BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000525
(1443 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359474043|ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 1780 bits (4610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/1501 (60%), Positives = 1122/1501 (74%), Gaps = 80/1501 (5%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS 60
MDN+F EE +VPSG+L GI +ST+ + EK+SVM+I AV+E+T+P+LG+PNP+ +CS+
Sbjct: 1 MDNDFLEEQ-QVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCST 59
Query: 61 CGAKDRKACEG---------------------------------HFGFIKFPFTILHPYF 87
CGAKD K CEG HFG IKFPFTILHPYF
Sbjct: 60 CGAKDTKKCEGAVRQVIQKLYLLMISCYLYFLEYAKLXLFIFLGHFGVIKFPFTILHPYF 119
Query: 88 LSDIAKLLNSICPKCKTIRK-ERQKGAGS-SRKEQPRVCKYCVRNPAQWYPRMRFKLSSK 145
L+++ ++LN ICP CK+ R+ + KGA S SR+ + + CKYC N WYP M+FK+SSK
Sbjct: 120 LTEVVQILNKICPGCKSTRQGQWVKGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSSK 179
Query: 146 DLSGKTAIIVEIDEKLSKKNKK------LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQV 199
DL KTAIIVE++EKL KK +K LP DYW FIP D QQEEN + PNR+VLS QV
Sbjct: 180 DLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQV 239
Query: 200 SYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKK 259
YLLKD+DP +EF+ D+ FL C PVTPNNHRVTE+ HA S+ + L FD +R KK
Sbjct: 240 HYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKK 299
Query: 260 MVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLG 319
+VD+RG ELS V DCLK SKL +KS+ KDSA S SGL+WIK+V+LG
Sbjct: 300 LVDFRGTANELSCRVLDCLKTSKLRSEKSTSKDSA----------SKMSGLKWIKEVLLG 349
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGEL 379
KR + FRM+V GDP ++L EIGIPC +AE L ISE LNSWNWE+++ + RLLEKG+
Sbjct: 350 KRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQT 409
Query: 380 YVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVV 439
YV RKG L +RR++ + GDIIYRPLTDGDIVLINRPPSIH HS+IAL+VKVLP++SVV
Sbjct: 410 YVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVV 469
Query: 440 TINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSL 499
+INPLCCSPF GDFDGDCLHGYIPQ++ +RVEL+ELVAL++QLIN+QSGRNLLSL QDSL
Sbjct: 470 SINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSL 529
Query: 500 TAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK--ISKDSVWSGKQLFSMLLPPDFE 557
+AAHL+MED VLL+ QMQQL+MFCP++ SP I K + VW+GKQLFSMLLPP F
Sbjct: 530 SAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFN 589
Query: 558 YTFPSKDVYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLS 616
Y FP V IS G+LI S++GS+WLRD +GNLF L+K + K LDFLYAAQEVLCEWLS
Sbjct: 590 YVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLS 649
Query: 617 VRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLM-SAKDSE 675
+RG++VSLSD+YL+S S SRK ++DE+F GL A+ TC+F+QL+VDS NFL+ S ++++
Sbjct: 650 MRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQ 709
Query: 676 STRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGN 735
+ + L YE+Q SAAL Q+SV AFK F DIQNL Y+Y +KDNSLLAM KAGSKGN
Sbjct: 710 NGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGN 769
Query: 736 LLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR-----LRAGDNTECAKSYIPSAVVE 790
LLKLVQ LCLGLQHSL PLSF+ PH+LSCAAWN+ L D +E A+SYIP AVVE
Sbjct: 770 LLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVE 829
Query: 791 NSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQ 850
NSFL GLNPLECF+HSVTSRDSSFSDNADLPGTLTRRLMFFMRDL AYDGTVRNAYGNQ
Sbjct: 830 NSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQ 889
Query: 851 IVQFSYNIEGTSTPTG---------EIGDQPVGSLSACAISEAAYSALDQPISLLETSPL 901
+VQFSYNIE TSTP+ ++G QPVGS+SACAISEAAYSALDQPISLLE SPL
Sbjct: 890 LVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPL 949
Query: 902 LNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMI 961
LNLK VLECG +KS AD+T+SLFLS KL KR+HGFEYGALEVKNHLE L+ SDIVST MI
Sbjct: 950 LNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMI 1009
Query: 962 IYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLI 1021
++SPQ GS HFSPW+CHFHV +EI K+ LK HSIID+LY +C +AR E KI++PD+ I
Sbjct: 1010 VFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQI 1069
Query: 1022 SNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKV 1081
++KDC ++M+KE +D FC+TV IV N K++ I L+T++ V+PFLL VVKG ++KKV
Sbjct: 1070 TSKDC-FVDMEKEDSDCFCITVSIV-NSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKV 1127
Query: 1082 DILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDN 1141
DILW D S S G LYLRV +SG C + W LM+ C QIMDMIDW RSHPDN
Sbjct: 1128 DILWNDNPD-SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDN 1186
Query: 1142 IRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLAL 1201
I + YGIDAG ++FL +L+SAISD GK +LPEHLL+VA+ LSATGEFVGLNAKG+A
Sbjct: 1187 IHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMAR 1246
Query: 1202 QRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIY 1261
Q++ +S+SSPF+Q FS+PG+ FIKA K DNL GS+DAL WGK+PSVG+GGHFDI+Y
Sbjct: 1247 QKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILY 1306
Query: 1262 SGEGRTLSKPVDVYNLLSTPVSS-KQNEKLKVCKAQGLISDKCGAKF----GDFAFKGLG 1316
S +G L++P D+Y LL + S +QN K+KV + KCGA+ GD A KG
Sbjct: 1307 SAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCK 1366
Query: 1317 NLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRN 1376
+L E IS+ VLR + ND+ +LS LK IL KY I +LSE DKTT++ ALYFHPRR+
Sbjct: 1367 SL--EKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRD 1424
Query: 1377 EKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAK 1436
EK+G +I+V YH ++ N+RCFSLVR DG+ EDFSYHKCV GALEII P +A Y+++
Sbjct: 1425 EKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQSR 1484
Query: 1437 W 1437
W
Sbjct: 1485 W 1485
>gi|224053985|ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit [Populus trichocarpa]
Length = 1517
Score = 1780 bits (4610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 907/1506 (60%), Positives = 1105/1506 (73%), Gaps = 78/1506 (5%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS 60
M+ +F EE +VPS ++TG++ G+ T+ E EKLSV+ I AVSEVT+P+LGLPNP+++CS+
Sbjct: 1 MEIDFSEEQ-QVPSALITGMAFGVLTEAETEKLSVLNIDAVSEVTDPKLGLPNPSSQCST 59
Query: 61 CGAKDRKACEG-----------------------------HFGFIKFPFTILHPYFLSDI 91
CG++D K+CEG HFG I FP+TI+HPYFLS++
Sbjct: 60 CGSRDLKSCEGIVDVDLNSADRLASIATGDCANILLSLSGHFGVINFPYTIVHPYFLSEV 119
Query: 92 AKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKT 151
++LN ICP CK+IR + + Q + CKYC N WYP M+FK+SSK++ KT
Sbjct: 120 VQILNKICPGCKSIRLAKATELITKENPQRKGCKYCAGNSLGWYPPMKFKVSSKEIFRKT 179
Query: 152 AIIVEIDEKLSKKNKK-----LPDDYWGFIPFDAQQEE--NSVKPNRKVLSCKQVSYLLK 204
AII EI E LSKK +K L DYW P D Q+EE + KPNR+VLS QV ++LK
Sbjct: 180 AIIAEIRETLSKKPQKGFKKILAADYWDIFPKDEQEEEEETNAKPNRRVLSHSQVRHMLK 239
Query: 205 DVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYR 264
DVDP+ + IL D FL CFPVTPN+HRVTEV HAFS+ ++L FD TR KKMVD+R
Sbjct: 240 DVDPNFIKLSILKTDTIFLNCFPVTPNSHRVTEVTHAFSNGQRLIFDERTRAYKKMVDFR 299
Query: 265 GRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNID-ISNSSGLRWIKDVVLGKRND 323
G LS V DCLK SKL+ DKS D + KK+ D ++N+SGLRWIKDVVLGKRND
Sbjct: 300 GVANTLSFHVMDCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVVLGKRND 359
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCR 383
FRMV+ GDP+++L EIGIPC +AERLQISE L +WNWE+L+ C EKG+++V R
Sbjct: 360 HSFRMVIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEKSRFEKGDMHVRR 419
Query: 384 KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINP 443
+G LVR+R + L LGDIIYRPL DGD VLINRPPSIH HSLIAL+VKVLP+ SV+ INP
Sbjct: 420 EGNLVRVRHMKELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPVPSVLAINP 479
Query: 444 LCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAH 503
LCC PF DFDGDCLHGY+PQ++ RVELTELV+LDKQL N QSGRNLLSL QDSLTAAH
Sbjct: 480 LCCPPFRADFDGDCLHGYVPQSVDTRVELTELVSLDKQLTNWQSGRNLLSLSQDSLTAAH 539
Query: 504 LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPS 562
L++ED V LS ++QQLQMF P RFL P + S ++ VW+GKQL SMLLP F++ FPS
Sbjct: 540 LVLEDDVFLSSFELQQLQMFRPERFLLPAVKAPSANALVWTGKQLISMLLPVGFDHDFPS 599
Query: 563 KDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTV 622
+V I G L+S+EGS WL D +GNLFQ L+K +VLDFLYAAQ VLCEWLS+RG++V
Sbjct: 600 CNVCIRDGDLVSSEGSFWLWDTDGNLFQSLVKHCHGQVLDFLYAAQRVLCEWLSMRGLSV 659
Query: 623 SLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSES------ 676
SLSDLYL S SRK +MDEI+YGL++A CN + LMVDS +FL + +
Sbjct: 660 SLSDLYLCPDSNSRKNMMDEIWYGLQDADYACNLKHLMVDSCRDFLTGNNEEDQCNVERL 719
Query: 677 ------------TRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
+ GE L YEKQRSAALSQ+SVDAF+ VF DIQ+L YKY S+DNS
Sbjct: 720 RFLSGCSEEDYCVMAFDGERLCYEKQRSAALSQSSVDAFRLVFRDIQSLVYKYASQDNSF 779
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI 784
LAMFKAGSKGNLLKLVQHS+CLGLQH+LA LSFR PH+LSCA WN+ +A D TE AK YI
Sbjct: 780 LAMFKAGSKGNLLKLVQHSMCLGLQHALASLSFRIPHQLSCAGWNKQKADDATESAKRYI 839
Query: 785 PSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVR 844
P AVVE SFL+GLNP+ECF+HSVTSRDSSFSDNADLPGTL RR+MFFMRDL AYDGTVR
Sbjct: 840 PHAVVEGSFLSGLNPIECFVHSVTSRDSSFSDNADLPGTLFRRMMFFMRDLHGAYDGTVR 899
Query: 845 NAYGNQIVQFSYNIEGTSTPTGE---------IGDQPVGSLSACAISEAAYSALDQPISL 895
NAYGNQ+VQFSYNI+ P+G I +PVG L+ACAISEAAYSALDQPISL
Sbjct: 900 NAYGNQLVQFSYNIDDMD-PSGSVDEINNSDGIAGRPVGPLAACAISEAAYSALDQPISL 958
Query: 896 LETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDI 955
LE SPLLNLKNVLECG K+++A QTMSLFLS KLG++RHGFEY ALEV+NHLE L+ SDI
Sbjct: 959 LEKSPLLNLKNVLECGLKRNSAHQTMSLFLSEKLGRQRHGFEYAALEVQNHLERLLFSDI 1018
Query: 956 VSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKIS 1015
VS II+SPQ+ HFSPW+CHFHV KEI+K+ LK H IID+L +QCK+ K
Sbjct: 1019 VSFVRIIFSPQSDGRMHFSPWVCHFHVYKEIVKKRSLKVHYIIDALEKQCKS-----KTR 1073
Query: 1016 VPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGF 1075
P + I+++ C+ + KE + FC+TV IVE K I+LETIQ ++PFLL+TV+KGF
Sbjct: 1074 FPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFIELETIQDLMIPFLLETVIKGF 1133
Query: 1076 REIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWT 1135
EI+KVDILW DK K KSH+ GEL+LRV MS T LW+ LM+DC IMD+IDW
Sbjct: 1134 MEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDKTRLWNQLMDDCLSIMDLIDWA 1193
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
RSHPDNI CLAYGIDAG +FFL NL+SA+SD GK +LPEHLL+VAN LS TGEFVGLN
Sbjct: 1194 RSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVLPEHLLLVANCLSVTGEFVGLN 1253
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGG 1255
AKGL QR+H+SVS+PFVQA FSNPG FI+AAKAG VD+LQGS+DAL WGKVP++GT G
Sbjct: 1254 AKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVDDLQGSIDALAWGKVPAIGT-G 1312
Query: 1256 HFDIIYSGEGRTLSKPVDVYNLL-STPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKG 1314
FDI+YSG+G SKPVDVYNLL S +S++QN + V AQ SDKCGA+F F G
Sbjct: 1313 QFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGVLDAQIYKSDKCGAQFL-HKFGG 1371
Query: 1315 LGNLDF---ETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYF 1371
G F E I R LR+ TY+D+ R+S ++KIL+KYS+ Q+L+E DK+ ++ LYF
Sbjct: 1372 CGPKGFKVKEGIPRSFLRRLLTYDDIQRMSYTVRKILNKYSVDQQLNESDKSVLMMTLYF 1431
Query: 1372 HPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAE 1431
HPRR+EK+GI DI+V HPE+Q++RCFSLVR DG+IEDFSY KC+ ALEIIAP++A+
Sbjct: 1432 HPRRDEKIGIGAKDIKVINHPEYQDTRCFSLVRTDGTIEDFSYRKCLHNALEIIAPQRAK 1491
Query: 1432 IYRAKW 1437
Y K+
Sbjct: 1492 RYCEKY 1497
>gi|449460519|ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus]
gi|449494342|ref|XP_004159519.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 1706 bits (4419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1463 (58%), Positives = 1084/1463 (74%), Gaps = 43/1463 (2%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
L +PSG+LTGI+ +S + E ++V+ + A +EV++P+LGLPNP+ +C++CGA K C
Sbjct: 9 LPIPSGLLTGINFSVSNQQDIENIAVITVDAANEVSDPKLGLPNPSYQCTTCGASSLKFC 68
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE--RQKGAGSSRKEQPRVCKYC 127
EGHFG IKFP+TI+HPYFLS++A++LN +CP CK++R+E + +S +P+ C+YC
Sbjct: 69 EGHFGVIKFPYTIIHPYFLSEVAQVLNKVCPGCKSVRQELWGKVEDPTSDYNRPKGCRYC 128
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK------LPDDYWGFIPFDAQ 181
+ WYP MRFKLS+ D+ K+ I+VE+ E +SKK +K LP DYW FIP D Q
Sbjct: 129 FGSLKDWYPPMRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQ 188
Query: 182 QEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHA 241
QEE+ +PNRK+L+ QV YLLKD+DP ++F+ + D+ FL FPVTPN+HRVTE+ H+
Sbjct: 189 QEESYCRPNRKILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHS 248
Query: 242 FSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSR-KDSAEVRQKK 300
FS+ ++L FD TR KK+VD+RG EL V DCLKISK + + QKK
Sbjct: 249 FSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYNIFVFCLNHVNYYQKK 308
Query: 301 NIDI-SNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNS 359
D ++SSGLRWIKDVVLGKR+D CFRMVV GDPNI+L EIGIPC VAERLQISE L+S
Sbjct: 309 IKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSS 368
Query: 360 WNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPS 419
WN ++LS L+EKGE+YV R+G LVR+R + L +GD IYRPL DGDIVL+NRPPS
Sbjct: 369 WNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPS 428
Query: 420 IHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALD 479
IH HSLIAL+VK+LP+S+V+++NPLCCSPF GDFDGDCLHGY+PQ++ ARVE+ ELV+LD
Sbjct: 429 IHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLD 488
Query: 480 KQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK--IS 537
KQL N QSGRNLLSL DSLTAAHL++ED V L+ QMQQLQM H+ L P I K +
Sbjct: 489 KQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLL 548
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR 597
++ W+GKQLFS+LLPPDF+Y+ PS +V+I G+LIS+EGS WLRD NLFQ LI+
Sbjct: 549 RNCAWTGKQLFSILLPPDFDYSSPSHNVFIEKGELISSEGSYWLRDSGRNLFQALIEHCE 608
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
K LD+L AQ VLCEWLS RG++VSLSDLYL+ S S + +MD+IF GL+EA++TCN +
Sbjct: 609 GKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLK 668
Query: 658 QLMVDSHMNFLM-SAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
QLMVDSH L+ + +D++ S+ E L YEKQ+SAAL+QASVDAFK VF DIQNL YK
Sbjct: 669 QLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQNLVYK 728
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR------ 770
Y KDNSLL MFKAGSKGNL+KLVQHS+CLGLQHSL LSF PH+LSCAAWN
Sbjct: 729 YSGKDNSLLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQKMPRY 788
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMF 830
++ + +S+IP AVVENSFL+GLNP ECF HSVT+RDSSFSDNA++PGTLTR+L F
Sbjct: 789 IQKDGLPDRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTF 848
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE-----------IGDQPVGSLSAC 879
MRD+ TAYDGTVRNAYGNQ+VQF Y+I+ PT E IG PVGSL+AC
Sbjct: 849 LMRDIYTAYDGTVRNAYGNQLVQFCYDID---RPTSESESENNNRDRGIGGHPVGSLAAC 905
Query: 880 AISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYG 939
AISEAAYSALDQPISLLE SPLLNLK VLECGSK+++ QT SLFLS KL KR +GFEYG
Sbjct: 906 AISEAAYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYG 965
Query: 940 ALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIID 999
AL VKNHLE +M DIVS+ MII+SP KHFSPW+CHFHV KEI+K+ LK +S+I
Sbjct: 966 ALGVKNHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIH 1025
Query: 1000 SLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETI 1059
SL +C + R E ++++P + I +DC + E D C+TV I EN K + + L+ I
Sbjct: 1026 SLNMRCDSMRQEGRMNLPSLQIITQDCPLADSLTEDGDTVCLTVTIAENTKNSFLQLDFI 1085
Query: 1060 QMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWS 1119
Q ++ FLL TV++GF EI +VDI W D+ K K S GELYLRV+MSG+ + + W+
Sbjct: 1086 QDLLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPR-CSHGELYLRVTMSGEGN-SRFWA 1143
Query: 1120 ALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLL 1179
LMN+C IMD+IDWTRSHPDN S CLAYGID+G ++FL +LESA D GK I EHLL
Sbjct: 1144 TLMNNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLL 1203
Query: 1180 IVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGS 1239
+V+N+LSATGEFVGLN KGL QR+H+ V +PF+QA FS+PGA IKAAKAG DNL GS
Sbjct: 1204 LVSNSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGS 1263
Query: 1240 VDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL-STPVSSKQNEKLKVCKAQGL 1298
+DAL WG++PS+GTGG FDI+YSG+G L+KPVDVYNLL KQN K++ +
Sbjct: 1264 LDALAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQSTCEKQNTKIESLD-KNT 1322
Query: 1299 ISDKCGAKF----GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIG 1354
IS+K A+ G KGL LD ++S+ +LRK T ND+ +LS AL+ ILHKYS+
Sbjct: 1323 ISEKYSAQLMLKNGGSTIKGLKRLD--SVSKSILRKFLTLNDIQKLSFALRTILHKYSLN 1380
Query: 1355 QRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSY 1414
+RL+E DK+T++ ALYFHP R+EK+G+ DI+V H ++QN+RCF L+R DG+ EDFSY
Sbjct: 1381 ERLNEVDKSTLMMALYFHPHRDEKIGVGAQDIKVGSHSKYQNTRCFVLIRSDGTTEDFSY 1440
Query: 1415 HKCVIGALEIIAPEKAEIYRAKW 1437
HKCV+GALEIIAP + + Y++KW
Sbjct: 1441 HKCVLGALEIIAPHRVKGYQSKW 1463
>gi|356540468|ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1461
Score = 1626 bits (4210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 839/1482 (56%), Positives = 1067/1482 (71%), Gaps = 60/1482 (4%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTD-----TEKEKLSVMEIGAVSEVTNPRLGLPNPT 55
MD++ + + PSG++ I + + E ++V+EI A +VT LG PN +
Sbjct: 1 MDDDLFQRN-KTPSGVIKAIKFDFTVTLVVGFDQMENIAVLEINAAGQVTGSSLGFPNAS 59
Query: 56 NECSSCGAKDRKACE--GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGA 113
+EC++CG+KD++ CE GHFG IKFP ILHPYF+S+IA +LN ICP CK+IR + KG
Sbjct: 60 DECATCGSKDKRFCEVSGHFGVIKFPTPILHPYFMSEIAHILNKICPVCKSIR-HKSKGV 118
Query: 114 ----GSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLP 169
G+ R C YC YP M+F++SS DL +TAIIVE+ ++P
Sbjct: 119 RLIYGTKRSND---CNYC-----SAYPSMKFRVSSNDLFRRTAIIVEVKASKKTLGTEIP 170
Query: 170 DDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVT 229
DYW FIP DAQQEEN V NR+VLS QV LL VDP E++I K+ +L CFPVT
Sbjct: 171 ADYWNFIPCDAQQEENYV--NRRVLSPAQVLNLLNGVDPDFIEKYIPRKNLLYLNCFPVT 228
Query: 230 PNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSS 289
PN HRVTEVP+A S +L FD+ TR KK+VD+RG ELS V DCL+ISKL+ DK+
Sbjct: 229 PNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTPNELSSRVLDCLRISKLNPDKTP 288
Query: 290 RKDSAEVRQKK-NIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVA 348
A+++Q+K + NSSGLRWIKDVVLGKRND R VV GDP+++L E+GIPC +A
Sbjct: 289 NSIFADIQQRKIGENACNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDLELSEVGIPCHIA 348
Query: 349 ERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTD 408
E LQ+SE +N N E+L C RLLEKG++ VCR G V + + + L++GD IYRPL D
Sbjct: 349 ESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVCRNGSKVHLYKKEDLQIGDKIYRPLAD 408
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
GD VLINRPPSIH HS+IALTV+VLPISSVV INPLCCSP GDFDGDCLHGYIPQ++ A
Sbjct: 409 GDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVTA 468
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF--CPH 526
R+EL ELVALD+QLIN QSGRNLLSL QDSLTAA+LLMED VLL+ QMQQLQM
Sbjct: 469 RIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLSISDK 528
Query: 527 RFLSPDIFKI--SKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLI-SAEGSSWLRD 583
R + P + K S S+WSGKQ+FSMLLP DF+Y+FPS V +S G+L+ S+E S WLRD
Sbjct: 529 RLIPPAVVKAPSSNSSLWSGKQIFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRD 588
Query: 584 YEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ N+FQ L++ Y+ K L+FLY AQ+VLCEWLS+ G +VSLSDLYL+S S +RK +++EI
Sbjct: 589 SDYNVFQSLVEHYQGKTLNFLYTAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEI 648
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLM-SAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
FYGL++A+ CNF+QL++D + +FL S ++SE+ ++ + L+YE+Q SAALSQASVDA
Sbjct: 649 FYGLQDAEQACNFKQLLLDCYCDFLSGSIQESENAITVDADRLNYERQISAALSQASVDA 708
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
F+ VF +IQ+LA KY KDN+ LAMFKAGSKGNLLKLVQHS+CLG+Q+SL LS+R P
Sbjct: 709 FRQVFRNIQSLADKYACKDNAFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRH 768
Query: 763 LSCAAWNRLRAGDNT-------ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
LSCAAWN + D+ E +SYIP AVVE+SFLTGLNPLECF+HSVT+RDSSFS
Sbjct: 769 LSCAAWNSQKWLDSIQMSSGTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFS 828
Query: 816 DNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST-----PTGEIGD 870
D+ADLPGTLTRRLMFFMRDL AYDGTVRN YGNQ++QFSY+IE S+ IG
Sbjct: 829 DHADLPGTLTRRLMFFMRDLHDAYDGTVRNLYGNQLIQFSYDIEEDSSCDKGFQEYAIGG 888
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLG 930
+PVG++SACAISEAAYSAL QP+SLLETSPLLNLKNVLECGS+K N DQT+SLFLS KLG
Sbjct: 889 EPVGAISACAISEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLG 948
Query: 931 KRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKH-FSPWICHFHVRKEIMKR 989
K+RHGFEY ALEVKN+LE L+ S+IVST MII++P GS + +SPW+CHFH+ KEI+ R
Sbjct: 949 KQRHGFEYAALEVKNYLERLLFSNIVSTVMIIFTPHDGSSQEKYSPWVCHFHLDKEIVTR 1008
Query: 990 TGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAF--------CV 1041
LK HSIIDSLY++ + R + K+ ++ IS+K CS+ +M KE D C+
Sbjct: 1009 RKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSKKCSADSMAKEGEDTSIDKKEGDDCI 1068
Query: 1042 TVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGE 1101
TV IVEN K I L++++ V+PFLL T +KGF ++KKVD+LW ++ K S + GE
Sbjct: 1069 TVTIVENSK-NPIQLDSVRDLVIPFLLGTAIKGFLDVKKVDVLWNNQSKVKNSCNGFSGE 1127
Query: 1102 LYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTN 1161
LYLRV++S + W L+N CH+IM +IDWTRSHPDNI F AYGIDAG Q+F +
Sbjct: 1128 LYLRVTLSSEGSRGRFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNS 1187
Query: 1162 LESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPG 1221
L SA SDTGK+ILP+HL +VAN+LS +GEFVGLNAKG+ALQRKH+SVSSPFVQA F+NPG
Sbjct: 1188 LASATSDTGKSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPG 1247
Query: 1222 ASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP 1281
+ FIKAAK+G DNLQGS+DAL WG S+GT G FDIIYS ++K +VY LL
Sbjct: 1248 SCFIKAAKSGVTDNLQGSLDALAWGNCLSMGTSGMFDIIYS---EKVAKSGNVYELLEAS 1304
Query: 1282 VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLS 1341
N+ SDKCG+ +F K L + +LR T ND+ +L+
Sbjct: 1305 FDKPNNK--AGTHLHKYSSDKCGS---EFRHKNGYALKEGKQWKTILRNFVTVNDIQKLT 1359
Query: 1342 NALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFS 1401
A + IL+KYSI + LSE D++T++R L FHPR++EK GI P DI+V +HP++++SRCF
Sbjct: 1360 FASRCILNKYSIDELLSESDRSTMLRVLNFHPRKSEKFGIGPQDIKVGWHPKYKDSRCFH 1419
Query: 1402 LVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLGTA 1443
+VR DG++EDFSY KC++GAL+I+ P+K++I KW G
Sbjct: 1420 IVRIDGTVEDFSYRKCILGALDIVDPKKSKIQEKKWSGHGNT 1461
>gi|357481757|ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1687
Score = 1622 bits (4199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 845/1476 (57%), Positives = 1062/1476 (71%), Gaps = 63/1476 (4%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFP 79
+SL + EK+S +EI A +VT LGLPN + C++CG+KDRK+CEGHFG IKFP
Sbjct: 170 VSLAVELGQLHEKISALEINAPGQVTCSDLGLPNSSYGCTTCGSKDRKSCEGHFGAIKFP 229
Query: 80 FTILHPYFLSDIAKLLNSICPKCKTIRKE-RQKGAGS--SRKEQPRVCKYCVRNPAQWYP 136
FTILHPYF+++IA++L ICP CK+IR+E R K A S QP+ CKYC N YP
Sbjct: 230 FTILHPYFMAEIAEILQKICPACKSIRQEIRVKRAKSLLGYNNQPKGCKYCCGNGMGRYP 289
Query: 137 RMRFKLSSKDLSGKTAIIVEIDE-KLSKK---NKKLPDDYWGFIPFDAQQEENSVKPNRK 192
M+F++SS D +TAIIVE+++ L+KK + LP DYW FI D QQEEN V NRK
Sbjct: 290 AMKFRVSSNDFFRRTAIIVEVNDISLNKKRNLGRGLPADYWDFILGDVQQEENHV--NRK 347
Query: 193 VLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDN 252
VLS QV LL VDP+ E+FI S D L CF V PN HRVTEVPH S L FDN
Sbjct: 348 VLSPVQVENLLSGVDPNFIEKFIPSMDLVGLSCFLVAPNCHRVTEVPHRLSGGYPLSFDN 407
Query: 253 WTRHLKKMVDYRGRDIELSHLVQDCLKISK-----LHLDKSSRKDSAEVRQKK-NIDISN 306
TR KK+VD+RG ELS V DCL+ SK ++ D++ E++Q+K + N
Sbjct: 408 RTRACKKLVDFRGTANELSSRVLDCLRFSKASFSVINPDRTPVNIFTELQQRKVGENACN 467
Query: 307 SSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS 366
SSGLRW+KDVVLGKRND FR VV GDP+++L EIGIPCQ+AE LQ+SE +N N + L
Sbjct: 468 SSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLL 527
Query: 367 VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
C RLLEKG++ V R G V + + + L++GDI YRPL DGD VLINRPPSIH HS+I
Sbjct: 528 YCCELRLLEKGQINVRRNGNPVVLYKKEDLQIGDIFYRPLVDGDKVLINRPPSIHQHSMI 587
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
ALTV+VLPISSVV+INP+CCSP GDFDGDCLHGYIPQ++GARVEL ELVALD+QLIN Q
Sbjct: 588 ALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQ 647
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKI--SKDSVWSG 544
SG NLLSL QDSLTAAHLL+ED V + Q+QQL+M C SP IFK S WSG
Sbjct: 648 SGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPSSNTPFWSG 707
Query: 545 KQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYEGNLFQYLIKRYRDKVLDF 603
KQLFSMLLP F+Y FPS DV++ G+LIS +E S WLRD E N+FQ L++ ++ K+LD
Sbjct: 708 KQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKILDV 767
Query: 604 LYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS 663
L+ AQ+ LCEWLS+ G +VSLSDLYL+S S +RK +M+EI YGLR A+ C+F QL+VD
Sbjct: 768 LHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLLVDH 827
Query: 664 HMNFL-MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDN 722
+ +FL S +++E ++ + L++E+Q SAA SQASVDAF+HVF +IQ+LA K+ KDN
Sbjct: 828 YSDFLSASPEENEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHACKDN 887
Query: 723 SLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR-------AGD 775
S LAMFKAGSKGNLLKLVQHS+CLGLQHSL LS+R P ELSCA WN + + D
Sbjct: 888 SFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSSD 947
Query: 776 NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDL 835
E +SYI AVVE+SFLTGLNPLECF+HSVT+RDSSFSDNADLPGTLTRRLMFFMRD+
Sbjct: 948 TLEPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDM 1007
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE-----IGDQPVGSLSACAISEAAYSALD 890
AYDGTVRN YGNQ++QFSY+ E S+ IG +PVG+LSACA+SEAAYSAL
Sbjct: 1008 YDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALS 1067
Query: 891 QPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECL 950
QPISLLE SPLLNLKNVLECGS+K DQT+SLFLS K+GK+R+GFEY ALEVKN+LE
Sbjct: 1068 QPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERY 1127
Query: 951 MLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAART 1010
M S+IVST MII++PQ S +SPW+CHFH+ KE + R L+ HSIIDSLY+Q + R
Sbjct: 1128 MFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSLYQQYDSFRR 1187
Query: 1011 ELKISVPDMLISNKD-----------CS-------------SINMQKECNDAFCVTVMIV 1046
E K+ +P + IS+K CS S+ +K+ D C+TV +V
Sbjct: 1188 ESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGED--CITVAVV 1245
Query: 1047 ENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRV 1106
E+ K S+ L++++ ++PFLL+T +KGF EIKKVDILWKD K +KS++ S GELYLRV
Sbjct: 1246 EDSK-NSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAGELYLRV 1304
Query: 1107 SMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAI 1166
+MS + W L+N CH+IM +IDWTRSHPDNI FC A+GIDAG Q + NL SA
Sbjct: 1305 TMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFHNLSSAT 1364
Query: 1167 SDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK 1226
SDTGK+ILP+HL +VAN+LSA+GEFVGLNAKG+A QRKH+SVSSPFVQA FSNPG+SF+K
Sbjct: 1365 SDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFLK 1424
Query: 1227 AAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQ 1286
AAK+G VDNLQG++DAL WG +GTGG FDIIYS + ++K VDVY LL T ++
Sbjct: 1425 AAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLETSF-NQM 1483
Query: 1287 NEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETIS-RGVLRKSWTYNDVLRLSNALK 1345
++++ + +++ S KC + DF K G E + VLR T ND+ RL+ +
Sbjct: 1484 DQEINIPQSRKYSSGKCSS---DFRSKNGGYTPKEPKQWKSVLRNFMTANDIQRLTFDAR 1540
Query: 1346 KILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVRE 1405
IL+KY I + LSE DK T+++ L+FHPRR+EK G P +I+V +HPE +SRCF ++R+
Sbjct: 1541 VILNKYQIDETLSETDKLTIMKVLHFHPRRDEKFGSGPQNIKVGWHPEFTDSRCFFIIRK 1600
Query: 1406 DGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKRLG 1441
DGS+EDFSY KC++GAL+II P+K++I R +W G
Sbjct: 1601 DGSVEDFSYRKCILGALDIIDPKKSKIQRNRWSGNG 1636
>gi|356495649|ref|XP_003516687.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine max]
Length = 1622
Score = 1611 bits (4172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/1445 (57%), Positives = 1054/1445 (72%), Gaps = 51/1445 (3%)
Query: 31 EKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACE--GHFGFIKFPFTILHPYFL 88
E +SV+EI A +VT LGLPN ++EC++CG KD+K CE GHFG IKFP ILHPYF+
Sbjct: 28 ENISVLEINAAGQVTGSNLGLPNASDECATCGTKDKKFCEVSGHFGVIKFPTPILHPYFM 87
Query: 89 SDIAKLLNSICPKCKTIRKERQKGA----GSSRKEQPRVCKYCVRNPAQWYPRMRFKLSS 144
+IA +LN ICP CK+IR + KGA G+ R C YC YP M+F++SS
Sbjct: 88 LEIAHILNKICPVCKSIR-HKSKGARLIYGTKRSND---CNYC-----SVYPSMQFRVSS 138
Query: 145 KDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
DL +TAIIVE+ ++P D+W FIP DAQQEEN V NR+VLS QV+YLL
Sbjct: 139 NDLFRRTAIIVEVKASKKTLGTEIPADFWNFIPCDAQQEENYV--NRRVLSPVQVNYLLN 196
Query: 205 DVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYR 264
DVDP E++I K+ L CFPVTPN HRVTEVP+A S +L FD+ TR KK+VD+R
Sbjct: 197 DVDPDFIEKYIPRKNLLCLNCFPVTPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFR 256
Query: 265 GRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKK-NIDISNSSGLRWIKDVVLGKRND 323
G ELS V DCL+ISKL+ DK+ A+++Q+K + NSSGLRWIKDVVLGKRND
Sbjct: 257 GTANELSSRVLDCLRISKLNPDKTPNSIFADIQQRKIGENAFNSSGLRWIKDVVLGKRND 316
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCR 383
FR VV GDP+++L EIGIPC +AE LQ+SE +N N E+L C LLEKG++ VCR
Sbjct: 317 SSFRTVVVGDPDLELSEIGIPCHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCR 376
Query: 384 KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINP 443
KG +V + + + L++GD YRPL DGD VLINRPPSIH HS+I+LTV+VLPISSVV INP
Sbjct: 377 KGSIVHLYKKEDLQIGDKFYRPLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINP 436
Query: 444 LCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAH 503
LCCSP GDFDGDCLHGYIPQ++ AR+EL ELVALD+QLIN QSGRNLLSL QDSLTAA+
Sbjct: 437 LCCSPLRGDFDGDCLHGYIPQSVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAY 496
Query: 504 LLMEDSVLLSHLQMQQLQMF--CPHRFLSPDIFKI--SKDSVWSGKQLFSMLLPPDFEYT 559
LLMED VLL+ QMQQLQM R + P + K S S+W+GKQLFSMLLP DF+Y+
Sbjct: 497 LLMEDGVLLNVYQMQQLQMLSISNKRLIPPAVVKAPSSNSSLWNGKQLFSMLLPYDFDYS 556
Query: 560 FPSKDVYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVR 618
FPS V +S G+L+ S+E S WLRD + N+FQ L++ Y+ K L+FLYAAQ+VLCEWLS+
Sbjct: 557 FPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYAAQKVLCEWLSMT 616
Query: 619 GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLM-SAKDSEST 677
G +VSLSDLYL+S S +R+ +++EIFYGL++A+ CNF+QL++D + +FL S ++SE+
Sbjct: 617 GFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYCDFLSGSLQESENA 676
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLL 737
++ + L+YE+Q SA+LSQASVDAF+ VF +IQ+LA KY K NS LAMFKAGSKGNLL
Sbjct: 677 ITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSFLAMFKAGSKGNLL 736
Query: 738 KLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNT-------ECAKSYIPSAVVE 790
KLVQHS+CLG+Q+SL LS+R P LSCA WN + D+ E +SYIP AVVE
Sbjct: 737 KLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTLESVQSYIPYAVVE 796
Query: 791 NSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQ 850
+SFLTGLNPLECF+HSVT+RDSSFSD+ADLPGTLTRRLMFFMRDL AYDGTVRN YGNQ
Sbjct: 797 SSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGNQ 856
Query: 851 IVQFSYNIEGTSTPTG-----EIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLK 905
++QFSY+IE S+ +G + VG++SACAISEAAYSAL QP+SLLETSPLLNLK
Sbjct: 857 LIQFSYDIEEDSSCNKGFQQYALGGESVGAISACAISEAAYSALGQPVSLLETSPLLNLK 916
Query: 906 NVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSP 965
NVLECGS+K N DQT+SLFLS KLGK+RHGFEY ALEVKN+LE L+ S+IVS MII++P
Sbjct: 917 NVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVKNYLERLLFSNIVSKVMIIFTP 976
Query: 966 Q-TGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNK 1024
+ S + +SPW+CHFH+ KEI+ R LK HSIIDSLY++ + R + K+ ++ IS++
Sbjct: 977 HDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQRYYSQRKDSKVCFTNLKISSR 1036
Query: 1025 DCSSINMQKECNDAF--------CVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFR 1076
CS+ +M KE D C+ V IVEN K I L++++ V+PFLL T ++GF
Sbjct: 1037 KCSADSMVKEGEDTSIDKEEGDDCIMVTIVENSK-NPIQLDSVRDLVIPFLLGTAIQGFL 1095
Query: 1077 EIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTR 1136
++KKVDILW ++ K + S + GELYLRV++S + W L+ CH+IM +IDWTR
Sbjct: 1096 DVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGSRGRFWGVLLKLCHKIMHIIDWTR 1155
Query: 1137 SHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNA 1196
SH DNI F AYGIDAG Q+F +L A SDTGK+ILP+HL +VAN+LS +GEFVGLNA
Sbjct: 1156 SHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILPKHLCLVANSLSCSGEFVGLNA 1215
Query: 1197 KGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGH 1256
KG+ALQRKH+SVSSPFVQA F+NPG+ FIKAAK+GA DNLQGS+D L WG S+GT G
Sbjct: 1216 KGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDNLQGSLDGLAWGNCLSMGTSGM 1275
Query: 1257 FDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLG 1316
FD+IYS +G ++K VDVY LL K N K+ SDKCG+ +F K
Sbjct: 1276 FDVIYSEKGHQVAKSVDVYELLEASF-DKPNNKIGT-HLHKYSSDKCGS---EFRHKNGY 1330
Query: 1317 NLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRN 1376
L + +LR T ND+ +L+ A + IL+KYSI + LSE D++T++R L FHP ++
Sbjct: 1331 ALKEGKQWKTILRNFVTVNDIQKLTFASRCILNKYSIDELLSESDRSTMLRVLNFHPHKS 1390
Query: 1377 EKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAK 1436
EK GI P DI+V +HP++++SRCF ++R DG++EDFSY KC++GAL+I+ P+K++I K
Sbjct: 1391 EKFGIGPQDIKVGWHPKYKDSRCFHIIRTDGTVEDFSYRKCILGALDIVDPKKSKIQEKK 1450
Query: 1437 WKRLG 1441
W G
Sbjct: 1451 WSGHG 1455
>gi|255537259|ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase, putative [Ricinus communis]
Length = 1475
Score = 1594 bits (4128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1304 (62%), Positives = 992/1304 (76%), Gaps = 31/1304 (2%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS 60
M+ + EE ++PS +LT I+ G+ST+ EKEKLSV+ I VSEVT+ +LGLPNPTN+CS+
Sbjct: 1 MEADLFEERQQLPSALLTAITFGVSTEAEKEKLSVLTIDTVSEVTDSKLGLPNPTNQCST 60
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQ 120
CG+KD K+CEGHFG IKFPFTILHPY+LS++ ++LN +CPKCK+IRKE + + +
Sbjct: 61 CGSKDLKSCEGHFGVIKFPFTILHPYYLSEVVRILNQVCPKCKSIRKESKVRCLNHLNPK 120
Query: 121 PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN------KKLPDDYWG 174
V + WYP M+F +SS+++ K II + E+ + K+ KKL DYW
Sbjct: 121 LPVLLILL----CWYPAMKFSVSSEEIFRKNVIIAKFSERPTNKSQKRGFKKKLAADYWD 176
Query: 175 FIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHR 234
IP D QQEEN +PN++VLS QV +LL+++DP+ +F+L +D+ FL CF VTPN HR
Sbjct: 177 IIPKDEQQEENITRPNQRVLSHAQVIHLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCHR 236
Query: 235 VTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSA 294
VTEV HAFS+ ++L FD+ TR KKMVD+RG ELS V DCLK SK++ DKS D
Sbjct: 237 VTEVTHAFSNGQRLVFDDRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKSVNNDDY 296
Query: 295 EVRQKK-NIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQI 353
Q+K N S+SSGLRWIKDVVLGKRND+ FRMVV GDPNIK EIGIPC +AERLQI
Sbjct: 297 MALQRKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQI 356
Query: 354 SERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVL 413
SE L +WNW++L+ C RLLEKG+++V R+G LVR+RR L +GDIIYRPL DGD VL
Sbjct: 357 SEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVL 416
Query: 414 INRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELT 473
INRPPSIH HSLIAL+VKVLP +SV+ INPL C+PF GDFDGDCLHGY+PQ++ RVEL
Sbjct: 417 INRPPSIHQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELR 476
Query: 474 ELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDI 533
ELVALDKQLIN Q+GRNLLS QDSL AAHL+MED VLLS QMQQLQMFCPH+ SP +
Sbjct: 477 ELVALDKQLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPAV 536
Query: 534 FKIS--KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQY 591
K W+GKQL SMLLP F++ PS DVYI G+LIS+EGS WLRD +GNLFQ
Sbjct: 537 RKAPSLNGCAWTGKQLISMLLPRGFDHECPSSDVYIRDGELISSEGSFWLRDTDGNLFQS 596
Query: 592 LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
LIK+ +D+VLDFLY AQEVLCEWLS+RG++VSLSDLYL S SR+ +MDE+ +GL++A+
Sbjct: 597 LIKQCQDQVLDFLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAK 656
Query: 652 DTCNFQQLMVDSHMNFLMSA-KDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
TCN +Q MVDS +FL S +D + + + EHL +EKQRSAALSQASVDAFKHVF DI
Sbjct: 657 GTCNMKQFMVDSCRDFLASIDEDEQYSVNFDVEHLCHEKQRSAALSQASVDAFKHVFRDI 716
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
Q L YKY SKDN+L+AMFK+GSKGNLLK+VQHS+CLGLQHSL PLSFR P +LSC AWN+
Sbjct: 717 QTLGYKYASKDNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRMPLQLSCDAWNK 776
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMF 830
+A + ECA+SYIPSAVVE FLTGLNPLECF+HSVTSR+SSFSDNADLPGTLTRRLMF
Sbjct: 777 QKAENAVECARSYIPSAVVEGCFLTGLNPLECFVHSVTSRESSFSDNADLPGTLTRRLMF 836
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNI-EGTSTP---TGEIGD-------QPVGSLSAC 879
FMRD+ AYDG+VR+AYGNQ++QFSYNI EG S T +I D +PVGSL+AC
Sbjct: 837 FMRDVHAAYDGSVRSAYGNQLIQFSYNIDEGRSAETYGTAKIVDNYDGMAGKPVGSLAAC 896
Query: 880 AISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYG 939
+ISEAAYSALDQPISLLE SPLLNLKNVLECG KKSNA ++MSLFLS KLG+RRHGFEYG
Sbjct: 897 SISEAAYSALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYG 956
Query: 940 ALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIID 999
AL+V++HLE L+ SDIVS S II+S Q+ S FSPW+CHFHV KEIMK+ L SII+
Sbjct: 957 ALKVQDHLERLLFSDIVSVSRIIFSSQSESKTCFSPWVCHFHVYKEIMKKRNLNVDSIIN 1016
Query: 1000 SLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETI 1059
L +CK+ ++P++ IS K CS + +E + C+TV IVE K +S L TI
Sbjct: 1017 ILNGRCKS-----NTNLPNVQISCKSCSIADNHREKEETLCITVTIVERSKNSSTRLATI 1071
Query: 1060 QMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWS 1119
Q ++PFLL+TV+KG EI KVDILWKD + SK+H+ +GELYLRVSMS T LW+
Sbjct: 1072 QDLMIPFLLETVLKGLMEINKVDILWKDWPRISKTHNQPYGELYLRVSMSADSEKTRLWN 1131
Query: 1120 ALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLL 1179
LM+ C IMDMIDWT S PDN+R F LAYGIDAG +FFL LESAISD GK++LPEH+L
Sbjct: 1132 LLMDYCLPIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFLQRLESAISDVGKSVLPEHML 1191
Query: 1180 IVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGS 1239
+VAN LS TGEFVGLNAKG QR+ +SVSSPFVQA FS+PG FIKAAKAG D+LQGS
Sbjct: 1192 LVANCLSVTGEFVGLNAKGWKRQREDASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGS 1251
Query: 1240 VDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVS 1283
+DAL WGKVPSVGT G FDI+YSG+ + L + L TP S
Sbjct: 1252 LDALAWGKVPSVGT-GQFDIVYSGKVKLLLFLLVKRVKLKTPPS 1294
Score = 119 bits (297), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 68/91 (74%)
Query: 1340 LSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRC 1399
L L +L YS+ Q+L+E DK T+ ALYFHPR+ EK+G DI+V HPE+Q+SRC
Sbjct: 1302 LETPLINLLVWYSVDQQLNEADKCTLTMALYFHPRKEEKIGSGFKDIKVVKHPEYQDSRC 1361
Query: 1400 FSLVREDGSIEDFSYHKCVIGALEIIAPEKA 1430
FSLVR DG+IEDFSY KCV GALEIIAP KA
Sbjct: 1362 FSLVRSDGTIEDFSYRKCVYGALEIIAPHKA 1392
>gi|297742608|emb|CBI34757.3| unnamed protein product [Vitis vinifera]
Length = 1359
Score = 1580 bits (4092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1464 (57%), Positives = 1031/1464 (70%), Gaps = 148/1464 (10%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS 60
MDN+F EE +VPSG+L GI +ST+ + EK+SVM+I AV+E+T+P+LG+PNP+ +CS+
Sbjct: 1 MDNDFLEEQ-QVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCST 59
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQ 120
CGAKD K CEGHFG IKFPFTILHPYFL+++ ++LN ICP CK+ R Q R+ +
Sbjct: 60 CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTR---QGQWVKVRRLR 116
Query: 121 PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK------LPDDYWG 174
+ CKYC N WYP M+FK+SSKDL KTAIIVE++EKL KK +K LP DYW
Sbjct: 117 SKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWD 176
Query: 175 FIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHR 234
FIP D QQEEN + PNR+VLS QV YLLKD+DP +EF+ D+ FL C PVTPNNHR
Sbjct: 177 FIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHR 236
Query: 235 VTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSA 294
VTE+ HA S+ + L FD +R KK+VD+RG ELS C SK+
Sbjct: 237 VTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELS-----CHSASKM----------- 280
Query: 295 EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
SGL+WIK+V+LGKR + FRM+V GDP ++L EIGIPC +AE L IS
Sbjct: 281 -------------SGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLIS 327
Query: 355 ERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLI 414
E LNSWNWE+++ + RLLEKG+ YV RKG L +RR++ + GDIIYRPLTDGDIVLI
Sbjct: 328 EHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLI 387
Query: 415 NRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
NRPPSIH HS+IAL+VKVLP++SVV+INPLCCSPF GDFDGDCLHGYIPQ++ +RVEL+E
Sbjct: 388 NRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSE 447
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIF 534
LVAL++QLIN+QSGRNLLSL QDSL+AAHL+MED VLL+ QMQQL+MFCP++ SP I
Sbjct: 448 LVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAII 507
Query: 535 KIS-KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLI 593
K D+ W + S+ L D+Y+S +
Sbjct: 508 KAPLLDTQWLSMRGLSVSL----------SDIYLSSDSI--------------------- 536
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
R ++D EV C G+ V+ + T
Sbjct: 537 --SRKNMID------EVFC------GLLVA---------------------------EQT 555
Query: 654 CNFQQLMVDSHMNFLM-SAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
C+F+QL+VDS NFL+ S +++++ + L YE+Q SAAL Q+SV AFK F DIQN
Sbjct: 556 CHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQN 615
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR-- 770
L Y+Y +KDNSLLAM KAGSKGNLLKLVQ LCLGLQHSL PLSF+ PH+LSCAAWN+
Sbjct: 616 LVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQK 675
Query: 771 ---LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRR 827
L D +E A+SYIP AVVENSFL GLNPLECF+HSVTSRDSSFSDNADLPGTLTRR
Sbjct: 676 VPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRR 735
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG---------EIGDQPVGSLSA 878
LMFFMRDL AYDGTVRNAYGNQ+VQFSYNIE TSTP+ ++G QPVGS+SA
Sbjct: 736 LMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISA 795
Query: 879 CAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEY 938
CAISEAAYSALDQPISLLE SPLLNLK VLECG +KS AD+T+SLFLS KL KR+HGFEY
Sbjct: 796 CAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEY 855
Query: 939 GALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSII 998
GALEVKNHLE L+ SDIVST MI++SPQ GS HFSPW+CHFHV +EI K+ LK HSII
Sbjct: 856 GALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSII 915
Query: 999 DSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLET 1058
D+LY +C +AR E KI++PD+ I++KDC ++M+KE +D FC+TV IV N K++ I L+T
Sbjct: 916 DALYMKCNSARAESKINLPDLQITSKDC-FVDMEKEDSDCFCITVSIV-NSKKSCIQLDT 973
Query: 1059 IQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLW 1118
++ V+PFLL VVKG IK D+L S G LYLRV +SG C + W
Sbjct: 974 VRDLVIPFLLGAVVKGCC-IKNSDVL-----------KSSSGRLYLRVYVSGDCGKKNFW 1021
Query: 1119 SALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHL 1178
LM+ C QIMDMIDW RSHPDNI + YGIDAG ++FL +L+SAISD GK +LPEHL
Sbjct: 1022 GVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHL 1081
Query: 1179 LIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQG 1238
L+VA+ LSATGEFVGLNAKG+A Q++ +S+SSPF+Q FS+PG+ FIKA K DNL G
Sbjct: 1082 LLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHG 1141
Query: 1239 SVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSS-KQNEKLKVCKAQG 1297
S+DAL WGK+PSVG+GGHFDI+YS +G L++P D+Y LL + S +QN K+KV
Sbjct: 1142 SLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCY 1201
Query: 1298 LISDKCGAKF----GDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSI 1353
+ KCGA+ GD A KG +L E IS+ VLR + ND+ +LS LK IL KY I
Sbjct: 1202 QTTTKCGAQLVYANGDSASKGCKSL--EKISKSVLRSFLSLNDIQKLSRRLKFILQKYPI 1259
Query: 1354 GQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFS 1413
+LSE DKTT++ ALYFHPRR+EK+G +I+V YH ++ N+RCFSLVR DG+ EDFS
Sbjct: 1260 NHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFS 1319
Query: 1414 YHKCVIGALEIIAPEKAEIYRAKW 1437
YHKCV GALEII P +A Y+++W
Sbjct: 1320 YHKCVHGALEIIDPRRARSYQSRW 1343
>gi|297837119|ref|XP_002886441.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
gi|297332282|gb|EFH62700.1| NRPD1a [Arabidopsis lyrata subsp. lyrata]
Length = 1456
Score = 1496 bits (3872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1457 (52%), Positives = 1024/1457 (70%), Gaps = 39/1457 (2%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKD 65
CEE L+VP G LT I IS +T+++ +SV+++ A ++VT+ RLGLPNP + C +CG+KD
Sbjct: 5 CEE-LQVPVGTLTSIGFSISNNTDRDTMSVIKVEAPNQVTDSRLGLPNPDSICKTCGSKD 63
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCK 125
RK CEGHFG I F ++I++PYFL +IA LLN ICP CK IRK++ + ++QP C+
Sbjct: 64 RKVCEGHFGVINFQYSIINPYFLKEIAALLNKICPGCKYIRKKQFQIT----EDQPERCR 119
Query: 126 YCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK-----LPDDYWGFIPFDA 180
YC N YP M+F++++K++ ++ I+VE++E+ K KK LP DYW F+P D+
Sbjct: 120 YCTSNTG--YPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLALPPDYWSFVPQDS 177
Query: 181 QQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPH 240
+E+ +KP R++L+ QV LL +D + ++ I D+ L FPVTPN +RVTE+ H
Sbjct: 178 NIDESCLKPTRRILTHAQVYALLSGIDQRLIKKDIPMFDSLALTSFPVTPNGYRVTEIVH 237
Query: 241 AFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDK-SSRKDSAEVRQK 299
F + +L FD TR +K+V + G +ELS V +C++ S+L + SS +DSA QK
Sbjct: 238 QF-NGARLVFDERTRIYRKLVGFEGNTLELSSRVIECMQYSRLFSENVSSSQDSANPYQK 296
Query: 300 KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNS 359
K+ D GLR++KDV+LGKR+D FR VV GDP++KL EIGIP ++A+RLQ+SE LN+
Sbjct: 297 KS-DTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLHEIGIPERIAKRLQVSEHLNN 355
Query: 360 WNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPS 419
WN ERL S L + E++V R LV IR D L+ GD I+R L DGD VL+NRPPS
Sbjct: 356 WNNERLVTFCSPNLFDNKEVHVRRGDRLVAIRVSD-LQTGDKIFRNLMDGDTVLMNRPPS 414
Query: 420 IHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALD 479
IH HSLIA+TV+VLP +SVV++NP+CC PF GDFDGDCLHGY+PQ+I A+VEL ELVALD
Sbjct: 415 IHQHSLIAMTVRVLPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALD 474
Query: 480 KQLINQQSGRNLLSLGQDSLTAAHLL-MEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK 538
KQLIN+Q+GRNLLSLGQDSLTAA+L+ +E + L+ QMQQLQM+CP + P I K S
Sbjct: 475 KQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAIIKASP 534
Query: 539 DSV---WSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYEGNLFQYLIK 594
S W+G QLF ML PP F+YT+P DV +S G+L+S +EGS+WLRD EGN Q LIK
Sbjct: 535 SSTEPQWTGMQLFGMLFPPGFDYTYPLNDVVVSNGELLSFSEGSAWLRDGEGNFIQGLIK 594
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ KVLD +Y+AQE+L +WL +RG++VSL+DLYL+S SRK L +EI YGLREA+ C
Sbjct: 595 HDKRKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDPQSRKNLTEEISYGLREAEQVC 654
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGE--HLSYEKQRSAALSQASVDAFKHVFWDIQN 712
N QQLMV+S +FL + E S+ + YE+Q+SA LS+ +V AFK + D+Q
Sbjct: 655 NKQQLMVESWRDFLAVNGEDEGEDSVARDLARFCYERQKSATLSKIAVSAFKDAYRDVQA 714
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN--- 769
LAY+YG + NS L M KAGSKGN+ KLVQHS+C+GLQ+S LS+ FP EL+CA+WN
Sbjct: 715 LAYRYGEQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSYGFPRELTCASWNDPN 774
Query: 770 ---RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTR 826
R G+++ +SY+P V+ENSFLTGLNPLE F+HSVTSRDSSFS NADLPGTL+R
Sbjct: 775 SPLRGAKGEDSTATESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPGTLSR 834
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
RLMFFMRD+ AYDGTVRN++GNQ+VQF+Y +G P +I + +GSLSACA+SEAAY
Sbjct: 835 RLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG---PVEDITGEALGSLSACALSEAAY 891
Query: 887 SALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNH 946
SALDQPISLLETSPLLNLKNVLECGSKK +QTM+L+LS L K++HGFEYG+LE+KNH
Sbjct: 892 SALDQPISLLETSPLLNLKNVLECGSKKGQREQTMTLYLSETLSKKKHGFEYGSLEIKNH 951
Query: 947 LECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCK 1006
LE L S+IVSTSMII+SP T + SPW+CHFH+ ++++KR L S++ SL Q K
Sbjct: 952 LEKLSFSEIVSTSMIIFSPSTNTKVPLSPWVCHFHISEKVLKRKQLNVESVVSSLNEQYK 1011
Query: 1007 AARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPF 1066
+ ELK+ + D+ I + + S + + +D+FC+TV ++E K + ++L+ I++ ++PF
Sbjct: 1012 SRNRELKLDIVDLDIQSTNHCSSDDKAMKDDSFCITVTVIEASKHSVLELDAIRLVLIPF 1071
Query: 1067 LLKTVVKGFREIKKVDILWKDKQKASKSHDDSF-GELYLRVSMSGQCHITSLWSALMNDC 1125
LL + VKG +EIKKVDILW D+ KA K + D GELYLRV+M G + W+AL+ C
Sbjct: 1072 LLDSPVKGSQEIKKVDILWTDRPKAPKRNGDHLAGELYLRVTMYGDRGKRNCWTALLETC 1131
Query: 1126 HQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTL 1185
IMDMIDW+RSHPDNIR C YGIDAG F+ NLESA+SDTGK IL EHLL+VA++L
Sbjct: 1132 LPIMDMIDWSRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKTILKEHLLLVADSL 1191
Query: 1186 SATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGW 1245
S TGEFV LNAKG + QR+ S +PF QA FS+P F+KAAK G D+LQGS+DAL W
Sbjct: 1192 SVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAW 1251
Query: 1246 GKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGA 1305
GKVP GTG F+II S + + PV+VY+LLS+ K N K K D G
Sbjct: 1252 GKVPGFGTGDQFEIIISPKVHGFTTPVNVYDLLSS-TPPKTNSAPKSDKVTVQPFDLLGT 1310
Query: 1306 KFGDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTV 1365
F KG+ LD + IS LR +T+ ++ +LS +LK+IL Y I L+ +D+ V
Sbjct: 1311 AF----LKGIKVLDGKGISMSRLRTIFTWENIEKLSQSLKRILTSYEINDPLNGRDEELV 1366
Query: 1366 IRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEII 1425
+ L+ HP +K+G I V +H +SRCF +VR DG+ EDFSYHKCV+GA +II
Sbjct: 1367 MMVLHLHPNSADKIGPGLKGIRVA-KSKHGDSRCFEVVRIDGTFEDFSYHKCVLGATKII 1425
Query: 1426 APEKAEIYRAKWKRLGT 1442
AP+K +Y++K+ + GT
Sbjct: 1426 APKKVNLYKSKYLKNGT 1442
>gi|30696792|ref|NP_176490.2| nuclear RNA polymerase D1A [Arabidopsis thaliana]
gi|334183598|ref|NP_001185298.1| nuclear RNA polymerase D1A [Arabidopsis thaliana]
gi|75335311|sp|Q9LQ02.1|NRPD1_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 1;
Short=AtNRPD1a; Short=Nuclear RNA polymerase D 1a;
AltName: Full=Protein RNA-DIRECTED DNA METHYLATION
DEFECTIVE 3; AltName: Full=Protein SILENCING DEFECTIVE 4;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 2;
AltName: Full=RNA polymerase IV subunit 1a; Short=POL IV
1a
gi|8493592|gb|AAF75815.1|AC011000_18 Contains similarity to DNA-directed RNA Polymerase alpha-subunit from
Methanococcus jannaschii gi|3915860 and contains
Ribosomal protein L36 PF|00444 and RNA-Polymerase
alpha-subunit PF|00623 domains. EST gb|AA597311 comes
from this gene [Arabidopsis thaliana]
gi|12323252|gb|AAG51604.1|AC010795_8 RNA polymerase IIA largest subunit, putative; 12353-6556 [Arabidopsis
thaliana]
gi|59939208|gb|AAX12372.1| DNA-directed RNA polymerase beta subunit [Arabidopsis thaliana]
gi|68300852|gb|AAY89363.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
gi|332195920|gb|AEE34041.1| nuclear RNA polymerase D1A [Arabidopsis thaliana]
gi|332195921|gb|AEE34042.1| nuclear RNA polymerase D1A [Arabidopsis thaliana]
Length = 1453
Score = 1472 bits (3810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/1466 (52%), Positives = 1018/1466 (69%), Gaps = 56/1466 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKD 65
CEE L+VP G LT I IS + +++K+SV+E+ A ++VT+ RLGLPNP + C +CG+KD
Sbjct: 5 CEE-LQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKD 63
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCK 125
RK CEGHFG I F ++I++PYFL ++A LLN ICP CK IRK++ + ++QP C+
Sbjct: 64 RKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQIT----EDQPERCR 119
Query: 126 YCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK-----LPDDYWGFIPFDA 180
YC N YP M+F++++K++ ++ I+VE++E+ K KK LP DYW F+P D+
Sbjct: 120 YCTLNTG--YPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLTLPPDYWSFLPQDS 177
Query: 181 QQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-----LKCFPVTPNNHRV 235
+E+ +KP R++++ QV LL +D + ++ KD P L FPVTPN +RV
Sbjct: 178 NIDESCLKPTRRIITHAQVYALLLGID-----QRLIKKDIPMFNSLGLTSFPVTPNGYRV 232
Query: 236 TEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDK-SSRKDSA 294
TE+ H F + +L FD TR KK+V + G +ELS V +C++ S+L + SS KDSA
Sbjct: 233 TEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSA 291
Query: 295 EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
QKK+ D GLR++KDV+LGKR+D FR VV GDP++KL EIGIP +A+RLQ+S
Sbjct: 292 NPYQKKS-DTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVS 350
Query: 355 ERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLI 414
E LN N ERL LL+ E++V R LV I+ ++ L+ GD I+R L DGD VL+
Sbjct: 351 EHLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLM 409
Query: 415 NRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
NRPPSIH HSLIA+TV++LP +SVV++NP+CC PF GDFDGDCLHGY+PQ+I A+VEL E
Sbjct: 410 NRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDE 469
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLL-MEDSVLLSHLQMQQLQMFCPHRFLSPDI 533
LVALDKQLIN+Q+GRNLLSLGQDSLTAA+L+ +E + L+ QMQQLQM+CP + P I
Sbjct: 470 LVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAI 529
Query: 534 FKISKDSV---WSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYEGNLF 589
K S S W+G QLF ML PP F+YT+P +V +S G+L+S +EGS+WLRD EGN
Sbjct: 530 IKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFI 589
Query: 590 QYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+ L+K + KVLD +Y+AQE+L +WL +RG++VSL+DLYL+S SRK L +EI YGLRE
Sbjct: 590 ERLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLRE 649
Query: 650 AQDTCNFQQLMVDSHMNFL-MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
A+ CN QQLMV+S +FL ++ +D E YE+Q+SA LS+ +V AFK +
Sbjct: 650 AEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYR 709
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
D+Q LAY+YG + NS L M KAGSKGN+ KLVQHS+C+GLQ+S LSF FP EL+CAAW
Sbjct: 710 DVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAW 769
Query: 769 N------RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPG 822
N R G ++ +SY+P V+ENSFLTGLNPLE F+HSVTSRDSSFS NADLPG
Sbjct: 770 NDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPG 829
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
TL+RRLMFFMRD+ AYDGTVRN++GNQ+VQF+Y +G P +I + +GSLSACA+S
Sbjct: 830 TLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG---PVEDITGEALGSLSACALS 886
Query: 883 EAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALE 942
EAAYSALDQPISLLETSPLLNLKNVLECGSKK +QTMSL+LS L K++HGFEYG+LE
Sbjct: 887 EAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHGFEYGSLE 946
Query: 943 VKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLY 1002
+KNHLE L S+IVSTSMII+SP + + SPW+CHFH+ ++++KR L S++ SL
Sbjct: 947 IKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAESVVSSLN 1006
Query: 1003 RQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMW 1062
Q K+ ELK+ + D+ I N + S + Q +D C+TV +VE K + ++L+ I++
Sbjct: 1007 EQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLELDAIRLV 1066
Query: 1063 VMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSF-GELYLRVSMSGQCHITSLWSAL 1121
++PFLL + VKG + IKKV+ILW D+ KA K + + GELYL+V+M G + W+AL
Sbjct: 1067 LIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGKRNCWTAL 1126
Query: 1122 MNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIV 1181
+ C IMDMIDW RSHPDNIR C YGIDAG F+ NLESA+SDTGK IL EHLL+V
Sbjct: 1127 LETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLV 1186
Query: 1182 ANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVD 1241
A++LS TGEFV LNAKG + QR+ S +PF QA FS+P F+KAAK G D+LQGS+D
Sbjct: 1187 ADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSID 1246
Query: 1242 ALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL-STPVSSKQNEKLKVCKAQGLIS 1300
AL WGKVP GTG F+II S + + PVDVY+LL ST + N K S
Sbjct: 1247 ALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPK--------S 1298
Query: 1301 DKCGAK-FGDF--AF-KGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQR 1356
DK + FG AF K + LD + I +LR +T+ ++ LS +LK+ILH Y I +
Sbjct: 1299 DKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKRILHSYEINEL 1358
Query: 1357 LSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHK 1416
L+E+D+ V L HP EK+G I V +H +S CF +VR DG+ EDFSYHK
Sbjct: 1359 LNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVA-KSKHGDSCCFEVVRIDGTFEDFSYHK 1417
Query: 1417 CVIGALEIIAPEKAEIYRAKWKRLGT 1442
CV+GA +IIAP+K Y++K+ + GT
Sbjct: 1418 CVLGATKIIAPKKMNFYKSKYLKNGT 1443
>gi|68300844|gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1138
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/1134 (54%), Positives = 802/1134 (70%), Gaps = 28/1134 (2%)
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKG 385
FR VV GDPNI+L EIGIPC AE L ++E L+ NWER++ +L++G + V R G
Sbjct: 1 FRTVVVGDPNIELGEIGIPCXXAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNG 60
Query: 386 GLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLC 445
LVRI +D L+ GDII+RPL DGD+V+INRPPSIH HSLIAL+V++LPI+SV++INPL
Sbjct: 61 VLVRISVMDGLQKGDIIHRPLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLV 120
Query: 446 CSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
CSPF GDFDGDCLHGYIPQ+I + +EL+ELVAL +QL++ Q+G+NLLSL DSLTAAHL+
Sbjct: 121 CSPFRGDFDGDCLHGYIPQSIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLI 180
Query: 506 MEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSV--WSGKQLFSMLLPPDFEYTFPSK 563
+E V L QMQQLQMFCP + I K ++ W+GKQLFS+LLP D EY FPS
Sbjct: 181 LEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNICYWTGKQLFSLLLPSDLEYVFPSN 240
Query: 564 DVYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTV 622
V IS G+++ S+ GSSWLRD NLF L+K LD LYAAQ VLCEWLS+RG++V
Sbjct: 241 GVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEWLSMRGLSV 300
Query: 623 SLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLM-SAKDSESTRSLQ 681
SLSDLY+++ S SR+ ++DE+ GL+EA+ Q LM+ + +FL + ++S+++
Sbjct: 301 SLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSMGFD 360
Query: 682 GEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQ 741
E +S +Q+SA+LSQAS AFK VF DIQNL Y Y S DNSLLAM KAGSKGNLLKLVQ
Sbjct: 361 FEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSKGNLLKLVQ 420
Query: 742 HSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG-------DNTECAKSYIPSAVVENSFL 794
H++CLGLQ SL P+SFR P +LSC AWN ++ EC SYIPSAVV++SFL
Sbjct: 421 HNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPSAVVKSSFL 480
Query: 795 TGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
GLNPLECF+HS+T+RDSSFS +AD+ GTL R+LMFFMRDL YDGTVRNAYGNQIVQF
Sbjct: 481 AGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNAYGNQIVQF 540
Query: 855 SY----NIEGTSTPTGE--------IGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
SY I T TGE IG PVGSL+ACAISEAAY ALDQP+S LE+SPLL
Sbjct: 541 SYYEAEQIASTKV-TGEALESHNHAIGGHPVGSLAACAISEAAYCALDQPVSALESSPLL 599
Query: 903 NLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMII 962
NLK +LE G+ ++T S+FLS +LG+ HGFEYGALEVK HLE L+LS++VST MI
Sbjct: 600 NLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEVVSTVMIC 659
Query: 963 YSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLIS 1022
+SP+T H PW+CHFH+ KE +K LK S++D+L + +AA T+ +P++ I+
Sbjct: 660 FSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGNDLPNLHIT 719
Query: 1023 NKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVD 1082
KDCS +QKE ++ C+TV +VE K S L+T++ V+PFLL+TV+KGF KKVD
Sbjct: 720 CKDCSVAEVQKEKSE-ICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFSAFKKVD 778
Query: 1083 ILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNI 1142
ILWK+ SKS GELYL+V MS C W+AL++ C QI D+IDW RS+PD++
Sbjct: 779 ILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWERSYPDDV 838
Query: 1143 RSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQ 1202
+AYGID ++FL L SA+S+TGK ILPEHL++ A++L+ TGEFV L+AKGL LQ
Sbjct: 839 HDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGEFVPLSAKGLTLQ 898
Query: 1203 RKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYS 1262
RK + V SPF+QA F+NPG SF++AAK G D+LQGS+++L WGK PS+GTG FDI+YS
Sbjct: 899 RKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPSIGTGSSFDIMYS 958
Query: 1263 GEGRTLSKPVDVYNLLSTPVS-SKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFE 1321
G+G L++ ++VY LL V+ N K+ + K G+ + + E
Sbjct: 959 GKGYELAEQINVYTLLRNLVTVDTPNVKVTLGKDGGMDGMSLVRRLDRLDDLDKKSCKSE 1018
Query: 1322 TISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGI 1381
+S LR +++ND+ +LS +LK++L KY IG+ L+E DK + AL FHPRRNEK+G
Sbjct: 1019 -LSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIGRELNEADKCLAMMALQFHPRRNEKIGK 1077
Query: 1382 -EPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYR 1434
P +I++ YH E + SRCF +VR D ++EDFSY KC+ ALE+IAP+KA+ R
Sbjct: 1078 GAPKEIKIGYHQEFEGSRCFMVVRSDDTVEDFSYRKCMQHALELIAPQKAKTSR 1131
>gi|147816401|emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 1175 bits (3039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/937 (64%), Positives = 728/937 (77%), Gaps = 40/937 (4%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSS 60
MDN+F EE +VPSG+L GI +ST+ + EK+SVM+I AV+E+T+P+LG+PNP+ +CS+
Sbjct: 1 MDNDFLEEQ-QVPSGLLIGIKFDVSTEEDMEKISVMKIDAVNEITDPKLGVPNPSCQCST 59
