGK 1290
Score = 42 (19.8 bits), Expect = 2.8e-40, Sum P(7) = 2.8e-40
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 565 VYISGGKLISAE-GSSWLRD-YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMT 621
V I G +++S S L D + ++F +++ Y + LC +L RG +
Sbjct: 652 VIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFS 711
Query: 622 VSLSDLYLASHSCSRKILMDEIFY 645
+ ++D+ A +K + EI Y
Sbjct: 712 IGINDVTPADDLKQKKEELVEIAY 735
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 300 (110.7 bits), Expect = 8.4e-40, Sum P(5) = 8.4e-40
Identities = 113/470 (24%), Positives = 201/470 (42%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR D R V+TGD NI L E+G+P +A L E + N +RL ++
Sbjct: 354 LMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEH 413
Query: 376 KGELYVCRKGGL-VRIRRID-----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G Y+ R G + +R + LE G + R L GD ++ NR PS+H S++
Sbjct: 414 PGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQ 473
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 474 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNS 532
Query: 490 NLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH-RFLSPDIFKISKDSVWSGKQLF 548
L+ + QD+L + L V + P + P + W+GKQ+
Sbjct: 533 PLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQII 592
Query: 549 SMLLPPDFEYTF------PSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRD- 598
SM++P DF T P D + I G+L+ + G +
Sbjct: 593 SMVIP-DFVTTHQGGDWNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHICYNEQGPA 651
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ-DTCNFQ 657
+ + FL Q V+ WL G ++ + D + + +++I + E + +
Sbjct: 652 RAMAFLNGCQRVVNYWLLHNGHSIGIGD------TIPDPVTIEKIQAHINEQKAEVAELT 705
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY 717
L + + L E+ S + L+ ++++ ++ S+ DI
Sbjct: 706 DLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLK-------DI------- 751
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PH 761
N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 752 ----NNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH 797
Score = 152 (58.6 bits), Expect = 8.4e-40, Sum P(5) = 8.4e-40
Identities = 45/144 (31%), Positives = 69/144 (47%)
Query: 720 KD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE 778
KD N+ + M ++GSKG+ + + Q + +G Q R P D +
Sbjct: 749 KDINNAVTMSRSGSKGSSINISQMTALVGQQIVEGK---RIPFGFKYRTLPHFTKDDFSP 805
Query: 779 CAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLC 836
A+ + VENS+L GL P E F H++ R+ G + RRL+ + D+
Sbjct: 806 EARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVA 860
Query: 837 TAYDGTVRNAYGNQIVQFSYNIEG 860
YDGTVRN+ G+ I+QF Y +G
Sbjct: 861 AKYDGTVRNSLGD-IIQFIYGEDG 883
Score = 109 (43.4 bits), Expect = 8.4e-40, Sum P(5) = 8.4e-40
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C D C GHFG I+ + HP F++ K+L +C +C
Sbjct: 55 LNDPLLGTTDRQYKCKTCN-NDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCS 113
Query: 104 TI 105
+
Sbjct: 114 KL 115
Score = 80 (33.2 bits), Expect = 8.4e-40, Sum P(5) = 8.4e-40
Identities = 24/132 (18%), Positives = 59/132 (44%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D R+ +++ GI+A L L ++ G + HL ++ + ++
Sbjct: 1341 VDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYR 1400
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + G+ + + + ++ F ++AA G +D+ +G + + G++
Sbjct: 1401 GSIAAVTRHGI-----NRADTGALMRCSFEETVEILLEAAAIGELDDCRGISENVMLGQL 1455
Query: 1249 PSVGTGGHFDII 1260
+GTG F+++
Sbjct: 1456 APMGTGA-FEVL 1466
Score = 42 (19.8 bits), Expect = 6.4e-36, Sum P(5) = 6.4e-36
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 860 GTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSP 900
G+ TPTG + GSL + ++ +P S TSP
Sbjct: 1532 GSDTPTGFATEYGGGSLGS--MNPYGSGTSPRPTSPFSTSP 1570
Score = 38 (18.4 bits), Expect = 8.4e-40, Sum P(5) = 8.4e-40
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 232 NHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE 269
NH TE + + DN + + + GR I+
Sbjct: 300 NHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIK 337
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 274 (101.5 bits), Expect = 2.1e-39, Sum P(4) = 2.1e-39
Identities = 76/253 (30%), Positives = 126/253 (49%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L + + + G
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ ++ + R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 478 ARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPH-------RFLSPDIFKISKDSV 541
L++ QD LT A+LL ++D+ R P I K ++
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILK--PVTL 594
Query: 542 WSGKQLFSMLLPP 554
W+GKQ+FS++L P
Sbjct: 595 WTGKQIFSVILRP 607
Score = 176 (67.0 bits), Expect = 2.1e-39, Sum P(4) = 2.1e-39
Identities = 55/192 (28%), Positives = 87/192 (45%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLE 897
YD TVR++ G+ I+QF Y +G E D+P+ +A + +P +L +
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCRSEP-ALSK 942
Query: 898 TSPLLNLKNVLE 909
LL+ +++++
Sbjct: 943 NELLLSAESIMK 954
Score = 87 (35.7 bits), Expect = 2.1e-39, Sum P(4) = 2.1e-39
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC 112
Score = 87 (35.7 bits), Expect = 2.1e-39, Sum P(4) = 2.1e-39
Identities = 31/137 (22%), Positives = 62/137 (45%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
TR+ +N GI+A + ++ + + G +I H++++++ ++ GE +G+
Sbjct: 1244 TRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGI 1303
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA ++ S + A F AA G D++ G + + G ++GTG
Sbjct: 1304 TRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1255 GHFDIIYSGEGRTLSKP 1271
F +++ R S P
Sbjct: 1359 -LFKLLHKAN-RDPSPP 1373
Score = 40 (19.1 bits), Expect = 1.4e-34, Sum P(4) = 1.4e-34
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
+D+AK ++ IC K+ + RQ+
Sbjct: 9 TDVAKKISHICFGMKSAEEMRQQ 31
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 275 (101.9 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 75/252 (29%), Positives = 126/252 (50%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L + + + G
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ ++ + R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 478 AKVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPHR------FLSPDIFKISKDSVW 542
L++ QD LT A+LL ++D+ + L P + ++W
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTI-LKPVTLW 595
Query: 543 SGKQLFSMLLPP 554
+GKQ+FS++L P
Sbjct: 596 TGKQIFSVILRP 607
Score = 172 (65.6 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 54/192 (28%), Positives = 86/192 (44%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLE 897
YD TVR++ G+ I+QF Y +G E D+P+ +A + +P +L +
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCQSEP-ALSK 942
Query: 898 TSPLLNLKNVLE 909
+L +++++
Sbjct: 943 NELVLTTESIMK 954
Score = 89 (36.4 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 31/137 (22%), Positives = 63/137 (45%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
TR+ +N GI+A + ++ + + G +I H++++++ ++ GE +G+
Sbjct: 1244 TRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGI 1303
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA ++ S + A F AA G D++ G + + G ++GTG
Sbjct: 1304 TRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1255 GHFDIIYSGEGRTLSKP 1271
F +++ + R S P
Sbjct: 1359 -LFKLLHKAD-RDPSPP 1373
Score = 87 (35.7 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC 112
Score = 38 (18.4 bits), Expect = 2.9e-34, Sum P(4) = 2.9e-34
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
+D+AK ++ IC K+ + RQ+
Sbjct: 9 TDVAKKISHICFGMKSPEEMRQQ 31
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 274 (101.5 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 80/254 (31%), Positives = 126/254 (49%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWN---WERL-----SVCIS 370
GKR D R V++ DPN+++ E+ +P VA+ L E++N N +L V
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Query: 371 FRLLEKGELYVCR--KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+++ + R K G R + L+ GDI+ R L DGDIVL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAH 476
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 477 IARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 489 RNLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPH-------RFLSPDIFKISKDS 540
L++ QD LT A+LL ++D+ R P I K +
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILK--PVT 593
Query: 541 VWSGKQLFSMLLPP 554
+W+GKQ+FS++L P
Sbjct: 594 LWTGKQVFSLILKP 607
Score = 176 (67.0 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 67/229 (29%), Positives = 97/229 (42%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 773 KSNSPLIMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPI---- 893
YD TVR++ G+ I+QF Y +G E D+P+ A Y +P
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKN 943
Query: 894 SLLETSPLLNLKNVLECGSKKSNADQTMSLFL---SNKLGKRRHGFEYG 939
L+ TS + KN C + + Q + F+ S K+ K R +YG
Sbjct: 944 ELVLTSESIMKKNEFLCC--RDSFLQEIKKFIKGVSEKIKKTRD--KYG 988
Score = 88 (36.0 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTC 112
Score = 85 (35.0 bits), Expect = 2.6e-39, Sum P(4) = 2.6e-39
Identities = 27/130 (20%), Positives = 60/130 (46%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
T++ +N GI+A + ++ + + G +I H++++++ ++ GE +G+
Sbjct: 1244 TKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGI 1303
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA ++ S + A F AA G D++ G + + G ++GTG
Sbjct: 1304 TRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1255 GHFDIIYSGE 1264
F +++ +
Sbjct: 1359 -LFKLLHKAD 1367
Score = 41 (19.5 bits), Expect = 1.8e-34, Sum P(4) = 1.8e-34
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
SD+AK ++ IC K+ + RQ+
Sbjct: 9 SDVAKKISHICFGMKSPEEMRQQ 31
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 277 (102.6 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 76/256 (29%), Positives = 128/256 (50%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L + + + G
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPG 417
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ ++ + R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 478 ARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPH-------RFLSPDIFKISKDSV 541
L++ QD LT A+LL ++D+ R P I K ++
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILK--PVTL 594
Query: 542 WSGKQLFSMLLPPDFE 557
W+GKQ+FS++L P ++
Sbjct: 595 WTGKQVFSVILRPSYD 610
Score = 175 (66.7 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 55/192 (28%), Positives = 86/192 (44%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLE 897
YD TVR++ G+ I+QF Y +G E D+P+ +A + +P +L +
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCQSEP-ALSK 942
Query: 898 TSPLLNLKNVLE 909
LL +++++
Sbjct: 943 NELLLTTESIMK 954
Score = 87 (35.7 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC 112
Score = 83 (34.3 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 28/122 (22%), Positives = 57/122 (46%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A + ++ + + G +I H++++++ ++ GE +G+ GLA ++
Sbjct: 1259 GIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKE----- 1313
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLS 1269
S + A F AA G D++ G + + G ++GTG F +++ R S
Sbjct: 1314 SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG-LFKLLHKAN-RDPS 1371
Query: 1270 KP 1271
P
Sbjct: 1372 PP 1373
Score = 40 (19.1 bits), Expect = 2.2e-34, Sum P(4) = 2.2e-34
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
+D+AK ++ IC K+ + RQ+
Sbjct: 9 TDVAKKISHICFGMKSAEEMRQQ 31
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 271 (100.5 bits), Expect = 5.5e-39, Sum P(4) = 5.5e-39
Identities = 80/254 (31%), Positives = 125/254 (49%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWN---WERL-----SVCIS 370
GKR D R V++ DPN+++ E+ +P VA+ L E++N N +L V
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Query: 371 FRLLEKGELYVCR--KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+++ + R K G R + L+ GDI+ R L DGDIVL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAH 476
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 477 IARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 489 RNLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPH-------RFLSPDIFKISKDS 540
L++ QD LT A+LL ++D+ R P I K +
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILK--PVT 593
Query: 541 VWSGKQLFSMLLPP 554
+W+GKQ+FS +L P
Sbjct: 594 LWTGKQVFSSILKP 607
Score = 176 (67.0 bits), Expect = 5.5e-39, Sum P(4) = 5.5e-39
Identities = 67/229 (29%), Positives = 97/229 (42%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 773 KSNSPLIMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPI---- 893
YD TVR++ G+ I+QF Y +G E D+P+ A Y +P
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIRAVYPCRSEPALSKN 943
Query: 894 SLLETSPLLNLKNVLECGSKKSNADQTMSLFL---SNKLGKRRHGFEYG 939
L+ TS + KN C + + Q + F+ S K+ K R +YG
Sbjct: 944 ELVLTSESIMKKNEFLCC--RDSFLQEIKKFIKGVSEKIKKTRD--KYG 988
Score = 88 (36.0 bits), Expect = 5.5e-39, Sum P(4) = 5.5e-39
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTC 112
Score = 85 (35.0 bits), Expect = 5.5e-39, Sum P(4) = 5.5e-39
Identities = 27/130 (20%), Positives = 60/130 (46%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
T++ +N GI+A + ++ + + G +I H++++++ ++ GE +G+
Sbjct: 1244 TKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGI 1303
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA ++ S + A F AA G D++ G + + G ++GTG
Sbjct: 1304 TRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1255 GHFDIIYSGE 1264
F +++ +
Sbjct: 1359 -LFKLLHKAD 1367
Score = 41 (19.5 bits), Expect = 3.8e-34, Sum P(4) = 3.8e-34
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
SD+AK ++ IC K+ + RQ+
Sbjct: 9 SDVAKKISHICFGMKSPEEMRQQ 31
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 273 (101.2 bits), Expect = 6.9e-39, Sum P(4) = 6.9e-39
Identities = 78/254 (30%), Positives = 125/254 (49%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-------- 370
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Query: 371 FRLLEKGELYVCR--KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+++ + R K G R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGN-REKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 477 LARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 489 RNLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPH-------RFLSPDIFKISKDS 540
L++ QD LT A+LL ++D+ R P I K +
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILK--PVT 593
Query: 541 VWSGKQLFSMLLPP 554
+W+GKQ+FS++L P
Sbjct: 594 LWTGKQIFSVILRP 607
Score = 172 (65.6 bits), Expect = 6.9e-39, Sum P(4) = 6.9e-39
Identities = 54/192 (28%), Positives = 86/192 (44%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLE 897
YD TVR++ G+ I+QF Y +G E D+P+ +A + +P +L +
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCPSEP-ALSK 942
Query: 898 TSPLLNLKNVLE 909
+L +++++
Sbjct: 943 NELILTTESIMK 954
Score = 87 (35.7 bits), Expect = 6.9e-39, Sum P(4) = 6.9e-39
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC 112
Score = 87 (35.7 bits), Expect = 6.9e-39, Sum P(4) = 6.9e-39
Identities = 28/130 (21%), Positives = 60/130 (46%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
TR+ +N GI+A + ++ + + G +I H++++++ ++ GE +G+
Sbjct: 1244 TRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGI 1303
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA ++ S + A F AA G D++ G + + G ++GTG
Sbjct: 1304 TRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1358
Query: 1255 GHFDIIYSGE 1264
F +++ +
Sbjct: 1359 -LFKLLHKAD 1367
Score = 38 (18.4 bits), Expect = 7.6e-34, Sum P(4) = 7.6e-34
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
+D+AK ++ IC K+ + RQ+
Sbjct: 9 TDVAKKISHICFGMKSPEEMRQQ 31
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 280 (103.6 bits), Expect = 1.4e-38, Sum P(4) = 1.4e-38
Identities = 79/254 (31%), Positives = 126/254 (49%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------S 370
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 417
Query: 371 FRLLEKGELYVCR--KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+++ + + R K G R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHMQMKRFLKYGN-REKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAH 476
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
KV P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 477 LAKVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 489 RNLLSLGQDSLTAAHLL-MEDSVXXXXXXXXXXXXFCPH-------RFLSPDIFKISKDS 540
L++ QD LT A+LL ++D+ R P I K +
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILK--PVT 593
Query: 541 VWSGKQLFSMLLPP 554
+W+GKQ+FS++L P
Sbjct: 594 LWTGKQIFSVILRP 607
Score = 175 (66.7 bits), Expect = 1.4e-38, Sum P(4) = 1.4e-38
Identities = 65/227 (28%), Positives = 94/227 (41%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 773 KSNSPLTMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 829
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 830 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 884
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYS-----ALDQP 892
YD TVR++ G+ I+QF Y +G E D+P+ +A Y AL +
Sbjct: 885 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYPCQSERALSKN 943
Query: 893 ISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYG 939
L T ++ L C +T +S K+ K R +YG
Sbjct: 944 ELTLTTEAIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKTRD--KYG 988
Score = 89 (36.4 bits), Expect = 1.4e-38, Sum P(4) = 1.4e-38
Identities = 36/158 (22%), Positives = 65/158 (41%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCC 113
Query: 104 TI---RKERQKGAGSSRKE-----QPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV 155
I ++E+Q+ ++ Q R K + + + + + K ++
Sbjct: 114 HIMLSQEEKQQFLDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLK 173
Query: 156 EIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKV 193
I EK K NKK+ D + Q E +++ N++V
Sbjct: 174 IIHEKY-KTNKKVVDP---IVSNFLQSFETAIEHNKEV 207
Score = 71 (30.1 bits), Expect = 1.4e-38, Sum P(4) = 1.4e-38
Identities = 23/104 (22%), Positives = 47/104 (45%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
TR+ +N GI+A + ++ + + G +I H++++++ ++ GE +G+
Sbjct: 1244 TRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGI 1303
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQG 1238
GLA ++ S + A F AA G D++ G
Sbjct: 1304 TRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCG 1342
Score = 38 (18.4 bits), Expect = 2.4e-33, Sum P(4) = 2.4e-33
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
+D+AK ++ IC K+ + RQ+
Sbjct: 9 TDVAKKISHICFGMKSPEEMRQQ 31
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 266 (98.7 bits), Expect = 2.3e-38, Sum P(4) = 2.3e-38