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK-ERQKGAGS-SRK 118
CGAKD K CEGHFG IKFPFTILHPYFL+++ ++LN ICP CK+ R+ + KGA S SR+
Sbjct: 60 CGAKDTKKCEGHFGVIKFPFTILHPYFLTEVVQILNKICPGCKSTRQGQWVKGADSGSRR 119
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK------LPDDY 172
+ + CKYC N WYP M+FK+SSKDL KTAIIVE++EKL KK +K LP DY
Sbjct: 120 LRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDY 179
Query: 173 WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNN 232
W FIP D QQEEN + PNR+VLS QV YLLKD+DP +EF+ D+ FL C PVTPNN
Sbjct: 180 WDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNN 239
Query: 233 HRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISK---LHLDKSS 289
HRVTE+ HA S+ + L FD +R KK+VD+RG ELS V DCLK SK L +KS+
Sbjct: 240 HRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKASNLRSEKST 299
Query: 290 RKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAE 349
KDSA S SGL+WIK+V+LGKR + FRM+V GDP ++L EIGIPC +AE
Sbjct: 300 SKDSA----------SKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAE 349
Query: 350 RLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDG 409
L ISE LNSWNWE+++ + RLLEKG+ YV RKG L +RR++ + GDIIYRPLTDG
Sbjct: 350 ELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDG 409
Query: 410 DIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGAR 469
DIVLINRPPSIH HS+IAL+VKVLP++SVV+INPLCCSPF GDFDGDCLHGYIPQ++ +R
Sbjct: 410 DIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSR 469
Query: 470 VELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL 529
VEL+ELVAL++QLIN+QSGRNLLSL QDSL+AAHL+MED VLL+ QMQQL+MFCP++
Sbjct: 470 VELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQ 529
Query: 530 SPDIFK--ISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLI-SAEGSSWLRDYEG 586
SP I K + VW+GKQLFSMLLPP F Y FP V IS G+LI S++GS+WLRD +G
Sbjct: 530 SPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDG 589
Query: 587 NLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
NLF L+K + K LDFLYAAQEVLCEWLS+RG++VSLSD+YL+S S SRK ++DE+F G
Sbjct: 590 NLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCG 649
Query: 647 LREAQDTCNFQQLMVDSHMNFLM-SAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
L A+ TC+F+QL+VDS NFL+ S +++++ + L YE+Q SAAL Q+SV AFK
Sbjct: 650 LLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQ 709
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
F DIQNL Y+Y +KDNSLLAM KAGSKGNLLKLVQ LCLGLQHSL PLSF+ PH+LSC
Sbjct: 710 KFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSC 769
Query: 766 AAWNR-----LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
AAWN+ L D +E A+SYIP AVVENSFL GLNPLECF+HSVTSRDSSFSDNADL
Sbjct: 770 AAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADL 829
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG---------EIGDQ 871
PGTLTRRLMFFMRDL AYDGTVRNAYGNQ+VQFSYNIE TSTP+ ++G Q
Sbjct: 830 PGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQ 889
Query: 872 PVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVL 908
PVGS+SACAISEAAYSALDQPISLLE SPLLNLKN L
Sbjct: 890 PVGSISACAISEAAYSALDQPISLLEPSPLLNLKNHL 926
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/317 (61%), Positives = 243/317 (76%), Gaps = 3/317 (0%)
Query: 902 LNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMI 961
L L+ VLECG +KS AD+T+SLFLS KL KR+HGFEYGALEVKNHLE L+ SDIVST MI
Sbjct: 1065 LILQRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMI 1124
Query: 962 IYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLI 1021
++SPQ GS HFSPW+CHFHV +EI K+ LK HSIID+LY +C +AR E KI++PD+ I
Sbjct: 1125 VFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQI 1184
Query: 1022 SNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKV 1081
++KDC ++M+KE +D FC+TV IV N K++ I L+T++ V+PFLL VVKG ++KKV
Sbjct: 1185 TSKDC-FVDMEKEDSDCFCITVSIV-NSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKV 1242
Query: 1082 DILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDN 1141
DILW D S S G LYLRV +SG C + W LM+ C QIMDMIDW RSHPDN
Sbjct: 1243 DILWNDNPD-SDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDN 1301
Query: 1142 IRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLAL 1201
I + YGIDAG ++FL +L+SAISD GK +LPEHLL+VA+ LSATGEFVGLNAKG+A
Sbjct: 1302 IHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMAR 1361
Query: 1202 QRKHSSVSSPFVQAFFS 1218
Q++ +S+SSPF+Q FS
Sbjct: 1362 QKELTSISSPFMQGCFS 1378
>gi|68300847|gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
Length = 1112
Score = 1094 bits (2829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/1117 (51%), Positives = 744/1117 (66%), Gaps = 35/1117 (3%)
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKG 385
FR VV GDP I++ EIG+P ++A+ + +S+ + WNW++L C L G+ V R G
Sbjct: 1 FRTVVVGDPRIRVDEIGLPIEIAKNMLVSDNIYLWNWDKLESCCDLMLRRNGQFSVTRDG 60
Query: 386 GLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLC 445
+R D L GD IYRPL DGDIVLINRPPSIH HSLIAL+VK+LPI+SVV+INPL
Sbjct: 61 QKTCVRSADMLRTGDSIYRPLIDGDIVLINRPPSIHQHSLIALSVKILPINSVVSINPLT 120
Query: 446 CSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
CSP GDFDGDCLHGY+PQ++ RVEL ELV L+KQL+N QSG+NLLSL QDSLTAAHL+
Sbjct: 121 CSPLRGDFDGDCLHGYVPQSVNTRVELKELVTLNKQLVNGQSGQNLLSLSQDSLTAAHLI 180
Query: 506 MEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS--KDSVWSGKQLFSMLLPPDFEYTFPSK 563
+D V L+ +MQQLQMF + P I + + + S W+GKQLFS LLP DFE++ S
Sbjct: 181 SQDGVFLNKPEMQQLQMFSAWIPMLPAIIQSTSRETSFWTGKQLFSQLLPLDFEFSNASN 240
Query: 564 DVYISGGKLIS-AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTV 622
V I G+L+S ++GSSWLRD NLFQ L++ +K LD L+AAQEVLCEWLS RG++V
Sbjct: 241 GVGIKHGELVSFSDGSSWLRDSGENLFQCLLRHCPEKTLDILHAAQEVLCEWLSRRGLSV 300
Query: 623 SLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQG 682
SLSDL L+S SRK L+D+I GL EA+ + LMV + FL+ + +
Sbjct: 301 SLSDLCLSSDPQSRKNLLDDIACGLEEAEKMSDISLLMVGHNQRFLIENSEEDEDMLKSK 360
Query: 683 EHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQH 742
EHL +Q SA L QAS+ A K VF D+QNL Y Y NSLLAM KAGSKGNL KL QH
Sbjct: 361 EHLYVAQQTSAELCQASLFASKSVFRDMQNLIYHYAGDTNSLLAMLKAGSKGNLQKLFQH 420
Query: 743 SLCLGLQHSLAPLSFRFPHELSCAAWNR-------LRAGDNTECAKSYIPSAVVENSFLT 795
S+CLGLQHSL P+SF PH LSCA+WN R E SYIP VV +S+L
Sbjct: 421 SMCLGLQHSLTPVSFSMPHYLSCASWNNQKNHLSLYRLDGTREILDSYIPCTVVSSSYLM 480
Query: 796 GLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
GLNPLE F+HS+T+RDSSFS AD+ GTLTR+LMFFMRD+ T YDGTVRN+YG+QIVQF
Sbjct: 481 GLNPLESFLHSLTTRDSSFSGQADVSGTLTRKLMFFMRDIITGYDGTVRNSYGSQIVQFD 540
Query: 856 YNIEGTSTPTGEI--GDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
Y S ++ G PVGSL+ACAISEAAYSALDQP+S LE SPL+ LK VL+CG K
Sbjct: 541 YGTGDMSAVNSDVLMGGHPVGSLAACAISEAAYSALDQPVSALEPSPLIALKKVLDCGVK 600
Query: 914 KSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHF 973
+ ++ SLFLS +LGK +GFE+GALEVK+H+E L+ S++VS I +S T +
Sbjct: 601 NNTGGKSASLFLSRRLGKWVNGFEFGALEVKDHMESLLFSEVVSEVTISFS--TERRTNI 658
Query: 974 SPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQK 1033
SPW+C+F + KE+ + LK S++ +L C A ++K+ +P++LI NKDCS + +
Sbjct: 659 SPWVCNFCINKEVFMKRNLKLESVVHTLRANCNATPKKMKLKLPNLLIENKDCSEADFHE 718
Query: 1034 ECNDAFCVTVMIVEN---------FKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDIL 1084
+ + C++V + +N K I L+ ++ V+P LL+TVVKGF E KKVDIL
Sbjct: 719 D-SSRICISVAVSQNELSNLHFGSLKEYEI-LDYLRNMVIPVLLRTVVKGFPEFKKVDIL 776
Query: 1085 WKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRS 1144
WKD+Q S+ S GE Y+RV MS C W+ L+ +I +IDW RSHPD++
Sbjct: 777 WKDEQSRSRFSKCSSGEPYVRVFMSENCERARFWNILVEKSLRIRSLIDWDRSHPDDVHD 836
Query: 1145 FCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRK 1204
+ A+GID F+ +L SAIS+TGK ILPEHL+ AN LS TGEFV LNAKGLA QRK
Sbjct: 837 YGEAFGIDTAWMCFVNSLNSAISETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRK 896
Query: 1205 HSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGE 1264
++++SPFVQA FSNP FIKAAK G +DNLQGSVD+L WG+ P +GTGG FDIIYSG+
Sbjct: 897 EATINSPFVQACFSNPSDCFIKAAKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGK 956
Query: 1265 GRTLSKPVDVYNLLSTPVS-SKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETI 1323
G SKP DVY+LL++ V +K +EK+K+ G+ + L +
Sbjct: 957 GHEPSKPTDVYSLLNSQVGFAKPSEKIKL---------PVQFTSGNDQSQNLKTNGRKRF 1007
Query: 1324 SRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEP 1383
G+ +++ +S ALK++LH+Y+ +L +DKT +RAL +HPR EK G
Sbjct: 1008 LAGMKSLRSAEDEIREVSLALKRMLHEYASDCQLRGEDKTLALRALQYHPRWEEKTGAGT 1067
Query: 1384 PDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIG 1420
+I+V HP+H+ SRCF +V+ DG+ ED SY K + G
Sbjct: 1068 VEIKVGRHPDHKESRCFFVVKTDGTEEDISYRKSIQG 1104
>gi|308080362|ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|414869425|tpg|DAA47982.1| TPA: putative DNA dependent RNA polymerase D largest subunit family
protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent RNA polymerase D largest subunit family
protein [Zea mays]
Length = 1444
Score = 1067 bits (2759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/1488 (39%), Positives = 889/1488 (59%), Gaps = 109/1488 (7%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
E P IL I + T T+ EKLS M I VS+VT+P+LGLPN + +C +CG++ + C+
Sbjct: 6 EPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCD 65
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRV---CKYC 127
GHFG K T+ +PYF+ D+ LN ICP C + R+ G + R E+ +V CKYC
Sbjct: 66 GHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPRE----GIDTKRLEREKVQATCKYC 121
Query: 128 VRNPAQWYPRMRFK-LSS-------------KDLSGKTAIIVEIDEKLSKKNKK------ 167
++ ++ YP + FK LSS + + +I+ E +++ ++K
Sbjct: 122 SKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEG 181
Query: 168 LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFP 227
LP D+W F+P + +Q ++++ + +LS QV Y+LK DP + ++F+ ++ FL C P
Sbjct: 182 LPLDFWDFVPSENKQVQSNM--TKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLP 239
Query: 228 VTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR-DIELSH-------------L 273
VTPN HRV E+ + + +L FD+ T+ K+MVD R D H
Sbjct: 240 VTPNCHRVVEIGYGLP-DGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSR 298
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
V +CLK SKL+ K+ + S +++ G++W+KDVVL KR+D+ FR ++ GD
Sbjct: 299 VSECLKSSKLYSKKADGETS-----------TDTYGMKWLKDVVLSKRSDNVFRSIMVGD 347
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRI 393
P IKL EIGIP ++ L +SE ++S+N++ ++ + LL K EL++ R G L+ +R+
Sbjct: 348 PKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKA 407
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
D LE+GDI YRPL DGDI+LINRPPS+H HSLIAL+ K+LPI SVV+INPLCC+PF GDF
Sbjct: 408 DQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDF 467
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGDCLHGYIPQ+I +RVEL ELV+L QL+N Q GRNL+SL DSL AAHLL V L
Sbjct: 468 DGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLK 527
Query: 514 HLQMQQLQMFC-PHRFLSPDIFKIS--KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGG 570
++QQLQM C +P + K + S+W+GKQLFSMLLP ++ ++ +
Sbjct: 528 KSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSE 587
Query: 571 KLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
L + GSSWL++ LF + K+Y K LDFL +AQEVLCE+L++RG++VSLSDLY+
Sbjct: 588 VLTCSLGSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMF 647
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS-HMNFLMSAKDSESTRSLQGEHLSYEK 689
S SR+ L + + L EA++ +++++D ++ L ++E Q + +
Sbjct: 648 SDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCI---- 703
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ 749
Q + ++ ++S+ AFK VF D+ + ++ S DNS++ M AGSKG++LK Q + C+GLQ
Sbjct: 704 QSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQ 763
Query: 750 HSLAPLSFRFPHELSCAAWN-----RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
+ FR P +LSC +WN A +E AV++NSF+ GLNPLEC +
Sbjct: 764 LPASKFPFRIPSQLSCISWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLL 823
Query: 805 HSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
H+++ R + FS+NAD+PGTLTR+LM+ +RD+ AYDGTVR++YG QIVQFSY +
Sbjct: 824 HAISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY--DSVDDL 881
Query: 865 TGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLF 924
++G PVG +AC+ISEAAY AL+ P++ LE SPL+NL+ V +C ++ D LF
Sbjct: 882 VDKLG-APVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLF 940
Query: 925 LSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRK 984
LS L K R+G EY +LEVKNHLE + SD+V T MIIY +++ W HFH+ K
Sbjct: 941 LSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGH-DKIRNEGMWTTHFHINK 999
Query: 985 EIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVM 1044
+MK+ L ++D L ++ R +L ++P + IS + C + + + + C+ V
Sbjct: 1000 AMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKC-LVGDEGVKSSSCCIAV- 1057
Query: 1045 IVENFKRTSI-DLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELY 1103
V + +R SI L+TI+ V+P +L T++KGF E K V+I HD GEL
Sbjct: 1058 -VAHAERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEI--------QCPHD---GELL 1105
Query: 1104 LRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLE 1163
++V MS C W L N C +M++IDW S P N+ +YGID+ ++F+ +L+
Sbjct: 1106 VKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLK 1165
Query: 1164 SAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGAS 1223
SA +DTG+NI EHLL++A++LS TG+F L+++GL QR S+SSPF +A FS P S
Sbjct: 1166 SATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQS 1225
Query: 1224 FIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP-- 1281
FI AAK +VDNL GS+DA+ WGK P GT G F+I++SG+ + +Y+ L +
Sbjct: 1226 FINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKV 1285
Query: 1282 ---------VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLR-KS 1331
+ E +C+ C + G G+ TI + L K
Sbjct: 1286 RNFEKNHLDTRRQSTENASICRL------ACKSSKGSTTVNGVA----ITIDQDFLHAKV 1335
Query: 1332 WTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYH 1391
+++++ + +L+ +L +Y + ++E DK+ +I AL FH R EK+G+ +I++ +
Sbjct: 1336 SIWDNIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLN 1395
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
P H +RCF L+R D + EDFSYHKCV GA + I+P+ + + R
Sbjct: 1396 PSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKKLYYR 1443
>gi|219662986|gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 1063 bits (2748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/1488 (39%), Positives = 888/1488 (59%), Gaps = 109/1488 (7%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
E P IL I + T T+ EKLS M I VS+VT+P+LGLPN + +C +CG++ + C+
Sbjct: 6 EPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCD 65
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRV---CKYC 127
GHFG K T+ +PYF+ D+ LN ICP C + R+ G + R E+ +V CKY
Sbjct: 66 GHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPRE----GIDTKRLEREKVQATCKYY 121
Query: 128 VRNPAQWYPRMRFK-LSS-------------KDLSGKTAIIVEIDEKLSKKNKK------ 167
++ ++ YP + FK LSS + + +I+ E +++ ++K
Sbjct: 122 SKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEG 181
Query: 168 LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFP 227
LP D+W F+P + +Q ++++ + +LS QV Y+LK DP + ++F+ ++ FL C P
Sbjct: 182 LPLDFWDFVPSENKQVQSNM--TKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLP 239
Query: 228 VTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR-DIELSH-------------L 273
VTPN HRV E+ + + +L FD+ T+ K+MVD R D H
Sbjct: 240 VTPNCHRVVEIGYGLP-DGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSR 298
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
V +CLK SKL+ K+ + S +++ G++W+KDVVL KR+D+ FR ++ GD
Sbjct: 299 VSECLKSSKLYSKKADGETS-----------TDTYGMKWLKDVVLSKRSDNVFRSIMVGD 347
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRI 393
P IKL EIGIP ++ L +SE ++S+N++ ++ + LL K EL++ R G L+ +R+
Sbjct: 348 PKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKA 407
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
D LE+GDI YRPL DGDI+LINRPPS+H HSLIAL+ K+LPI SVV+INPLCC+PF GDF
Sbjct: 408 DQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDF 467
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGDCLHGYIPQ+I +RVEL ELV+L QL+N Q GRNL+SL DSL AAHLL V L
Sbjct: 468 DGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLK 527
Query: 514 HLQMQQLQMFC-PHRFLSPDIFKIS--KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGG 570
++QQLQM C +P + K + S+W+GKQLFSMLLP ++ ++ +
Sbjct: 528 KSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSE 587
Query: 571 KLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
L + GSSWL++ LF + K+Y K LDFL +AQEVLCE+L++RG++VSLSDLY+
Sbjct: 588 VLTCSLGSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMF 647
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS-HMNFLMSAKDSESTRSLQGEHLSYEK 689
S SR+ L + + L EA++ +++++D ++ L ++E Q + +
Sbjct: 648 SDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCI---- 703
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ 749
Q + ++ ++S+ AFK VF D+ + ++ S DNS++ M AGSKG++LK Q + C+GLQ
Sbjct: 704 QSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQ 763
Query: 750 HSLAPLSFRFPHELSCAAWN-----RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
+ FR P +LSC +WN A +E AV++NSF+ GLNPLEC +
Sbjct: 764 LPASKFPFRIPSQLSCISWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLL 823
Query: 805 HSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
H+++ R + FS+NAD+PGTLTR+LM+ +RD+ AYDGTVR++YG QIVQFSY +
Sbjct: 824 HAISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSY--DSVDDL 881
Query: 865 TGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLF 924
++G PVG +AC+ISEAAY AL+ P++ LE SPL+NL+ V +C ++ D LF
Sbjct: 882 VDKLG-APVGCRAACSISEAAYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLF 940
Query: 925 LSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRK 984
LS L K R+G EY +LEVKNHLE + SD+V T MIIY +++ W HFH+ K
Sbjct: 941 LSRHLKKYRYGLEYASLEVKNHLERVNFSDLVETIMIIYDGH-DKIRNEGMWTTHFHINK 999
Query: 985 EIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVM 1044
+MK+ L ++D L ++ R +L ++P + IS + C + + + + C+ V
Sbjct: 1000 AMMKKKRLGLRFVVDELAKEYDTTRDQLNNAIPSIRISRRKC-LVGDEGVKSSSCCIAV- 1057
Query: 1045 IVENFKRTSI-DLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELY 1103
V + +R SI L+TI+ V+P +L T++KGF E K V+I HD GEL
Sbjct: 1058 -VAHAERNSISQLDTIKTRVIPSILDTLLKGFLEFKDVEI--------QCPHD---GELL 1105
Query: 1104 LRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLE 1163
++V MS C W L N C +M++IDW S P N+ +YGID+ ++F+ +L+
Sbjct: 1106 VKVCMSEHCKGGRFWPTLQNACIPVMELIDWELSQPSNVSDIFCSYGIDSAWKYFVESLK 1165
Query: 1164 SAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGAS 1223
SA +DTG+NI EHLL++A++LS TG+F L+++GL QR S+SSPF +A FS P S
Sbjct: 1166 SATTDTGRNIRREHLLVIADSLSVTGQFHALSSQGLKQQRTRLSISSPFSEACFSRPAQS 1225
Query: 1224 FIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP-- 1281
FI AAK +VDNL GS+DA+ WGK P GT G F+I++SG+ + +Y+ L +
Sbjct: 1226 FINAAKQCSVDNLCGSLDAVAWGKEPFNGTSGPFEIMHSGKPHEPEQNESIYDFLCSSKV 1285
Query: 1282 ---------VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLR-KS 1331
+ E +C+ C + G G+ TI + L K
Sbjct: 1286 RNFEKNHLDTRRQSTENASICRL------ACKSSKGSTTVNGVA----ITIDQDFLHAKV 1335
Query: 1332 WTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYH 1391
+++++ + +L+ +L +Y + ++E DK+ +I AL FH R EK+G+ +I++ +
Sbjct: 1336 SIWDNIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLN 1395
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
P H +RCF L+R D + EDFSYHKCV GA + I+P+ + + R
Sbjct: 1396 PSHPGTRCFILLRNDDTTEDFSYHKCVQGAADSISPQLGSYLKKLYYR 1443
>gi|357129748|ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/1477 (40%), Positives = 866/1477 (58%), Gaps = 96/1477 (6%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
++VP L + + + + E LS I S+VT+ +LGLPN +C +CG+++ + C
Sbjct: 12 MDVPMAELKALKFDLLSSADIETLSSANIIEASDVTSAKLGLPNAAPQCVTCGSQNVRDC 71
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ-KGAGSSRKEQPRVCKYCV 128
+GH G IK P T+ PYFL + + LN ICP C T ++ R K + ++ ++P CKYC
Sbjct: 72 DGHSGVIKLPATVYSPYFLEQLVQFLNQICPGCWTPKQNRDTKRSDAATIQEP--CKYCS 129
Query: 129 RNPAQWYPRMRFK--------LSSKDLSGKTAIIVEIDEKLS----KKNKK----LPDDY 172
++ YP + FK LS L T+++ ++ KNK LP DY
Sbjct: 130 KD--GLYPSVIFKVLTSPRITLSKSKLQRNTSVMDKVSVTAEVINMSKNKSSLEVLPHDY 187
Query: 173 WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNN 232
W F+P + + N+ K +LS QV ++LK VD + +F ++ FL C PVTPN
Sbjct: 188 WNFVPHNQPPQPNTTK---ILLSPYQVFHILKQVDLELITKFAPRRELLFLSCLPVTPNR 244
Query: 233 HRVTEVPHAFSHEKKLFFDNWTRHLKKMVD-------YRGRDIELSHL--------VQDC 277
HRV E+P+ FS L +D+ T+ K+ VD YR + + S L V +C
Sbjct: 245 HRVAEMPYRFSDGPSLAYDDRTKAYKRTVDASKKIDDYR-QHPQFSVLASSFVTSRVMEC 303
Query: 278 LKISKLH---LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDP 334
L+ SKL+ DK S DS KKN +S G +W+KD +L KR+D FR ++ GDP
Sbjct: 304 LQSSKLYSKKTDKESSTDSYGTSVKKN----DSYGTKWLKDAILSKRSDYAFRSIMVGDP 359
Query: 335 NIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRID 394
I+L EIGIP +A+ L + E ++ +N++ +++ + LL K L R G L+ +R+ +
Sbjct: 360 KIRLHEIGIPMDLAD-LFVPEHVSIYNFKSINLKCNLHLLAKELLIARRNGKLIYVRKEN 418
Query: 395 ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFD 454
LE+GDI+YRPL DGD++L+NRPPS+H HSLIAL+ K+LP+ SVV INPL C+P GDFD
Sbjct: 419 QLEIGDIVYRPLQDGDLILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCAPLSGDFD 478
Query: 455 GDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSH 514
GDCLHGY+PQ+IG+RVEL ELV+L QL+N Q GR+L+SL DSL AAHLL VLL+
Sbjct: 479 GDCLHGYVPQSIGSRVELGELVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTSSGVLLNK 538
Query: 515 LQMQQLQMFCPHRFLSPDIFKIS----KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGG 570
+ QQLQM C +P I + +W+GKQLF MLLP ++ P ++I
Sbjct: 539 TEFQQLQMLCVSLSPTPVPSVIKSINPQGPLWTGKQLFGMLLPSGMNFS-PDPKLHIKDS 597
Query: 571 KLISAEGSS-WLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
++++ G S WL++ LF L K+Y + L+FL +AQ++LCE+L++RG++VSLSD+YL
Sbjct: 598 EVLACSGGSFWLQNNTSGLFSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSVSLSDIYL 657
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEK 689
S SR+ +E+ L EA++ Q+++ NF+ K + L SYE+
Sbjct: 658 FSDHYSRRKFAEEVNLALDEAEEAFRVTQILLSP--NFIPHLKCYDDCDDLSD---SYEQ 712
Query: 690 ----QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
Q + + ++S+ AFK VF D+ + ++ KDNS++AM AGSKG++LK VQ + C
Sbjct: 713 SDFVQSNLPIIKSSIMAFKSVFSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQAAC 772
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRA--GDNTECAKSYI----PSAVVENSFLTGLNP 799
+GLQ FR P EL+CA+WNR ++ D +E A+ + AV+ NSF+ GLNP
Sbjct: 773 VGLQLPAGKFPFRIPSELTCASWNRHKSLDCDISEGARKRLGGQNSHAVIRNSFIEGLNP 832
Query: 800 LECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI- 858
LEC +HS++ R + FS+NAD+PGTLT+ LM+ +RD+ AYDGTVR++YG QIVQF+Y+
Sbjct: 833 LECLLHSISGRANFFSENADVPGTLTKNLMYHLRDIYVAYDGTVRSSYGQQIVQFTYDTA 892
Query: 859 EGTSTPTGEIGD--QPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSN 916
E T G+ G+ PVGS +AC+ISEAAY ALD P++++E SPL+NL+ VL+C ++
Sbjct: 893 EDIYTDCGQEGEFGAPVGSWAACSISEAAYGALDHPVNVIEDSPLMNLQEVLKCQKGTNS 952
Query: 917 ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPW 976
D LFLS L K R+GFEY +L V+N+LE + S++V+T MI Y SPW
Sbjct: 953 LDHFGLLFLSKNLKKYRYGFEYASLYVQNYLEPMDFSELVNTVMIQYDGGGVQKTKGSPW 1012
Query: 977 ICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKEC- 1035
I HFH+ KE+MKR L +++ L A R +L +P + IS CS +C
Sbjct: 1013 ITHFHISKEMMKRKRLGLRLLVEDLTEHYNAKRDQLNNVIPKVYISKCKCSD---DDDCI 1069
Query: 1036 -NDAFCVTVMIVENFKRTSI-DLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASK 1093
N C+TV+ + TS L+ ++ +P LL T VKGF E K V+I +
Sbjct: 1070 NNQTCCITVVAQDESNSTSTSQLDDLKKRAIPVLLATPVKGFLEFKDVEIQCQRDN---- 1125
Query: 1094 SHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDA 1153
EL ++V+MS C W+ L C IM +IDW RS P ++ GID+
Sbjct: 1126 -------ELVVKVNMSKHCKSGIFWTTLKKACIGIMGLIDWERSRPGSVYDIFCPCGIDS 1178
Query: 1154 GLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFV 1213
++F+ +L S D G+NI EHLL+VA+TLS +G+F GL+++GL QR S SSPF
Sbjct: 1179 AWKYFVESLRSKTDDIGRNIHREHLLVVADTLSVSGQFHGLSSQGLKQQRTQLSTSSPFS 1238
Query: 1214 QAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVD 1273
+A FS P +FIKAAK +VDNL G++DAL WGK P GT G F I+Y+G+ + +
Sbjct: 1239 EACFSRPADTFIKAAKQCSVDNLCGNIDALAWGKEPPAGTSGPFKIMYAGKPHEPVQNEN 1298
Query: 1274 VYNLLSTPV--SSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKS 1331
+Y L P ++N S++ + G+ F G G + E G
Sbjct: 1299 IYGFLHNPEVWGPEKNHMETDSTRTKNASERWSS--GNATFNG-GTISVEQNYLGAKVGV 1355
Query: 1332 WTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYH 1391
W + ++ + L+ +L +Y + + + E DK+ VI AL FHPR EK+G+ DI++ H
Sbjct: 1356 W--DSIIDMRTCLQNMLREYQLDEYVVELDKSRVIEALRFHPRGREKIGVGIRDIKIGQH 1413
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPE 1428
P H +RCF LVR D + ED SY KCV GA + I+P+
Sbjct: 1414 PSHPGTRCFILVRNDDTTEDVSYKKCVQGAADSISPQ 1450
>gi|116309922|emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 1016 bits (2626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/1471 (39%), Positives = 863/1471 (58%), Gaps = 134/1471 (9%)
Query: 7 EEGLEV--PSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E LEV P L I + T ++ EKLS I + +VTN +LGLPN +C++CG++
Sbjct: 3 EPSLEVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSR 62
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK--ERQKGAGSSRKEQPR 122
+ C+GHFG IK T+ + YF+ ++ +LLN ICP C T+++ + +K G++ +
Sbjct: 63 SIRDCDGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKADGTTIQG--- 119
Query: 123 VCKYCVRNPAQWYPRMRFKL--------------SSKDLSGKTAIIVEIDEKLSKKNKK- 167
CKYC ++ ++ YP + FK+ + + K +II E+ ++ K+K
Sbjct: 120 TCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVAGGVAHKSKNK 179
Query: 168 -----LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
LP D+W FIP D Q +V +K+LS QV ++LK +DP + + ++ F
Sbjct: 180 APHETLPQDFWDFIPDDNQPPIFNV--TKKILSPYQVFHMLKKLDPELINQVTRRRELLF 237
Query: 223 LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISK 282
L C PVTPN HRV E+P+ S +L FD+ T+ K+MVD
Sbjct: 238 LSCLPVTPNCHRVAEMPYGHSDGPRLAFDDRTKAYKRMVD-------------------- 277
Query: 283 LHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIG 342
L+ KS + SA +++ G++W+KD++L KR+D+ FR ++ GDP I L EIG
Sbjct: 278 LYSKKSDDESSAS---------TDTYGIKWLKDIILSKRSDNAFRSIMVGDPKINLNEIG 328
Query: 343 IPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDII 402
IP +A L +SE+++S+N+E +++ + LL K L V R G L+ +R+ + LE+GDI
Sbjct: 329 IPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRKANQLEIGDIA 388
Query: 403 YRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYI 462
YR L DGD+VL+NRPPS+H HSLIAL+ K+L S V+INPLCC PF GDFDGDCLHGYI
Sbjct: 389 YRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGDFDGDCLHGYI 448
Query: 463 PQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM 522
PQ + +R+EL ELV+L QL+NQQ GR+L+SL DSL AAH L V L + QQLQM
Sbjct: 449 PQCLQSRIELEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFLEKAEFQQLQM 508
Query: 523 FCPHRFLS--PDIFKI--SKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEG 577
L+ P +FK S+ +W+GKQLF MLLP +F K ++I ++++ + G
Sbjct: 509 LSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQK-LHIKDSEVLTCSSG 567
Query: 578 SSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
S WL++ +LF + K Y K L+FL + Q+VLCE+L++ G++VSLSDLYL S SR+
Sbjct: 568 SFWLQNNTSSLFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLYLFSDHYSRR 627
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
L +E+ L EA++ +Q++++S + D RS E + Q S + +
Sbjct: 628 KLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGF-TQVSLPIIR 686
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
+S+ +FK VF D+ + +Y SKDNS++ M +GSKG++LK VQ + C+GLQ + F
Sbjct: 687 SSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGLQLPASKFPF 746
Query: 758 RFPHELSCAAWNRLRAGD------NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
R P +LSC +WNR ++ + +EC AV+ NSFL GLNPLEC +H+++ R
Sbjct: 747 RIPSQLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLECLLHAISGRA 806
Query: 812 SSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
+ FS+NAD+PGTLTR+LM+ +RD AYDGTVR++YG QIV+FSY+ T G D
Sbjct: 807 NFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYD-----TADGMYSDH 861
Query: 872 --------PVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
PVGS +AC+ISEAAY ALD P++ LE SPL+NL+ VL+C ++ D T L
Sbjct: 862 DLEGEPVAPVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLDHTGLL 921
Query: 924 FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVR 983
FLS L K R+GFEY +LEVK+HLE + SD+V T +MK
Sbjct: 922 FLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTE---------TMK------------ 960
Query: 984 KEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKEC--NDAFCV 1041
+KR GL+ I+ + Q R +L ++P + ISN CS N EC N CV
Sbjct: 961 ---IKRLGLE--FIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGN---ECVKNQTCCV 1012
Query: 1042 TVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGE 1101
+ M+V+ + L+ I+ V+P +L T++KGF E K V + ++ E
Sbjct: 1013 S-MVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKVQCQEDN-----------E 1060
Query: 1102 LYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTN 1161
L L+V MS C W+ L N C IM++IDW RS P+ + +YGID+ +FF+ +
Sbjct: 1061 LVLKVGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVES 1120
Query: 1162 LESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPG 1221
L S G+NI +HLL+VA+ LS +G+F GL+++GL QR S+SSPF +A FS P
Sbjct: 1121 LRSTTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPA 1180
Query: 1222 ASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP 1281
SFI AAK +VDNL G++DA+ WGK P G+ G F I+YSG+ + +Y+ L P
Sbjct: 1181 HSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKILYSGKSHETKQNEHIYDFLHNP 1240
Query: 1282 -VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETIS---RGVLRKSWTYNDV 1337
V + + + + + ++K + +G ++ IS + + K + ++
Sbjct: 1241 EVQALEKNVMDTYRKR---TEKTSKRRSALNSEGNATINGGAISFNQKFLNSKVGIWENI 1297
Query: 1338 LRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNS 1397
+ + +L+ +L +Y++ + ++E+DK+ +I AL FHPR +K+G+ +I++ +P H +S
Sbjct: 1298 IDMRTSLQNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHPSS 1357
Query: 1398 RCFSLVREDGSIEDFSYHKCVIGALEIIAPE 1428
RCF ++R D + DFSY+KCV+GA I+PE
Sbjct: 1358 RCFIVLRNDDTTADFSYNKCVLGAANSISPE 1388
>gi|222629403|gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
Length = 1623
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/1476 (36%), Positives = 813/1476 (55%), Gaps = 187/1476 (12%)
Query: 7 EEGLEV--PSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E LEV P L I + T ++ EKLS I + +VTN +LGLPN +C++CG++
Sbjct: 24 EPSLEVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSR 83
Query: 65 DRKACEG----------HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK--ERQKG 112
+ C+G HFG IK T+ + YF+ ++ +LLN ICP C T+++ + +K
Sbjct: 84 SIRDCDGKKKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKA 143
Query: 113 AGSSRKEQPRVCKYCVRNPAQWYPRMRFKL--------------SSKDLSGKTAIIVEID 158
G++ + CKYC ++ ++ YP + FK+ + + K +II E+
Sbjct: 144 DGTTIQ---GTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVA 200
Query: 159 EKLSKKNKK------LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIRE 212
++ K+K LP D+W FIP D Q +V +K+LS QV ++LK +DP +
Sbjct: 201 GGVAHKSKNKAPHETLPQDFWDFIPDDNQPPIFNV--TKKILSPYQVFHMLKKLDPELIN 258
Query: 213 EFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSH 272
+ D+ T+ K+MVD
Sbjct: 259 Q-------------------------------------DDRTKAYKRMVD---------- 271
Query: 273 LVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
L+ KS + SA +++ G +W+KD++L KR+D+ FR ++ G
Sbjct: 272 ----------LYSKKSDDESSAS---------TDTYGTKWLKDIILSKRSDNAFRSIMVG 312
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRR 392
DP I L EIGIP +A L +SE+++S+N+E +++ + LL K L V R G L+ +R+
Sbjct: 313 DPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRK 372
Query: 393 IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
+ LE+GDI YR L DGD+VL+NRPPS+H HSLIAL+ K+L S V+INPLCC PF GD
Sbjct: 373 ANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGD 432
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGDCLHGYIPQ + +R+EL ELV L QL+NQQ GR+L+SL DSL AAH L V L
Sbjct: 433 FDGDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFL 492
Query: 513 SHLQMQQLQMFCPHRFLSP--DIFKI--SKDSVWSGKQLFSMLLPPDFEYTFPSKDVYIS 568
+ QQLQM L+P +FK S+ +W+GKQLF MLLP +F K
Sbjct: 493 EKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQKLHIKD 552
Query: 569 GGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLY 628
L + GS WL++ +LF + K Y K L+FL + Q+VLCE+L++ G++VSLSDLY
Sbjct: 553 SEVLTCSSGSFWLQNNTSSLFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDLY 612
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYE 688
L S SR+ L +E+ L EA++ +Q++++S + D RS E +
Sbjct: 613 LFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGF- 671
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
Q S + ++S+ +FK VF D+ + +Y SKDNS++ M +GSKG++LK VQ + C+GL
Sbjct: 672 TQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVGL 731
Query: 749 QHSLAPLSFRFPHELSCAAWNRLRAGD------NTECAKSYIPSAVVENSFLTGLNPLEC 802
Q + FR P +LSC +WNR ++ + +EC AVV NSFL GLNPLEC
Sbjct: 732 QLPASKFPFRIPSQLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVVRNSFLDGLNPLEC 791
Query: 803 FIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI-EGT 861
+H+++ R + FS+NAD+PGTLTR+LM+ +RD AYDGTVR++YG QIV+FSY+ +G
Sbjct: 792 LLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADGM 851
Query: 862 STP---TGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNAD 918
+ GE G PVGS +AC+ISEAAY ALD P++ LE SPL+NL+ VL+C ++ D
Sbjct: 852 YSDHDLEGEPG-APVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSLD 910
Query: 919 QTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWIC 978
T LFLS L K R+GFEY +LEVK+HLE + SD+V T +I+Y +PWI
Sbjct: 911 HTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNPWIT 970
Query: 979 HFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQK----- 1033
HFH+ +E MK L I+ + Q R +L ++P + ISN + + M+
Sbjct: 971 HFHLNQETMKIKRLGLEFIVREIIDQYNTLRKQLNNAIPSVSISNSETLHLKMENKSGKL 1030
Query: 1034 --------EC--NDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDI 1083
EC N CVT M+V+ + L+ I+ V+P +L T++KGF E K V +
Sbjct: 1031 GKNLGTGNECVKNQTCCVT-MVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKV 1089
Query: 1084 LWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIR 1143
++ EL L+V MS C W+ L N C IM++IDW RS P+ +
Sbjct: 1090 QCQEDN-----------ELVLKVGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERVY 1138
Query: 1144 SFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQR 1203
+YGID+ +FF+ +L S G+NI +HLL+VA+ LS
Sbjct: 1139 DNFCSYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLS----------------- 1181
Query: 1204 KHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSG 1263
P SFI AAK +VDNL G++DA+ WGK P G+ G F I+YSG
Sbjct: 1182 ---------------RPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSG 1226
Query: 1264 EGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFET 1322
+ + +Y+ L P V + + + + + ++K + +G ++
Sbjct: 1227 KSHETKQNEHIYDFLHNPEVQALEKNVMDTYRKR---TEKTSKRRSALNSEGNATINGGA 1283
Query: 1323 IS---RGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKL 1379
IS + + K + +++ + +L+ +L +Y++ + ++E+DK+ ++ AL FHPR +K+
Sbjct: 1284 ISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKI 1343
Query: 1380 GIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYH 1415
G+ +I++ +P H +SRCF ++R D + DFSY+
Sbjct: 1344 GVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYN 1379
>gi|218195401|gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
Length = 1598
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/1477 (36%), Positives = 821/1477 (55%), Gaps = 189/1477 (12%)
Query: 7 EEGLEV--PSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E LEV P L I + T ++ EKLS I + +VTN +LGLPN +C++CG++
Sbjct: 3 EPSLEVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSR 62
Query: 65 DRKACEG----------HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK--ERQKG 112
+ C+G HFG IK T+ + YF+ ++ +LLN ICP C T+++ + +K
Sbjct: 63 SIRDCDGKKKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKA 122
Query: 113 AGSSRKEQPRVCKYCVRNPAQWYPRMRFKL--------------SSKDLSGKTAIIVEID 158
G++ + CKYC ++ ++ YP + FK+ + + K +II E+
Sbjct: 123 DGTTIQ---GTCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVA 179
Query: 159 EKLSKKNKK------LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIRE 212
++ K+K LP D+W FIP D Q +V +K+LS QV ++LK +DP +
Sbjct: 180 GGVAHKSKNKAPHETLPQDFWDFIPDDNQPPIFNV--TKKILSPYQVFHMLKKLDPELIN 237
Query: 213 EFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSH 272
+ D+ T+ K+MVD
Sbjct: 238 Q-------------------------------------DDRTKAYKRMVD---------- 250
Query: 273 LVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
L+ KS + SA +++ G++W+KD++L KR+D+ FR ++ G
Sbjct: 251 ----------LYSKKSDDESSAS---------TDTYGIKWLKDIILSKRSDNAFRSIMVG 291
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRR 392
DP I L EIGIP +A L +SE+++S+N+E +++ + LL K L V R G L+ +R+
Sbjct: 292 DPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRK 351
Query: 393 IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
+ LE+GDI YR L DGD+VL+NRPPS+H HSLIAL+ K+L S V+INPLCC PF GD
Sbjct: 352 ANQLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGD 411
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGDCLHGYIPQ + +R+EL ELV+L QL+NQQ GR+L+SL DSL AAH L V L
Sbjct: 412 FDGDCLHGYIPQCLQSRIELEELVSLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFL 471
Query: 513 SHLQMQQLQMFCPHRFLSP--DIFKI--SKDSVWSGKQLFSMLLPPDFEYTFPSKDVYIS 568
+ QQLQM L+P +FK S+ +W+GKQLF MLLP +F K ++I
Sbjct: 472 EKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTGKQLFGMLLPYGMNISFDQK-LHIK 530
Query: 569 GGKLIS-AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL 627
++++ + GS WL++ +LF + K Y K L+FL + Q+VLCE+L++ G++VSLSDL
Sbjct: 531 DSEVLTCSSGSFWLQNNTSSLFSVMFKEYGCKALEFLSSTQDVLCEFLTMWGLSVSLSDL 590
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
YL S SR+ L +E+ L EA++ +Q++++S + D RS E +
Sbjct: 591 YLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQSGF 650
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
Q S + ++S+ +FK VF D+ + +Y SKDNS++ M +GSKG++LK VQ + C+G
Sbjct: 651 -TQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTACVG 709
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGD------NTECAKSYIPSAVVENSFLTGLNPLE 801
LQ + FR P +LSC +WNR ++ + +EC AV+ NSFL GLNPLE
Sbjct: 710 LQLPASKFPFRIPSQLSCVSWNRHKSLNCEITDGTSECVGGQDMYAVIRNSFLDGLNPLE 769
Query: 802 CFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI-EG 860
C +H+++ R + FS+NAD+PGTLTR+LM+ +RD AYDGTVR++YG QIV+FSY+ +G
Sbjct: 770 CLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDTADG 829
Query: 861 TSTP---TGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNA 917
+ GE G PVGS +AC+ISEAAY ALD P++ LE SPL+NL+ VL+C ++
Sbjct: 830 MYSDHDLEGEPG-APVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGTNSL 888
Query: 918 DQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWI 977
D T LFLS L K R+GFEY +LEVK+HLE + SD+V T +I+Y +PWI
Sbjct: 889 DHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDTVIILYGGSDMQKTKGNPWI 948
Query: 978 CHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQK---- 1033
HFH+ +E MK L I+ + Q R +L ++P + ISN + + M+
Sbjct: 949 THFHLSQETMKIKRLGLEFIVREIIDQYNTLRKQLNNAIPSVSISNSETLHLKMENKSGK 1008
Query: 1034 ---------EC--NDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVD 1082
EC N CV+ M+V+ + L+ I+ V+P +L T++KGF E K V
Sbjct: 1009 LGKNLGTGNECVKNQTCCVS-MVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVK 1067
Query: 1083 ILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNI 1142
+ ++ EL L+V MS C W+ L N C IM++IDW RS P+ +
Sbjct: 1068 VQCQEDN-----------ELVLKVGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERV 1116
Query: 1143 RSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQ 1202
+YGID+ +FF+ +L S G+NI +HLL+VA+ LS
Sbjct: 1117 YDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLS---------------- 1160
Query: 1203 RKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYS 1262
P SFI AAK +VDNL G++DA+ WGK P G+ G F I+YS
Sbjct: 1161 ----------------RPAHSFINAAKRDSVDNLSGTLDAIAWGKEPCTGSSGPFKILYS 1204
Query: 1263 GEGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFE 1321
G+ + +Y+ L P V + + + + + ++K + +G ++
Sbjct: 1205 GKSHETKQNEHIYDFLHNPEVQALEKNVMDTYRKR---TEKTSKRRSALNSEGNATINGG 1261
Query: 1322 TIS---RGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEK 1378
IS + + K + +++ + +L+ +L +Y++ + ++E+DK+ +I AL FHPR +K
Sbjct: 1262 AISFNQKFLNSKVGIWENIIDMRTSLQNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDK 1321
Query: 1379 LGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYH 1415
+G+ +I++ +P H +SRCF ++R D + DFSY+
Sbjct: 1322 IGVGIREIKIGVNPGHPSSRCFIVLRNDDTTADFSYN 1358
>gi|218202606|gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
Length = 1384
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1145 (41%), Positives = 701/1145 (61%), Gaps = 70/1145 (6%)
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++ G +W+KD++L KR+D+ FR ++ GDP I L EIGIP +A L +SE+++ +N+E +
Sbjct: 269 DTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETI 328
Query: 366 SVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
++ + LL K L V R G L+ +R+ + LE+GDI YR L DGD+VL+NRPPS+H HSL
Sbjct: 329 NLKCNLHLLTKEVLLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSL 388
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
IAL+ K+LPI S V INPLCC PF GDFDGDCLHGY+PQ + +RVEL LV+L Q++N
Sbjct: 389 IALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNA 448
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS----KDSV 541
Q GR+L+SL DSL AAH L V L + QQLQ+ C +P+ + + S+
Sbjct: 449 QDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGSL 508
Query: 542 WSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYEGNLFQYLIKRYRDKV 600
W+GKQLF MLLP +F K ++I ++++ + GS WL++ ++F + K Y K
Sbjct: 509 WTGKQLFGMLLPSGMNISFDQK-LHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSKA 567
Query: 601 LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLM 660
L+FL + Q+VLCE+L+++G++VSLSDLYL S SRK L +EI L EA++ +Q++
Sbjct: 568 LEFLSSTQDVLCEFLTMKGLSVSLSDLYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQIL 627
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYE-KQRSAALSQASVDAFKHVFWDIQNLAYKYGS 719
+++ + + K + +L H + Q S + ++S+ FK VF D+ + ++ S
Sbjct: 628 LNTVS--IPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHVS 685
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRA------ 773
KDNS++AM +GSKG++LK VQ + C+GLQ + FR P ELSC +WNR ++
Sbjct: 686 KDNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSLNCEIT 745
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMR 833
+ +EC AV+ NSFL GLNPLEC +H+++ R + FS+NAD+PGTLTR+LM+ +R
Sbjct: 746 NNTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLR 805
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNI-EGTSTP---TGEIGDQPVGSLSACAISEAAYSAL 889
D AYDGTVR++YG QIVQFSY+ +G + GE G PVGS +AC+ISEAAY AL
Sbjct: 806 DTYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPG-APVGSWAACSISEAAYGAL 864
Query: 890 DQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLEC 949
D P++ LE SPL+NL+ VL+C +A T LFLS L K R+GFEY +LEVK+HLE
Sbjct: 865 DHPVNALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFEYASLEVKDHLEL 924
Query: 950 LMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAAR 1009
+ SD+V T E MK L+ I+ L Q A R
Sbjct: 925 VDFSDLVDT--------------------------ETMKIKRLRLGFIVRELIDQYNALR 958
Query: 1010 TELKISVPDMLISNKDCSSINMQKEC--NDAFCVTVMIVENFKRTSIDLETIQMWVMPFL 1067
+L ++P + IS CS N EC N + C+T M+ + ++ L+ I+ V+P +
Sbjct: 959 KKLNNTIPSVCISYSKCSVGN---ECVKNRSCCIT-MVAQVESNSTSQLDIIKERVIPSI 1014
Query: 1068 LKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQ 1127
L T++KGF E + V + + DS EL ++V MS C W+ L N C
Sbjct: 1015 LATLLKGFLEFENVKV---------ECQQDS--ELVVKVGMSEHCKTGKFWATLQNACIP 1063
Query: 1128 IMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSA 1187
IM++IDW RS P+ + +YGID+ ++F+ +L S G+N+ +HLL+VA+ LS
Sbjct: 1064 IMELIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNVHRQHLLVVADCLSI 1123
Query: 1188 TGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGK 1247
+G+F GL+++GL QR S+SSPF +A FS P SFI AAK +VDNL G++DA+ WGK
Sbjct: 1124 SGQFHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGK 1183
Query: 1248 VPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAK 1306
P GT G F ++YSG+ + + ++Y+ L P V + + + K + ++K +
Sbjct: 1184 EPCAGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMDTYKQR---TEKPSKQ 1240
Query: 1307 FGDFAFKGLGNLDFETIS---RGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKT 1363
F+ KG ++ TIS + + K + +++ + L+ +L +Y++ + ++E+DK+
Sbjct: 1241 RSAFSSKGNATINGGTISVNQKFLDSKVGIWENIIDMRTCLQNMLREYTLNEVVTEQDKS 1300
Query: 1364 TVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALE 1423
+I AL FHPR +K+G+ +I++ +P H NSRCF + R D + DFSY+KCV+GA
Sbjct: 1301 CLIEALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAAN 1360
Query: 1424 IIAPE 1428
I+PE
Sbjct: 1361 SISPE 1365
Score = 134 bits (337), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 29/228 (12%)
Query: 7 EEGLEV--PSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E LEV P L + + T ++ EKLS I + +VTN +LGLPN +C++CG++
Sbjct: 29 EPSLEVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQ 88
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK--ERQKGAGSSRKEQPR 122
+ C+GHFG IK T+ +P F+ ++ +LLN ICP C T+++ + +K G++ +
Sbjct: 89 SVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTKKTDGTTIQ---T 145
Query: 123 VCKYCVRNPAQWYPRMRFKL--------------SSKDLSGKTAIIVEIDEKLSKKNKK- 167
CKYC ++ A+ YP + FK+ + + K +II E+ ++ +K
Sbjct: 146 TCKYCSKDGAKLYPSVIFKMLTSPRVTLSRSKLHRNTSVMDKISIIAEVAGGVTHNSKNK 205
Query: 168 -----LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI 210
LP D+W F+P D Q +++V +K+LS QV ++LK++DP +
Sbjct: 206 APHETLPQDFWDFVPDDNQPPQSNVA--KKILSPYQVFHMLKNLDPEL 251
>gi|222642066|gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
Length = 1384
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/1144 (41%), Positives = 693/1144 (60%), Gaps = 68/1144 (5%)
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++ G +W+KD++L KR+D+ FR ++ GDP I L EIGIP +A L +SE+++ +N+E +
Sbjct: 269 DTYGTKWLKDIILSKRSDNAFRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETI 328
Query: 366 SVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
++ + LL K L V R G L+ +R+ + LE+GDI YR L DGD+VL+NRPPS+H HSL
Sbjct: 329 NLKCNLHLLTKEVLLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSL 388
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
IAL+ K+LPI S V INPLCC PF GDFDGDCLHGY+PQ + +RVEL LV+L Q++N
Sbjct: 389 IALSAKLLPIQSAVAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNA 448
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS----KDSV 541
Q GR+L+SL DSL AAH L V L + QQLQ+ C +P+ + + S+
Sbjct: 449 QDGRSLVSLTHDSLAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGSL 508
Query: 542 WSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVL 601
W+GKQLF MLLP +F K L + GS WL++ ++F + K Y K L
Sbjct: 509 WTGKQLFGMLLPSGMNISFDQKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSKAL 568
Query: 602 DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMV 661
+FL + Q+VLCE+L+++G++VSLSD YL S SRK L +EI L EA++ +Q+++
Sbjct: 569 EFLSSTQDVLCEFLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQILL 628
Query: 662 DSHMNFLMSAKDSESTRSLQGEHLSYE-KQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
++ + + K + +L H + Q S + ++S+ FK VF D+ + ++ SK
Sbjct: 629 NTVS--IPNLKHYDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHVSK 686
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRA------G 774
DNS++AM +GSKG++LK VQ + C+GLQ + FR P ELSC +WNR ++
Sbjct: 687 DNSMMAMINSGSKGSVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSLNCEITN 746
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRD 834
+ +EC AV+ NSFL GLNPLEC +H+++ R + FS+NAD+PGTLTR+LM+ +RD
Sbjct: 747 NTSECMAGQNMYAVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRD 806
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNI-EGTSTP---TGEIGDQPVGSLSACAISEAAYSALD 890
AYDGTVR++YG QIVQFSY+ +G + GE G PVGS +AC+ISEAAY ALD
Sbjct: 807 TYVAYDGTVRSSYGRQIVQFSYDTADGMNNDHDLEGEPG-APVGSWAACSISEAAYGALD 865
Query: 891 QPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECL 950
P++ LE SPL+NL+ VL+C +A T LFLS L K R+GFEY +LEVK+HLE +
Sbjct: 866 HPVNALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFEYASLEVKDHLERV 925
Query: 951 MLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAART 1010
SD+V T E MK L+ I+ L Q A R
Sbjct: 926 DFSDLVDT--------------------------ETMKIKRLRLGFIVRELIDQYNALRK 959
Query: 1011 ELKISVPDMLISNKDCSSINMQKEC--NDAFCVTVMIVENFKRTSIDLETIQMWVMPFLL 1068
+L +P + IS CS N EC N + CVT M+ + ++ L+ I+ V+P +L
Sbjct: 960 KLNNMIPSVCISYSKCSVGN---ECVKNRSCCVT-MVAQVESNSTSQLDIIKERVIPSIL 1015
Query: 1069 KTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQI 1128
T++KGF E + V + + DS EL ++V MS C W+ L N C I
Sbjct: 1016 ATLLKGFLEFENVKV---------ECQQDS--ELVVKVGMSEHCKTGKFWATLQNACIPI 1064
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
M++IDW RS P+ + +YGID+ ++F+ +L S G+NI +HLL+VA+ LS +
Sbjct: 1065 MELIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSIS 1124
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G+F GL+++GL QR S+SSPF +A FS P SFI AAK +VDNL G++DA+ WGK
Sbjct: 1125 GQFHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKE 1184
Query: 1249 PSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAKF 1307
P GT G F ++YSG+ + + ++Y+ L P V + + + K + ++K +
Sbjct: 1185 PCAGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMDTYKQR---TEKPSKQR 1241
Query: 1308 GDFAFKGLGNLDFETIS---RGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTT 1364
F+ KG ++ TIS + + K + +++ + L+ +L +Y++ + ++E+DK+
Sbjct: 1242 SAFSSKGNATINGGTISVNQKFLDSKVGIWENIIDMRTCLQNMLREYTLNEVVTEQDKSC 1301
Query: 1365 VIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEI 1424
+I AL FHPR +K+G+ +I++ +P H NSRCF + R D + DFSY+KCV+GA
Sbjct: 1302 LIEALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANS 1361
Query: 1425 IAPE 1428
I+PE
Sbjct: 1362 ISPE 1365
Score = 134 bits (337), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 29/228 (12%)
Query: 7 EEGLEV--PSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E LEV P L + + T ++ EKLS I + +VTN +LGLPN +C++CG++
Sbjct: 29 EPSLEVKMPEADLKAVKFSLMTSSDMEKLSSASIIEMCDVTNAKLGLPNGAPQCATCGSQ 88
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK--ERQKGAGSSRKEQPR 122
+ C+GHFG IK T+ +P F+ ++ +LLN ICP C T+++ + +K G++ +
Sbjct: 89 SVRDCDGHFGVIKLAATVHNPCFIEEVVQLLNQICPGCLTLKQNGDTKKTDGTTIQT--- 145
Query: 123 VCKYCVRNPAQWYPRMRFKL--------------SSKDLSGKTAIIVEIDEKLSKKNKK- 167
CKYC ++ A+ YP + FK+ + + K +II E+ ++ +K
Sbjct: 146 TCKYCSKDGAKLYPSVIFKMLTSPRVTLSRSKLHRNTSVMDKISIIAEVAGGVTHNSKNK 205
Query: 168 -----LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI 210
LP D+W F+P D Q +++V +K+LS QV ++LK++DP +
Sbjct: 206 APHETLPQDFWDFVPDDNQPPQSNVA--KKILSPYQVFHMLKNLDPEL 251
>gi|219662982|gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
mays]
Length = 871
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/888 (42%), Positives = 550/888 (61%), Gaps = 68/888 (7%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
E P IL I + T T+ EKLS M I VS+VT+P+LGLPN + +C +CG++ + C+
Sbjct: 6 EPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCD 65
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRV---CKYC 127
GHFG K T+ +PYF+ D+ LN ICP C + R+ G + R E+ +V CKYC
Sbjct: 66 GHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPRE----GIDTKRLEREKVQATCKYC 121
Query: 128 VRNPAQWYPRMRFK-LSS-------------KDLSGKTAIIVEIDEKLSKKNKK------ 167
++ ++ YP + FK LSS + + +I+ E +++ ++K
Sbjct: 122 SKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEG 181
Query: 168 LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFP 227
LP D+W F+P + +Q ++++ + +LS QV Y+LK DP + ++F+ ++ FL C P
Sbjct: 182 LPLDFWDFVPSENKQVQSNM--TKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLP 239
Query: 228 VTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR-DIELSH-------------L 273
VTPN HRV E+ + + +L FD+ T+ K+MVD R D H
Sbjct: 240 VTPNCHRVVEIGYGLP-DGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSR 298
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
V +CLK SKL+ K+ + S +++ G++W+KDVVL KR+D+ FR ++ GD
Sbjct: 299 VSECLKSSKLYSKKADGETS-----------TDTYGMKWLKDVVLSKRSDNVFRSIMVGD 347
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRI 393
P IKL EIGIP ++ L +SE ++S+N++ ++ + LL K EL++ R G L+ +R+
Sbjct: 348 PKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKA 407
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
D LE+GDI YRPL DGDI+LINRPPS+H HSLIAL+ K+LPI SVV+INPLCC+PF GDF
Sbjct: 408 DQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDF 467
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGDCLHGYIPQ+I +RVEL ELV+L QL+N Q GRNL+SL DSL AAHLL V L
Sbjct: 468 DGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLK 527
Query: 514 HLQMQQLQMFCPH-RFLSPDIFKIS--KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGG 570
++QQLQM C +P + K + S+W+GKQLFSMLLP ++ ++ +
Sbjct: 528 KSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSE 587
Query: 571 KLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
L + GSSWL++ LF + K+Y K LDFL +AQEVLCE+L++RG++VSLSDLY+
Sbjct: 588 VLTCSLGSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMF 647
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS-HMNFLMSAKDSESTRSLQGEHLSYEK 689
S SR+ L + + L EA++ +++++D ++ L ++E Q + +
Sbjct: 648 SDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCI---- 703
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ 749
Q + ++ ++S+ AFK VF D+ + ++ S DNS++ M AGSKG++LK Q + C+GLQ
Sbjct: 704 QSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQ 763
Query: 750 HSLAPLSFRFPHELSCAAWN-----RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
+ FR P +LSC +WN A +E AV++NSF+ GLNPLEC +
Sbjct: 764 LPASKFPFRIPSQLSCISWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLL 823
Query: 805 HSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIV 852
H+++ R + FS+NAD+PGTLTR+LM+ +RD+ AYDGTVR++YG QIV
Sbjct: 824 HAISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIV 871
>gi|242074052|ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
gi|241938145|gb|EES11290.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
Length = 1203
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 310/894 (34%), Positives = 479/894 (53%), Gaps = 132/894 (14%)
Query: 567 ISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSD 626
++G L + GSSWL++ LF + K+Y K LDFL +AQEVLCE+L++RG++VSLSD
Sbjct: 420 LNGEVLTCSLGSSWLQNNTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSD 479
Query: 627 LYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS-HMNFLMSAKDSESTRSLQGEHL 685
++ S SR+ L + + L EA++ +Q+++D ++ L ++E Q + +
Sbjct: 480 MF--SDHYSRRKLTEGVKLALDEAEEAFRIKQILLDPINIPVLKCQDETEDVTYRQSDCI 537
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
Q + ++ ++S+ AFK VF D+ + ++ S DNS++ M AGSKG++LK Q + C
Sbjct: 538 ----QNNPSVIRSSIMAFKDVFSDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTAC 593
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRA------GDNTECAKSYIPSAVVENSFLTGLNP 799
+GLQ + FR P +LSC WNR ++ G N + AV+ NSF+ GLNP
Sbjct: 594 VGLQLPASKFPFRVPSQLSCIRWNRQKSLNYEAEGTNERVGGQNL-YAVIRNSFIEGLNP 652
Query: 800 LECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE 859
LEC +H+++ R + FS+NAD+PGTLTR+LM+ +RD+ AYDGTVR++YG QIVQFSY+
Sbjct: 653 LECLLHAISGRANFFSENADVPGTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYD-- 710
Query: 860 GTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQ 919
+ D P V +C ++ D
Sbjct: 711 ----------------------------SADDP-------------EVFKCHKATNSGDH 729
Query: 920 TMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICH 979
LFLS L K R+G EY +LEVKNHLE
Sbjct: 730 IGLLFLSRHLKKYRYGLEYASLEVKNHLE------------------------------- 758
Query: 980 FHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAF 1039
+E+MK+ L +I+ L ++ A R +LK ++P + IS + C + + A
Sbjct: 759 ----QEMMKKKRLGLRFVIEELTKEYNATRDQLKNAIPSICISRRKCV-VGDEGVKISAC 813
Query: 1040 CVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSF 1099
C+ V+ + S L+TI+ V+P +L T++KGF E K V+I + HD
Sbjct: 814 CIAVVALAEPNSMS-QLDTIKKRVIPIILDTLLKGFLEFKDVEIQCQ--------HD--- 861
Query: 1100 GELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFL 1159
GEL ++V MS C W+ L N C +M++IDW S P N+ +YGID+ ++F+
Sbjct: 862 GELLVKVCMSHHCKGGRFWATLQNACIPVMELIDWELSRPSNVADIFCSYGIDSAWKYFV 921
Query: 1160 TNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSN 1219
+L+SA +D G+NI EHLL++A+++S TG+F +++ GL QR S+SSPF +A FS
Sbjct: 922 ESLKSATTDIGRNIRREHLLVIADSMSVTGQFHAISSHGLKQQRTRLSISSPFSEACFSR 981
Query: 1220 PGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLS 1279
P SFI AAK +VDNL GS+DA+ WGK P GT G F+I++SG+ + +Y+ L
Sbjct: 982 PAQSFIDAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHSGKPHEPEQDESIYDFLR 1041
Query: 1280 TP-----------VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLG---NLDFETISR 1325
+P + E +C+ C +K G G+ + DF
Sbjct: 1042 SPKVQNVEKNHLDTRRQSTENASICRL------ACKSK-GSATVNGVAITSDQDF----- 1089
Query: 1326 GVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPD 1385
+ K +++++ + +L+ +L +Y + + E DK+ +I AL FHPR EK+G+ +
Sbjct: 1090 -LHAKVSIWDNIIDMRASLQNMLREYPLNGYVMEPDKSKLIEALKFHPRGAEKIGVGVRE 1148
Query: 1386 IEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
I+V +P H +RCF L+R D + EDFSYHKCV GA I+P+ + + R
Sbjct: 1149 IKVGLNPNHPGTRCFILLRNDDTTEDFSYHKCVHGAANSISPQLGSYLKKLYHR 1202
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/452 (38%), Positives = 258/452 (57%), Gaps = 56/452 (12%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
E+P L I + T T+ EKLS M + VS+VT+P+LGLPN + +C +CG+K + C+
Sbjct: 6 ELPEATLNAIKFDLMTSTDMEKLSSMSVIEVSDVTSPKLGLPNASPQCETCGSKSGRDCD 65
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE-RQKGAGSSRKEQPRVCKYCVR 129
GHFG K T+ +PYF+ D+ LN ICP C + R+ K GS K P V +
Sbjct: 66 GHFGVTKLAATVHNPYFIDDVVHFLNQICPGCLSPREGINMKKDGS--KLYPSVIFKTLS 123
Query: 130 NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK------LPDDYWGFIPFDAQQE 183
+P + + S + + +I+ E E++S ++K LP DYW F+P + +Q
Sbjct: 124 SPRVLLSKSKLHRSPSVME-RISIVAEAAERVSNRSKGKGLLEGLPQDYWDFVPSENKQV 182
Query: 184 ENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFS 243
++++ + +LS QV ++LK DP + ++F+ ++ FL C PVTPN HRV E+ + S
Sbjct: 183 QSNM--TKIILSPYQVFHMLKKSDPELIKQFVSRRELLFLSCLPVTPNCHRVVEIGYGLS 240
Query: 244 HEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNID 303
+ F S+K E
Sbjct: 241 DGRVTFL-------------------------------------YSKKTDGETS------ 257
Query: 304 ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
++ SG++W+KD VL KR+D+ FR + GDP IKL EIGIP +A L +S+ +NS+N+E
Sbjct: 258 -TDPSGMKWLKDAVLSKRSDNAFRSTMVGDPKIKLWEIGIPEDLASNLVVSDHVNSYNFE 316
Query: 364 RLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
+++ + LL K EL++ R G L+ +R+ D LE+GDI YRPL DGD++LINRPPS+H H
Sbjct: 317 NINLKCNLHLLTKEELFIRRNGKLMFLRKADQLEIGDIAYRPLQDGDLILINRPPSVHQH 376
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDG 455
SLIA + K+LPI SVV+INPLCC+PF GDFDG
Sbjct: 377 SLIAFSAKILPIHSVVSINPLCCTPFLGDFDG 408
>gi|302781186|ref|XP_002972367.1| hypothetical protein SELMODRAFT_413061 [Selaginella moellendorffii]
gi|300159834|gb|EFJ26453.1| hypothetical protein SELMODRAFT_413061 [Selaginella moellendorffii]
Length = 1444
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 438/1486 (29%), Positives = 696/1486 (46%), Gaps = 195/1486 (13%)
Query: 7 EEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK-- 64
+ LE +G L + T E + SV E+ V + N R GLPN ++ C+SCGAK
Sbjct: 12 DRALEEATGTLIALDFRPLTSEEIIRASVYEVKTVRALQNNRFGLPNLSDCCTSCGAKRT 71
Query: 65 --DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK----------- 111
AC GH G I+ P + H +S + +LN +C C + + + +K
Sbjct: 72 DASNSACPGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFKHKGRKKELRTLSSLEQ 131
Query: 112 -----------------GAGSSRKEQ-PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAI 153
GA + E+ P C C PA ++ K+ + ++ A+
Sbjct: 132 VASGVDAHQADIGAVPNGARAPEAEEDPEKCAVC-SGPAAAVKKIFKKVGTANVP---AL 187
Query: 154 IVEIDEKLSKKNKKLPDDYWGFIPFD---AQQEENSVKPNR--KVLSCKQVSYLLKDVDP 208
++EID K+ +++ +P + I D Q + PN+ ++L C L ++
Sbjct: 188 LLEIDGKVRRED--IPPGFQSLILKDEMTPQWRSKMLDPNQVLRILKC-----LPRETTD 240
Query: 209 SIREEFILSKDAP--FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR 266
+R+E + S A F+K PV PN R + F + + +K +V R
Sbjct: 241 KLRDEKLPSIPAEDYFIKSLPVPPNWMRYSTNEFYFQDKTTKNLKHLLTKIKSIVYTRDE 300
Query: 267 D----------IELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNS-SGLRWIKD 315
D +E+ C++ + L+ + S + R D S SGL++++
Sbjct: 301 DKISLLTEQKVMEIQAAATQCIRANPLYGNVSDE----DPRYGNVSDESKPLSGLQFLRS 356
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE 375
+ GK R VV GDP +KL+EIGI ++A L + E + S N L S+
Sbjct: 357 LT-GKYCGSSARAVVIGDPALKLEEIGISARIAAGLVVLETVTSSNIISLQ---SYAYNN 412
Query: 376 KGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G L V R G + R L +GD+I+R L DGD V +NRPP+ H H+LI L KV+
Sbjct: 413 PG-LKVVRGGEVCTGRSCKKLRVGDVIHRSLKDGDQVFVNRPPTFHKHALIGLKSKVIR- 470
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
++V +NPL CSP DFDGD L Y+PQ++ R E+ ELVAL KQL++ Q G++++ L
Sbjct: 471 NNVFAVNPLICSPLFADFDGDTLALYLPQSLQVRAEVAELVALPKQLVSSQGGQSIIGLT 530
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS-VWSGKQLFSMLLP 553
QD+L AHL+ +V L L M QL+M+CP + P I K + S +W+GKQLF M LP
Sbjct: 531 QDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAKVPVPAIVKSPRKSPLWTGKQLFQMTLP 590
Query: 554 PDFEYTFPSKDVYISGGKLI--SAEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEV 610
F+ + I G+++ S + S+WL + L + +RY D+ L+ L AQ +
Sbjct: 591 TTFDSESDDGRLIIRQGEILRTSDKSSAWLG--KDGLMTTICRRYGPDRALEHLDTAQGI 648
Query: 611 LCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS--HMNFL 668
+W+S RG +V L D Y+A+ + SR+ L +E + EA+ + Q++ DS +N +
Sbjct: 649 AVDWISERGFSVGLCDFYMAADAVSRRKLEEETLCAVEEAKISSLAHQIVSDSRFQVNSV 708
Query: 669 MSAKDSESTRSLQGEHLSYEKQRSAALS--QASVDAFKHVFWDIQNLAYKYGSKDNSLLA 726
+ S +Q + E + AA+S Q+++ AF+ + + S++NSLL
Sbjct: 709 SRPRCSSWNERVQPVTSANEATQQAAISAFQSTMKAFERTIEE----HVRENSRENSLLR 764
Query: 727 MFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR-----FPHELSCAAWNRLRAGDNTECAK 781
M +A SKG+L K++Q CLGLQ + FP + + L ++E K
Sbjct: 765 MVEAKSKGSLSKMMQQGGCLGLQLRQGEFVYHRVKSLFPRAVENESRGYL---TSSELWK 821
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDG 841
S +VE+SFL GL+P E FIHS++SR + + + R LM +M+D+ YD
Sbjct: 822 SM---GLVESSFLDGLDPREFFIHSLSSRKGN-DGSQQRCASFFRFLMSYMKDIRVEYDN 877
Query: 842 TVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSP- 900
T+R+ +G I QFSY G + GE PVG L+ A+ E Y DQ ++ +SP
Sbjct: 878 TIRSTHGGHIFQFSY---GATAEPGE----PVGLLAGTAVIEPVY---DQ---VMSSSPQ 924
Query: 901 ----LLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIV 956
L L+N+L S K + D+ ++L KL K E+ AL+V++ L+ + + +
Sbjct: 925 ASTMLKTLQNILFSNSFK-DIDRCVTL----KLQKLPVQPEWIALQVQDFLKPVTIGMLA 979
Query: 957 STSMIIYSP--QTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKI 1014
S I YSP + G K PWI F +R E M+R L +I+ L +Q + +
Sbjct: 980 SKIWIEYSPCSEVGGQKKRVPWIGCFELRAEAMERCSLNIDTIVCHLRKQLPTS-----L 1034
Query: 1015 SVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKG 1074
PD I S +++ C F V N+ I I + LL+ VVKG
Sbjct: 1035 DDPDAFIQGLHFFSRDVEVLC---FFPITSSVSNYDSKQIHKHMIGT-MFRNLLQVVVKG 1090
Query: 1075 F-REIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMID 1133
R I+ V++ W+D EL + V+ + W+ + C I ++D
Sbjct: 1091 CPRGIEFVNVKWED-------------ELCIEVAFLSRTRGVP-WTHALEACGSISHLVD 1136
Query: 1134 WTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVG 1193
W +S P +I+ +A+GI+A Q+ L L+ +G L + +
Sbjct: 1137 WQKSTPLSIQEVHVAFGIEAAYQYLLEKLKEFTKGSG-------------VLRKPWKNID 1183
Query: 1194 LNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGT 1253
N G K+ S SP A +PG F AA VD L G+ + GK PS+GT
Sbjct: 1184 ANESGYEAFVKNLSGCSPLAFAMGKSPGGVFEAAAMNREVDYLAGANELAFCGKSPSLGT 1243
Query: 1254 GGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFK 1313
G + ++ + + +S+ D +L+ + + ++ D A
Sbjct: 1244 GANIELFFKEDKGPVSRFPDFESLVFS---------------RRVVDDTVSAT------- 1281
Query: 1314 GLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHP 1373
L D E + + ++S +D+LR K G +S ++ ++ L +HP
Sbjct: 1282 -LSAKDREIVWARIDQRSQKLHDILR----------KSLTGTPVSAANEAVILDTLKYHP 1330
Query: 1374 RRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVI 1419
+ K+G I V H RCF +VR DGS+EDFSYH+C++
Sbjct: 1331 MMDSKVGCGVRHIRVDNHHSF-GGRCFHIVRLDGSVEDFSYHRCLL 1375
>gi|302780129|ref|XP_002971839.1| hypothetical protein SELMODRAFT_441655 [Selaginella moellendorffii]
gi|300160138|gb|EFJ26756.1| hypothetical protein SELMODRAFT_441655 [Selaginella moellendorffii]
Length = 1438
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 438/1507 (29%), Positives = 699/1507 (46%), Gaps = 199/1507 (13%)
Query: 7 EEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK-- 64
+ LE +G L + T E + SV E+ V + N R GLPN ++ C+SCGAK
Sbjct: 12 DRALEEATGTLIALDFRPLTSEEIIRASVYEVKTVRALQNNRFGLPNLSDCCTSCGAKRT 71
Query: 65 --DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK----------- 111
AC GH G I+ P + H +S + +LN +C C + + + +K
Sbjct: 72 DASNSACPGHSGHIELPVLVYHWDRISALEAILNRVCLHCYSFKHKGRKKELRTLSSLEQ 131
Query: 112 -----------------GAGSSRKEQ-PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAI 153
GA + E+ P C PA ++ K+ + ++ A+
Sbjct: 132 VASGVDAHQADIGAVPNGARAPEAEENPGKCT----GPAAAVKKIFKKVGTANVP---AL 184
Query: 154 IVEIDEKLSKKNKKLPDDYWGFIPFD---AQQEENSVKPNR--KVLSCKQVSYLLKDVDP 208
++EID K+ +++ +P + I D Q + PN+ ++L C L ++
Sbjct: 185 LLEIDGKVRRED--IPPGFQSLILKDEMTPQWRSKMLDPNQVLRILKC-----LPQETID 237
Query: 209 SIREEFILSKDAP--FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR 266
+R+E + S A F+K PV PN R + F + + +K +V R
Sbjct: 238 KLRDEKLPSIPAEDYFIKSLPVPPNWMRYSTNEFYFQDKTTKNLKHLLTKIKSIVYTRDE 297
Query: 267 D----------IELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNS-SGLRWIKD 315
D +E+ C++ + L+ + S + R D S SGL +++
Sbjct: 298 DKISLLTEQKVMEIQAAATQCIRANPLYGNVSDE----DPRYGNVSDESKPLSGLHFLRS 353
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE 375
+ GK R VV GDP +KL+EIGI ++A L + E + S N L S+
Sbjct: 354 LT-GKYCGSSARAVVIGDPALKLEEIGISARIAAGLVVLETVTSSNIIFLQ---SYAYNN 409
Query: 376 KGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G L V R G + R L++GD+I+R L DGD V +NRPP+ H H+LI L KV+
Sbjct: 410 PG-LKVVRGGEVCTARSCKKLQVGDVIHRSLKDGDQVFVNRPPTFHKHALIGLKSKVIR- 467
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
++V +NPL C P DFDGD L Y+PQ++ R E+ ELVAL KQL++ Q G++++ L
Sbjct: 468 NNVFAVNPLICPPLFADFDGDTLALYLPQSLQVRAEVAELVALPKQLVSSQGGQSIIGLT 527
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDS-VWSGKQLFSMLLP 553
QD+L AHL+ +V L L M QL+M+CP + P I K + S +W+G+QLF M LP
Sbjct: 528 QDALLGAHLMTRKNVFLDKLDMDQLRMWCPSAEVPVPAIVKSPRKSPLWTGQQLFQMTLP 587
Query: 554 PDFEYTFPSKDVYISGGKLI--SAEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEV 610
F++ + I G+++ S + S+WL + L + +RY D+ L+ L AQ +
Sbjct: 588 TTFDWESDDGGLIIRQGEILRTSDKSSAWLG--KDGLMTTICRRYGPDRALEHLDIAQGI 645
Query: 611 LCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS--HMNFL 668
+W+S RG +V L D Y+A+ + SR+ L +E + EA+ + Q++ D +N +
Sbjct: 646 AVDWISERGFSVGLCDFYMAADAVSRRKLEEETLCAVEEAKISSLAHQIVSDPRFQVNSV 705
Query: 669 MSAKDSESTRSLQGEHLSYEKQRSAALS--QASVDAFKHVFWDIQNLAYKYGSKDNSLLA 726
+ + +Q E + AA+S Q+++ AF+ + + S++NSLL
Sbjct: 706 SRPRCNSWNERVQPVTSVNEATQQAAISAFQSTMKAFERTIEE----HVRENSRENSLLR 761
Query: 727 MFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR-----FPHELSCAAWNRLRAGDNTECAK 781
M +A SKG+ K++Q CLGLQ + FP + + L + +E K
Sbjct: 762 MVEANSKGSFSKMMQQGGCLGLQLRQGEFVYHRVKSLFPRAVENESRGYLTS---SELWK 818
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDG 841
S +VE+SFL GL+P E FIHS++SR + + + R LM +M+D+ YD
Sbjct: 819 SM---GLVESSFLDGLDPREFFIHSLSSRKGN-DGSQQRCASFFRFLMSYMKDIRVEYDN 874
Query: 842 TVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY----SALDQPISLLE 897
T+R+ +G I QFSY G + GE PVG L+ A+ E Y S+ Q ++L+
Sbjct: 875 TIRSTHGGHIFQFSY---GATAEPGE----PVGLLAGTAVIEPVYDQVMSSSPQASTMLK 927
Query: 898 TSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVS 957
T L+N+L S K + D+ ++L KL K E+ AL+V++ L+ + + + S
Sbjct: 928 T-----LQNILFSNSFK-DIDRCVTL----KLQKLPVQPEWIALQVQDFLKPVTIGMLAS 977
Query: 958 TSMIIYSP--QTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKIS 1015
I YSP + G K PWI F +R E M+R L +I+ L + + +
Sbjct: 978 KIWIEYSPCSEVGGQKKRVPWIGCFQLRAEAMERCSLNIDTIVCHLRKLLPTS-----LD 1032
Query: 1016 VPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGF 1075
PD I S +++ C F V N+ I I + LL+ VVKG
Sbjct: 1033 DPDAFIQGLHFFSRDVEVLC---FFPITSSVSNYDSKQIHKHMIGT-MFGNLLQVVVKGC 1088
Query: 1076 -REIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDW 1134
R I+ V++ W+D EL + V+ + W+ + C I ++DW
Sbjct: 1089 PRGIEFVNVKWED-------------ELCIEVAFLSRTRGVP-WTHALEACGSISHLVDW 1134
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
+S P +I+ +A+GI+A Q+ L L+ +G L + +
Sbjct: 1135 QKSTPLSIQEVHVAFGIEAAYQYLLEKLKEFTKGSG-------------VLRKPWKNIDA 1181
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
N G K+ S SP A +PG F AA VD L G+ + GK PS+GTG
Sbjct: 1182 NESGYEAFVKNLSGCSPLAFAMGKSPGGVFEAAAMNREVDYLAGANELAFCGKSPSLGTG 1241
Query: 1255 GHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKG 1314
+ ++ + + +S+ D +L+ + + ++ D A
Sbjct: 1242 ANIELFFKEDKGPVSRFPDFESLVFS---------------RRVVDDTVSAT-------- 1278
Query: 1315 LGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPR 1374
L D E + + ++S +D+LR K G +S ++ ++ L +HP
Sbjct: 1279 LSAKDREIVWARIDQRSQKLHDILR----------KSLTGTPVSAANEAVILDTLKYHPM 1328
Query: 1375 RNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYR 1434
+ K+G I V H RCF +VR DGS+EDFSYHKC+ LE I + R
Sbjct: 1329 MDSKVGCGVRHIRVDNHHSF-GGRCFHIVRLDGSVEDFSYHKCL---LERIKGNTVLVQR 1384
Query: 1435 AKWKRLG 1441
K K +G
Sbjct: 1385 YKKKFMG 1391
>gi|168027477|ref|XP_001766256.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
gi|162682470|gb|EDQ68888.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
Length = 2458
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 322/1196 (26%), Positives = 549/1196 (45%), Gaps = 166/1196 (13%)
Query: 154 IVEIDEKLSKKNKK--LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDV-DPSI 210
I+ ++ + S K +K LP D+W FI A EN P VLS + +LK + D +I
Sbjct: 522 IILLEVQGSDKGEKFLLPHDFWSFIK-GAAYPENEEVPKSHVLSPLEALSILKKISDTAI 580
Query: 211 RE----EFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLF-FDNWTRHLKKMVDYRG 265
+ + + +KC P+ PN R T+ + + F D TR L+ +V+ G
Sbjct: 581 GKLGMNGLVARPEGLIMKCVPIPPNCTRTTDYKYVSNTTAVRFGTDRVTRTLQNLVNEIG 640
Query: 266 RDIE------LSHLVQDCLKISKLHLDKSSRKDSA--------EVRQKKNIDISNSSGLR 311
R + +D +K+ ++ + R+ A +++ +N + R
Sbjct: 641 RIQRTRTGKIMKRGQRDEVKVLQVLTAEYLREKGAPKAVPGKEPLKKDRNGRFTKQDDHR 700
Query: 312 WIKDVV----LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV 367
W KD + LGK + R VV GDP++ ++ IG+P ++A++L + ER WN +L
Sbjct: 701 WTKDWISQNYLGKGGNYTARAVVAGDPSLAIETIGVPLEIAQKLTVPERATKWNRSKLQE 760
Query: 368 CIS-FRLLEKGELYVCRKGGLVRIRRID-----------ALELGDIIYRPLTDGDIVLIN 415
+ ++L++G K G RI R + +++GD+I+R + DGD V +N
Sbjct: 761 YVDRTQMLQQGS----GKPGATRIVRNEEAFQVWANSTHTVQIGDVIHRNIQDGDFVYVN 816
Query: 416 RPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
RPPS+H HSL+AL V+V V+TINPL C PF+ DFDGD H +IPQ++ A EL L
Sbjct: 817 RPPSVHKHSLMALKVQVH-YGLVLTINPLVCPPFNADFDGDIFHVFIPQSLQAIAELEHL 875
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK 535
+A+ +Q+I+ G+ LL L QD+L AA+LL +L+ M QL ++ + I K
Sbjct: 876 MAVPQQIISDHGGQPLLGLTQDTLLAAYLLTSSKLLVDKAGMDQLCLWALKQPPDAAIVK 935
Query: 536 ISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLR-DYEGNLFQYL 592
K W+G+Q+F + LP D + P ++V+I GG++I + G+ LR D EG
Sbjct: 936 SPKGGPFWTGEQIFGLTLPTDLQVGAPHEEVFIEGGEVIRWSNGAKSLRKDSEGIAAALC 995
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF--YGLREA 650
++ ++++L A +L WL + G + L+D + S+S R+ ++ IF Y +
Sbjct: 996 VQLGPVALVNYLNTATGLLHAWLQMHGFSTGLADFQVTSNSADRQKMLKSIFEDYYQKSI 1055
Query: 651 QDTCNFQQLM---VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
Q++C+ +++ V + ++S+ D TR++ L QA+ F++
Sbjct: 1056 QESCDSVRILDAKVQAMGQEVISSPD-HLTRNIN------------FLEQAAQQTFRNRE 1102
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+++++ KY ++DN LL M ++GSKG+ KL+Q +GLQ ++ H L +
Sbjct: 1103 SEVESIVMKYAARDNGLLMMVRSGSKGSRGKLLQQIAGMGLQ------LYKGQHLLPFSG 1156
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLT 825
R +++E + +V +S + GLNP E F H + R + ++ PGTL
Sbjct: 1157 SRRSSMSNSSEL-DWWEDKGLVRSSLVDGLNPSELFNHVIADRTVILRKHVEVVQPGTLF 1215
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN---------------------IEGTSTP 864
+ LM F+RDL YDG+VRN G IVQF Y + +TP
Sbjct: 1216 KSLMLFLRDLHVMYDGSVRNQCGKNIVQFCYGGAIGVLKRSIPKERLSRSQFEVVNPATP 1275
Query: 865 --TGEIGD-----------QPVGSLSACAISEAAYSAL-----------DQPISLLET-S 899
T E D +PVG L+A AIS+ AY + +P+ L++
Sbjct: 1276 IVTWEEDDLKRWPLSILAGEPVGVLAATAISQPAYELMLDAPCLNGPFKPRPLELVQPFK 1335
Query: 900 PLLNLKNVLE------CGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLS 953
LL N+ + S D+T + L N + E L V+ HL+ + L
Sbjct: 1336 ALLTFSNLAQETLYPRAKSVLKPIDRTAIIRLVNCPCTQPLCLERRVLAVQAHLKKISLK 1395
Query: 954 DIVSTSMI---------IYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQ 1004
I + + + P +++ SPW+ H + +MK+ + +++ L ++
Sbjct: 1396 AIAESCAVEFWNMENFEVAGPSGEALRMGSPWLGHIKLSLNLMKQLQVDVELMVERLRQR 1455
Query: 1005 CKAARTELKISVPDML---------ISNKDCSSIN------MQKECNDAFCVTVMIVENF 1049
K + ISN C + MQ + ND T ++
Sbjct: 1456 FSGIIKNPKKHPMGQIFFCVSYNCGISNGLCLHFSPKLPNKMQNQRNDEIYNTALLALLL 1515
Query: 1050 KRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKAS--------KSHDDSFGE 1101
K I+ ++ LL VKG I+ V I+ +D + + + ++
Sbjct: 1516 K--------IRGTIISGLLDCTVKGDERIESVIIVSEDPSRTTWHRGLTCNQELEEELVL 1567
Query: 1102 LYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTN 1161
+ + W+++ C +M M+DW RS P +I+ A G++A Q
Sbjct: 1568 EVVVSPTKSKSKRGDAWASVKQACLPLMHMVDWNRSMPYSIQEIRHALGVEASYQMISQR 1627
Query: 1162 LESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFF 1217
L + T + H+ +VA+ ++ +G+ G N G K + +S+PF +A F
Sbjct: 1628 LGLVLDKTAPHTRSVHVKLVADMMTFSGDANGFNFSGFQDMNKSTGISAPFTEASF 1683
Score = 67.0 bits (162), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEI---GAVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ P+ L G+ +G++T +E SV+E + + +PRLGLP C++CG +
Sbjct: 235 QAPTADLVGLQIGLATTSEILGHSVIESRSKDTLISLVDPRLGLPAEDERCATCGGTNYD 294
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK 111
C GHF +K I HP ++ + ++L IC C + ++ K
Sbjct: 295 ECTGHFAHVKLTQPIFHPNYIRCVQRVLQKICLACGVPKVKKMK 338
Score = 61.6 bits (148), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 1336 DVLRLSNALKKILH--KYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPE 1393
D+ L ++++IL + +G RLS++D V L +HP+ +EK G I+V
Sbjct: 2212 DIDDLVKSMRRILFNPRNELGGRLSDEDDELVQTVLAYHPKLSEKAGCGTAYIKVDRSAG 2271
Query: 1394 HQNSRCFSLVREDGSIEDFSYHKCV 1418
N+RCF LVR DGS DFS+HKC+
Sbjct: 2272 FVNNRCFWLVRTDGSEIDFSFHKCL 2296
>gi|449479984|ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 362 bits (929), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 359/1338 (26%), Positives = 588/1338 (43%), Gaps = 194/1338 (14%)
Query: 38 IGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNS 97
I S+++NP LGLP +C SCG + CEGHFG+I+ P I HP ++++ K+L+
Sbjct: 38 ITHASQLSNPFLGLPIEFGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSL 97
Query: 98 ICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEI 157
+C KC ++K + G R+ C + +Q R +K G + + +++
Sbjct: 98 LCLKCLKMKKTKNIGFAE------RLLSSCCEDASQVTIR-----EAKKADGASYLQLKV 146
Query: 158 DEKLSKKNKKLPDDYWGFIP-FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFI- 215
+ S L + +W F+ + + +N R +L C +V +LK + R++
Sbjct: 147 PSRTS-----LQERFWDFLERYGFRYGDNFT---RTLLPC-EVKEMLKKIPNETRKKLAG 197
Query: 216 ---LSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV----------- 261
+D L+ PV PN V E+ + + D LKK++
Sbjct: 198 RGYYPQDGYILQYLPVPPNCLSVPEISDGVT---VMSSDPAVSMLKKILKQVEIIKGSRS 254
Query: 262 ---DYRGRDIELSHL---VQDCLKISKLHLDKSSRKDSAEVRQKKNI-DISNSSGLRWIK 314
++ ++E + L V L++ K+SR A K + D S + L ++
Sbjct: 255 GAPNFESHEVEANDLQLAVDQYLQVRGTV--KASRGIDARFGVNKELNDPSTKAWLEKMR 312
Query: 315 DVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS------VC 368
+ + K + R V+TGD + EIG+P +VA+R+ ER++ N L +C
Sbjct: 313 TLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLC 372
Query: 369 ISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+++R + Y R+G + L+ G I++R + DGDIV INRPP+ H HSL AL
Sbjct: 373 LTYR--DGSSAYSLREGSMGHTY----LKPGQIVHRRIMDGDIVFINRPPTTHKHSLQAL 426
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V L VV INPL C P DFDGDC+H + PQ+I A+ E+ L +++KQL++ SG
Sbjct: 427 RV-YLHDDHVVKINPLICGPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSG 485
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSV-WSGKQL 547
L L DSL + ++ L QQL MF P + + S+ W+ Q+
Sbjct: 486 NLNLQLANDSLLSLKMMFR-KYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQI 544
Query: 548 FSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLR-DYEGNLFQYLI---------KRYR 597
+LP F+ D Y+ + S++L+ D++ + LI ++
Sbjct: 545 LQTVLPASFDC---HGDSYL-------IKNSNFLKFDFDRDAMPSLINEILTSIFFQKGP 594
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS---HSCSRKI-LMDEIFYGLREAQDT 653
++VL F + Q +L E + G +V L D + + + I ++ + Y LR
Sbjct: 595 EEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPMAFLQALQKNIQVLSPLLYQLRST--- 651
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
F +L+ N L S K N
Sbjct: 652 --FNELVELQLENHLRSVKVP-----------------------------------FTNF 674
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP--LSFRFPHELSCAAWNRL 771
K +SL +F + S+ + K+VQ LGLQ S S +++ NR
Sbjct: 675 ILKL----SSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLFHNRY 730
Query: 772 RAGDNTECAKSYIPSA---VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
+ K PSA +V+ F GL+P E +HS+++R+ + L PGTL +
Sbjct: 731 SSD------KIDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLTEPGTLFK 784
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST------PTGEIGDQPVGSLSACA 880
LM +RD+ YDGTVRN N I+Q Y ++ P GE PVG L+A A
Sbjct: 785 NLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKAGMMQPYSLFPPGE----PVGVLAATA 840
Query: 881 ISEAAYSALDQPISLLETSPLLN-----LKNVLEC--GSKKSNADQTMSLFLSNKLGKRR 933
+S AY A +L+++P N +K +L C K D+ + L+L+N R+
Sbjct: 841 MSTPAYKA------VLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRK 894
Query: 934 HGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLK 993
+ E A VK+HL+ + L D MI Y+ Q + H H+ + ++K +
Sbjct: 895 YCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQPTPSGLGPGLVGHVHLNRMLLKELNID 954
Query: 994 EHSIIDSLYRQCKAARTE-----------LKISVPDMLISNKDCSSINMQKECNDAFCVT 1042
++ R+C+ + L+ S+ + ++ ++ C + T
Sbjct: 955 MTEVL----RRCQETMSSFKKKKKKIAHALRFSISEHCAFHQWNGEESIDMPCLIFWHQT 1010
Query: 1043 VMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSF--- 1099
+ + +RT+ L I V P L +T++KG IK ++W S + S
Sbjct: 1011 RDV--HLERTAHILADI---VFPLLSETIIKGDPRIKSASVIWISPDSTSWQKNPSRWQD 1065
Query: 1100 GELYLRVSM--SGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQF 1157
GEL L V + S W +++ C ++ +ID RS P I+ GI
Sbjct: 1066 GELALDVCLEKSAVKQNGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQ 1125
Query: 1158 FLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFF 1217
+ L ++S K +L +HL+++AN+++ TG +G N+ G + ++ PF +A
Sbjct: 1126 MIQRLSKSVSMVSKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATL 1185
Query: 1218 SNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGE--GRTLSKPVDVY 1275
P F KAA+ D+L V + WGK +VGTG FDI++ + G VDVY
Sbjct: 1186 FTPRKCFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVY 1245
Query: 1276 NLLSTPVSSKQNEKLKVC 1293
N L S K E C
Sbjct: 1246 NFLHMVRSGKSEEPTSAC 1263
Score = 70.9 bits (172), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 1336 DVLRLSNALKKILHK--YSIGQRLSEKDKTTVIRALY-FHPRRNEKLGIEPPDIEVTYHP 1392
D+ + +++K++H+ Y+ G LS +D++ V+++++ FHP + K+G V+ H
Sbjct: 1814 DIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHS 1873
Query: 1393 EHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
Q SRCF +V DG EDFSY KC+ ++ P+ AE++ AK+ R
Sbjct: 1874 SFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFR 1920
>gi|38605943|emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group]
Length = 1664
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 214/581 (36%), Positives = 313/581 (53%), Gaps = 109/581 (18%)
Query: 7 EEGLEV--PSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E LEV P L I + T ++ EKLS I + +VTN +LGLPN +C++CG++
Sbjct: 35 EPSLEVNNPVAELNAIKFSLMTSSDMEKLSSATIIEMCDVTNAKLGLPNGAPQCATCGSR 94
Query: 65 DRKACEG----------HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK--ERQKG 112
+ C+G HFG IK T+ + YF+ ++ +LLN ICP C T+++ + +K
Sbjct: 95 SIRDCDGKKKLTGKLLGHFGVIKLAATVHNSYFIEEVVQLLNQICPGCLTLKQNGDTKKA 154
Query: 113 AGSSRKEQPRVCKYCVRNPAQWYPRMRFKL--------------SSKDLSGKTAIIVEID 158
G++ + CKYC ++ ++ YP + FK+ + + K +II E+
Sbjct: 155 DGTTIQG---TCKYCSKDGSKLYPSIIFKMLTSPRVTLSRSKLHRNTSVMDKMSIIAEVA 211
Query: 159 EKLSKKNKK------LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIRE 212
++ K+K LP D+W FIP D Q +V +K+LS QV ++LK +DP +
Sbjct: 212 GGVAHKSKNKAPHETLPQDFWDFIPDDNQPPIFNV--TKKILSPYQVFHMLKKLDPELIN 269
Query: 213 EFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSH 272
+ D+ T+ K+MVD
Sbjct: 270 Q-------------------------------------DDRTKAYKRMVD---------- 282
Query: 273 LVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
L+ KS + SA +++ G +W+KD++L KR+D+ FR ++ G
Sbjct: 283 ----------LYSKKSDDESSAS---------TDTYGTKWLKDIILSKRSDNAFRSIMVG 323
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRR 392
DP I L EIGIP +A L +SE+++S+N+E +++ + LL K L V R G L+ +R+
Sbjct: 324 DPKINLNEIGIPMGLALNLVVSEQVSSYNFETINLKCNLHLLTKEVLLVRRNGNLIFVRK 383
Query: 393 IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
+ LE+GDI YR L DGD+VL+N PPS+H HSLIAL+ K+L S V+INPLCC PF GD
Sbjct: 384 ANQLEIGDIAYRLLQDGDLVLVNSPPSVHQHSLIALSAKLLSTQSAVSINPLCCDPFKGD 443
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGDCLHGYIPQ + +R+EL ELV L QL+NQQ GR+L+SL DSL AAH L V L
Sbjct: 444 FDGDCLHGYIPQCLQSRIELEELVGLSGQLLNQQDGRSLVSLTHDSLAAAHQLTNADVFL 503
Query: 513 SHLQMQQLQMFCPHRFLS--PDIFKI--SKDSVWSGKQLFS 549
+ QQLQM L+ P +FK S+ +W+ LFS
Sbjct: 504 EKAEFQQLQMLSSSISLTPMPSVFKSTNSQGPLWTDLYLFS 544
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 193/516 (37%), Positives = 287/516 (55%), Gaps = 59/516 (11%)
Query: 625 SDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684
+DLYL S SR+ L +E+ L EA++ +Q++++S + D RS E
Sbjct: 538 TDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNSVSIPNLKYYDGGDDRSNTDEQ 597
Query: 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
+ Q S + ++S+ +FK VF D+ + +Y SKDNS++ M +GSKG++LK VQ +
Sbjct: 598 SGF-TQVSLPIIRSSMTSFKSVFNDLLKMVQQYVSKDNSMMTMINSGSKGSVLKFVQQTA 656
Query: 745 CLGLQHSLAPLSFRFPHELSCAAWNRLRAGD------NTECAKSYIPSAVVENSFLTGLN 798
C+GLQ + FR P +LSC +WNR ++ + +EC AVV NSFL GLN
Sbjct: 657 CVGLQLPASKFPFRIPSQLSCVSWNRHKSRNCEITDGTSECVGGQDMYAVVRNSFLDGLN 716
Query: 799 PLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI 858
PLEC +H+++ R + FS+NAD+PGTLTR+LM+ +RD AYDGTVR++YG QIV+FSY+
Sbjct: 717 PLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYGQQIVRFSYDT 776
Query: 859 -EGTSTP---TGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKK 914
+G + GE G PVGS +AC+ISEAAY ALD P++ LE SPL+NL+ VL+C
Sbjct: 777 ADGMYSDHDLEGEPG-APVGSWAACSISEAAYGALDHPVNSLEDSPLMNLQEVLKCHKGT 835
Query: 915 SNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFS 974
++ D T LFLS L K R+GFEY +LEVK+HLE + SD+V T
Sbjct: 836 NSLDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDFSDMVDT---------------- 879
Query: 975 PWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQ-- 1032
E MK L+ I+ + Q R +L ++P + ISN + + M+
Sbjct: 880 ----------ETMKIKRLRLEFIVREIIDQYNTLRKQLNNAIPSVSISNSETLHLKMENK 929
Query: 1033 -----------KEC--NDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIK 1079
EC N CVT M+V+ + L+ I+ V+P +L T++KGF E K
Sbjct: 930 SGKLGKNLGTGNECVKNQTCCVT-MVVQVEINSMSQLDVIKERVIPSILATLLKGFLEFK 988
Query: 1080 KVDILWKDKQK-----ASKSHDDSFGELYLRVSMSG 1110
V + ++ + K H+ + + Y +++G
Sbjct: 989 NVKVQCQEDNELVLKVVCKIHNRCYWKEYPSTALTG 1024
Score = 119 bits (297), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 115/201 (57%), Gaps = 7/201 (3%)
Query: 1220 PGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLS 1279
P SFI AAK +VDNL G++DA+ WGK P G+ G F I+YSG+ + +Y+ L
Sbjct: 1051 PAHSFINAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLH 1110
Query: 1280 TP-VSSKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETIS---RGVLRKSWTYN 1335
P V + + + + + ++K + +G ++ IS + + K +
Sbjct: 1111 NPEVQALEKNVMDTYRKR---TEKTSKRRSALNSEGNATINGGAISFNQKFLNAKVGIWE 1167
Query: 1336 DVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQ 1395
+++ + +L+ +L +Y++ + ++E+DK+ ++ AL FHPR +K+G+ +I++ +P H
Sbjct: 1168 NIIDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHP 1227
Query: 1396 NSRCFSLVREDGSIEDFSYHK 1416
+SRCF ++R D + DFSY+K
Sbjct: 1228 SSRCFIVLRNDDTTADFSYNK 1248
>gi|357155574|ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Brachypodium
distachyon]
Length = 1935
Score = 352 bits (904), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 358/1334 (26%), Positives = 564/1334 (42%), Gaps = 203/1334 (15%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
V G + I L +ST+ E S+ + + S++ NP LGLP T +C SCGA + C
Sbjct: 10 VAEGAIKSIKLSLSTEDEILTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGASENGKC 69
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSR--KEQPRVCKYC 127
EGHFG+I+ P I HP +S++ +LL+ +C KC I+K + A S + K +
Sbjct: 70 EGHFGYIELPVPIYHPCHVSELRQLLSLVCLKCLRIKKGKDVPALSLKEVKTADGAFRLE 129
Query: 128 VRNPAQWYPRMRFKLSSKDL--------SGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFD 179
+R P PR K SS + G + + E+ KK+PDD
Sbjct: 130 LRAP----PRRLMKDSSWNFLDKYGFHHGGASHFRTLLPEEALNILKKIPDD-------- 177
Query: 180 AQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVP 239
RK L+ + +++ +K PV PN +P
Sbjct: 178 ----------TRKKLAARGY----------------IAQSGYVMKYLPVPPN---CLYIP 208
Query: 240 HAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS---------HLVQDC-LKIS---KLHLD 286
+ + +D LKK++ +R I+ S H + L+IS +HL
Sbjct: 209 EFTDGQSIMSYDISISLLKKIL-HRIEQIKKSRAGTPNFESHEAESSDLQISIAQYIHLR 267
Query: 287 KSSRKDSAEVRQKKNIDISNSSGLRWI---KDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
+++ R + D S+ S +W+ + + + K + R V+TGDP I + +G+
Sbjct: 268 GTTKGPQDTKRFTISTDSSHLSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVVGL 327
Query: 344 PCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGL-----VRIRRIDALEL 398
P +VA+R+ E++ N +RL +++KG R G V + L++
Sbjct: 328 PSEVAKRITFEEQVTDINIKRLQ-----EVVDKGLCLTYRDGQTTYAITVGSKGYTTLKV 382
Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCL 458
G I R + DGD+V +NRPPS H HSL A V + V INPL CSP DFDGDC+
Sbjct: 383 GQTISRRIVDGDVVFLNRPPSTHKHSLQAFYVYIHD-DHTVKINPLICSPLAADFDGDCV 441
Query: 459 HGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQ 518
H Y PQ++ A+ E EL +++KQL N +G+ L L DSL A M +LS
Sbjct: 442 HIYYPQSLAAKAEALELFSVEKQLTNSHNGKVNLQLSNDSLLALKH-MSSRTVLSKESAN 500
Query: 519 QLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYT---FPSKDVYISGGKLISA 575
QL M P + K+ W+ Q+ LP F KD + L
Sbjct: 501 QLAMLLSFSLPDPAVVKLKP--CWTITQIIQGALPAALTCEGGRFLVKDSTVIKLDLAKE 558
Query: 576 EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCS 635
+ D ++ L + L FL A Q +L E+L + G +VSL D +
Sbjct: 559 SVQASFSDLVSSI---LCVKGPGGALQFLNALQPLLMEYLLLDGFSVSLQDFNVP----- 610
Query: 636 RKILMDEIFYGLREA-----QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ 690
K+L++E+ ++E Q C+ Q + N L K S ++ HL
Sbjct: 611 -KVLLEEVHKSIQEQSLVLEQSRCSKSQFVEMRVDNNLKDVKQQISDFVVESSHLGLLID 669
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQ--------- 741
+ S + V +Q L + L +++ G K +LV+
Sbjct: 670 PKSEPSMSKV---------VQQLGFVG-------LQLYREG-KFYSSRLVEDCFSSFVDK 712
Query: 742 HSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLE 801
H +G QH P ++ +V+NS+ GLNP E
Sbjct: 713 HPPIVGNQH--PPEAY-----------------------------GLVQNSYFHGLNPYE 741
Query: 802 CFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN-I 858
+HS+++R++ + L PGTL + LM +RD+ YDGTVRN N I+Q YN
Sbjct: 742 ELVHSISTREAIVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNICSNSIMQLKYNED 801
Query: 859 EGTSTPTGEIGDQPVGSLSACAISEAAYSA-LDQPISLLETSPLLNLKNVLEC--GSKKS 915
+ T P+ +PVG L+A AIS AY A LD S + ++K +L+ K
Sbjct: 802 DATDIPSALTPGEPVGVLAATAISNPAYKAVLD--ASQSNNTSWASMKEILQTKVSYKND 859
Query: 916 NADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQT--GSMKHF 973
D+ + LFL++ ++ E A+ V+N L+ + L D + I Y Q GS +
Sbjct: 860 TNDRKVILFLNDCSCPKKFCKEKAAIAVQNRLKRVTLEDCATDICIEYHKQILDGSSEAT 919
Query: 974 SPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAA-------RTELKISVPDMLISNKDC 1026
+ H H+ K + + I+ ++C+ + L + S DC
Sbjct: 920 PALVGHIHLEKARLDMINVSTEDIL----QKCQEVSLKHGKKKGHLGHLFKKITFSTCDC 975
Query: 1027 SSINMQKECNDAF-----CVTVMIVENFKRTSIDLE----TIQMWVMPFLLKTVVKGFRE 1077
S QK D C+ E+ S +E + + LL T++KG
Sbjct: 976 SFT--QKPMIDGKLPKVPCLQFSFSEDIPMLSESVERAVSVLANSLCDVLLDTIIKGDPR 1033
Query: 1078 IKKVDILW---------KDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQI 1128
I++ I+W K+ +K SK + + V + W M+ C +
Sbjct: 1034 IQEAKIMWVGSDAQSWVKNTRKVSKGEP----TVEIVVEKNEASKQGDAWRIAMDACIPV 1089
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D+ID RS P I+ GI + L + + K IL +HL++VAN+++ T
Sbjct: 1090 IDLIDTRRSIPYGIQQVRELLGISCSFDQIVQRLSTTMKTVAKGILKDHLILVANSMTCT 1149
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G G N G + V PF ++ P F KAA+ D L V + WGK
Sbjct: 1150 GNLYGFNTGGYRATFRALKVQVPFTESTLFTPMKCFEKAAEKCHSDALGCVVSSCSWGKH 1209
Query: 1249 PSVGTGGHFDIIYS 1262
++GTG F I+++
Sbjct: 1210 AALGTGSSFQILWN 1223
Score = 47.4 bits (111), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 1344 LKKILHKYSIGQRLSEKDKTTVIRA-LYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSL 1402
++KI + G RL +D+ + + L HP + K+ E I V H Q SRCF +
Sbjct: 1746 VRKIFRESCDGVRLPLEDEKFIKESILEHHPEKERKVPGEIDHIMVNKHHIFQESRCFYV 1805
Query: 1403 VREDGSIEDFSYHKCV 1418
V DG+ DFSY+KC+
Sbjct: 1806 VLADGTHTDFSYNKCM 1821
>gi|79571777|ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName: Full=DNA-directed RNA polymerase E subunit 1; Short=Nuclear
RNA polymerase E 1; AltName: Full=DNA-directed RNA
polymerase D subunit 1b; Short=AtNRPD1b; Short=Nuclear
RNA polymerase D 1b; AltName: Full=Protein DEFECTIVE IN
MERISTEM SILENCING 5; AltName: Full=Protein DEFECTIVE IN
RNA-DIRECTED DNA METHYLATION 3; AltName: Full=Protein
RNA-DIRECTED DNA METHYLATION DEFECTIVE 1; AltName:
Full=RNA polymerase IV subunit 1; Short=POL IV 1
gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase alpha subunit [Arabidopsis thaliana]
gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase large subunit [Arabidopsis thaliana]
gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B [Arabidopsis thaliana]
Length = 1976
Score = 345 bits (886), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 353/1356 (26%), Positives = 602/1356 (44%), Gaps = 181/1356 (13%)
Query: 7 EEGLEVPSGILTGISLGISTDTEK--EKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E E+ G + GI+ +++ E + +S I S++TN LGLP +C SCGA
Sbjct: 4 ESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCGAT 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP ++++ ++L+ +C KC I+K + G+S R+
Sbjct: 64 EPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAK----GTSGGLADRLL 119
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQE 183
C +Q +S KD + A +E+ KL +++ P W F+ + +
Sbjct: 120 GVCCEEASQ--------ISIKDRASDGASYLEL--KLPSRSRLQPG-CWNFLERYGYRYG 168
Query: 184 ENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP----FLKCFPVTPNNHRVTEVP 239
+ +P L ++V +L+ + R++ P L+ PV PN V E
Sbjct: 169 SDYTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEAS 224
Query: 240 HAFS----HEKKLFFDNWTRHLKKMVDYRGRDIEL-SHLVQ--DCLKISKLHLDKSSRKD 292
FS ++ + + + + R + SH + + ++ +L
Sbjct: 225 DGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAK 284
Query: 293 SAEVRQKKNIDI--------SNSSGLRW---IKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
+A +NID+ +SS W ++ + + K + R V+TGD + E+
Sbjct: 285 AA-----RNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEV 339
Query: 342 GIPCQVAERLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDA 395
GIP ++A+R+ ER++ N L +C+S+ + Y R G
Sbjct: 340 GIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSY--TQGSTTYSLRDGSKGHTE---- 393
Query: 396 LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDG 455
L+ G +++R + DGD+V INRPP+ H HSL AL V V + V INPL CSP DFDG
Sbjct: 394 LKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDG 452
Query: 456 DCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHL 515
DC+H + PQ++ A+ E+ EL +++KQL++ +G+ +L +G DSL + +++E V L
Sbjct: 453 DCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKA 511
Query: 516 QMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS 574
QQL M+ P + K SK W+ Q+ + P + + G + +
Sbjct: 512 TAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFP---------ERLSCKGDRFL- 561
Query: 575 AEGSSWLR-----DYEGNLFQYLI-----KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSL 624
+GS L+ D G++ ++ ++ + L F + Q +L E L G ++SL
Sbjct: 562 VDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSL 621
Query: 625 SDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684
DL ++ + MD I N ++ E + +
Sbjct: 622 EDLSMS------RADMDVIH---------------------NLII----REISPMVSRLR 650
Query: 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
LSY R + S+ K V A + K S+ + S + KLVQ +
Sbjct: 651 LSY---RDELQLENSIHKVKEV-------AANFMLKSYSIRNLIDIKSNSAITKLVQQTG 700
Query: 745 CLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
LGLQ S + A + + + G + +V+ F GL+P E
Sbjct: 701 FLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGD----FGIVKGCFFHGLDPYEEMA 756
Query: 805 HSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
HS+ +R+ + L PGTL + LM +RD+ DGTVRN N ++QF Y ++
Sbjct: 757 HSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSER 816
Query: 863 TPTG--EIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLN-----LKNVLECGSKKS 915
G E G +PVG L+A A+S AY A +L++SP N +K VL C
Sbjct: 817 GHQGLFEAG-EPVGVLAATAMSNPAYKA------VLDSSPNSNSSWELMKEVLLCKVNFQ 869
Query: 916 NA--DQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHF 973
N D+ + L+L+ +R E A V+N L + L D ++ Y Q + F
Sbjct: 870 NTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIF 929
Query: 974 SPWIC---HFHVRKEIMKRTGL-------KEHSIIDSLYRQCKAARTE----LKISVPDM 1019
C H H+ K +++ + K +I+SL ++ K T+ +SV +
Sbjct: 930 GIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSEC 989
Query: 1020 LISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLE-TIQMW---VMPFLLKTVVKGF 1075
C S + +D C+T ++ T DLE T+ + V P LL+ V+KG
Sbjct: 990 CSFRDPCGS-----KGSDMPCLTF----SYNATDPDLERTLDVLCNTVYPVLLEIVIKGD 1040
Query: 1076 REIKKVDILWKDKQKAS---KSHDDSFGELYLRVSM--SGQCHITSLWSALMNDCHQIMD 1130
I +I+W + H GE L V++ S W +++ C ++
Sbjct: 1041 SRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLH 1100
Query: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190
+ID RS P +++ G+ + + L +++ K +L EH++++AN ++ +G
Sbjct: 1101 LIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGT 1160
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250
+G N+ G + ++ +PF +A P F KAA+ D+L V + WGK
Sbjct: 1161 MLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVD 1220
Query: 1251 VGTGGHFDIIYSGEGRTLS--KPVDVYNLLSTPVSS 1284
VGTG F+++++ + L + DVY+ L +S+
Sbjct: 1221 VGTGSQFELLWNQKETGLDDKEETDVYSFLQMVIST 1256
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1335 NDVLRLSNALKKILH--KYSIGQRLSEKDKTTVI-RALYFHPRRNEKLGIEPPDIEVTYH 1391
+DV + L+KI+H Y G +S+ DKT V+ + L FHP++ KLG I V H
Sbjct: 1741 SDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKH 1800
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437
+SRCF +V DG+ +DFSY K + L P++AE + K+
Sbjct: 1801 TIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846
>gi|68300849|gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
Length = 1976
Score = 343 bits (879), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 353/1356 (26%), Positives = 601/1356 (44%), Gaps = 181/1356 (13%)
Query: 7 EEGLEVPSGILTGISLGISTDTEK--EKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E E+ G + GI+ +++ E + +S I S++TN LGLP +C SCGA
Sbjct: 4 ESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCGAT 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP ++++ ++L+ +C KC I+K + G+S R+
Sbjct: 64 EPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAK----GTSGGLADRLL 119
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQE 183
C +Q +S KD + A +E+ KL +++ P W F+ + +
Sbjct: 120 GVCCEEASQ--------ISIKDRASDGASYLEL--KLPSRSRLQPG-CWNFLERYGYRYG 168
Query: 184 ENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP----FLKCFPVTPNNHRVTEVP 239
+ +P L ++V +L+ + R++ P L+ PV PN V E
Sbjct: 169 SDYTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEAS 224
Query: 240 HAFS----HEKKLFFDNWTRHLKKMVDYRGRDIEL-SHLVQ--DCLKISKLHLDKSSRKD 292
FS ++ + + + + R + SH + + ++ +L
Sbjct: 225 DGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAK 284
Query: 293 SAEVRQKKNIDI--------SNSSGLRW---IKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
+A +NID+ +SS W ++ + + K + R V+TGD + E+
Sbjct: 285 AA-----RNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEV 339
Query: 342 GIPCQVAERLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDA 395
GIP ++A+R+ ER++ N L +C+S+ + Y R G
Sbjct: 340 GIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSY--TQGSTTYSLRDGSKGHTE---- 393
Query: 396 LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDG 455
L+ G +++R + DGD+V INRPP+ H HSL AL V V + V INPL CSP DFDG
Sbjct: 394 LKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDG 452
Query: 456 DCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHL 515
DC+H + PQ++ A+ E+ EL +++KQL++ +G+ +L +G DSL + +++E V L
Sbjct: 453 DCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKA 511
Query: 516 QMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS 574
QQL M+ P + K SK W+ Q+ + P + + G + +
Sbjct: 512 TAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFP---------ERLSCKGDRFL- 561
Query: 575 AEGSSWLR-----DYEGNLFQYLI-----KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSL 624
+GS L+ D G++ ++ ++ + L F + Q +L E L G ++SL
Sbjct: 562 VDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSL 621
Query: 625 SDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684
DL ++ + MD I N ++ E + +
Sbjct: 622 EDLSMS------RADMDVIH---------------------NLII----REISPMVSRLR 650
Query: 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
LSY R + S+ K V A + K S+ + S + KLVQ +
Sbjct: 651 LSY---RDELQLENSIHKVKEV-------AANFMLKSYSIRNLIDIKSNSAITKLVQQTG 700
Query: 745 CLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
LGLQ S + A + + + G + +V+ F GL+P E
Sbjct: 701 FLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGD----FGIVKGCFFHGLDPYEEMA 756
Query: 805 HSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
HS+ +R+ + L PGTL + LM +RD+ DGTVRN N +QF Y ++
Sbjct: 757 HSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSXIQFKYGVDSER 816
Query: 863 TPTG--EIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLN-----LKNVLECGSKKS 915
G E G +PVG L+A A+S AY A +L++SP N +K VL C
Sbjct: 817 GHQGLFEAG-EPVGVLAATAMSNPAYKA------VLDSSPNSNSSWELMKEVLLCKVNFQ 869
Query: 916 NA--DQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHF 973
N D+ + L+L+ +R E A V+N L + L D ++ Y Q + F
Sbjct: 870 NTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIF 929
Query: 974 SPWIC---HFHVRKEIMKRTGL-------KEHSIIDSLYRQCKAARTE----LKISVPDM 1019
C H H+ K +++ + K +I+SL ++ K T+ +SV +
Sbjct: 930 GIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSEC 989
Query: 1020 LISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLE-TIQMW---VMPFLLKTVVKGF 1075
C S + +D C+T ++ T DLE T+ + V P LL+ V+KG
Sbjct: 990 CSFRDPCGS-----KGSDMPCLTF----SYNATDPDLERTLDVLCNTVYPVLLEIVIKGD 1040
Query: 1076 REIKKVDILWKDKQKAS---KSHDDSFGELYLRVSM--SGQCHITSLWSALMNDCHQIMD 1130
I +I+W + H GE L V++ S W +++ C ++
Sbjct: 1041 SRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLH 1100
Query: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190
+ID RS P +++ G+ + + L +++ K +L EH++++AN ++ +G
Sbjct: 1101 LIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGT 1160
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250
+G N+ G + ++ +PF +A P F KAA+ D+L V + WGK
Sbjct: 1161 MLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVD 1220
Query: 1251 VGTGGHFDIIYSGEGRTLS--KPVDVYNLLSTPVSS 1284
VGTG F+++++ + L + DVY+ L +S+
Sbjct: 1221 VGTGSQFELLWNQKETGLDDKEETDVYSFLQMVIST 1256
Score = 62.8 bits (151), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1335 NDVLRLSNALKKILH--KYSIGQRLSEKDKTTVI-RALYFHPRRNEKLGIEPPDIEVTYH 1391
+DV + L+KI+H Y G +S+ DKT V+ + L FHP++ KLG I V H
Sbjct: 1741 SDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKH 1800
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437
+SRCF +V DG+ +DFSY K + L P++AE + K+
Sbjct: 1801 TIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846
>gi|297823913|ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata]
gi|297325678|gb|EFH56098.1| NRPD1b [Arabidopsis lyrata subsp. lyrata]
Length = 1947
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 344/1332 (25%), Positives = 586/1332 (43%), Gaps = 165/1332 (12%)
Query: 17 LTGISLGISTDTEK--EKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFG 74
+ GI ++T E +S I S++TN LGLP +C SCGA + CEGHFG
Sbjct: 14 IVGIKFALATHHEICIASISGSAINHPSQLTNSFLGLPLEFGKCESCGATEPDKCEGHFG 73
Query: 75 FIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQW 134
+I+ P I HP ++++ ++L+ +C KC I+K + G + R+ C +Q
Sbjct: 74 YIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAKSTSGGLAD----RLLGVCCEEASQ- 128
Query: 135 YPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQEENSVKPNRKV 193
+S +D + A +E+ KL +++ L W F+ + + + +P
Sbjct: 129 -------ISIRDRASDGASYLEL--KLPSRSR-LQAGCWNFLERYGYRYGSDYTRP---- 174
Query: 194 LSCKQVSYLLKDVDPSIREEFILSKDAP----FLKCFPVTPNNHRVTEVPHAFSH----E 245
L ++V +L+ + R++ P L+ PV PN V +V +S
Sbjct: 175 LLAREVKEILRRIPEETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPDVSDGYSSMSVDP 234
Query: 246 KKLFFDNWTRHLKKMVDYRGRDIEL-SHLVQ--DCLKISKLHLDKSSRKDSAEVRQKKNI 302
++ + + + + R + SH + D ++ +L +A +NI
Sbjct: 235 SRIELKDVLKKVIAIKSSRSGETNFESHKAEANDMFRVVDTYLQVRGTAKAA-----RNI 289
Query: 303 DI--------SNSSGLRW---IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
D+ +SS W ++ + + K + R V+TGD + E+GIP ++A+R+
Sbjct: 290 DMRYGVSKISDSSSSKAWTQKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRI 349
Query: 352 QISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRP 405
ER++ N L +C+S+ + Y R G + L+ G +++R
Sbjct: 350 TFEERVSVHNIGYLQKLVDDKLCLSY--TQGSTTYSLRDGS----KGHTVLKPGQVVHRR 403
Query: 406 LTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQA 465
+ DGD+V INRPP+ H HSL AL V V + V INPL CSP DFDGDC+H + PQ+
Sbjct: 404 VIDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLFYPQS 462
Query: 466 IGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP 525
+ A+ E+ EL +++KQL++ +G+ +L +G DSL + +++E V L QQL M+
Sbjct: 463 LSAKAEVMELFSVEKQLLSSHTGQLILQMGCDSLLSLRVMLE-GVFLDKATAQQLAMYGS 521
Query: 526 HRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLR-D 583
P + K SK W+ Q+ + P G +GS L+ D
Sbjct: 522 LTLPPPALRKSSKSGPAWTVFQILQLAFPERLSCK----------GDRFMVDGSDLLKFD 571
Query: 584 YEGNLFQYLI---------KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
+ + +I ++ + L F + Q +L E L G +VSL DL ++
Sbjct: 572 FGVDAMASIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSVSLEDLSMS---- 627
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
+ MD I N ++ E + + LSY +
Sbjct: 628 --RADMDVIH---------------------NLII----REISPMVSRLRLSYRDELQ-- 658
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
++ ++ +A + K S+ + S + KLVQ + LGLQ S
Sbjct: 659 --------LENSLHKVKEVAANFMLKSYSMRNLIDIKSNSAITKLVQQTGFLGLQLSDKK 710
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
+ A + + + G + +V+ F GL+P E HS+ +R+
Sbjct: 711 KFYTKTLVEDMALFCKRKYGRISSSGD----FGIVKGCFFHGLDPYEEMAHSIAAREVIV 766
Query: 815 SDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG--EIGD 870
+ L PGTL + LM +RD+ DGTVRN N +VQF+Y ++ G E G
Sbjct: 767 RSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVVQFTYGVDSERGHQGLFEAG- 825
Query: 871 QPVGSLSACAISEAAYSA-LDQPISLLETSPLLNLKNVLECGSKKSNA--DQTMSLFLSN 927
+PVG L+A A+S AY A LD + S +K VL C N D+ + L+L+
Sbjct: 826 EPVGVLAATAMSNPAYKAVLDSTAN--SNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNE 883
Query: 928 KLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWIC---HFHVRK 984
+R E A V+N L+ + L D ++ Y Q + F C H H+ K
Sbjct: 884 CHCGKRFCQENAAYTVRNKLKKVSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDK 943
Query: 985 EIMKRTGL-------KEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECND 1037
+++ + K +I+SL ++ K T+ +S +C S Q C
Sbjct: 944 TLLQDWNISMQDILQKCEDVINSLGQKKKKKATD---DFKRTSLSVSECCSF--QDPCGR 998
Query: 1038 AFCVTVMIVENFKRTSIDLE-TIQMW---VMPFLLKTVVKGFREIKKVDILWKDKQKAS- 1092
++ ++ T DLE T+ + + P LL+TV+KG I +I+W +
Sbjct: 999 KDSDMPCLMFSYSATDPDLERTLDVLCNTIYPVLLETVIKGDPRICSANIIWNSSDMTTW 1058
Query: 1093 --KSHDDSFGELYLRVSM--SGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLA 1148
H GE L V++ S W +++ C ++ +ID RS P +I+
Sbjct: 1059 IRNCHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDACLSVLHLIDTKRSIPYSIKQVQEL 1118
Query: 1149 YGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSV 1208
G+ + + L +++ K +L EH++++AN ++ +G +G N+ G + ++
Sbjct: 1119 LGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGNMLGFNSGGYKALTRSLNI 1178
Query: 1209 SSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTL 1268
+PF +A P F KAA+ D+L V + WGK VGTG F+++++ + L
Sbjct: 1179 KAPFTEATLITPRRCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTGSQFELLWNQKETGL 1238
Query: 1269 S--KPVDVYNLL 1278
+ DVY+ L
Sbjct: 1239 DDKEETDVYSFL 1250
Score = 64.7 bits (156), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 1335 NDVLRLSNALKKILH--KYSIGQRLSEKDKTTVI-RALYFHPRRNEKLGIEPPDIEVTYH 1391
+DV + L+KI+H Y G +S+ DKT V+ + L FHP++ KLG I V H
Sbjct: 1741 SDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKH 1800
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437
+SRCF +V DG+ +DFSY K + L + P++AE + K+
Sbjct: 1801 TIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEEFIDKY 1846
>gi|168027571|ref|XP_001766303.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
gi|162682517|gb|EDQ68935.1| the plant-specific RNA polymerase IV largest subunit-like protein
[Physcomitrella patens subsp. patens]
Length = 1795
Score = 336 bits (861), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 299/1114 (26%), Positives = 518/1114 (46%), Gaps = 129/1114 (11%)
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVK-PNRKVLSCKQVSYLLK 204
D+S + +I EK +K+ +LP DYW F+ + ++ K P + L + +LK
Sbjct: 364 DISQILMLEAQIPEK--QKDNELPLDYWAFLQSAPARHQHYYKVPKQHYLLPSEALAILK 421
Query: 205 DVDPSI-----REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLF-FDNWTRHLK 258
+ + + +KC + PN R T+ H + F DN TR L+
Sbjct: 422 KIPEGAIGKLGMNRLVARPEGLIMKCVLIPPNCTRTTDYKHVNNTTAVRFGTDNVTRTLQ 481
Query: 259 KMVD-----YRGRDIELSHLVQ--DCLKISKLHLDKSSRKDSAE-------VRQKKNIDI 304
K+V + R + ++ Q + K+ L + K + + +++ +N +
Sbjct: 482 KLVAEIVHIRKTRAGKATNRTQRDESTKLQILTAEYLREKGAPKAVPGKEPLKRDRNGRV 541
Query: 305 SNSSGLRWIKDV----VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSW 360
+ RW K+ VLGK + + V+ GDP + +++IGIP +A++L + ER + W
Sbjct: 542 TKQDYHRWTKEWLSQNVLGKSGNFTAKAVLAGDPFLGIEQIGIPWLIAQKLTLPERASQW 601
Query: 361 NWERLS--VCISFRLLEKGELYVCRKGGLVRIRRIDAL-----------ELGDIIYRPLT 407
N +L V +S +L ++ E R+ R + + ++GDI++R +
Sbjct: 602 NHTKLQEYVNVSQKLQQESE----NTAHATRVERNEVVYQVLSKTSLKVQIGDIVHRHIQ 657
Query: 408 DGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIG 467
DGD V +NRPPS+H HSL+AL V + +T+NPL C PF DFDGD H + PQ++
Sbjct: 658 DGDYVYVNRPPSVHRHSLVALKVHIHH-QPTITVNPLICPPFSADFDGDIFHIFAPQSLQ 716
Query: 468 ARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR 527
A EL +L+A+ +Q+I++ G+ LL L QD+L AAHLL + L M QL ++ +
Sbjct: 717 AIAELDQLMAVKQQVISEHGGQPLLELTQDTLLAAHLLTSKKLFLDKATMDQLCLWASKK 776
Query: 528 FLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYE 585
I K K W+G+Q+F++ LP DFE P ++V+I GG++I G+ LR
Sbjct: 777 PPEAAILKSPKGGPFWTGEQVFALTLPEDFELGAPQEEVFIQGGEIIRWRNGTKLLRKGN 836
Query: 586 GNLFQYL-IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
++ L ++ ++D+L A VL WL V+G + L+D + + R+ ++ I
Sbjct: 837 DSVAAALCVQLGPVALVDYLNTATGVLHTWLQVQGFSTGLTDFQVTPNRTKRQEMLKSIL 896
Query: 645 YG--LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
L+ Q++C+F +++ D+ + L S ++ S SL +++ + L Q + +
Sbjct: 897 EESFLKSIQESCDFVRIL-DAKVQALDS-DENPSPESLT-KNIRF-------LEQVAREI 946
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
F+ + + KY + NSLL M ++GSKG++ KL+Q +GLQ ++ H
Sbjct: 947 FQKRRSEAGRIVAKYAEQRNSLLMMVESGSKGSMEKLLQQIAGMGLQ------LYKGQHL 1000
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
LS ++ +R A + + +V +S + GL E F H + R + ++
Sbjct: 1001 LSYSS-SRRPAMTYSSQLDWWEDMGLVRSSLVDGLKANELFRHVIADRTGILRKHVEVVQ 1059
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS----TPTGE--------- 867
PGTL + LMFF+RDL YDG+VR+ ++QF Y S PT E
Sbjct: 1060 PGTLFKALMFFLRDLHIMYDGSVRSQCSKNLIQFCYGGARGSLIPRKPTEETLAWEEDDH 1119
Query: 868 -------IGDQPVGSLSACAISEAAYSALDQPISL---LETSPLLNLKNVLECGSKKS-- 915
+ +PVG L+A AIS+ AY + SL + PL ++ L K S
Sbjct: 1120 RRWPLSVLAGEPVGVLAAAAISQPAYELMLDAPSLNGPFKPRPLNLIQETLYPREKSSLK 1179
Query: 916 NADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIY---------SPQ 966
D+ + L L + E LEV+ HL+ + L + + + Y P
Sbjct: 1180 PTDRCVVLRLVHCECTESLCLERRVLEVQAHLKRINLRMMAESVAVEYWNMEDSRAAGPS 1239
Query: 967 TGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQC-KAARTELKISVPDMLISNKD 1025
++ SPW+ H ++ ++ MK+ E ++ D + R C K ++T + + +
Sbjct: 1240 GDLVRLGSPWLGHINLSQDAMKQC---EVNVEDIVKRLCQKFSQTAGYVLKKNKMGQIFF 1296
Query: 1026 CSSINMQKECNDAFCVTVMIV-----------ENFKRTSID-LETIQMWVMPFLLKTVVK 1073
C S N ++ +C+ + + + +D L IQ ++P LL +K
Sbjct: 1297 CHSYNC--SFSNGYCLHFSPSLPIKMRHCSNEDRYNKALLDLLLRIQETIIPGLLDCTMK 1354
Query: 1074 GFREIKKVDIL--------WKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDC 1125
G I+ V ++ W + + D L + VS S W+++ C
Sbjct: 1355 GDERIETVRVVCEGPASTTWHRRFAHCTGNLDEELVLEVYVSPSSSKSRGMAWASVKQAC 1414
Query: 1126 HQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFL 1159
+ D++DW RS P +I+ + GI+ Q +
Sbjct: 1415 VSLKDLVDWNRSMPYSIQEIRCSLGIEVAYQIVV 1448
>gi|218190083|gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
Length = 1867
Score = 332 bits (851), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 343/1294 (26%), Positives = 543/1294 (41%), Gaps = 161/1294 (12%)
Query: 7 EEGLEVPSGILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAK 64
+ + V G + I L +ST+ E S+ + + S++ NP LGLP T +C SCGA
Sbjct: 5 QSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGAS 64
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP ++++ ++LN +C KC ++K + K C
Sbjct: 65 ENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSC 124
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEE 184
YC PA LS K++ KTA E K + + W F+ D
Sbjct: 125 YYCRDLPA---------LSLKEI--KTADGAFRLELKMPPRKFMTEGSWNFL--DKYGFH 171
Query: 185 NSVKPNRKVLSCKQVSYLLKDVDPSIREEFI----LSKDAPFLKCFPVTPNNHRVTEVPH 240
+ + + L ++ +LK + + + +++ +K PV PN +P
Sbjct: 172 HGGTSHCRTLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPN---CLYIPE 228
Query: 241 AFSHEKKLFFDNWTRHLKKMVD--------YRGRDIELSHLVQDC---LKISK-LHLDKS 288
+ + +D LKK++ G SH V+ C L I++ +HL +
Sbjct: 229 FTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGT 288
Query: 289 SRKDSAEVRQ-KKNIDISNSSGLRWI---KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIP 344
+R ++ + D S S +W+ + + + K + R V+TGDP I + IG+P
Sbjct: 289 TRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLP 348
Query: 345 CQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDA-----LELG 399
+VA+R+ E++ N RL +++KG R G + + L++G
Sbjct: 349 SEVAKRITFEEQVTDINLNRLQ-----EIVDKGLCLTYRDGQATYAITVGSKGHTTLKVG 403
Query: 400 DIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLH 459
I R + DGD+V +NRPPS H HSL A V V V INPL C+PF DFDGDC+H
Sbjct: 404 QTISRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHE-DHTVKINPLICAPFAADFDGDCVH 462
Query: 460 GYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ 519
Y PQ++ A+ E EL +++KQL + SG+ L L DSL A M +LS Q
Sbjct: 463 IYYPQSLAAKAEALELFSVEKQLTSSHSGKVNLQLVSDSLLALKH-MSSRTMLSKEAANQ 521
Query: 520 LQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSS 579
L M PD I W+ Q+ LP V S + + S
Sbjct: 522 LAMLVTCSL--PDPAVIKSKPYWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKES 579
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ ++ L + + L FL Q +L E + + G +VSL D + K+L
Sbjct: 580 VQTSFSDLVYSTLSVKGPGEALQFLNVLQPLLMELILLDGFSVSLQDFNVP------KVL 633
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
L EAQ Q L+++ Q A +Q
Sbjct: 634 -------LEEAQKNIEKQSLILE---------------------------QSRFAENQVV 659
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ--HSLAPLSF 757
+ DI+ + K + L + S ++ K+VQ +GLQ S
Sbjct: 660 EMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSR 719
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R + N+ A ++Y +V +S+ GLNP E +H++++R++ +
Sbjct: 720 RLVEDCYYTFVNKHPAVREEHSPEAY---GLVRSSYFHGLNPYEELVHAISTREAIVRSS 776
Query: 818 ADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG-DQPVG 874
L PGTL + LM +RD+ YDGTVRN I+Q +Y + IG +PVG
Sbjct: 777 RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVG 836
Query: 875 SLSACAISEAAYSA-LDQPISLLETSPLLNLKNVLECGSKKSN--ADQTMSLFLSNKLGK 931
L+A AIS AY A LD S + +K +L+ S+ N D+ + LFL++
Sbjct: 837 VLAATAISNPAYKAVLD--ASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCA 894
Query: 932 RRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTG---SMKHFSPWICHFHVRKEIMK 988
++ E A+ V+ L + L D + I Y Q G + + + H H+ + ++
Sbjct: 895 KKFCKEKAAIAVQGCLRRITLEDCATDICIEYQKQIGLDGTSEAAPALVGHIHLDRAHLE 954
Query: 989 RTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVEN 1048
R + IS D+L QK C V
Sbjct: 955 R----------------------INISTEDIL-----------QK------CQEVSGKYG 975
Query: 1049 FKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSM 1108
K+ + IQ K V G V K+ QKASK + ++
Sbjct: 976 KKKGHLSDPRIQE------AKIVWVGSDATSWV----KNTQKASKGEPAVEIIVEEEEAL 1025
Query: 1109 SGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISD 1168
HI W M+ C ++++ID RS P I+ GI + L + +
Sbjct: 1026 ----HIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVRM 1081
Query: 1169 TGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAA 1228
K++L +HL++VAN+++ TG G N G + V PF ++ P F KAA
Sbjct: 1082 VAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKAA 1141
Query: 1229 KAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYS 1262
+ D+L V + WGK + GTG F I+++
Sbjct: 1142 EKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWN 1175
Score = 47.0 bits (110), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 1241 DALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPVSSKQNEKLKVCKAQGLIS 1300
D WG VP+ + ++ +G DV+N S + +N+ K S
Sbjct: 1620 DKESWGNVPASPSDSAWNAAPVSQGD------DVWN--SAEANESRNKDWK--------S 1663
Query: 1301 DKCGAKFGDFAFKGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEK 1360
D GA+ G++ + + E I ++ +++KI + +LS +
Sbjct: 1664 DGWGARGGNWRGQRNNPAEEEKI----------LGEIETTVLSIRKIFRESIDSIKLSPE 1713
Query: 1361 DKTTVIR-ALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVI 1419
D+ + L HP + K+ E I V H Q+SRC +V DG+ DFSY KC+
Sbjct: 1714 DEKFIKENVLEHHPEKQSKVSGEIDHIMVDKHQVFQDSRCLFVVSSDGTRSDFSYLKCME 1773
Query: 1420 GALEIIAPEKAEIYRAKW 1437
+ PE + + K+
Sbjct: 1774 NFVRKTYPEHGDSFCKKY 1791
>gi|449445170|ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
1-like [Cucumis sativus]
Length = 2019
Score = 329 bits (844), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 363/1393 (26%), Positives = 591/1393 (42%), Gaps = 244/1393 (17%)
Query: 38 IGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEG-------------------------- 71
I S+++NP LGLP +C SCG + CEG
Sbjct: 38 ITHASQLSNPFLGLPIEFGKCESCGTSEPGKCEGIDFFFXIFNVLHNTTXQVVFIFHLSG 97
Query: 72 HFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNP 131
HFG+I+ P I HP ++++ K+L+ +C KC ++K + E R+ C +
Sbjct: 98 HFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTKFPSKNIGFAE--RLLSSCCEDA 155
Query: 132 AQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQEENSVKPN 190
+Q R +K G + + +++ + S L + +W F+ + + +N
Sbjct: 156 SQVTIR-----EAKKADGASYLQLKVPSRTS-----LQERFWDFLERYGFRYGDNFT--- 202
Query: 191 RKVLSCKQVSYLLKDVDPSIREEFI----LSKDAPFLKCFPVTPNNHRVTEVPHAFSHEK 246
R +LS V +LK + R++ +D L+ PV PN V E+ +
Sbjct: 203 RTLLSV-MVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVT--- 258
Query: 247 KLFFDNWTRHLKKMV--------------DYRGRDIELSHL---VQDCLKISKLHLDKSS 289
+ D LKK++ ++ ++E + L V L++ K+S
Sbjct: 259 VMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTV--KAS 316
Query: 290 RKDSAEVRQKKNI-DISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVA 348
R A K + D S + L ++ + + K + R V+TGD + EIG+P +VA
Sbjct: 317 RGIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVA 376
Query: 349 ERLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDII 402
+R+ ER++ N L +C+++R + Y R+G + L+ G I+
Sbjct: 377 QRITFEERVSVHNIRYLQELVDKKLCLTYR--DGSSAYSLREGSMGHTY----LKPGQIV 430
Query: 403 YRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYI 462
+R + DGDIV INRPP+ H HSL AL V L VV INPL C P DFDGDC+H +
Sbjct: 431 HRRIMDGDIVFINRPPTTHKHSLQALRV-YLHDDHVVKINPLICGPLSADFDGDCIHLFY 489
Query: 463 PQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM 522
PQ+I A+ E+ L +++KQL++ SG L L DSL + ++ L QQL M
Sbjct: 490 PQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMFR-KYFLGKAAAQQLAM 548
Query: 523 FCPHRFLSPDIFKISKDSV-WSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWL 581
F P + + S+ W+ Q+ +LP F+ D Y+ + S++L
Sbjct: 549 FVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDC---HGDSYL-------IKNSNFL 598
Query: 582 R-DYEGNLFQYLI---------KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS 631
+ D++ + LI ++ ++VL F + Q +L E + G +V L D +
Sbjct: 599 KFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDYSMPM 658
Query: 632 ---HSCSRKI-LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
+ + I ++ + Y LR F +L+ N L S K
Sbjct: 659 AFLQALQKNIQVLSPLLYQLRST-----FNELVELQLENHLRSVKVP------------- 700
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
N K +SL +F + S+ + K+VQ LG
Sbjct: 701 ----------------------FTNFILKL----SSLGKLFDSKSESAINKVVQQIGFLG 734
Query: 748 LQHSLAP--LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA---VVENSFLTGLNPLEC 802
LQ S S +++ NR + K PSA +V+ F GL+P E
Sbjct: 735 LQLSDKGRFYSKSLIEDVASLFHNRYSSD------KIDYPSAEFGLVKGCFFHGLDPYEE 788
Query: 803 FIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+HS+++R+ + L PGTL + LM +RD+ YDGTVRN N I+Q Y ++
Sbjct: 789 MVHSISTREVMVRSSRGLTEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGMKA 848
Query: 861 TST------PTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLN-----LKNVLE 909
P GE PVG L+A A+S AY A +L+++P N +K +L
Sbjct: 849 GMMQPYSLFPPGE----PVGVLAATAMSTPAYKA------VLDSTPSSNSSWDMMKEILL 898
Query: 910 C--GSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQT 967
C K D+ + L+L+N R++ E A VK+HL+ + L D MI Y+ Q
Sbjct: 899 CKVSFKNEPIDRRVILYLNNCACGRKYCNENAAYVVKSHLKKVTLKDAAMDFMIEYNRQP 958
Query: 968 GSMKHFSPWICHFHVRKEIMKRTGLKEHSI-IDSLYRQCKAARTE-----------LKIS 1015
+ H H+ + R LKE +I + + R+C+ + L+ S
Sbjct: 959 TPSGLGPGLVGHVHLNR---VRMLLKELNIDMTEVLRRCQETMSSFKKKKKKIAHALRFS 1015
Query: 1016 VPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGF 1075
+ + ++ ++ C + T + + +RT+ L I V P L +T++KG
Sbjct: 1016 ISEHCAFHQWNGEESIDMPCLIFWHQTRDV--HLERTAHILADI---VFPLLSETIIKGD 1070
Query: 1076 REIKKVDILWKDKQKASKSHDDSF---GELYLRVSM--SGQCHITSLWSALMNDCHQIMD 1130
IK ++W S + S GEL L V + S W +++ C ++
Sbjct: 1071 PRIKSASVIWISPDSTSWQKNPSRWQDGELALDVCLEKSAVKQNGDAWRNVLDCCLPVLH 1130
Query: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190
+ID RS P I+ GI + L ++S K +L +HL+++AN+++ TG
Sbjct: 1131 LIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGVLGDHLILLANSMTCTGN 1190
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQA----------------------------FFSNPGA 1222
+G N+ G + ++ PF +A ++ P
Sbjct: 1191 MIGFNSGGYKALSRALNIQVPFTEATLFVSPFHSLVLSLYMKFNFFFLFFLNGXYTTPRK 1250
Query: 1223 SFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGE--GRTLSKPVDVYNLLST 1280
F KAA+ D+L V + WGK +VGTG FDI++ + G VDVYN L
Sbjct: 1251 CFEKAAEKCHKDSLSSIVASCSWGKHVAVGTGSRFDILWDQKELGCKQDDVVDVYNFLHM 1310
Query: 1281 PVSSKQNEKLKVC 1293
S K E C
Sbjct: 1311 VRSGKSEEPTSAC 1323
Score = 70.9 bits (172), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
Query: 1336 DVLRLSNALKKILHK--YSIGQRLSEKDKTTVIRALY-FHPRRNEKLGIEPPDIEVTYHP 1392
D+ + +++K++H+ Y+ G LS +D++ V+++++ FHP + K+G V+ H
Sbjct: 1874 DIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHS 1933
Query: 1393 EHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
Q SRCF +V DG EDFSY KC+ ++ P+ AE++ AK+ R
Sbjct: 1934 SFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFR 1980
>gi|357515099|ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 2032
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 356/1380 (25%), Positives = 570/1380 (41%), Gaps = 244/1380 (17%)
Query: 15 GILTGISLGISTDTEKEKLSVM--EIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACE-- 70
G + GI ++T E S+ +I S++ NP LGLP C SCG + CE
Sbjct: 64 GKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESCGTSEAGKCEGL 123
Query: 71 ----------------------------GHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
GHFG+I+ P I HP ++++ K+L+ +C C
Sbjct: 124 LFDHFLYCHSDGKMLYFKRIGLNNYYFSGHFGYIELPVPIYHPSHVTELKKILSLVCLSC 183