Identities = 76/255 (29%), Positives = 127/255 (49%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L + + + G
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ ++ + R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 478 AKVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 490 NLLSLGQDSLTA---AHLL-MEDSVXXXXXXXXXXXXFCPHR------FLSPDIFKISKD 539
L++ QD LTA A+LL ++D+ + L P +
Sbjct: 537 PLIAAIQDFLTAFVGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVHLPPPTI-LKPV 595
Query: 540 SVWSGKQLFSMLLPP 554
++W+GKQ+FS++L P
Sbjct: 596 TLWTGKQIFSVILRP 610
Score = 172 (65.6 bits), Expect = 2.3e-38, Sum P(4) = 2.3e-38
Identities = 54/192 (28%), Positives = 86/192 (44%)
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K NS L M GSKG+ + + Q C+G Q A R P +
Sbjct: 776 KSNSPLTMALCGSKGSFINISQMIACVGQQ---AISGSRVPDGFENRSLPHFEKHSKLPA 832
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
AK + V NSF +GL P E F H++ R+ G + RRL+ + DLC+
Sbjct: 833 AKGF-----VANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCS 887
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLE 897
YD TVR++ G+ I+QF Y +G E D+P+ +A + +P +L +
Sbjct: 888 QYDLTVRSSTGD-IIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVFPCQSEP-ALSK 945
Query: 898 TSPLLNLKNVLE 909
+L +++++
Sbjct: 946 NELVLTTESIMK 957
Score = 89 (36.4 bits), Expect = 2.3e-38, Sum P(4) = 2.3e-38
Identities = 31/137 (22%), Positives = 63/137 (45%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
TR+ +N GI+A + ++ + + G +I H++++++ ++ GE +G+
Sbjct: 1230 TRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGI 1289
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA ++ S + A F AA G D++ G + + G ++GTG
Sbjct: 1290 TRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTG 1344
Query: 1255 GHFDIIYSGEGRTLSKP 1271
F +++ + R S P
Sbjct: 1345 -LFKLLHKAD-RDPSPP 1359
Score = 87 (35.7 bits), Expect = 2.3e-38, Sum P(4) = 2.3e-38
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC 112
Score = 38 (18.4 bits), Expect = 2.5e-33, Sum P(4) = 2.5e-33
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 89 SDIAKLLNSICPKCKTIRKERQK 111
+D+AK ++ IC K+ + RQ+
Sbjct: 9 TDVAKKISHICFGMKSPEEMRQQ 31
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 297 (109.6 bits), Expect = 4.2e-38, Sum P(6) = 4.2e-38
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 529 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 586
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 587 TGKQIFSLIIP 597
Score = 130 (50.8 bits), Expect = 4.2e-38, Sum P(6) = 4.2e-38
Identities = 44/150 (29%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +G+KG+ + + Q +G Q+ + F F H
Sbjct: 756 AQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 811
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 812 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 867 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 100 (40.3 bits), Expect = 4.2e-38, Sum P(6) = 4.2e-38
Identities = 45/201 (22%), Positives = 84/201 (41%)
Query: 1067 LLKTVVKGFREIKKVDI---LWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMN 1123
L ++G +I KV +K+K + +HD SF + + + + SL L
Sbjct: 1293 LTDMTLQGIEQISKVTCHLPQTDNKKKITMTHDASFKKYFYLFQL--ETDGVSLMRVLSE 1350
Query: 1124 DCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVAN 1183
D +D R+ ++I GI+A + L IS G + HL ++ +
Sbjct: 1351 K-----D-VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCD 1404
Query: 1184 TLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDAL 1243
T++ G + + G+ Q + P ++ F ++AA G D ++G + +
Sbjct: 1405 TMTCRGHLMAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENI 1459
Query: 1244 GWGKVPSVGTGGHFDIIYSGE 1264
G++ GTG FD++ E
Sbjct: 1460 MLGQLAPAGTGC-FDLLLDAE 1479
Score = 99 (39.9 bits), Expect = 4.2e-38, Sum P(6) = 4.2e-38
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 43 (20.2 bits), Expect = 4.2e-38, Sum P(6) = 4.2e-38
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G T+ + D
Sbjct: 673 QTVINNWLLIEGHTIGIGD 691
Score = 43 (20.2 bits), Expect = 2.4e-32, Sum P(6) = 2.4e-32
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI 1366
+LR W + ++ L LH + + + E K VI
Sbjct: 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVI 1022
Score = 42 (19.8 bits), Expect = 4.2e-38, Sum P(6) = 4.2e-38
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 311 (114.5 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 85/302 (28%), Positives = 155/302 (51%)
Query: 262 DYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKR 321
D R ++ LV +C+ L +++K ++ K + G I+ ++GKR
Sbjct: 300 DVRLLQFHVATLVDNCIP----GLPTATQKGGRPLKSIKQ-RLKGKEGR--IRGNLMGKR 352
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+ + +G+P +A+ L E + +N ++L ++ + G Y
Sbjct: 353 VDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKY 412
Query: 381 VCRKGGL-VRIR---RIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
+ R+ G V +R R L L G + R + DGDI++ NR P++H S++ VK+LP
Sbjct: 413 IIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILP 472
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +QLI Q+ + ++ +
Sbjct: 473 WSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGI 531
Query: 495 GQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+L A ++ + V + P + P I K +W+GKQ+FS++
Sbjct: 532 VQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILK--PKPLWTGKQVFSLI 589
Query: 552 LP 553
+P
Sbjct: 590 IP 591
Score = 141 (54.7 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 47/150 (31%), Positives = 69/150 (46%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +GSKG+ + + Q C+G Q+ + F F H
Sbjct: 750 AQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHR----TLPHFI 805
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 806 KDDYGPESKGF-----VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 860
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YDGTVRN+ Q+VQ Y +G
Sbjct: 861 AMESVMVNYDGTVRNSLA-QMVQLRYGEDG 889
Score = 99 (39.9 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSV--MEIGAVSEVTNPRLG-LPNPTN-------ECSS 60
+ P I++ + GI E +++SV +E V E P+LG L +P C +
Sbjct: 9 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 68
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C A + C GHFG ++ + H FL+ K+L +C C
Sbjct: 69 C-AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYC 109
Score = 74 (31.1 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 29/133 (21%), Positives = 59/133 (44%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID R+ ++I GI+A + +++ IS G + HL ++ + ++A G
Sbjct: 1344 IDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 1403
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q V + ++ F ++AA D ++G + + G++
Sbjct: 1404 MAITRHGINRQE----VGA-LMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARC 1458
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1459 GTGC-FDLVLDVE 1470
Score = 50 (22.7 bits), Expect = 4.0e-11, Sum P(6) = 4.0e-11
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 402 IYRPLTDGDIVLINRPPSI-HPHSLIALTVKVLPIS---SVVT 440
+++ +TD DI++I P P +I + V P++ +VVT
Sbjct: 218 VFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVT 260
Score = 44 (20.5 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 565 VYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTV 622
V I G+L+S S + GNL + ++ Y+ Q V+ WL G T+
Sbjct: 622 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTI 681
Query: 623 SLSD 626
+ D
Sbjct: 682 GIGD 685
Score = 38 (18.4 bits), Expect = 5.2e-35, Sum P(5) = 5.2e-35
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 868 IGDQPVGSLSACA-------ISEAAYSALDQPISLLETSPLLNLKNVLECGS 912
I Q VG+L C+ + EAA A + P+ + + +L + CG+
Sbjct: 1411 INRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLG--QLARCGT 1460
Score = 37 (18.1 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 961 IIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLY 1002
I Y + SPW+ + ++ M L I D ++
Sbjct: 1189 IFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIH 1230
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 311 (114.5 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 85/302 (28%), Positives = 155/302 (51%)
Query: 262 DYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKR 321
D R ++ LV +C+ L +++K ++ K + G I+ ++GKR
Sbjct: 300 DVRLLQFHVATLVDNCIP----GLPTATQKGGRPLKSIKQ-RLKGKEGR--IRGNLMGKR 352
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+ + +G+P +A+ L E + +N ++L ++ + G Y
Sbjct: 353 VDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKY 412
Query: 381 VCRKGGL-VRIR---RIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
+ R+ G V +R R L L G + R + DGDI++ NR P++H S++ VK+LP
Sbjct: 413 IIRENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILP 472
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +QLI Q+ + ++ +
Sbjct: 473 WSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGI 531
Query: 495 GQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+L A ++ + V + P + P I K +W+GKQ+FS++
Sbjct: 532 VQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILK--PKPLWTGKQVFSLI 589
Query: 552 LP 553
+P
Sbjct: 590 IP 591
Score = 141 (54.7 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 47/150 (31%), Positives = 69/150 (46%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +GSKG+ + + Q C+G Q+ + F F H
Sbjct: 750 AQKSLSEFNNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFGFRHR----TLPHFI 805
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 806 KDDYGPESKGF-----VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 860
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YDGTVRN+ Q+VQ Y +G
Sbjct: 861 AMESVMVNYDGTVRNSLA-QMVQLRYGEDG 889
Score = 99 (39.9 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSV--MEIGAVSEVTNPRLG-LPNPTN-------ECSS 60
+ P I++ + GI E +++SV +E V E P+LG L +P C +
Sbjct: 9 QAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMT 68
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C A + C GHFG ++ + H FL+ K+L +C C
Sbjct: 69 C-AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYC 109
Score = 74 (31.1 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 29/133 (21%), Positives = 59/133 (44%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID R+ ++I GI+A + +++ IS G + HL ++ + ++A G
Sbjct: 1344 IDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 1403
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q V + ++ F ++AA D ++G + + G++
Sbjct: 1404 MAITRHGINRQE----VGA-LMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARC 1458
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1459 GTGC-FDLVLDVE 1470
Score = 50 (22.7 bits), Expect = 4.0e-11, Sum P(6) = 4.0e-11
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 402 IYRPLTDGDIVLINRPPSI-HPHSLIALTVKVLPIS---SVVT 440
+++ +TD DI++I P P +I + V P++ +VVT
Sbjct: 218 VFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVT 260
Score = 44 (20.5 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 565 VYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTV 622
V I G+L+S S + GNL + ++ Y+ Q V+ WL G T+
Sbjct: 622 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTI 681
Query: 623 SLSD 626
+ D
Sbjct: 682 GIGD 685
Score = 38 (18.4 bits), Expect = 5.2e-35, Sum P(5) = 5.2e-35
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 868 IGDQPVGSLSACA-------ISEAAYSALDQPISLLETSPLLNLKNVLECGS 912
I Q VG+L C+ + EAA A + P+ + + +L + CG+
Sbjct: 1411 INRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLG--QLARCGT 1460
Score = 37 (18.1 bits), Expect = 7.3e-38, Sum P(6) = 7.3e-38
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 961 IIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLY 1002
I Y + SPW+ + ++ M L I D ++
Sbjct: 1189 IFYEMPDHDLSRTSPWLLRIELDRKRMVDKKLTMEMIADRIH 1230
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 297 (109.6 bits), Expect = 1.7e-37, Sum P(6) = 1.7e-37
Identities = 72/251 (28%), Positives = 133/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+++ ++G+P +A + E + +N +RL +
Sbjct: 347 VRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRG 406
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L++G + R + DGDI++ NR P++H S+
Sbjct: 407 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSM 466
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 467 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 525
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 526 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 583
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 584 TGKQIFSLIIP 594
Score = 136 (52.9 bits), Expect = 1.7e-37, Sum P(6) = 1.7e-37
Identities = 46/150 (30%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M AGSKG+ + + Q +G Q+ + F F H
Sbjct: 753 AQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 808
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 809 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 863
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 864 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 892
Score = 106 (42.4 bits), Expect = 1.7e-37, Sum P(6) = 1.7e-37
Identities = 35/126 (27%), Positives = 57/126 (45%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P ++ + G+ + E +++SV E G E T P+LG L +P + C +
Sbjct: 12 PLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQT 71
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI----RKERQKGAGSS 116
C A + C GHFG I+ + H F++ I K+L +C C + + K +
Sbjct: 72 C-AGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTK 130
Query: 117 RKEQPR 122
K QPR
Sbjct: 131 SKGQPR 136
Score = 89 (36.4 bits), Expect = 1.7e-37, Sum P(6) = 1.7e-37
Identities = 29/133 (21%), Positives = 58/133 (43%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1349 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1408
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++A+ G D ++G + + G++
Sbjct: 1409 MAITRHGINRQD-----TGPLMKCSFEETVDVLMEASSHGESDPMKGVSENIMLGQLAPA 1463
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1464 GTGC-FDLLLDAE 1475
Score = 47 (21.6 bits), Expect = 1.5e-31, Sum P(6) = 1.5e-31
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 100 PKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQW 134
P+ + I KE KG G + QPR+ + + A+W
Sbjct: 167 PESEDITKE--KGHGGCGRYQPRIRRSGLELYAEW 199
Score = 40 (19.1 bits), Expect = 1.1e-11, Sum P(5) = 1.1e-11
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 471 ELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMED 508
+LT +A D IN Q RN + S AAH++ ED
Sbjct: 272 DLTHKLA-DIVKINNQLKRN-----EQSGAAAHVIAED 303
Score = 39 (18.8 bits), Expect = 1.7e-37, Sum P(6) = 1.7e-37
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 146 DLSGKTAIIVEIDEKLSKKNKK 167
DL+ K A IV+I+ +L K+N++
Sbjct: 272 DLTHKLADIVKINNQL-KRNEQ 292
Score = 38 (18.4 bits), Expect = 1.7e-37, Sum P(6) = 1.7e-37
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G ++ + D
Sbjct: 670 QTVVNNWLLIEGHSIGIGD 688
Score = 38 (18.4 bits), Expect = 1.7e-11, Sum P(5) = 1.7e-11
Identities = 24/98 (24%), Positives = 40/98 (40%)
Query: 402 IYRPLTDG-DIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I++ + D DI+L P P +I V VLP+ + + P D H
Sbjct: 221 IFKRIADEEDIILGMDPKYARPEWMI---VTVLPVPPLA-VRPAVVMQGSARNQDDLTH- 275
Query: 461 YIPQAIGARVELTELVALDKQLI-NQQSGRNLLSLGQD 497
+L ++V ++ QL N+QSG + +D
Sbjct: 276 ----------KLADIVKINNQLKRNEQSGAAAHVIAED 303
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 297 (109.6 bits), Expect = 2.1e-37, Sum P(6) = 2.1e-37
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 529 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 586
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 587 TGKQIFSLIIP 597
Score = 130 (50.8 bits), Expect = 2.1e-37, Sum P(6) = 2.1e-37
Identities = 44/150 (29%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +G+KG+ + + Q +G Q+ + F F H
Sbjct: 756 AQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 811
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 812 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 867 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 99 (39.9 bits), Expect = 2.1e-37, Sum P(6) = 2.1e-37
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 90 (36.7 bits), Expect = 2.1e-37, Sum P(6) = 2.1e-37
Identities = 30/133 (22%), Positives = 58/133 (43%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++AA G D ++G + + G++
Sbjct: 1412 MAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPA 1466
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1467 GTGC-FDLLLDAE 1478
Score = 43 (20.2 bits), Expect = 2.1e-37, Sum P(6) = 2.1e-37
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G T+ + D
Sbjct: 673 QTVINNWLLIEGHTIGIGD 691
Score = 43 (20.2 bits), Expect = 1.2e-32, Sum P(6) = 1.2e-32
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI 1366
+LR W + ++ L LH + + + E K VI
Sbjct: 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVI 1022
Score = 42 (19.8 bits), Expect = 2.1e-37, Sum P(6) = 2.1e-37
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 297 (109.6 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 529 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 586
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 587 TGKQIFSLIIP 597
Score = 130 (50.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 44/150 (29%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +G+KG+ + + Q +G Q+ + F F H
Sbjct: 756 AQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 811
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 812 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 867 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 99 (39.9 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 90 (36.7 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 30/133 (22%), Positives = 58/133 (43%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++AA G D ++G + + G++
Sbjct: 1412 MAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPA 1466
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1467 GTGC-FDLLLDAE 1478
Score = 43 (20.2 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G T+ + D
Sbjct: 673 QTVINNWLLIEGHTIGIGD 691
Score = 43 (20.2 bits), Expect = 2.4e-32, Sum P(6) = 2.4e-32
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI 1366
+LR W + ++ L LH + + + E K VI
Sbjct: 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVI 1022
Score = 42 (19.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 297 (109.6 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 529 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 586
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 587 TGKQIFSLIIP 597
Score = 130 (50.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 44/150 (29%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +G+KG+ + + Q +G Q+ + F F H