Query: 103 KTIRKERQKGAGSSRKEQPRVCKYCVR--NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEK 160
+R ++ K SS R+ C N AQ R ++ + D + A+ K
Sbjct: 184 --LRLKKTKVPSSSSGLAQRLLSPCCEDVNAAQVSIR---EVKTADGACYLAL------K 232
Query: 161 LSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQ---VSYLLKDVDPSIREEFILS 217
+SK K+ D +W F+ + R +L C+ + L ++ + +
Sbjct: 233 VSK--SKMHDGFWTFL--EKYGYRYGGDHTRALLPCEAMEIIKRLPQETKKKLAGKGYFP 288
Query: 218 KDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDY-----RGRDIELSH 272
+D LK PV PN V V S R L + V+ G SH
Sbjct: 289 QDGYILKYLPVPPNCLSVPVVSDGVSIMSSDPALTILRKLLRKVEVIRSSRSGEPNFESH 348
Query: 273 LVQ--DCLKISKLHLDKSSRKDSA---EVRQKKNIDISNSSGLRWIKDV-VLGKRNDDCF 326
V+ D + +L +A E N ++++SS W++ + L R F
Sbjct: 349 QVEANDLQSVVDQYLQIRGTSKAARDIETHYGVNKELNDSSTKAWLEKMRTLFIRKGSGF 408
Query: 327 --RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL------SVCISFRLLEKGE 378
R V+TGD K+ E+GIP +VA+R+ ER++ N L ++C++++ E
Sbjct: 409 SSRNVITGDGYKKINEVGIPLEVAQRITFEERVSIHNIHYLQKLVDENLCLTYK--EGMS 466
Query: 379 LYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
Y R+G + L+ G I++R + DGD V INRPP+ H HSL AL V +
Sbjct: 467 TYSLREGS----KGHTYLKPGQIVHRRIMDGDTVFINRPPTTHKHSLQALVVYIHD-DHT 521
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
V INPL C P DFDGDC+H + PQ++ A+ E+ EL +++KQL++ SG L L DS
Sbjct: 522 VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLSADS 581
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFE 557
L + +L++ S L + Q+ MF P + K + DS W+ Q+ LP F+
Sbjct: 582 LLSLKMLVK-SCFLDRVAANQMAMFLLLPLPMPALLKATTGDSYWTSIQILQCALPFSFD 640
Query: 558 YTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIK---------RYRDKVLDFLYAAQ 608
T GG+ + + D+ ++ +I + + L+F Q
Sbjct: 641 CT---------GGRYLIRQREILEFDFTRDILPSIINEIAASIFFSKGPQEALNFFDVIQ 691
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFL 668
L E + G +V L D ++ ++++ I
Sbjct: 692 PFLMENIFAHGFSVGLQDFSIS--RAVKRVINRSI------------------------- 724
Query: 669 MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMF 728
K S R L+G + Q+ + V DI+ + K L +
Sbjct: 725 --GKVSPLLRQLRGMYKELVAQQ-----------LEKVIQDIELPVINFALKSTKLGDLI 771
Query: 729 KAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC--AKSYIPS 786
+ SK + K++Q LG Q F S + + +C K PS
Sbjct: 772 DSKSKSAVDKVIQQIGFLGQQL------FERGKFYSKGLVEDVASHFQLKCFYDKDDYPS 825
Query: 787 A---VVENSFLTGLNPLECFIHSVTSRD--SSFSDNADLPGTLTRRLMFFMRDLCTAYDG 841
A +++ F GL+P E +HS+ +R+ S PGTL + LM +RD+ YDG
Sbjct: 826 AEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMAILRDVVICYDG 885
Query: 842 TVRNAYGNQIVQFSYNIEGTST-----PTGEIGDQPVGSLSACAISEAAYSALDQPISLL 896
TVRN N I+QF Y I+ P GE PVG L+A ++S AY A +L
Sbjct: 886 TVRNVCSNSIIQFEYGIQSGDAAQHLFPAGE----PVGVLAATSMSNPAYKA------VL 935
Query: 897 ETSPLLN-----LKNVLECGSKKSNA--DQTMSLFLSNKLGKRRHGFEYGALEVKNHLEC 949
+ SP N +K +L C N D+ + L+L++ R + E A V+N L
Sbjct: 936 DASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLRK 995
Query: 950 LMLSDIVSTSMIIYSPQTGSM--KHFSPWICHFHVRKEIMKRTGLKEHSI-IDSLYRQCK 1006
+ L D ++ Y Q + +CH +K L+E I + +Y++C+
Sbjct: 996 VSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIR-----LKEVKLEELKINMTEVYQKCQ 1050
Query: 1007 AARTEL----KISV---PDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLE-- 1057
K+S LI ++ CS A CVT + + +DL+
Sbjct: 1051 EKLNSFSRKKKLSPFFKRTELIFSEFCS----------APCVTFLWPD-----GVDLDQT 1095
Query: 1058 --TIQMWVMPFLLKTVVKGFREIKKVDILWKDK------QKASKSHDDSFGELYLRVSMS 1109
+ + P LL+T+++G I I+W + + SKS S GEL L V +
Sbjct: 1096 TKVLADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKS---SNGELALDVILE 1152
Query: 1110 GQCHITS--LWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAIS 1167
+ S W +++ C ++ +ID RS P I+ GI + L +++
Sbjct: 1153 KEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVR 1212
Query: 1168 DTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQA------------ 1215
K +L EHL+++A++++ G VG N G + + PF A
Sbjct: 1213 MVAKGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFVSALVISKL 1272
Query: 1216 ---------FFSN-----PGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIY 1261
+F N P F +AA+ D+L V + WGK +VGTG FDI++
Sbjct: 1273 QDVFCYYFSYFVNVIMQTPRKCFERAAEKHHSDSLSSIVASCSWGKHVAVGTGSKFDIVW 1332
Score = 62.0 bits (149), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 1336 DVLRLSNALKKI--LHKYSIGQRLSEKDKTTVIRALY-FHPRRNEKLGIEPPDIEVTYHP 1392
D+ + ++++I L Y+ G L+ +D+ V+ ++ HP + K+G+ + V+ H
Sbjct: 1850 DIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGVGVDHVMVSKHS 1909
Query: 1393 EHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
Q+SRC +V +DG EDFSY KC+ + PE AE + K+ R
Sbjct: 1910 NFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFR 1956
>gi|68300836|gb|AAY89357.1| RNA polymerase IV largest subunit [Marchantia polymorpha]
Length = 1008
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 255/896 (28%), Positives = 412/896 (45%), Gaps = 108/896 (12%)
Query: 448 PFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLME 507
P++ DFDGDCLH ++PQ +R EL +L+ + Q++ +L L QD + A +L+
Sbjct: 1 PYNADFDGDCLHVFVPQTEESRAELHQLMTIPAQILPSPDENTILGLSQDYVLATYLVTS 60
Query: 508 DSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFEYTFPSKDVY 566
+ L M QL M+ + P I K K +W+GKQ+ + +P F + +
Sbjct: 61 SPLFLPKDSMHQLAMWTKKQLPVPTIVKSPKLGPLWTGKQVIDLAIPEGFSFQSNNGATR 120
Query: 567 ISGGKLIS-AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLS 625
I G+++S E S+WL +G L + + ++ D ++ + +Q VL EWL +G +VSL
Sbjct: 121 IHDGEILSCGEKSNWLASTKG-LVRIIAQKNTDAAVEHIDCSQAVLREWLLSQGFSVSLE 179
Query: 626 DLYLASHSCSRKILMDEIFYGLREAQDTCNF------QQLMVDSHMNFLMSAKDSESTRS 679
D Y A R+ L +I L AQ C F + L +++ N MS DS +
Sbjct: 180 DFYAAPDQDMRRKLKYKIEDNLEHAQ--CMFVCRGDKKILNINTSSNASMSILDSAAP-- 235
Query: 680 LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKL 739
S ++R L A++ +F+ I + S N LL M ++GSKG+ LK+
Sbjct: 236 ------SERRRRRHGLEDAAISSFRQTQSQIGETFIESISDSNCLLTMVRSGSKGSNLKV 289
Query: 740 VQHSLCLGLQ---------HSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVE 790
+Q LG Q P R + + N L+ D E +V+
Sbjct: 290 MQQIGSLGFQVIKGEELLSTHKNPKLVRLAASMGYSMENDLQ--DIWEI------RGLVK 341
Query: 791 NSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYG 848
+S L GL P E F+H+++ RD F + D+ PG L +RLM F+RD+ AYDGTVRN G
Sbjct: 342 SSLLDGLEPHEFFVHAISVRDGLFRQSLDIAEPGELFKRLMLFLRDIHIAYDGTVRNMGG 401
Query: 849 NQIVQFSY-----------NIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLE 897
+I+QF Y N S T GD VG L+A AIS+ AY + + L
Sbjct: 402 LEIIQFEYDGGKCMTQDSENKNTLSNKTVMPGD-AVGILAATAISQPAYQVMLEATQCLA 460
Query: 898 TS---PLLNLKNVL--ECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLML 952
+ PL L+ L SK +D+ L L ++ E L++++ L+ + +
Sbjct: 461 SRKIRPLELLQESLFPRSTSKLKESDRVSILRLHRCKSDGKYCEERRVLKLQDELQPVTM 520
Query: 953 SDIVSTSMIIYSPQTGSM-------------KHFSPWICHFHVRKEIMKRTGLKEHSIID 999
+ + + I YS + F PW+ H + K ++ + + I+D
Sbjct: 521 EILATETAIAYSSDSSEQWEGLDCAATELKQTEFFPWVGHVQLDKMVLTEKKISQEMILD 580
Query: 1000 SLYRQCKAART-ELKISVPDMLISNKDCSSINM----------QKECNDA---FCVT--- 1042
L+ + K ++ K + +++ +D + +M QKE F +T
Sbjct: 581 RLHSKVKIHKSVSRKFRIGNIVFCIRDSCTCDMNIYQETVKLRQKEVVGPCLHFLLTRST 640
Query: 1043 ---VMIVENFKRTSID----LETIQMWVMPFLLKTVVKGFREIKKVDILWKD-------- 1087
V ++ K S + LE +Q +++P +LKTVVKG +++ V+ILW+D
Sbjct: 641 RGKVRSIKTVKEVSNETVELLEVLQNFIIPEILKTVVKGSEKLQSVNILWEDATWSPPVK 700
Query: 1088 -KQKASKSHDDSFGELYLRVSMSGQCHITSL---WSALMNDCHQIMDMIDWTRSHPDNIR 1143
++ S GEL L V++ + + S W + C Q +D +DW RS P +I+
Sbjct: 701 SEENDSNVMKSGRGELVLEVTVK-ELYSQSRGMPWRTVQESCIQFVDYVDWQRSSPYSIQ 759
Query: 1144 SFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQR 1203
G+DA L LE A G +I +HL +VA+ + +GE GL + G
Sbjct: 760 EIKSVLGVDAARDVLLQRLELA---AGNSIGNKHLKLVADFMVYSGEVQGLTSYGYRDWM 816
Query: 1204 KHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDI 1259
+ SSPF F P F++A + GA + G + + +GK +GTG FD+
Sbjct: 817 RSLKFSSPFTAGAFRAPIKHFLEAGRKGATERFSGVLASSVFGKKVPLGTGAVFDL 872
>gi|68300839|gb|AAY89358.1| RNA polymerase IV largest subunit [Sphagnum sp. JL-2005]
Length = 969
Score = 293 bits (751), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 238/882 (26%), Positives = 415/882 (47%), Gaps = 90/882 (10%)
Query: 448 PFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLME 507
P++ DFDGD H ++PQ++ A VEL EL+ + +Q+I Q G LL L QD+L AAHL+
Sbjct: 1 PYNADFDGDIFHIFVPQSVEAMVELKELMTVQQQIICSQGGLPLLGLTQDTLLAAHLMTC 60
Query: 508 DSVLLSHLQMQQLQMFCPHRFL-SPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDV 565
V L + M QLQM+ + I K K +W+G+QL+S+ LP ++ +V
Sbjct: 61 QKVFLDKVSMDQLQMWSSAAVVPEAAILKSPKGGPLWTGEQLYSLTLPAGVDFHTLDGEV 120
Query: 566 YISGGKLISAEGSS-WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVS 623
I G+++ SS WL+ +L + + + V+++L +A+ +L WL G +
Sbjct: 121 LIRNGEILKTGFSSKWLQKGRNSLIDAICDQSGPEAVVEYLNSAKGLLHAWLDSNGFSTG 180
Query: 624 LSDLYLASHSCSRKILMDEIFYGL--REAQDTCNFQQL----MVDSHMNFLMSAKDSEST 677
L+D + S++ R+ ++ + R + + N Q+ SH++ + +
Sbjct: 181 LTDFLVTSNAKERRSMLQRVSVDCLQRAKEQSINTLQICDAKFQLSHLSVDLEVDGAFDR 240
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGS-KGNL 736
+ LS + Q L ++ AF+ + N+ + NSL +M KAGS K ++
Sbjct: 241 LEVNPASLSNKVQ---MLESIAIKAFRASMAGMGNIVQESSVSQNSLFSMVKAGSTKASM 297
Query: 737 LKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTG 796
KL+ C+GLQ F H L+ + A ++ + + +V+NS + G
Sbjct: 298 SKLLDQIACMGLQLYKGEHMLPFSHVLNNS------APLESQLQEWWEDHGLVQNSLVDG 351
Query: 797 LNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
L + F H + +R S + ++ PGTL + LM F+RDL YDGTVR+ G ++VQF
Sbjct: 352 LTAFQLFNHVIANRTSILRKHVEVVQPGTLFKVLMLFLRDLHVGYDGTVRSQCGQKVVQF 411
Query: 855 SYNIEGTST--------------PTGEIGDQPVGSLSACAISEAAY-SALDQP-ISLLET 898
Y G + +PVG L+A A+S+ AY S LD P S +
Sbjct: 412 CYG--GARARHRRSRKEDPDLRWKVSYLAGEPVGVLAATALSQPAYESMLDAPHHSGWKI 469
Query: 899 SPLLNLKNVL---ECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDI 955
PL ++ L E G K+ D+ L L++ + E L V+N L ++L +
Sbjct: 470 RPLELVQETLYPREKGDPKA-VDRRAILRLTHCDCSKSSCLERRVLRVQNQLRRIILKTL 528
Query: 956 VSTSMIIYSPQT---------GSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCK 1006
TS+I Y T +++ SPW+ H H+ KE++++ L I+ L R+
Sbjct: 529 AQTSIIEYWDATNERKAGVNGAALRLGSPWLGHIHISKEVLQQHELTMTKIVGKLQRKFS 588
Query: 1007 AARTELKISVPDML---------ISNKDCSSIN------MQKECNDAFCVTVMIVENFKR 1051
R K + + +S C + MQ + +D + +
Sbjct: 589 ILRPITKKNPLGQIFFCHSEFCDVSRGLCIHFSPKLPKKMQNQYDD---------DEYSH 639
Query: 1052 TSIDL-ETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFG-------ELY 1103
+ ++L + ++ ++P LL+ +KG ++ V I+ +D S H + G EL
Sbjct: 640 SLLELMKKMRDRILPALLECTIKGDERLESVKIVQEDCTWPS-WHPKTAGVVRPGEEELV 698
Query: 1104 LRVSMSGQCHITS----LWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFL 1159
L V + H S W+A+M C +M+ +DW RS P +I+ A GI+ Q +
Sbjct: 699 LEVVATSSLHQKSKRNMAWNAVMEACVPVMEEVDWQRSMPYSIQEMKHALGIEVAYQMVV 758
Query: 1160 TNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSN 1219
+ A+ +T + EH+ ++ +T++ +G+ G G K + +S+PF +A +
Sbjct: 759 QRVALALEETAPHTYREHIKLIGDTMTYSGDANGFTFSGFRDMIKSAHISAPFTEAAYQK 818
Query: 1220 PGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIY 1261
P +F+ AA GA+D+L+ + + WG+ +GTG ++ +
Sbjct: 819 PIRNFLDAAAKGAMDSLESVMTSCVWGREAPLGTGTKIELRW 860
>gi|224072881|ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit [Populus trichocarpa]
Length = 924
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 276/1000 (27%), Positives = 452/1000 (45%), Gaps = 141/1000 (14%)
Query: 15 GILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGH 72
G +TGI G++T E S+ + I S++TNP LGLP +C SCG + CEGH
Sbjct: 12 GEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESCGTSEPGKCEGH 71
Query: 73 FGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPA 132
FGFI P I HP +S++ ++L+ IC KC +++ + + + E+ C A
Sbjct: 72 FGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAER---LLSCCEECA 128
Query: 133 QWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQEENSVKPNR 191
Q R K+ G A +E+ KL ++ +L D W F+ + + ++ +P
Sbjct: 129 QISIR-----EVKNTDG--ACFLEL--KLPSRS-RLRDGCWNFLERYGFRYGDDFTRP-- 176
Query: 192 KVLSCKQVSYLLKDVDPSIREEF----ILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKK 247
+L C +V +LK + R++ +D L+ PV PN V V +
Sbjct: 177 -LLPC-EVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGIT---V 231
Query: 248 LFFDNWTRHLKKMVD-----------------YRGRDIELSHLVQDCLKISKLHLDKSSR 290
+ D LKK++ ++ L +V L++ K+SR
Sbjct: 232 MSSDLSISMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRG--TTKTSR 289
Query: 291 K-DSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAE 349
D+ +K++ + + + L ++ + + K + R V+TGD + ++GIP ++A+
Sbjct: 290 DVDTRYGVKKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTLVNQVGIPYEIAQ 349
Query: 350 RLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIY 403
R+ ER++ N L +C++++ + Y R+G + L G +++
Sbjct: 350 RITFEERVSVHNMRYLQELVDNKLCLTYK--DGSSTYSLREGS----KGHTFLRPGQVVH 403
Query: 404 RPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIP 463
R + DGDIV INRPP+ H HSL AL+V V V INPL C P DFDGDC+H + P
Sbjct: 404 RRIMDGDIVFINRPPTTHKHSLQALSVYVHD-DHAVKINPLICGPLSADFDGDCVHLFYP 462
Query: 464 QAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF 523
Q++ A+ E+ EL +++KQL++ SG L L DSL + ++ + + L QQL MF
Sbjct: 463 QSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMMFK-ACFLGKSAAQQLAMF 521
Query: 524 CPHRFLSPDIFKIS-KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLR 582
P + K++ W+ Q+ M LP F SG + + +
Sbjct: 522 ISPYLPQPALLKVNCFFPHWTAHQILQMALPACFN---------CSGERFLIINSNFLKV 572
Query: 583 DYEGNLF-----QYLIKRYRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
D+ ++ + LI + +K VL F + Q +L E L G +VSL D ++
Sbjct: 573 DFNRDVVASVINEILISMFFEKGSGAVLKFFNSLQPMLMENLFSEGFSVSLEDFSISRAV 632
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
R + E F + CN + S N L+ + R
Sbjct: 633 KQR---IPESFKAISPL--LCNLR-----STFNELVELQVENHIR--------------- 667
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS-- 751
D++ ++ ++L + + S + K+VQ LGLQ S
Sbjct: 668 ---------------DVKQPVREFILTSSALGYLIDSKSDAAVTKVVQQIGFLGLQVSDR 712
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
S +L+ ++ A + Y +++NSF GL+ E HS+++R+
Sbjct: 713 GKLYSKTLVEDLASHFLSKYPANLFDYPSAQY---GLIQNSFFHGLDAYEEMAHSISTRE 769
Query: 812 SSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE-GTSTPTGEI 868
+ L PGTL + LM +RD+ YDGTVRN N I+QF Y ++ GT + +
Sbjct: 770 VIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVSSNSIIQFEYGVKVGTESQSLFP 829
Query: 869 GDQPVGSLSACAISEAAYSALDQPISLLETSPLLN-----LKNVLEC--GSKKSNADQTM 921
+PVG L+A A+S AY A +L+++P N +K +L C G K AD+ +
Sbjct: 830 AGEPVGVLAATAMSNPAYKA------VLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRV 883
Query: 922 SLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMI 961
L+L++ R + E A VKNHLE + L DI MI
Sbjct: 884 ILYLNDCGCGRNYCQERAAYLVKNHLEKVSLKDIAKCFMI 923
>gi|68300831|gb|AAY89355.1| RNA polymerase IV largest subunit [Ceratopteris thalictroides]
Length = 836
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 233/856 (27%), Positives = 396/856 (46%), Gaps = 70/856 (8%)
Query: 450 HGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDS 509
+ DFDGDCL ++PQ++ ++ E+ EL+ ++ Q++ G+ +L QD+L A L
Sbjct: 1 YADFDGDCLAVFVPQSLESKTEVKELMMVENQMLTSHGGQCTFTLTQDALLGACKLTSPH 60
Query: 510 VLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISG 569
+ LS M+ M P + K K W+G Q F + LP Y V IS
Sbjct: 61 LFLSRQTMEIACMNTSSTLPKPAVIKSPKGPFWTGVQCFQLSLPSAVNYDM--NGVRISC 118
Query: 570 GKLIS-AEGSSWLRDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDL 627
G++++ WL +L +I+++ V L++L A + +L EW+S +G TV L D+
Sbjct: 119 GEILNITHDPEWLGGSRNSLLYQIIQQFGGNVALNYLGAVESLLVEWISRKGFTVGLYDV 178
Query: 628 YLASHSCSRKILMD--EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
Y + +R L ++ G E Q Q L + S ++ L K S +
Sbjct: 179 YATADWTTRDKLKKAIQVNIGEEEKQVRRKLQDLSLQSDIS-LGEMKLSMGLSVESNAII 237
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
R A + ++ + + I++ + K + DNS+L M + GSKG++ K +
Sbjct: 238 PSMYSRMA--EKIALKYMQKLCSHIESDSVKNANADNSMLEMVRCGSKGSIKKFSEQFAF 295
Query: 746 LGLQHSLAPLSFRFPH-----ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPL 800
LGLQ P +F H +LSC + + + + +V++SF GL+P
Sbjct: 296 LGLQ----PYKGKFMHPTKNMQLSCMHQDEQNVMYDQD-GFLWGERGIVKSSFAEGLSPQ 350
Query: 801 ECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNI 858
E F+H+V+ R++ + PG L + ++ F RD+C YDGTVR+ +G I+QF Y
Sbjct: 351 EFFVHTVSYRETMIHKALRVSEPGYLYKNMVLFARDVCMHYDGTVRSEHGKHIIQFDYGC 410
Query: 859 EGTSTPTGEIGDQPVGSLSACAISEAAYSAL-DQPISL--LETSPLLNLKNVLECGSKKS 915
+ ++ P +PVG L+A AIS+ AY L + P L L PL L+ + S+K+
Sbjct: 411 KESNMPGSTPPGEPVGFLAATAISQPAYQMLLESPNQLNDLAFCPLELLQETIY--SRKA 468
Query: 916 NADQTMSLFLSNKLGKRRHGF--EYGALEVKNHLECLMLSDIVSTSMIIY--SPQTGSMK 971
+ + L + + K GF E A+EV L+ + L ++ + + + + Q G K
Sbjct: 469 SVSKPNDLRVVLYI-KEVDGFSKEAAAMEVSQSLQHVTLEMLLCSLSVKFVGNMQAGFWK 527
Query: 972 HF-----SPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKA---------ARTELKISVP 1017
SPWI H + + + L+ +I L AR +S P
Sbjct: 528 GLLPTKKSPWIVHMLLDQTALSAYNLEAEAIAKKLLNTNSVHSFGALHFVARGSCDLSCP 587
Query: 1018 DML-ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFR 1076
+S C S FC++ + + L I+ ++P ++K V+G R
Sbjct: 588 GCTRLSENPCLS----------FCLSTAQSPSIEEA---LSQIRDIIVPHIMKVSVRGDR 634
Query: 1077 EIKKVDILWKDKQK-----ASKSH--DDSFGELYLRVSMSGQC----HITSLWSALMNDC 1125
IK V IL S+ H + S E+ L V++ G+ T+ W+ +++ C
Sbjct: 635 RIKSVSILPSGILSEAVPFGSQEHYRERSSTEIALEVTIHGKLKSTRQKTNAWNVVLDLC 694
Query: 1126 HQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTL 1185
++ I+W RS P I++ +GI+A L+S +S K + H++++ +
Sbjct: 695 GSVLHKINWLRSMPSGIQAIANVFGIEAAHNCIYHRLKSILSMFDKTVYDHHVIVITELM 754
Query: 1186 SATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGW 1245
+ +G +GLNA G +S+P Q+ F + AA G D+L G++ A+ W
Sbjct: 755 THSGNVIGLNAAGFREISNSLHISAPITQSLFQSSIKHIQTAALRGKCDDLSGTLAAICW 814
Query: 1246 GKVPSVGTGGHFDIIY 1261
GK+ VGTG FDI++
Sbjct: 815 GKLAPVGTGAKFDILW 830
>gi|222622188|gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
Length = 2017
Score = 275 bits (702), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 270/986 (27%), Positives = 428/986 (43%), Gaps = 105/986 (10%)
Query: 7 EEGLEVPSGILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAK 64
+ + V G + I L +ST+ E S+ + + S++ NP LGLP T +C SCGA
Sbjct: 5 QSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGAS 64
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP ++++ ++LN +C KC ++K + K C
Sbjct: 65 ENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSC 124
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEE 184
YC PA LS K++ KTA E K + + W F+ D
Sbjct: 125 YYCRDLPA---------LSLKEI--KTADGAFRLELKMPPRKFMTEGSWNFL--DKYGFH 171
Query: 185 NSVKPNRKVLSCKQVSYLLKDVDPSIREEFI----LSKDAPFLKCFPVTPNNHRVTEVPH 240
+ + + L ++ +LK + + + +++ +K PV PN +P
Sbjct: 172 HGGTSHCRTLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPN---CLYIPE 228
Query: 241 AFSHEKKLFFDNWTRHLKKMVD--------YRGRDIELSHLVQDC---LKISK-LHLDKS 288
+ + +D LKK++ G SH V+ C L I++ +HL +
Sbjct: 229 FTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGT 288
Query: 289 SRKDSAEVRQ-KKNIDISNSSGLRWI---KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIP 344
+R ++ + D S S +W+ + + + K + R V+TGDP I + IG+P
Sbjct: 289 TRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLP 348
Query: 345 CQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDA-----LELG 399
+VA+R+ E++ N RL +++KG R G + + L++G
Sbjct: 349 SEVAKRITFEEQVTDINLNRLQ-----EIVDKGLCLTYRDGQATYAITVGSKGHTTLKVG 403
Query: 400 DIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLH 459
I R + DGD+V +NRPPS H HSL A V V V INPL C+PF DFDGDC+H
Sbjct: 404 QTISRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHE-DHTVKINPLICAPFAADFDGDCVH 462
Query: 460 GYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ 519
Y PQ++ A+ E EL +++KQL + SG+ L L DSL A M +LS Q
Sbjct: 463 IYYPQSLAAKAEALELFSVEKQLTSSHSGKVNLQLVSDSLLALK-HMSSRTMLSKEAANQ 521
Query: 520 LQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSS 579
L M PD I W+ Q+ LP V S + + S
Sbjct: 522 LAMLVTCSL--PDPAVIKSKPYWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKES 579
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ ++ L + + L FL Q +L E + + G +VSL D + K+L
Sbjct: 580 VQTSFSDLVYSTLSVKGPGEALQFLNVLQPLLMELILLDGFSVSLQDFNVP------KVL 633
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
L EAQ Q L+++ Q A +Q
Sbjct: 634 -------LEEAQKNIEKQSLILE---------------------------QSRFAENQVV 659
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ--HSLAPLSF 757
+ DI+ + K + L + S ++ K+VQ +GLQ S
Sbjct: 660 EMRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSR 719
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R + N+ A ++Y +V +S+ GLNP E +H++++R++ +
Sbjct: 720 RLVEDCYYTFVNKHPAVREEHSPEAY---GLVRSSYFHGLNPYEELVHAISTREAIVRSS 776
Query: 818 ADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG-DQPVG 874
L PGTL + LM +RD+ YDGTVRN I+Q +Y + IG +PVG
Sbjct: 777 RGLTEPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVG 836
Query: 875 SLSACAISEAAYSA-LDQPISLLETSPLLNLKNVLECGSKKSN--ADQTMSLFLSNKLGK 931
L+A AIS AY A LD S + +K +L+ S+ N D+ + LFL++
Sbjct: 837 VLAATAISNPAYKAVLD--ASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCA 894
Query: 932 RRHGFEYGALEVKNHLECLMLSDIVS 957
++ E A+ V+ L + L D +
Sbjct: 895 KKFCKEKAAIAVQGCLRRITLEDCAT 920
Score = 92.4 bits (228), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Query: 1067 LLKTVVKGFREIKKVDILW---------KDKQKASKSHDDSFGELYLRVSMSGQCHITSL 1117
LL T++KG I++ I+W K+ QKASK + ++ HI
Sbjct: 1096 LLNTIIKGDPRIQEAKIVWVGSDATSWVKNTQKASKGEPAVEIIVEEEEAL----HIGDA 1151
Query: 1118 WSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEH 1177
W M+ C ++++ID RS P I+ GI + L + + K++L +H
Sbjct: 1152 WRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVRMVAKDVLKDH 1211
Query: 1178 LLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQ 1237
L++VAN+++ TG G N G + V PF ++ P F KAA+ D+L
Sbjct: 1212 LVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKAAEKCHSDSLG 1271
Query: 1238 GSVDALGWGKVPSVGTGGHFDIIYS 1262
V + WGK + GTG F I+++
Sbjct: 1272 CVVSSCSWGKHAASGTGSSFQILWN 1296
Score = 45.8 bits (107), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 1343 ALKKILHKYSIGQRLSEKDKTTVIR-ALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFS 1401
+++KI + +LS +D+ + L HP + K+ E I V H Q+SRC
Sbjct: 1846 SIRKIFRESIDSIKLSPEDEKFIKENVLEHHPEKQSKVSGEIDHIMVDKHQVFQDSRCLF 1905
Query: 1402 LVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437
+V DG+ DFSY KC+ + PE + + K+
Sbjct: 1906 VVSSDGTRSDFSYLKCMENFVRKTYPEHGDSFCKKY 1941
>gi|115460018|ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group]
gi|113565180|dbj|BAF15523.1| Os04g0572600 [Oryza sativa Japonica Group]
Length = 449
Score = 273 bits (698), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/448 (34%), Positives = 254/448 (56%), Gaps = 24/448 (5%)
Query: 987 MKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKEC--NDAFCVTVM 1044
MK L+ I+ + Q R +L ++P + ISN CS N EC N CVT M
Sbjct: 1 MKIKRLRLEFIVREIIDQYNTLRKQLNNAIPSVSISNSKCSVGN---ECVKNQTCCVT-M 56
Query: 1045 IVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYL 1104
+V+ + L+ I+ V+P +L T++KGF E K V + + +D+ EL L
Sbjct: 57 VVQVEINSMSQLDVIKERVIPSILATLLKGFLEFKNVKV---------QCQEDN--ELVL 105
Query: 1105 RVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLES 1164
+V MS C W+ L N C IM++IDW RS P+ + +YGID+ +FF+ ++ S
Sbjct: 106 KVGMSEHCKSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESVRS 165
Query: 1165 AISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASF 1224
G+NI +HLL+VA+ LS +G+F GL+++GL QR S+SSPF +A FS P SF
Sbjct: 166 TTDAIGRNIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSF 225
Query: 1225 IKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP-VS 1283
I AAK +VDNL G++DA+ WGK P G+ G F I+YSG+ + +Y+ L P V
Sbjct: 226 INAAKRDSVDNLSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQ 285
Query: 1284 SKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETIS---RGVLRKSWTYNDVLRL 1340
+ + + + + ++K + +G ++ IS + + K + +++ +
Sbjct: 286 ALEKNVMDTYRKR---TEKTSKRRSALNSEGNATINGGAISFNQKFLNAKVGIWENIIDM 342
Query: 1341 SNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCF 1400
+L+ +L +Y++ + ++E+DK+ ++ AL FHPR +K+G+ +I++ +P H +SRCF
Sbjct: 343 RTSLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPGHPSSRCF 402
Query: 1401 SLVREDGSIEDFSYHKCVIGALEIIAPE 1428
++R D + DFSY+KCV+GA I+PE
Sbjct: 403 IVLRNDDTTADFSYNKCVLGAANSISPE 430
>gi|68300821|gb|AAY89351.1| RNA polymerase IV largest subunit [Chara hispida]
Length = 1144
Score = 246 bits (628), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 284/1093 (25%), Positives = 461/1093 (42%), Gaps = 181/1093 (16%)
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGA----GSSRKEQ--P 121
CEGHFG+++ + HP+F+ + +LN IC C ++R++ ++ A +SRK+
Sbjct: 1 GCEGHFGYLELAVPLYHPHFIKRVVWVLNKICFSCSSLRRDAKECAPRQESTSRKDAIVQ 60
Query: 122 RVCKYC-VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDA 180
C+ C V N A+ F + D K I +++ +K + K + L +W + +
Sbjct: 61 YGCELCRVSNKAELITVSDFVDKTAD-GKKVRIGIKVKKKGAAKGQPLNKHFWVNLMAEG 119
Query: 181 QQ---EENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP---FLKCFPVTPNNHR 234
+ VK N LS ++ L + S R+ +L P L PV P R
Sbjct: 120 DHIAHTDGQVK-NELFLSPEEAKQKLSKI--SKRDCRVLGVSDPQWMILTVLPVPPVAVR 176
Query: 235 VTEVPHAFSHEKKLFFDNWTRHLKKMVD----YRGRDIE-----LSHLVQDCLKISKLHL 285
F ++ D T LK+++ R +E L +LV D L HL
Sbjct: 177 PFGFGDQFGAKQ---VDLLTSKLKEIISQNRLVRRNKVEPNIVKLQNLVLDYLGSQLNHL 233
Query: 286 -------DKSSRKDSAEVRQKKNIDISNSSGLRW----IKDVVLGKRNDDCFRMVVTGDP 334
D R S R + + + + L+ +++ + GKR+++ R V+ D
Sbjct: 234 SGKVVHDDDGWRVLSLGGRLRSQMVDTTTDELKHRRGRMRENISGKRSNNSARSVIVPDA 293
Query: 335 NIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRR-I 393
+I L+E+G+P +A L + E + WN E + C+ + K + + +R+ +
Sbjct: 294 SIGLEEVGVPRSMAGNLFVEESVTQWNLESMR-CLQAKGYLKDRFFRAGEAMAMRLEKEY 352
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
+L +GD++ R L+DGDI+++NR PS+H HS+IA ++P +S INP+ C PF+ DF
Sbjct: 353 TSLTIGDVVERKLSDGDIIVLNRQPSLHRHSVIAFRACIVP-TSAFGINPVVCGPFNADF 411
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGD ++ ++P ++ A+ E +L+ L KQ+++ Q GR ++SL QDSL AAH+L + V L+
Sbjct: 412 DGDEMNLFVPTSLEAQAEARQLLLLRKQVVSSQDGRAIVSLRQDSLLAAHMLTSEYVFLN 471
Query: 514 HLQMQQLQMFCPHRF-------------LSPDIFKI--------SKDSVWSGKQLFSMLL 552
++ QL M C F P I K +W+G+Q+F M L
Sbjct: 472 RQEVSQLAM-CADEFGQPVGVDSRSTILPEPAILKWPAXKHQNGESSGLWTGQQVFGMSL 530
Query: 553 PPDFEYTFPSKD-VYISGGKLISAEG--SSWLRDYEGNLFQYLIKRYRDK---------- 599
FEY + +D V I G+L+ +EG S+WLR L L + +
Sbjct: 531 FKGFEYDWLDEDGVLIRDGELLVSEGLSSAWLRSGREGLTHALWELGEESFCCSSGRNVF 590
Query: 600 ----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL-REAQDTC 654
++ L Q + E+L ++G +V L D + H + + EI L REA
Sbjct: 591 LESFAVNHLNKIQAIANEFLQLKGFSVGLQDYWSEKHEQLKSKAL-EIHEQLKREAAH-- 647
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQR----------------SAALSQA 698
++ L V + + S + G + E+Q + +
Sbjct: 648 EWKLLHVKQELEGGKEPVNDGSRQQWGGRMTTCEQQEVRQTLCRWDYNDVQEDPGGVCSS 707
Query: 699 SVDAFKHVFWDI-QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ----HSLA 753
+ A K I L + D+ ++ M AGSKG+ + + S+ LGLQ SL
Sbjct: 708 LLKALKSGVERIGSELMAESAKSDHPVVKMIHAGSKGSPVNFTKQSVYLGLQLFNGKSLI 767
Query: 754 PLSFR----FPHELSCAAWNRLRAGDNTECAKSYIPSAV--------------VENSFLT 795
P R H +R + + +E++FL
Sbjct: 768 P-GMRNGRITAHSRPTGQQDRDLSSERPSGVGRGGGGGSGGGRSMSSSRGCESLEDAFLR 826
Query: 796 G----------------LNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCT 837
G L P + F H + R ++ PG L R+L + DL
Sbjct: 827 GGYWEDRGVIDRGLVEGLTPSQFFSHFIAERYGLLQKTGEIKDPGVLQRQLSRGLEDLTL 886
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS------ACAISEAAYSALDQ 891
AYDGTVR +G IVQF Y EG S G +PVG ++ A AL Q
Sbjct: 887 AYDGTVR--FGPHIVQFEY--EGLSLKKTSGGSKPVGYCMRELVDFGDSVGAVAAQALGQ 942
Query: 892 PI----------SLLETSPLL-NLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEY-- 938
PI + L PL+ L+ VL K N+ + FL +L K G
Sbjct: 943 PIQQLVLDAPHHAGLVGGPLIKQLQAVLNLSKNKPNSTKKSQFFL--RLAKPTEGEVQLT 1000
Query: 939 GALEVKNHLECLMLSDIVSTSMIIYS----------PQTGSMKHFSPWICHFHVRKEIMK 988
A EV L + LS ++ + + + P G +H P+ HF + KE +
Sbjct: 1001 RACEVLGALYPVPLSKVLEETYVSFEEEPYEIRTDRPDVG--RHAFPFAIHFKLSKEALC 1058
Query: 989 RTGLKEHSIIDSL 1001
GL ++ L
Sbjct: 1059 TNGLDGPEVLSRL 1071
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 239 bits (610), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 253/928 (27%), Positives = 397/928 (42%), Gaps = 155/928 (16%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNEC 58
+E + IL GI + + TE K SV EI A + + RLG P +C
Sbjct: 1 MEESAKILGGIKFSVWSPTEVRKFSVAEITAPETYDEDGMPVQGGLMDNRLGTLEPGQKC 60
Query: 59 SSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE---------- 108
++CG K C GHFG I+ +LH F+ DI KLL C C I+ E
Sbjct: 61 ATCGNTSAK-CPGHFGHIELAEPVLHIAFVDDIHKLLLISCRSCNRIKLEPEELTHYKSI 119
Query: 109 RQKGAGSS-------------RKEQPRVCKYCVRNPAQW-YPRMRFKLSSKDLSGKTAII 154
R A + R ++ +VC +C + + + + D +
Sbjct: 120 RDTKAAYAVITLENIKDEIIERAKKVKVCPHCGKEQYDLIFTKPTIFVEKTDAGENRLLP 179
Query: 155 VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REE 213
+ I E+LS +PDD + +D + + +P VL V + V PSI E
Sbjct: 180 ITIRERLSH----IPDDDLTLLGYDPR----TARPEWFVLQVLPVPPVT--VRPSIILET 229
Query: 214 FILSKDAPFLKCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKM 260
I S+D K + N R+ E A + +FDN + +
Sbjct: 230 GIRSEDDLTHKLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQA 289
Query: 261 VDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK 320
GR L L Q R E R + ++ GK
Sbjct: 290 HHRSGR--PLKTLTQ--------------RLKGKEGRFRGSLS---------------GK 318
Query: 321 RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGEL 379
R D R V++ DPN+ + ++G+P VA++L I E ++ WN ERL + ++ G
Sbjct: 319 RVDFSSRTVISPDPNLTIADVGVPTDVAKKLTIPETVSQWNVERLKELVMNGPNTYPGAN 378
Query: 380 YVCRKGGLVRIRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G V+IR D+L G I+ R L DGDIV+ NR PS+H S++A +V
Sbjct: 379 YIIRPDG-VKIRLDYVTDRKAIADSLAPGYIVERHLADGDIVIFNRQPSLHRMSIMAHSV 437
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP + ++P C P++ DFDGD ++ ++PQ+ AR E T L+ + QLI+ + G
Sbjct: 438 KVLPYRTF-RLHPAVCPPYNADFDGDEMNLHVPQSEEARAEATLLMRVQDQLISPRYGGP 496
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS--VWSGKQLF 548
++ +D +T A +L D L+ + L M + P+ I+KD ++SG+QLF
Sbjct: 497 IIGGIRDFITGAFMLTRDGTTLTKDEFANLAMIGGYEGPLPEP-AITKDGQRLYSGRQLF 555
Query: 549 SMLLPPDFEYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRY 596
S+ LP DF + S KDV I G+LIS + +S + ++ + K Y
Sbjct: 556 SLFLPKDFNFIITSKWNKAAKGEGKDVVIKNGELISGVIDKASIGAEEPDSVLHRIAKDY 615
Query: 597 -RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+ FL + +L +++ RG T SDL+L+ +R+ + D I Q T
Sbjct: 616 GTNAARKFLDSILTMLKTYITHRGFTYGYSDLWLSPE--TRQEINDII-------QKTYE 666
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
++ + + + TR L E AL V+ A
Sbjct: 667 KVYELIQQYNDGTLPL-----TRGLAAEE---------ALELYVVNELSRARDRAGRTAD 712
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGD 775
+ +NS + M G++G+ L + Q + LG Q S+ R A + + D
Sbjct: 713 RAFPDENSGVIMASTGARGSTLNIGQMTAALG-QQSIR--GKRIQKGYHNRALSHFKPND 769
Query: 776 NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFM 832
AK ++ S ++ GL+PLE F H++ R+ D A G + RRL+ +
Sbjct: 770 ANPDAKGFVKS-----NYRDGLSPLEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINAL 823
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
L YD TVR+ +GN IVQ+ Y +G
Sbjct: 824 EHLKIEYDQTVRDPHGN-IVQYLYGEDG 850
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 1070 TVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIM 1129
T VKG +I++V I+ +D+ E ++ + S + ++
Sbjct: 1098 TRVKGVPDIERVTIVKQDE------------EWVIQTAGSNLAKVVAV------------ 1133
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D +D TR +N+ GI+A + + + + + G + H+++VA+ +++ G
Sbjct: 1134 DGVDLTRVTTNNVYEIWQTLGIEAARTALIKEITNTLEEQGLEVDTRHIMLVADLMTSKG 1193
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ G+A + +S +A F + +A+ G ++ L+G + + G
Sbjct: 1194 YLQQIGRHGIA-----GTKTSVLARAAFEITVPTIARASLEGQIETLKGVTENVIVGATV 1248
Query: 1250 SVGTG 1254
VGTG
Sbjct: 1249 PVGTG 1253
>gi|224057314|ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit [Populus trichocarpa]
Length = 842
Score = 230 bits (586), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 206/718 (28%), Positives = 326/718 (45%), Gaps = 123/718 (17%)
Query: 287 KSSRKDSAEVRQKKNIDISNSSGLRWIKDV-VLGKRNDDCF--RMVVTGDPNIKLKEIGI 343
K+SR +VR D S SS W++ + L R F R V+TGD K+ ++GI
Sbjct: 204 KTSR--DVDVRYGVKKDSSESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYTKVNQVGI 261
Query: 344 PCQVAERLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALE 397
P ++A+R+ ER++ N L +C+++R + Y R+G + L
Sbjct: 262 PYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYR--DGSSTYSLREGS----KGHTFLR 315
Query: 398 LGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDC 457
G +++R + DGD+V INRPP+ H HSL AL+V V V INPL C P DFDGDC
Sbjct: 316 PGQVVHRRIIDGDVVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGPLSADFDGDC 374
Query: 458 LHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQM 517
+H + PQ++ A+ E+ EL +++KQL++ SG L L DSL + ++ + + L
Sbjct: 375 VHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMIFK-ACFLDKSAA 433
Query: 518 QQLQMFCPHRFLSPDIFKIS-KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAE 576
QQL MF P + K++ W+ Q+ M LP F + + I+ ++ +
Sbjct: 434 QQLAMFVSPDLPQPALLKVNCIRPYWTAHQILQMALPTCFNCS--GERFLINNSNVLKVD 491
Query: 577 GSSWLRDYEGNLF-QYLIKRYRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS 631
+ RD ++ + LI + +K VL F A Q +L E L G +VSL D + S
Sbjct: 492 ---FNRDVVASMINEILISIFFEKGSGAVLKFFNALQPLLMENLFSEGFSVSLKDFSI-S 547
Query: 632 HSCSRKI-----LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLS 686
+ + I ++ + LR + +L V++H+
Sbjct: 548 QAVKQSIQESFKVISPLLCNLRSTYN--ELVELQVENHIQ-------------------- 585
Query: 687 YEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCL 746
D++ ++ ++L + + S G + KLVQ L
Sbjct: 586 ----------------------DVKTPVLEFILTSSALGYLIDSKSDGAVAKLVQQIGFL 623
Query: 747 GLQHS----------LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA---VVENSF 793
GLQ S + L+ F + N PSA ++++SF
Sbjct: 624 GLQVSDRGKLYSKTLVEDLASHFQSKYPTNLLN--------------YPSAQYGLIQSSF 669
Query: 794 LTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQI 851
GL+ E HS+++R+ + L PGTL + LM +RD+ YDGTVRN N I
Sbjct: 670 FHGLDAYEEMAHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSI 729
Query: 852 VQFSYNIE-GTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLN-----LK 905
+Q Y ++ G + + +PVG L+A A+S AY A +L+++P N +K
Sbjct: 730 IQSEYGVKVGAESQSLFPAGEPVGVLAATAMSNPAYKA------VLDSTPSSNSSWDMMK 783
Query: 906 NVLEC--GSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMI 961
+L C G K AD+ + L+ + R H E A VKNHLE + L D+ MI
Sbjct: 784 EILLCKVGFKNDQADRRVILYFNYCGCGREHCQEKAAFLVKNHLEKVSLKDVAKCFMI 841
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 234/898 (26%), Positives = 396/898 (44%), Gaps = 149/898 (16%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
R+G + C +CG + C GHFG ++ + + F++ + K+L S+C C +
Sbjct: 26 RMGTIDHHLSCLTCGG-NATECPGHFGHVRI-HPVFNVLFINTVVKVLQSVCIHCGKLLA 83
Query: 108 ERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK 167
++ S + + K+ R R RFK DL K I+E K +++N++
Sbjct: 84 DK------SSLQFKKASKFVNR-------RKRFK-EMIDLCRKDKCIIETGNKENEQNQE 129
Query: 168 LPDDY--------WGFIP---------FDAQQEENSVKPNRKV----LSCKQVSYLLKDV 206
D G P F +++ S + +++ L+ ++ + K +
Sbjct: 130 ANIDPTFQPRNGCGGLQPKISRDGLKIFAEYKKDTSAEAKQELTKQELTAERALQIFKRI 189
Query: 207 DPSIREEFILSKDAP-----FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV 261
E KD L C P+ P R + V H + + D+ T L ++
Sbjct: 190 PAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPS-VHHGSADRSE---DDLTHKLADII 245
Query: 262 DYRG--RDIELS----HLVQDCLKISKLHLDKSSRKDSAEV--------RQKKNIDISNS 307
+ E S H +++ +++ + H + V R K+I
Sbjct: 246 KANAAIQKNEKSGTPLHQMEEMVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSIRQRLK 305
Query: 308 SGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV 367
++ ++GKR D R V+T DPNI + ++G+P VA + + E + +N+ERL+
Sbjct: 306 GKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVPEIVTPFNFERLNE 365
Query: 368 CIS-FRLLEKGELYVCRKGGLVRIRRID------------ALELGDIIYRPLTDGDIVLI 414
++ L G YV R+ G RID LE G + R L DGD++L
Sbjct: 366 LVTNGPLTYPGAKYVIREDGT----RIDLRFASGKANDQIQLEYGYKVERHLQDGDVILF 421
Query: 415 NRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
NR PS+H S++ +KV+P S+ +N +P++ DFDGD ++ ++PQ++ + EL E
Sbjct: 422 NRQPSLHKMSMMGHRIKVMPYSTF-RMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELLE 480
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS---- 530
L+ + + +I QS R +++L QD+L AA L V ++ + L M C +
Sbjct: 481 LMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIA----KDLMMNCLMHLIDFDGK 536
Query: 531 ---PDIFKISKDSVWSGKQLFSMLLPP------------------DFEYTFPSKD--VYI 567
P I K +W+GKQLF+ LLP ++ P D V I
Sbjct: 537 LPVPAILK--PKPLWTGKQLFTFLLPKVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLI 594
Query: 568 SGGKLISAE-GSSWLRDYEGNLFQYLI-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLS 625
G+L+S L G+L ++ ++ ++ FL Q V+ WL RG ++ +
Sbjct: 595 DRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLINRGFSIGIG 654
Query: 626 DLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
D + + K M++I +R+A+ +L+V + A E+ R++Q
Sbjct: 655 D------TIADKATMEQIEETIRKAEKDV---KLIVKDAQEGKLRA---EAGRTIQ---Q 699
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
S+E Q + L++A DA N A K DN++ +M AGSKG+ + + Q C
Sbjct: 700 SFENQVNKVLNKAREDA--------GNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIAC 751
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
+G Q+ R P+ D+ ++ + V NS+L GL P E F H
Sbjct: 752 VGQQNVEGK---RIPYGFRNRTLPHFAQDDHGPESRGF-----VANSYLRGLTPQEFFFH 803
Query: 806 SVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ D A G + RRL+ M D+ YDGTVR+A GN +VQF Y +G
Sbjct: 804 TMGGRE-GLIDTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGN-VVQFLYGEDG 859
>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1590
Score = 223 bits (569), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 227/876 (25%), Positives = 384/876 (43%), Gaps = 146/876 (16%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFG ++ + + F++ + K+L S+C C + ++ S + + K+
Sbjct: 2 CPGHFGHVRI-HPVFNVLFINTVVKVLQSVCIHCGKLLADK------SSLQFKKASKFVN 54
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------WGFIP--- 177
R R RFK DL K I+E K +++N++ D G P
Sbjct: 55 R-------RKRFK-EMIDLCRKDKCIIETGNKENEQNQEANIDPTFQPRNGCGGLQPKIS 106
Query: 178 ------FDAQQEENSVKPNRKV----LSCKQVSYLLKDVDPSIREEFILSKDAP-----F 222
F +++ S + +++ L+ ++ + K + E KD
Sbjct: 107 RDGLKIFAEYKKDTSAEAKQELTKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMI 166
Query: 223 LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQD 276
L C P+ P R + V H + + D+ T L ++ + E S H +++
Sbjct: 167 LTCLPIPPPQVRPS-VHHGSADRSE---DDLTHKLADIIKANAAIQKNEKSGTPLHQMEE 222
Query: 277 CLKISKLHLDKSSRKDSAEV--------RQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
+++ + H + V R K+I ++ ++GKR D R
Sbjct: 223 MVRMLQYHCATYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSART 282
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLLEKGELYVCRKGGL 387
V+T DPNI + ++G+P VA + + E + +N+ERL+ ++ L G YV R+ G
Sbjct: 283 VITADPNIDIDQVGVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYPGAKYVIREDGT 342
Query: 388 VRIRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
RID LE G + R L DGD++L NR PS+H S++ +KV+P
Sbjct: 343 ----RIDLRFASGKANDQIQLEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPY 398
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N +P++ DFDGD ++ ++PQ++ + EL EL + + +I QS R +++L
Sbjct: 399 STF-RMNLSVTTPYNADFDGDEMNLHVPQSLQTKAELLELTMVPRNIITPQSNRPVIALV 457
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-------PDIFKISKDSVWSGKQLF 548
QD+L AA L V ++ + L M C + P I K +W+GKQLF
Sbjct: 458 QDTLLAASKLTRRDVFIA----KDLMMNCLMHLIDFDGKLPVPAILK--PKPLWTGKQLF 511
Query: 549 SMLLPP------------------DFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGN 587
+ LLP ++ P D V I G+L+S L G+
Sbjct: 512 TFLLPKVNLENTSSTHEDLTDKKDHLDHDIPEFDTKVLIDRGELVSGVLDKKSLGSSHGS 571
Query: 588 LFQYLI-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ ++ ++ FL Q V+ WL RG ++ + D + + K M++I
Sbjct: 572 LIHIIVNEKGVNEGKKFLGQCQRVINHWLINRGFSIGIGD------TIADKATMEQIEET 625
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+R+A+ +L+V + A E+ R++Q S+E Q + L++A DA
Sbjct: 626 IRKAEKDV---KLIVKDAQEGKLRA---EAGRTIQQ---SFENQVNKVLNKAREDA---- 672
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
N A K DN++ +M AGSKG+ + + Q C+G Q+ R P+
Sbjct: 673 ----GNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQNVEGK---RIPYGFRNR 725
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTL 824
D+ ++ + V NS+L GL P E F H++ R+ G +
Sbjct: 726 TLPHFAQDDHGPESRGF-----VANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSETGYI 780
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ M D+ YDGTVR+A GN +VQF Y +G
Sbjct: 781 QRRLIKAMEDIMVKYDGTVRDAQGN-VVQFLYGEDG 815
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 223 bits (567), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 169/590 (28%), Positives = 291/590 (49%), Gaps = 54/590 (9%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPNI++ E+G+P ++A +L ++ER+ WN E++ + + G
Sbjct: 315 GKRVDFSARTVISPDPNIRINEVGVPLEIAMQLTVAERVTPWNLEKMRTLVRNGSDKYPG 374
Query: 378 ELYVCRKGG-LVRIRRI-------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ R G VR++ + ALE G ++ R L DGDIVL NR PS+H S++A
Sbjct: 375 ARYIIRPDGKRVRLKFVANLEELATALEPGYVVERHLQDGDIVLFNRQPSLHRMSIMAHY 434
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+VLP ++ +NP C+P++ DFDGD ++ ++PQ+ A+ E EL+ ++ +I+ + G
Sbjct: 435 VRVLPYKTL-RLNPAVCTPYNADFDGDEMNLHVPQSEEAQTEARELLVVENNIISPRYGA 493
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFS 549
++ + +D LT+ +LL D L+ ++ L +R P + +W+GKQ+FS
Sbjct: 494 PIIGVIRDFLTSLYLLTRDETKLTKSELAMLLAAIKYRGPIPPPAVKDPEPMWTGKQVFS 553
Query: 550 MLLPPDFEY----TFPSKDVYISGGKLISA---EGSSWLRDYEGNLFQYLIKRY-RDKVL 601
+LLP DF + +F + +V + G+LIS +GS + + ++ L + Y D
Sbjct: 554 LLLPKDFNHVTKSSFTNTEVVVKNGQLISGVIDKGSVGV-EKANSILHRLARDYGSDVAR 612
Query: 602 DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMV 661
FL + ++ ++G + ++ DLY+ S + +IF + F +L+
Sbjct: 613 QFLDNVVRLANTFIELKGFSFAVDDLYVPDQIHSD---IQQIF-----KKSETEFSKLLA 664
Query: 662 DSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD 721
+ E + E ++E LS+A A K + + S++
Sbjct: 665 QYQTG------EVEIPPGMTAEQ-AFEADVLKILSEARDSAGKLIRARV--------SQN 709
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
+S M K G++G +L L Q +G Q S+ + ++ + D + A+
Sbjct: 710 SSAFIMAKTGARGTMLNLDQMIAVVG-QQSVRRERVHRGYRKRVLSF--FKQDDLSPRAR 766
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTA 838
+ V NSF++GL+PLE F H+V RD D A G + RRL+ + L
Sbjct: 767 GF-----VYNSFVSGLDPLEFFFHAVGGRD-GLVDTAVRTQQSGYMQRRLINALEALYID 820
Query: 839 YDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSA 888
YDGTVR A +I+QF+Y +G + G S ++ +AYS
Sbjct: 821 YDGTVRTADEGRIIQFAYGEDGVDPAKSDHGKAVTVSNIVNSVLASAYSG 870
Score = 57.0 bits (136), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 33/185 (17%)
Query: 1072 VKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDM 1131
VKG R IKK + +K+K E +R S + ++M++
Sbjct: 1089 VKGIRRIKKATV-FKEKD-----------EYVIRTEGS--------------NLREVMEV 1122
Query: 1132 --IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+DW R ++I +GI+A + ++ + D G ++ HLL++A+ ++ +G
Sbjct: 1123 PGVDWRRIKTNDIYEIAEVFGIEAARNAIVEEAKAVLEDQGLDVDIRHLLLLADMMTVSG 1182
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ G+ + SS +A + + ++AA G VD+L+G+V+ + G+
Sbjct: 1183 SVKQIGRHGVVKLK-----SSVLARAAYEISVQTLLEAAARGEVDSLKGNVERILIGREI 1237
Query: 1250 SVGTG 1254
VGTG
Sbjct: 1238 QVGTG 1242
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAV-----------SEVTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + K+SV EI + + V +PRLG P C +CG
Sbjct: 7 VAGIRFGILSPDLIRKMSVAEIISPDTYDEDGLPIPTSVMDPRLGTLEPGQRCKTCG-NT 65
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG I+ P ++H F I +LL S C C I
Sbjct: 66 YLGCPGHFGRIELPVPVIHVGFAKTIYELLKSTCRSCGRI 105
>gi|386875147|ref|ZP_10117336.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
gi|386807026|gb|EIJ66456.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
Length = 1263
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 241/961 (25%), Positives = 402/961 (41%), Gaps = 161/961 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ GI + + TE K SV EI A + + RLG P +C +CG
Sbjct: 9 IDGIQFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI----------RKERQKGAGS 115
+ C GHFG I+ ILH F+ +I KLL S C C + +K + K A
Sbjct: 69 AR-CPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARLKVPQEDLDAFKKIKDKHAAY 127
Query: 116 SRKEQPRV-------------CKYCVRNPAQW-YPRMRFKLSSKDLSGKTAIIVEIDEKL 161
+ Q R+ C +C + + + + + ++ + + I E+
Sbjct: 128 TVISQKRIPEQIIEKAKKAKECPHCGKTQYELVFTKPTIFVEKTEIGEHRLLPITIRERF 187
Query: 162 SKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REEFILSKDA 220
S+ + D+ + +D + + +P +L V + V PSI E I S+D
Sbjct: 188 SQ----ILDEDLEILSYDPR----TARPEWFILQALPVPPVT--VRPSIILETGIRSEDD 237
Query: 221 PFLKCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGRD 267
K + N R+ E A + +FDN + + GR
Sbjct: 238 LTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHSTTYFDNEVSGIPQAHHRSGR- 296
Query: 268 IELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
L L Q R E R + ++ GKR D R
Sbjct: 297 -PLKTLTQ--------------RLKGKEGRFRGSLS---------------GKRVDFSSR 326
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGG 386
V++ DPN+ L E+G+P QVA +L I E + WN ER+ + I+ G Y+ R G
Sbjct: 327 TVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDG 386
Query: 387 L------VRIRRI--DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
+ V R I ++LE+G +I R L DGDIV+ NR PS+H S++A V+VLP
Sbjct: 387 VKIRLDFVEDRSIIAESLEIGYLIERHLADGDIVMFNRQPSLHQMSIMAHYVRVLP-GKT 445
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
++P C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G ++ +D
Sbjct: 446 FRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGGPIIGALRDF 505
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFE 557
+T A+LL +D LS + L M ++ P +KD ++GKQLFS+ LP DF
Sbjct: 506 VTGAYLLTKDGTTLSIQEFSNLAMLGGYKDALPKPATKTKDGPAYTGKQLFSLFLPKDFN 565
Query: 558 YTF----------PSKDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRDKV-LDFL 604
Y P KDV I G+LIS + +S + ++ + K Y + + +FL
Sbjct: 566 YVLTSKWSKGTNGPPKDVVIKNGELISGVIDKTSIGAEEPESVLHRITKDYGNAIGKNFL 625
Query: 605 YAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH 664
+ ++ ++++ G + DL + ++ ++D+I Q T + + D +
Sbjct: 626 NSILIMVKQFITSYGFSYGFGDLEVPEK--EKQQILDDI-------QGTYDVISDLTDQY 676
Query: 665 ----MNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
+ K E+ + L + ++ + + S+D
Sbjct: 677 DKGTLKLTRGMKAEEALEAYIVNELGKARDKAGSTANDSLD------------------N 718
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECA 780
N+ M G++G+ L + Q + LG Q R A + D+ A
Sbjct: 719 SNAGKIMATTGARGSSLNVGQMAGALGQQSRRGN---RLHDGYQNRALTHFQEHDSNPDA 775
Query: 781 KSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCT 837
++ S ++ GL+ LE F H++ R+ D A G + RRL+ + +
Sbjct: 776 HGFVKS-----NYREGLSALEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINALEHIRL 829
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD--QPVGSLSACAISEAAYSALDQPISL 895
YDGTVR+ +G+ IVQF Y +G + G+ P + I+++ A I +
Sbjct: 830 EYDGTVRDPHGH-IVQFLYGEDGIDVQKSDHGEAFNPSRLAESQTITDSGKKATKDEIEV 888
Query: 896 L 896
L
Sbjct: 889 L 889
>gi|115480591|ref|NP_001063889.1| Os09g0555200 [Oryza sativa Japonica Group]
gi|113632122|dbj|BAF25803.1| Os09g0555200, partial [Oryza sativa Japonica Group]
Length = 318
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 186/302 (61%), Gaps = 7/302 (2%)
Query: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190
+IDW RS P+ + +YGID+ ++F+ +L S G+NI +HLL+VA+ LS +G+
Sbjct: 1 LIDWERSRPERVYDIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQ 60
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250
F GL+++GL QR S+SSPF +A FS P SFI AAK +VDNL G++DA+ WGK P
Sbjct: 61 FHGLSSQGLKQQRAWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPC 120
Query: 1251 VGTGGHFDIIYSGEGRTLSKPVDVYNLLSTP-VSSKQNEKLKVCKAQGLISDKCGAKFGD 1309
GT G F ++YSG+ + + ++Y+ L P V + + + K + ++K +
Sbjct: 121 AGTSGPFKVLYSGKSQKTKQNKNIYDFLHNPEVQALEKNFMDTYKQR---TEKPSKQRSA 177
Query: 1310 FAFKGLGNLDFETIS---RGVLRKSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI 1366
F+ KG ++ TIS + + K + +++ + L+ +L +Y++ + ++E+DK+ +I
Sbjct: 178 FSSKGNATINGGTISVNQKFLDSKVGIWENIIDMRTCLQNMLREYTLNEVVTEQDKSCLI 237
Query: 1367 RALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIA 1426
AL FHPR +K+G+ +I++ +P H NSRCF + R D + DFSY+KCV+GA I+
Sbjct: 238 EALKFHPRGYDKIGVGIREIKIGVNPGHPNSRCFIVQRSDDTSADFSYNKCVLGAANSIS 297
Query: 1427 PE 1428
PE
Sbjct: 298 PE 299
>gi|124028420|ref|YP_001013740.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
gi|123979114|gb|ABM81395.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
Length = 881
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 241/955 (25%), Positives = 399/955 (41%), Gaps = 173/955 (18%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEV------------TNPRLGLPNPTNECS 59
V I+ + GI + E K+SV I SE+ +PRLG P C
Sbjct: 3 VEEKIIREVKFGILSPDEIRKMSVTAI-VTSELYDEDGRPIPGGLMDPRLGAIAPGQICP 61
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKG------- 112
+CG D K C GHFG I+ ++H F I +L + C +C + +
Sbjct: 62 TCG-NDAKGCPGHFGRIELVRPVIHVGFAKYIYDVLRATCRQCGRLLLPENEAKRYLRLL 120
Query: 113 --------------AGSSRKEQPRV--CKYC--------VRNPAQWY---PRMRFKLSSK 145
+++ +V C +C P +Y P R +L+
Sbjct: 121 ERLEERWPLLAKMLVAVVKRKAAKVTECPHCGTRQYKIVFEKPYTFYEDRPEGRVQLNP- 179
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
+EI +L +++P+D + FD + S +P VL+ V +
Sbjct: 180 ---------LEIRSRL----ERVPNDDARLLGFDPE----SARPEWMVLTVLPVPPI--H 220
Query: 206 VDPSI-REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYR 264
V PSI E I ++D K + N R+ E+ + + + L ++WT + Y
Sbjct: 221 VRPSIVLETGIRAEDDLTHKLADIVRTNERLRELIDSGA-PQTLIDEHWTLLQYHVATYF 279
Query: 265 GRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDD 324
D EL + + + + R E R + N+ GKR D
Sbjct: 280 --DNELPRIPVARHRGGRPLKGLAQRLKGKEGRFRGNLS---------------GKRVDY 322
Query: 325 CFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKGELYVCR 383
R V++ DPNI + E+G+P ++A+ L + + WN E + ++ G YV
Sbjct: 323 SARTVISPDPNISINEVGVPIEIAKTLTVRTPVTPWNIEEMRRYVLNGPDRWPGANYVIT 382
Query: 384 KGGLV-------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
K G R R + LE G + R L DGDIVL NR PS+H S++A VKVLP
Sbjct: 383 KDGRKIDLRYADRKRIAEMLEPGWFVERHLRDGDIVLFNRQPSLHRMSIMAHIVKVLP-G 441
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+N L C P++ DFDGD ++ ++P+ A+ E EL+ + +++ + G ++ Q
Sbjct: 442 KTFRLNLLVCPPYNADFDGDEMNLHVPRTEEAQAEARELMLVQYHILSPRYGGPIIGGLQ 501
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDF 556
D ++ A+LL + LL+ + L +R P+ +S W+GKQL S+ LP DF
Sbjct: 502 DYISGAYLLTSKATLLTQEDVIDLLSAAGYRGEIPEPAILSPKKRWTGKQLVSLFLPKDF 561
Query: 557 EY---------TFPSKD--------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYR 597
+ F +D + I G+L++ + + + N+ +L+K Y
Sbjct: 562 NFKGKARVSAGIFMCEDEWCWNDSFIVIKKGELLTGVLDKKAIGAEQPENMMHWLVKEYG 621
Query: 598 DKVLDFLYAAQ-EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
++Y ++ ++ RG T+++ D+ L + ++I LREA++
Sbjct: 622 TDYARYVYDNMFKMFIRFIEKRGFTMTVDDVALPPEA------HEKIKVVLREAEERV-- 673
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
++L+ L + R+L+ L +DA ++++
Sbjct: 674 KELIEQYRQGKL----EPVPGRTLE-----------ETLELRILDALSDARKKVEDIVVN 718
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR------FPHELSCAAWNR 770
Y N++ M + G++GN L + Q + LG Q +R PH
Sbjct: 719 YLDPFNNVFIMARTGARGNELNITQMAALLGQQSVRGERIYRGYRDRFLPH--------- 769
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRR 827
+ GD A+ + V +SF GL P+E F H+ R+ D A G + RR
Sbjct: 770 FKPGDLGPAARGF-----VYHSFYLGLTPVEVFFHAAGGRE-GLVDTAVRTSQSGYMQRR 823
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
L+ ++DL YDGTVR YG +IVQFSY GE G P+ S A++
Sbjct: 824 LINALQDLRVEYDGTVRTPYG-EIVQFSY---------GEDGVDPMKSAHGKAVN 868
>gi|310831358|ref|YP_003970001.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386542|gb|ADO67402.1| putative DNA-directed RNA polymerase subunit Rpb1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 1493
Score = 221 bits (563), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 231/887 (26%), Positives = 390/887 (43%), Gaps = 149/887 (16%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
RLG +P C++CG + + C GHFG + P H FL+ + +L C KC I
Sbjct: 60 RLGTSDPYLNCNTCGL-NMENCPGHFGHHELPDYFFHFGFLNHLTTILQCTCLKCSNILI 118
Query: 108 ER--------QKGAGSSR----KEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV 155
E + G+ R KE+ + YC P + K KD SG I++
Sbjct: 119 ENVDEYYEKLKNKKGTHRLVEIKEKAKKASYCFNCGV---PVPKIKKEVKD-SGTIKIVL 174
Query: 156 EIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKV-----LSCKQVSYLLKDVDPSI 210
E + I D E+ + + K LS +QV +L+++ +
Sbjct: 175 EQE-----------------IASDEIDEKTGITTSVKQKVVEELSPRQVYEILRNMKDT- 216
Query: 211 REEFIL----SKDAP---FLKCFPVTPNNHRVT---EVPHAFSHEKKLFFD-----NWTR 255
+ F+L S+ P LK FPV P R T ++ A + E L N +
Sbjct: 217 -DVFLLGFNPSQSHPKDFILKNFPVPPVIIRPTSKIDMMTASTQEDSLTLKIADVINNSN 275
Query: 256 HLKKMVDYRGRDIE--------LSHLVQDCLKI----SKLHLDKSSRKDSAEVRQKKNID 303
LKK ++ D E + VQ L + ++L +S K R K+I
Sbjct: 276 RLKKQLNKDAIDREDISTAAYDSAANVQYNLAVYFDNESMNLPRSEFKTGG--RPTKSIS 333
Query: 304 ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
L +++ ++GKR D C R V+TGDP++ + EIGIP VA+ + E + N +
Sbjct: 334 ERLKGKLGRVRNNLMGKRQDYCARSVITGDPDVNIDEIGIPLAVAKNITFPEIVTPQNID 393
Query: 364 RLS-VCISFRLLEKGELYVCRKGGL----------VRIRR-IDALELGDIIYRPLTDGDI 411
LS + ++ G +V RK + +RIR+ LE G+I++R L DGD
Sbjct: 394 ELSKLVLNGNKKYPGANFVVRKSMVNGKQITQKIDLRIRKKTIKLEYGNIVHRHLQDGDP 453
Query: 412 VLINRPPSIHPHSLIALTVKVLPISSVVT--INPLCCSPFHGDFDGDCLHGYIPQAIGAR 469
+L NR PS+H S++ V+V + T +N +P+ DFDGD ++G+ PQ+I AR
Sbjct: 454 ILFNRQPSLHKPSMMGHKVQVAKTDGINTFRMNVSSTAPYGADFDGDEMNGFFPQSIQAR 513
Query: 470 VELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL 529
EL + + Q++ ++ ++ QD +T ++L+ D V LS + H L
Sbjct: 514 TELELIANVKNQIVGAKNSNPIIGCVQDGVTGSYLISLDDVRLSGRE--------AHWIL 565
Query: 530 S----PDIFKISKDSVWSGKQLFSMLLPPDF--------EYTFPSKDVYISGGKLISAEG 577
S D++KI K+ ++GK+++SM++P +YTF KD G L+
Sbjct: 566 SKAEKSDLYKIDKNKTYTGKEIYSMIIPDGINSFKKKGDKYTFQVKD----GKLLVGVLD 621
Query: 578 SSWLRDYEGNLFQYLI-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR 636
S + D +L ++ K+ + FL Q + +L RG TV D ++ +
Sbjct: 622 KSQVADKANSLTHFVYDKKGGEAARMFLDDTQRTVLNYLIYRGFTVGFGDCFIDKD--TD 679
Query: 637 KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
K L D + + + Q F +++ N + + +YE+ +A++
Sbjct: 680 KKLHDTVIKSVLDNQ----FDITSMENQGNVI--------------NYDTYEESLQSAMT 721
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAM-FKAGSKGNLLKLVQHSLCLGLQHSLAPL 755
+ F V ++ K+N+ M A +KG + + Q CLG Q +
Sbjct: 722 AVGGNTFGMVEKNL--------DKNNNFYIMSLGAKAKGKGVNIGQIISCLGQQTTEGK- 772
Query: 756 SFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS--S 813
R +++ + D+T A+ ++ S S+L G+ E F HSV+ R+ +
Sbjct: 773 --RVLKKVNGRTLSHFSYNDDTAFARGFVGS-----SYLEGMKGHEYFFHSVSGREGMIT 825
Query: 814 FSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + DL YDGTVRN+ G +++++Y G
Sbjct: 826 IALKTSSTGYIQRKLIKALEDLRVTYDGTVRNSNGT-LIEYNYGNTG 871
Score = 41.6 bits (96), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID R + ++I +GI+A +T L G + +HL+++A+ + TGE
Sbjct: 1325 IDQERIYINDIALVYNTFGIEATRNILITELRRTFLGGGADFNYQHLVVLADLMCYTGEI 1384
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ ++ G + P ++ F F+ A+ D ++ + + G+V
Sbjct: 1385 ISIDRHG-----TNKMELDPLARSSFERTMEHFVNASIYNQTDRIKATSSRIMTGRVIPG 1439
Query: 1252 GTG 1254
GTG
Sbjct: 1440 GTG 1442
>gi|68300841|gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
Length = 1127
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 228/865 (26%), Positives = 374/865 (43%), Gaps = 99/865 (11%)
Query: 452 DFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVL 511
DFDGDC+H + PQ++ A+ E+ EL A+ KQL++ +G L DSL + L+
Sbjct: 1 DFDGDCVHLFYPQSLSAKAEVLELFAVGKQLLSSHTGNFNSQLATDSLLSLKLMFS-HYF 59
Query: 512 LSHLQMQQLQMFCPHRFLSPDIFKISKD-SVWSGKQLFSMLLPPDFEYTFPSKDVYISGG 570
QQL MF P + + K ++W+ Q+ LP F+ S G
Sbjct: 60 FDKAAAQQLAMFLPMALPDSAVVDVRKSGAMWTTLQILGAALPDGFD----------SCG 109
Query: 571 KLISAEGSSWLR-DYEGNLFQ----------YLIKRYRDKVLDFLYAAQEVLCEWLSVRG 619
+ + S +L DY +L Y +K D VL F + Q +L E L G
Sbjct: 110 ETHTIGKSQFLGIDYHRDLISSILNDVITSIYFMKGPND-VLKFFNSLQPLLMENLCTEG 168
Query: 620 MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRS 679
++SL D FY + +D + + ++ L S+ + ES
Sbjct: 169 FSISLRD-----------------FYMTKAVRDGIQERIQCMSKLLHHLRSSYN-ESVEV 210
Query: 680 LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKL 739
HL EK + V K + + + + S+ K+
Sbjct: 211 QLEHHLRNEK----------LPVIDFVL------------KSSGMGVLIDSKSESAFNKV 248
Query: 740 VQHSLCLGLQHSLAPLSFR--FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGL 797
VQ LGLQ S + H+++ + + T ++ + +V + GL
Sbjct: 249 VQQIGFLGLQISDRGKFYXXTLVHDMA-QLFQKKYPSVGTNPSEEF---GLVRSCLFYGL 304
Query: 798 NPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
+P + IHS++SR+ L PGTL LM +RD+ YDGTVRN N I+QF
Sbjct: 305 DPYQGMIHSISSREVIVRSTRGLTEPGTLFXNLMAILRDVVICYDGTVRNVSSNSIIQFE 364
Query: 856 YNIEGTST-PTGEIGDQPVGSLSACAISEAAYSA-LDQPISLLETSPLLNLKNVLECGSK 913
Y G S P+ PVG L+A A+S AY A LD S + ++ K +L CG
Sbjct: 365 YGSSGGSNLPSEFCAGDPVGVLAATAMSNPAYKAXLDSSPSSNSSWEMM--KEILLCGVS 422
Query: 914 KSN--ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMK 971
N +D+ + L+L++ +R + E A VKNHL + L D +I Y+ + +
Sbjct: 423 FKNDVSDRRVILYLNDCGCRRGYCREKAAYVVKNHLSKVCLKDAADEFLIEYAGRQAGYE 482
Query: 972 HF---SPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKIS--VPDMLISNKDC 1026
+ + I H + + ++ G+ + + + R + KI +++S +
Sbjct: 483 NSETGTGLIGHIRLNQGQLENLGISVLEVHERCQENISSFRXKKKIGNLFKRIVLSVSEF 542
Query: 1027 SSI--NMQKECNDAFCVTVMIVE----NFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK 1080
S N +C +A C+ + + +R S L + + P LL TV+KG +
Sbjct: 543 CSFCHNSGSKCLNAPCLRFSWPDASDDHLERVSHILADM---IXPILLDTVIKGDPRVSS 599
Query: 1081 VDILW--KDKQKASKSHDDS-FGELYLRVSMSGQC--HITSLWSALMNDCHQIMDMIDWT 1135
+I W D +S S GEL L + + + W LM+ C ++ +ID T
Sbjct: 600 ANIAWISPDTMSWIRSPSKSQRGELALDIVLEKEAVKXRGDAWRXLMDSCLPVIHLIDTT 659
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
RS P I+ GI + + L ++++ K +L +HL+++AN+++ G VG N
Sbjct: 660 RSIPYAIKQVQELIGISCAFEQAVXRLSTSVTMVTKGVLKDHLVLLANSMTCAGNLVGFN 719
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGG 1255
A G+ + +V PF +A P F +AA+ VD+L V + WGK +VGTG
Sbjct: 720 AGGIKALSRSLNVQIPFTEATLFTPRKCFERAAEKCHVDSLSSIVASCSWGKHVAVGTGS 779
Query: 1256 HFDIIYSGEGRTLSKP--VDVYNLL 1278
F+++ + + P DVY+ L
Sbjct: 780 RFEVLLNTRNVEWNIPDTRDVYSFL 804
>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
Length = 1263
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 241/927 (25%), Positives = 391/927 (42%), Gaps = 147/927 (15%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ GI + + TE K SV EI A + + RLG P +C +CG
Sbjct: 9 IDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCK 125
+ C GHFG I+ ILH F+ +I KLL S C+
Sbjct: 69 AR-CPGHFGHIELAEPILHIAFIDNIYKLLQS-------------------------TCR 102
Query: 126 YCVR-----NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDA 180
C R + + R++ K ++ + + I +I EK +KK K+ P + G
Sbjct: 103 SCARLKVPQEDLEAFKRIKDKHAAYTVVSQKRIPEQIIEK-AKKAKECP--HCG----KT 155
Query: 181 QQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEF--ILSKDAPFLKCFPVTPNNH----- 233
Q E KP V + + L + +IRE F IL +D L P+T
Sbjct: 156 QYELVFTKPTIFVEKTEIGEHRLLPI--TIRERFSQILDEDLELLSYDPITARPEWFILQ 213
Query: 234 -----RVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSH------LVQDCLKISK 282
VT P D+ T + ++ R E +VQD + + +
Sbjct: 214 ALPVPPVTVRPSIILETGIRSEDDLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQ 273
Query: 283 LHLDKSSRKDSAEVRQK--------KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDP 334
H + + + Q K + + + GKR D R V++ DP
Sbjct: 274 YHSTTYFDNEVSGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDP 333
Query: 335 NIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRR- 392
N+ L E+G+P QVA +L I E + WN ER+ + I+ G Y+ R G V+IR
Sbjct: 334 NLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDG-VKIRLD 392
Query: 393 --------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPL 444
+ LE+G +I R L DGDIV+ NR PS+H S++A V+VLP ++P
Sbjct: 393 FVEDRSTIAETLEIGYLIERHLADGDIVMFNRQPSLHQMSIMAHYVRVLP-GKTFRLHPS 451
Query: 445 CCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHL 504
C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G ++ +D +T A+L
Sbjct: 452 VCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGGPIIGALRDFVTGAYL 511
Query: 505 LMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTF--- 560
L +D LS + M + P +KD ++GKQLFS+ LP DF Y
Sbjct: 512 LTKDDTTLSVQEFSNYAMLGGYTEPLPKPATKTKDGPAYTGKQLFSLFLPKDFNYVLTSK 571
Query: 561 -------PSKDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRDKV-LDFLYAAQEV 610
P KDV I G+LIS + +S + ++ + K Y + V +FL + +
Sbjct: 572 WSKGTKGPEKDVVIKNGELISGVIDKTSIGAEEPESVLHRITKDYGNAVGKNFLNSILIM 631
Query: 611 LCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH----MN 666
+ ++++ G + DL + + + ++D+I Q+T + + D + +
Sbjct: 632 VKQFITHYGFSYGYGDLEVPEKNVQQ--ILDDI-------QETYDVVADLTDQYNKGTLK 682
Query: 667 FLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLA 726
K E+ + L ++++ A + S+D N+
Sbjct: 683 LTRGMKAEEALEAYIVNELGKAREKAGATANDSLD------------------DSNAGKI 724
Query: 727 MFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPS 786
M G++G+ L + Q + LG Q R S A + D+ A ++ S
Sbjct: 725 MATTGARGSALNVGQMAGALGQQSRRGN---RMNDGYSNRALTHYQEHDSNPDAHGFVKS 781
Query: 787 AVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTV 843
++ TGL LE F H++ R+ D A G + RRL+ + + YDGTV
Sbjct: 782 -----NYRTGLTALEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTV 835
Query: 844 RNAYGNQIVQFSYNIEGTSTPTGEIGD 870
R+ +G+ IVQF Y +G + G+
Sbjct: 836 RDPHGH-IVQFLYGEDGIDVQKSDHGE 861
>gi|329765754|ref|ZP_08257323.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137820|gb|EGG42087.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 1263
Score = 219 bits (558), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 243/936 (25%), Positives = 396/936 (42%), Gaps = 165/936 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ I + + TE K SV EI A + + RLG P +C +CG
Sbjct: 9 IDAIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCK 125
+ C GHFG I+ ILH F+ +I KLL S C C + K Q+ RK + +
Sbjct: 69 AR-CPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARL-KVPQEDLDEFRKIKEKHAA 126
Query: 126 YCV----RNPAQWYPRMR--------FKLSSKDLSGKTAIIVEIDE---------KLSKK 164
Y V R P Q + + K + + K I VE E + ++
Sbjct: 127 YTVISEKRIPEQIIEKAKKAKECPHCGKTQYELIFTKPTIFVEKTEIGEHRLLPITIRER 186
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REEFILSKDAPFL 223
++ DD + +D + +P +L V + V PSI E I S+D
Sbjct: 187 FSQIIDDDLHLLAYDPV----TARPEWFILQALPVPPVT--VRPSIILETGIRSEDDLTH 240
Query: 224 KCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGRDIEL 270
K + N R+ E A + +FDN + + GR L
Sbjct: 241 KMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEVSGIPQAHHRSGR--PL 298
Query: 271 SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVV 330
L Q R E R + ++ GKR D R V+
Sbjct: 299 KTLTQ--------------RLKGKEGRFRGSLS---------------GKRVDFSSRTVI 329
Query: 331 TGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVR 389
+ DPN+ L E+G+P Q+A +L I E + WN ER+ ++ I+ G Y+ R G V+
Sbjct: 330 SPDPNLDLSEVGVPEQIAMKLTIPEIVTEWNIERMRTLVINGPNKFPGVNYIVRPDG-VK 388
Query: 390 IRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
IR + LE+G ++ R L +GDIVL NR PS+H S++A V+VLP
Sbjct: 389 IRLDFVEDRSTIAETLEIGYLVERHLANGDIVLFNRQPSLHQMSIMAHYVRVLP-GKTFR 447
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
++P C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G ++ +D +T
Sbjct: 448 LHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGGPIIGALRDFVT 507
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYT 559
A+LL +D LL+ + M + P +KD +++GKQLFS+ LP DF Y
Sbjct: 508 GAYLLTKDDTLLTPQEFYNYAMLGGYNEKFPKPGSKNKDGPMYTGKQLFSLFLPKDFNYV 567
Query: 560 FPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRD-KVLDFLYA 606
S KDV I G+LIS + SS + ++ + K Y + K +FL +
Sbjct: 568 ITSKWSKGTKGAQKDVVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNS 627
Query: 607 AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI--FYGLREAQDTCNFQQLMVDSH 664
++ ++++ G + +DL + ++ ++D+I YG+ + T +++
Sbjct: 628 ILIMVKQYITHYGFSYGYADLEVPEK--EKQQILDDIQETYGVI-SDLTSQYEK----GT 680
Query: 665 MNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
+ K E+ + L + ++ + S+D + N+
Sbjct: 681 LKLTRGMKPEEALEAYIVNELGKARDKAGMTADQSLD------------------QSNAG 722
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI 784
M G++G+ L + Q + LG Q +RL AG N Y
Sbjct: 723 RIMATTGARGSALNIGQMAGALGQQSRRG---------------SRLHAGYNNRALPHYQ 767
Query: 785 -----PSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRD 834
P A V++++ GL+ LE F H++ R+ D A G + RRL+ +
Sbjct: 768 EHDNNPDAHGFVKSNYREGLSALEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINALEH 826
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
+ YDGTVR+ +G+ I+QF Y +G + G+
Sbjct: 827 IRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGE 861
Score = 43.9 bits (102), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 76/388 (19%), Positives = 147/388 (37%), Gaps = 79/388 (20%)
Query: 871 QPVGSLSACAISEAAYSALDQPI---SLLETSPLLNLKNVLE-CGSKKSNADQTMSLFLS 926
Q VG ++A +I E + + E + L L ++E ++K TM ++L
Sbjct: 939 QAVGIITAQSIGEPGTQMTLRTFHFAGIAERNVTLGLPRLIELVDARKKPVTPTMDIYLD 998
Query: 927 NKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEI 986
N+ K R A++V ++ +S ++S S Y+ Q K I
Sbjct: 999 NESKKSREK----AIDVARNILQTKVSALISDSETDYTTQI----------------KLI 1038
Query: 987 MKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIV 1046
+ LKE R C E + SNK K +T+ +V
Sbjct: 1039 LSPNRLKE--------RGCTVGEVEAALQ------SNKKF------KMETTGELITLKLV 1078
Query: 1047 ENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRV 1106
E ++ + + +L T VKG +I++V ++ KD + ++ + ++ +
Sbjct: 1079 EESDAPTV------IAIRNKVLNTTVKGVPDIERVTLVQKDDEWVIQTTGSNIAKV---L 1129
Query: 1107 SMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAI 1166
+SG ID +N+ GI+A + L + +
Sbjct: 1130 EVSG---------------------IDKKNVRTNNVFEIAGTLGIEASRNALINELNNTL 1168
Query: 1167 SDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK 1226
D G + ++++V++ + + G + G+A + S +A F +
Sbjct: 1169 EDQGLEVDDRYIMLVSDLMCSRGYMQQIGRHGIA-----GTKDSVLARAAFEITVPTIAH 1223
Query: 1227 AAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
AA AG V+ L+G + + G + +G+G
Sbjct: 1224 AALAGEVEQLKGITENVIVGSIIPIGSG 1251
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 217/874 (24%), Positives = 382/874 (43%), Gaps = 109/874 (12%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G + +C +CG + C GHFG I+ + HP F+ + K+L IC C +
Sbjct: 57 DPRMGTIDRNFKCQTCG-EGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRL 115
Query: 106 RKERQKGAGSSRKEQPR--------VCKYC----VRNPAQWYPRMRFKLSSKDLSGKTAI 153
+ + A + R R V YC + P + P+ + +D K
Sbjct: 116 KADSSDPAFADRIRHVRDPKARMQAVWNYCKSKMICEPDE--PKDENEGGDQDEPKKGHG 173
Query: 154 IVEIDEKLSKKNK-KLPDDYWGFIPFD-AQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR 211
+ L +K KL F+ + + E+ S++P++++ +V LK + S
Sbjct: 174 GCGAQQPLIRKEGLKL------FVQYKRGKDEDESLQPDKRLFPPHEVYTALKKISESDL 227
Query: 212 EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFF--DNWTRHLKKMVDYRG---- 265
LS D + +T V + + + D+ T L ++
Sbjct: 228 HLLGLSVDYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRR 287
Query: 266 --RDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRW--------IKD 315
++ +H++ + ++ + H+ D A + Q +R ++
Sbjct: 288 CEQEGAPAHVINEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRG 347
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLL 374
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + + +
Sbjct: 348 NLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIAYLQELVRNGPTV 407
Query: 375 EKGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++
Sbjct: 408 YPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHR 467
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 468 VRLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANK 526
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QD+L L Q+Q + ++ P +P I K +W+GKQ
Sbjct: 527 PVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGTVPTPAIIK--PKPMWTGKQ 584
Query: 547 LFSMLLP--------PDFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKR 595
L SM +P PD + P D + I G ++ + +G L + +
Sbjct: 585 LLSMCIPRGINIFRAPDPKSNNPVFDDGMMIENGDIVFGVVEKKTVGASQGGLVHVVFRE 644
Query: 596 YRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ L+ Q+V+ WL G ++ + D + + + MD I + E +
Sbjct: 645 KGPEATRTLFTGLQQVVNYWLFHNGFSIGIGD------TIADRGTMDYIQKQIAERKQ-- 696
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N Q+M D++ + L + S + + E++ + A + A KH+
Sbjct: 697 NVLQIMDDAYHDRLRPSPGMTIRESFEKK---VERELNLARDHSGQYAQKHL-------- 745
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 746 ----KEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHRTLPH------- 794
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + A+ + VENS+L GL P E F H++ R+ G + R
Sbjct: 795 --FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 847
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 RLVKALEDVQVCYDGTVRNSLGD-LIQFIYGEDG 880
>gi|393794932|ref|ZP_10378296.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 1263
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 243/936 (25%), Positives = 395/936 (42%), Gaps = 165/936 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ I + + TE K SV EI A + + RLG P +C +CG
Sbjct: 9 IDAIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCK 125
+ C GHFG I+ ILH F+ +I KLL S C C + K Q+ RK + +
Sbjct: 69 AR-CPGHFGHIELAEPILHIAFIDNIYKLLQSTCRSCARL-KVPQEDLDEFRKIKEKHAA 126
Query: 126 YCV----RNPAQWYPRMR--------FKLSSKDLSGKTAIIVEIDE---------KLSKK 164
Y V R P Q + + K + + K I VE E + ++
Sbjct: 127 YTVISEKRIPEQIIEKAKKAKECPHCGKTQYELIFTKPTIFVEKTEIGEHRLLPITIRER 186
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REEFILSKDAPFL 223
++ DD + +D + +P +L V + V PSI E I S+D
Sbjct: 187 FSQIIDDDLHLLAYDPV----TARPEWFILQALPVPPVT--VRPSIILETGIRSEDDLTH 240
Query: 224 KCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGRDIEL 270
K + N R+ E A + +FDN + + GR L
Sbjct: 241 KMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEVSGIPQAHHRSGR--PL 298
Query: 271 SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVV 330
L Q R E R + ++ GKR D R V+
Sbjct: 299 KTLTQ--------------RLKGKEGRFRGSLS---------------GKRVDFSSRTVI 329
Query: 331 TGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVR 389
+ DPN+ L E+G+P Q+A +L I E + WN ER+ + I+ G Y+ R G V+
Sbjct: 330 SPDPNLDLSEVGVPEQIAMKLTIPEIVTEWNIERMRKLVINGPNTFPGVNYIVRPDG-VK 388
Query: 390 IRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
IR + LE+G ++ R L +GDIVL NR PS+H S++A V+VLP
Sbjct: 389 IRLDFVEDRSTIAETLEIGYLVERHLANGDIVLFNRQPSLHQMSIMAHYVRVLP-GKTFR 447
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
++P C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G ++ +D +T
Sbjct: 448 LHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGGPIIGALRDFVT 507
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYT 559
A+LL +D LL+ + M + P +KD +++GKQLFS+ LP DF Y
Sbjct: 508 GAYLLTKDDTLLTPQEFYNYAMLGGYNEKFPKPGSKNKDGPMYTGKQLFSLFLPKDFNYV 567
Query: 560 FPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRD-KVLDFLYA 606
S KDV I G+LIS + SS + ++ + K Y + K +FL +
Sbjct: 568 ITSKWSKGTKGAQKDVVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNS 627
Query: 607 AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI--FYGLREAQDTCNFQQLMVDSH 664
++ ++++ G + +DL + ++ ++D+I YG+ + T +++
Sbjct: 628 ILIMVKQYITHYGFSYGYADLEVPEK--EKQQILDDIQETYGII-SDLTSQYEK----GT 680
Query: 665 MNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
+ K E+ + L + ++ + S+D + N+
Sbjct: 681 LKLTRGMKPEEALEAYIVNELGKARDKAGMTADQSLD------------------QSNAG 722
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI 784
M G++G+ L + Q + LG Q +RL AG N Y
Sbjct: 723 RIMATTGARGSSLNIGQMAGALGQQSRRG---------------SRLHAGYNNRALPHYQ 767
Query: 785 -----PSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRD 834
P A V++++ GL+ LE F H++ R+ D A G + RRL+ +
Sbjct: 768 EHDNNPDAHGFVKSNYREGLSALEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINALEH 826
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
+ YDGTVR+ +G+ I+QF Y +G + G+
Sbjct: 827 IRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGE 861
Score = 43.9 bits (102), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 76/388 (19%), Positives = 147/388 (37%), Gaps = 79/388 (20%)
Query: 871 QPVGSLSACAISEAAYSALDQPI---SLLETSPLLNLKNVLE-CGSKKSNADQTMSLFLS 926
Q VG ++A +I E + + E + L L ++E ++K TM ++L
Sbjct: 939 QAVGIITAQSIGEPGTQMTLRTFHFAGIAERNVTLGLPRLIELVDARKKPVTPTMDIYLD 998
Query: 927 NKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEI 986
N+ K R A++V ++ +S ++S S Y+ Q K I
Sbjct: 999 NESKKSREK----AIDVARNILQTKVSALISDSETDYTTQI----------------KLI 1038
Query: 987 MKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIV 1046
+ LKE R C E + SNK K +T+ +V
Sbjct: 1039 LSPNRLKE--------RGCTVGEVEAALQ------SNKKF------KMETTGELITLKLV 1078
Query: 1047 ENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRV 1106
E ++ + + +L T VKG +I++V ++ KD + ++ + ++ +
Sbjct: 1079 EESDAPTV------IAIRNKVLNTTVKGVPDIERVTLVQKDDEWVIQTTGSNIAKV---L 1129
Query: 1107 SMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAI 1166
+SG ID +N+ GI+A + L + +
Sbjct: 1130 EVSG---------------------IDKKNVRTNNVFEIAGTLGIEASRNALINELNNTL 1168
Query: 1167 SDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK 1226
D G + ++++V++ + + G + G+A + S +A F +
Sbjct: 1169 EDQGLEVDDRYIMLVSDLMCSRGYMQQIGRHGIA-----GTKDSVLARAAFEITVPTIAH 1223
Query: 1227 AAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
AA AG V+ L+G + + G + +G+G
Sbjct: 1224 AALAGEVEQLKGITENVIVGSIIPIGSG 1251
>gi|255543995|ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase, putative [Ricinus communis]
Length = 991
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 183/653 (28%), Positives = 307/653 (47%), Gaps = 73/653 (11%)
Query: 15 GILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGH 72
G + GI G++T E SV + I S++TNP LGLP +C SCG + CEGH
Sbjct: 14 GEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESCGTSEPGKCEGH 73
Query: 73 FGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPA 132
FG+I+ P I HP +S++ ++L+ +C KC ++ + K +G + + C A
Sbjct: 74 FGYIELPIPIYHPSHVSELKRMLSLLCLKCLKLKTNKIKSSGVAER-----LFSCCEEAA 128
Query: 133 QWYPRMRFKLSSKDL-SGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNR 191
Q +S K++ + A I+++ KL + +L D +W F+ + + + R
Sbjct: 129 Q--------ISIKEVKTTDGAYILQL--KLPSR-MRLRDGFWNFLERYGFRYGDDI--TR 175
Query: 192 KVLSCKQVSYLLK---DVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKL 248
+L C+ + L + D + ++ +D ++ PV PN V ++ S
Sbjct: 176 TLLPCEVLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVSVMSSD 235
Query: 249 FFDNWTRHLKKMVD-----------YRGRDIELSHLVQDCLKISKLHLDKSSRKDSAE-- 295
+ + + K V+ + ++E L + ++ S +D E
Sbjct: 236 LSISMLKKVLKQVEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDVGERF 295
Query: 296 -VRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
V ++ N D S + L ++ + + K + R V+TGD + EIGIP ++A+R+
Sbjct: 296 GVHKESN-DSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKCVNEIGIPSEIAQRITFE 354
Query: 355 ERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTD 408
ER+N+ N + L +C+++R + Y R+G + L LG I++R + D
Sbjct: 355 ERVNAHNMQYLQELVDNKLCLTYR--DGSSTYSLREGS----KGHTFLRLGQIVHRRIMD 408
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
GD+V INRPP+ H HSL AL+V V V INPL C P DFDGDC+H + PQ++ A
Sbjct: 409 GDMVFINRPPTTHKHSLQALSVYVHD-GHTVKINPLICGPLSADFDGDCIHLFYPQSLAA 467
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRF 528
+ E+ EL +++KQL++ SG L L DSL + M ++ L QQL MF
Sbjct: 468 KAEVLELFSVEKQLLSSHSGNLNLQLTSDSLLSLK-TMFNTYFLDRAAAQQLAMFVSSSS 526
Query: 529 L-SPDIFKIS-KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEG 586
L P ++K +W+ Q+ LP F+ SG + + + D+
Sbjct: 527 LPQPALWKAHCSVPIWTALQILQTALPSQFD---------CSGERYLISNTDIVKVDFSR 577
Query: 587 NLFQYLI---------KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
++ Q +I ++ D V F + Q +L E L G +V L D Y++
Sbjct: 578 DVVQAVINDIVISMFFEKGPDAVFKFFNSLQPLLMESLFSEGFSVGLEDFYIS 630
Score = 97.8 bits (242), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 122/239 (51%), Gaps = 35/239 (14%)
Query: 785 PSA---VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAY 839
PSA ++++ F GL+P E +HS+++R+ L PGTL + LM +RD+ Y
Sbjct: 740 PSAKHGLIQSCFFHGLDPYEEMVHSISAREVMVRSTRGLSEPGTLFKNLMAILRDVVICY 799
Query: 840 DGTVRNAYGNQIVQFSYNIEG-----TSTPTGEIGDQPVGSLSACAISEAAYSALDQPIS 894
DGTVRN N I+QF Y ++ + P GE PVG L+A A+S AY A
Sbjct: 800 DGTVRNVCSNSIIQFEYGMKAGIKAQSLFPAGE----PVGVLAATAMSNPAYKA------ 849
Query: 895 LLETSPLLN-----LKNVLECGSKKSN--ADQTMSLFLSNKLGKRRHGFEYGALEVKNHL 947
+L+++P N +K +L+C N D+ + L+ + + + E A VKNHL
Sbjct: 850 VLDSTPSSNSSWELMKEILQCRVNFKNDITDRRVILYFNYCGCGKFYCQERLAYSVKNHL 909
Query: 948 ECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSI-IDSLYRQC 1005
E ++L DI M Y Q + + H H +K+T L+E ++ ++ ++R+C
Sbjct: 910 EKVILKDIALCFMCEYKSQPTIAD--AGLVGHVH-----LKKTKLQELNVSMEVIHRKC 961
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 218 bits (554), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 230/892 (25%), Positives = 389/892 (43%), Gaps = 133/892 (14%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 INDPRLGTIDRQYNCETC-EEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
I+ A S E R R+P + + + ++LS L + V+ DE+ SK
Sbjct: 114 KIKANT---ADSKFTEALRF-----RDPKRRFDSI-WRLSKDVLICEADAPVD-DEEFSK 163
Query: 164 KNKKLPDDYWG------------------FIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
++K + G + P A E+ +P +KV++ + ++
Sbjct: 164 DSQKG-RSHGGCGNAQPTVRKEGICLVGTWKPSKAMMEDEMAQPEKKVITPTMALNIFRN 222
Query: 206 VDPSIREEFILSKDAP-----FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 260
+ LS D L PV P R + V A S + D+ T L ++
Sbjct: 223 ISVEDVRIMGLSNDYARPEWMILTVLPVPPPTVRPSVVMGATSGARGE--DDLTYKLAEI 280
Query: 261 VDYRG------RDIELSHLVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDISN-SSGL 310
V ++ H++++ + + H+ D A QK N + S L
Sbjct: 281 VRANQNVQRCEQEGAPEHVIREFESLLQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRL 340
Query: 311 RW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS 366
+ ++ ++GKR D R V+TGDPN++L E+G+P A L E + WN E+L
Sbjct: 341 KGKEGRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPWNIEKLQ 400
Query: 367 VCISFRL-LEKGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPS 419
I+ + G Y+ R G L +R A +L G + R L +GD +L NR PS
Sbjct: 401 KLIANGPNIHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDNGDYILFNRQPS 460
Query: 420 IHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALD 479
+H S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ AR EL EL +
Sbjct: 461 LHKESMMGHRVRVMPFSTF-RMNLSVTSPYNADFDGDEMNLHVPQGEEARAELAELTLVP 519
Query: 480 KQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKI 536
K +++ Q L+ + QD+L + + L+ Q+ L ++ P P I K
Sbjct: 520 KNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQVMNLMLWVPDWDGAIPPPAILK- 578
Query: 537 SKDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SW 580
W+GKQ+ SM P P E P D + I GG+L+ S
Sbjct: 579 -PRPRWTGKQMISMAFPSGLNLLRVDKDGSPLAEKFSPLSDGGLLIHGGQLMYGMLSKKT 637
Query: 581 LRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ G + + Y D + F AQ ++ WL G ++ + D H+ ++
Sbjct: 638 VGASGGGVIHTIFNEYGPDTCVKFFSGAQTIVGYWLLHNGFSIGIGDTIPDQHTINK--- 694
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALS 696
+ EA N +Q + + ++A +E+T +L G ++ ++E + S AL+
Sbjct: 695 -------IEEA--VRNRKQEVEE------ITASATENTLEALPGMNVRETFESKVSRALN 739
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
A +A +++L N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 740 NARDEAGDATEKSLKDL--------NNAIQMARSGSKGSAINISQMTALVGQQSVEGKRI 791
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 792 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 837
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 838 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 888
>gi|126465703|ref|YP_001040812.1| DNA-directed RNA polymerase subunit A' [Staphylothermus marinus F1]
gi|126014526|gb|ABN69904.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus
F1]
Length = 886
Score = 217 bits (552), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 249/946 (26%), Positives = 390/946 (41%), Gaps = 185/946 (19%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSS 60
VP+ I + I GI + E K+SV I GA + V + RLG P C
Sbjct: 5 VPTRI-SAIKFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIEPREVCPV 63
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNS---ICPKCKTIRKE--------- 108
CG R++C GHFG I+ ++H F+ I L + +C + K E
Sbjct: 64 CG-NTRESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEDERKRYLELLN 122
Query: 109 ------------------RQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGK 150
R+K A + R C +C Q+ R+ S + G+
Sbjct: 123 SLKELGLEYLVKRLHEYIRRKAAATQR------CPHC--GAKQYRIRLEKPHSFYEDRGE 174
Query: 151 TAII----VEIDEKLSKKNKKLPDDY--WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
+ +E+ +L K L +D G P DA +P VL+ V +
Sbjct: 175 EGYVKLNPIEVRARLEKI---LDEDVRLLGGDPIDA-------RPEWMVLTVLPVPP--R 222
Query: 205 DVDPSIR-EEFILSKDAPFLKCFPVTPNNHRVTE-----VPHAFSHEKKLFFDNW---TR 255
V PSI E I S+D K + N+R+ E P+A + D W
Sbjct: 223 SVRPSILLETGIRSEDDLTHKLVDIIRINNRLREHIESGAPNA------IIEDEWELLQY 276
Query: 256 HLKKMVDYRGRDIELS-HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIK 314
H+ D I ++ H LK + R E R + N+
Sbjct: 277 HVTTYFDNEAPGIPVARHRSGKVLK------GLAQRLKGKEGRFRGNLR----------- 319
Query: 315 DVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRL 373
GKR D R V++ DPNI + E+G+P VA+ L + ER+ WN E + + ++
Sbjct: 320 ----GKRVDFSARTVISPDPNISINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPD 375
Query: 374 LEKGELYVCRKGGLVRIRRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHP 422
G YV R G RRI + L G I+ R L DGDIVL NR PS+H
Sbjct: 376 KWPGANYVIRPDG----RRISLKYVDRKAMAETLAPGFIVERHLRDGDIVLFNRQPSLHR 431
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++A V+VLP + +N L C P++ DFDGD ++ ++PQ+ AR E L+ ++K +
Sbjct: 432 ISIMAHVVRVLPYKTF-RLNLLVCPPYNADFDGDEMNLHVPQSEEARAEARMLMLVEKHI 490
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVW 542
+ + G ++ QD ++ A LL S LL+ + +L +R P+ + W
Sbjct: 491 LTPRYGGPIIGGLQDYISGAFLLTSKSTLLTREDVIELLGVAGYRGKLPEPAILKPKQYW 550
Query: 543 SGKQLFSMLLPPDFEYTFPSK------------------DVYISGGKLISA--EGSSWLR 582
+GKQL S+ LP DF Y P+K V + G L+ + +S R
Sbjct: 551 TGKQLISLFLPDDFNYKRPAKMAGATALRCIDEDCPHDSIVIVKNGVLLEGVLDKASIGR 610
Query: 583 DYEGNLFQYLIKRYRDKV----LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
+ +L +L+K Y + + +D++Y ++ + G T+ S L L + R +
Sbjct: 611 EEPESLIHWLVKEYGEDIARLFMDYVY---KMFLRFAEKYGFTMGYSHLLLPPEAKKRVL 667
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ E + +L+ H L +L+ E + LS+
Sbjct: 668 EIIE--------EKKKEVYELIEKYHRGELEPRPGRTIEETLEDEIIDL-------LSKK 712
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
+D D+ + Y N ++ M + G++GN + L Q + LG Q R
Sbjct: 713 LLD-------DVADTIIPYFKLSNPVIIMARTGARGNPINLTQMAALLGQQTIRG---RR 762
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
+ GD A+ + V + F+ GLNP+E F H+ R+ +D A
Sbjct: 763 ITRGYMHRTLPHFKPGDLGPEARGF-----VAHGFVDGLNPIEVFFHAAAGRE-GLTDTA 816
Query: 819 ---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G + RRL+ ++DL YDGTVR G +IVQF+Y +G
Sbjct: 817 VRTSQSGYMQRRLINALQDLRVEYDGTVRLPTG-EIVQFAYGEDGV 861
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 216 bits (550), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 234/867 (26%), Positives = 374/867 (43%), Gaps = 113/867 (13%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKF--PFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G N C +CG C GHFG + F IL FL I K+L C C +
Sbjct: 56 RMGTVNSALSCMTCGC-GVSECPGHFGHVNIHPTFNIL---FLKTIVKILKCTCVHCSRL 111
Query: 106 RKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN 165
R + E R+ + + ++ M+ K K + I K+SK
Sbjct: 112 LFNR------NTPEFKRIQQIANKR-KRFNELMKLKPMDKCMIDDYTGCGGIQPKISKNQ 164
Query: 166 KKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKC 225
+ + + + SV K +S + + L D S E IL+ C
Sbjct: 165 LSITQIFPNSNEIKQEIKAESVLQIFKRISTQDLELLGFDSINSNPEWMILT-------C 217
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS------HLVQDCLK 279
PV P + R + V H + + + D+ T L ++ +LS H + D +K
Sbjct: 218 LPVPPPHVRPS-VMHGLNDKAE---DDLTHKLADIIKSNATIQKLSKSGSPQHYLDDMIK 273
Query: 280 ISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRW--------IKDVVLGKRNDDCFRMVVT 331
I + H + + V + LR ++ ++GKR D R V+T
Sbjct: 274 ILQYHCATYMNNEISGVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLMGKRVDFSARTVIT 333
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKGELYVCRKGGLVRI 390
DP I++ ++G+P +A + + E++ +N+ER++ + ++ G YV R G RI
Sbjct: 334 PDPTIEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNGPETYPGAKYVLRDDG-TRI 392
Query: 391 -------RRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
R D ++L G I R L DGD+VL NR PS+H S++ VKV+P S+ +
Sbjct: 393 DLKFLSDRSTDQVQLQYGYTIERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMPYSTF-RL 451
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N +P++ DFDGD ++ ++PQ++ + EL EL+ + K +I QS R L++L QD+L A
Sbjct: 452 NLSVVTPYNADFDGDEMNLHLPQSLQTKTELLELMMVPKNIITPQSHRPLIALVQDTLLA 511
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEY 558
V + M M+ + P I K +W+GKQLFS+LLP Y
Sbjct: 512 GSKCTRRDVYIEKDVMMNCLMYLQDFNGQLPVPAILK--PKPLWTGKQLFSLLLPSIDYY 569
Query: 559 TFPS--------------------KDVYISGGKLISA-EGSSWLRDYEGNLFQYLIK-RY 596
S + IS G+L++ L G+L ++ +
Sbjct: 570 GISSTHDDEVGDLKHLDDHLPEFDTGIIISNGELLTGILDKKSLGSSHGSLIHIIVNDKG 629
Query: 597 RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL-REAQDTCN 655
+ FL Q VL WL G +V + D +A +KI +EI RE +
Sbjct: 630 TQEGKKFLGQCQHVLNYWLLQHGFSVGIGDT-IADGETVKKI--EEIINNAEREVKK--- 683
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
+V N L++A E R+++ S+E+ ++ L+ A DA HV +++
Sbjct: 684 ----IVKQAHNGLVTA---EPGRTVEQ---SFERSINSTLNAAREDAGMHVKKSLKD--- 730
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGD 775
NS+ +M +GSKG+ L + Q C+G Q+ R P D
Sbjct: 731 -----SNSIKSMVTSGSKGSYLNISQIIACVGQQNVEGK---RVPFGFKNRTLPHFSTDD 782
Query: 776 NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMR 833
+ ++ + V NS+L GL P E F H++ R+ G + RRL+ M
Sbjct: 783 HGPESRGF-----VANSYLRGLTPQEFFFHTMGGREGLIDTAVKTAETGYIQRRLVKAME 837
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGTVR+A GN I+QF Y +G
Sbjct: 838 DVKVNYDGTVRDASGN-IIQFLYGEDG 863
Score = 47.0 bits (110), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 133/349 (38%), Gaps = 68/349 (19%)
Query: 943 VKNHLECLMLSDIVSTSMIIYSP--------------------QTGSMKHFSPWICHFHV 982
VK LE L I ++ IIY P +T FSPW F +
Sbjct: 1125 VKEELEYSNLGSITRSTQIIYDPDIFNSVIESDQFFIREMLEEKTIDPNTFSPWSLRFVL 1184
Query: 983 RKEIMKRTGLKEH---SIIDSLYRQ-------CKAARTELKISVPDMLISNKDCSSINMQ 1032
+E+M EH S I ++ +Q C + + + + I N + S +
Sbjct: 1185 DREMMS-----EHLNMSQIANIIKQEFQNDISCFYSDDNSEELILIIRIRNSEKSKSETE 1239
Query: 1033 KECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKAS 1092
+ D+ MIVE KR ++ L + +KG +KKV + K +
Sbjct: 1240 DDEEDS----SMIVEFLKRLESNM----------LSQLSLKGHNNLKKV---FYRKDENI 1282
Query: 1093 KSHDDSFGELYLRVSMSGQ-CHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGI 1151
K + E R S+ + C + S+ S +D+ + +++ GI
Sbjct: 1283 KFFSNKGVEKKTRWSLETEGCDLLSVMSH---------PQVDFRNTLSNDVIEVEKVLGI 1333
Query: 1152 DAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSP 1211
+A + L I G + HL I+ + ++ G + GLA S + P
Sbjct: 1334 EACRNLLMKELRKVIEFDGSYVNYRHLAILCDVMTQGGVITAVTRHGLA-----RSDNGP 1388
Query: 1212 FVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260
++ F ++AA+ VD L+G + GK+ +GTG FD++
Sbjct: 1389 LMRCSFEQTVEVLVEAAQFSDVDTLKGVSANVMVGKLAPIGTGT-FDLV 1436
>gi|340344217|ref|ZP_08667349.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519358|gb|EGP93081.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 1263
Score = 216 bits (550), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 240/936 (25%), Positives = 396/936 (42%), Gaps = 165/936 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ I + + TE K SV EI A + + RLG P +C +CG
Sbjct: 9 IDAIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCK 125
+ C GHFG I+ +LH F+ +I KLL S C C + K Q+ RK + +
Sbjct: 69 AR-CPGHFGHIELAEPVLHIAFIDNIYKLLQSTCRSCARL-KVPQEDLEEFRKIKEKHAA 126
Query: 126 YCV----RNPAQWYPRMR--------FKLSSKDLSGKTAIIVEIDE---------KLSKK 164
Y V R P Q + + K + + K I VE E + ++
Sbjct: 127 YTVISEKRIPEQIIEKAKKAKECPHCGKTQYELIFTKPTIFVEKTEIGEHRLLPITIRER 186
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REEFILSKDAPFL 223
++ DD + +D + +P +L V + V PSI E I S+D
Sbjct: 187 FTQIIDDDLNLLSYDPV----TARPEWFILQALPVPPVT--VRPSIILETGIRSEDDLTH 240
Query: 224 KCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGRDIEL 270
K + N R+ E A + +FDN + + GR L
Sbjct: 241 KMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHHRSGR--PL 298
Query: 271 SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVV 330
L Q R E R + ++ GKR D R V+
Sbjct: 299 KTLTQ--------------RLKGKEGRFRGSLS---------------GKRVDFSSRTVI 329
Query: 331 TGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVR 389
+ DPN+ L E+G+P QVA +L I E + WN ER+ ++ I+ G Y+ R G V+
Sbjct: 330 SPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRTLVINGPNKFPGVNYIVRPDG-VK 388
Query: 390 IRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
IR + LE+G ++ R L +GDIVL NR PS+H S++A V+VLP
Sbjct: 389 IRLDFVEDRSTIAETLEIGYLVERHLANGDIVLFNRQPSLHQMSIMAHYVRVLP-GKTFR 447
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
++P C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G ++ +D +T
Sbjct: 448 LHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGGPIIGALRDFVT 507
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYT 559
A+LL +D +L+ + M + P +KD +++GKQLFS+ LP DF Y
Sbjct: 508 GAYLLTKDDTVLTPQEFYNYAMLGGYTDKLPKPATKTKDGLMYTGKQLFSLFLPKDFNYV 567
Query: 560 FPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRD-KVLDFLYA 606
S KDV I G+L+S + SS + ++ + K Y + K +FL +
Sbjct: 568 ITSKWSKGTKGAQKDVVIKNGELLSGVIDKSSIGAEEPESVLHRIAKDYGNTKAKNFLNS 627
Query: 607 AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI--FYGLREAQDTCNFQQLMVDSH 664
++ ++++ G + +DL + ++ ++D+I YG+ + T +++
Sbjct: 628 ILIMVKQYITHYGFSYGYADLEVPEK--EKQQILDDIQETYGII-SDLTSQYEK----GT 680
Query: 665 MNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
+ + E+ + L + ++ + S+D + N+
Sbjct: 681 LKLTRGMRPEEALEAYIVNELGKARDKAGMTADQSLD------------------QSNAG 722
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI 784
M G++G+ L + Q + LG Q +RL AG N Y
Sbjct: 723 RIMATTGARGSALNIGQMAGALGQQSRRG---------------SRLHAGYNNRALPHYQ 767
Query: 785 -----PSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRD 834
P A V++++ GL+ LE F H++ R+ D A G + RRL+ +
Sbjct: 768 EHDKNPDAHGFVKSNYREGLSALEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINALEH 826
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
+ YDGTVR+ +G+ I+QF Y +G + G+
Sbjct: 827 IRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGE 861
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 216 bits (549), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 233/975 (23%), Positives = 403/975 (41%), Gaps = 183/975 (18%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNEC 58
+ P + + GI + E ++SV E G + + +PR G+ + + C
Sbjct: 7 KAPVRYVKRVQFGILSPDEIRRMSVTEGGIRYSETYEGGRPKLGGLMDPRQGVMDRNSRC 66
Query: 59 SSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRK 118
+C A ++ C GHFG I + H FL+ K+L +C C +
Sbjct: 67 QTC-AGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLL---------VSP 116
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY------ 172
P++ + +++ Q PR R GK + L+K N P++
Sbjct: 117 TNPKIKEVVMKSKGQ--PRKRLTYVYDLCKGKNICEGGDEMDLNKDNPDDPNNQQPRKQG 174
Query: 173 ---------------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR 211
W + D+Q+++ S LS ++V +LK + +
Sbjct: 175 HGGCGRYQPSIRRAGLDLTAEWKHVNEDSQEKKIS-------LSAERVWEILKHI--TDE 225
Query: 212 EEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYR 264
E FIL D F + PV P + R V + + + D+ T L ++
Sbjct: 226 ECFILGMDPKFARPDWMICTVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIIKSN 281
Query: 265 GRDIE------LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNS 307
+ +H++ + +K+ + H L ++ +K ++ K +
Sbjct: 282 NELMRNEQAGAAAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGK 340
Query: 308 SGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV 367
G I+ ++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++
Sbjct: 341 EGR--IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQE 398
Query: 368 CISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINR 416
+ + G Y+ R G RID L+ G + R + DGD+V+ NR
Sbjct: 399 LVRRGNSQYPGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNR 454
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
P++H S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L
Sbjct: 455 QPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENLH 513
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDI 533
+Q+I Q+ + ++ + QD+LTA + + V L QM L MF P + P I
Sbjct: 514 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAI 573
Query: 534 FKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--- 578
K +W+GKQLFS+++P PD E P K + K++ G
Sbjct: 574 LK--PKPLWTGKQLFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVM 631
Query: 579 -----SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASH 632
L G+L +V Y Q V+ WL + G ++ + D
Sbjct: 632 GILCKKTLGTSAGSLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 691
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
+ + EI +++A++ + +++ +H N + + R ++E Q +
Sbjct: 692 TYT------EIQKAIKKAKE--DVIEVIHKAH-NMELEPTPGNTLRQ------TFENQVN 736
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH-- 750
L+ A A K ++ N+L AM +GSKG+ + + Q C+G Q+
Sbjct: 737 RILNDARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVE 788
Query: 751 -SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFI 804
P FR PH + Y P + VENS+L GL P E F
Sbjct: 789 GKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFF 832
Query: 805 HSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
H++ R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 833 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLC 891
Query: 863 TPTGEIGDQPVGSLS 877
T E + P LS
Sbjct: 892 GETVEFQNLPTIKLS 906
>gi|429329501|gb|AFZ81260.1| DNA-directed RNA polymerase III C1 subunit, putative [Babesia equi]
Length = 1548
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 237/890 (26%), Positives = 375/890 (42%), Gaps = 129/890 (14%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
RLG CS+CG KD C GH+G++K + H F + ++L IC +C +
Sbjct: 134 RLGCSRNEMTCSTCG-KDNNHCVGHWGYVKLELPVFHVGFFKYLNQILYCICKRCSNLLL 192
Query: 108 ERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDL----SGKTAIIVEIDEKLSK 163
S +K Q +RN P + L K L + KT + K
Sbjct: 193 PED----SIKKYQE------IRNKGIDDPLFKVSLFRKILQECKNKKTCDRCGAPQGTVK 242
Query: 164 K-NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPS-IREEFILSKDAP 221
+ K D + +E V+ + L+ V +L + +DP+ ++ I S +
Sbjct: 243 RIVKPTLDQFMRMKHVVRHKESGKVQARDEELNPIVVKHLFEAMDPAHVKLLNIASPEKM 302
Query: 222 FLKCFPVTPNNHRVTEVP---HAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCL 278
+ ++PN R + VP + + + + K + + +D + S
Sbjct: 303 IITNLAISPNCIRPS-VPMEGQGSTEDDLTIITSDIIEVNKTLKKQLQDGQQSSRFILNW 361
Query: 279 KISKLHLDKSSRKDSAEVRQ---KKNIDISNSSGLRWIKDV-------VLGKRNDDCFRM 328
+ +LH + D+ V Q KNI + +K + GKR D R
Sbjct: 362 QFMQLHCTRLINTDAPAVSQLLSTKNITKPGRGLCQRLKGKEGRFRGNLSGKRADFSSRT 421
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGL 387
V++ DPN+ + EI +P Q+A +L E +N+ N E L I+ + G YV + G
Sbjct: 422 VISPDPNVGIDEIVVPEQIATKLTFPEVVNAGNIEVLRKAVINGWSVWPGASYVIKANGS 481
Query: 388 VRIRRI-------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
RI D LE+GDI+ R L DGDIV+ NR PS+H S++A V+V+P S
Sbjct: 482 KTTLRIANPNHIADNLEIGDIVERHLWDGDIVIFNRQPSLHRMSIMAHRVRVMP-GSTFR 540
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
N C P++ DFDGD ++ ++PQ AR E L+++ + L ++G L++ QD L+
Sbjct: 541 FNECVCQPYNADFDGDEMNMHLPQTYEARAESLYLLSVLQNLTTPRNGDPLIAAVQDFLS 600
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDI---FKISKDSVWSGKQLFSMLLPP--- 554
A++LL L+ Q Q+ + + + DI I +W+GKQ+F++LL P
Sbjct: 601 ASYLLTSKDRFLTRKQFCQICCYFTNASIQVDIPPPAIIYPTMLWTGKQIFNVLLRPSRK 660
Query: 555 ------------------DFEYTFP---------SKDVYI---SGGKLISAEGSSWLRDY 584
D+E+ + KD Y+ + + A G L
Sbjct: 661 SNVIVNFECREREFHNIKDYEHNYGMTNLHQCMCPKDGYVIFYNSELMCGALGVKSLGAS 720
Query: 585 EGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK--ILMD 641
+G LF L+K+ K+ + + ++ WL+ GMT+ L D+ + +RK +LMD
Sbjct: 721 KGGLFYQLLKKNSSKIAAECMLRVSKLASRWLAEFGMTIGLDDVRPGAELLNRKSELLMD 780
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
R ++ NF+ L E T LQ
Sbjct: 781 GYS---RVSEAIKNFKDLQA-------YPGCTREETLELQ-------------------- 810
Query: 702 AFKHVFWDIQNLAYK----YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
K V D++N A K + DN L MF +G+KG L+ + Q C+G Q+
Sbjct: 811 -VKSVLDDLRNEAGKVCNAHLKNDNKPLIMFNSGAKGALINIAQMVACVGQQNVSG---- 865
Query: 758 RFPHELSCAAWNRLRAGDNTEC--AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
+ R N C AKS V NSF +GL P E F H+++ R+
Sbjct: 866 ---QRIQNGFIGRTLPHFNIGCRDAKS---RGFVANSFFSGLEPEEFFFHTMSGREGLID 919
Query: 816 DNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G + R+LM M DL YD TVR + G+ +VQF Y +G S
Sbjct: 920 TAVKTSETGYMQRKLMKVMEDLAICYDHTVRASDGH-VVQFLYGDDGLSA 968
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 216 bits (549), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 234/972 (24%), Positives = 407/972 (41%), Gaps = 170/972 (17%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAV-------------SEVTNPRLGLPNPTNE 57
+ P ++ + GI + E ++SV + G + + +PR G+ + +
Sbjct: 7 KAPLRMVKKVQFGILSPDEIRRMSVTDGGGIRFPETYEGGRPKIGGLMDPRQGVMDRNSR 66
Query: 58 CSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKE 108
C +C A ++ C GHFG I+ + H F++ K+L +C P IR+
Sbjct: 67 CQTC-AGNQTECPGHFGHIELGKPVFHIGFITKTIKILRCVCFYCSKMLVSPNNPKIREV 125
Query: 109 RQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK 167
QK G +RK V C RN + M + + D D L K K+
Sbjct: 126 VQKSKGQNRKRLAYVYDLCKGRNICEGGDEMDIQKDNPD-----------DPSLQKNQKQ 174
Query: 168 LPDDYWGFIP------FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILS 217
+ P D E V + + VLS ++V +LK + + E L
Sbjct: 175 GHGGCGRYQPSIRRSGLDLTAEWKHVNEDSQEKKIVLSAERVWEILKHI--TDEECRTLG 232
Query: 218 KDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE- 269
D F + PV P + R V + + + D+ T L ++ I
Sbjct: 233 MDPQFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIIKSNNELIRN 288
Query: 270 -----LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWI 313
+H++ + +K+ + H L ++ +K ++ K+ + G I
Sbjct: 289 EQAGAAAHILSENVKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKS-RLKGKEGR--I 345
Query: 314 KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL 373
+ ++GKR D R V+T DPN+++ ++G+P +A+ + E + +N++++ +
Sbjct: 346 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFDKMHELVRRGN 405
Query: 374 LE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 406 SQYPGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHK 461
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+
Sbjct: 462 MSMMGHRVKVLPWST-FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQI 520
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKD 539
I Q+ + ++ + QD+LTA + + V + QM L MF P + P I K
Sbjct: 521 ITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPQPAILK--PK 578
Query: 540 SVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------S 579
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 579 PLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELMMGILCKK 638
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L +V Y Q V+ WL + G ++ + D ++
Sbjct: 639 TLGTSAGSLLHICYLELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDTIADPNTYM--- 695
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 696 ---EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDA 743
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 744 RDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPF 795
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSR 810
FR PH + Y P + VENS+L GL P E + H++ R
Sbjct: 796 GFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 839
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G + T E
Sbjct: 840 EGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLAGETVEF 898
Query: 869 GDQPVGSLSACA 880
+ P LS A
Sbjct: 899 QNLPTVKLSNKA 910
>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_ANIW93I24]
Length = 1264
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 245/1008 (24%), Positives = 433/1008 (42%), Gaps = 145/1008 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ L E+G+P +A +L I E + WN E+L + I+ G
Sbjct: 318 GKRVDFSSRTVISPDPNLDLGEVGVPTSIASKLTIPEIVTEWNIEKLKKLVINGPNTFPG 377
Query: 378 ELYVCRKGGLVRIRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G V+IR + LE+G ++ R L+DGD+VL NR PS+H S++A
Sbjct: 378 VNYIVRPDG-VKIRLDFVEDTLQVANQLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAH 436
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+VLP ++P C P++ DFDGD ++ ++PQ+ AR E L+ + +QLI+ + G
Sbjct: 437 HVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLISPRFG 495
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQ 546
++ +D +T A+LL +D L+ + M + + P I K S+++GKQ
Sbjct: 496 GPIIGALRDFITGAYLLTKDDTTLTKQEFSNYAMLGGYDEKLPEPKI-KNKNGSLYTGKQ 554
Query: 547 LFSMLLPPDFEYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIK 594
LFS+ LP DF + S KDV I G+L+S + + + ++ + K
Sbjct: 555 LFSLFLPSDFNFVMTSKWSRGTNGKQKDVVIKNGELVSGVIDKTGIGAEEPESILHRIAK 614
Query: 595 RY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
Y +K FL + ++ ++++ G + SDL L S + IL D L+E D
Sbjct: 615 DYGNEKANKFLNSVLIIIKQFITDYGFSYGYSDLEL-SEKDRQAILTD-----LKETYDK 668
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
++V + L + + + + ++YE R A +A + A NL
Sbjct: 669 V--ADIIVQKNKGTLKGLRGMTIAETAEAK-ITYELAR--ARDRAGITAN-------SNL 716
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRA 773
A DN+ M G++G+ L + Q + LG Q R S + +
Sbjct: 717 A-----DDNAGKIMATTGARGSALNVGQMAGALGQQSRRGK---RLHTGYSNRTLSHFKE 768
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMF 830
D+ + ++ S +F GL+ LE F H++ R+ D A G + RRL+
Sbjct: 769 HDDNPDSHGFVKS-----NFRDGLSVLEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLIN 822
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ-------------PVGSLS 877
+ YDGTVR+ +G+ I+QF Y +G + G+ GS +
Sbjct: 823 AFEHIRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGEAFNINRLIESESIIDSGSKA 881
Query: 878 A----CAISEAAYSALDQPISLLETSPLLN-------LKNVLECG-----SKKSNADQTM 921
+IS+ + ++ + L N L+NV + G K Q +
Sbjct: 882 TKDEITSISKKYTKVFNPKLTSMVNDGLHNSKLSKEGLENVCKKGLELYDKSKVEPGQAV 941
Query: 922 SLFLSNKLGK-----RRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPW 976
+ + +G+ F + KN L L I+ P T SM +
Sbjct: 942 GIVTAQSIGEPGTQMTLRTFHTAGIAEKN--VTLGLPRIIELVDARKKPSTPSMDIYLDK 999
Query: 977 ICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAA-RTELKISVPDMLISNKDCS--SINMQK 1033
K I + + ++ D L RQ + +T++ +SV ++ + N+ CS I
Sbjct: 1000 DSKSSKEKAIQIAREILQTTVADLLIRQAETDYQTKITLSVDNVRLKNRGCSLDDIMTAL 1059
Query: 1034 ECNDAF-------CVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWK 1086
E N F +T+ +V D+ T+ + + +LKT VKG +I+++ + +
Sbjct: 1060 ETNKKFELKLDNNIITLQLV-----AESDVATV-VALRNKVLKTTVKGVPDIERITLKEE 1113
Query: 1087 DKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFC 1146
+ G+ ++ + S + ++ +D +N+
Sbjct: 1114 N------------GDWLIQTTGSNLAKVI------------VVKGVDKNNVRTNNVFEIS 1149
Query: 1147 LAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHS 1206
GI+A + L++ + + G + +L++VA+ + G + G+A
Sbjct: 1150 TVLGIEAARTSLINELKATLENQGLEVDVRYLMLVADLMCHKGYLQQIGRHGIA-----G 1204
Query: 1207 SVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
S S +A F + AAK G ++ L+G + + G + +G+G
Sbjct: 1205 SKDSVLARAAFEITVPTIANAAKLGEIEELKGITENVIVGSLIPIGSG 1252
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 231/936 (24%), Positives = 396/936 (42%), Gaps = 146/936 (15%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G N + C +C +
Sbjct: 18 VQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRSARCETC-HRTIN 76
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG IK + H FL K+L +C P IR+ K G RK
Sbjct: 77 ECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIREILDKSEGHPRK 136
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV---EIDEKLSKKNKKLPDDYWGF 175
V C R + D+ + + ++ ++ + + W
Sbjct: 137 RMAHVYDIC----------KRINICENDIGEEITGHIGCGRYQPRIRRQGLGMIGE-WKH 185
Query: 176 IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI--REEFILSKDAPFLKCFPVTPNNH 233
+ D+Q+ + +R + + K++S D D +I + D L C PV P +
Sbjct: 186 VDEDSQETTIVLTADRVLENFKRIS----DEDCAILGMDPKYARPDWMILTCLPVPPPSV 241
Query: 234 RVTEVPHAFSHEKKLFFDNWTRHLK-----KMVDYRGRDIELSHLVQDCLK--ISKLHLD 286
R V FS + D +K ++ G + E+ + L+ I + ++
Sbjct: 242 RPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGENDEIIDQKINLLQSHIGTMMMN 301
Query: 287 KSSR-----KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
S R S ++ + + G I+ ++GKR D R ++T DPN+++ ++
Sbjct: 302 HSKRFPFSHHKSGQIIKSIKTRLEGREG--RIRGNLMGKRVDFSARTIITPDPNLRIDQV 359
Query: 342 GIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGEL-YVCRKGG----LVRIRRIDAL 396
G+P +A+ + E + N E++ L+++GE Y+ R+ L +++ L
Sbjct: 360 GVPRIIAQNMTFPEIVTPVNIEKMQ-----ELVQRGEAKYLIRENADRIDLKYVKKNPVL 414
Query: 397 ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
E+GD + R + DGD+V++NR PS+ ++ VKVLP S+ +NP C SP++ +FDGD
Sbjct: 415 EIGDKVERNIRDGDLVVVNRQPSLRKEDMMGHRVKVLPWPSI-RLNPSCASPYNANFDGD 473
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQ 516
++ + PQ++ R E+ ++ +Q+I Q+ + ++ + QD+L L + V L Q
Sbjct: 474 EMNMHFPQSLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFLQKEQ 533
Query: 517 MQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFP 561
M L MF P + P I K +W+GKQLF++++P PD E P
Sbjct: 534 MMNLLMFLPTWDGKMPKPAILK--PRPLWTGKQLFTLIIPGNVNMMRTHSTHPDDEDEGP 591
Query: 562 SK-------DVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLC 612
K V I G+L+ L +L + +V Y Q V+
Sbjct: 592 YKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVIN 651
Query: 613 EWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK 672
WL G ++ + D+ LA H Q N Q + ++ + +
Sbjct: 652 NWLLYEGHSIGIGDM-LADH------------------QTYLNIQATIQNAKEDVI---- 688
Query: 673 DSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ----NLAYKYGSKDNSLLAMF 728
E + Q + L E L Q + + +D Q +LA ++ N+L AM
Sbjct: 689 --EVLQRSQNDEL--EPTPGNTLRQTFENQVLRIIYDAQEQASDLAKNSLTEYNNLKAMA 744
Query: 729 KAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKS 782
AGS G+ + Q C+G Q+ P FR PH + DN ++
Sbjct: 745 VAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHFIK---------DDNGPESRG 795
Query: 783 YIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGT-LTRRLMFFMRDLCTAYDG 841
+ VENS+++GL P E + H++ R+ + T + R+L+ M + YDG
Sbjct: 796 F-----VENSYVSGLTPSEFYFHAMAGRELLIYETRIKSETGIIRQLVKGMESVMVHYDG 850
Query: 842 TVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
TVRN+ G +I+QFSY +G + + E+ P LS
Sbjct: 851 TVRNSAG-RILQFSYGEDGLAAESVELQKMPTVKLS 885
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1770
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 210/875 (24%), Positives = 384/875 (43%), Gaps = 101/875 (11%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PR+G + +C +CG + C GHFG I+ + H FL + K+L IC
Sbjct: 54 VGGLMDPRMGTIDRNYKCQTCG-EGPGDCPGHFGHIELARPVYHAGFLVKVKKILECICV 112
Query: 101 KCKTIRKERQ--------KGAGSSRKEQPRVCKYC-----VRNPAQWYPRMRFKLSSKDL 147
C ++ + K A + ++ V +YC + + K
Sbjct: 113 NCGKLKADIGDDTFRVLVKRADNPKRRLQIVWEYCKGKMLCESDDMKEEEEDPEKPQKPS 172
Query: 148 SGKTAIIVEIDEK------LSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSY 201
G I + K L K +K DD ++ +P +++L+ +
Sbjct: 173 HGGCGHIQPLIRKDGLKLFLVYKKRKGDDD---------DEDVKLAQPEKRLLTAAEAHS 223
Query: 202 LLKDVDPSIREEFILSK-----DAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRH 256
+L+ + S LS+ + L PV P R + + + E L +
Sbjct: 224 ILRKIPTSDLRLMGLSERYARPEWMILSVIPVPPPQVRPSIMSDSLRSEDDLTY-KLADI 282
Query: 257 LKKMVDYRGRDIE--LSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNS------S 308
LK R D E +H+V + ++ + H+ ++ D+ Q + + S S
Sbjct: 283 LKTSATLRKHDAEGAPAHVVSEIEQLLQFHV--ATYMDNEIAGQPRAMQKSGRPVKAIRS 340
Query: 309 GLRW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER 364
L+ ++ ++GKR D R V+TGDPNI L E+G+P +A L ER+ +N ER
Sbjct: 341 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNIALDEVGVPRSIAMTLTYPERVTKYNLER 400
Query: 365 LSVCISFRLLE-KGELYVCRKGGL---VRIRRID-ALELGDIIYRPLTDGDIVLINRPPS 419
L+ + +E G Y+ R G +R +R D +L++G ++ R L DGD VL NR PS
Sbjct: 401 LTELVRNGPVEYPGARYIIRDTGERIDLRYKRGDVSLQIGWVVERHLRDGDYVLFNRQPS 460
Query: 420 IHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALD 479
+H S+++ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL E+ +
Sbjct: 461 LHKMSMMSHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELKEIAWVP 519
Query: 480 KQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISK 538
+Q+++ Q+ + ++ + QD+L + + + + L +Q + ++ P P I
Sbjct: 520 RQIVSPQANKPVMGIVQDTLCGIYKMTQRDIFLDWPLVQNILLWVPDWDGTIPHPCIIKP 579
Query: 539 DSVWSGKQLFSMLLPP-------DFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ ++++P + P D + I G+++ + +
Sbjct: 580 KPMWSGKQIIALVIPQGINLANGNLSIGNPINDDALIIENGEIMMGIFNKGIVGSSAGGL 639
Query: 590 QYLIKRYR--DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+++ R R + D + Q V+ WL G ++ + D + K I +
Sbjct: 640 IHVVFRERGPEVTRDMIGGIQTVVNYWLFHNGFSIGIGD------TVPDKPTEKSIMTNI 693
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
A++ + +V+ + L+ + + R S+E + L+Q + K
Sbjct: 694 ETAKEDV---RKVVEEAVKGLLKPRPGMTIRE------SFEASVNGILNQVRDKSGKSAQ 744
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
++ +DN++ M AGSKG+ + + Q S +G Q+ R P
Sbjct: 745 QSLK--------RDNNVKTMVTAGSKGSFINISQMSAMVGQQNVEGQ---RIPFGFKHRT 793
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 794 LPHFTKDDFSPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 848
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ M D+ AYDGT+RN+ G+ ++Q++Y +G
Sbjct: 849 RRLVKAMEDVMVAYDGTIRNSLGD-VLQWTYGEDG 882
>gi|413926574|gb|AFW66506.1| putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 554
Score = 215 bits (547), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 177/583 (30%), Positives = 270/583 (46%), Gaps = 82/583 (14%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL------SVCISFRLLEKGELY 380
R V+TGDP I L +G+P +VA+R+ E++ N RL +C+++R + Y
Sbjct: 15 RSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQDVVDKGLCLTYR--DGQATY 72
Query: 381 VCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
G + L++G I R + DGD+V +NRPPS H HSL A V V
Sbjct: 73 AITVGS----KGYTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYVHD-DHTVK 127
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
INPL C PF DFDGDC+H Y PQ++ A+ E EL ++++QLI+ SG+ L LG DSL
Sbjct: 128 INPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQLGNDSLV 187
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A + ++L L QL MF P L+P + K W+ Q+ P + T
Sbjct: 188 AMKAMSHTTMLHKELA-NQLAMFVPFSLLAPAVIKPVPS--WTISQIVQGAFPANL--TC 242
Query: 561 PSKDVYISGGKLISAE-GSSWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVR 618
+ +I + G ++D +L +++ K L FL + +L E+L +
Sbjct: 243 QGDTHLVRDSTIIRLDLGKESVQDSFPDLVSSILREKGPKEALQFLNVLEPLLMEFLLLD 302
Query: 619 GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
G+++SL D + K L L EAQ Q L++ E +R
Sbjct: 303 GLSISLRDFNVP------KAL-------LEEAQKDIRNQSLIL-------------EQSR 336
Query: 679 SLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLK 738
+ + + + + K+V I + K+ + L + + ++ K
Sbjct: 337 CSTSQFVEFRVENN----------LKNVKQQISDSVGKF----SDLGLLIDPKKEASMSK 382
Query: 739 LVQHSLCLGLQ--HSLAPLSFRFPHELSCAAWNR-LRAGDNTECAKSYIPSA--VVENSF 793
+VQ +GLQ S R + N+ L GD Y P A +V++S+
Sbjct: 383 VVQQVGFVGLQLYREGKLYSRRLVEDCFTNFVNKHLAIGDE------YPPEAYGLVQSSY 436
Query: 794 LTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQI 851
GLNP E IH++++R++ + L PGTL + LM +RD+ YDGTVRN N I
Sbjct: 437 FHGLNPYEELIHAISTREAMIRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSI 496
Query: 852 VQFSYNIE-----GTSTPTGEIGDQPVGSLSACAISEAAYSAL 889
+Q Y + + P GE PVG L+A AIS AY A+
Sbjct: 497 IQLKYGEDDETDSSSVVPPGE----PVGVLAATAISNPAYKAV 535
>gi|225465870|ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 198/705 (28%), Positives = 334/705 (47%), Gaps = 89/705 (12%)
Query: 7 EEGLEVPSGILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAK 64
E+ + G ++GI G++T E SV + I S++TNP LGLP +C SCG
Sbjct: 3 EDSSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTA 62
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP +S++ ++L+ +C KC IRK + G + + +
Sbjct: 63 EPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNNGITEQ----LL 118
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEE 184
C ++ Q R F+ + + A +E+ K+ +++ D +W F+ +
Sbjct: 119 APCCQDSPQVSVR-EFRPT------EGACFLEL--KIPSRSRP-KDGFWDFLARYGYRYG 168
Query: 185 NSVKPNRKVLSCKQVSYLLKDVDPSIREEFI----LSKDAPFLKCFPVTPNNHRVTEVPH 240
+++ ++L +V +L+ + R++ + +D L+ PV PN V ++
Sbjct: 169 HNLS---RILLPSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISD 225
Query: 241 AFSHEKKLFFDNWTRHLKKMV--------------DYRGRDIELSHL---VQDCLKISKL 283
S + D LKK++ ++ IE ++L ++ L++
Sbjct: 226 GVS---IMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGT 282
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV-VLGKRNDDCF--RMVVTGDPNIKLKE 340
K+SR S + R + + + SS W++ + L R F R V+TGD ++ E
Sbjct: 283 A--KTSR--SLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKRVNE 338
Query: 341 IGIPCQVAERLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRID 394
IG+P ++A+R+ ER+N N + L +C+++R + Y R+G +
Sbjct: 339 IGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYR--DGLSTYSLREGS----KGHT 392
Query: 395 ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFD 454
L G +++R + DGDIV INRPP+ H HSL AL+V V V INPL C P DFD
Sbjct: 393 FLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHD-DHTVKINPLICGPLSADFD 451
Query: 455 GDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSH 514
GDC+H + PQ++GA+ E+ EL +++KQL++ SG L L DSL + +L E L+
Sbjct: 452 GDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLFE-RYFLNK 510
Query: 515 LQMQQLQMFCPHRFLSPDIFKIS-KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLI 573
QQL MF P + K W+ Q+ LP F+ + +IS ++
Sbjct: 511 AAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCI--GERHWISKSAIL 568
Query: 574 SAEGSSWLRDYEGNLFQYLI---------KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSL 624
DY ++ Q L+ ++ ++VL F + Q +L E L G +VSL
Sbjct: 569 KV-------DYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSL 621
Query: 625 SDLYLASHSCS--RKILMD--EIFYGLREAQDTCNFQQLMVDSHM 665
D + S +K + D + Y LR + QL ++H+
Sbjct: 622 EDFSIPSEVTQNIQKNVEDISSLLYNLRSMYN--ELLQLQAENHL 664
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/514 (26%), Positives = 241/514 (46%), Gaps = 25/514 (4%)
Query: 787 AVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVR 844
++ + F GL+P E +HS+++R+ + L PGTL + LM +RD+ YDGTVR
Sbjct: 743 GLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVR 802
Query: 845 NAYGNQIVQFSYNIEGTSTPTGEI-GDQPVGSLSACAISEAAYSA-LDQPISLLETSPLL 902
N N I+QF Y ++ + P +PVG L+A A+S AY A LD S + L+
Sbjct: 803 NVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELM 862
Query: 903 NLKNVLECGSKKSN--ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSM 960
K +L C N D+ + L+L++ R++ E A VKN L+ L D M
Sbjct: 863 --KEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFM 920
Query: 961 IIYSPQ---TGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKIS-- 1015
I Y Q +GS + + + H H+ K +++ + + + R + +
Sbjct: 921 IEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGPF 980
Query: 1016 VPDMLISNKDCSSI--NMQKECNDAFCVTVMIVENFKRTSID--LETIQMWVMPFLLKTV 1071
+++S ++C + + Q + +D C+ N + +++ L + + P LL+T+
Sbjct: 981 FKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGN-RDDNLEQILHILAHKICPVLLQTI 1039
Query: 1072 VKGFREIKKVDILWKDKQKASKSHD---DSFGELYLRVSMSGQC--HITSLWSALMNDCH 1126
+KG + V+I+W + + GEL L + + W +++ C
Sbjct: 1040 IKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACL 1099
Query: 1127 QIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLS 1186
++ +ID RS P I+ GI + L +++ K +L EHL+++AN+++
Sbjct: 1100 PVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMT 1159
Query: 1187 ATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWG 1246
G +G N+ G + ++ PF +A P F KA++ D+L V + WG
Sbjct: 1160 CAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWG 1219
Query: 1247 KVPSVGTGGHFDIIYSGE--GRTLSKPVDVYNLL 1278
K +VGTG FD+++ + G +D+Y+ L
Sbjct: 1220 KHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFL 1253
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 26/229 (11%)
Query: 1229 KAGAVDNLQGSVDALGWG------KVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPV 1282
+ AV N Q S + GWG ++PS G + E T S+ S P
Sbjct: 1575 RGSAVKNDQ-SESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSRPE 1633
Query: 1283 SSK---------QNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKSWT 1333
S+ +N+K + K QG ++D D++ G+ + + +
Sbjct: 1634 GSRGWGSNNTEWKNKKNRPNKPQGPLND-------DYSAGGIFTATRQRVDIFTSEEQDI 1686
Query: 1334 YNDVLRLSNALKKILHK--YSIGQRLSEKDKTTVIRALYF-HPRRNEKLGIEPPDIEVTY 1390
DV + ++++I+H+ Y+ G LS D++ ++ ++ HP + K+G + V+
Sbjct: 1687 LLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSR 1746
Query: 1391 HPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
H SRCF +V DG EDFSY KC+ ++ P+ AE + K+ R
Sbjct: 1747 HSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFR 1795
>gi|219662988|gb|ACL30983.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-14 [Zea
mays]
Length = 352
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 202/365 (55%), Gaps = 55/365 (15%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
E P IL I + T T+ EKLS M I VS+VT+P+LGLPN + +C +CG++ + C+
Sbjct: 6 EPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQRGRDCD 65
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRV---CKYC 127
GHFG K T+ +PYF+ D+ LN ICP C + R +G + R E+ +V CKYC
Sbjct: 66 GHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPR----EGIDTKRLEREKVQATCKYC 121
Query: 128 VRNPAQWYPRMRFK-LSS-------------KDLSGKTAIIVEIDEKLSKKNK------K 167
++ ++ YP + FK LSS + + +I+ E +++ ++K
Sbjct: 122 SKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLEG 181
Query: 168 LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFP 227
LP D+W F+P + +Q ++++ + +LS QV Y+LK DP + ++F+ ++ FL C P
Sbjct: 182 LPLDFWDFVPSENKQVQSNM--TKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLP 239
Query: 228 VTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR-DIELSH-------------L 273
VTPN HRV E+ + + +L FD+ T+ K+MVD R D H
Sbjct: 240 VTPNCHRVVEIGYGLP-DGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSR 298
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
V +CLK SKL+ K+ + S +++ G++W+KDVVL KR+D+ FR ++ GD
Sbjct: 299 VSECLKSSKLYSKKADGETS-----------TDTYGMKWLKDVVLSKRSDNVFRSIMVGD 347
Query: 334 PNIKL 338
P IKL
Sbjct: 348 PKIKL 352
>gi|242064052|ref|XP_002453315.1| hypothetical protein SORBIDRAFT_04g003760 [Sorghum bicolor]
gi|241933146|gb|EES06291.1| hypothetical protein SORBIDRAFT_04g003760 [Sorghum bicolor]
Length = 554
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 169/580 (29%), Positives = 266/580 (45%), Gaps = 76/580 (13%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL------SVCISFRLLEKGELY 380
R V+TGDP I L +G+P +VA+R+ E++ N RL +C+++R + Y
Sbjct: 15 RSVLTGDPYIGLGVVGLPSEVAKRMTFEEQVTDININRLQEVVDKGLCLTYR--DGQATY 72
Query: 381 VCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
G + L++G I R + DGD+V +NRPPS H HSL A V V
Sbjct: 73 AITVGS----KGHTTLKVGQTISRRIVDGDVVFLNRPPSTHKHSLQAFYAYVHD-DHTVK 127
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
INPL C PF DFDGDC+H Y PQ++ A+ E EL ++++QLI+ SG+ L LG D L
Sbjct: 128 INPLMCGPFSADFDGDCVHIYYPQSLAAKAEALELFSVERQLISSHSGKVNLQLGNDCLV 187
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A + + +VL L QL MF P L+P + K W+ Q+ LP
Sbjct: 188 AMKAMSDRTVLHKEL-ANQLAMFVPFSLLAPAVMKPIPS--WTITQIVQGALPAKLTCQG 244
Query: 561 PSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGM 620
+ V S + + S + + L ++ + L FL + +L E+L + G+
Sbjct: 245 DTHLVRDSTIIKLDLDKESVQDSFPDLVSSILREKGPREALQFLNVLEPLLMEFLVLGGL 304
Query: 621 TVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSL 680
++SL D + K L++ E+ +++
Sbjct: 305 SISLRDFNVP------KALLE---------------------------------EAQKNI 325
Query: 681 QGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLV 740
Q + L E+ R + SQ ++ ++ Y K + L + + ++ K+V
Sbjct: 326 QNQSLVLEQSRCST-SQFVELRVENNLKSVKQQISDYVGKFSGLGLLIDPKKEASMAKVV 384
Query: 741 QHSLCLGLQ--HSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTG 796
Q +GLQ S R + + N+ ++ Y P A +V++S+ G
Sbjct: 385 QQVGFVGLQLYREGKLYSRRLVEDCFSSFVNK-----HSAIGDEYSPEAFGLVQSSYFHG 439
Query: 797 LNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
LNP E +H++ +R++ + L PGTL + LM +RD+ YDGTVRN N I+Q
Sbjct: 440 LNPYEELVHAICTRETMIRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRNICSNSIIQL 499
Query: 855 SYNIE-----GTSTPTGEIGDQPVGSLSACAISEAAYSAL 889
Y + ++ P GE PVG L+A AIS AY A+
Sbjct: 500 KYGEDDEADSSSAVPPGE----PVGVLAATAISNPAYKAV 535
>gi|2088656|gb|AAB95288.1| putative DNA-directed RNA polymerase II subunit [Arabidopsis
thaliana]
Length = 888
Score = 214 bits (545), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 239/957 (24%), Positives = 411/957 (42%), Gaps = 151/957 (15%)