Sbjct: 756 AQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 811
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 812 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 867 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 99 (39.9 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 90 (36.7 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 30/133 (22%), Positives = 58/133 (43%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++AA G D ++G + + G++
Sbjct: 1412 MAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPA 1466
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1467 GTGC-FDLLLDAE 1478
Score = 43 (20.2 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G T+ + D
Sbjct: 673 QTVINNWLLIEGHTIGIGD 691
Score = 43 (20.2 bits), Expect = 2.4e-32, Sum P(6) = 2.4e-32
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI 1366
+LR W + ++ L LH + + + E K VI
Sbjct: 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVI 1022
Score = 42 (19.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 297 (109.6 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 529 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 586
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 587 TGKQIFSLIIP 597
Score = 130 (50.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 44/150 (29%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +G+KG+ + + Q +G Q+ + F F H
Sbjct: 756 AQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 811
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 812 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 867 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 99 (39.9 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 90 (36.7 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 30/133 (22%), Positives = 58/133 (43%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++AA G D ++G + + G++
Sbjct: 1412 MAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPA 1466
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1467 GTGC-FDLLLDAE 1478
Score = 43 (20.2 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G T+ + D
Sbjct: 673 QTVINNWLLIEGHTIGIGD 691
Score = 43 (20.2 bits), Expect = 2.4e-32, Sum P(6) = 2.4e-32
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI 1366
+LR W + ++ L LH + + + E K VI
Sbjct: 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVI 1022
Score = 42 (19.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 297 (109.6 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 529 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 586
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 587 TGKQIFSLIIP 597
Score = 130 (50.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 44/150 (29%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +G+KG+ + + Q +G Q+ + F F H
Sbjct: 756 AQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 811
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 812 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 867 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 99 (39.9 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 90 (36.7 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 30/133 (22%), Positives = 58/133 (43%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++AA G D ++G + + G++
Sbjct: 1412 MAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPA 1466
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1467 GTGC-FDLLLDAE 1478
Score = 43 (20.2 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G T+ + D
Sbjct: 673 QTVINNWLLIEGHTIGIGD 691
Score = 43 (20.2 bits), Expect = 2.4e-32, Sum P(6) = 2.4e-32
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI 1366
+LR W + ++ L LH + + + E K VI
Sbjct: 983 LLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVI 1022
Score = 42 (19.8 bits), Expect = 4.3e-37, Sum P(6) = 4.3e-37
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 345 (126.5 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 132/486 (27%), Positives = 218/486 (44%)
Query: 393 IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
I L +GD++ R + DGDIVL NR PS+H S++ K++ + N CSP++ D
Sbjct: 553 IQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTF-RFNECVCSPYNAD 611
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM-EDSVX 511
FDGD ++ ++PQ AR E L+ + LI ++G +++L QD L+A++++ +D+
Sbjct: 612 FDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFL 671
Query: 512 XXXXXXXXXXXFCPHR-FLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISG 569
F ++ I I K +W+GKQL S+L+ P+ K+ I
Sbjct: 672 DRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPN------KKENTIIN 725
Query: 570 GKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL-- 627
++ E S+ D ++L D + F Y + E++C L + + S L
Sbjct: 726 FEIQEREYSNKFGD-----LKHLC--LNDSYVCF-YKS-ELICGSLGKKVLGSSKYGLFY 776
Query: 628 YLASHSCSR---KIL-----MDEIFY---GLREAQDTCNFQQLMVDSHMNFLMSAKDSES 676
YL H+ S KI+ + ++ G+ D Q + + + L+ + +
Sbjct: 777 YLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVN 836
Query: 677 TRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK----YGSKDNSLLAMFKAGS 732
+ + Q L + K + D++N A K Y N L MF +G+
Sbjct: 837 NEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGA 896
Query: 733 KGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENS 792
KG L+ + Q C+G Q ++A + NR + C S V+NS
Sbjct: 897 KGALINIAQMIACVG-QQNVAG------QRIQNGFINRTLPHFHFHCKDSE-SRGFVQNS 948
Query: 793 FLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQ 850
F TGL+P E F H+++ R+ G + RRLM + DL YD +VR+ Q
Sbjct: 949 FYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSC-DKQ 1007
Query: 851 IVQFSY 856
IVQF Y
Sbjct: 1008 IVQFIY 1013
Score = 96 (38.9 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
GKR D R V++ DPNI + E+ IP +A RL E +N +N ++L + I
Sbjct: 356 GKRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLI 406
Score = 94 (38.1 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + +LG + C +C K C GHFG+I+ + + H + I +L IC C
Sbjct: 74 VLDLKLGAHKSNSVCETCNKKLIN-CSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCS 132
Query: 104 TIRKERQK 111
++ ++K
Sbjct: 133 SLLLSKEK 140
Score = 85 (35.0 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 26/133 (19%), Positives = 64/133 (48%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ +D+ +++ + GI+A + ++ + +I H++++A+ ++ T
Sbjct: 2205 LEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFT 2264
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G+ +G+N G+ R+ + + + F + +SF K ++N+ S+ GK
Sbjct: 2265 GDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFK--NVDEINNISESIIV---GKN 2319
Query: 1249 PSVGTGGHFDIIY 1261
+GTG F ++Y
Sbjct: 2320 IPIGTGA-FQLLY 2331
Score = 47 (21.6 bits), Expect = 3.4e-32, Sum P(5) = 3.4e-32
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 138 MRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFD-AQQEENSVKP--NRKVL 194
+RF + SK+ K + + ++ ++ K N +P Y G + + NSV N+K++
Sbjct: 38 IRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPY-GVLDLKLGAHKSNSVCETCNKKLI 96
Query: 195 SC 196
+C
Sbjct: 97 NC 98
Score = 42 (19.8 bits), Expect = 1.8e-31, Sum P(5) = 1.8e-31
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 195 SCKQVSYLLKDVDPSI 210
+CK V Y +KDV+ ++
Sbjct: 463 NCKNVRYNIKDVNNNV 478
Score = 40 (19.1 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 290 RKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC--FRM-VVTGDPNIKLKEIGI 343
+K + ++ + K + +S R++KD+ KRN + R +++ + IK E+ I
Sbjct: 3 KKKNIDIEELKRLIEESSMKKRFVKDI---KRNCEIKSIRFGIMSKEDIIKYSEVKI 56
Score = 37 (18.1 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 1029 INMQKECNDAFCVTVMIVENFKRTSI 1054
+N+ E ND + +M+ ++T+I
Sbjct: 1846 LNIPLEVNDNYNFALMMKSKLEKTTI 1871
Score = 37 (18.1 bits), Expect = 5.7e-31, Sum P(5) = 5.7e-31
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 251 DNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLD 286
+N+ + K V Y +D+ + L++D I+ ++ D
Sbjct: 457 NNYINNNCKNVRYNIKDVNNNVLLKDMCDINNMNND 492
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 345 (126.5 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 132/486 (27%), Positives = 218/486 (44%)
Query: 393 IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
I L +GD++ R + DGDIVL NR PS+H S++ K++ + N CSP++ D
Sbjct: 553 IQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTF-RFNECVCSPYNAD 611
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM-EDSVX 511
FDGD ++ ++PQ AR E L+ + LI ++G +++L QD L+A++++ +D+
Sbjct: 612 FDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFL 671
Query: 512 XXXXXXXXXXXFCPHR-FLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISG 569
F ++ I I K +W+GKQL S+L+ P+ K+ I
Sbjct: 672 DRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPN------KKENTIIN 725
Query: 570 GKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL-- 627
++ E S+ D ++L D + F Y + E++C L + + S L
Sbjct: 726 FEIQEREYSNKFGD-----LKHLC--LNDSYVCF-YKS-ELICGSLGKKVLGSSKYGLFY 776
Query: 628 YLASHSCSR---KIL-----MDEIFY---GLREAQDTCNFQQLMVDSHMNFLMSAKDSES 676
YL H+ S KI+ + ++ G+ D Q + + + L+ + +
Sbjct: 777 YLIHHNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVN 836
Query: 677 TRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK----YGSKDNSLLAMFKAGS 732
+ + Q L + K + D++N A K Y N L MF +G+
Sbjct: 837 NEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGA 896
Query: 733 KGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENS 792
KG L+ + Q C+G Q ++A + NR + C S V+NS
Sbjct: 897 KGALINIAQMIACVG-QQNVAG------QRIQNGFINRTLPHFHFHCKDSE-SRGFVQNS 948
Query: 793 FLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQ 850
F TGL+P E F H+++ R+ G + RRLM + DL YD +VR+ Q
Sbjct: 949 FYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSC-DKQ 1007
Query: 851 IVQFSY 856
IVQF Y
Sbjct: 1008 IVQFIY 1013
Score = 96 (38.9 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
GKR D R V++ DPNI + E+ IP +A RL E +N +N ++L + I
Sbjct: 356 GKRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLI 406
Score = 94 (38.1 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + +LG + C +C K C GHFG+I+ + + H + I +L IC C
Sbjct: 74 VLDLKLGAHKSNSVCETCNKKLIN-CSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCS 132
Query: 104 TIRKERQK 111
++ ++K
Sbjct: 133 SLLLSKEK 140
Score = 85 (35.0 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 26/133 (19%), Positives = 64/133 (48%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ +D+ +++ + GI+A + ++ + +I H++++A+ ++ T
Sbjct: 2205 LEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFT 2264
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G+ +G+N G+ R+ + + + F + +SF K ++N+ S+ GK
Sbjct: 2265 GDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFK--NVDEINNISESIIV---GKN 2319
Query: 1249 PSVGTGGHFDIIY 1261
+GTG F ++Y
Sbjct: 2320 IPIGTGA-FQLLY 2331
Score = 47 (21.6 bits), Expect = 3.4e-32, Sum P(5) = 3.4e-32
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 138 MRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFD-AQQEENSVKP--NRKVL 194
+RF + SK+ K + + ++ ++ K N +P Y G + + NSV N+K++
Sbjct: 38 IRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPY-GVLDLKLGAHKSNSVCETCNKKLI 96
Query: 195 SC 196
+C
Sbjct: 97 NC 98
Score = 42 (19.8 bits), Expect = 1.8e-31, Sum P(5) = 1.8e-31
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 195 SCKQVSYLLKDVDPSI 210
+CK V Y +KDV+ ++
Sbjct: 463 NCKNVRYNIKDVNNNV 478
Score = 40 (19.1 bits), Expect = 1.6e-26, Sum P(4) = 1.6e-26
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 290 RKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC--FRM-VVTGDPNIKLKEIGI 343
+K + ++ + K + +S R++KD+ KRN + R +++ + IK E+ I
Sbjct: 3 KKKNIDIEELKRLIEESSMKKRFVKDI---KRNCEIKSIRFGIMSKEDIIKYSEVKI 56
Score = 37 (18.1 bits), Expect = 5.6e-37, Sum P(5) = 5.6e-37
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 1029 INMQKECNDAFCVTVMIVENFKRTSI 1054
+N+ E ND + +M+ ++T+I
Sbjct: 1846 LNIPLEVNDNYNFALMMKSKLEKTTI 1871
Score = 37 (18.1 bits), Expect = 5.7e-31, Sum P(5) = 5.7e-31
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 251 DNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLD 286
+N+ + K V Y +D+ + L++D I+ ++ D
Sbjct: 457 NNYINNNCKNVRYNIKDVNNNVLLKDMCDINNMNND 492
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 358 (131.1 bits), Expect = 1.2e-36, Sum P(4) = 1.2e-36
Identities = 143/564 (25%), Positives = 246/564 (43%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + E
Sbjct: 346 LMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEH 405
Query: 377 -GELYVCRKGGLVRIRRIDAL---ELGDI-------IYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID GDI + R + DGD+V+ NR PS+H S+
Sbjct: 406 PGAKYIIRDTG----ERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSM 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ E+ + KQ+++
Sbjct: 462 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSP 520
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH--RFLSPDIFKISKDSVWS 543
QS + ++ + QD+L + P L P + + +W+
Sbjct: 521 QSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVI-LKPKVLWT 579
Query: 544 GKQLFSMLLPP-------DFEYTF--PSKD-VYISGGKLI-SAEGSSWLRDYEGNLFQYL 592
GKQ+ S+++P D + + P+ + I G++I + +G L +
Sbjct: 580 GKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTI 639
Query: 593 IKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
K ++ F Q V+ WL G ++ + D + + M E+ ++EA+
Sbjct: 640 WKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADT------MKEVTRTVKEAR 693
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + D+ N L E +L+ S+E + S L+QA +A +
Sbjct: 694 R--QVAECIQDAQHNRLKP----EPGMTLRE---SFEAKVSRILNQARDNAGRSA----- 739
Query: 712 NLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRFPHELSCAA 767
++ KD N++ M AGSKG+ + + Q S C+G Q P F++ L
Sbjct: 740 ----EHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKY-RTLPHFP 794
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRR 827
+ SY+ + F + E I + + G + RR
Sbjct: 795 KDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET--------GYIQRR 846
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQI 851
L+ M D+ YDGTVRNA G+ I
Sbjct: 847 LVKAMEDVMVRYDGTVRNAMGDII 870
Score = 111 (44.1 bits), Expect = 1.2e-36, Sum P(4) = 1.2e-36
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H FLS I K+L +C
Sbjct: 52 VGGLLDPRLGTIDRQFKCQTCG-ETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCW 110
Query: 101 KCKTIR 106
C ++
Sbjct: 111 NCGKLK 116
Score = 93 (37.8 bits), Expect = 1.2e-36, Sum P(4) = 1.2e-36
Identities = 27/128 (21%), Positives = 58/128 (45%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR++ ++ GI+A L L + I G + HL ++ + +++ G
Sbjct: 1328 VDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHL 1387
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + + ++ F + AA +G D+ +G + + G++ +
Sbjct: 1388 MAITRHGI-----NRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPM 1442
Query: 1252 GTGGHFDI 1259
GTG FDI
Sbjct: 1443 GTGA-FDI 1449
Score = 37 (18.1 bits), Expect = 1.2e-36, Sum P(4) = 1.2e-36
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 940 ALEVKNHLECLMLSDIVSTSMIIYSP 965
A V+ +E LS + S + I Y P
Sbjct: 1134 AKNVQTQIEHTTLSTVTSATEIHYDP 1159
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 297 (109.6 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXXXFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+LTA + V F + P I K +W
Sbjct: 529 QSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLW 586
Query: 543 SGKQLFSMLLP 553
+GKQ+FS+++P
Sbjct: 587 TGKQIFSLIIP 597
Score = 130 (50.8 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 44/150 (29%), Positives = 68/150 (45%)
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
A K S+ N+ +M +G+KG+ + + Q +G Q+ + F F H
Sbjct: 756 AQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR----TLPHFI 811
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 812 KDDYGPESRGF-----VENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIK 866
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
M + YD TVRN+ NQ+VQ Y +G
Sbjct: 867 SMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 99 (39.9 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 43 (20.2 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 608 QEVLCEWLSVRGMTVSLSD 626
Q V+ WL + G T+ + D
Sbjct: 673 QTVINNWLLIEGHTIGIGD 691
Score = 42 (19.8 bits), Expect = 1.6e-34, Sum P(5) = 1.6e-34
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 172 (65.6 bits), Expect = 1.9e-32, Sum P(5) = 1.9e-32
Identities = 50/190 (26%), Positives = 89/190 (46%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I+ R + +GD++L+NR P++H S+ A ++LP V+ ++ C ++ DFDGD ++
Sbjct: 542 IVNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNA 601
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD------SLTAAHLLMEDSVXXXX 514
+ PQ+ +R E LV+ D+Q + + G+ L L QD S+T
Sbjct: 602 HFPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTAL 661
Query: 515 XXXXXXXXFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYIS-GGKLI 573
+ L P + K +W+GKQ+ S LL P + ++ GK
Sbjct: 662 VYRGLTDKIGRVKLLPPTLIK--PVLLWTGKQVVSTLLLN----VIPENSIPLNLTGKA- 714
Query: 574 SAEGSSWLRD 583
G +W+++
Sbjct: 715 KIPGKAWVKE 724
Score = 137 (53.3 bits), Expect = 1.9e-32, Sum P(5) = 1.9e-32
Identities = 59/223 (26%), Positives = 95/223 (42%)
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
TC + L + N SA+D+E+ Q HL+ +++ + + V +I
Sbjct: 817 TCGSKALQ--AAFNLPASAEDTEARERWQDAHLNIDQRDFNMVDLKFKEEVNQVNNNINK 874
Query: 713 LAYKYGSK----DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
+ G +N+L M ++G+KG+ + +Q S LG L R P +
Sbjct: 875 VCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQ----IELEGRRPPLMP---- 926
Query: 769 NRLRAGDNTECAKSYIPS----AVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLP 821
+G + C + Y P V FLTG+ P E F H + R+ D A
Sbjct: 927 ----SGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREG-LVDTAVKTSRS 981
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
G L R ++ + L YD TVR++ G+ +VQF Y +G P
Sbjct: 982 GYLQRCVIKHLEGLVVQYDLTVRDSDGS-VVQFLYGEDGLDIP 1023
Score = 117 (46.2 bits), Expect = 1.9e-32, Sum P(5) = 1.9e-32
Identities = 38/139 (27%), Positives = 62/139 (44%)
Query: 1122 MNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIV 1181
+++ + D++D R + + + + YGI+ L+ ++ + G + P HL +V
Sbjct: 1575 IHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLV 1634
Query: 1182 ANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSV 1240
A+ + G + LN G+ S SSP Q F F+K A G+ D L
Sbjct: 1635 ADYMCFEGVYKPLNRFGI------QSNSSPLQQMTFET-SFKFLKQATMLGSYDKLSSPS 1687
Query: 1241 DALGWGKVPSVGTGGHFDI 1259
L GKV GTG FD+
Sbjct: 1688 ACLVVGKVVKGGTG-IFDL 1705
Score = 113 (44.8 bits), Expect = 1.9e-32, Sum P(5) = 1.9e-32
Identities = 35/110 (31%), Positives = 49/110 (44%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIG---AVSEVTNPRL-GL------PNPTNE-CS 59
E P L G+S G+ + E KLSV I + V N GL P E CS
Sbjct: 6 ETPWRRLEGMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICS 65
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKER 109
+C +D +C GHFG I+ P + +P F + L+ C C ++ R
Sbjct: 66 TC-MQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHILKCPR 114
Score = 73 (30.8 bits), Expect = 1.9e-32, Sum P(5) = 1.9e-32
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWN 361
++GKR D R V+ D I EIGIP A +L + + WN
Sbjct: 438 MMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWN 482
Score = 40 (19.1 bits), Expect = 1.2e-22, Sum P(5) = 1.2e-22
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 892 PISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
P+ L + P NL+ +++ G+K S + TM +
Sbjct: 878 PLGLHRSFPENNLQMMVQSGAKGSTVN-TMQI 908
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 165 (63.1 bits), Expect = 1.9e-30, Sum P(6) = 1.9e-30
Identities = 50/188 (26%), Positives = 89/188 (47%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I+ R + +GDI+L+NR P++H S+ A ++LP V+ ++ C ++ DFDGD ++
Sbjct: 537 IVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNA 596
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 597 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 656
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLLPPDFEYTFPSKDVYIS-GGKLISA 575
+ +F I K +W+GKQ+ S LL P + +S GK
Sbjct: 657 LYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLIN----IIPEDHIPLSLSGKA-KI 711
Query: 576 EGSSWLRD 583
G +W+++
Sbjct: 712 SGKAWVQE 719
Score = 136 (52.9 bits), Expect = 1.9e-30, Sum P(6) = 1.9e-30
Identities = 71/281 (25%), Positives = 117/281 (41%)
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
V + +N +A E Q HL +++ + + H +I +G
Sbjct: 827 VRAALNLPEAASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLH 886
Query: 721 ----DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
DN+L M ++G+KG+ + +Q S LG L R P ++ +G +
Sbjct: 887 RQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKS 934
Query: 777 TECAKSY--IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLM 829
C + Y P A V FLTG+ P E F H + R+ D A G L R ++
Sbjct: 935 LPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCII 993
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ---PVGSLSACAISEAAY 886
+ L YD TVR++ G+ +VQF Y +G P + P + + I ++ Y
Sbjct: 994 KHLEGLVVQYDLTVRDSDGS-VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYKVIMKSKY 1052
Query: 887 SALDQPISLLETSPLL-NLKNVLECGSKKSNADQTMSLFLS 926
L + +S + L + + + + SK SNA Q FL+
Sbjct: 1053 --LHEVLSRADPQKALRHFRAIKKWQSKHSNALQRKGAFLN 1091
Score = 113 (44.8 bits), Expect = 1.9e-30, Sum P(6) = 1.9e-30
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D +R + ++I + YGI+A L+ + + G + P HL +VA+ + G
Sbjct: 1590 EVLDLSRLYSNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEG 1649
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1650 VYKPLNRFGIR------SNSSPLQQMTFET-SFQFLKQATMMGSHDELRSPSACLVVGKV 1702
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1703 VKGGTG 1708
Score = 109 (43.4 bits), Expect = 1.9e-30, Sum P(6) = 1.9e-30
Identities = 33/97 (34%), Positives = 45/97 (46%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I + + NP GL P + E CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I+ P T+ +P + LL C C
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 78 (32.5 bits), Expect = 1.9e-30, Sum P(6) = 1.9e-30
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR D R V+ D I EIGIP A +L + + WN + L
Sbjct: 432 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Score = 40 (19.1 bits), Expect = 3.7e-23, Sum P(6) = 3.7e-23
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1258 DIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEK 1289
DI ++ T K VD Y+L + K +K
Sbjct: 1153 DIYFASVSETFEKKVDDYSLEWAAQAEKSYKK 1184
Score = 39 (18.8 bits), Expect = 3.6e-08, Sum P(6) = 3.6e-08
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1084 LWKDKQKASKSHDDSFGELYLRVSMSGQCHITS-LW 1118
LW KQ S + E ++ +S+SG+ I+ W
Sbjct: 681 LWTGKQVVSTLLINIIPEDHIPLSLSGKAKISGKAW 716
Score = 37 (18.1 bits), Expect = 1.9e-30, Sum P(6) = 1.9e-30
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 205 CPHCKTGRSVVRKE 218
Score = 37 (18.1 bits), Expect = 1.4e-17, Sum P(6) = 1.4e-17
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 465 AIGARVELTELVALDKQLINQQSG 488
A+ A ++LT+ A+ KQL+ +G
Sbjct: 506 ALSA-IDLTQREAVAKQLLTPATG 528
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 165 (63.1 bits), Expect = 2.1e-30, Sum P(6) = 2.1e-30
Identities = 50/188 (26%), Positives = 89/188 (47%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I+ R + +GDI+L+NR P++H S+ A ++LP V+ ++ C ++ DFDGD ++
Sbjct: 549 IVCRHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNA 608
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 609 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 668
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLLPPDFEYTFPSKDVYIS-GGKLISA 575
+ +F I K +W+GKQ+ S LL P + +S GK
Sbjct: 669 LYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLIN----IIPEDHIPLSLSGKA-KI 723
Query: 576 EGSSWLRD 583
G +W+++
Sbjct: 724 SGKAWVQE 731
Score = 136 (52.9 bits), Expect = 2.1e-30, Sum P(6) = 2.1e-30
Identities = 71/281 (25%), Positives = 117/281 (41%)
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
V + +N +A E Q HL +++ + + H +I +G
Sbjct: 839 VRAALNLPEAASCDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLH 898
Query: 721 ----DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
DN+L M ++G+KG+ + +Q S LG L R P ++ +G +
Sbjct: 899 RQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKS 946
Query: 777 TECAKSY--IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLM 829
C + Y P A V FLTG+ P E F H + R+ D A G L R ++
Sbjct: 947 LPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCII 1005
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ---PVGSLSACAISEAAY 886
+ L YD TVR++ G+ +VQF Y +G P + P + + I ++ Y
Sbjct: 1006 KHLEGLVVQYDLTVRDSDGS-VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYKVIMKSKY 1064
Query: 887 SALDQPISLLETSPLL-NLKNVLECGSKKSNADQTMSLFLS 926
L + +S + L + + + + SK SNA Q FL+
Sbjct: 1065 --LHEVLSRADPQKALRHFRAIKKWQSKHSNALQRKGAFLN 1103
Score = 113 (44.8 bits), Expect = 2.1e-30, Sum P(6) = 2.1e-30
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D +R + ++I + YGI+A L+ + + G + P HL +VA+ + G
Sbjct: 1619 EVLDLSRLYSNDIHAMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEG 1678
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1679 VYKPLNRFGIR------SNSSPLQQMTFET-SFQFLKQATMMGSHDELRSPSACLVVGKV 1731
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1732 VKGGTG 1737
Score = 109 (43.4 bits), Expect = 2.1e-30, Sum P(6) = 2.1e-30
Identities = 33/97 (34%), Positives = 45/97 (46%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I + + NP GL P + E CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I+ P T+ +P + LL C C
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 78 (32.5 bits), Expect = 2.1e-30, Sum P(6) = 2.1e-30
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR D R V+ D I EIGIP A +L + + WN + L
Sbjct: 444 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 492
Score = 40 (19.1 bits), Expect = 4.1e-23, Sum P(6) = 4.1e-23
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1258 DIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEK 1289
DI ++ T K VD Y+L + K +K
Sbjct: 1165 DIYFASVSETFEKKVDDYSLEWAAQAEKSYKK 1196
Score = 39 (18.8 bits), Expect = 3.9e-08, Sum P(6) = 3.9e-08
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1084 LWKDKQKASKSHDDSFGELYLRVSMSGQCHITS-LW 1118
LW KQ S + E ++ +S+SG+ I+ W
Sbjct: 693 LWTGKQVVSTLLINIIPEDHIPLSLSGKAKISGKAW 728
Score = 37 (18.1 bits), Expect = 2.1e-30, Sum P(6) = 2.1e-30
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 207 CPHCKTGRSVVRKE 220
Score = 37 (18.1 bits), Expect = 1.5e-17, Sum P(6) = 1.5e-17
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 465 AIGARVELTELVALDKQLINQQSG 488
A+ A ++LT+ A+ KQL+ +G
Sbjct: 518 ALSA-IDLTQREAVAKQLLTPATG 540
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 163 (62.4 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 44/156 (28%), Positives = 77/156 (49%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I+ R + +GDI+L+NR P++H S+ A ++LP V+ ++ C ++ DFDGD ++
Sbjct: 541 IVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNA 600
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 601 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 660
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLL 552
+ +F I K +W+GKQ+ S LL
Sbjct: 661 VYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLL 696
Score = 123 (48.4 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 64/258 (24%), Positives = 106/258 (41%)
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
RG T+ + D+ + + R+ + + E C + V + +N +A E
Sbjct: 797 RGFTLGVEDILVKPRADVRR-------HRIIEESTRCGPRA--VRAALNLPEAASCDEVR 847
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK----DNSLLAMFKAGSK 733
Q HLS +++ + + H +I G +N+L M ++G+K
Sbjct: 848 GKWQDAHLSKDQRDFNMIDLKFKEEVNHHSNEINKACMPLGLHRQFPENNLQMMVQSGAK 907
Query: 734 GNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY--IPSA--VV 789
G+ + +Q S LG L R P ++ +G + C + Y P A V
Sbjct: 908 GSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKSLPCFEPYEFTPRAGGFV 955
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNA 846
FLTG+ P E F H + R+ D A G L R ++ + L YD TVR++
Sbjct: 956 TGRFLTGIRPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDS 1014
Query: 847 YGNQIVQFSYNIEGTSTP 864
G+ +VQF Y +G P
Sbjct: 1015 DGS-VVQFLYGEDGLDIP 1031
Score = 114 (45.2 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 32/97 (32%), Positives = 44/97 (45%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPR--------LGLPNPTNECSSCGAKD 65
L GIS G+ + E +KLSV I + + NP LG P+ CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I+ P T+ +P + LL C C
Sbjct: 71 FNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 110 (43.8 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1596 EVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1655
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1656 VYKPLNRFGIR------SNSSPLQQMTFET-SFQFLKQATMMGSHDELRSPSACLVVGKV 1708
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1709 VRGGTG 1714
Score = 78 (32.5 bits), Expect = 5.9e-30, Sum P(5) = 5.9e-30
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR D R V+ D I EIGIP A +L + + WN + L
Sbjct: 436 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 484
Score = 44 (20.5 bits), Expect = 2.8e-23, Sum P(5) = 2.8e-23
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 1258 DIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEK 1289
DI ++ T K +D Y+L + K +EK
Sbjct: 1157 DIYFASVSETFEKKMDDYSLEWAAQAEKSHEK 1188
Score = 38 (18.4 bits), Expect = 2.2e-21, Sum P(5) = 2.2e-21
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 892 PISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
P+ L P NL+ +++ G+K S + TM +
Sbjct: 886 PLGLHRQFPENNLQMMVQSGAKGSTVN-TMQI 916
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 170 (64.9 bits), Expect = 7.1e-30, Sum P(6) = 7.1e-30
Identities = 47/158 (29%), Positives = 75/158 (47%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I+ R + +GDI+L+NR P++H S+ A ++LP V+ ++ C ++ DFDGD ++
Sbjct: 537 IVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNA 596
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD------SLTAAHLLMEDSVXXXX 514
+ PQ+ R E L D+Q + + G+ L L QD S+T
Sbjct: 597 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMEL 656
Query: 515 XXXXXXXXFCPHRFLSPDIFKISKDSVWSGKQLFSMLL 552
+ LSP I K +W+GKQ+ S LL
Sbjct: 657 VYRGLTDKVGRVKLLSPSILK--PFPLWTGKQVVSTLL 692
Score = 127 (49.8 bits), Expect = 7.1e-30, Sum P(6) = 7.1e-30
Identities = 57/215 (26%), Positives = 90/215 (41%)
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
V + +N +A E Q HL +++ + + H +I +G
Sbjct: 827 VRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLH 886
Query: 721 ----DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
+NSL M ++G+KG+ + +Q S LG L R P ++ +G +
Sbjct: 887 RQFPENSLQMMVQSGAKGSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKS 934
Query: 777 TECAKSY--IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLM 829
C + Y P A V FLTG+ P E F H + R+ D A G L R ++
Sbjct: 935 LPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCII 993
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
+ L YD TVR++ G+ +VQF Y +G P
Sbjct: 994 KHLEGLVVQYDLTVRDSDGS-VVQFLYGEDGLDIP 1027
Score = 110 (43.8 bits), Expect = 7.1e-30, Sum P(6) = 7.1e-30
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1532 EVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1591
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1592 VYKPLNRFGIR------SNSSPLQQMTFET-SFQFLKQATMLGSHDELRSPSACLVVGKV 1644
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1645 VRGGTG 1650
Score = 109 (43.4 bits), Expect = 7.1e-30, Sum P(6) = 7.1e-30
Identities = 33/97 (34%), Positives = 45/97 (46%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I + + NP GL P + E CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I+ P T+ +P + LL C C
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 78 (32.5 bits), Expect = 7.1e-30, Sum P(6) = 7.1e-30
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR D R V+ D I EIGIP A +L + + WN + L
Sbjct: 432 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Score = 43 (20.2 bits), Expect = 3.5e-23, Sum P(6) = 3.5e-23
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIR 1367
V+ KS ++VL ++ KK LH + ++ K T++R
Sbjct: 1046 VIMKSQHLHEVLSRADP-KKALHHFRAIKKWQSKHPNTLLR 1085
Score = 40 (19.1 bits), Expect = 3.4e-21, Sum P(6) = 3.4e-21
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1084 LWKDKQKASKSHDDSFGELYLRVSMSGQCHITS-LW 1118
LW KQ S + E ++ +++SG+ IT W
Sbjct: 681 LWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAW 716
Score = 37 (18.1 bits), Expect = 7.1e-30, Sum P(6) = 7.1e-30
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 205 CPHCKTGRSVVRKE 218
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 170 (64.9 bits), Expect = 9.0e-30, Sum P(6) = 9.0e-30
Identities = 47/158 (29%), Positives = 75/158 (47%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I+ R + +GDI+L+NR P++H S+ A ++LP V+ ++ C ++ DFDGD ++
Sbjct: 537 IVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNA 596
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD------SLTAAHLLMEDSVXXXX 514
+ PQ+ R E L D+Q + + G+ L L QD S+T
Sbjct: 597 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMEL 656
Query: 515 XXXXXXXXFCPHRFLSPDIFKISKDSVWSGKQLFSMLL 552
+ LSP I K +W+GKQ+ S LL
Sbjct: 657 VYRGLTDKVGRVKLLSPSILK--PFPLWTGKQVVSTLL 692
Score = 127 (49.8 bits), Expect = 9.0e-30, Sum P(6) = 9.0e-30
Identities = 57/215 (26%), Positives = 90/215 (41%)
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
V + +N +A E Q HL +++ + + H +I +G
Sbjct: 827 VRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLH 886
Query: 721 ----DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
+NSL M ++G+KG+ + +Q S LG L R P ++ +G +
Sbjct: 887 RQFPENSLQMMVQSGAKGSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKS 934
Query: 777 TECAKSY--IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLM 829
C + Y P A V FLTG+ P E F H + R+ D A G L R ++
Sbjct: 935 LPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCII 993
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
+ L YD TVR++ G+ +VQF Y +G P
Sbjct: 994 KHLEGLVVQYDLTVRDSDGS-VVQFLYGEDGLDIP 1027
Score = 110 (43.8 bits), Expect = 9.0e-30, Sum P(6) = 9.0e-30
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1593 EVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1653 VYKPLNRFGIR------SNSSPLQQMTFET-SFQFLKQATMLGSHDELRSPSACLVVGKV 1705
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1706 VRGGTG 1711
Score = 109 (43.4 bits), Expect = 9.0e-30, Sum P(6) = 9.0e-30
Identities = 33/97 (34%), Positives = 45/97 (46%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I + + NP GL P + E CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I+ P T+ +P + LL C C
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 78 (32.5 bits), Expect = 9.0e-30, Sum P(6) = 9.0e-30
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR D R V+ D I EIGIP A +L + + WN + L
Sbjct: 432 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Score = 43 (20.2 bits), Expect = 4.4e-23, Sum P(6) = 4.4e-23
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 1327 VLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIR 1367
V+ KS ++VL ++ KK LH + ++ K T++R
Sbjct: 1046 VIMKSQHLHEVLSRADP-KKALHHFRAIKKWQSKHPNTLLR 1085
Score = 40 (19.1 bits), Expect = 4.3e-21, Sum P(6) = 4.3e-21
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1084 LWKDKQKASKSHDDSFGELYLRVSMSGQCHITS-LW 1118
LW KQ S + E ++ +++SG+ IT W
Sbjct: 681 LWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAW 716
Score = 37 (18.1 bits), Expect = 9.0e-30, Sum P(6) = 9.0e-30
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 205 CPHCKTGRSVVRKE 218
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 350 (128.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 174/709 (24%), Positives = 303/709 (42%)
Query: 179 DAQQEENSVKPNRKVLSC-KQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVT- 236
DA + E V ++L+ K +S +KD E + L C PV P R +
Sbjct: 193 DADEPELRVLSTEEILNIFKHIS--VKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSI 250
Query: 237 EVPHAFSHEKKLFF---DNWTRHLK-KMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKD 292
+ E L F D ++ + +++ G H +++ + + H+ D
Sbjct: 251 SFNESQRGEDDLTFKLADILKANISLETLEHNGAP---HHAIEEAESLLQFHVATYMDND 307
Query: 293 SA---EVRQKKNIDISN-SSGLRW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIP 344
A + QK + + + L+ I+ ++GKR D R V++GDPN++L ++G+P
Sbjct: 308 IAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVP 367
Query: 345 CQVAERLQISERLNSWNWERLSVCISFRLLEK-GELYVCRKGG-LVRIR---RIDALEL- 398
+A+ L E + +N +RL+ + E G YV R G + +R R ++L
Sbjct: 368 KSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQ 427
Query: 399 -GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDC 457
G + R + D D VL NR PS+H S++A VKV+P S+ +N SP++ DFDGD
Sbjct: 428 YGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDE 486
Query: 458 LHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAH-LLMEDSVXXXXXX 516
++ ++PQ+ R EL++L A+ Q+++ QS + + + QD+L L + D+
Sbjct: 487 MNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQV 546
Query: 517 XXXXXXFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPP-------DFEYTFPS-KD--VY 566
+ P I +WSGKQ+ S+ +P D T S KD +