Query: 78 FPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPR 137
P I HP ++++ ++L+ +C KC I+K + G+S R+ C +Q
Sbjct: 28 LPVPIYHPAHVNELKQMLSLLCLKCLKIKKAK----GTSGGLADRLLGVCCEEASQ---- 79
Query: 138 MRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQEENSVKPNRKVLSC 196
+S KD + A +E+ KL +++ P W F+ + + + +P L
Sbjct: 80 ----ISIKDRASDGASYLEL--KLPSRSRLQPG-CWNFLERYGYRYGSDYTRP----LLA 128
Query: 197 KQVSYLLKDVDPSIREEFILSKDAP----FLKCFPVTPNNHRVTEVPHAFS----HEKKL 248
++V +L+ + R++ P L+ PV PN V E FS ++
Sbjct: 129 REVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEASDGFSTMSVDPSRI 188
Query: 249 FFDNWTRHLKKMVDYRGRDIEL-SHLVQ--DCLKISKLHLDKSSRKDSAEVRQKKNIDI- 304
+ + + + R + SH + + ++ +L +A +NID+
Sbjct: 189 ELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAKAA-----RNIDMR 243
Query: 305 -------SNSSGLRW---IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
+SS W ++ + + K + R V+TGD + E+GIP ++A+R+
Sbjct: 244 YGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFE 303
Query: 355 ERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTD 408
ER++ N L +C+S+ + Y R G + L+ G +++R + D
Sbjct: 304 ERVSVHNRGYLQKLVDDKLCLSY--TQGSTTYSLRDGS----KGHTELKPGQVVHRRVMD 357
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
GD+V INRPP+ H HSL AL V V + V INPL CSP DFDGDC+H + PQ++ A
Sbjct: 358 GDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDGDCVHLFYPQSLSA 416
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRF 528
+ E+ EL +++KQL++ +G+ +L +G DSL + +++E V L QQL M+
Sbjct: 417 KAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKATAQQLAMYGSLSL 475
Query: 529 LSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLR----- 582
P + K SK W+ Q+ + P G +GS L+
Sbjct: 476 PPPALRKSSKSGPAWTVFQILQLAFPERLS----------CKGDRFLVDGSDLLKFDFGV 525
Query: 583 DYEGNLFQYLI-----KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
D G++ ++ ++ + L F + Q +L E L G ++SL DL S SR
Sbjct: 526 DAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDL-----SMSR- 579
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ M+ + + E + + LSY +
Sbjct: 580 -------------------------ADMDVIHNLIIREISPMVSRLRLSYRDELQ----- 609
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
++ ++ +A + K S+ + S + KLVQ + LGLQ S +
Sbjct: 610 -----LENSIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQTGFLGLQLSDKKKFY 664
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
A + + + G + +V+ F GL+P E HS+ +R+ +
Sbjct: 665 TKTLVEDMAIFCKRKYGRISSSGD----FGIVKGCFFHGLDPYEEMAHSIAAREVIVRSS 720
Query: 818 ADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG--EIGDQPV 873
L PGTL + LM +RD+ DGTVRN N ++QF Y ++ G E G +PV
Sbjct: 721 RGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAG-EPV 779
Query: 874 GSLSACAISEAAYSALDQPISLLETSPLLN-----LKNVLECGSKKSNA--DQTMSLFLS 926
G L+A A+S AY A +L++SP N +K VL C N D+ + L+L+
Sbjct: 780 GVLAATAMSNPAYKA------VLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLN 833
Query: 927 NKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVR 983
+R E A V+N L + L D ++ + + G+ +C +++
Sbjct: 834 ECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEHCCKIGT------SVCRIYIK 884
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 234/939 (24%), Positives = 411/939 (43%), Gaps = 154/939 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIG----AVSEVTNPRLG-LPNP----TNECSSCGAKDRKA-- 68
I LGI + E K+SV E G + E P+LG L +P ++ +SC DR
Sbjct: 21 IQLGILSPKEIRKMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGAIHQSASCQTCDRNMNE 80
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFG I I H FL K+L +C C + P++ K V
Sbjct: 81 CPGHFGHIDLAKPIFHIGFLMKTIKILRCVCFYCSKLL---------VSPSNPKIKKILV 131
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDE-----------KLSKKNKKLPDDYWGFIP 177
+ Q PR R L G ++I+ K+ ++ +L + W +
Sbjct: 132 ISKGQ--PRTRMALVHDLCKGINICEIDIETTGHVGCGRYQPKIRRQGLELIGE-WKHVD 188
Query: 178 FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-------LKCFPVTP 230
D Q+ VL+ +V + K + S + IL D + + C PV+P
Sbjct: 189 EDWQE-------TNLVLTAGRVWEIFKHI--SDEDCLILGMDPKYARPDWMIITCLPVSP 239
Query: 231 NNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG---RDIE---LSHLVQDCLKISKLH 284
R V H + ++ ++ TR L +V R+++ +H++ + +++ + H
Sbjct: 240 PAVRPAVVMHGSASKQ----NDLTRKLADVVKANEELLRNVQSGAAAHIIAENIELLQFH 295
Query: 285 LDKSSRKD-----SAEVRQKKNIDISNSSGLRW----IKDVVLGKRNDDCFRMVVTGDPN 335
+ D A++ + I +S + L I+ ++GKR D R V+T DPN
Sbjct: 296 VATMMINDLEGLPVAQLESGRPI-VSIKARLEGRDGRIRGNLMGKRVDFSARTVITPDPN 354
Query: 336 IKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGG----LVRIR 391
+++ ++G+P +A+ + E + S+N E++ + + G Y+ R+ G + ++
Sbjct: 355 LRIDQVGVPRSIAQNITFPEIVTSFNIEKMQELVQ----QGGAKYLTRENGNRFDIRTVK 410
Query: 392 RIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHG 451
L+LGD + R + DGD+V+ NR PS+ ++ VKVLP +S +NP C PF+
Sbjct: 411 EYPVLKLGDKVERSIRDGDLVVCNRQPSVQKVAMTGNRVKVLPWASF-RLNPCCTYPFNK 469
Query: 452 DFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVL 511
D ++ ++PQ++ R E+ ++ +Q+I Q+ + ++ + QD+L + L + V
Sbjct: 470 YLYSDEMNIHVPQSMETRAEVENILLTPRQIITPQANKPVMGIVQDTLVGTYKLTKRDVF 529
Query: 512 LSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDF 556
L QM L MF P + P I K +W+GKQLF++++P PD
Sbjct: 530 LEKEQMMNLLMFLPTWDGKMPKPAILK--PRPLWTGKQLFTLIIPGNVNMMITHSTHPDD 587
Query: 557 EYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-A 607
E P K V I G+L+ L +L + +V Y
Sbjct: 588 EDEGPYKWISPGDTKVMIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNI 647
Query: 608 QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
Q V+ WL G ++ + D+ + R+ MD I + +A++ + +++ S +
Sbjct: 648 QTVINNWLLYEGHSIGIGDMLV-----DRQTYMD-IQATIEKAKE--DVIEVIQKSRNDE 699
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
L + ++L+ + +++ +DA +N ++ N+L AM
Sbjct: 700 LEPTPGNTLQQTLENQ-----------VNRILIDARNETGGSAKNSLTEF----NNLKAM 744
Query: 728 FKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAK 781
AGS G+ + + Q C+G Q+ P FR PH + D ++
Sbjct: 745 VVAGSSGSNVNISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK---------DDFGPESR 795
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTA 838
+ VENS+++GL P E + H++ + + D A G + R L+ M +
Sbjct: 796 GF-----VENSYVSGLTPSEFYFHAMDRK--ALIDTAVKTANTGYIQRSLIKAMESVMVH 848
Query: 839 YDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
YDGTVRN+ G +I+QFSY +G S + E+ P +LS
Sbjct: 849 YDGTVRNSAG-RILQFSYGGDGLSAESVELQKMPTVNLS 886
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 79/164 (48%), Gaps = 14/164 (8%)
Query: 1106 VSMSGQCHITSLWSALMNDCHQIMDM-----IDWTRSHPDNIRSFCLAYGIDAGLQFFLT 1160
V+ +G+ + W L D Q+M + +D R++ ++IR G++A +
Sbjct: 1297 VTETGEFEAIAEW-ILETDGTQLMRVLSERDVDPVRTYSNDIREIFSVLGVEAARKALEK 1355
Query: 1161 NLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNP 1220
+ + + G N+ HL ++ + ++ATG+ + ++ ++ R+ +S ++
Sbjct: 1356 EMNNLLQFYGLNVNHRHLALLCDVMTATGQLMPIS----SIDRQDTSA---LMKCTVKET 1408
Query: 1221 GASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGE 1264
+ ++AA +D L+G L G++P +GTG FD+I E
Sbjct: 1409 VSVLLEAAGHAEIDPLRGVSVNLILGQLPRMGTGC-FDLILDAE 1451
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 231/972 (23%), Positives = 402/972 (41%), Gaps = 184/972 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 16 VQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLQGLMDPRQGVMDRNSRCQTC-AGNQT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H FL+ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKML---------VSPANPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
+++ Q R+ F DL I DE +K+ P+
Sbjct: 126 MKSKGQPRKRLTFVY---DLCKGKNICEGGDEMDIQKDNDEPNSQQPRKQGHGGCGRYQP 182
Query: 173 ------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
W + D+Q+++ S LS ++V +L+ + + E +IL DA
Sbjct: 183 NIRRSGLDLTAEWKHVNEDSQEKKIS-------LSAERVWEILRHI--TDEECYILGMDA 233
Query: 221 PF-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE---- 269
F + PV P + R V + + + D+ T L ++ +
Sbjct: 234 TFARPDWMIMTVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIIKSNNELVRNEQA 289
Query: 270 --LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV 316
+H++ + +K+ + H L ++ +K ++ K + G I+
Sbjct: 290 GAAAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGN 346
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +++ + +
Sbjct: 347 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQY 406
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S+
Sbjct: 407 PGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSM 462
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 463 MGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITP 521
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V L QM L MF P + P I K +W
Sbjct: 522 QANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMK--PKPLW 579
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLR 582
+GKQ+FS+++P PD E P K + K++ G L
Sbjct: 580 TGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPFKWISPGDTKVMVEHGELVMGILCKKTLG 639
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 640 TSAGSLLHICMLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL------ 693
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 694 EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDK 744
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 745 T--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 796
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 797 KRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 840
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E +
Sbjct: 841 IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNL 899
Query: 872 PVGSLSACAISE 883
P LS A +
Sbjct: 900 PTIKLSNKAFEK 911
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 213 bits (543), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 238/977 (24%), Positives = 392/977 (40%), Gaps = 195/977 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 18 VQFGILSPDEIRRMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGVIDRSARCQTC-AGNMN 76
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F+ K+L +C P I++ K G RK
Sbjct: 77 ECPGHFGHIDLAKPVYHIGFIQKTMKILRCVCFYCSKLLVSPNNPKIKEILVKSKGQPRK 136
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDL-SGKTAIIVEIDEKLSKKNKK---------- 167
V C K++ G I + DE +SK+ KK
Sbjct: 137 RMAHVYDLC---------------KGKNICEGGDEIDIGKDEDISKEGKKGIGHGGCGRY 181
Query: 168 LPD---------DYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSK 218
P W + D+Q++ + VL+ ++V + K + S E IL
Sbjct: 182 QPTIRRQGLEMTGEWKHVNEDSQEK-------KIVLTAERVWEIFKHI--SDEECAILGM 232
Query: 219 DAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG------ 265
D + + C PV P R V H + + D+ T L +V
Sbjct: 233 DPKYARPDWMIVTCLPVPPLAVRPAVVMHGSARNQ----DDLTHKLADIVKANNELQRNE 288
Query: 266 RDIELSHLVQDCLKISKLHLDKSSRKDSAEV--------RQKKNIDISNSSGLRWIKDVV 317
+ +H++ + +K+ + H+ DS + R K++ I+ +
Sbjct: 289 QSGAAAHIIAENIKMLQFHVATMVDNDSPGLPRAQQKSGRPIKSVKARLKGKEGRIRGNL 348
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-K 376
+GKR D R V+T DPN+++ ++G+P +A+ + E + +N E++ + +
Sbjct: 349 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIEKMQELVQRGNSQYP 408
Query: 377 GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G Y+ R+ G RID L+ G + R + DGD+V+ NR P++H S++
Sbjct: 409 GAKYIIRENG----DRIDLRFHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPTLHKMSMM 464
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q
Sbjct: 465 GHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQ 523
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWS 543
+ + ++ + QD+L A + + V L QM L MF P + P I K W+
Sbjct: 524 ANKPVMGIVQDTLCAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAILKPRPQ--WT 581
Query: 544 GKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRD 583
GKQLF++++P PD E P K + K++ G L
Sbjct: 582 GKQLFTLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVENGELVMGILCKKTLGA 641
Query: 584 YEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSD------LYLASHSCSR 636
+L + +V Y Q V+ WL G ++ + D YL + +
Sbjct: 642 SAASLLHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDTIADPQTYLDIQATIK 701
Query: 637 KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
K D I +++ SH N + + R ++E Q + L+
Sbjct: 702 KAKEDVI--------------EVIQKSH-NDELEPTPGNTLRQ------TFENQVNRILN 740
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A A K ++ N+L AM AGSKG+ + + Q C+G Q+
Sbjct: 741 DARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRI 792
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVT 808
P FR PH + Y P + VENS+L GL P E + H++
Sbjct: 793 PFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMG 836
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG 866
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G S +
Sbjct: 837 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLSAESV 895
Query: 867 EIGDQPVGSLSACAISE 883
E P LS A +
Sbjct: 896 EFQTMPTVKLSNKAFEK 912
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 213 bits (541), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 229/892 (25%), Positives = 387/892 (43%), Gaps = 133/892 (14%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 INDPRLGTIDRQYNCETC-EEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
I+ A S E R R A W R+ SKD+ A DE+ SK
Sbjct: 114 KIKANT---ADSKFTEALRFRDPKRRFDAIW--RL-----SKDVLVCEADAPADDEEFSK 163
Query: 164 KNKKLPDDYWG------------------FIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
+++K + G + P A E+ +P +KV++ + ++
Sbjct: 164 ESQKG-RSHGGCGNAQPTVRKEGICLVGTWKPSKAMMEDEMAQPEKKVITPTMALNIFRN 222
Query: 206 VDPSIREEFILSKDAP-----FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 260
+ LS D L PV P R + V S + D+ T L ++
Sbjct: 223 ISVEDVRIMGLSNDYARPEWMILTVLPVPPPTVRPSVVMGTTSGARGE--DDLTYKLAEI 280
Query: 261 VDYRG------RDIELSHLVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDISN-SSGL 310
V ++ H++++ + + H+ D A QK N + S L
Sbjct: 281 VRANQNVQRCEQEGAPEHVIREFESLLQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRL 340
Query: 311 RW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS 366
+ ++ ++GKR D R V+TGDPN++L E+G+P A L E + +N E+L
Sbjct: 341 KGKEGRLRQNLMGKRVDFSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQ 400
Query: 367 VCISFRL-LEKGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPS 419
++ L G Y+ R G L +R A +L G + R L DGD +L NR PS
Sbjct: 401 RLVANGPNLHPGARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDDGDYILFNRQPS 460
Query: 420 IHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALD 479
+H S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ +R EL EL +
Sbjct: 461 LHKESMMGHRVRVMPFSTF-RMNLSVTSPYNADFDGDEMNLHVPQGEESRAELAELTLVP 519
Query: 480 KQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKI 536
K +++ Q L+ + QD+L + + L+ Q+ L ++ P P I K
Sbjct: 520 KNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDQVMNLMLWVPDWDGAIPPPAIIK- 578
Query: 537 SKDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SW 580
W+GKQ+ SM P P E P D + I GG+L+ S
Sbjct: 579 -PRPRWTGKQMISMAFPSGLNLLRVDKDGSPLSEKFSPLNDGGLLIHGGQLMYGMLSKKT 637
Query: 581 LRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ G + + Y D + F AQ ++ WL G ++ + D + ++
Sbjct: 638 VGASGGGVIHTIFNEYGPDTCVKFFTGAQTIVGYWLLHNGFSIGIGD------TIPDQLT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALS 696
+++I +R N +Q + + ++A +E+T +L G ++ ++E + S AL+
Sbjct: 692 INKIEEAVR------NRKQEVEE------ITASATENTLEALPGMNVRETFESKVSRALN 739
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A +A +++L N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 740 NARDEAGDATEKSLKDL--------NNAIQMARSGSKGSAINISQMTALVGQQSVEGKRI 791
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 792 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 837
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 838 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 888
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 213 bits (541), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 236/957 (24%), Positives = 396/957 (41%), Gaps = 168/957 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G F P
Sbjct: 127 MKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHFQPSIR 184
Query: 178 -------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------ 224
+ +Q + + + ++S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKQVAEASQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIV 242
Query: 225 -CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDC 277
PV P R V F K D+ T L ++ R E S H++Q+
Sbjct: 243 TVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLADIIKANNELRKNEASGAAAHVIQEN 298
Query: 278 LKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+K+ + H+ D QK K I I+ ++GKR D R V
Sbjct: 299 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 359 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG-- 416
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 417 --ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+
Sbjct: 475 -RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
LTA + + V ++ QM L MF P + P I K +W+GKQ+FS+++P
Sbjct: 534 LTAVRKMTKRDVFITREQMMNLLMFLPTWDGKMPQPCILK--PRPMWTGKQIFSLIIPGN 591
Query: 554 ----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIK 594
PD E P K + K++ G L G+L ++
Sbjct: 592 VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLE 651
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
D F Q V+ WL + G ++ + D + +EI +++A+D
Sbjct: 652 LGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMAIKKAKDDV 705
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL- 713
+N + A + E + L Q + + D ++
Sbjct: 706 ----------INVIQKAHNME-----------LDPTPGNTLRQTFENKVNRILNDARDKT 744
Query: 714 ---AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 745 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK 804
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 805 ----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 848
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 849 TGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 213 bits (541), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 238/957 (24%), Positives = 397/957 (41%), Gaps = 168/957 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 10 VQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 68
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 69 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 119
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
V++ Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 120 VKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIR 177
Query: 178 ---FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------ 224
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 178 RTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIV 235
Query: 225 -CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDC 277
PV P R V + + D+ T L ++ R E S H++Q+
Sbjct: 236 TVLPVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQEN 291
Query: 278 LKISKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+K+ + H+ D QK K I I+ ++GKR D R V
Sbjct: 292 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 351
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 352 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG-- 409
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 410 --ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST- 466
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+
Sbjct: 467 FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 526
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 527 LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGN 584
Query: 554 ----------PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGNLFQY-LIK 594
PD E P K V + G+LI+ L G+L ++
Sbjct: 585 VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELITGILCKKTLGTSAGSLLHICFLE 644
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 645 LGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV 698
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL- 713
+N + A + E E L Q + + D ++
Sbjct: 699 ----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKT 737
Query: 714 ---AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 738 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK 797
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 798 ----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 841
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 842 TGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNLPTVKLS 897
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 213 bits (541), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 220/922 (23%), Positives = 395/922 (42%), Gaps = 150/922 (16%)
Query: 22 LGISTDTEKEKLSVMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFP 79
+ ++ D + ME G + + +PR G + + C +C + C GHFG ++
Sbjct: 1 MSVTNDGGIKYAETMEGGKPKIGGLMDPRQGCVDRGSICQTCSG-NVSNCPGHFGHVELA 59
Query: 80 FTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMR 139
+ H F+ KLL +C C I + Q P++ + + RM
Sbjct: 60 KPVFHIGFMKKTLKLLRCVCFHCSKILVDVQS---------PQIQEILRKTKNDNRRRMM 110
Query: 140 FK----------LSSKDLSGKTAIIVEIDEKLSKKNKKLP---------DDYWGFIPFDA 180
F LS++D G +E K + + P W I ++
Sbjct: 111 FMYEECKSRTECLSNEDQIGGENDTLENKTKRAGCGRYQPRFRRIGLELTAEWKKINEES 170
Query: 181 QQEENSVKPNRKVLSCKQVS---YLLKDVDPS-IREEFILSKDAPFLKCFPVTPNNHRVT 236
Q+ + ++ R + K++S L DP R ++++ + PV P R
Sbjct: 171 QERKITLTAERVLEVFKRISDEDCLSLGFDPRYARPDWMI------ITVLPVPPLAVRPA 224
Query: 237 EVPHAFSHEKKLFFDNWTRHLKKMVDYRG---RDIE---LSHLVQDCLKISKLHLDKSSR 290
V + + + D+ T L ++ RD + SH++ + +++ + H+ +
Sbjct: 225 VVMYGATRNQ----DDLTHKLADIIKANNQLRRDEQNGAASHILAEDIRMLQFHVTTMTD 280
Query: 291 KDSAEV--------RQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIG 342
D + R K+I I+ ++GKR D R V+T DPN+ L ++G
Sbjct: 281 NDVPGLPKAIQKSGRPLKSIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVG 340
Query: 343 IPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRID-------- 394
+P +A+ L E + +N + L + L G ++ R+ G RID
Sbjct: 341 VPRTIAQNLTYPENVTQFNIDHLQKLVQNGTLYPGAKFIVRENG----DRIDLRYHPKVA 396
Query: 395 --ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
L++G ++ R + + D V+ NR P++H S++ VKVLP S+ +N SP++ D
Sbjct: 397 DLTLQVGYVVERHMLNDDYVIFNRQPTLHKMSMMCHRVKVLPWSTF-RLNLSVTSPYNAD 455
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGD ++ ++PQ++ + E+++L + + +I Q+ + ++S+ QD+LTA + + + V L
Sbjct: 456 FDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPVMSIVQDTLTAVNKMTQRDVFL 515
Query: 513 SHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFE 557
+ +M L M+ P R P I+K + +W+GKQLF++++P P+ E
Sbjct: 516 NRAEMMNLLMYLPTWNGRMPKPAIYKPQR--LWTGKQLFTLIIPGRVNCIRTHSTHPEDE 573
Query: 558 YTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL-IKRYRDKVLDFLYAAQ 608
P + + K+I +G L G+L + ++ + ++V F Q
Sbjct: 574 DGGPYRWISPGDTKVIVDDGDLIAGILCKKTLGSGSGSLIHIVALEHHHEQVSMFFNNIQ 633
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFL 668
V+ WL + G T+ ++D L + R +I + +A+D F+ ++D N+
Sbjct: 634 TVVNNWLLIEGHTIGIADT-LYDQATRR-----QIGETITKAKDAV-FE--IIDQAHNYD 684
Query: 669 MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMF 728
+ + R ++E + L+ A + A + SK N+ M
Sbjct: 685 LQPTPGNTLRQ------TFENSVNKILNDARDKT--------GSCAQRSLSKYNNFNIMV 730
Query: 729 KAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKS 782
AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 731 VAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQ----------------DD 774
Query: 783 YIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTA 838
Y P + VENS+L GL P E F H++ R+ G + RRL+ M +
Sbjct: 775 YGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVK 834
Query: 839 YDGTVRNAYGNQIVQFSYNIEG 860
YDGTVRN NQ++Q Y +G
Sbjct: 835 YDGTVRNQI-NQLIQLRYGEDG 855
>gi|356546354|ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
max]
Length = 2020
Score = 213 bits (541), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 186/657 (28%), Positives = 294/657 (44%), Gaps = 72/657 (10%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
V G + GI G++T E S+ E I S+++NP LGLP C SCG + C
Sbjct: 9 VLDGTVVGIKFGMATRQEICTASISESSISHASQLSNPFLGLPLEFGRCESCGTSEVGKC 68
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVR 129
EGHFG+++ P I HP +S++ ++L+ +C C +RK K SS R+ C +
Sbjct: 69 EGHFGYVELPVPIYHPSHISELKRMLSVVCLNCLKMRK--TKFPASSSGLAQRLISPCCQ 126
Query: 130 NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKP 189
+ +R ++ + D + A+ K+SK K+ D +W F+ + E
Sbjct: 127 DVNAALVSIR-EVKTSDGACYLAL------KVSKS--KIHDGFWSFLEKYGYRYEGD--E 175
Query: 190 NRKVLSCKQVSYLLK---DVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEK 246
R +L C+ + + + + + + +D LK PV PN V EV S
Sbjct: 176 TRALLPCEAMEIIKRIPIETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGAS--- 232
Query: 247 KLFFDNWTRHLKKMV--------------DYRGRDIELSHLVQDCLKISKLHLDKSSRKD 292
+ D L+K++ ++ +E + L + ++ +D
Sbjct: 233 VMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARD 292
Query: 293 SAEVRQKKNIDISNSSGLRWIKDV-VLGKRNDDCF--RMVVTGDPNIKLKEIGIPCQVAE 349
E N +++ SS W++ + L R F R V+TGD ++ E+GIP +VA+
Sbjct: 293 -IETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQ 351
Query: 350 RLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIY 403
R+ ER+N N L +C++++ E Y R+G I L+ G I++
Sbjct: 352 RITFEERVNIHNIRYLQKLVDEHLCLTYK--EGVSTYSLREGSKGHIY----LKPGQIVH 405
Query: 404 RPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIP 463
R + DGDIV INRPP+ H HSL AL V + V INPL C P DFDGDC+H + P
Sbjct: 406 RRIMDGDIVFINRPPTTHKHSLQALYVYIHE-DHTVKINPLICGPLGADFDGDCVHLFYP 464
Query: 464 QAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF 523
Q++ A+ E+ EL A++ QL++ SG L L DSL A +L++ L QL MF
Sbjct: 465 QSLAAKAEVVELFAVENQLLSSHSGNLNLQLSTDSLLALKMLVK-RCFLGRAAANQLAMF 523
Query: 524 CPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLR 582
P + K S D+ W+ Q+ LP F+ T GG+ + +
Sbjct: 524 LLLPLPRPALLKASSDDACWTSIQILQGALPMGFDCT---------GGRYLIRQSEILEF 574
Query: 583 DYEGNLFQYLIKRYRDKV---------LDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
D+ + I + L F Q L E L G +VSL + ++
Sbjct: 575 DFSRDALPATINEIAASIFFGKGPMEALKFFDVLQPFLMESLFAEGFSVSLEEFSIS 631
Score = 157 bits (398), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 147/568 (25%), Positives = 255/568 (44%), Gaps = 43/568 (7%)
Query: 785 PSA---VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAY 839
PSA +++ F GL+P E +HS+++R+ + L PGTL + LM +RD+ Y
Sbjct: 742 PSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICY 801
Query: 840 DGTVRNAYGNQIVQFSYNIE-GTST----PTGEIGDQPVGSLSACAISEAAYSALDQPIS 894
DGTVRN N I+QF Y I+ G T P GE PVG L+A A+S AY A+
Sbjct: 802 DGTVRNICSNSIIQFEYGIQAGDKTEHLFPAGE----PVGVLAATAMSNPAYKAV----- 852
Query: 895 LLETSPLLN-----LKNVLECGSKKSN--ADQTMSLFLSNKLGKRRHGFEYGALEVKNHL 947
L+ SP N +K +L C N D+ + L+L++ E A VKN L
Sbjct: 853 -LDASPNSNSSWELMKEILLCKVNFRNEPVDRRVILYLNDCDCGGSCCRENAAYSVKNQL 911
Query: 948 ECLMLSDIVSTSMIIYSPQTGSMKHF---SPWICHFHVRKEIMKRTGLKEHSIIDSLYRQ 1004
+ L + +I Y Q ++ + + H ++ + +++ + ++ + +
Sbjct: 912 RKVSLKNAAVEFIIEYQQQRTQKENSETDAGLVGHIYLDEMMLEELKISMANVFEKCLER 971
Query: 1005 CKAARTELKISVPDMLISNKDCSSINMQKECNDAF-CVTVMIVENFKRTSIDLETIQMWV 1063
K+ + K+ + + N + S + A C+T + + ++ + +
Sbjct: 972 LKSFSRKKKV---NQYLKNIELSFSESCSSSHPAAPCLTFWLKNHDSDLDNAVKVLSENI 1028
Query: 1064 MPFLLKTVVKGFREIKKVDILWKDKQKAS---KSHDDSFGELYLRVSMSGQCHITS--LW 1118
P L +T++KG I I+W + + S GEL L + + + S W
Sbjct: 1029 CPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDIVLEEEAVKQSGDAW 1088
Query: 1119 SALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHL 1178
+++ C ++ +ID RS P I+ GI + + +++ K +L EHL
Sbjct: 1089 RIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAASVKMVAKGVLREHL 1148
Query: 1179 LIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQG 1238
+++A++++ G VG N G + ++ PF A P F +AA+ D+L
Sbjct: 1149 ILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEKCHTDSLSS 1208
Query: 1239 SVDALGWGKVPSVGTGGHFDIIY-SGEGRTLS-KPVDVYNLLSTPVS-SKQNEKLKVCKA 1295
V + WGK +VGTG FDI++ S E ++ + +DVY+ L S + E+ C
Sbjct: 1209 IVASCSWGKHVAVGTGSKFDIVWDSSEIKSNEIEGMDVYSFLHMVKSVTNGEEETDACLG 1268
Query: 1296 QGLISDKCGAKFGDFAFKGLGNLDFETI 1323
+ I D ++ D N FE +
Sbjct: 1269 ED-IDDLLEEEYMDLGMSPQHNSGFEAV 1295
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 1336 DVLRLSNALKKILHK--YSIGQRLSEKDKTTVIRALY-FHPRRNEKLGIEPPDIEVTYHP 1392
D+ + ++++I+ + YS G L+ +D+ V+ ++ HP + K+G + V H
Sbjct: 1884 DIEPIMQSIRRIMQQQGYSDGDPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHS 1943
Query: 1393 EHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
Q SRCF +V +DG +DFSY KC+ + P+ AE + K+ R
Sbjct: 1944 SFQESRCFYVVCKDGQSKDFSYRKCLANYISKKYPDLAESFLGKYFR 1990
>gi|401016|sp|P31813.1|RPOA1_THECE RecName: Full=DNA-directed RNA polymerase subunit A'
gi|48141|emb|CAA47723.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 905
Score = 212 bits (540), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 235/938 (25%), Positives = 408/938 (43%), Gaps = 161/938 (17%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIDFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK---------GAGS 115
+ C GHFG ++ ++H F I ++L S C +C I+ ++ G+
Sbjct: 67 AGE-CPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHKFEVTGN 125
Query: 116 SRKEQPR-------------VCKYC--VRNPAQW-YPRMRFKLSSKDLSGKTAIIVEIDE 159
+K + R VC +C + P ++ P + ++L KD G +
Sbjct: 126 RKKAKDRLIKEIHKKAKERMVCPHCGSPQFPIKFERPTVYWELR-KDEEGNEYKHRMMPS 184
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSK 218
++ + +K+PD I DA++ +P VL+ V + + PSI E I ++
Sbjct: 185 EVRDRLEKIPDRDLPLIGLDAEK----ARPEWMVLTVLPVPPVT--MRPSITLESGIRAE 238
Query: 219 DAPFLKCFPVTPNNHRVTEVPHAFSHEKKL--FFDNWTRHLKKMVDYRGRDIELSHLVQD 276
D K + N+R+ A + + + +D H+ ++ E S +
Sbjct: 239 DDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN-----ETSGIPPA 293
Query: 277 CLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNI 336
K + S R E R + N+ GKR + R V++ DP I
Sbjct: 294 KHKSGRPLKTLSQRLKGKEGRFRGNLS---------------GKRVNFSARTVISPDPMI 338
Query: 337 KLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELYVCRKGGLVRIRRID 394
+ E+G+P +A L + E++ +N+E+L + EK G YV G RIR ++
Sbjct: 339 SINEVGVPMAIAMELTVPEKVTEFNFEKLRKMV-LNGPEKYPGANYVIDPEGR-RIRLME 396
Query: 395 --------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCC 446
L++G + R L DGD+VL NR PS+H S++A V+V+P + +N C
Sbjct: 397 NNLETVAEKLDIGWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTF-RLNLSVC 455
Query: 447 SPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM 506
P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G L++ QD ++ +LL
Sbjct: 456 PPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLT 515
Query: 507 EDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLPPDF------- 556
+ +++Q+ MF R PD + + +WSGK +FS+LLP D
Sbjct: 516 REGAYFERTEVEQMLMFAGVDVDRLPEPDKVE-NGVELWSGKTIFSLLLPKDLTIWYRNK 574
Query: 557 ----------------EYTFPSKD----------VYISGGKLISA--EGSSWLRDYEGNL 588
E P ++ YI GKL+S + +++ R+ +G L
Sbjct: 575 LCDEPGRCEALEKLIEEKLIPDEEEVRALAYDGFTYILNGKLLSGAIDKTAYGRE-DGKL 633
Query: 589 FQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+++ Y ++ FL ++ ++ +G T ++ D L + + +D I +
Sbjct: 634 LDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPTEA------LDRIREII 687
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKH 705
REA++ +N L+ A + + G+ L + E + AAL++A +A K
Sbjct: 688 REAEE-----------RVNRLIEAYRNGELEPIPGKTLEETLESKIMAALAEARDNAGK- 735
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
+A +Y N + M K G++G +L + Q + LG Q +R E
Sbjct: 736 -------VAERYLGMSNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRE--- 785
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPG 822
+ GD A+ + V NS+ +GL P E F H++ R+ D A G
Sbjct: 786 RVLTHFKPGDLGARARGF-----VINSYKSGLTPQEYFFHAMGGRE-GLVDTAVRTAQSG 839
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 840 YMQRRLINALQDLKVEYDGTVRDPTG-IIVQFRYGEDG 876
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 236/957 (24%), Positives = 395/957 (41%), Gaps = 168/957 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 10 VQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 68
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 69 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 119
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 120 MKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIR 177
Query: 178 ---FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------ 224
D E V + + V+S ++V +LK + + E FIL D + +
Sbjct: 178 RTGLDLTAEWKHVNEDSQEKKIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIV 235
Query: 225 -CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDC 277
PV P R V + + D+ T L ++ R E S H++Q+
Sbjct: 236 TVLPVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQEN 291
Query: 278 LKISKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+K+ + H+ D QK K I I+ ++GKR D R V
Sbjct: 292 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 351
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 352 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG-- 409
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 410 --ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST- 466
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+
Sbjct: 467 FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 526
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 527 LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGN 584
Query: 554 ----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIK 594
PD E P K + K++ G L G+L ++
Sbjct: 585 VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLE 644
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 645 LGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV 698
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL- 713
+N + A + E E L Q + + D ++
Sbjct: 699 ----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKT 737
Query: 714 ---AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 738 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK 797
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 798 ----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 841
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 842 TGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 897
>gi|332796431|ref|YP_004457931.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
gi|332694166|gb|AEE93633.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
Length = 880
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 236/920 (25%), Positives = 393/920 (42%), Gaps = 143/920 (15%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAK 64
I+ G+ GI + E K+SV I G E V +PRLG+ P C +CG
Sbjct: 5 IIKGVKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGSVMDPRLGVIEPGQRCPTCGNM 64
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSR------K 118
C GHFG I+ ++H F+ I LL + C +C I+ E Q+ R K
Sbjct: 65 -MGNCPGHFGHIELVKPVIHVGFVKHIYDLLRATCRRCGRIKLEDQELERYRRIYHAINK 123
Query: 119 EQPRVCKYCVRN-----------PAQWYPRMRFKLSSKD---LSGKTAIIVEIDEKLSKK 164
P K V + P +++ KL K ++ + +
Sbjct: 124 RWPSAAKRLVEHIKKSSMKAPVCPHCGEKQLKIKLEKPYNFYEERKEGVVRLTPVDIRDR 183
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFL 223
+++PDD + +D + + +P +L+ V + + PSI E I ++D
Sbjct: 184 LERIPDDDVELLGYDPK----TSRPEWMILTVLPVPPIT--IRPSIMIENGIRAEDDLTH 237
Query: 224 KCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKL 283
K + N R+ E A + + + D W + Y +I L SK
Sbjct: 238 KLVDIVRINERLKESIDAGA-PQLIVEDLWDLLQYHVATYFDNEIP-------GLPTSKH 289
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
+ R + ++ K+ N SG KR D R V++ DPNI + E+G+
Sbjct: 290 RSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPDPNISIDEVGV 339
Query: 344 PCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID-------- 394
P +A+ L + ER+ WN ER+ ++ G YV + G RRID
Sbjct: 340 PIDIAKILTVPERVTKWNIERMREYVLNGPDKWPGANYVIKPDG----RRIDLRYVKDRK 395
Query: 395 ----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
L G I+ R L DGDIV+ NR PS+H S++A VKVLP +N L C P++
Sbjct: 396 EFASTLAPGFIVERHLIDGDIVIFNRQPSLHRISMMAHKVKVLP-GRTFRLNLLVCPPYN 454
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
DFDGD ++ ++PQ+ A E EL+ + K ++ + G ++ QD ++ A+LL +
Sbjct: 455 ADFDGDEMNLHVPQSEEAIAEAKELMTVHKNILTPRYGGPIMGSAQDYISGAYLLTVKTT 514
Query: 511 LLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGKQLFSMLLPPDFEYTFPSK---- 563
LL+ ++Q + +S DI + ++ +++GKQ+ S+ LP DF Y +
Sbjct: 515 LLTEDEVQTILGVA---NISKDIGEPAILAPKRLYTGKQVVSLFLPEDFNYHGQANIASG 571
Query: 564 -----------DVY--ISGGKLISA--EGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAA 607
D Y I GKL+ + + ++ +LI+ Y D L +
Sbjct: 572 PRLCTDEDCPHDSYIVIKNGKLLEGVFDKKALGNQQPESILHWLIREYPEDYGLWLMDNI 631
Query: 608 QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
+V ++ + G+T+S+ D+ ++ + ++ + Q Q+L+
Sbjct: 632 FKVFIRYIEIHGLTMSIDDVTISQEAMAK--------IAEKAKQADKQVQELIAKYEKGE 683
Query: 668 LMSAKDSESTRSLQGEHL-SYEKQRSAA--LSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
L SL+ L + +K R+ A ++ A +D F +V+
Sbjct: 684 LEQIPGRTLEESLESYILDTLDKLRNDAGEIAAADLDPFNNVY----------------- 726
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI 784
M + G++G++L + Q + LG Q R +E + + R D + A+ +I
Sbjct: 727 -IMARTGARGSVLNITQMAAMLGQQSVRGERISRGYYERALPHFKR---NDISAEARGFI 782
Query: 785 PSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDG 841
S SF +GLNP+E F H+ R+ D A G + RRL+ + DL YDG
Sbjct: 783 YS-----SFRSGLNPIELFFHAAAGRE-GLVDTAVRTSQSGYMQRRLINALSDLRIEYDG 836
Query: 842 TVRNAYGNQIVQFSYNIEGT 861
TVR YG +++Q Y +G
Sbjct: 837 TVRTLYG-EVIQTLYGGDGV 855
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 212 bits (539), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 172/603 (28%), Positives = 278/603 (46%), Gaps = 85/603 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ L E+G+P +A L E + +N +R+ +
Sbjct: 366 IRGNLMGKRVDFSARTVITADPNLSLDEVGVPRSIALNLTFPEMVTPYNIDRMYELVRRG 425
Query: 373 LLE-KGELYVCRKGGL---VRIRRIDA----LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
LE G YV R G +R R LE G + R + DGD V+ NR PS+H S
Sbjct: 426 ALEHPGAKYVIRDDGTRIDLRFSRTQGQEIHLEPGYRVERHIVDGDPVIFNRQPSLHKMS 485
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ ++VLP S+ +N +P++ DFDGD ++ ++PQ + R E+TE++++ +Q++
Sbjct: 486 MMGHRIRVLPWSTF-RLNLSVTTPYNADFDGDEMNLHVPQNLETRAEVTEIMSVSRQILT 544
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSV 541
R ++ + QD+LT + L + + M QL M+ P P I K +
Sbjct: 545 PAGNRPVMGIVQDTLTGSRKLTKRDTFIEMDLMMQLLMWLPGWTGHVPQPAILK--PRPM 602
Query: 542 WSGKQLFSMLLPPDFEYT------------------FPS-KDVYISGGKLISA-EGSSWL 581
W+GKQ+FSM++P + T PS V I G+L+S L
Sbjct: 603 WTGKQIFSMIIPAEVNLTRTHSTHDDEEDKGNYVHMSPSDTKVLIEKGRLLSGIICKKTL 662
Query: 582 RDYEGNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G L L K + +V +F A Q V+ WL G ++ + D + + M
Sbjct: 663 GPSAGGLIHILFKEWGHEVARNFFNACQRVVNYWLMWEGHSIGIGD------AVADDATM 716
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
++ +R A++ + +V+S + + + + R ++E + + L+ A
Sbjct: 717 MQVEDAIRRAKEDV---KKVVESAQHGRLESTPGNTLRE------TFENEVNKYLNNARE 767
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
DA K V + + N+ M AGSKG++L + Q C+G Q+ P F
Sbjct: 768 DAGKKVQDSLGDF--------NNFRLMAVAGSKGSVLNISQVIACVGQQNVEGKRIPFGF 819
Query: 758 RF---PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
RF PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 820 RFRTLPHFVK----------------DDYGPESRGFVENSYLKGLTPSEFFFHAMGGREG 863
Query: 813 SFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G E G+
Sbjct: 864 VIDTAVKTSETGYIQRRLVKCMEDVMVKYDGTVRNSLGD-VIQFVYGEDGLDGAHLEFGN 922
Query: 871 QPV 873
QP+
Sbjct: 923 QPI 925
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 85/435 (19%), Positives = 165/435 (37%), Gaps = 89/435 (20%)
Query: 873 VGSLSACAISEAA---------YSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
VG+L+A ++ E A ++ + L L L NV KS ++++
Sbjct: 1105 VGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINV-----SKSPKTPSLTV 1159
Query: 924 FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGS-------------- 969
+L + + + R A +V LE L I + + I Y P +
Sbjct: 1160 YLQSGMDQER------AKDVACRLEHTTLLKITTHTEIYYDPNPLASVVEEDQSFVNDYY 1213
Query: 970 --------MKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVP---D 1018
+KH SPW+ + ++ M+ YR+ R KI+ D
Sbjct: 1214 EMPDDPEILKHISPWLLRMELDRKQME-------------YRRLTMERVAEKITADFGND 1260
Query: 1019 MLI------SNKDCSSINMQKECN--DAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKT 1070
+ + ++K I M K+ + D + + + D ++ + +L
Sbjct: 1261 LHVIFSDDNADKLILQIRMLKKTSEGDGESGDKNPEDELRSGAADDTFLRKLIPNYLWPL 1320
Query: 1071 VVKGFREIKKVDILWKDKQ-----KASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDC 1125
++G +I KV + K+++ + +D + E L S SL AL
Sbjct: 1321 TLQGLEDIAKVYMTQKNRKHFHPVTGALVNDKNVKEWVLETDGS------SLLLALSQPN 1374
Query: 1126 HQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTL 1185
+D TR+ ++I G++A Q + + S G I HL ++ + +
Sbjct: 1375 ------VDVTRTVSNDIVEIMRVLGVEAVRQSLFKEMHAVYSLYGIYINYRHLALLCDVM 1428
Query: 1186 SATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGW 1245
+A G + + G+ + + P ++ F + AA+ D L+G + +
Sbjct: 1429 TARGHIMAVTRHGI-----NGLDTGPLMRCSFEETVEILVTAAQHSETDWLRGPSENIIL 1483
Query: 1246 GKVPSVGTGGHFDII 1260
G++ VGT G+FD++
Sbjct: 1484 GQLAPVGT-GYFDLL 1497
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 212 bits (539), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 235/954 (24%), Positives = 395/954 (41%), Gaps = 168/954 (17%)
Query: 23 GISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
G+ + E ++SV E G + + +PR G+ + T+ C +C A + C
Sbjct: 1 GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMTECP 59
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRN 130
GHFG I + H F++ K+L +C C + P++ + +++
Sbjct: 60 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIVMKS 110
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP------ 177
Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 111 KGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTG 168
Query: 178 FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CF 226
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 169 LDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIVTVL 226
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDCLKI 280
PV P R V + + D+ T L ++ R E S H++Q+ +K+
Sbjct: 227 PVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQENIKM 282
Query: 281 SKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
+ H+ D QK K I I+ ++GKR D R V+T
Sbjct: 283 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 342
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIR 391
DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 343 DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG----E 398
Query: 392 RIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+ +
Sbjct: 399 RIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST-FRM 457
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA
Sbjct: 458 NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 517
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP----- 553
+ + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 518 VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGNVNM 575
Query: 554 -------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRYR 597
PD E P K + K++ G L G+L ++
Sbjct: 576 IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 635
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 636 DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV--- 686
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL---- 713
+N + A + E E L Q + + D ++
Sbjct: 687 -------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKTGGS 728
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 729 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK--- 785
Query: 768 WNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
Y P + VENS+LTGL P E + H++ R+ G
Sbjct: 786 -------------DDYGPESRGFVENSYLTGLTPSEFYFHAMGGREGLIDTAVKTAETGY 832
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 833 IQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELAEFQNMPTVKLS 885
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 212 bits (539), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 237/958 (24%), Positives = 397/958 (41%), Gaps = 170/958 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 10 VQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 68
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC-KTIRKERQKGAGSSRKEQPRVCKY 126
C GHFG I + H F++ K+L +C C K + R P++ +
Sbjct: 69 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPR----------NPKIKEI 118
Query: 127 CVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP-- 177
+++ Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 119 VMKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSI 176
Query: 178 ----FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK----- 224
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 177 RRTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMI 234
Query: 225 --CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQD 276
PV P R V + + D+ T L ++ R E S H++Q+
Sbjct: 235 VTVLPVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQE 290
Query: 277 CLKISKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
+K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 291 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 350
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGL 387
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 351 VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG- 409
Query: 388 VRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS 437
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 410 ---ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 466
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD
Sbjct: 467 -FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQD 525
Query: 498 SLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP- 553
+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 526 TLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPG 583
Query: 554 -----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LI 593
PD E P K + K++ G L G+L +
Sbjct: 584 NVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFL 643
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
+ D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 644 ELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDD 697
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
+N + A + E E L Q + + D ++
Sbjct: 698 V----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDK 736
Query: 714 ----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHEL 763
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 737 TGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFI 796
Query: 764 SCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 797 K----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 840
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 841 ETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 897
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 238/965 (24%), Positives = 394/965 (40%), Gaps = 184/965 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
+++ Q PR R GKT D L+K+N++ PD
Sbjct: 127 MKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQ-PDPNKKPGHGGCGHYQPSI 183
Query: 173 ----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
W D+Q++ + V+S ++V +LK + + E FIL D +
Sbjct: 184 RRTGLDLTAEWKHPNEDSQEK-------KIVVSAERVWEILKHI--TDEECFILGMDPKY 234
Query: 223 LK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS-- 271
+ PV P R V F K D+ T L ++ R E S
Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGA 290
Query: 272 --HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKR 321
H++Q+ +K+ + H+ D QK K I I+ ++GKR
Sbjct: 291 AAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y
Sbjct: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKY 410
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R L D D+V+ NR P++H S++ V
Sbjct: 411 IVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 467 KVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + V ++ QM L MF P + P I K +W+GKQ+
Sbjct: 526 VMGIVQDTLTAVRKMTKRDVFITREQMMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQI 583
Query: 548 FSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGN 587
FS+++P PD E P K + K++ G L G+
Sbjct: 584 FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGS 643
Query: 588 LFQY-LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ D F Q V+ WL + G ++ + D + +EI
Sbjct: 644 LLHICFLELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQCA 697
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+++A+D +N + A + E E L Q + +
Sbjct: 698 IKKAKDDV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRI 736
Query: 707 FWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRK 796
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 797 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 840
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P
Sbjct: 841 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMP 899
Query: 873 VGSLS 877
LS
Sbjct: 900 TVKLS 904
>gi|302770635|ref|XP_002968736.1| hypothetical protein SELMODRAFT_90820 [Selaginella moellendorffii]
gi|300163241|gb|EFJ29852.1| hypothetical protein SELMODRAFT_90820 [Selaginella moellendorffii]
Length = 510
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 173/592 (29%), Positives = 277/592 (46%), Gaps = 113/592 (19%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-------VCI 369
+L K C ++TGD + ++EI IP +++ ++ + ER+ +N ++L VC+
Sbjct: 1 ILSKMTQYCAIALLTGDAYLGVEEILIPDEISRQVTLPERVTGFNADKLQAIVNDLQVCL 60
Query: 370 S--------FRLLEKGELYVCRKGGLVRIRRIDA----LELGDIIYRPLTDGDIVLINRP 417
+ FR + G ++ + G +R A LE+G +++RP+ DGD+V ++R
Sbjct: 61 ACLYCFGFDFRKYQVG--FIEQNGVTCDLRGQSAERRQLEIGAVVHRPVRDGDLVFVSRH 118
Query: 418 PSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVA 477
P+++ HS+IAL ++ P S INPL CSP GDFDGD LH Y PQA ARVE EL+
Sbjct: 119 PAVYKHSVIALIARIHPGKSF-RINPLVCSPLKGDFDGDRLHVYFPQAEDARVETKELMG 177
Query: 478 LDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
L +Q SG ++SL QD L AA++L+ + + QMQQL + R+ PD +
Sbjct: 178 LKQQFQALSSGNPVISLTQDMLVAAYILVSRHIFFTAPQMQQLALHAD-RWSLPDPAIVK 236
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRY 596
++W+G Q F +LLP + ++ V IS G+L++A + SWL +L + + +++
Sbjct: 237 PLALWTGFQAFGLLLPSELAFS-TRTGVLISDGELVTAGDDGSWLGGGTDSLLRAIHEKF 295
Query: 597 R-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+ + +L + +L E+L + G ++ L D ++ REA
Sbjct: 296 GVAEAIGYLDSCCSMLKEFLHIEGFSIGLGDFNVSDRQ--------------REA----- 336
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
+L+ + N++ + R L+ + I+N
Sbjct: 337 ISELLAYAKENYVEEQDFRDVERCLEVK--------------------------IKNQT- 369
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGD 775
+ N L M KAGSKG+ H CLG+Q
Sbjct: 370 ---RRGNRLHMMMKAGSKGSASSARIHVACLGVQ-------------------------- 400
Query: 776 NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF-SDNADLPGTLTRRLMFFMRD 834
+ S ++ SF +GL+P E + HSV +R + S GTL LM + D
Sbjct: 401 -----VVHGRSEFIDKSFWSGLDPSEFWQHSVCTRATLLKSLTMHDAGTLASTLMNHLED 455
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
+ AYDGTVR+ Q+VQ Y E S GE VG+L+A I+E AY
Sbjct: 456 VYLAYDGTVRHRQSEQVVQLVYGNE--SAQPGE----AVGALAASFITEQAY 501
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 236/971 (24%), Positives = 394/971 (40%), Gaps = 184/971 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
V++ Q PR R GKT D L+K N++ PD
Sbjct: 127 VKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQ-PDPNKKPGHGGCGHYQPSI 183
Query: 173 ----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
W D+Q++ + V+S ++V +LK + + E FIL D +
Sbjct: 184 RRTGLDLSAEWKHPNEDSQEK-------KIVVSAERVWEILKHI--TDEECFILGMDPKY 234
Query: 223 LK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS-- 271
+ PV P R V + + D+ T L ++ R E S
Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVVMFGAAKNQ----DDLTHKLSDIIKANNELRKNEASGA 290
Query: 272 --HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKR 321
H++Q+ +K+ + H+ D QK K I I+ ++GKR
Sbjct: 291 AAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y
Sbjct: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKY 410
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R L D D+V+ NR P++H S++ V
Sbjct: 411 IVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 467 KVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+
Sbjct: 526 VMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQI 583
Query: 548 FSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGN 587
FS+++P PD E P K + K++ G L G+
Sbjct: 584 FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGS 643
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ Y Q V+ WL + G ++ + D + +EI
Sbjct: 644 LLHICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMA 697
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+++A+D +N + A + E E L Q + +
Sbjct: 698 IKKAKDDV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRI 736
Query: 707 FWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRK 796
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 797 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 840
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P
Sbjct: 841 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMP 899
Query: 873 VGSLSACAISE 883
LS A +
Sbjct: 900 TVKLSNKAFEK 910
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 233/972 (23%), Positives = 397/972 (40%), Gaps = 182/972 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 16 VQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRNSRCQTC-AGNQT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H FL+ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLL---------VSPTNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD---------------- 171
+++ Q PR R GK I E +++ + + P+D
Sbjct: 126 MKSKGQ--PRKRLTFVYDLCKGKN--ICEGGDEMDIQKENDPNDPNQQQSRKAGHGGCGR 181
Query: 172 --------------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILS 217
W + D+Q+++ S LS ++V +LK + + E FIL
Sbjct: 182 YQPSIRRSGLDLTAEWKHVNEDSQEKKIS-------LSAERVWEILKHI--TDEECFILG 232
Query: 218 KDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE- 269
D F + PV P + R V + + + D+ T ++ I
Sbjct: 233 MDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQ----DDITHKTSDIIKSNNELIRN 288
Query: 270 -----LSHLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDV 316
+H++ + +K+ + H+ D QK K I I+
Sbjct: 289 EQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGN 348
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++ + +
Sbjct: 349 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQY 408
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S+
Sbjct: 409 PGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSM 464
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+I
Sbjct: 465 MGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITP 523
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V L QM L MF P + P I K +W
Sbjct: 524 QANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILK--PKPLW 581
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLR 582
+GKQ+FS+++P PD E P K + K++ G L
Sbjct: 582 TGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLG 641
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L +V Y Q V+ WL + G ++ + D +
Sbjct: 642 TSAGSLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL------ 695
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 696 EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDK 746
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 747 T--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 798
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 799 KRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 842
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E +
Sbjct: 843 IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNL 901
Query: 872 PVGSLSACAISE 883
P LS A +
Sbjct: 902 PTIKLSNKAFEK 913
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 228/972 (23%), Positives = 400/972 (41%), Gaps = 183/972 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVMDRNSRCQTC-AGNQT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKML---------VSPTNPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
+++ Q PR R GK + + K+N P++
Sbjct: 126 MKSKGQ--PRKRLTFVYDLCKGKNICEGGDEMDIQKENADDPNNQQPRKVGHGGCGRYQP 183
Query: 173 ------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
W + D+Q++ + LS ++V +LK + + E FIL D
Sbjct: 184 SIRRSGLDLTAEWKHVNEDSQEK-------KIALSAERVWEILKHI--TDEECFILGMDP 234
Query: 221 PFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE---- 269
F + PV P + R V + + + D+ T L ++ I
Sbjct: 235 KFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIIKANNELIRNEQA 290
Query: 270 --LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV 316
+H++ + +K+ + H L ++ +K ++ K + G I+
Sbjct: 291 GAAAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGN 347
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++ + +
Sbjct: 348 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQY 407
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S+
Sbjct: 408 PGAKYIIRDNG----ERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSM 463
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 464 MGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITP 522
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V L QM + MF P + P I K +W
Sbjct: 523 QANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAIMK--PKPLW 580
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLR 582
+GKQ+FS+++P PD E P K + K++ G L
Sbjct: 581 TGKQVFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLG 640
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L +V Y Q V+ WL + G ++ + D +
Sbjct: 641 TSAGSLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL------ 694
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 695 EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDK 745
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 746 T--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 797
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 798 KRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 841
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E +
Sbjct: 842 IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNL 900
Query: 872 PVGSLSACAISE 883
P LS A +
Sbjct: 901 PTIKLSNKAFEK 912
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 237/965 (24%), Positives = 399/965 (41%), Gaps = 172/965 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G + P
Sbjct: 127 MKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQ 275
PV P R V + + D+ T L ++ R E S H++Q
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQ----DDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296
Query: 276 DCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 297 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 417 ----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 473 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 531
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 DTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIP 589
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L
Sbjct: 590 GNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICF 649
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL + G ++ + D + +EI +++A+D
Sbjct: 650 LELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQQAIKKAKD 703
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+N + A + E E L Q + + D ++
Sbjct: 704 DV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARD 742
Query: 713 L----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLSN 905
Query: 879 CAISE 883
A +
Sbjct: 906 KAFEK 910
>gi|375083052|ref|ZP_09730090.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
gi|374742288|gb|EHR78688.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
Length = 905
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 246/959 (25%), Positives = 406/959 (42%), Gaps = 201/959 (20%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---GAVSEVTNP--------RLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI SE P RLG+ +P C +CGA
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYSEDGYPIDGGLMDRRLGVIDPNLRCETCGA- 65
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK--------GAGSS 116
+ K C GHFG I+ ++H F I ++L S C +C IR ++ +
Sbjct: 66 NYKECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIRLTDEEIEEYMTKFSVNEA 125
Query: 117 RK--------------EQPRVCKYCVRNPAQWYPRMRFKLSS------KDLSGKTAIIVE 156
RK + VC +C Q+ +++F+ + +D G
Sbjct: 126 RKSEIDALVTEIYKKARERMVCPHC--GAPQY--QIKFERPTIYWEIRRDEEGNEYKHRM 181
Query: 157 IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFI 215
+ ++ + +K+PD + D ++ +P VL+ V + V PSI E I
Sbjct: 182 MPSEIRDRLEKIPDKDLPLLGLDPEKS----RPEWMVLTVLPVPPVT--VRPSITLESGI 235
Query: 216 LSKDAPFLKCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVD 262
++D K + N R+ + A + +FDN T +