Sbjct: 547 LNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGML 606
Query: 567 ISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSL 624
I G++I + G L + + +V L+ Q+V+ WL G + +
Sbjct: 607 IIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGI 666
Query: 625 SDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684
D +A R+I + I ++ D ++ N L++AK + R
Sbjct: 667 GDT-IADGPTMREIT-ETIAEAKKKVLDVTK------EAQAN-LLTAKHGMTLRE----- 712
Query: 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
S+E L++A A + ++++L N++ M AGSKG+ + + Q S
Sbjct: 713 -SFEDNVVRFLNEARDKAGRLAEVNLKDL--------NNVKQMVMAGSKGSFINIAQMSA 763
Query: 745 CLGLQHSLAP-LSFRF-PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLEC 802
C+G Q ++F F L + + SY+ + F + E
Sbjct: 764 CVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823
Query: 803 FIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQI 851
I + + G + RRL+ + D+ YD T RN+ GN I
Sbjct: 824 LIDTAVKTAET--------GYIQRRLVKALEDIMVHYDNTTRNSLGNVI 864
Score = 177 (67.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 107/409 (26%), Positives = 172/409 (42%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC-KTIRKE-----RQKGA-GSSRKEQPRV---CK---YCVRN-PA 132
F++ I K+ +C C K + E RQ A S+K + CK C + P+
Sbjct: 95 FIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPS 154
Query: 133 QWYPRMRFKLSSKDLSGKTAIIVEIDE-KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNR 191
+ P +L S+ G T + D KL KK D G DA + E V
Sbjct: 155 EDDPT---QLVSRGGCGNTQPTIRKDGLKLVGSWKK--DRATG----DADEPELRVLSTE 205
Query: 192 KVLSC-KQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFF 250
++L+ K +S +KD E + L C PV P R P +E +
Sbjct: 206 EILNIFKHIS--VKDFTSLGFNEVFSRPEWMILTCLPVPPPPVR----PSISFNESQRGE 259
Query: 251 DNWTRHLKKMVDYRGRDIELS---------HLVQDCLKISKLHLDKSSRKDSA---EVRQ 298
D+ T K+ D +I L H +++ + + H+ D A + Q
Sbjct: 260 DDLTF---KLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQ 316
Query: 299 KKNIDISN-SSGLRW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQI 353
K + + + L+ I+ ++GKR D R V++GDPN++L ++G+P +A+ L
Sbjct: 317 KSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTY 376
Query: 354 SERLNSWNWERLSVCISFRLLEK-GELYVCRKGGLVRIRRIDALELGDI 401
E + +N +RL+ + E G YV R G RI + GDI
Sbjct: 377 PEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSG-DRIDLRYSKRAGDI 424
Score = 80 (33.2 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 25/133 (18%), Positives = 56/133 (42%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID TR + ++ GI+AG + + I+ G + H+ ++ + ++ G
Sbjct: 1322 IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGL 1381
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ G + S + ++ F +A + +D+ +G + + G++ +
Sbjct: 1382 TSVTRHGF-----NRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPI 1436
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1437 GTGA-FDVMIDEE 1448
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 173 (66.0 bits), Expect = 2.2e-29, Sum P(6) = 2.2e-29
Identities = 35/101 (34%), Positives = 61/101 (60%)
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
++R +++GD+VL+NR P++H S++ V+VLP + ++ C+ ++ DFDGD ++ +
Sbjct: 593 VHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMH 652
Query: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAA 502
PQ AR E +L D Q I+ G+ L L QD L+ +
Sbjct: 653 FPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVS 693
Score = 126 (49.4 bits), Expect = 2.2e-29, Sum P(6) = 2.2e-29
Identities = 78/305 (25%), Positives = 118/305 (38%)
Query: 565 VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQ-EVLCEWLSVRGMTV 622
V G+ IS + L G L + + Y + L +A +L +L++R T
Sbjct: 785 VLFRDGEFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMGRLLTRYLNMRAFTC 844
Query: 623 SLSDLYLASHS-CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQ 681
+ DL L R+ ++D + L Q + L D H + D E R L
Sbjct: 845 GMDDLKLTPEGEADRRNIIDSRAH-LVGLQVAAKYVSL--DQHQP---ANDDPELLRRL- 897
Query: 682 GEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD----NSLLAMFKAGSKGNLL 737
E + + + L KH+ DI G + N + AM +G+KG +
Sbjct: 898 -EEVMRDDTKQEGLDGVMNSGSKHLSQDITTACLPKGLEKQFPKNQMQAMTISGAKGGQV 956
Query: 738 KLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGL 797
S LG Q L R P +S + + + A YI N FLTG+
Sbjct: 957 NANLISCNLG-QQVLE--GRRVPLMVSGKSLPCFKPFETDIRAGGYIV-----NRFLTGI 1008
Query: 798 NPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E + H + R+ G L R L+ M L YD +VR+A G+ +VQF
Sbjct: 1009 RPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIGYDNSVRDADGS-LVQFL 1067
Query: 856 YNIEG 860
Y +G
Sbjct: 1068 YGEDG 1072
Score = 105 (42.0 bits), Expect = 2.2e-29, Sum P(6) = 2.2e-29
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P LG + C++C AC GH G I+ P + HP F+ + +LL S C C
Sbjct: 51 DPALGAWGDS-VCATCNLGP-SACPGHPGHIELPVPVYHPVFMDQVLRLLRSQCAYCHRF 108
Query: 106 RKERQ 110
R R+
Sbjct: 109 RMRRR 113
Score = 95 (38.5 bits), Expect = 2.2e-29, Sum P(6) = 2.2e-29
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 265 GRDIELSHL----VQDCLKISKLHLDKSSRKDSAEVRQKKNID--ISNSSGLRWIKDVVL 318
G+D + H +QDC+ + + KS + +A ++ I + GL + ++
Sbjct: 432 GKDTTILHEAWTELQDCVN-TLIDNTKSPTQGAAAKALEEGIKQKLEKKEGL--FRKNMM 488
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
GKR + R V++ DPNI+ EIG+P A +L E + S N+ + +
Sbjct: 489 GKRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAV 539
Score = 88 (36.0 bits), Expect = 2.2e-29, Sum P(6) = 2.2e-29
Identities = 35/134 (26%), Positives = 59/134 (44%)
Query: 1127 QIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLS 1186
Q I+ R +++ + YG++A + L + + HL ++A+ ++
Sbjct: 1579 QYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRHLNLIADHMT 1638
Query: 1187 ATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGW 1245
+G F N GL+ +VS PF + F A F+K A G D+L L
Sbjct: 1639 RSGGFTPFNRMGLS-----GNVS-PFTKMSFETTLA-FLKDAVLDGDWDDLSTPSGRLVM 1691
Query: 1246 GKVPSVGTGGHFDI 1259
G++ VGTG FD+
Sbjct: 1692 GRLGHVGTGA-FDV 1704
Score = 42 (19.8 bits), Expect = 3.3e-17, Sum P(4) = 3.3e-17
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 1401 SLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAK 1436
+L +D ++ +YH+ V AL PE I R +
Sbjct: 695 ALCNKDTYLDRSAYHELVYNALR---PESGHILRER 727
Score = 40 (19.1 bits), Expect = 2.2e-29, Sum P(6) = 2.2e-29
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 1087 DKQKASKSHDDSFG 1100
DKQKA++S S+G
Sbjct: 1410 DKQKANRSEAVSYG 1423
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 163 (62.4 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 45/156 (28%), Positives = 77/156 (49%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
I+ R + +GDI+L+NR P++H S+ A +VLP V+ ++ C ++ DFDGD ++
Sbjct: 537 IVCRHVKNGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMNA 596
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 597 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYMEL 656
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLL 552
+ +F I K +W+GKQ+ S LL
Sbjct: 657 VFRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLL 692
Score = 130 (50.8 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 64/258 (24%), Positives = 107/258 (41%)
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
RG T+ + D+ + + R+ +G+ E C + V + +N + E
Sbjct: 793 RGFTLGVEDILVKPKADVRR-------HGIIEDSTHCGPRA--VRAALNLPEAVSCDEVQ 843
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK----DNSLLAMFKAGSK 733
Q HLS +++ + + H +I +G +N+L M ++G+K
Sbjct: 844 GKWQDAHLSKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAK 903
Query: 734 GNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY--IPSA--VV 789
G+ + +Q S LG L R P ++ +G + C + Y P A V
Sbjct: 904 GSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKSLPCFEPYEFTPRAGGFV 951
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNA 846
FLTG+ P E F H + R+ D A G L R ++ + L YD TVR++
Sbjct: 952 TGRFLTGIKPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDS 1010
Query: 847 YGNQIVQFSYNIEGTSTP 864
G+ +VQF Y +G P
Sbjct: 1011 DGS-VVQFLYGEDGLDIP 1027
Score = 111 (44.1 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1590 EVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1649
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKA-GAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1650 VYKPLNRFGIR------SNSSPLQQMTFET-SFQFLKQATLMGSHDELRSPSACLVVGKV 1702
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1703 VKGGTG 1708
Score = 108 (43.1 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 33/97 (34%), Positives = 45/97 (46%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I + + NP + GL P + E CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I P T+ +P + LL C C
Sbjct: 71 FTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 78 (32.5 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR D R V+ D I EIGIP A +L + + WN + L
Sbjct: 432 MMGKRVDYAARSVICPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQEL 480
Score = 38 (18.4 bits), Expect = 3.5e-20, Sum P(6) = 3.5e-20
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 653 TCNFQQLMVDSHMNFLMSAKDSE 675
T N++ +M H++ ++S D +
Sbjct: 1041 TSNYEVIMKSKHLHEVLSRADPQ 1063
Score = 37 (18.1 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 205 CPHCKTGRSVVRKE 218
Score = 37 (18.1 bits), Expect = 8.7e-08, Sum P(6) = 8.7e-08
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 450 HGDFDGDCLH-GYIPQAIGARVELTELVALDK 480
HG + D H G P+A+ A + L E V+ D+
Sbjct: 813 HGIIE-DSTHCG--PRAVRAALNLPEAVSCDE 841
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 162 (62.1 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 43/156 (27%), Positives = 77/156 (49%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
++ R + +GDI+L+NR P++H S+ A ++LP V+ ++ C ++ DFDGD ++
Sbjct: 544 VVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNA 603
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 604 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 663
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLL 552
+ +F I K +W+GKQ+ S LL
Sbjct: 664 VYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLL 699
Score = 126 (49.4 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 64/258 (24%), Positives = 106/258 (41%)
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
RG T+ + D+ + ++ D + + E C Q V + ++ +A E
Sbjct: 800 RGFTLGVEDILVKPNA-------DVVRQRIIEESTQCGPQA--VKAALSLPETASCDEIQ 850
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK----DNSLLAMFKAGSK 733
Q HLS +++ + + H +I G +N+L M ++G+K
Sbjct: 851 GKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAK 910
Query: 734 GNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY--IPSA--VV 789
G+ + +Q S LG L R P ++ +G + C + Y P A V
Sbjct: 911 GSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKSLPCFEPYEFTPRAGGFV 958
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNA 846
FLTG+ P E F H + R+ D A G L R ++ + L YD TVR++
Sbjct: 959 TGRFLTGIRPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDS 1017
Query: 847 YGNQIVQFSYNIEGTSTP 864
G+ +VQF Y +G P
Sbjct: 1018 DGS-VVQFLYGEDGLDIP 1034
Score = 113 (44.8 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1590 EILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1649
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1650 VYKPLNRFGI------QSSSSPLQQMTFET-SFQFLKQATMMGSHDELKSPSACLVVGKV 1702
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1703 VKGGTG 1708
Score = 109 (43.4 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 33/97 (34%), Positives = 45/97 (46%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I V + NP GL P + E C++C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I P T+ +P+ + LL C C
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSC 107
Score = 80 (33.2 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR D R V+ D I EIGIP A +L + + WN + L I+ +
Sbjct: 439 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVH 498
Query: 376 KGELYVCRK-GGLVRIRRIDALELGDIIYRPLT 407
G V + G + +DA + + + LT
Sbjct: 499 PGASMVINEDGSRTALSSVDAAQREAVAKQLLT 531
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 181 QQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKD 219
++EE+S KP R+ S Q + +K ++RE + +D
Sbjct: 1474 EEEESSQKPPRRH-SRPQGAEAIKRRIQAVRESYSFIED 1511
Score = 39 (18.8 bits), Expect = 1.1e-20, Sum P(6) = 1.1e-20
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 1084 LWKDKQKASKSHDDSFGELYLRVSMSGQCHITS-LW 1118
LW KQ S + E Y +++SG+ I S W
Sbjct: 688 LWTGKQVVSTLLINIIPEDYAPLNLSGKAKIGSKAW 723
Score = 38 (18.4 bits), Expect = 1.4e-20, Sum P(6) = 1.4e-20
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 892 PISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
P+ L P NL+ +++ G+K S + TM +
Sbjct: 889 PLGLHRQFPENNLQMMVQSGAKGSTVN-TMQI 919
Score = 37 (18.1 bits), Expect = 2.5e-29, Sum P(6) = 2.5e-29
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 205 CPHCKTGRSVVRKE 218
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 159 (61.0 bits), Expect = 5.1e-29, Sum P(6) = 5.1e-29
Identities = 43/156 (27%), Positives = 76/156 (48%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
++ R + +GDI+L+NR P++H S+ A +LP V+ ++ C ++ DFDGD ++
Sbjct: 544 VVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNA 603
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 604 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 663
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLL 552
+ +F I K +W+GKQ+ S LL
Sbjct: 664 VYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLL 699
Score = 126 (49.4 bits), Expect = 5.1e-29, Sum P(6) = 5.1e-29
Identities = 63/258 (24%), Positives = 106/258 (41%)
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
RG T+ + D+ + ++ ++ I E C + V + +N +A E
Sbjct: 800 RGFTLGVEDILVKPNA---DVMRQRII----EESTQCGPRA--VRAALNLPEAASCDEIQ 850
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK----DNSLLAMFKAGSK 733
Q HL +++ + + H +I +G +N+L M ++G+K
Sbjct: 851 GKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAK 910
Query: 734 GNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY--IPSA--VV 789
G+ + +Q S LG L R P ++ +G + C + Y P A V
Sbjct: 911 GSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKSLPCFEPYEFTPRAGGFV 958
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNA 846
FLTG+ P E F H + R+ D A G L R ++ + L YD TVR++
Sbjct: 959 TGRFLTGIRPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDS 1017
Query: 847 YGNQIVQFSYNIEGTSTP 864
G+ +VQF Y +G P
Sbjct: 1018 DGS-VVQFLYGEDGLDIP 1034
Score = 112 (44.5 bits), Expect = 5.1e-29, Sum P(6) = 5.1e-29
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1589 EVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1648
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1649 VYKPLNRFGI------QSSSSPLQQMTFET-SFQFLKQATMMGSHDELKSPSACLVVGKV 1701
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1702 VKGGTG 1707
Score = 110 (43.8 bits), Expect = 5.1e-29, Sum P(6) = 5.1e-29
Identities = 34/97 (35%), Positives = 44/97 (45%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I V + NP GL P + E CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I P T+ +P + LL C C
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 80 (33.2 bits), Expect = 5.1e-29, Sum P(6) = 5.1e-29
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR D R V+ D I EIGIP A +L + + WN + L I+ +
Sbjct: 439 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVH 498
Query: 376 KGELYVCRK-GGLVRIRRIDALELGDIIYRPLT 407
G V + G + +DA + + + LT
Sbjct: 499 PGASMVINEDGSRTALSAVDATQREAVAKQLLT 531
Score = 39 (18.8 bits), Expect = 9.6e-22, Sum P(6) = 9.6e-22
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 1338 LRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNS 1397
LR +LKK L + +G+ L + D I+ + + K + + H +Q
Sbjct: 1282 LRRVKSLKKQLTRVCLGEVLQKVD----IQESFCMGEKQNKFRVYELRFQFLPHAYYQQE 1337
Query: 1398 RC 1399
+C
Sbjct: 1338 KC 1339
Score = 38 (18.4 bits), Expect = 2.9e-20, Sum P(6) = 2.9e-20
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 655 NFQQLMVDSHMNFLMSAKDSEST-RSLQGEHLSYEKQRSAALSQASVDAF 703
N++ +M H++ ++S D + R + + + SA L + + +F
Sbjct: 1050 NYEVIMKSKHLHEVLSRADPQKVLRHFRAIKKWHHRHSSALLRKGAFLSF 1099
Score = 37 (18.1 bits), Expect = 5.1e-29, Sum P(6) = 5.1e-29
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 205 CPHCKTGRSVVRKE 218
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 158 (60.7 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 31/96 (32%), Positives = 56/96 (58%)
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
+YR + +GD++++NR P++H S++A ++LP + ++ C+ ++ DFDGD ++ +
Sbjct: 593 VYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMH 652
Query: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
PQ+ AR E + D Q + SG L L QD
Sbjct: 653 FPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQD 688
Score = 122 (48.0 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 69/250 (27%), Positives = 110/250 (44%)
Query: 614 WLSVRGMTVSLSDLYLASHSCS--RKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSA 671
+ +RG T + DL L + R++L + +GL A + + L DS + L++A
Sbjct: 835 YAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASE---YVGLSTDSPIA-LLNA 890
Query: 672 KDSESTRS---LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMF 728
E R LQG + K + L+ + ++ K + L K+ N + M
Sbjct: 891 NLEEVYRDDEKLQGLDAAM-KGKMNGLTSSIIN--KCI---PDGLLTKFPY--NHMQTMT 942
Query: 729 KAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAV 788
+G+KG+ + + Q S LG Q L R P +S + + + AKS
Sbjct: 943 VSGAKGSNVNVSQISCLLG-QQELE--GRRVPLMVSGKSLPSFVPYETS--AKS---GGF 994
Query: 789 VENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNA 846
+ + FLTG+ P E + H + R+ G L R LM + LC YD TVR++
Sbjct: 995 IASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDS 1054
Query: 847 YGNQIVQFSY 856
G+ IVQF Y
Sbjct: 1055 DGS-IVQFHY 1063
Score = 107 (42.7 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 32/122 (26%), Positives = 54/122 (44%)
Query: 1138 HPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAK 1197
+ ++I + YG++A + + S G + P HL ++A+ ++ G + N
Sbjct: 1565 YTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRM 1624
Query: 1198 GLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHF 1257
G+ +SPF + F +AA G VD+L L G+V + GTG F
Sbjct: 1625 GIEYN------TSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGS-F 1677
Query: 1258 DI 1259
DI
Sbjct: 1678 DI 1679
Score = 105 (42.0 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 33/109 (30%), Positives = 47/109 (43%)
Query: 14 SGILTGISLGISTDTEKEKLSVMEIG---AVSEVTNPR------LGL-PNPTNE-CSSCG 62
S + + GI + EK+SV +I + + +P L L P N C++C
Sbjct: 8 SSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCH 67
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK 111
D + C GHFG I P HP F S + LL S C C + + K
Sbjct: 68 L-DERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVK 115
Score = 83 (34.3 bits), Expect = 1.2e-28, Sum P(5) = 1.2e-28
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR + R V++ DPNI+ EIG+P A +L E + +N+ +
Sbjct: 479 MMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEM 527
Score = 48 (22.0 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 934 HGFEY-GALEVKNHLECLMLSDIVSTSMIIYSPQTG 968
HG +Y + EV+NHL L + + V S + Y+ + G
Sbjct: 318 HGAKYMTSTEVRNHLRRLFVKENVVLSRL-YAHKRG 352
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 149 (57.5 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 38/155 (24%), Positives = 76/155 (49%)
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
+ R + +GD++++NR PS+H S++ +VL + +N C ++ DFDGD ++G+
Sbjct: 577 VLRHMKNGDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEMNGH 636
Query: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL-MEDS-VXXXXXXXXX 519
+ Q+ A+ E+ E+ + + + LL L QD + + LL + D +
Sbjct: 637 LVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHLV 696
Query: 520 XXXFCPH--RFLSPDIFKISKDSVWSGKQLFSMLL 552
F + R P + +W+GKQ+ + ++
Sbjct: 697 LASFAQYSKRIEIPPPTILYPKRLWTGKQVITTIV 731
Score = 136 (52.9 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 43/144 (29%), Positives = 67/144 (46%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N+L M ++G+KG+ + +Q S CLG Q L R ++ R D + A
Sbjct: 928 NALQLMIQSGAKGSAVNAIQISGCLG-QIELE--GKRMAVTIAGRTLPSFRCFDPSPRAG 984
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAY 839
YI + FLTG+NP E F H++ R+ G L R ++ + + Y
Sbjct: 985 GYI-----DQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHY 1039
Query: 840 DGTVRNAYGNQIVQFSYNIEGTST 863
D TVR+ G+ ++QF Y +G T
Sbjct: 1040 DSTVRDHDGS-VIQFRYGEDGMDT 1062
Score = 101 (40.6 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 34/131 (25%), Positives = 60/131 (45%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D++D + +++ YG++A + T + + + G + HL + A+ ++ TG
Sbjct: 1588 DVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTG 1647
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ N +G A+ SS SSP + F A +A G DN+ L G +P
Sbjct: 1648 QIQPFN-RG-AM----SSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALP 1701
Query: 1250 SVGTGGHFDII 1260
GTG FD++
Sbjct: 1702 RGGTGS-FDLL 1711
Score = 99 (39.9 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 37/140 (26%), Positives = 64/140 (45%)
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLH-- 284
P T N +V E S + + + LK+++ R R ++ + D +L
Sbjct: 379 PQTLNLRKVLEATETISAISLIMKGDTSAQLKELIANRVRGKTINAQMHDAYLQLQLRAN 438
Query: 285 --LDKSSRK-DSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
D+ K D + K I + GL + ++GKR + R V+T DP + + EI
Sbjct: 439 AIFDQDLNKGDRDSIAGIKQI-LEKKQGL--FRMHMMGKRVNFACRSVITPDPYLDIDEI 495
Query: 342 GIPCQVAERLQISERLNSWN 361
GIP A++L +E +N++N
Sbjct: 496 GIPDIFAKKLTFTEPVNAFN 515
Score = 90 (36.7 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 40/166 (24%), Positives = 71/166 (42%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P LG N + C +C +R C GH G I+ + +P LL C C +
Sbjct: 55 DPILGPDNTFDMCMTCNQYERH-CPGHMGHIQLAVPVFNPLLFQFTYNLLKGSCVHCHRL 113
Query: 106 RKERQKGAGSSRK---EQPRVCKYCVRNPA-QWYPRMRFKLSSKDLSGK--TAIIVEIDE 159
KG G + + Q R + V + A +R K+++ DL G + ++D
Sbjct: 114 TC---KGDGVNARMLLAQLRCFELGVEHVAFDLESILRDKIANADLFGDDDSKTFNDVDA 170
Query: 160 KLSK-KNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
+++ NK L + F + +NSV+ + +++ S+L K
Sbjct: 171 CIAQLANKPLSE----LTAFKSMPTKNSVQLKKDIITEFLRSHLFK 212
Score = 47 (21.6 bits), Expect = 4.1e-23, Sum P(5) = 4.1e-23
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 1337 VLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPD 1385
+LR++ A+KK H+ + Q++S + A + G++ PD
Sbjct: 1370 ILRVAQAIKKKYHEITDYQQMSHRTMRQGNMAAGIETGGTKNRGLQGPD 1418
Score = 45 (20.9 bits), Expect = 2.1e-19, Sum P(5) = 2.1e-19
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 848 GNQIVQFSYNIEGTSTP 864
GNQ+V+ ++ + T+TP
Sbjct: 857 GNQVVKTAFGLPDTATP 873
Score = 37 (18.1 bits), Expect = 1.3e-18, Sum P(5) = 1.3e-18
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLD 602
S +RD++G++ Q+ RY + +D
Sbjct: 1041 STVRDHDGSVIQF---RYGEDGMD 1061
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 159 (61.0 bits), Expect = 2.6e-28, Sum P(6) = 2.6e-28
Identities = 43/156 (27%), Positives = 76/156 (48%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
++ R + +GDI+L+NR P++H S+ A +LP V+ ++ C ++ DFDGD ++
Sbjct: 544 VVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNA 603
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 604 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 663
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLL 552
+ +F I K +W+GKQ+ S LL
Sbjct: 664 VYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLL 699
Score = 119 (46.9 bits), Expect = 2.6e-28, Sum P(6) = 2.6e-28
Identities = 46/151 (30%), Positives = 70/151 (46%)
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECA 780
+N+L M ++G+KG+ + +Q S LG L R P ++ +G + C
Sbjct: 898 ENNLQMMVQSGAKGSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKSLPCF 945
Query: 781 KSY--IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMR 833
+ Y P A V FLTG+ P E F H + R+ D A G L R ++ +
Sbjct: 946 EPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREG-LVDTAVKTSRSGYLQRCIIKHLE 1004
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
L YD TVR++ G+ +VQF Y +G P
Sbjct: 1005 GLVIQYDLTVRDSDGS-VVQFLYGEDGLDIP 1034
Score = 112 (44.5 bits), Expect = 2.6e-28, Sum P(6) = 2.6e-28
Identities = 37/126 (29%), Positives = 58/126 (46%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1589 EVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1648
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ LN G+ S SSP Q F F+K A G+ D L+ L GKV
Sbjct: 1649 VYKPLNRFGI------QSSSSPLQQMTFET-SFQFLKQATMMGSHDELKSPSACLVVGKV 1701
Query: 1249 PSVGTG 1254
GTG
Sbjct: 1702 VKGGTG 1707
Score = 110 (43.8 bits), Expect = 2.6e-28, Sum P(6) = 2.6e-28
Identities = 34/97 (35%), Positives = 44/97 (45%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA---VSEVTNPRL-GL------PNPTNE-CSSCGAKD 65
L GIS G+ + E +KLSV I V + NP GL P + E CS+C +D
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTC-VQD 70
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I P T+ +P + LL C C
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNC 107
Score = 80 (33.2 bits), Expect = 2.6e-28, Sum P(6) = 2.6e-28
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR D R V+ D I EIGIP A +L + + WN + L I+ +
Sbjct: 439 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVH 498
Query: 376 KGELYVCRK-GGLVRIRRIDALELGDIIYRPLT 407
G V + G + +DA + + + LT
Sbjct: 499 PGASMVINEDGSRTALSAVDATQREAVAKQLLT 531
Score = 39 (18.8 bits), Expect = 4.7e-21, Sum P(6) = 4.7e-21
Identities = 14/62 (22%), Positives = 26/62 (41%)
Query: 1338 LRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNS 1397
LR +LKK L + +G+ L + D I+ + + K + + H +Q
Sbjct: 1282 LRRVKSLKKQLTRVCLGEVLQKVD----IQESFCMGEKQNKFRVYELRFQFLPHAYYQQE 1337
Query: 1398 RC 1399
+C
Sbjct: 1338 KC 1339
Score = 38 (18.4 bits), Expect = 2.9e-20, Sum P(6) = 2.9e-20
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 655 NFQQLMVDSHMNFLMSAKDSEST-RSLQGEHLSYEKQRSAALSQASVDAF 703
N++ +M H++ ++S D + R + + + SA L + + +F
Sbjct: 1050 NYEVIMKSKHLHEVLSRADPQKVLRHFRAIKKWHHRHSSALLRKGAFLSF 1099
Score = 37 (18.1 bits), Expect = 2.6e-28, Sum P(6) = 2.6e-28
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 205 CPHCKTGRSVVRKE 218
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 173 (66.0 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCL 458
G ++R + DGDIVL+NR P++H SL+A V+VL + ++ CS ++ DFDGD +
Sbjct: 549 GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEM 608
Query: 459 HGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
+ + PQ +R E +V + Q +G L +L QD + ++ LL
Sbjct: 609 NVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLL 655
Score = 106 (42.4 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 58/200 (29%), Positives = 86/200 (43%)
Query: 673 DSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD--NSLLA--MF 728
D + RS + E + YE SA AS+D I N + SK N LL+ +
Sbjct: 881 DPQDMRS-RIERILYEDGESAL---ASLDR------SIVNYLNQCSSKGVMNDLLSDGLL 930
Query: 729 KAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF-PHELSCAAWNRLRAGDNTECAK--SYIP 785
K + N + L+ S G + + +S +L R+ +G C + P
Sbjct: 931 KTPGR-NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSP 989
Query: 786 SA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYD 840
A + + FL+GL P E + H + R+ D A G L R LM + L YD
Sbjct: 990 RAGGFISDRFLSGLRPQEYYFHCMAGREG-LVDTAVKTSRSGYLQRCLMKNLESLKVNYD 1048
Query: 841 GTVRNAYGNQIVQFSYNIEG 860
TVR+A G+ I+QF Y +G
Sbjct: 1049 CTVRDADGS-IIQFQYGEDG 1067
Score = 104 (41.7 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 49/162 (30%), Positives = 72/162 (44%)
Query: 214 FILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDN-----WTRHL-KKMVDYRGRD 267
F+ S P K P T V E P K + +N T L + V +R R+
Sbjct: 342 FLESVLVPPTKFRPPTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQSKVIFRWRN 401
Query: 268 IELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
++ S V L SK +S R DS+ + Q + GL + ++GKR + R
Sbjct: 402 LQESVNV---LFDSKTATVQSQR-DSSGICQL----LEKKEGL--FRQKMMGKRVNHACR 451
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
V++ DP I + +IGIP A +L ER+ WN E+L I
Sbjct: 452 SVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAI 493
Score = 101 (40.6 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 42/167 (25%), Positives = 68/167 (40%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI-- 105
+LG + C+SCG + AC GH G I+ F I HP + + L C C
Sbjct: 69 KLGPKDDKQACNSCGQL-KLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMA 127
Query: 106 RKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN 165
+ E + A S K + K + + Q K S D S ++ + + E+ ++
Sbjct: 128 KPEDVERAVSQLK---LIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEEC--ED 182
Query: 166 KKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIRE 212
+ D W + F E +V N LS K S K ++P + +
Sbjct: 183 SDVEDQRWTSLQF---AEVTAVLKNFMRLSSKSCSRC-KGINPKLEK 225
Score = 82 (33.9 bits), Expect = 7.6e-28, Sum P(5) = 7.6e-28
Identities = 25/134 (18%), Positives = 59/134 (44%)
Query: 1127 QIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLS 1186
+ D +D + ++I +G++A + + + G ++ HL ++A+ ++
Sbjct: 1538 EFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMT 1597
Query: 1187 ATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWG 1246
+G + ++ G + +SPF + F ++AA G D L+ + G
Sbjct: 1598 FSGGYRPMSRMGGIAES-----TSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLG 1652
Query: 1247 KVPSVGTGGHFDII 1260
+P++ G FD++
Sbjct: 1653 -LPALSGTGCFDLM 1665
Score = 44 (20.5 bits), Expect = 5.7e-18, Sum P(4) = 5.7e-18
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1385 DIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGAL 1422
D++V P+ SR ++ EDG S + ++ L
Sbjct: 875 DVDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYL 912
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 207 (77.9 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 77/290 (26%), Positives = 127/290 (43%)
Query: 285 LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIP 344
LD + ++ K I I SGL I+ ++GKR + R V+T DPNI + EIGIP
Sbjct: 385 LDVNMSREMKSGEGLKQI-IEKKSGL--IRSHMMGKRVNYAARTVITPDPNINVDEIGIP 441
Query: 345 CQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID--------- 394
A++L + WN L + ++ + G Y+ K G D
Sbjct: 442 DIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLA 501
Query: 395 ALELGD------IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSP 448
L L + I++R + +GD++L+NR PS+H S++ ++L ++ C
Sbjct: 502 KLLLSNPKDGIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKA 561
Query: 449 FHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS-LTAAHLLME 507
++ DFDGD ++ + PQ+ AR E LV + + + G L L QD ++ L +
Sbjct: 562 YNADFDGDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIR 621
Query: 508 DSVXXXXXXXXXXXXFCPH-----RFLSPDIFKISKDSVWSGKQLFSMLL 552
+ L P I K + +WSGKQ+ S ++
Sbjct: 622 GRFFNREDYQQLVFQGLSQLKKDIKLLPPTILKPAV--LWSGKQILSTII 669
Score = 112 (44.5 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190
++D R + ++I + YGI+A Q + + + G + HL ++A+ ++ G
Sbjct: 1516 ILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGT 1575
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKA-GAVDNLQGSVDALGWGKVP 1249
F L+ KG+ +HSS SP Q F + F+K+A G D L L G
Sbjct: 1576 FQPLSRKGM----EHSS--SPLQQMSFES-SLQFLKSAAGFGRADELSSPSSRLMVGLPV 1628
Query: 1250 SVGTGGHFDII 1260
GTG F+++
Sbjct: 1629 RNGTGA-FELL 1638
Score = 109 (43.4 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 43/152 (28%), Positives = 70/152 (46%)
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
+ L K+ S N+L M +G+KG+++ +Q S LG Q L R P +S +
Sbjct: 861 RGLITKFPS--NNLQLMVLSGAKGSMVNTMQISCLLG-QIELE--GKRPPLMISGKSLPS 915
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRL 828
+ + + KS ++ F+TG+ P + F H + R+ G L R L
Sbjct: 916 FTSFETSP--KS---GGFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCL 970
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + L YD TVR++ N +VQF Y +G
Sbjct: 971 IKHLEGLSVHYDLTVRDS-DNSVVQFLYGEDG 1001
Score = 78 (32.5 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 25/95 (26%), Positives = 44/95 (46%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEVTNPRLG--LPNPTNE--------CSS-CGAKDR-K 67
+ + TD E KLSV+++ ++ +T LG +P + C CG + +
Sbjct: 16 LEFAVFTDQEIRKLSVVKV--ITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTCLKLQ 73
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GH G I+ + +P+F+ + +LL C C
Sbjct: 74 DCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHC 108
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 166 (63.5 bits), Expect = 2.6e-26, Sum P(5) = 2.6e-26
Identities = 47/166 (28%), Positives = 79/166 (47%)
Query: 398 LGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDC 457
+G +YR + + D+V++NR P++H S++ V+VLP + ++ ++ DFDGD
Sbjct: 555 VGKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDE 614
Query: 458 LHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXX 517
++ + PQ AR E L D Q + SG L L QD ++A L
Sbjct: 615 MNMHFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETY 674
Query: 518 XXXXXFC--P---H----RFLS--PDIFKISKDSVWSGKQLFSMLL 552
C P H R ++ P I+K + +W+GKQ+ + +L
Sbjct: 675 QQLIYGCIRPEDGHTSKNRIVTVPPAIYK--PEMLWTGKQVITTVL 718
Score = 109 (43.4 bits), Expect = 2.6e-26, Sum P(5) = 2.6e-26
Identities = 30/98 (30%), Positives = 44/98 (44%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLP-NP-----------TNECSSCGAK 64
+T + G+ +D E KLS +I + + LG P N N C++CG
Sbjct: 11 ITSVDFGVLSDEEIRKLSAKQI--TNPIVFDNLGHPINGGLYDLSLGAFLRNVCTTCGL- 67
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
D K C GH G I+ P + +P F + + L S C C
Sbjct: 68 DEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYC 105
Score = 96 (38.9 bits), Expect = 2.6e-26, Sum P(5) = 2.6e-26
Identities = 38/144 (26%), Positives = 63/144 (43%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
NS+ AM +G+KG+ + + Q +CL Q +L R P +S + + A
Sbjct: 905 NSMQAMALSGAKGSNVNVSQ-IMCLLGQQALE--GRRVPVMVSGKTLPSFKPFETDARAG 961
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAY 839
YI + F +G+ P E + H + R+ G L R L + + +Y
Sbjct: 962 GYI-----KQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSY 1016
Query: 840 DGTVRNAYGNQIVQFSYNIEGTST 863
D +VR+A G ++QF Y + T
Sbjct: 1017 DNSVRDADGT-LIQFLYGGDAVDT 1039
Score = 93 (37.8 bits), Expect = 2.6e-26, Sum P(5) = 2.6e-26
Identities = 27/130 (20%), Positives = 57/130 (43%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I+ +++ + YG++A + + G ++ HL ++A+ ++ G
Sbjct: 1536 DFINVNGITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREG 1595
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
++ N +G+ S +S F++ + KA G + L+ + GK+
Sbjct: 1596 TYLAFNRQGI------DSSTSAFMKMSYETTCQFLTKAVLDGDREELESPSAKIVMGKLS 1649
Query: 1250 SVGTGGHFDI 1259
+VGTG FD+
Sbjct: 1650 NVGTGS-FDV 1658
Score = 87 (35.7 bits), Expect = 2.6e-26, Sum P(5) = 2.6e-26
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++GKR + R V++ DPN++ EIG+P A++L E + S+N L
Sbjct: 455 MMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEPVTSYNASEL 503
Score = 39 (18.8 bits), Expect = 1.4e-20, Sum P(5) = 1.4e-20
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 677 TRSLQGEHLSYE 688
T+ L+G H+SY+
Sbjct: 1006 TKQLEGVHVSYD 1017
Score = 39 (18.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 791 NSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYG 848
N+F+T N + FI S ++++ N + L ++ F + + G N
Sbjct: 409 NAFVTLQNDVNAFIDSTKNQNAPAGKIPNPGIKQALEKKEGLFRKHMM----GKRVNYAA 464
Query: 849 NQIVQFSYNIEGTSTPTGEIGDQPV 873
++ N+E T EIG PV
Sbjct: 465 RSVISPDPNLE-----TNEIGVPPV 484
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 269 (99.8 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 61/196 (31%), Positives = 112/196 (57%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 350 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 409
Query: 373 LLE-KGELYVCRKGG-LVRIR----RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G + +R D L+ G + R + DGDIV+ NR P++H S+
Sbjct: 410 NSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 470 MGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTP 528
Query: 486 QSGRNLLSLGQDSLTA 501
QS R ++ + QD+LTA
Sbjct: 529 QSNRPVMGIVQDTLTA 544
Score = 99 (39.9 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 31/105 (29%), Positives = 47/105 (44%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA-VSEVTN---PRLG-LPNP-------TNECSS 60
P + + G+ + E +++SV E G E T P+LG L +P T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C A + C GHFG I+ + H FL K+L +C C +
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 117
Score = 42 (19.8 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 109 RQKGAGSSRKEQPRVCKYCVRNPAQW 134
++KG G + QPR+ + + A+W
Sbjct: 177 KEKGHGGCGRYQPRIRRSGLELYAEW 202
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 189 (71.6 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 134/567 (23%), Positives = 226/567 (39%)
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS-VVTINPLCCSPFHGDFDGDCLHG 460
+YR L GD VL NR P++H ++ VKVL + + ++ CS ++ DFDGD ++
Sbjct: 542 VYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNI 601
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS-LTAAHLLMEDSVXXXXXXXXX 519
+ PQ++ A E+ E+ A + Q + ++G L L QD LT L D++
Sbjct: 602 HFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAI 661
Query: 520 XXXFC-----PHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS 574
C H ++P + +WSGKQL S L + T + + I
Sbjct: 662 LYASCWSVNTKHPIVTPPPCILKPVPLWSGKQLISAALN---QLTIGRAPLNLEAPSKIP 718