Sbjct: 236 RAEDDLTHKLVDIIRINARLKQNIEAGAPQLIIEDLWDLLQYHVTTYFDNETSGIPPAKH 295
Query: 263 YRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRN 322
GR L L Q R E R +KN+ GKR
Sbjct: 296 KSGR--PLKTLAQ--------------RLKGKEGRFRKNLS---------------GKRV 324
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELY 380
+ R V++ DP I + E+G+P VA L + E++ +N E+L I EK G Y
Sbjct: 325 NFSARTVISPDPMISINEVGVPLVVAMELTVPEKVTEFNIEKLRKMI-LNGPEKYPGANY 383
Query: 381 VCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
V G RIR +++ L++G + R L DGDIVL NR PS+H S++A V+V
Sbjct: 384 VIDPQGR-RIRLMESNRGTIANMLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRV 442
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +++ + G ++
Sbjct: 443 MPYKTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHILSPRYGGPII 501
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSV------WSGK 545
QD ++ +LL + + +++Q+ MF D+ ++ K D V WSGK
Sbjct: 502 GGIQDHISGGYLLTREGAYFTKYEVEQMLMFA-----GVDVKELPKPDKVENGVEYWSGK 556
Query: 546 QLFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKL 572
+FS+LLP D E PS++ VYI GKL
Sbjct: 557 TIFSLLLPDDLTIWYRNKLCDDPSQCEPIEKLIEEKLVPSEEEIREVATDGFVYIRNGKL 616
Query: 573 ISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
+S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T + D L
Sbjct: 617 LSGAIDKKAYGRE-DGKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTGIDDEDL 675
Query: 630 ASHSCS--RKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL-- 685
+ + R+I+M EA+D Q +++++ N + L G+ L
Sbjct: 676 PDEAKARIREIIM--------EAEDKV---QRLIEAYKNGELE--------PLPGKTLEE 716
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ E + A LS+A +A K +A KY +N + M K G++G +L + Q +
Sbjct: 717 TLESKIMAVLSEARDNAGK--------VAEKYLGMNNHTVIMAKTGARGKILNITQMAAM 768
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
LG Q +R + + GD AK +I NS+ +GL P E F H
Sbjct: 769 LGQQSIRGKRLYRG---YRNRVLSHFKPGDLGARAKGFI-----VNSYKSGLTPQEYFFH 820
Query: 806 SVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
++ R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 821 AMGGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFRYGEDGV 877
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 234/940 (24%), Positives = 390/940 (41%), Gaps = 168/940 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLVKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
V++ Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 127 VKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------ 224
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIV 242
Query: 225 -CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDC 277
PV P R V F K D+ T L ++ R E S H++Q+
Sbjct: 243 TVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLADIIKANNELRKNEASGAAAHVIQEN 298
Query: 278 LKISKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+K+ + H+ D QK K I I+ ++GKR D R V
Sbjct: 299 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 359 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG-- 416
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 417 --ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST- 473
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+
Sbjct: 474 FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 534 LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGN 591
Query: 554 ----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIK 594
PD E P K + K++ G L G+L ++
Sbjct: 592 VNMIRAHETHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLE 651
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
D F Q V+ WL + G ++ + D + +EI +++A+D
Sbjct: 652 LGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMAIKKAKDDV 705
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL- 713
+N + A + E E L Q + + D ++
Sbjct: 706 ----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKT 744
Query: 714 ---AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 745 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK 804
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 805 ----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 848
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 849 TGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDG 887
>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 885
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 238/931 (25%), Positives = 379/931 (40%), Gaps = 165/931 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAV-----------SEVTNPRLGLPNPTNECSSCGAKD 65
+T + GI + E K+SV +I + V + RLG P C CG
Sbjct: 9 ITRVKFGILSPDEIRKMSVTQIFSAEVYDNDGSPIDGGVMDRRLGAIEPGEACPICG-NT 67
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC---KTIRKERQK----------- 111
R +C GHFG I+ ++H F+ I L + C C K +ER +
Sbjct: 68 RDSCPGHFGHIELAKPVIHVGFVKHILMYLRATCRNCGRLKIPEEERNEYLRLLSDLHEL 127
Query: 112 GAG----------SSRKEQPRVCKYC--------VRNPAQWYPRMR---FKLSSKDLSGK 150
GA + VC +C + P +Y + KL+ ++ G+
Sbjct: 128 GAPYLIKRFHEYIRRKASAAEVCPHCGVKQYKVKLEKPHTFYEQTEKGLVKLTPSEVRGR 187
Query: 151 TAIIVEIDEKLSKKNKKLPDD---YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVD 207
+K+PDD G P DA +P VL+ V + V
Sbjct: 188 L--------------EKIPDDDVKLLGGDPRDA-------RPEWMVLTVLPVPP--RSVR 224
Query: 208 PSIR-EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNW---TRHLKKMVDY 263
PS+ E I S+D K + N+R+ E + + D W H+ D
Sbjct: 225 PSVLLETGIRSEDDLTHKLVDIIRTNNRLREHVEGGA-PSAIIEDEWELLQYHVTTYFDN 283
Query: 264 RGRDIELS-HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRN 322
I ++ H LK + R E R + N+ GKR
Sbjct: 284 EAPGIPVAKHRSGKTLK------GIAQRLKGKEGRFRNNLR---------------GKRV 322
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELY 380
D R VV+ DP++ + E+G+P VA L + ER+ WN E + + EK G Y
Sbjct: 323 DFSARTVVSPDPSLSINEVGVPEDVARILTVPERVTPWNIEEMRRLV-LNGPEKWPGANY 381
Query: 381 VCRKGG-------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
V R G + R +ALE G I+ R L DGD+VL NR PS+H S++A V+VL
Sbjct: 382 VVRPDGRKISLKFVDRKAAAEALEPGFIVERHLMDGDVVLFNRQPSLHRISVMAHIVRVL 441
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P + +N L C P++ DFDGD ++ ++PQ+ AR E L+ +++ ++ + G ++
Sbjct: 442 PYKTF-RLNLLVCPPYNADFDGDEMNLHVPQSEEARTEARLLMLVERHILTPRYGGPIIG 500
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLP 553
QD ++ A++L + LLS + L ++ P+ + +W+GKQL S+ LP
Sbjct: 501 GLQDYISGAYILTSKTTLLSKDDVVDLLAVTGYKGEIPEPAILKPRELWTGKQLVSLFLP 560
Query: 554 PDFEYTFPSK------------------DVYISGGKLISA--EGSSWLRDYEGNLFQYLI 593
DF Y SK V + G L+ + +S R+ +L +LI
Sbjct: 561 KDFNYKRNSKIGSAAALRCIDEDCPHDSMVIVKNGVLLEGVLDKASIGREEPESLVHWLI 620
Query: 594 KRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
K Y D F+ ++ G T+S S L L + +R L + I RE ++
Sbjct: 621 KEYGEDYGRMFMDRVYKMFIRMSEKHGFTMSYSHLTLPEEARNR--LREIILEKKREVEE 678
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
++ + + A+ ++ + E + LS+ +D+ V
Sbjct: 679 -------LISKYRRGELQARPGKTPEE------TLEDEIIDTLSKKLLDSVAEVI----- 720
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
Y + N ++ M + G++GN + L Q + LG Q R A +
Sbjct: 721 --TPYFTLVNPVVVMARTGARGNPVNLTQMAALLGQQTVRGK---RLTRGYLGRALPHFK 775
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMF 830
D A+ +I N F+ GLNP+E F H+ R+ G + RRL+
Sbjct: 776 PEDLGPEARGFI-----ANGFVNGLNPVEMFFHAAAGREGLIDTAVRTSQSGYMQRRLIN 830
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
++DL YDG+VR G +IVQ Y +G
Sbjct: 831 ALQDLRVEYDGSVRLTTG-EIVQLLYGEDGV 860
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 211 bits (537), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 238/971 (24%), Positives = 394/971 (40%), Gaps = 184/971 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
V++ Q PR R GKT D L+K N++ PD
Sbjct: 127 VKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQ-PDPNKKPGHGGCGHYQPSI 183
Query: 173 ----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
W D+Q++ + V+S ++V +LK + + E FIL D +
Sbjct: 184 RRTGLDLSAEWKHPNEDSQEK-------KIVVSAERVWEILKHI--TDEECFILGMDPKY 234
Query: 223 LK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS-- 271
+ PV P R V F K D+ T L ++ R E S
Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGA 290
Query: 272 --HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKR 321
H++Q+ +K+ + H+ D QK K I I+ ++GKR
Sbjct: 291 AAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y
Sbjct: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKY 410
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R L D D+V+ NR P++H S++ V
Sbjct: 411 IVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 467 KVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+
Sbjct: 526 VMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQI 583
Query: 548 FSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGN 587
FS+++P PD E P K + K++ G L G+
Sbjct: 584 FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGS 643
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ Y Q V+ WL + G ++ + D + +EI
Sbjct: 644 LLHICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMA 697
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+++A+D +N + A + E E L Q + +
Sbjct: 698 IKKAKDDV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRI 736
Query: 707 FWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRK 796
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 797 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 840
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P
Sbjct: 841 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMP 899
Query: 873 VGSLSACAISE 883
LS A +
Sbjct: 900 TVKLSNKAFEK 910
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 238/971 (24%), Positives = 394/971 (40%), Gaps = 184/971 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
V++ Q PR R GKT D L+K N++ PD
Sbjct: 127 VKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQ-PDPNKKPGHGGCGHYQPSI 183
Query: 173 ----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
W D+Q++ + V+S ++V +LK + + E FIL D +
Sbjct: 184 RRTGLDLSAEWKHPNEDSQEK-------KIVVSAERVWEILKHI--TDEECFILGMDPKY 234
Query: 223 LK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS-- 271
+ PV P R V F K D+ T L ++ R E S
Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGA 290
Query: 272 --HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKR 321
H++Q+ +K+ + H+ D QK K I I+ ++GKR
Sbjct: 291 AAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y
Sbjct: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKY 410
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R L D D+V+ NR P++H S++ V
Sbjct: 411 IVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 467 KVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+
Sbjct: 526 VMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQI 583
Query: 548 FSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGN 587
FS+++P PD E P K + K++ G L G+
Sbjct: 584 FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGS 643
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ Y Q V+ WL + G ++ + D + +EI
Sbjct: 644 LLHICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMA 697
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+++A+D +N + A + E E L Q + +
Sbjct: 698 IKKAKDDV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRI 736
Query: 707 FWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRK 796
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 797 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 840
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P
Sbjct: 841 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMP 899
Query: 873 VGSLSACAISE 883
LS A +
Sbjct: 900 TVKLSNKAFEK 910
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 235/957 (24%), Positives = 395/957 (41%), Gaps = 168/957 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PNNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 127 MKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLAKDNQQVDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------ 224
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIV 242
Query: 225 -CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDC 277
PV P R V + + D+ T L ++ R E S H++Q+
Sbjct: 243 TVLPVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEGSGAAAHVIQEN 298
Query: 278 LKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+K+ + H+ D QK K I I+ ++GKR D R V
Sbjct: 299 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 359 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG-- 416
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 417 --ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+
Sbjct: 475 -RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 534 LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGN 591
Query: 554 ----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIK 594
PD E P K + K++ G L G+L ++
Sbjct: 592 VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLE 651
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
D F Q V+ WL + G ++ + D + +EI +++A+D
Sbjct: 652 LGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMAIKKAKDDV 705
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL- 713
+N + A + E E L Q + + D ++
Sbjct: 706 ----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKT 744
Query: 714 ---AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 745 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK 804
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 805 ----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 848
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 849 TGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 238/971 (24%), Positives = 394/971 (40%), Gaps = 184/971 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
V++ Q PR R GKT D L+K N++ PD
Sbjct: 127 VKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQ-PDPNKKPGHGGCGHYQPSI 183
Query: 173 ----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
W D+Q++ + V+S ++V +LK + + E FIL D +
Sbjct: 184 RRTGLDLSAEWKHPNEDSQEK-------KIVVSAERVWEILKHI--TDEECFILGMDPKY 234
Query: 223 LK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS-- 271
+ PV P R V F K D+ T L ++ R E S
Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGA 290
Query: 272 --HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKR 321
H++Q+ +K+ + H+ D QK K I I+ ++GKR
Sbjct: 291 AAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y
Sbjct: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKY 410
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R L D D+V+ NR P++H S++ V
Sbjct: 411 IVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 467 KVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+
Sbjct: 526 VMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQI 583
Query: 548 FSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGN 587
FS+++P PD E P K + K++ G L G+
Sbjct: 584 FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGS 643
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ Y Q V+ WL + G ++ + D + +EI
Sbjct: 644 LLHICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMA 697
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+++A+D +N + A + E E L Q + +
Sbjct: 698 IKKAKDDV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRI 736
Query: 707 FWDIQN----LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRK 796
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 797 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 840
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P
Sbjct: 841 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMP 899
Query: 873 VGSLSACAISE 883
LS A +
Sbjct: 900 TVKLSNKAFEK 910
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 235/965 (24%), Positives = 398/965 (41%), Gaps = 189/965 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 19 VQFGILSPDEIRRMSVTEGGIKYPEIYEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H FL+ K+L +C P I++ K G RK
Sbjct: 78 ECPGHFGHIDLAKPVFHCGFLTKTIKILRCVCFYCSKLLVNPNNPKIKEIVGKTKGQPRK 137
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN------KKLPD- 170
V C +N + + KL ++ E +KK + P
Sbjct: 138 RLAHVYDLCKGKNICEGGDEIDTKLGPDS---------QVQEDTNKKQGHGGCGRYQPSI 188
Query: 171 --------DYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
W I D+Q++ + L+ ++V +LK V S E IL D +
Sbjct: 189 RRSGLDLTAEWKHINEDSQEK-------KIALTAERVWEILKHV--SEEECMILGMDPRY 239
Query: 223 LK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------ 269
K PV P R V + + D+ T L +V +
Sbjct: 240 AKPDWMLVTVLPVPPLAVRPAVVMFGSARNQ----DDLTHKLADIVKANNELLRNEASGA 295
Query: 270 LSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKR 321
+H++ + +K+ + H + R R K+I S I+ ++GKR
Sbjct: 296 AAHIIAENIKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKR 355
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+++ E+G+P +A+ L E + +N +++ + + G Y
Sbjct: 356 VDFSARTVITPDPNLRINEVGVPRSIAQNLTFPEIVTPFNIDKMHDLVRRGNNQYPGAKY 415
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R + DGDI++ NR P++H S++ +
Sbjct: 416 IIRDNG----ERIDLRFHPKASDLHLQCGYRVERHVRDGDIIVFNRQPTLHKMSMMGHKI 471
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N +P++ DFDGD ++ ++PQ++ R E+ +L + +Q+I QS +
Sbjct: 472 KVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLAMVPRQIITPQSNKP 530
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + + L QM + MF P + P + K +W+GKQ+
Sbjct: 531 VMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDGKMPMPAVLK--PKPLWTGKQI 588
Query: 548 FSMLLP------------PDFEYTFPSK-------DVYISGGKLISA------EGSSWLR 582
FS+++P PD E P K V I G+LIS G+S
Sbjct: 589 FSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGAS--- 645
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L + +V Y Q V+ WL + G T+ + D + + K
Sbjct: 646 --SGSLMHVVFAELGHEVAGAFYGHIQTVVNAWLLLEGHTIGIGD------TIADKQTFI 697
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQA 698
+I + +A+ + ++ +H + L + + ++ + + L+ + ++ A +Q
Sbjct: 698 DIKNTIEKAKH--DVIDVIEKAHNDELEPSPGNTLRQTFENQVNRILNDARDKTGASAQK 755
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
S+ F N+ AM +G+KG+ + + Q C+G Q+ P
Sbjct: 756 SLSEF------------------NNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPF 797
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSR 810
FR PH + Y P + VENS+L GL P E F H++ R
Sbjct: 798 GFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 841
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ M + AYDGTVRN+ G Q++Q Y +G T E
Sbjct: 842 EGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNSNG-QVIQLRYGEDGLDGGTVEF 900
Query: 869 GDQPV 873
P
Sbjct: 901 QSMPT 905
>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit
[Schistosoma mansoni]
Length = 1900
Score = 211 bits (536), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 232/946 (24%), Positives = 404/946 (42%), Gaps = 165/946 (17%)
Query: 19 GISLGISTDTEKEKLSVMEIGAV-------------SEVTNPRLGLPNPTNECSSCGAKD 65
+ GI + E ++LSV G + + +PR G + ++ C +C
Sbjct: 16 ALQFGILSPDEIKELSVTPDGGIKYAETMEGGKPKLGGLMDPRQGCVDRSSICQTCSGS- 74
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ---------KGAGSS 116
+C GHFG ++ + H FL K+L +C C I + Q K G +
Sbjct: 75 VSSCPGHFGHVELAKPVFHIGFLKKTMKVLRCVCFYCSKILVDVQSSRIQEILRKTKGDN 134
Query: 117 RK------EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSG--KTAIIVEIDEKLSKKNKKL 168
R+ E+ + C+ N Q LSSK G K K S +
Sbjct: 135 RRRMSFMYEECKTRSECISNDDQVQSENDVSLSSKVSFGVHKPLFFFVTTVKRSGCGRYQ 194
Query: 169 PDDYWGFIPFDAQ-QEENSVKPNRKV-LSCKQVSYLLKDV----------DPS-IREEFI 215
P + A+ ++ N RK+ L+ ++V + K + DP R +++
Sbjct: 195 PRFRRNGLELTAEWKKVNEESQERKINLTAERVLEVFKRMSDEDCLSLGFDPRYARPDWM 254
Query: 216 LSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG---RDIE--- 269
++ PV P R V + + + D+ T L ++ RD +
Sbjct: 255 IAT------VLPVPPLCVRPAVVMYGATRNQ----DDLTHKLADIIKANNQLRRDEQNGA 304
Query: 270 LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVL 318
+H++ + +K+ + H L K+ +K ++ K + +G I+ ++
Sbjct: 305 AAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIKQ-RLKGKAG--RIRGNLM 361
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR D R V+T DPN+ L ++G+P +A+ L E + +N + L + L G
Sbjct: 362 GKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNIDHLQKLVQNGTLYPGA 421
Query: 379 LYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
++ R+ G RID L++G I+ R + + D V+ NR P++H S++
Sbjct: 422 KFIVRENG----DRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPTLHKMSMMCH 477
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
VKVLP S+ +N SP++ DFDGD ++ ++PQ++ + E+++L + + +I Q+
Sbjct: 478 RVKVLPWSTF-RLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQAN 536
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGK 545
+ ++ + QD+LTA + + + V L+ +M L M+ P R P I+K + +W+GK
Sbjct: 537 KPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGRMPKPAIYKPQR--LWTGK 594
Query: 546 QLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYE 585
QLFS+++P P+ E P K + K+I +G L
Sbjct: 595 QLFSLVIPGRVNCIRTHSTHPEEEDIGPYKWISPGDTKVIVDDGDLISGILCKKTLGSGA 654
Query: 586 GNLFQYL-IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G+L + ++ + D+V F Q V+ WL + G T+ ++D L + R +I
Sbjct: 655 GSLIHIVALEHHHDQVNMFFNNIQTVVNNWLLIEGHTIGIADT-LYDQATRR-----QIS 708
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
+ +A+D F+ ++D N+ + + R ++E + L+ A
Sbjct: 709 GTITKAKDAV-FE--IIDQAHNYDLQPTPGNTLRQ------TFENSVNKILNDARDKT-- 757
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR--- 758
+ A + SK N+ M AGSKG+ + + Q C+G Q+ P FR
Sbjct: 758 ------GSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRT 811
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 812 LPHFIQ----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDT 855
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN NQ++Q Y +G
Sbjct: 856 AVKTAETGYIQRRLIKAMESVMIKYDGTVRNQI-NQLIQLRYGEDG 900
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 236/937 (25%), Positives = 392/937 (41%), Gaps = 161/937 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECSSCGAKDRKA 68
I GI + E + SV +I + V + +P++G + +C +C +
Sbjct: 18 IQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTC-LEGMSE 76
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFG I+ + H F+ + K+L +C C ++ + + P V
Sbjct: 77 CPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMR---------DPMVANAVR 127
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN--KKLPDDY-------------- 172
R AQ + + L+ K I E DE K N D+Y
Sbjct: 128 RIKAQHRLKAIWALA------KDKKICEPDELDEKDNGDATFEDEYLQEQKAALKGHGGC 181
Query: 173 ------W--------GFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSK 218
W G + E+ + +P + +S +V +LK + P L+
Sbjct: 182 GHEQPVWRKKGLKLMGVWKPTDKGEDEAAEPEERNVSPGEVYNILKKITPEDLHIMGLNA 241
Query: 219 DAP-----FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS 271
D L PV P R + + + D+ T L +++ + G R +E
Sbjct: 242 DYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSE---DDLTYKLSQIIKFNGVVRRMEAE 298
Query: 272 ----HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV----------- 316
+V + + + H+ D A + + + G R IK +
Sbjct: 299 GVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQ------KGGRAIKAIRARLKGKEGRM 352
Query: 317 ---VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FR 372
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N L ++
Sbjct: 353 RGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGP 412
Query: 373 LLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHP 422
G Y + G R+D +L+ G I+ R L DGD VL NR PS+H
Sbjct: 413 ATYPGARYYVKDTG----ERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHK 468
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S+++ VK++ S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ + +Q+
Sbjct: 469 MSMMSHRVKLMNYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQI 527
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ Q+ + ++ + QD+L L LQ+Q + ++ P P IFK
Sbjct: 528 VSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWNGTIPPPAIFK--PK 585
Query: 540 SVWSGKQLFSMLLPPDFEYTF-----PS------KDVYISGGKLISAEGSSWLRDYEGNL 588
+W+GKQL SM +P T+ PS ++V I G+L+ + N
Sbjct: 586 PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645
Query: 589 FQYLIKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
++I R + DF A Q V+ WL G +V + D + K M I
Sbjct: 646 LVHVIFRELGHIAARDFFSAVQRVVNYWLLHYGFSVGIGD------TIVDKATMAGITNR 699
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA++ Q+L+ ++ N M K + R + E +A L++A D
Sbjct: 700 MVEAKEAV--QKLIQEAEAN-RMKPKPGMTIRE------TLEASIAAELNKAR-DWTGKT 749
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSC 765
D NL DN++ M +G+KG+ + + Q S +G Q +SF F H S
Sbjct: 750 TQD--NL-----KADNNVKQMVVSGAKGSFINISQMSGVVGQQFVEGKRISFGFRHR-SL 801
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
++R G + VENS+L GL P E + H++ R+ G
Sbjct: 802 PHFSRDDYGPESR--------GFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGY 853
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M DL AYDGTVRN+ N++VQF Y +G
Sbjct: 854 IQRRLVKAMEDLKVAYDGTVRNSV-NEVVQFLYGEDG 889
>gi|297527624|ref|YP_003669648.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
gi|297256540|gb|ADI32749.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
Length = 886
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 242/941 (25%), Positives = 387/941 (41%), Gaps = 184/941 (19%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
++ I GI + E K+SV I GA + V + RLG P C CG
Sbjct: 9 ISAIKFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIEPREVCPVCG-NT 67
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNS---ICPKCKTIRKE-------------- 108
R++C GHFG I+ ++H F+ I L + +C + K +E
Sbjct: 68 RESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEEERKKYLELLNSLKEL 127
Query: 109 -------------RQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAII- 154
R+K A + R C +C Q+ R+ + + G+ +
Sbjct: 128 GLDYLVKRLHEYIRRKAAATQR------CPHC--GAKQYKIRLEKPHTFYEDRGEEGYVK 179
Query: 155 ---VEIDEKLSKKNKKLPDDY--WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPS 209
+E+ +L K L +D G P DA +P VL+ V + V PS
Sbjct: 180 LNPIEVRARLEKI---LDEDVRLLGGDPVDA-------RPEWMVLTVLPVPP--RSVRPS 227
Query: 210 IR-EEFILSKDAPFLKCFPVTPNNHRVTE-----VPHAFSHEKKLFFDNW---TRHLKKM 260
I E I S+D K + N+R+ E P+A + D W H+
Sbjct: 228 ILLETGIRSEDDLTHKLVDIIRINNRLREHIESGAPNA------IIEDEWELLQYHVTTY 281
Query: 261 VDYRGRDIELS-HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLG 319
D I ++ H LK + R E R + N+ G
Sbjct: 282 FDNEAPGIPVARHRSGKVLK------GLAQRLKGKEGRFRGNLR---------------G 320
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKGE 378
KR D R V++ DPN+ + E+G+P VA+ L + ER+ WN E + + ++ G
Sbjct: 321 KRVDFSARTVISPDPNLSINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGA 380
Query: 379 LYVCRKGGLVRIRRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
YV R G RRI + L G I+ R L DGDIVL NR PS+H S++A
Sbjct: 381 NYVIRPDG----RRISLKYVDRKAMAETLAPGFIVERHLRDGDIVLFNRQPSLHRISIMA 436
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
V+VLP + +N L C P++ DFDGD ++ ++PQ+ AR E L+ ++K ++ +
Sbjct: 437 HVVRVLPYKTF-RLNLLVCPPYNADFDGDEMNLHVPQSEEARAEARMLMLVEKHILTPRY 495
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQL 547
G ++ QD ++ A LL S LL+ + +L +R P+ + W+GKQL
Sbjct: 496 GGPIIGGLQDYISGAFLLTSKSTLLTREDVIELLGVAGYRGKLPEPAILKPKQYWTGKQL 555
Query: 548 FSMLLPPDFEYTFPSKD------------------VYISGGKLISA--EGSSWLRDYEGN 587
S+ LP DF Y P+K V + G L+ + +S R+ +
Sbjct: 556 ISLFLPDDFNYKRPAKIAGATALRCIDEDCPHDSLVIVKNGVLLEGVLDKASIGREEPES 615
Query: 588 LFQYLIKRYRDKV----LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
L +L+K Y + + +D++Y ++ + G T+ S L L + R + + E
Sbjct: 616 LIHWLVKEYGEDIARLFMDYVY---KMFLRFAEKYGFTMGYSHLLLPPEAKKRVLEVIE- 671
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
+ +L+ L +L+ E + LS+ +D
Sbjct: 672 -------EKKKEVYELIEKYRRGELEPRPGRTIEETLEDEIIDL-------LSKKLLD-- 715
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
D+ + Y N ++ M + G++GN + L Q + LG Q R
Sbjct: 716 -----DVADTIIPYFKLSNPVIIMARTGARGNPVNLTQMAALLGQQTIRG---RRITRGY 767
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DL 820
+ GD A+ + V + F+ GLNP+E F H+ R+ +D A
Sbjct: 768 MHRTLPHFKPGDLGPEARGF-----VAHGFVDGLNPIEVFFHAAAGRE-GLTDTAVRTSQ 821
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G + RRL+ ++DL YDGTVR G +I+QF+Y +G
Sbjct: 822 SGYMQRRLINALQDLRVEYDGTVRLPTG-EIIQFAYGEDGV 861
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila
guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 238/971 (24%), Positives = 394/971 (40%), Gaps = 184/971 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
V++ Q PR R GKT D L+K N++ PD
Sbjct: 127 VKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQ-PDPNKKPGHGGCGHYQPSI 183
Query: 173 ----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF 222
W D+Q++ + V+S ++V +LK + + E FIL D +
Sbjct: 184 RRTGLDLSAEWKHPNEDSQEK-------KIVVSAERVWEILKHI--TDEECFILGMDPKY 234
Query: 223 LK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS-- 271
+ PV P R V F K D+ T L ++ R E S
Sbjct: 235 ARPDWMIVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGA 290
Query: 272 --HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKR 321
H++Q+ +K+ + H+ D QK K I I+ ++GKR
Sbjct: 291 AAHVIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKR 350
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELY 380
D R V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y
Sbjct: 351 VDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKY 410
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R L D D+V+ NR P++H S++ V
Sbjct: 411 IVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 467 KVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+
Sbjct: 526 VMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQI 583
Query: 548 FSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGN 587
FS+++P PD E P K + K++ G L G+
Sbjct: 584 FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGS 643
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ Y Q V+ WL + G ++ + D + +EI
Sbjct: 644 LLHICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMA 697
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+++A+D +N + A + E E L Q + +
Sbjct: 698 IKKAKDDV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRI 736
Query: 707 FWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 737 LNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRK 796
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 797 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 840
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P
Sbjct: 841 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMP 899
Query: 873 VGSLSACAISE 883
LS A +
Sbjct: 900 TVKLSNKAFEK 910
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 227/921 (24%), Positives = 387/921 (42%), Gaps = 173/921 (18%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PR G+ + ++ C +C A + C GHFG I + H F++ K+L +C C
Sbjct: 32 LMDPRQGVIDRSSRCQTC-AGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCS 90
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
+ P++ + +++ Q PR R GK I E +++
Sbjct: 91 KLL---------VSPNNPKIKEIVMKSKGQ--PRKRLTFVYDLCKGKH--ICEGGDEMDM 137
Query: 164 KNKKLPDDYWGFIPFDAQQEENS------VKPN-RKV---------------------LS 195
NK PDD P QQ + +PN R+V L+
Sbjct: 138 -NKDNPDD-----PGKEQQRKQGHGGCGRYQPNLRRVGLDVSAEWKHINEDSQEKKIALT 191
Query: 196 CKQVSYLLKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKL 248
++V +LK + + E FIL D F + C PV P R V + + +
Sbjct: 192 AERVWEILKHI--TDEECFILGMDPKFARPDWMIVTCLPVPPLCVRPAVVMYGSARNQ-- 247
Query: 249 FFDNWTRHLKKMVDYRGRDIE------LSHLVQDCLKISKLH-----------LDKSSRK 291
D+ T L ++ + +H++ + +K+ + H L ++ +K
Sbjct: 248 --DDLTHKLSDILKANNELLRNEQAGAATHVLAENIKMLQFHVATLVDNDMPGLPRAMQK 305
Query: 292 DSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
++ K + G I+ ++GKR D R V+T DPN+++ ++G+P +A+ L
Sbjct: 306 SGKPLKAIK-ARLKGKEGR--IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNL 362
Query: 352 QISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGD 400
E + +N +++ + + G Y+ R G RID L+ G
Sbjct: 363 TFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNG----ERIDLRFHPKTSDLHLQCGY 418
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
+ R + DGD+V+ NR P++H S++ VKVLP S+ +N C SP++ DFDGD ++
Sbjct: 419 KVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNL 477
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL 520
++PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA + + V L QM L
Sbjct: 478 HVPQSMETRAEVENIHVTPRQIITPQANQPVMGIVQDTLTAVRKMTKRDVFLEKEQMMTL 537
Query: 521 QMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDV 565
MF P + P I K +W+GKQLFS+++P PD E P K +
Sbjct: 538 LMFLPIWDGKMPQPCILK--PKPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDDGPYKWI 595
Query: 566 YISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLS 616
K++ G L G+L + +V Y Q V+ WL
Sbjct: 596 SPGDTKVMVEHGELVKGILCKKTLGTSPGSLLHVIFLELGHEVCGQFYGNIQTVVNNWLL 655
Query: 617 VRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSES 676
+ G ++ + D + S EI +++A+ + +++ +H N + +
Sbjct: 656 LEGHSIGIGDTIADRQTYS------EIQNAIKKAK--ADVIEVIQKAH-NMELEPTPGNT 706
Query: 677 TRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNL 736
R ++E Q + L+ A A K ++ N+L AM +GSKG+
Sbjct: 707 LRQ------TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSN 752
Query: 737 LKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--V 788
+ + Q C+G Q+ P FR PH + Y P +
Sbjct: 753 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGF 796
Query: 789 VENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNA 846
VENS+L GL P E + H++ R+ G + RRL+ M + YDGTVRN+
Sbjct: 797 VENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNS 856
Query: 847 YGNQIVQFSYNIEGTSTPTGE 867
G Q++Q Y +G T E
Sbjct: 857 VG-QLIQLRYGEDGLCGETVE 876
>gi|356555019|ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
max]
Length = 2098
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 189/691 (27%), Positives = 302/691 (43%), Gaps = 78/691 (11%)
Query: 12 VPSGILTGISLGISTDTE--KEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
V G + GI G++T E +S I S+++NP LGLP C SCG + C
Sbjct: 9 VLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEVGKC 68
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVR 129
EGHFG+I+ P I HP +SD+ ++L+ +C C +RK + A SS Q + C
Sbjct: 69 EGHFGYIELPIPIYHPSHISDLKRMLSMVCLNCLKLRKTKLP-ASSSGLAQRLISPCCQE 127
Query: 130 NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKP 189
+ A K S G + +++ + K+ + +W F+ +
Sbjct: 128 DKAALVSIREVKTSD----GACYLALKVSKS------KMQNGFWSFL--EKYGYRYGGDH 175
Query: 190 NRKVLSCKQVSYLLK---DVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEK 246
R +L C+ + + + + + + +D LK PV PN V EV S
Sbjct: 176 TRALLPCEAMEIIKRIPIETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVS--- 232
Query: 247 KLFFDNWTRHLKKMV--------------DYRGRDIELSHLVQDCLKISKLHLDKSSRKD 292
+ D L+K++ ++ +E + L + ++ +D
Sbjct: 233 VMSSDPSITILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARD 292
Query: 293 SAEVRQKKNIDISNSSGLRWIKDV-VLGKRNDDCF--RMVVTGDPNIKLKEIGIPCQVAE 349
E N +++ SS W++ + L R F R V+TGD ++ E+GIP +VA+
Sbjct: 293 -IETHFGVNKELTASSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGIPVEVAQ 351
Query: 350 RLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIY 403
R+ ER+N N L +C++++ E G Y R+G I L+ G I++
Sbjct: 352 RITFEERVNIHNIRYLQKLVDEHLCLTYK--EGGSTYSLREGSKGHIY----LKPGQIVH 405
Query: 404 RPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIP 463
R + DGDIV INRPP+ H HSL AL V + V INPL C P DFDGDC+H + P
Sbjct: 406 RRIMDGDIVFINRPPTTHKHSLQALYVYIHE-DHTVKINPLICGPLGADFDGDCVHLFYP 464
Query: 464 QAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF 523
Q++ A+ E+ EL +++ QL++ SG L L DSL + +L++ QL MF
Sbjct: 465 QSLAAKAEVVELFSVENQLLSSHSGNLNLQLSTDSLLSLKMLVK-RCFFDRAAANQLAMF 523
Query: 524 CPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLR 582
P + K S D+ W+ Q+ LP F+ T GG+ + +
Sbjct: 524 ILLPLPRPALLKASSGDACWTSIQILQCALPLGFDCT---------GGRYLIRQSEILEF 574
Query: 583 DYEGNLFQYLIKRYRDKV---------LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
++ ++ + V L+F Q L E L G +VSL + + S +
Sbjct: 575 EFSRDVLPATVNEIAASVFFGKGPKEALNFFDVLQPFLMESLFAEGFSVSLEEFSI-SRA 633
Query: 634 CSRKIL-----MDEIFYGLREAQDTCNFQQL 659
R I + + Y LR + QQL
Sbjct: 634 IKRIIRKSIGKVSSLLYQLRSLYNELVAQQL 664
Score = 152 bits (384), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 145/581 (24%), Positives = 251/581 (43%), Gaps = 53/581 (9%)
Query: 785 PSA---VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAY 839
PSA +++ F GL+P E +HS+++R+ + L PGTL + LM +RD+ Y
Sbjct: 742 PSAEYGLLKGCFFNGLDPYEEMVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVICY 801
Query: 840 DGTVRNAYGNQIVQFSYNIEGTST-----PTGEIGDQPVGSLSACAISEAAYSALDQPIS 894
DGTVRN N I+QF Y I+ P GE PVG L+A A+S AY A+
Sbjct: 802 DGTVRNICSNSIIQFEYGIQAGDKSEHLFPAGE----PVGVLAATAMSNPAYKAV----- 852
Query: 895 LLETSPLLN-----LKNVLECGSKKSN--ADQTMSLFLSNKLGKRRHGFEYGALEVKNHL 947
L+ SP N +K +L C N D+ + L+L++ + E A VK+ L
Sbjct: 853 -LDASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQL 911
Query: 948 ECLMLSDIVSTSMIIYSPQTGSMKHFSP---WICHFHVRKEIMKRTGLKEHSIIDSLYRQ 1004
+ L D +I Y Q ++ + H ++ + +++ + + D + +
Sbjct: 912 RKVSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMMLEELKISMAYVFDKCHER 971
Query: 1005 CKAARTELKI--SVPDMLISNK------------DCSSINMQKECNDAFCVTVMIVENFK 1050
K+ + K+ S+ ++ +S SS + A C+T +
Sbjct: 972 LKSFSQKKKVNQSLKNIELSFSLFVGLYHFLIMFHLSSESCSSSHPAAPCLTFWLKNYDS 1031
Query: 1051 RTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKAS---KSHDDSFGELYLRVS 1107
++ + + P L KT+++G I I+W + + S GEL L +
Sbjct: 1032 DLDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELALDII 1091
Query: 1108 MSGQCHITS--LWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESA 1165
+ + S W +++ C ++ +ID RS P I+ GI + + ++
Sbjct: 1092 LEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRVAAS 1151
Query: 1166 ISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFI 1225
+ K +L EHL+++A++++ G VG N G + ++ PF A P F
Sbjct: 1152 VKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPKKCFE 1211
Query: 1226 KAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGE--GRTLSKPVDVYNLLSTPVS 1283
+AA+ D+L V + WGK +VGTG FD+++ + +DVY+ L S
Sbjct: 1212 RAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLHMVKS 1271
Query: 1284 -SKQNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETI 1323
+ E+ C + I D ++ D N FE +
Sbjct: 1272 FTNGEEETDACLGED-IDDLLEEEYMDLGMSPQHNSGFEAV 1311
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 1336 DVLRLSNALKKILHK--YSIGQRLSEKDKTTVIRALY-FHPRRNEKLGIEPPDIEVTYHP 1392
D+ + ++++I+ + Y+ G L+ +D+ V+ ++ HP + K+G + V H
Sbjct: 1943 DIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDYVMVNKHS 2002
Query: 1393 EHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
Q SRCF +V +DG +DFSY KC+ + P+ AE + K+ R
Sbjct: 2003 SFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFR 2049
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 236/957 (24%), Positives = 395/957 (41%), Gaps = 168/957 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D ++K N+++ P+ G + P
Sbjct: 127 MKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDMTKDNQQVDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------ 224
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIV 242
Query: 225 -CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDC 277
PV P R V F K D+ T L ++ R E S H++Q+
Sbjct: 243 TVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLADIIKANNELRKNEASGAAAHVIQEN 298
Query: 278 LKISKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+K+ + H+ D QK K I I+ ++GKR D R V
Sbjct: 299 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 359 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG-- 416
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 417 --ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST- 473
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+
Sbjct: 474 FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 534 LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGN 591
Query: 554 ----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIK 594
PD E P K + K++ G L G+L ++
Sbjct: 592 VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLE 651
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
D F Q V+ WL + G ++ + D + +EI +++A+D
Sbjct: 652 LGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMAIKKAKDDV 705
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL- 713
+N + A + E E L Q + + D ++
Sbjct: 706 ----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKT 744
Query: 714 ---AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 745 GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK 804
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 805 ----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 848
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 849 TGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 232/975 (23%), Positives = 398/975 (40%), Gaps = 189/975 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 16 VQFGILAPDEIRRMSVTEGGIKFAETYEGGRPKLQGLMDPRQGVMDRNSRCQTC-AGNQT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H FL+ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFLTKSIKILRCVCFYCSKML---------VSPTNPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD---------------- 171
+++ Q PR R GK + + K N PDD
Sbjct: 126 MKSKGQ--PRKRLTFVYDLCKGKNICEGGDEMDIQKDN---PDDPANQQPRKQGHGGCGR 180
Query: 172 --------------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILS 217
W + D+Q+++ S LS ++V + K + + E +IL
Sbjct: 181 YQPNIRRTGLDLTAEWKHVNEDSQEKKIS-------LSAERVWEIFKHI--TDEECYILG 231
Query: 218 KDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE- 269
D F + PV P + R V + + + D+ T L ++ I
Sbjct: 232 MDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIIKSNNELIRN 287
Query: 270 -----LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWI 313
+H++ + +K+ + H L ++ +K ++ K + G I
Sbjct: 288 EQAGAAAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--I 344
Query: 314 KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL 373
+ ++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++ +
Sbjct: 345 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGN 404
Query: 374 LE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 405 SQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQPTLHK 460
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+
Sbjct: 461 MSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQI 519
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKD 539
I Q+ + ++ + QD+LTA + + V L QM L MF P + P I K
Sbjct: 520 ITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMK--PK 577
Query: 540 SVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------S 579
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 578 PLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKK 637
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L +V Y Q V+ WL + G ++ + D +
Sbjct: 638 TLGTSAGSLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL--- 694
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 695 ---EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDA 742
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 743 RDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPF 794
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSR 810
FR PH + Y P + VENS+L GL P E F H++ R
Sbjct: 795 GFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 838
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E
Sbjct: 839 EGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEF 897
Query: 869 GDQPVGSLSACAISE 883
+ P LS A +
Sbjct: 898 QNLPTIKLSNRAFEK 912
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 236/954 (24%), Positives = 392/954 (41%), Gaps = 168/954 (17%)
Query: 23 GISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
GI + E ++SV E G + + +PR G+ + T+ C +C A + C
Sbjct: 1 GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMTECP 59
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRN 130
GHFG I + H F++ K+L +C C + P++ + V++
Sbjct: 60 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIVVKS 110
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP------ 177
Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 111 KGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTG 168
Query: 178 FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CF 226
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 169 LDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIVTVL 226
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDCLKI 280
PV P R V + + D+ T L ++ R E S H++Q+ +K+
Sbjct: 227 PVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQENIKM 282
Query: 281 SKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
+ H+ D QK K I I+ ++GKR D R V+T
Sbjct: 283 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 342
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIR 391
DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 343 DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG----E 398
Query: 392 RIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+ +
Sbjct: 399 RIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST-FRM 457
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N C SP++ DFDGD ++ ++PQ++ R E + +Q+I Q+ + ++ + QD+LTA
Sbjct: 458 NLSCTSPYNADFDGDEMNLHVPQSMETRAEAENIHITPRQIITPQANKPVMGIVQDTLTA 517
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP----- 553
+ + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 518 VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGNVNM 575
Query: 554 -------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRYR 597
PD E P K + K++ G L G+L ++
Sbjct: 576 IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 635
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
D F Q V+ WL G ++ + D + + EI +++A+D
Sbjct: 636 DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV--- 686
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL---- 713
+N + A + E E L Q + + D ++
Sbjct: 687 -------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKTGGS 728
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 729 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK--- 785
Query: 768 WNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 786 -------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGY 832
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 833 IQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 885
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 221/930 (23%), Positives = 387/930 (41%), Gaps = 173/930 (18%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PR G+ + + C +C A ++ C GHFG I + H FL+ K+L +C C
Sbjct: 32 LMDPRQGVIDRNSRCQTC-AGNQTECAGHFGHINLAKPVFHVGFLTKTIKILRCVCFYCS 90
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
+ P++ + +++ Q PR R GK I E +++
Sbjct: 91 KLL---------VSPTNPKIKEVVMKSKGQ--PRKRLTFVYDLCKGKN--ICEGGDEMDI 137
Query: 164 KNKKLPDDY---------------------------WGFIPFDAQQEENSVKPNRKVLSC 196
+ + P+ W + D+Q+++ S LS
Sbjct: 138 QKEDDPNSQQPRKAGHGGCGRYQPSIRRAGLDLTAEWKHVNEDSQEKKIS-------LSA 190
Query: 197 KQVSYLLKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLF 249
++V +L+ + + E FIL D F + PV P R V + + +
Sbjct: 191 ERVWEILRHI--TDEECFILGMDPKFARPDWMIVTVLPVPPLCVRPAVVMYGSARNQ--- 245
Query: 250 FDNWTRHLKKMVDYRGRDIE------LSHLVQDCLKISKLH-----------LDKSSRKD 292
D+ T L ++ + +H+V D +K+ + H L ++ +K
Sbjct: 246 -DDLTHKLADIIKSNNELVRNEQAGAAAHVVADNIKMLQFHVATLVDNDMPGLPRAMQKS 304
Query: 293 SAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQ 352
++ K + G I+ ++GKR D R V+T DPN+++ ++G+P +A+ +
Sbjct: 305 GKPLKAIK-ARLKGKEGR--IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMT 361
Query: 353 ISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDI 401
E + +N +++ + + G Y+ R G RID L+ G
Sbjct: 362 FPEIVTPFNIDKMQDLVRRGNSQYPGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYK 417
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
+ R + DGD+V+ NR P++H S++ VKVLP S+ +N C SP++ DFDGD ++ +
Sbjct: 418 VERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLH 476
Query: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ 521
+PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA + + V L QM L
Sbjct: 477 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLL 536
Query: 522 MFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVY 566
MF P + P I K +W+GKQ+FS+++P PD E P + +
Sbjct: 537 MFLPIWDGKMPQPAILK--PKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYRWIS 594
Query: 567 ISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSV 617
K++ G L G+L +V Y Q V+ WL +
Sbjct: 595 PGDTKVMVEHGELVMGILCKKTLGASAGSLLHICFLELGHEVCGLFYGNIQTVINNWLLL 654
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
G ++ + D + EI +++A++ + +++ +H N + +
Sbjct: 655 EGHSIGIGDTIADPQTYM------EIQRAIKKAKE--DVIEVIHKAH-NMELEPTPGNTL 705
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLL 737
R ++E Q + L+ A A K ++ N+L AM AGSKG+ +
Sbjct: 706 RQ------TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNI 751
Query: 738 KLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VV 789
+ Q C+G Q+ P FR PH + Y P + V
Sbjct: 752 NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGFV 795
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAY 847
ENS+L GL P E + H++ R+ G + RRL+ M + YDGTVRN+
Sbjct: 796 ENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 855
Query: 848 GNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G Q++Q Y +G + E + P LS
Sbjct: 856 G-QLIQLRYGEDGLCGESVEFQNLPTVKLS 884
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 238/959 (24%), Positives = 396/959 (41%), Gaps = 172/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G + P
Sbjct: 127 MKSRGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQ 275
PV P R V F K D+ T L ++ R E S H++Q
Sbjct: 241 IVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296
Query: 276 DCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 297 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 417 ----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 473 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 531
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 DTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK--PRPLWTGKQIFSLIIP 589
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L
Sbjct: 590 GNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICF 649
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL G ++ + D + +EI +++A+D
Sbjct: 650 LELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQT------YNEIQQAIKKAKD 703
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+N + A + E E L Q + + D ++
Sbjct: 704 DV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARD 742
Query: 713 L----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 210 bits (534), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 236/959 (24%), Positives = 395/959 (41%), Gaps = 172/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G + P
Sbjct: 127 MKSRGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQ 275
PV P R V + + D+ T L ++ R E S H++Q
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQ----DDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296
Query: 276 DCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 297 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 417 ----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 473 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 531
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 DTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK--PRPLWTGKQIFSLIIP 589
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L
Sbjct: 590 GNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICF 649
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL G ++ + D + +EI +++A+D
Sbjct: 650 LELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQT------YNEIQQAIKKAKD 703
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+N + A + E E L Q + + D +
Sbjct: 704 DV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDAHD 742
Query: 713 L----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 210 bits (534), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 238/959 (24%), Positives = 396/959 (41%), Gaps = 172/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G + P
Sbjct: 127 MKSRGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQ 275
PV P R V F K D+ T L ++ R E S H++Q
Sbjct: 241 IVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296
Query: 276 DCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 297 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 417 ----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 473 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 531
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 DTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK--PRPLWTGKQIFSLIIP 589
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L
Sbjct: 590 GNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICF 649
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL G ++ + D + +EI +++A+D
Sbjct: 650 LELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQT------YNEIQQAIKKAKD 703
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+N + A + E E L Q + + D ++
Sbjct: 704 DV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARD 742
Query: 713 L----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 209 bits (533), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 238/965 (24%), Positives = 398/965 (41%), Gaps = 172/965 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D ++K N++ P+ G + P
Sbjct: 127 MKSKGQ--PRKRLAYVYDLCKGKTICEGGEDMDITKGNQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQ 275
PV P R V F K D+ T L ++ R E S H++Q
Sbjct: 241 IVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296
Query: 276 DCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 297 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 417 ----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 473 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 531
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 DTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIP 589
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L
Sbjct: 590 GNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICF 649
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL + G ++ + D + +EI +++A+D
Sbjct: 650 LELGHDIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQQAIKKAKD 703
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+N + A + E E L Q + + D ++
Sbjct: 704 DV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARD 742
Query: 713 L----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLSN 905
Query: 879 CAISE 883
A +
Sbjct: 906 KAFEK 910
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 209 bits (533), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 235/954 (24%), Positives = 394/954 (41%), Gaps = 168/954 (17%)
Query: 23 GISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
GI + E ++SV E G + + +PR G+ + T+ C +C A + C
Sbjct: 1 GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMTECP 59
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRN 130
GHFG I + H F++ K+L +C C + P++ + +++
Sbjct: 60 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIVMKS 110
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP------ 177
Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 111 KGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTG 168
Query: 178 FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CF 226
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 169 LDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIVTVL 226
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDCLKI 280
PV P R V + + D+ T L ++ R E S H++Q+ +K+
Sbjct: 227 PVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQENIKM 282
Query: 281 SKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
+ H+ D QK K I I+ ++GKR D R V+T
Sbjct: 283 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 342
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIR 391
DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 343 DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG----E 398
Query: 392 RIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+ +
Sbjct: 399 RIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST-FRM 457
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA
Sbjct: 458 NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 517
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP----- 553
+ + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 518 VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGNVNM 575
Query: 554 -------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRYR 597
PD E P K + K++ G L G+L ++
Sbjct: 576 IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 635
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 636 DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV--- 686
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL---- 713
+N + A + E E L Q + + D ++
Sbjct: 687 -------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKTGGS 728
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 729 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK--- 785
Query: 768 WNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 786 -------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGY 832
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 833 IQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 885
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 209 bits (533), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 238/959 (24%), Positives = 396/959 (41%), Gaps = 172/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G + P
Sbjct: 127 MKSRGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQ 275
PV P R V F K D+ T L ++ R E S H++Q
Sbjct: 241 IVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296
Query: 276 DCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 297 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 417 ----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 473 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 531
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 DTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK--PRPLWTGKQIFSLIIP 589
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L
Sbjct: 590 GNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICF 649
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL G ++ + D + +EI +++A+D
Sbjct: 650 LELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQT------YNEIQQAIKKAKD 703
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+N + A + E E L Q + + D ++
Sbjct: 704 DV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARD 742
Query: 713 L----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 209 bits (533), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 235/954 (24%), Positives = 393/954 (41%), Gaps = 168/954 (17%)
Query: 23 GISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
GI + E ++SV E G + + +PR G+ + T+ C +C A + C
Sbjct: 1 GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMTECP 59
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRN 130
GHFG I + H F++ K+L +C C + P++ + +++
Sbjct: 60 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIVMKS 110
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP------ 177
Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 111 KGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTG 168
Query: 178 FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CF 226
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 169 LDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIVTVL 226
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDCLKI 280
PV P R V + + D+ T L ++ R E S H++Q+ +K+
Sbjct: 227 PVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQENIKM 282
Query: 281 SKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
+ H+ D QK K I I+ ++GKR D R V+T
Sbjct: 283 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 342
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKGELYVCRKGGLVRIR 391
DPN+++ ++G+P +A+ L E + +N +R+ + G Y+ R G
Sbjct: 343 DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELARRGNSQYPGAKYIVRDNG----E 398
Query: 392 RIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+ +
Sbjct: 399 RIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST-FRM 457
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA
Sbjct: 458 NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 517
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP----- 553
+ + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 518 VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGNVNM 575
Query: 554 -------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRYR 597
PD E P K + K++ G L G+L ++
Sbjct: 576 IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 635
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 636 DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV--- 686