Query: 575 AEGSSW-LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
+ W + E ++I R + V L + G+ + +LY +
Sbjct: 719 TK--MWGTKGLEITRDSHVIIRQNEMVAGILDKGHFGASSY----GLVHTCYELYDPDVA 772
Query: 634 CSRKILMDEIFYGLREAQD-TCNFQQLMVDS-----HMNFLMSAKDSESTRSLQGEHLS- 686
S L+ +F +++ TC L++ + + L A + T + + LS
Sbjct: 773 GSLLTLLGRMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLSK 832
Query: 687 YEKQRSAALSQASVDAFKHVFWDIQNLAYK----YGSKD-NSLL--AMFKAGSKGNLLKL 739
Y++Q++ ++ + + V + L K Y SK ++L+ K K N L
Sbjct: 833 YDEQKARDFFSKALQSEREVA-RLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNF-SL 890
Query: 740 VQHSLCLGLQHSLAPLSFRF-PHELSCAAWNRLRAGDNTECAKSYIPSA----VVENSFL 794
+ S G + + +S EL R+ +G ++Y SA V + FL
Sbjct: 891 MTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFL 950
Query: 795 TGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGN----- 849
TG+ P + F H + R+ D A T R + R L +G + Y N
Sbjct: 951 TGVRPQDYFFHCMAGREGLI-DTA----VKTSRSGYLQRCLIKHLEG-LSVQYDNTVRES 1004
Query: 850 --QIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNV 907
++QF+Y + EIG P L+ I Y + + L + V
Sbjct: 1005 DGSVIQFNYGEDSL-----EIGKTPY--LTKFPIIAENYELFKSQFPMEQLIEQLKNQEV 1057
Query: 908 LECG-SKKSNA--DQTMSLFL-SNKLG 930
+E S K+ D MS F S+ LG
Sbjct: 1058 VEYNRSIKTQPELDPVMSKFNPSSDLG 1084
Score = 107 (42.7 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 40/161 (24%), Positives = 80/161 (49%)
Query: 219 DAPFLKCFPVTP------N--NHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDY-RGRDIE 269
D+ F++ FPVTP N N R +E P SH K + N + +++ +D G+
Sbjct: 334 DSLFMRVFPVTPARYRPPNFVNGRRSEHPQN-SHYKGMVKSN--KMIRQSIDAGEGKAKF 390
Query: 270 LSHLVQDC-LKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
L + V D + ++ ++ + S ++ EV + GL + ++GKR + R
Sbjct: 391 LVNSVCDLQMHVNNMYDNSKSNSNTNEVANGIKQILEKKEGL--FRKHMMGKRVNYAART 448
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
V++ D +++ E+G+P A+ L + + S+N+ +L+ +
Sbjct: 449 VISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAV 489
Score = 95 (38.5 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 29/97 (29%), Positives = 41/97 (42%)
Query: 17 LTGISLGISTDTEKEKLSVMEI----------GAV-SEVTNPRLGLPNPTNECSSCGAKD 65
++ +S T + KLSV +I G V + +P LG P C++C D
Sbjct: 13 ISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATCSL-D 71
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GHFG I+ +P I KLL + C C
Sbjct: 72 FIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHC 108
Score = 90 (36.7 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 32/155 (20%), Positives = 70/155 (45%)
Query: 1108 MSGQCHITSLWSALMN--DCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESA 1165
+ G+ H S+ S +N + ++ D + + ++I + YG++A Q + + +
Sbjct: 1465 VGGKTHY-SIQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNV 1523
Query: 1166 ISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFI 1225
+ G ++ HL+++ + ++ G + LN G+ + +SPF + F +
Sbjct: 1524 FAAYGISVDKRHLILLGDYMTFEGGYRALNRIGI------ENNTSPFQKMSFETTFSFLS 1577
Query: 1226 KAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260
KA+ G D + + G++ GTG F I+
Sbjct: 1578 KASLMGDYDTVTSPSSRIVLGQIVKNGTGS-FTIV 1611
Score = 41 (19.5 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 21/66 (31%), Positives = 29/66 (43%)
Query: 1288 EKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKSW-TYNDVLRLSNALKK 1346
E LK +G AKF D L D E +R K+ + +V RL LKK
Sbjct: 811 ETLKKANEEGYT---VAAKFAD-----LSKYD-EQKARDFFSKALQSEREVARLDGLLKK 861
Query: 1347 ILHKYS 1352
L++Y+
Sbjct: 862 GLNQYT 867
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(4) = 0.00041
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1407 GSIEDFSYHKCVIGALEI 1424
GS+ +FS C++G E+
Sbjct: 898 GSVVNFSQVSCLLGQQEL 915
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 164 (62.8 bits), Expect = 2.4e-22, Sum P(6) = 2.4e-22
Identities = 50/169 (29%), Positives = 77/169 (45%)
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
+YR + + D+VL+NR P++H S++ V+VLP + ++ ++ DFDGD ++ +
Sbjct: 577 VYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMH 636
Query: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVXXXXXXXXXXX 521
PQ AR E L D Q + SG + L QD ++A L
Sbjct: 637 FPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYI 696
Query: 522 XFC--P---HRF------LSPDIFKISKDSVWSGKQLFSMLL----PPD 555
C P H L P IFK +W+GKQ+ + +L PPD
Sbjct: 697 YGCIRPEDGHTTRSKIVTLPPTIFK--PYPLWTGKQIITTVLLNVTPPD 743
Score = 96 (38.9 bits), Expect = 2.4e-22, Sum P(6) = 2.4e-22
Identities = 37/137 (27%), Positives = 61/137 (44%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
NS+ AM +G+KG+ + + Q +CL Q +L R P +S + + A
Sbjct: 923 NSMQAMALSGAKGSNVNVSQ-IMCLLGQQALE--GRRVPVMVSGKTLPSFKPYETDAMAG 979
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAY 839
Y V+ F +G+ P E + H + R+ G L R L + + +Y
Sbjct: 980 GY-----VKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSY 1034
Query: 840 DGTVRNAYGNQIVQFSY 856
D ++R+A G +VQF Y
Sbjct: 1035 DNSIRDADGT-LVQFMY 1050
Score = 91 (37.1 bits), Expect = 2.4e-22, Sum P(6) = 2.4e-22
Identities = 31/102 (30%), Positives = 42/102 (41%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNP------------TNECSSCGAK 64
+T + GI T E LS +I + + N LG P N CS+CG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDN--LGHPVSGGLYDLALGAFLRNLCSTCGL- 67
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
D K C GH G I+ P +P F + + L + C C R
Sbjct: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFR 109
Score = 83 (34.3 bits), Expect = 2.4e-22, Sum P(6) = 2.4e-22
Identities = 25/121 (20%), Positives = 55/121 (45%)
Query: 1140 DNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGL 1199
+++ + YG++A + + + S ++ HL ++A+ ++ G ++ N +G+
Sbjct: 1544 NDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM 1603
Query: 1200 ALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDI 1259
+S SS F++ + KA + L + GK+ +VGTG FD+
Sbjct: 1604 -----ETSTSS-FMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGS-FDV 1656
Query: 1260 I 1260
+
Sbjct: 1657 L 1657
Score = 82 (33.9 bits), Expect = 2.4e-22, Sum P(6) = 2.4e-22
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWN 361
++GKR + R V++ DPNI+ EIG+P A +L E + ++N
Sbjct: 471 MMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYN 515
Score = 40 (19.1 bits), Expect = 2.4e-22, Sum P(6) = 2.4e-22
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 992 LKEHSIIDSLYRQCKAARTELKISVPDML--ISNKDCSSINMQKECND 1037
L E +I+ + +Q + ++ ++VP + ++N +S ++++ ND
Sbjct: 1324 LLEAAIVKEIKKQKRTTGPDIGVAVPRLQTDVANSSSNSKRLEED-ND 1370
Score = 39 (18.8 bits), Expect = 9.7e-17, Sum P(6) = 9.7e-17
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 677 TRSLQGEHLSYE 688
T+ L+G H+SY+
Sbjct: 1024 TKQLEGVHVSYD 1035
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 159 (61.0 bits), Expect = 8.1e-15, Sum P(5) = 8.1e-15
Identities = 43/156 (27%), Positives = 76/156 (48%)
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
++ R + +GDI+L+NR P++H S+ A +LP V+ ++ C ++ DFDGD ++
Sbjct: 565 VVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNA 624
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA-AHLLMEDSVXXXXXXXXX 519
+ PQ+ R E L D+Q + + G+ L L QD + + A++ +
Sbjct: 625 HFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 684
Query: 520 XXXFCPHRFLSPDIFK--ISKD-SVWSGKQLFSMLL 552
+ +F I K +W+GKQ+ S LL
Sbjct: 685 VYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLL 720
Score = 89 (36.4 bits), Expect = 8.1e-15, Sum P(5) = 8.1e-15
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 49 LGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
LG + CS+C +D C GH G I P T+ +P + LL C C
Sbjct: 76 LGPADSKEVCSTC-VQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNC 128
Score = 80 (33.2 bits), Expect = 8.1e-15, Sum P(5) = 8.1e-15
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR D R V+ D I EIGIP A +L + + WN + L I+ +
Sbjct: 460 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVH 519
Query: 376 KGELYVCRK-GGLVRIRRIDALELGDIIYRPLT 407
G V + G + +DA + + + LT
Sbjct: 520 PGASMVINEDGSRTALSAVDATQREAVAKQLLT 552
Score = 59 (25.8 bits), Expect = 8.1e-15, Sum P(5) = 8.1e-15
Identities = 41/190 (21%), Positives = 74/190 (38%)
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
RG T+ + D+ + ++ ++ I E C + V + +N +A E
Sbjct: 821 RGFTLGVEDILVKPNA---DVMRQRII----EESTQCGPRA--VRAALNLPEAASCDEIQ 871
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK----DNSLLAMFKAGSK 733
Q HL +++ + + H +I +G +N+L M ++G+K
Sbjct: 872 GKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAK 931
Query: 734 GNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY--IPSA--VV 789
G+ + +Q S LG L R P ++ +G + C + Y P A V
Sbjct: 932 GSTVNTMQISCLLGQ----IELEGRRPPLMA--------SGKSLPCFEPYEFTPRAGGFV 979
Query: 790 ENSFLTGLNP 799
FLTG+ P
Sbjct: 980 TGRFLTGIRP 989
Score = 37 (18.1 bits), Expect = 8.1e-15, Sum P(5) = 8.1e-15
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 99 CPKCKT----IRKE 108
CP CKT +RKE
Sbjct: 226 CPHCKTGRSVVRKE 239
>TAIR|locus:504956149 [details] [associations]
symbol:AT1G45230 "AT1G45230" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] InterPro:IPR015801 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0005507 GO:GO:0048038
GO:GO:0009308 Gene3D:3.10.450.40 EMBL:AC083835 InterPro:IPR021602
Pfam:PF11523 EMBL:AY128277 EMBL:BT014877 EMBL:AK220622
IPI:IPI00534712 PIR:C96510 RefSeq:NP_683398.1 UniGene:At.38718
ProteinModelPortal:Q9C642 SMR:Q9C642 PaxDb:Q9C642 PRIDE:Q9C642
EnsemblPlants:AT1G45230.1 GeneID:841096 KEGG:ath:AT1G45230
TAIR:At1g45230 eggNOG:NOG257121 HOGENOM:HOG000005673
InParanoid:Q9C642 OMA:CIKGLIK PhylomeDB:Q9C642
ProtClustDB:CLSN2915113 Genevestigator:Q9C642 Uniprot:Q9C642
Length = 219
Score = 161 (61.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 1344 LKKILH--KYSIGQRLSEKDKTTVIRALY-FHPRRNEKLGIEPPDIEVTYHPEHQNSRCF 1400
++ ILH KY+ RLS + + T+I L +HP +K+G I V +HP+ ++SRC
Sbjct: 115 VRMILHSGKYANRDRLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCM 174
Query: 1401 SLVREDGSIEDFSYHKCVIGALEIIAPEKAEIY 1433
+VR+DG + DFSY KC+ G ++ P A+ +
Sbjct: 175 FIVRKDGEVVDFSYWKCIKGLIKKKYPLYADSF 207
>TAIR|locus:2075190 [details] [associations]
symbol:AT3G46630 "AT3G46630" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042631 "cellular response to water
deprivation" evidence=RCA] InterPro:IPR015801 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005507 GO:GO:0048038
GO:GO:0009308 Gene3D:3.10.450.40 EMBL:AL133314 InterPro:IPR021602
Pfam:PF11523 HOGENOM:HOG000005673 EMBL:AY086108 EMBL:BT005493
EMBL:AK118966 IPI:IPI00517277 PIR:T45600 RefSeq:NP_190247.1
UniGene:At.35903 ProteinModelPortal:Q9SNB5 SMR:Q9SNB5 STRING:Q9SNB5
PaxDb:Q9SNB5 PRIDE:Q9SNB5 EnsemblPlants:AT3G46630.1 GeneID:823816
KEGG:ath:AT3G46630 TAIR:At3g46630 eggNOG:NOG311427
InParanoid:Q9SNB5 OMA:VDRHPQF PhylomeDB:Q9SNB5
ProtClustDB:CLSN2685120 ArrayExpress:Q9SNB5 Genevestigator:Q9SNB5
Uniprot:Q9SNB5
Length = 207
Score = 156 (60.0 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 40/108 (37%), Positives = 59/108 (54%)
Query: 1336 DVLRLSNALKKILH--KYSIGQRLSEKDKTTVIRALY-FHPRRNEKLGIEPPDIEVTYHP 1392
D+ +S K+ILH +Y G+RL +D+ V+ L +HP +K+G I V HP
Sbjct: 97 DIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHP 156
Query: 1393 EHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIY-RAKWKR 1439
+ ++SRC +VR DG DFSY KC+ + P AE + R +KR
Sbjct: 157 QFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIREHFKR 204
>UNIPROTKB|F1NJE0 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
ArrayExpress:F1NJE0 Uniprot:F1NJE0
Length = 917
Score = 121 (47.7 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 39/131 (29%), Positives = 62/131 (47%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D++D R + ++I + YGI++ L+ + ++ + G + P HL +VA+ + G
Sbjct: 790 DILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEG 849
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ +N G+ S SSP Q F F+K A GA D L+ L GKV
Sbjct: 850 VYKPMNRFGI------QSSSSPLQQMTFET-SYKFLKEATMMGAHDELRSPSACLVLGKV 902
Query: 1249 PSVGTGGHFDI 1259
GTG FD+
Sbjct: 903 VKGGTG-LFDL 912
Score = 117 (46.2 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 47/153 (30%), Positives = 71/153 (46%)
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECA 780
+N+L M ++G+KG+ + VQ S LG L R P ++ +G + C
Sbjct: 93 ENNLQLMVQSGAKGSTVNTVQISCLLGQ----IELEGRRPPLMA--------SGKSLPCF 140
Query: 781 KSY--IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRR--LMFF 831
+ Y PS+ V FLTG+ P E F H + R+ D A G L R ++
Sbjct: 141 QPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREG-LVDTAVKTSRSGYLQRNRCIIKH 199
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
+ L YD TVR++ G+ +VQF Y +G P
Sbjct: 200 LEGLVVQYDLTVRDSDGS-VVQFLYGEDGLDIP 231
Score = 60 (26.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 155 VEIDEKLSKKNK----KLPDDYWGFIPFDAQQEENSVKPNRKVL 194
VE++E L KNK +L + F+P++ +EE VKP R +L
Sbjct: 501 VELEESLHLKNKENSHRLYKIKFCFLPYEYYREEKCVKP-RDIL 543
Score = 42 (19.8 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 351 LQISERLNSWNWERLSVCISFRL 373
L+ E +N++N E VC+ F L
Sbjct: 65 LKFKEEVNNYNNEVNKVCMPFGL 87
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 125 (49.1 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 34/137 (24%), Positives = 67/137 (48%)
Query: 374 LEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
LE L K + R +A+ + DI+ + + VL+NR P++H + A VL
Sbjct: 385 LELRGLATTIKAAKKMVEREEAV-VWDILDEVIREHP-VLLNRAPTLHRLGIQAFE-PVL 441
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
+ ++PL C+ ++ DFDGD + ++P + A++E L+ +++ +G ++
Sbjct: 442 IEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIV 501
Query: 494 LGQDSLTAAHLLMEDSV 510
QD + + + D V
Sbjct: 502 PSQDVVLGLYYMTRDCV 518
Score = 65 (27.9 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 41/154 (26%), Positives = 68/154 (44%)
Query: 212 EEFILSKDAP---FLKCFPVTPNNHRVTEVP-----HAFSHEKKLF--FDNWTRHLKKMV 261
E F+ S + P L PV P + R VP A S L+ N LK+++
Sbjct: 225 EAFVQSGNKPEWMILTVLPVLPPDLRPL-VPLDGGRFATSDLNDLYRRVINRNNRLKRLL 283
Query: 262 DYRGRDIELSHLVQDCLKISKLHLDKSSRKDS---AEVRQKKNI-DISNSSGLRWIKDVV 317
D DI + + + + LD R + + R K++ D+ R+ +++
Sbjct: 284 DLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNL- 342
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
LGKR D R V+T P ++L + G+P ++A L
Sbjct: 343 LGKRVDYSGRSVITVGPYLRLHQCGLPKKMALEL 376
Score = 64 (27.6 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 33/136 (24%), Positives = 61/136 (44%)
Query: 901 LLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFE--YGALEVKNHLECLMLSDIVST 958
L N+K+V+ K + L L ++ G+ + ++ YGA+ K E + + V+
Sbjct: 960 LSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVAN 1019
Query: 959 ----SMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQC--KAARTEL 1012
+M + + +G ++ F+ I + ++ + TGL ++DS R K R L
Sbjct: 1020 WDPHTMPVITEVSGFVR-FTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL 1078
Query: 1013 KI---SVPDMLISNKD 1025
KI D+LI D
Sbjct: 1079 KIVDAQGNDVLIPGTD 1094
Score = 58 (25.5 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 29/81 (35%), Positives = 37/81 (45%)
Query: 766 AAWNRLRAGDNTECAK---SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---D 819
AA R AG AK S I + + N F GLN L+ FI + +R +D A
Sbjct: 734 AAQIRQLAGMRGLMAKPDGSIIETPITAN-FREGLNVLQYFISTHGAR-KGLADTALKTA 791
Query: 820 LPGTLTRRLMFFMRDLCTAYD 840
G LTRRL+ +DL D
Sbjct: 792 NSGYLTRRLVDVAQDLVVTED 812
Score = 57 (25.1 bits), Expect = 1.6e-08, Sum P(5) = 1.6e-08
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 1170 GKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAF-FSNPGASFIKAA 1228
G+ + + I L A G+ ++ L K S + F+ A F +AA
Sbjct: 1277 GEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA 1336
Query: 1229 KAGAVDNLQGSVDALGWGKVPSVGTG 1254
AG D L+G + + G++ GTG
Sbjct: 1337 VAGKRDELRGLKENVIVGRLIPAGTG 1362
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 128 (50.1 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 29/114 (25%), Positives = 59/114 (51%)
Query: 397 ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
E+ DI+ + + I L+NR P++H + A VL + ++PL C+ ++ DFDGD
Sbjct: 407 EVWDILEEVIREHPI-LLNRAPTLHRLGIQAFE-PVLVEGKAIQLHPLVCTAYNADFDGD 464
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
+ ++P + A++E L+ +++ +G ++ QD + + + D V
Sbjct: 465 QMAVHVPLTLEAQLEARSLMMSTNNVLHPANGEPIIVPSQDVVLGLYYITRDRV 518
Score = 73 (30.8 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 252 NWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDS---AEVRQKKNI-D-ISN 306
N LK+++D DI + + + + LD R + + RQ K++ D I
Sbjct: 274 NRNNRLKRLLDLNAPDIIVRNEKRMLQEAVDALLDNGRRGRAILGSNRRQLKSLADMIKG 333
Query: 307 SSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
SG R+ +++ LGKR D R V+ P +KL + G+P ++A L
Sbjct: 334 KSG-RFRQNL-LGKRVDYSGRSVIVVGPTLKLHQAGLPKKMALEL 376
Score = 56 (24.8 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 30/85 (35%), Positives = 41/85 (48%)
Query: 766 AAWNRLRAGDNTECAK---SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---D 819
AA R AG A+ + I + + N F GLN L+ FI + +R +D A
Sbjct: 734 AAQTRQLAGMRGLMARPDGTIIETPITAN-FREGLNVLQYFISTHGAR-KGLADTALKTA 791
Query: 820 LPGTLTRRLMFFMRDLC-TAYD-GT 842
G LTRRL+ +DL T +D GT
Sbjct: 792 NSGYLTRRLVDVAQDLVVTEHDCGT 816
Score = 44 (20.5 bits), Expect = 3.9e-06, Sum P(4) = 3.9e-06
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 1204 KHSSVSSPFVQAF-FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
K S + F+ A F A+ AG D+L+G + + G++ GTG
Sbjct: 1310 KASLATESFISAASFQETTRVLTAASVAGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 1259 IIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQ 1296
++ GE R +K +D+++ + V+ EK+ V K +
Sbjct: 672 LVTHGERR--NKVIDIWSRTNDQVAKAMMEKIAVEKVK 707
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 122 (48.0 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 39/145 (26%), Positives = 68/145 (46%)
Query: 365 LSVCIS-FRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTD---GDIVLINRPPSI 420
L + I F+L +L R VRI + E I++ L + G VL+NR P++
Sbjct: 399 LEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTL 458
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H + A ++ + ++PL C F+ DFDGD + ++P ++ A+ E L+
Sbjct: 459 HRLGIQAFQPTLVE-GRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHM 517
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLL 505
L++ G + QD L ++L
Sbjct: 518 NLLSPAIGDPICVPTQDMLIGLYVL 542
Score = 71 (30.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 273 LVQDCLKISKLHLDKSSR----KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
LVQ+ + L LD SR +D K D+ R+ ++ +LGKR D R
Sbjct: 327 LVQEA--VDTL-LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRF-RETLLGKRVDYSGRS 382
Query: 329 VVTGDPNIKLKEIGIPCQVAERL 351
V+ P++ L + G+P ++A +L
Sbjct: 383 VIVVGPSLSLHQCGLPLEIAIKL 405
Score = 50 (22.7 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 58 CSSCGAK--DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
C CG + D + G+IK + H ++L + + ++ K
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDK 132
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 122 (48.0 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 39/145 (26%), Positives = 68/145 (46%)
Query: 365 LSVCIS-FRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTD---GDIVLINRPPSI 420
L + I F+L +L R VRI + E I++ L + G VL+NR P++
Sbjct: 399 LEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTL 458
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H + A ++ + ++PL C F+ DFDGD + ++P ++ A+ E L+
Sbjct: 459 HRLGIQAFQPTLVE-GRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHM 517
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLL 505
L++ G + QD L ++L
Sbjct: 518 NLLSPAIGDPICVPTQDMLIGLYVL 542
Score = 71 (30.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 273 LVQDCLKISKLHLDKSSR----KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
LVQ+ + L LD SR +D K D+ R+ ++ +LGKR D R
Sbjct: 327 LVQEA--VDTL-LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRF-RETLLGKRVDYSGRS 382
Query: 329 VVTGDPNIKLKEIGIPCQVAERL 351
V+ P++ L + G+P ++A +L
Sbjct: 383 VIVVGPSLSLHQCGLPLEIAIKL 405
Score = 50 (22.7 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 58 CSSCGAK--DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
C CG + D + G+IK + H ++L + + ++ K
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDK 132
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 122 (48.0 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 39/145 (26%), Positives = 68/145 (46%)
Query: 365 LSVCIS-FRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTD---GDIVLINRPPSI 420
L + I F+L +L R VRI + E I++ L + G VL+NR P++
Sbjct: 399 LEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTL 458
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H + A ++ + ++PL C F+ DFDGD + ++P ++ A+ E L+
Sbjct: 459 HRLGIQAFQPTLVE-GRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHM 517
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLL 505
L++ G + QD L ++L
Sbjct: 518 NLLSPAIGDPICVPTQDMLIGLYVL 542
Score = 71 (30.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 273 LVQDCLKISKLHLDKSSR----KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
LVQ+ + L LD SR +D K D+ R+ ++ +LGKR D R
Sbjct: 327 LVQEA--VDTL-LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRF-RETLLGKRVDYSGRS 382
Query: 329 VVTGDPNIKLKEIGIPCQVAERL 351
V+ P++ L + G+P ++A +L
Sbjct: 383 VIVVGPSLSLHQCGLPLEIAIKL 405
Score = 50 (22.7 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 58 CSSCGAK--DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
C CG + D + G+IK + H ++L + + ++ K
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDK 132
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 122 (48.0 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 39/145 (26%), Positives = 68/145 (46%)
Query: 365 LSVCIS-FRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTD---GDIVLINRPPSI 420
L + I F+L +L R VRI + E I++ L + G VL+NR P++
Sbjct: 399 LEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTL 458
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H + A ++ + ++PL C F+ DFDGD + ++P ++ A+ E L+
Sbjct: 459 HRLGIQAFQPTLVE-GRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHM 517
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLL 505
L++ G + QD L ++L
Sbjct: 518 NLLSPAIGDPICVPTQDMLIGLYVL 542
Score = 71 (30.1 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 273 LVQDCLKISKLHLDKSSR----KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
LVQ+ + L LD SR +D K D+ R+ ++ +LGKR D R
Sbjct: 327 LVQEA--VDTL-LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRF-RETLLGKRVDYSGRS 382
Query: 329 VVTGDPNIKLKEIGIPCQVAERL 351
V+ P++ L + G+P ++A +L
Sbjct: 383 VIVVGPSLSLHQCGLPLEIAIKL 405
Score = 50 (22.7 bits), Expect = 5.4e-06, Sum P(3) = 5.4e-06
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 58 CSSCGAK--DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
C CG + D + G+IK + H ++L + + ++ K
Sbjct: 87 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDK 132
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 129 (50.5 bits), Expect = 6.0e-06, Sum P(4) = 6.0e-06
Identities = 32/115 (27%), Positives = 63/115 (54%)
Query: 397 ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
E+ DI+ + + I L+NR P++H + A VL + ++PL CS F+ DFDGD
Sbjct: 408 EVWDILDEVIHEHPI-LLNRAPTLHRLGIQAFD-PVLIEGKAIQLHPLVCSAFNADFDGD 465
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL-MEDSV 510
+ +IP ++ A++E L+ +++ +G+ ++ +D + + L ++D V
Sbjct: 466 QMAVHIPLSLEAQLEARILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLTLQDQV 520
Score = 68 (29.0 bits), Expect = 6.0e-06, Sum P(4) = 6.0e-06
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 293 SAEVRQKKNI-DISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
+ V KK++ D+ R+ +++ LGKR D R V+ PN+KL + G+P ++A L
Sbjct: 319 AGSVGYKKSLSDMLKGKQGRFRQNL-LGKRVDYSGRSVIVVGPNLKLHQCGLPKKMALEL 377
Score = 56 (24.8 bits), Expect = 6.0e-06, Sum P(4) = 6.0e-06
Identities = 31/126 (24%), Positives = 56/126 (44%)
Query: 996 SIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSID 1055
SI+D +YR C + T ++ S M + K S + C D MI+ + K +D
Sbjct: 608 SIVDLVYRSCGQSET-VEFSDKLMSLGFKYASQSGISFGCKD------MIIPDTKTMHVD 660
Query: 1056 --LETIQMWVMPFL--LKTVVKGFREI-----KKVDILWKDKQKASKSHD--DSFGELYL 1104
E I+ + + + L T + + ++ K D++ KD KA +D +Y+
Sbjct: 661 NASEKIKEFAVQYQDGLITRSERYNKVIDEWSKCTDLIAKDMMKAISVYDVESKLNSIYM 720
Query: 1105 RVSMSG 1110
++ SG
Sbjct: 721 -MAHSG 725
Score = 46 (21.3 bits), Expect = 6.0e-06, Sum P(4) = 6.0e-06
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 1170 GKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAF-FSNPGASFIKAA 1228
G+NI E ++ + + G+ A L + S ++ FV A F +AA
Sbjct: 1273 GENIDMEEVIKTNDNMVKMGKSPAKYAPILQGITRASLDTNSFVSAASFQETTKVLTEAA 1332
Query: 1229 KAGAVDNLQGSVDALGWGKVPSVGTG 1254
+G D+L G + + G++ GTG
Sbjct: 1333 FSGKEDSLYGLKENVIVGRLIPAGTG 1358
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 131 (51.2 bits), Expect = 7.8e-06, Sum P(5) = 7.8e-06
Identities = 36/138 (26%), Positives = 66/138 (47%)
Query: 397 ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
E+ D++ + + + L NR P++H S+ A VL + ++PL C+ F+ DFDGD
Sbjct: 408 EVWDVLAKVIHQHPVFL-NRAPTLHRLSVQAFE-PVLIEGKAIQLHPLVCTAFNADFDGD 465
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL-MEDSVXXXXX 515
+ ++P +I A+VE LV ++N + R ++ +D + + L +E+
Sbjct: 466 QMSVHVPLSIEAQVEARLLVMSTNNVLNPANSRPIIVPSKDIVLGVYYLSLEEKGGVVHP 525
Query: 516 XXXXXXXFCPHRFLSPDI 533
H F + DI
Sbjct: 526 VTFCATWEAEHAFANGDI 543
Score = 57 (25.1 bits), Expect = 7.8e-06, Sum P(5) = 7.8e-06
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
+LGKR D R V+ P ++L + G+P ++A L
Sbjct: 343 LLGKRVDYSGRSVIVVGPALELHQCGLPKKIALEL 377
Score = 57 (25.1 bits), Expect = 7.8e-06, Sum P(5) = 7.8e-06
Identities = 22/76 (28%), Positives = 34/76 (44%)
Query: 1199 LALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFD 1258
L + R S A F +AA AG VD L+G + + G++ VG G D
Sbjct: 1290 LGITRASLQTESFISAASFQETTKVLTEAAVAGKVDRLRGLKENIIAGRLLPVGAGYFID 1349
Query: 1259 II---YSGE--GRTLS 1269
+ ++GE G+ +S
Sbjct: 1350 KLKREFTGERQGKQVS 1365
Score = 56 (24.8 bits), Expect = 7.8e-06, Sum P(5) = 7.8e-06
Identities = 43/159 (27%), Positives = 67/159 (42%)
Query: 784 IPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDL----- 835
IP+ ++ N G LE F +S +D A G LTRRL+ +D
Sbjct: 738 IPNPIISN-LREGQGVLEYF-NSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIIVEE 795
Query: 836 -CTAYDGTVRNAY---GNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQ 891
C + +G V A G I+ S +I + T +I D GS+ I A D+
Sbjct: 796 DCGSSNGLVVRATVEGGVVIIPLSDSIFSRVSAT-DIIDPSDGSV----IVRAGEMFDDK 850
Query: 892 PISLLETSPL--LNLKNVLECGSKKSNADQTMSLFLSNK 928
I +E+ + + +++VL C SK + LSN+
Sbjct: 851 SIERIESLGIDSVRIRSVLTCKSKHGICRKCYGADLSNR 889
Score = 39 (18.8 bits), Expect = 7.8e-06, Sum P(5) = 7.8e-06
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
Y+ ++ NS+ M ++G++G+ ++ Q + GL
Sbjct: 696 YESVAEMNSIFMMAQSGARGSAAQIKQLAGMRGL 729
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 129 (50.5 bits), Expect = 2.9e-05, Sum P(6) = 2.9e-05
Identities = 33/133 (24%), Positives = 70/133 (52%)
Query: 373 LLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
L+EKG + K +I R+ E+ D++ + + VL+NR P++H + A +
Sbjct: 374 LVEKGLAHNI-KSAKRKIERVQP-EVWDVLESVIKEHP-VLLNRAPTLHRLGIQAFEPTL 430
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
+ + ++PL C+ ++ DFDGD + ++P + A+ E L+ + ++N + G+ ++
Sbjct: 431 VE-GRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNILNPKDGKPVV 489
Query: 493 SLGQDSLTAAHLL 505
+ QD + + L
Sbjct: 490 TPSQDMVLGNYYL 502
Score = 62 (26.9 bits), Expect = 2.9e-05, Sum P(6) = 2.9e-05
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 789 VENSFLTGLNPLECFIHSVTSR----DSSFSDNADLPGTLTRRLMFFMRDLCTAYD--GT 842
+++SF GL LE FI + +R D++ AD G LTRRL+ +D+ D GT
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALK-TAD-SGYLTRRLVDVAQDVIVREDDCGT 820
Query: 843 VRNAY------GNQIVQFSYN 857
R GN++++ Y+
Sbjct: 821 DRGLLIGAIKEGNEVIESLYD 841
Score = 51 (23.0 bits), Expect = 2.9e-05, Sum P(6) = 2.9e-05
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 227 PVT-PNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDI 268
PVT P N + + H ++ F N L K VDY GR +
Sbjct: 304 PVTGPGNRPLKSLSHMLKGKQGRFRQNL---LGKRVDYSGRSV 343
Score = 48 (22.0 bits), Expect = 2.9e-05, Sum P(6) = 2.9e-05
Identities = 28/98 (28%), Positives = 40/98 (40%)
Query: 1166 ISDTGK-NILPEHLLIVANTLSATGEFVGLNAKGLALQR-------KHSSVSSPFVQAF- 1216
+SD G+ ++LP LL + A + + L K A R K S + F+ A
Sbjct: 1079 VSDAGETDVLPGTLLDIHQFTDANAKVL-LQGKQPATARPVLLGITKASLETDSFLSAAS 1137
Query: 1217 FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
F AA G D L G + + GK+ GTG
Sbjct: 1138 FQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTG 1175
Score = 41 (19.5 bits), Expect = 2.9e-05, Sum P(6) = 2.9e-05
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
IQ K +K N + M +G++GN Q + GL
Sbjct: 712 IQGKLMKSLNKRNPIFMMSDSGARGNASNFTQLAGMRGL 750
Score = 40 (19.1 bits), Expect = 2.9e-05, Sum P(6) = 2.9e-05
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 544 GKQLFSMLLPPDFEY 558
GK +F+ +LP F Y
Sbjct: 563 GKLIFNEILPESFPY 577
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 125 (49.1 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 397 ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
E+ DI+ + + VL+NR P++H + A +L + ++PL CS F+ DFDGD
Sbjct: 410 EVWDILDEVIREHP-VLLNRAPTLHRLGIQAFE-PILIEGKAIQLHPLVCSAFNADFDGD 467
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
+ ++P ++ A++E L+ +++ +G ++ QD + + L
Sbjct: 468 QMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYL 516
Score = 68 (29.0 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 252 NWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKD----SAEVRQKKNI-DISN 306
N LK++++ R DI + + + L+ S L + R+ A R K++ D+
Sbjct: 277 NRNNRLKRLIELRAPDIIVRN-EKRMLQESVDALFDNGRRGRVITGANKRPLKSLSDMLK 335
Query: 307 SSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
R+ +++ LGKR D R V+ P +KL + G+P ++A L
Sbjct: 336 GKQGRFRQNL-LGKRVDFSGRSVIVTGPELKLHQCGLPKKMALEL 379
Score = 50 (22.7 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 645 YGLREAQDTCNFQQLMV-DSHMNFLM-------SAKDSESTRSLQGEHLSYEKQRSAALS 696
Y ++E Q+ Q + + D H+ ++ DS T L+GEH+ +KQ A +
Sbjct: 1227 YMVKEVQEVYRLQGVKINDKHIEVIVRQMLQKWEISDSGDTTLLKGEHV--DKQEFDAAN 1284
Query: 697 QASV 700
+ ++
Sbjct: 1285 EKTI 1288
Score = 46 (21.3 bits), Expect = 5.7e-05, Sum P(4) = 5.7e-05
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 1187 ATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWG 1246
A+GE + L +LQ + S +S+ A F +A+ G D L G + + G
Sbjct: 1295 ASGEPILLGITKASLQTR-SFISA----ASFQETTRVLTEASVQGKKDKLVGLKENVIVG 1349
Query: 1247 KVPSVGTGG 1255
++ GTGG
Sbjct: 1350 RLIPAGTGG 1358
Score = 37 (18.1 bits), Expect = 0.00098, Sum P(4) = 0.00098
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 980 FHVRKEIMKRTGLKEHSIIDSLYRQC 1005
F + ++++ +++ +ID++YR C
Sbjct: 590 FELVNRLLRKKEVQQ--VIDTVYRYC 613
>UNIPROTKB|E1C4T2 [details] [associations]
symbol:POLR1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
Length = 745
Score = 121 (47.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 39/131 (29%), Positives = 62/131 (47%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D++D R + ++I + YGI++ L+ + ++ + G + P HL +VA+ + G
Sbjct: 618 DILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEG 677
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK-AAKAGAVDNLQGSVDALGWGKV 1248
+ +N G+ S SSP Q F F+K A GA D L+ L GKV
Sbjct: 678 VYKPMNRFGI------QSSSSPLQQMTFET-SYKFLKEATMMGAHDELRSPSACLVLGKV 730
Query: 1249 PSVGTGGHFDI 1259
GTG FD+
Sbjct: 731 VKGGTG-LFDL 740
Score = 60 (26.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 155 VEIDEKLSKKNK----KLPDDYWGFIPFDAQQEENSVKPNRKVL 194
VE++E L KNK +L + F+P++ +EE VKP R +L
Sbjct: 331 VELEESLHLKNKENSHRLYKIKFCFLPYEYYREEKCVKP-RDIL 373
Score = 57 (25.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
R ++ + L YD TVR++ G+ +VQF Y +G P
Sbjct: 24 RCIIKHLEGLVVQYDLTVRDSDGS-VVQFLYGEDGLDIP 61
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 122 (48.0 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 70/298 (23%), Positives = 128/298 (42%)
Query: 210 IREEFILSKDAP---FLKCFPVTPNNHRVTEVP-----HAFSHEKKLF--FDNWTRHLKK 259
+ E F S + P LK PV P + R VP A S L+ N LK+
Sbjct: 223 LMEAFHTSGNKPEWMILKVLPVLPPDLRPL-VPLDGGRFATSDLNDLYRRVINRNNRLKR 281
Query: 260 MVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLG 319
++D DI +V++ ++ + +D + D+ R+ + I SN L+ + D++ G
Sbjct: 282 LLDLAAPDI----IVRNEKRMLQESVD--ALLDNG--RRGRAITGSNKRPLKSLADMIKG 333
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGEL 379
K+ FR + G I RL E I +L +G L
Sbjct: 334 KQGR--FRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIYGKLEGRG-L 390
Query: 380 YVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVV 439
K + R + E+ D++ + + ++L NR P++H + A VL +
Sbjct: 391 ATTIKAAKKMVER-EVAEVWDVLDEVIREHPVML-NRAPTLHRLGIQAFE-PVLIEGKAI 447
Query: 440 TINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
++PL C+ ++ DFDGD + ++P + A++E L+ +++ +G +++ QD
Sbjct: 448 QLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPVITPSQD 505
Score = 61 (26.5 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 30/81 (37%), Positives = 38/81 (46%)
Query: 766 AAWNRLRAGDNTECAK---SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---D 819
AA R AG AK S I + +V N F GLN L+ FI + +R +D A
Sbjct: 734 AAQIRQLAGMRGLMAKPDGSIIETPIVAN-FREGLNVLQYFISTHGAR-KGLADTALKTA 791
Query: 820 LPGTLTRRLMFFMRDLCTAYD 840
G LTRRL+ +DL D
Sbjct: 792 NSGYLTRRLVDVAQDLVVIED 812
Score = 53 (23.7 bits), Expect = 0.00031, Sum P(3) = 0.00031
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 1204 KHSSVSSPFVQAF-FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYS 1262
K S + F+ A F +AA G DNL+G + + G++ GTG + +
Sbjct: 1311 KASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRN 1370
Query: 1263 GEGRTLSKPVDVYNLLSTPVSSKQN 1287
+PV V N + T ++QN
Sbjct: 1371 DARAKKDEPV-VVNKI-TASEAEQN 1393
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 124 (48.7 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 397 ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
E+ D++ + + VL+NR P++H + A VL + I+PL C+ ++ DFDGD
Sbjct: 396 EVWDVLEEVIKEHP-VLLNRAPTLHRLGIQAFE-PVLVEGRAIQIHPLVCTAYNADFDGD 453
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
+ ++P + A+ E L+ ++N + G+ ++ QD + ++ L
Sbjct: 454 QMAVHVPLSAEAQAEARLLMLSSHNILNPKDGKPVVVPTQDMVIGSYYL 502
Score = 62 (26.9 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
+LGKR D R V+ P +KL + G+P ++A L
Sbjct: 331 LLGKRVDYSGRSVIVVGPELKLHQCGLPKEMALEL 365
Score = 49 (22.3 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 25/97 (25%), Positives = 39/97 (40%)
Query: 1166 ISDTGK-NILPEHLLIVANTLSATGEFVGLNAKGLALQR------KHSSVSSPFVQAF-F 1217
I D+G ++LP L+ + + + K +R K S + F+ A F
Sbjct: 1041 IEDSGDTDLLPGSLVDIFEFEDENAKVIAKGGKPATAKRVLLGITKASLATDSFLSAASF 1100
Query: 1218 SNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
+AA G VD L G + + GK+ GTG
Sbjct: 1101 QETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTG 1137
Score = 42 (19.8 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
S+ N + M K+G++GN+ ++ Q + GL
Sbjct: 682 SQFNHVYMMAKSGARGNIQQIRQLAGMRGL 711
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 123 (48.4 bits), Expect = 0.00051, Sum P(4) = 0.00051
Identities = 30/100 (30%), Positives = 54/100 (54%)
Query: 412 VLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVE 471
+L+NR P++H L A VL + ++PL CS F+ DFDGD + ++P + A++E
Sbjct: 422 ILLNRAPTLHRLGLQAFD-PVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAQLE 480
Query: 472 LTELVALDKQLINQQSGRNLLSLGQDSLTAAH---LLMED 508
L+ +++ +GR ++ +D + + LL ED
Sbjct: 481 ARVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLTLLEED 520
Score = 63 (27.2 bits), Expect = 0.00051, Sum P(4) = 0.00051
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 288 SSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQV 347
SSR S ++ + + G R+ +++ LGKR D R V+ P++KL + G+P ++
Sbjct: 316 SSRVGSMGYKKSLSDMLKGKQG-RFRQNL-LGKRVDYSGRSVIVVGPSLKLHQCGLPKKM 373
Query: 348 AERL 351
A L
Sbjct: 374 ALEL 377
Score = 51 (23.0 bits), Expect = 0.00051, Sum P(4) = 0.00051
Identities = 30/126 (23%), Positives = 53/126 (42%)
Query: 996 SIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSID 1055
SI+D +YR C R ++ S M + K S + C D MI+ + K ++
Sbjct: 603 SIVDLVYRSC-GQRETVEFSDKLMYLGFKYASQSGISFGCKD------MIIPDTKAAHVE 655
Query: 1056 --LETIQMWVMPFLLKTVVKGFREIKKVD-------ILWKDKQKASKSHDDS--FGELYL 1104
E I+ + + + + K R K VD ++ +D KA D+ + +Y+
Sbjct: 656 DASEKIREFSIQYQDGLITKSERYNKVVDEWSKCTDLIARDMMKAISLCDEKGKYNSIYM 715
Query: 1105 RVSMSG 1110
+ SG
Sbjct: 716 MAN-SG 720
Score = 42 (19.8 bits), Expect = 0.00051, Sum P(4) = 0.00051
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1204 KHSSVSSPFVQAF-FSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
K S ++ F+ A F +AA AG D L G + + G++ GTG
Sbjct: 1302 KASLDTNSFISAASFQETTKVLTEAAFAGKEDPLYGLKENVIVGRLIPAGTG 1353
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1443 1431 0.00093 124 3 11 22 0.38 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 75
No. of states in DFA: 638 (68 KB)
Total size of DFA: 649 KB (2284 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 119.58u 0.09s 119.67t Elapsed: 00:00:05
Total cpu time: 119.61u 0.09s 119.70t Elapsed: 00:00:05
Start: Tue May 21 14:18:45 2013 End: Tue May 21 14:18:50 2013