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL---- 713
+N + A + E E L Q + + D ++
Sbjct: 687 -------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKTGGS 728
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 729 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK--- 785
Query: 768 WNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 786 -------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGY 832
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 833 IQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 885
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 209 bits (532), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 234/954 (24%), Positives = 394/954 (41%), Gaps = 168/954 (17%)
Query: 23 GISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
G+ + E ++SV E G + + +PR G+ + T+ C +C A + C
Sbjct: 1 GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMTECP 59
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRN 130
GHFG I + H F++ K+L +C C + P++ + +++
Sbjct: 60 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIVMKS 110
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP------ 177
Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 111 KGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTG 168
Query: 178 FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CF 226
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 169 LDLTAEWKHVNEDSQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIVTVL 226
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDCLKI 280
PV P R V + + D+ T L ++ R E S H++Q+ +K+
Sbjct: 227 PVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQENIKM 282
Query: 281 SKLHLDKSSRKD---SAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
+ H+ D QK K I I+ ++GKR D R V+T
Sbjct: 283 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 342
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIR 391
DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 343 DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG----E 398
Query: 392 RIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+ +
Sbjct: 399 RIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST-FRM 457
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA
Sbjct: 458 NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 517
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP----- 553
+ + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 518 VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGNVNM 575
Query: 554 -------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRYR 597
PD E P K + K++ G L G+L ++
Sbjct: 576 IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 635
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 636 DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV--- 686
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL---- 713
+N + A + E E L Q + + D ++
Sbjct: 687 -------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKTGGS 728
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 729 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK--- 785
Query: 768 WNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 786 -------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGY 832
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 833 IQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 885
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 234/935 (25%), Positives = 392/935 (41%), Gaps = 157/935 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECSSCGAKDRKA 68
I GI + E + SV +I + V + +P++G + +C +C +
Sbjct: 18 IQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTC-LEGMSE 76
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFG I+ + H F+ + K+L +C C ++ + + P V
Sbjct: 77 CPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMR---------DPMVANAVR 127
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY---------------- 172
R AQ + + L+ K E+DEK + D+Y
Sbjct: 128 RIKAQHRLKAIWALAKDK---KHCEPDELDEK-DNGDATFEDEYLQEQKAAMKGHGGCGH 183
Query: 173 ----W--------GFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
W G + E+ + +P + +S +V +LK + P L+ D
Sbjct: 184 EQPVWRKKGLKLMGVWKPTDKGEDEAAEPEERNISPGEVYNILKKITPEDLHIMGLNADY 243
Query: 221 P-----FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS-- 271
L PV P R + + + D+ T L +++ + G R +E
Sbjct: 244 ARPDWMILTVLPVPPAAVRPSIAVDGGAMRSE---DDLTYKLSQIIKFNGVVRRMEAEGV 300
Query: 272 --HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV------------- 316
+V + + + H+ D A + + + G R IK +
Sbjct: 301 PPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQ------KGGRAIKAIRARLKGKEGRMRG 354
Query: 317 -VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLL 374
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N L ++
Sbjct: 355 NLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPAT 414
Query: 375 EKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G Y + G R+D +L+ G I+ R L DGD VL NR PS+H S
Sbjct: 415 YPGARYYVKDTG----ERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMS 470
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
+++ VK++ S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ + +Q+++
Sbjct: 471 MMSHRVKLMNYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVS 529
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSV 541
Q+ + ++ + QD+L L LQ+Q + ++ P P IFK +
Sbjct: 530 PQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFK--PKPM 587
Query: 542 WSGKQLFSMLLPPDFEYTF-----PS------KDVYISGGKLISAEGSSWLRDYEGNLFQ 590
W+GKQL SM +P T+ PS ++V I G+L+ + N
Sbjct: 588 WTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNGLV 647
Query: 591 YLIKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
++I R + DF A Q V+ WL G +V + D + K M I +
Sbjct: 648 HVIFRELGHIAARDFFSAVQRVVNYWLLHFGFSVGIGD------TIVDKATMAGITNRMV 701
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA++ Q+L+ ++ N M K + R + E +A L++A D
Sbjct: 702 EAKEAV--QKLIQEAEAN-RMKPKPGMTIRE------TLEASIAAELNKAR-DWTGKTTQ 751
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAA 767
D NL DN++ M +G+KG+ + + Q S +G Q +SF F H S
Sbjct: 752 D--NL-----KADNNVKQMVVSGAKGSFINISQMSGVVGQQFVEGKRISFGFRHR-SLPH 803
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
++R G + VENS+L GL P E + H++ R+ G +
Sbjct: 804 FSRDDYGPESR--------GFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQ 855
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ M DL AYDGTVRN+ N++VQF Y +G
Sbjct: 856 RRLVKAMEDLKVAYDGTVRNSV-NEVVQFLYGEDG 889
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 229/964 (23%), Positives = 394/964 (40%), Gaps = 184/964 (19%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNEC 58
+ P + + GI E ++SV E G + + +PR G+ + + C
Sbjct: 7 KAPLRTVKKVQFGILAPDEIRRMSVTEGGVRFSETMEGGRPKLGGLMDPRQGVIDRNSRC 66
Query: 59 SSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRK 118
+C A + C GHFG I + H F++ K+L +C C + Q
Sbjct: 67 QTC-AGNMTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFNCSKLLVSPQ-------- 117
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD------- 171
P++ + V++ Q PR R GK I E E + +P D
Sbjct: 118 -NPKIKEVVVKSKGQ--PRKRLAYVYDLCKGKK--ICEGGEDMDMTKDGIPTDPSKKTGH 172
Query: 172 -------------------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIRE 212
W + D Q++ + V+S ++V +LK + + E
Sbjct: 173 GGCGHYQPQIKRTGLDITAEWKHVNEDTQEK-------KIVVSAERVWEILKHI--TDEE 223
Query: 213 EFILSKDAPF-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG 265
F+L D F + PV P R V + + D+ T L ++
Sbjct: 224 CFVLGMDPKFARPDWMIITVMPVPPLAVRPAVVMFGAAKNQ----DDLTHKLSDIIKANN 279
Query: 266 R------DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSS 308
+H++ + +K+ + H + ++ +K ++ K+ +
Sbjct: 280 ELKRNEAAGAAAHVITENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKS-RLKGKE 338
Query: 309 GLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVC 368
G I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N ER+
Sbjct: 339 GR--IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNLERMQEL 396
Query: 369 ISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRP 417
+ + G Y+ R G RID L+ G + R L D D+V+ NR
Sbjct: 397 VRRGNSQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQ 452
Query: 418 PSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVA 477
P++H S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ +
Sbjct: 453 PTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHI 511
Query: 478 LDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIF 534
+Q+I Q+ + ++ + QD+LTA + + V + QM + MF P + P I
Sbjct: 512 TPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPTWNGKMPQPCIL 571
Query: 535 KISKDSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA 575
K +W+GKQ+FS+++P PD E P K V + G+LI
Sbjct: 572 K--PKPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIKG 629
Query: 576 -EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHS 633
+ L G+L +V Y Q V+ WL + G ++ + D +
Sbjct: 630 ILCKNTLGTSAGSLLHICFLELGHEVAGRFYGNIQTVVNHWLLLEGHSIGIGDTIADPQT 689
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
EI +++A++ + +++ +H N + + R ++E Q +
Sbjct: 690 YM------EIQNSIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNR 734
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
L+ A A K ++ N+L AM +GSKG+ + + Q C+G Q+
Sbjct: 735 ILNDARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 786
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIH 805
P FR PH + Y P + VENS+L GL P E + H
Sbjct: 787 KRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFH 830
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 831 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCG 889
Query: 864 PTGE 867
T E
Sbjct: 890 ETVE 893
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 228/966 (23%), Positives = 396/966 (40%), Gaps = 183/966 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 16 VQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNQT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKML---------VSPTNPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
+++ Q PR R GK + + K N P+
Sbjct: 126 MKSKGQ--PRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGRYQP 183
Query: 173 ------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
W I D+Q+++ S LS ++V +LK + + E FIL D
Sbjct: 184 SIRRIGLDLTAEWKHINEDSQEKKIS-------LSAERVWEILKHI--TDEECFILGMDH 234
Query: 221 PF-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE---- 269
F + PV P R V + + + D+ T L ++ +
Sbjct: 235 KFARPDWMIITVLPVPPLCVRPAVVMYGSARNQ----DDLTHKLADIIKSNNELVRNEQA 290
Query: 270 --LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV 316
+H++ + +K+ + H L ++ +K ++ K + G I+
Sbjct: 291 GAAAHVISENIKMLQFHVATLIDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGN 347
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++ + +
Sbjct: 348 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQY 407
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S+
Sbjct: 408 PGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSM 463
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 464 MGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITP 522
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V L QM + MF P + P I K +W
Sbjct: 523 QANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPSIMK--PKPLW 580
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLR 582
+GKQ+FS+++P PD E P K + K++ G L
Sbjct: 581 TGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLG 640
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 641 TSAGSLLHICMLELGHEVCGQFYGNIQTVINTWLLLEGHSIGIGDTIADPQTYL------ 694
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 695 EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDK 745
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 746 T--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 797
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 798 KRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGL 841
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E +
Sbjct: 842 IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNL 900
Query: 872 PVGSLS 877
P LS
Sbjct: 901 PTIKLS 906
>gi|409095098|ref|ZP_11215122.1| DNA-directed RNA polymerase subunit A' [Thermococcus zilligii AN1]
Length = 907
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 236/942 (25%), Positives = 403/942 (42%), Gaps = 167/942 (17%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGAK
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGAK 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRK------ 118
+ C GHFG I+ ++H F I ++L S C +C I+ ++ G +K
Sbjct: 67 AGE-CPGHFGHIELARPVVHVGFAKTILRVLESTCRECGRIKLTDEEIEGYMKKFEVIGD 125
Query: 119 ----------------EQPRVCKYCVRNPAQWYPRMRFKLSS------KDLSGKTAIIVE 156
++ VC +C A +P ++F+ + KD G
Sbjct: 126 RKKARDDLIREIHKKAKERMVCPHC---GAPQFP-LKFERPTVYWELRKDEEGNDYRHRM 181
Query: 157 IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFI 215
+ ++ + +++PD G +P ENS +P VL+ V + + PSI E I
Sbjct: 182 MPNEIRDRLERIPD---GDLPLLGLHPENS-RPEWMVLTVLPVPPVT--MRPSITLESGI 235
Query: 216 LSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKL--FFDNWTRHLKKMVDYRGRDIELSHL 273
++D K + N+R+ A + + + +D H+ ++ E S +
Sbjct: 236 RAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN-----ETSGV 290
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
K + + R E R + N+ GKR + R V++ D
Sbjct: 291 PPAKHKSGRPLKTLAQRLKGKEGRFRGNLS---------------GKRVNFSARTVISPD 335
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELYVCRKGGLVRIR 391
P I + E+G+P +A L + E++ +N+E+L + EK G YV G RIR
Sbjct: 336 PMISINEVGVPIAIAMELTVPEKVTEFNFEKLKERV-LNGPEKYPGANYVIDPEG-KRIR 393
Query: 392 RIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINP 443
+++ L++G + R L DGDIVL NR PS+H S++A V+V+P + +N
Sbjct: 394 LMESNLKTIAEKLDIGWTVERHLEDGDIVLFNRQPSLHRMSIMAHRVRVMPYRTF-RLNL 452
Query: 444 LCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAH 503
C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G +++ QD ++ +
Sbjct: 453 SVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPIIAGIQDHISGGY 512
Query: 504 LLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLPPDF---- 556
LL + + L+++Q+ F + PD F+ + +WSGK +FS+LLP D
Sbjct: 513 LLTREGAYFTRLEVEQMIAFAGIDVDKLPEPDKFE-NGQPLWSGKTVFSLLLPSDLTIWY 571
Query: 557 -------------------EYTFPSKD----------VYISGGKLISA--EGSSWLRDYE 585
E P + VYI G+L+S + + + R+ +
Sbjct: 572 RNKLCDEPERCEALEKLIEEKLLPDPEEVRKLACDGFVYIQNGRLLSGAIDKTVYGRE-D 630
Query: 586 GNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G L +++ Y ++ FL + ++ RG T ++ D L + R + EI
Sbjct: 631 GKLLDVIVREYGVERARQFLDQVTRLTIWVITHRGFTTAIDDEDLPEEALDR---IKEI- 686
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDA 702
REA++ + L+ A L G+ L + E + A L++A +A
Sbjct: 687 --AREAEE-----------KVQKLIEAYKRGELEPLPGKSLEETLESRIMAVLAEARDNA 733
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
K +A +Y N + M K G++G +L + Q + LG Q +R
Sbjct: 734 GK--------VAERYLGMGNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRG--- 782
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---D 819
+ GD A+ + V NS+ +GL P E F H++ R+ D A
Sbjct: 783 YRGRVLTHFKPGDLGARARGF-----VTNSYKSGLTPQEYFFHAMGGRE-GLVDTAVRTA 836
Query: 820 LPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 837 QSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFKYGEDGV 877
>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
Length = 886
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 232/924 (25%), Positives = 385/924 (41%), Gaps = 151/924 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAV-----------SEVTNPRLGLPNPTNECSSCGAKD 65
++ I GI + E K+SV +I + V + RLG P C CG
Sbjct: 10 ISRIKFGILSPDEIRKMSVTQIFSSEVYDNDGSPIDGGVMDRRLGAIEPGETCPICG-NT 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR-KERQKGA----------- 113
R +C GHFG I+ ++H F I L + C C ++ E +KG
Sbjct: 69 RDSCPGHFGHIELAKPVIHAGFAKQILIYLKATCRNCGRLKIPEEEKGEYLRLLSDLQEL 128
Query: 114 GSS------------RKEQPRVCKYC--------VRNPAQWYP---RMRFKLSSKDLSGK 150
G+ R C +C + P +Y R KL+ ++ G+
Sbjct: 129 GAPYLIKRFHEYIRRRASTADTCPHCGAKQYKVKLEKPHTFYEQTERGLLKLTPSEVRGR 188
Query: 151 TAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI 210
EK+S + KL G P N +P VL+ V + V PS+
Sbjct: 189 L-------EKISNDDVKL----LGGDP-------NDTRPEWMVLTVLPVPP--RSVRPSV 228
Query: 211 R-EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE 269
E I S+D K + N+R+ E + + D W + Y ++
Sbjct: 229 LLETGIRSEDDLTHKLVDIIRTNNRLREHVEGGA-PSAIIEDEWELLQYHITTYFDNEVP 287
Query: 270 LSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
L ++K K+ + + ++ K+ ++ + GKR D R V
Sbjct: 288 -------GLPVAKHRSGKTLKGIAQRLKGKEG----------RFRNNLRGKRVDFSARTV 330
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELYVCRKGGL 387
++ DP++ + E+G+P VA+ L I ER+ WN E + + EK G Y+ R G
Sbjct: 331 ISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLV-LNGPEKWPGANYIVRPDGR 389
Query: 388 -VRIRRID------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
+ ++ +D +LE G I+ R L DGDIVL NR PS+H S++A V+VLP +
Sbjct: 390 KISLKFVDRKAAAESLESGFIVERHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTF-R 448
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N L C P++ DFDGD ++ ++PQ+ AR E L+ +++ ++ + G ++ QD ++
Sbjct: 449 LNLLVCPPYNADFDGDEMNLHVPQSEEARAEARLLMLVERHILTPRYGGPIIGGLQDYIS 508
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A++L + LL + L ++ P+ + ++W+GKQL S+ LP DF Y
Sbjct: 509 GAYILTSKTTLLDKDDVVDLLSSTGYKGELPEPAILKPRALWTGKQLVSLFLPKDFNYKR 568
Query: 561 PSKD------------------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRY-RDK 599
SK V I G L+ + +S R+ +L +LIK Y D
Sbjct: 569 NSKIGSAAALRCIDEDCPHDSLVIIRNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDY 628
Query: 600 VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQL 659
F+ ++ G+T+S + L L + +R + EI G ++ ++L
Sbjct: 629 GRMFMDRVYKMFIRMSEKYGLTMSYTHLTLPEEARNR---LSEIIAGKKK-----EVEEL 680
Query: 660 MVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGS 719
+ L++ +L+ E + LS+ +D+ V L
Sbjct: 681 ISKYKRGELLARPGKTVEETLEDEIIDI-------LSKKLLDSVAEVITPYFTLV----- 728
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
N ++ M + G++GN + L Q + LG Q R A + + D
Sbjct: 729 --NPVVIMARTGARGNPVNLTQMAALLGQQTVRGK---RLTRGYLGRALSHFKPEDLGPE 783
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCT 837
A+ +I S F+ GLNP+E F H+ R+ G + RRL+ ++DL
Sbjct: 784 ARGFIASG-----FVHGLNPVEMFFHAAAGREGLIDTAVRTSQSGYMQRRLINALQDLRV 838
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGT 861
YDG+VR G +IVQ Y +G
Sbjct: 839 EYDGSVRLTTG-EIVQLLYGEDGV 861
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 222/906 (24%), Positives = 384/906 (42%), Gaps = 161/906 (17%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------ 99
+PR G+ + T+ C +C A C GHFG I+ + H FL+ K+L +C
Sbjct: 60 DPRQGVIDRTSRCQTC-AGSMTECPGHFGHIELAKPVFHCGFLTKTIKILRCVCFYCSKL 118
Query: 100 ---PKCKTIRKERQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIV 155
P I++ K G RK+ V C +N + + K+ ++ + A
Sbjct: 119 LVSPNNPKIKEIVAKTRGQPRKQLSFVYDLCKGKNICEGGDEIDTKMGVENQGAEEAAKK 178
Query: 156 E-------IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDP 208
+ + + L + W + D+Q++ + VL+ ++V + + V
Sbjct: 179 QGHGGCGRYQPSIRRSGLDLTAE-WKHVNEDSQEK-------KVVLTAERVWEIFRQV-- 228
Query: 209 SIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV 261
S E IL D F K PV P R V + + D+ T L +V
Sbjct: 229 SEEECQILGMDPRFTKPDWMLITVLPVPPLAVRPAVVMFGSARNQ----DDLTHKLADIV 284
Query: 262 DYRGRDIE------LSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNS 307
I +H++ + LK+ + H + R R K+I
Sbjct: 285 KANNELIRNEQSGAAAHIIAETLKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLK 344
Query: 308 SGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV 367
S I+ ++GKR D R V+T DPN+++ E+G+P +A+ L E + +N +++
Sbjct: 345 SKEGRIRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRSIAQNLTFPEIVTPFNMDKMHE 404
Query: 368 CISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINR 416
+ + G Y+ R G RID L+ G + R + +GDI++ NR
Sbjct: 405 LVRRGNNQYPGAKYIIRDNG----ERIDLRFHPKASDLHLQCGYRVERHVRNGDIIVFNR 460
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
P++H S++ +KVLP S+ +N +P++ DFDGD ++ ++PQ++ R E+ +L
Sbjct: 461 QPTLHKMSMMGHRIKVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLA 519
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDI 533
+ +Q+I QS + ++ + QD+LTA + + + L QM + MF P + P I
Sbjct: 520 MVPRQIITPQSNKPVMGIVQDTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDGKMPMPAI 579
Query: 534 FKISKDSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLIS 574
K +W+GKQ+FS+++P PD E P K V I G+LIS
Sbjct: 580 LK--PKPLWTGKQIFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELIS 637
Query: 575 A------EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDL 627
G+S G+L + +V Y Q V+ WL + G T+ + D
Sbjct: 638 GIVCKKTVGAS-----SGSLMHVVFNELGHQVAGLFYGHIQTVVNAWLLLEGHTIGIGD- 691
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH--- 684
+ + K +I + +A+ + ++ +H + L + + ++ + +
Sbjct: 692 -----TIADKQTFIDIKNTIEKAKH--DVIDVIEKAHNDELEPSPGNTLRQTFENQVNRI 744
Query: 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
L+ + ++ A +Q S+ F N+ AM +G+KG+ + + Q
Sbjct: 745 LNDARDKTGASAQKSLSEF------------------NNFKAMVVSGAKGSKINISQVIA 786
Query: 745 CLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTG 796
C+G Q+ P FR PH + Y P + VENS+L G
Sbjct: 787 CVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAG 830
Query: 797 LNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
L P E F H++ R+ G + RRL+ M + AYDGTVRN+ +Q++Q
Sbjct: 831 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNS-NSQVIQL 889
Query: 855 SYNIEG 860
Y +G
Sbjct: 890 RYGEDG 895
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 234/954 (24%), Positives = 394/954 (41%), Gaps = 168/954 (17%)
Query: 23 GISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRKACE 70
G+ + E ++SV E G + + +PR G+ + T+ C +C A + C
Sbjct: 1 GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMTECP 59
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRN 130
GHFG I + H F++ K+L +C C + P++ + +++
Sbjct: 60 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIVMKS 110
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP------ 177
Q PR R GKT D L+K N+++ P+ G + P
Sbjct: 111 KGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTG 168
Query: 178 FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CF 226
D E V + + ++S ++V +LK + + E FIL D + +
Sbjct: 169 LDLTAEWKHVNEDTQEKKIIVSAERVWEILKHI--TDEECFILGMDPKYARPDWMIVTVL 226
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQDCLKI 280
PV P R V + + D+ T L ++ R E S H++Q+ +K+
Sbjct: 227 PVPPLAVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELRKNEASGAAAHVIQENIKM 282
Query: 281 SKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
+ H+ D QK K I I+ ++GKR D R V+T
Sbjct: 283 LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP 342
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIR 391
DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 343 DPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG----E 398
Query: 392 RIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+ +
Sbjct: 399 RIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RM 457
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA
Sbjct: 458 NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 517
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP----- 553
+ + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 518 VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSLIIPGNVNM 575
Query: 554 -------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRYR 597
PD E P K + K++ G L G+L ++
Sbjct: 576 IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 635
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
D F Q V+ WL + G ++ + D + + EI +++A+D
Sbjct: 636 DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYT------EIQTAIKKAKDDV--- 686
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL---- 713
+N + A + E E L Q + + D ++
Sbjct: 687 -------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKTGGS 728
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 729 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIK--- 785
Query: 768 WNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 786 -------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGY 832
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 833 IQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 885
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 235/937 (25%), Positives = 392/937 (41%), Gaps = 161/937 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECSSCGAKDRKA 68
I GI + E + SV +I + V + +P++G + +C +C +
Sbjct: 18 IQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTC-LEGMSE 76
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFG I+ + H F+ + K+L +C C ++ + + P V
Sbjct: 77 CPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMR---------DPMVANAVR 127
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN--KKLPDDY-------------- 172
R AQ + + L+ K I E DE K N D+Y
Sbjct: 128 RIKAQHRLKAIWALA------KDKKICEPDELDEKDNGDATFEDEYLQEKKATMKGHGGC 181
Query: 173 ------W--------GFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSK 218
W G + E+ + +P + +S +V +LK + P L+
Sbjct: 182 GHEQPVWRKKGLKLLGVWKPTDKGEDEATEPEERNVSPGEVYNILKKITPEDLHIMGLNA 241
Query: 219 DAP-----FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS 271
D L PV P R + + + D+ T L +++ + G R +E
Sbjct: 242 DYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSE---DDLTYKLSQIIKFNGVVRRMEAE 298
Query: 272 ----HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV----------- 316
+V + + + H+ D A + + + G R IK +
Sbjct: 299 GVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQ------KGGRAIKAIRARLKGKEGRM 352
Query: 317 ---VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FR 372
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N L ++
Sbjct: 353 RGNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGP 412
Query: 373 LLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHP 422
G Y + G R+D +L+ G I+ R L DGD VL NR PS+H
Sbjct: 413 ATYPGARYYVKDTG----ERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHK 468
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S+++ VK++ S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ + +Q+
Sbjct: 469 MSMMSHRVKLMNYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQI 527
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ Q+ + ++ + QD+L L LQ+Q + ++ P P IFK
Sbjct: 528 VSPQANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGSIPPPAIFK--PK 585
Query: 540 SVWSGKQLFSMLLPPDFEYTF-----PS------KDVYISGGKLISAEGSSWLRDYEGNL 588
+W+GKQL SM +P T+ PS ++V I G+L+ + N
Sbjct: 586 PMWTGKQLLSMTIPKGINITYKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645
Query: 589 FQYLIKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
++I R V DF A Q V+ WL G +V + D + K M I
Sbjct: 646 LVHVIFRELGHVAARDFFSAVQRVVNYWLLHYGFSVGIGD------TIVDKATMAGITNR 699
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA++ Q+L+ ++ N M K + R + E +A L++A D
Sbjct: 700 MVEAKEAV--QKLVQEAEAN-RMKPKPGMTIRE------TLEASIAAELNKAR-DWTGKT 749
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSC 765
D NL DN++ M +G+KG+ + + Q S +G Q ++F F H S
Sbjct: 750 TQD--NL-----KADNNVKQMVVSGAKGSFINISQMSGVVGQQFVEGKRIAFGFRHR-SL 801
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
+++ G + VENS+L GL P E + H++ R+ G
Sbjct: 802 PHFSKDDYGPESR--------GFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGY 853
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M DL AYDGTVRN+ N++VQF Y +G
Sbjct: 854 IQRRLVKAMEDLKVAYDGTVRNSV-NEVVQFLYGEDG 889
>gi|337283878|ref|YP_004623352.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
gi|334899812|gb|AEH24080.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
Length = 907
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 234/938 (24%), Positives = 405/938 (43%), Gaps = 161/938 (17%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S +E+ V + R+G+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR---------KERQKGAGS 115
+ C GHFG I+ ++H F I ++L S C +C I+ ++ + AG+
Sbjct: 67 AGE-CPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLELAGN 125
Query: 116 SRKEQPRVCK----------YCVRNPAQWYPRMRFKLSS------KDLSGKTAIIVEIDE 159
R E ++ K C A +P ++F+ + KD G +
Sbjct: 126 RRSEVNKILKEIHKKARERMVCPHCGAPQFP-IKFEKPTIYWEIRKDEQGNEYRHRMMPT 184
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSK 218
++ + +K+PD +P E S +P VL+ V + V PSI E I ++
Sbjct: 185 EVRDRLEKIPDKD---LPLLGLHPEKS-RPEWMVLTVLPVPPVT--VRPSITLETGIRAE 238
Query: 219 DAPFLKCFPVTPNNHRVTEVPHAFSHEKKL--FFDNWTRHLKKMVDYRGRDIELSHLVQD 276
D K + N+R+ + A + + + +D H+ ++ E S +
Sbjct: 239 DDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINN-----ETSGIPPA 293
Query: 277 CLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNI 336
K + + R E R + N+ GKR + R V++ DP I
Sbjct: 294 KHKSGRTLKTLAQRLKGKEGRFRGNLS---------------GKRVNFSARTVISPDPMI 338
Query: 337 KLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELYVCRKGGLVRIRRID 394
+ E+G+P ++A L + E++ +N E+L + EK G YV G RIR +D
Sbjct: 339 SINEVGVPIEIAMELTVPEKVTEFNIEKLRKMV-LNGPEKYPGANYVIDPEGR-RIRIMD 396
Query: 395 A--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCC 446
+ L++G + R L DGDIVL NR PS+H S++A V+V+P + +N C
Sbjct: 397 SNRELLAERLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTF-RLNLAVC 455
Query: 447 SPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM 506
P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G ++ QD ++ +LL
Sbjct: 456 PPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLT 515
Query: 507 EDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLPPDF------- 556
+ + +++Q+ MF PD ++ K +WSGK +FS+LLP D
Sbjct: 516 REGAYFTREEVEQMLMFAGVDVKELPEPDKYENGK-PLWSGKTIFSLLLPDDLTVWYRNK 574
Query: 557 ----------------EYTFPSKD----------VYISGGKLISA--EGSSWLRDYEGNL 588
E P + VYI GKL+S + ++ R+ +G +
Sbjct: 575 LCDEPERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAYGRE-DGII 633
Query: 589 FQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+++ Y ++ FL ++ ++ +G T ++ D L + R + EI +
Sbjct: 634 LDLIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPQEAIDR---IKEI---I 687
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKH 705
REA++ + L+ A L G+ + + E + A L++A +A
Sbjct: 688 REAEE-----------RVERLIEAYRRGELEPLPGKTIEETLESKIMAVLAEARDNA--- 733
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
++A +Y DN + M K G++G +L + Q + LG Q +R
Sbjct: 734 -----GSVAERYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRG---YRG 785
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPG 822
+ GD A+ + V NS+ +GL P E F H++ R+ D A G
Sbjct: 786 RVLTHFKPGDLGARARGF-----VVNSYKSGLTPQEYFFHAMGGRE-GLVDTAVRTAQSG 839
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 840 YMQRRLINALQDLKVDYDGTVRDPNG-VIVQFRYGEDG 876
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 229/968 (23%), Positives = 398/968 (41%), Gaps = 177/968 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGIISPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLL---------VNPHNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDE-KLSKKN-KKLPDDY------------- 172
++ Q R+ F DL I DE ++K+N + P D
Sbjct: 126 MKTKGQPRKRLAFVY---DLCKSKNICEGGDEMDINKENTENQPQDRKPGHGGCGRYQPN 182
Query: 173 -----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP 221
W + D+Q++ + +LS ++ +LK + E FIL D
Sbjct: 183 LRRSGLDVTAEWKHVNEDSQEK-------KTILSAERAFEILKHI--KDEESFILGMDPK 233
Query: 222 FLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE----- 269
F + PV P + R + + + + D+ T L ++ +
Sbjct: 234 FARPDWMIVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKSNNELLRNEQSG 289
Query: 270 -LSHLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGK 320
+H++ + +K+ + H+ D QK K I I+ ++GK
Sbjct: 290 AAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
Query: 321 RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGEL 379
R D R V+T DPN+++ ++G+P +A+ L E + +N +++ V + + G
Sbjct: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAK 409
Query: 380 YVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ R G RID L+ G + R + DGD+V+ NR P++H S++
Sbjct: 410 YIVRDNG----ERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHR 465
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 466 VKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANK 524
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QD+LTA + + V + QM L MF P + P I K +W+GKQ
Sbjct: 525 PVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILK--PKPLWTGKQ 582
Query: 547 LFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEG 586
LFS+++P PD E P K + K++ G L G
Sbjct: 583 LFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 642
Query: 587 NLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+L + +V Y Q V+ WL + G ++ + D + EI
Sbjct: 643 SLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQK 696
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 697 AIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--- 744
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---F 759
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 745 -----GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 799
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 800 PHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 843
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGS 875
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P
Sbjct: 844 VKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIK 902
Query: 876 LSACAISE 883
+S A +
Sbjct: 903 VSNKAFEK 910
>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
[Nitrosopumilus maritimus SCM1]
gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
SCM1]
Length = 1263
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 240/937 (25%), Positives = 391/937 (41%), Gaps = 167/937 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ GI + + TE K SV EI A + + RLG P +C +CG
Sbjct: 9 IDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSI---CPKCKTIRKE-------RQKGAGS 115
+ C GHFG ++ +LH F+ +I KLL S C + K +++ ++K A
Sbjct: 69 AR-CPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLNVFKTIKEKHAAY 127
Query: 116 SRKEQPRV-------------CKYCVRNPAQW-YPRMRFKLSSKDLSGKTAIIVEIDEKL 161
+ Q R+ C +C + + + + + ++ + + I E+
Sbjct: 128 TVISQKRIPEQIIEKAKKAKECPHCGKTQYELIFTKPTIFVEKTEIGEHRLLPITIRERF 187
Query: 162 SKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REEFILSKDA 220
S+ + D+ + +D + +P VL V + V PSI E I S+D
Sbjct: 188 SQ----IIDEDLELLSYDPV----TARPEWFVLQAFPVPPVT--VRPSIILETGIRSEDD 237
Query: 221 PFLKCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGRD 267
K + N R+ E A + +FDN + + GR
Sbjct: 238 LTHKMVDIIRVNQRLKESKDAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHHRSGR- 296
Query: 268 IELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
L L Q R E R + ++ GKR D R
Sbjct: 297 -PLKTLTQ--------------RLKGKEGRFRGSLS---------------GKRVDFSSR 326
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGG 386
V++ DPN+ L E+G+P VA +L I E + WN ER+ + I+ G Y+ R G
Sbjct: 327 TVISPDPNLDLSEVGVPEAVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGVNYIVRPDG 386
Query: 387 LVRIRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS 437
V+IR + LE+G ++ R L DGDIV+ NR PS+H S++A V+VLP
Sbjct: 387 -VKIRLDFVEDRSTIAETLEIGYLVERHLADGDIVMFNRQPSLHQMSIMAHYVRVLP-GK 444
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
++P C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G ++ +D
Sbjct: 445 TFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYGGPIIGALRD 504
Query: 498 SLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDF 556
+T A+LL +D +L+ + L M + P +KD ++GKQLFS+ LP DF
Sbjct: 505 FVTGAYLLTKDDTVLTVQEFSNLAMLGGYTDPLPKPGTKTKDGPAYTGKQLFSLFLPKDF 564
Query: 557 EYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRDKV-LDF 603
Y S KDV I G+LIS + SS + ++ + K Y + V F
Sbjct: 565 NYVITSKWSKGTKGQAKDVVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNAVGKSF 624
Query: 604 LYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS 663
L + ++ ++++ G + DL + ++ ++D+I Q T + + D
Sbjct: 625 LNSILIMVKQFITHYGFSYGYGDLIVPDK--DKQQILDDI-------QGTYDIVSDLTDQ 675
Query: 664 HMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNS 723
+ + TR ++ E AL V+ + A DN+
Sbjct: 676 YKKGTLKL-----TRGMKPEE---------ALEAYIVNELGKARDKAGSSANDCLPADNA 721
Query: 724 LLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY 783
M G++G+ L + Q + LG Q NRL G N Y
Sbjct: 722 GKIMATTGARGSSLNVGQMAGALGQQSRRG---------------NRLHEGYNNRALTHY 766
Query: 784 I-----PSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMR 833
P A V++++ GL+ LE F H++ R+ D A G + RRL+ +
Sbjct: 767 QEHDDNPDAHGFVKSNYREGLSALEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINALE 825
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
+ YDGTVR+ +G+ IVQF Y +G + G+
Sbjct: 826 HIRLEYDGTVRDPHGH-IVQFLYGEDGIDVQKSDHGE 861
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 231/951 (24%), Positives = 395/951 (41%), Gaps = 152/951 (15%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIKYPETYEGGRPKIGGLMDPRQGVMDRMSRCQTC-AGNMS 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H FL+ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVYHVGFLTKTIKILRCVCFFCSKMLVSPSNAKIKEIITKSRGQPRK 134
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP 177
V C +N + M + D G + + + P+ +
Sbjct: 135 RLTFVYDLCKGKNICEGGDEMDITKENPDNPGGGGKDKKPGHGGCGRYQ--PNIRRAGLD 192
Query: 178 FDAQ-QEENSVKPNRKV-LSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CFPV 228
A+ + N +K+ LS ++V +LK + + E IL D F + PV
Sbjct: 193 LTAEWKHTNEDNQEKKISLSAERVWEILKHI--TDEECLILGMDPKFARPDWMLVTVLPV 250
Query: 229 TPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCLKISK 282
P + R V + + + D+ T L ++ +H++ + +K+ +
Sbjct: 251 PPLSVRPAVVMYGSARNQ----DDLTHKLADIIKSNNELTRNEQAGAAAHIISENMKMLQ 306
Query: 283 LH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
H L ++ +K ++ K + G I+ ++GKR D R V+T
Sbjct: 307 FHVATFIDNDMPGLPRAMQKSGKPLKAVK-ARLKGKEGR--IRGNLMGKRVDFSARTVIT 363
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R G
Sbjct: 364 PDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYIIRDNG---- 419
Query: 391 RRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
RID L+ G + R + DGD+V+ NR P++H S++ VKVLP S+
Sbjct: 420 ERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-R 478
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+I Q+ + ++ + QD+LT
Sbjct: 479 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDTLT 538
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP---- 553
A + + V L QM + MF P + P I K +W+GKQ+FS+++P
Sbjct: 539 AVRKMTKRDVFLDQEQMMNILMFLPIWDGKMPIPAILK--PRPLWTGKQVFSLIIPGNVN 596
Query: 554 --------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYR 597
PD E P K V K++ G L G+L +
Sbjct: 597 MIRTHSTHPDDEDDGPYKWVSPGDTKVMVEHGELIMGILCKQSLGTSAGSLLHICMLELG 656
Query: 598 DKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
+V Y Q V+ WL + G ++ + D + EI +++A++ +
Sbjct: 657 HEVCGQFYGNIQTVINHWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAKE--DV 708
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
+++ +H N + + R ++E Q + L+ A A K
Sbjct: 709 IEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------GGSAKK 753
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNR 770
++ N+L AM AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 754 SLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK------ 807
Query: 771 LRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
Y P + VENS+L GL P E F H++ R+ G + R
Sbjct: 808 ----------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQR 857
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
RL+ M + YDGT+RN+ G Q++Q Y +G + T E P LS
Sbjct: 858 RLIKAMESVMVHYDGTIRNSVG-QLIQLRYGEDGLAGETVEFQSLPTIKLS 907
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 226/961 (23%), Positives = 393/961 (40%), Gaps = 166/961 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + C +C A +
Sbjct: 12 VQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNARCQTC-AGNMT 70
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 71 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLL---------VSPTNPKIKEVV 121
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNK--KLPDDYWG---FIPFDAQQ 182
+++ Q PR R GK D + K+ + K + G + P +Q
Sbjct: 122 MKSKGQ--PRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPSIRRQ 179
Query: 183 ----------EENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------C 225
+ + +++ ++V +LK + + E FIL D F +
Sbjct: 180 GLDLTAEWKHANEDTQEKKIIITAERVWEILKHI--TDEESFILGMDPKFARPDWMIVTV 237
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG---RDIEL---SHLVQDCLK 279
PV P + R V + + D+ T L ++ R+ +L +H++ + ++
Sbjct: 238 LPVPPLSVRPAVVMFGAAKNQ----DDLTHKLADIIKANNELMRNEQLGAAAHVLAENIR 293
Query: 280 ISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
+ + H+ D + QK K I I+ ++GKR D R V+T
Sbjct: 294 LLQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 353
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 354 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNG---- 409
Query: 391 RRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 410 ERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-R 468
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LT
Sbjct: 469 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLT 528
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP---- 553
A + + V L+ Q+ L MF P + P I K +W+GKQ+F++++P
Sbjct: 529 AVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILK--PQPLWTGKQIFTLIIPGNVN 586
Query: 554 --------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRY 596
PD E P K + K++ G L G+L +++
Sbjct: 587 MIRTHSTHPDEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELG 646
Query: 597 RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
+ F Q V+ WL + G ++ + D D +
Sbjct: 647 HETAGRFYGNIQTVINNWLLLEGHSIGIGDTI----------------------ADPQTY 684
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL--- 713
Q++ ++ AKD + ++ E L Q + + D ++
Sbjct: 685 QEI-----QRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGG 739
Query: 714 -AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCA 766
A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 740 SAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK-- 797
Query: 767 AWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 798 --------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETG 843
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
+ RRL+ M + YDGTVRN+ G Q++Q Y +G + T E + P LS A
Sbjct: 844 YIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFE 902
Query: 883 E 883
+
Sbjct: 903 K 903
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 207 bits (527), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 228/977 (23%), Positives = 398/977 (40%), Gaps = 193/977 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILAPDEIRRMSVTEGGIRFSETYEGGRPKLGGLMDPRQGVMDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLL---------VSPTNPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
+++ Q PR R GK + + K+N P+
Sbjct: 126 MKSKGQ--PRKRLTFVYDLCKGKNICEGGDEMDIMKENPDDPNQQQPRKAGHGGCGRYQP 183
Query: 173 ------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
W + D+Q++ + LS ++V +LK + + E +IL D
Sbjct: 184 NIRRAGLDLTAEWKHVNEDSQEK-------KIALSAERVWEILKHI--TDEECYILGMDP 234
Query: 221 PFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE---- 269
F + PV P R V + + + D+ T L ++ +
Sbjct: 235 KFARPDWMIVTVLPVPPLAVRPAVVMYGSARNQ----DDLTHKLADIIKANNELMRNEQA 290
Query: 270 --LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV 316
+H++ + +K+ + H L ++ +K ++ K + G I+
Sbjct: 291 GAAAHVILENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGN 347
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++ + L+ +
Sbjct: 348 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKM-----YELVRR 402
Query: 377 GE------LYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSI 420
G Y+ R G RID L+ G + R + DGD+V+ NR P++
Sbjct: 403 GNSQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTL 458
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +
Sbjct: 459 HKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPR 517
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKIS 537
Q+I Q+ + ++ + QD+LTA + + V L QM L MF P + P I K
Sbjct: 518 QIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMK-- 575
Query: 538 KDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS------- 578
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 576 PKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPFKWISPGDTKVMVEHGELVMGILC 635
Query: 579 -SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSR 636
L G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 636 KKTLGTSAGSLLHICMLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL- 694
Query: 637 KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 695 -----EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILN 740
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A A K ++ N+L AM +GSKG+ + + Q C+G Q+
Sbjct: 741 DARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRI 792
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVT 808
P FR PH + Y P + VENS+L GL P E F H++
Sbjct: 793 PFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMG 836
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG 866
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G T
Sbjct: 837 GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETV 895
Query: 867 EIGDQPVGSLSACAISE 883
E P LS A +
Sbjct: 896 EFQSLPTIKLSNKAFEK 912
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 207 bits (527), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 227/968 (23%), Positives = 399/968 (41%), Gaps = 177/968 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLL---------VSPHNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDE-KLSKKN-KKLPDDY------------- 172
++ Q R+ F DL I DE ++K+N ++ P D
Sbjct: 126 MKTKGQPRKRLTFVY---DLCKSKNICEGGDEMDINKENSEQQPTDRKPGHGGCGRYQPN 182
Query: 173 -----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP 221
W + D+Q++ + VL+ ++ +LK + + E FIL D
Sbjct: 183 LRRSGLDVTAEWKHVNEDSQEK-------KIVLTAERAWEILKHI--TDEESFILGMDPK 233
Query: 222 FLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE----- 269
F + PV P + R + + + + D+ T L ++ +
Sbjct: 234 FARPDWMVVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKSNNELLRNEQAG 289
Query: 270 -LSHLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGK 320
+H++ + +K+ + H+ D QK K I I+ ++GK
Sbjct: 290 AAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGK 349
Query: 321 RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGEL 379
R D R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G
Sbjct: 350 RVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAK 409
Query: 380 YVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ R G RID L+ G + R + DGD+V+ NR P++H S++
Sbjct: 410 YIVRDNG----ERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHR 465
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ +
Sbjct: 466 VKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANK 524
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QD+LTA + + V + QM + MF P + P I K +W+GKQ
Sbjct: 525 PVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILK--PKPLWTGKQ 582
Query: 547 LFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEG 586
+FS+++P PD E P K + K++ G L G
Sbjct: 583 IFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAG 642
Query: 587 NLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+L + +V Y Q V+ WL + G ++ + D + EI
Sbjct: 643 SLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQK 696
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 697 AIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--- 744
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---F 759
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 745 -----GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 799
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 800 PHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 843
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGS 875
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P
Sbjct: 844 VKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIK 902
Query: 876 LSACAISE 883
LS A +
Sbjct: 903 LSNKAFEK 910
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 227/960 (23%), Positives = 398/960 (41%), Gaps = 162/960 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHCGFITKTIKILRCVCFYCSKML---------VSPHNPKIKEII 125
Query: 128 VRNPAQWYPRMRFKLS---SKDL-SGKTAIIVEIDEKLSKKNKKLPDDYWG-FIP----- 177
++ Q R+ F SK++ G + + + + NKK G + P
Sbjct: 126 MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDITKEGQEQDPNKKPGHGGCGRYQPNLRRS 185
Query: 178 -FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------C 225
D E V + + L+ ++ +LK + + E FIL D F +
Sbjct: 186 GLDVTAEWKHVNEDSQEKKIALTAERAWEILKHI--TDEESFILGMDPKFARPDWMIVTV 243
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCLK 279
PV P R V + + + D+ T L ++ + +H++ + +K
Sbjct: 244 LPVPPLAVRPAVVMYGSAKNQ----DDLTHKLSDIIKSNNELLRNEQAGAATHVISENIK 299
Query: 280 ISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
+ + H + K+ +K ++ K + G I+ ++GKR D R
Sbjct: 300 MLQFHVATLVDNDMPGMPKAMQKSGKPLKAIK-ARLKGKEG--RIRGNLMGKRVDFSART 356
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLLEKGELYVCRKGGL 387
V+T DPN+++ ++G+P +A+ L E + +N +++ + G Y+ R G
Sbjct: 357 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNTRYPGAKYIVRDNG- 415
Query: 388 VRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS 437
RID L+ G + R + DGD+V+ NR P++H S++ VKVLP S+
Sbjct: 416 ---DRIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 472
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD
Sbjct: 473 F-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQD 531
Query: 498 SLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP- 553
+LTA + + V + QM + MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 TLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILK--PKPLWTGKQIFSLIIPG 589
Query: 554 -----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIK 594
PD E P K + K++ G L G+L +
Sbjct: 590 NVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICML 649
Query: 595 RYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
+V Y Q V+ WL + G ++ + D + EI +R+A++
Sbjct: 650 ELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYM------EIQSSIRKAKE- 702
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
+ +++ +H N + + R ++E Q + L+ A
Sbjct: 703 -DVIEVITKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------GGS 746
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 747 AKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK--- 803
Query: 768 WNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 804 -------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGY 850
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
+ RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P LS A +
Sbjct: 851 IQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEK 909
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 218/891 (24%), Positives = 396/891 (44%), Gaps = 126/891 (14%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P+LG + +C++C + + C GHFG I+ + H F+ I K+L S+C C
Sbjct: 55 LNDPKLGSIDRGTQCATC-KEVPEICPGHFGHIELAQPVFHVGFIIKIKKILESVCHNCG 113
Query: 104 TIRKERQKGAGSS--RKEQPR-----VCKYC-------VRNPAQ---WY---PRMRFKLS 143
I + A + R P+ V K C V P + Y P+ K+
Sbjct: 114 KILADESNPAFAQAIRLRDPKRRFEAVHKICKGISICQVDAPPEDDGGYGPDPKAALKVK 173
Query: 144 SKDLSGKTAIIVEIDE---KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNR-----KVLS 195
G I+ ++ + K K +D G A+ E+ + P + +S
Sbjct: 174 GHGGCGNAQPIIRKEQLRLNGTIKVAKSDEDEKGS---KAESEKIPITPQYALNVFRAIS 230
Query: 196 CKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHR----VTEVPHAFSHEKKLFFD 251
++++ L + D R E+++ L PV P R V E L +
Sbjct: 231 DEELARLGLNAD-YARPEWMV------LTVLPVPPPAVRPSISVDGTSQGMRSEDDLTY- 282
Query: 252 NWTRHLKKMVDYRGRDIELS--HLVQDCLKISKLHLDKSSRKDSAEV--------RQKKN 301
+ ++ + R ++E S H+ ++ +++ + H+ D A V R K+
Sbjct: 283 KLSDIIRANSNVRRCEMEGSPQHVTEEFVQLLQFHVATYMDNDIAGVPRALQKSGRPVKS 342
Query: 302 IDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWN 361
I S ++ ++GKR D R V+TGDPN+ L ++G+P +A+ L E +N++N
Sbjct: 343 IRARLKSKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIAKTLTFPETVNAYN 402
Query: 362 WERLSVCISFRLLE-KGELYVCRKGG----LVRIRRIDALELGDIIYRPLTDGDIVLINR 416
++L + E G YV R G L R + L+ G + R + DGD ++ NR
Sbjct: 403 IQKLQELVRNGPNEHPGARYVIRGEGERIDLRRAKNDVQLQYGWKVERHIVDGDYIIFNR 462
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
PS+H S++ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E++EL
Sbjct: 463 QPSLHKESMMGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVSELC 521
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFK 535
A+ K +++ Q L+ + QD++ +++ V++ + + + ++ P+ + P
Sbjct: 522 AVPKNIVSPQKNGPLMGIVQDTMAGIYMMTRRDVMIDYENVMNILLWLPNWDGVVPQPAI 581
Query: 536 ISKDSVWSGKQLFSMLLPP-------DFEYT--FPSKD---VYISGGKLISAE------G 577
+ +W+GKQ+ S+ LP D E T P K+ + + G L+ G
Sbjct: 582 LRPKPMWTGKQIISLALPAGLNLQRMDDENTPHIPLKEKKGLLVQNGDLVLGRFVKKIVG 641
Query: 578 SSWLRDYEGNLFQYLIKRYRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
+S +G + Y+ + ++F AAQ V+C WL G +V + D +
Sbjct: 642 AS-----QGGVVHYIFNDNGSEGPKAAVEFFNAAQRVVCYWLLHNGFSVGIGD------T 690
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQR 691
+ + ++I +++ +D QL+ L+ ++ +L G + ++E +
Sbjct: 691 VPNQDMANKIEAAVQKEKD-----QLLE------LVKTVENNELETLPGMTIRETFESKA 739
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
+ L A +A ++A+ N++ M ++GSKG+ + Q + +G Q S
Sbjct: 740 KSFLDNARNNA--------GDIAFNGMRACNNVGTMVQSGSKGSSTNVSQMTAAVG-QQS 790
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
L R P D + ++ + VENS+L GL P E F H++ R+
Sbjct: 791 LE--GKRLPFGFKYRTLPHFPKDDYSPASRGF-----VENSYLRGLTPHEFFFHAMGGRE 843
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 844 GLIDTAVKTAETGYIQRRLVKALEEVMVKYDGTVRNSMGD-IVQFIYGEDG 893
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 206 bits (525), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 230/962 (23%), Positives = 396/962 (41%), Gaps = 164/962 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLL---------VNPHNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDE----KLSKKNKKLPDDYWG------FIP 177
++ Q R+ F DL I DE K + +N+ D G + P
Sbjct: 126 MKTKGQPRKRLAFVY---DLCKSKNICEGGDEMDINKENAENQPQMDRKPGHGGCGRYQP 182
Query: 178 ------FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK--- 224
D E V + + +LS ++ +LK + E FIL D F +
Sbjct: 183 NLRRSGLDVTAEWKHVNEDSQEKKIILSAERAWEILKHI--KDEESFILGMDPKFARPDW 240
Query: 225 ----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLV 274
PV P + R + + + + D+ T L ++ + +H++
Sbjct: 241 MIVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKSNNELVRNEQSGAAAHVI 296
Query: 275 QDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCF 326
+ +K+ + H+ D QK K I I+ ++GKR D
Sbjct: 297 SENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N +++ V + + G Y+ R
Sbjct: 357 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDN 416
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + DGD+V+ NR P++H S++ VKVLP
Sbjct: 417 G----ERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 472
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ +
Sbjct: 473 STF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIV 531
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V + QM L MF P + P I K +W+GKQLFS+++
Sbjct: 532 QDTLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILK--PKPLWTGKQLFSLII 589
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL 592
P PD E P K + K++ G L G+L
Sbjct: 590 PGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 649
Query: 593 IKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+ +V Y Q V+ WL + G ++ + D + EI +++A+
Sbjct: 650 MLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAK 703
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + +++ +H N + + R ++E Q + L+ A
Sbjct: 704 E--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------G 746
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSC 765
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 747 GSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK- 805
Query: 766 AAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 806 ---------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAET 850
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAI 881
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P +S A
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKVSNKAF 909
Query: 882 SE 883
+
Sbjct: 910 EK 911
>gi|327401232|ref|YP_004342071.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
gi|327316740|gb|AEA47356.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus veneficus
SNP6]
Length = 871
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 222/873 (25%), Positives = 375/873 (42%), Gaps = 125/873 (14%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG+ +P C +CG K + C GHFG I+ ++H + IAKLLN+ C +C
Sbjct: 44 LMDPRLGVIDPGLRCRTCGGKAGE-CPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECG 102
Query: 104 TI------------RKERQKGAGSSR----KEQPRVCKYCVRNPAQWYPRMRFKLSSKDL 147
I ER++ G KE R+ K + P ++ K
Sbjct: 103 RILLKDDKRDKFIEEIERKRDLGQDYEDVVKEVFRITKAVKKCPHCGMDQIEIKFE---- 158
Query: 148 SGKTAIIVEIDEKLSKKN-----KKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYL 202
K E + +L+ K+ +K+PDD D + +V+P VL+ V +
Sbjct: 159 --KPTFFYEGEHRLTPKDIRERLEKIPDDDLPAFGMDPK----AVRPEWMVLTVLPVPPV 212
Query: 203 LKDVDPSI-REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV 261
V PSI E S+D K + N R E A + + + D W +
Sbjct: 213 T--VRPSIILETGQRSEDDLTHKLVDIIRINQRFMENKEAGAPQL-ILEDLWELLQYHVT 269
Query: 262 DYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKR 321
Y D E+S + + + + R E R + ++ GKR
Sbjct: 270 TYL--DNEVSGIPPARHRSGRPLKTLAQRLKGKEGRFRGSLS---------------GKR 312
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYV 381
+ R V++ DPN+ + E+G+P +AE L + + N E + R Y+
Sbjct: 313 VNFSARTVISPDPNLSINEVGVPKVIAEELTVPFYVTEKNIEEAREYV-LRTEHPKANYI 371
Query: 382 CRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
R G RIR +D LE G I+ R L DGDIVL NR PS+H S++A V+VL
Sbjct: 372 IRPDGR-RIRVMDTNREELAEKLEPGMIVERQLKDGDIVLFNRQPSLHRMSIMAHYVRVL 430
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P + +NP C P++ DFDGD ++ ++PQ++ A+ E L+A+ + +++ + G ++
Sbjct: 431 PYKTF-RLNPAVCPPYNADFDGDEMNLHVPQSLEAQAEAKVLMAVQEHILSPRFGGPIIG 489
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQ-MQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLL 552
D ++ +LL L + + M L+ P K + +W+GKQLFS++L
Sbjct: 490 GIHDHISGLYLLTRGEKLFTREEAMSILKALNITELPEP---KYKEKLLWTGKQLFSLIL 546
Query: 553 PPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWLRDYEGNLFQYLIK 594
PD F ++ D Y I G+LI + ++G + +++
Sbjct: 547 -PDISIEFKAEICQGCEECKKEECEYDAYVIIKNGELICGTIDEKAVGAFKGIIIDEIMR 605
Query: 595 RY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
+Y ++ F+ ++ + G + +SD + + S +I + EA+
Sbjct: 606 KYGSEETKRFIDNMTQLAIRAIMYTGFSFGISDEDIPEEAVS------QIHEVISEAE-- 657
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
+ L+ A + + G + + E + L +A A K
Sbjct: 658 ---------KKVEELIKAYREGNLEPMPGRSIEETLEMKIMQVLGKARDQAGK------- 701
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRL 771
+A ++ DNS + M +G++G++L L Q + C+G Q S+ + + +
Sbjct: 702 -IASRFLGMDNSAVIMAVSGARGSMLNLTQMAACIG-QQSVRGERIKRGYTYTNRTLPHF 759
Query: 772 RAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRL 828
+ GD A+ + V +S+ GLNP+E F H++ R+ D A G L RRL
Sbjct: 760 KPGDLGAKARGF-----VRSSYKEGLNPIEFFFHAMGGRE-GLVDTAVRTSQSGYLQRRL 813
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
+ ++DL YDGTVR +VQF Y +G
Sbjct: 814 INALQDLKVEYDGTVREQTSGLLVQFRYGEDGV 846
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 219/919 (23%), Positives = 383/919 (41%), Gaps = 172/919 (18%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PR G+ + + C +C A ++ C GHFG I + H FL+ K+L +C C
Sbjct: 32 LMDPRQGVIDRNSRCQTC-AGNQTECPGHFGHIDLAKPVFHIGFLTKTIKILRCVCFYCS 90
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
+ P++ + +++ Q PR R GK I E +++
Sbjct: 91 KLL---------VSPTHPKIKEIVMKSKGQ--PRKRLTFVYDLCKGKN--ICEGGDEMDI 137
Query: 164 KNKKLPDDY--------------------------WGFIPFDAQQEENSVKPNRKVLSCK 197
+ + D W + D+Q+++ + LS +
Sbjct: 138 NKENIDDQQPRKAGHGGCGRYQPNIRRAGLDLTAEWKHVNEDSQEKKIN-------LSAE 190
Query: 198 QVSYLLKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFF 250
+V +LK + + E FIL D F + PV P + R V + + +
Sbjct: 191 RVWEILKHI--TDEECFILGMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQ---- 244
Query: 251 DNWTRHLKKMVDYRGRDIE------LSHLVQDCLKISKLH-----------LDKSSRKDS 293
D+ T L ++ + +H++ + +K+ + H L ++ +K
Sbjct: 245 DDLTHKLSDIIKSNNELVRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGLPRAMQKSG 304
Query: 294 AEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQI 353
++ K+ + G I+ ++GKR D R V+T DPN+++ ++G+P +A+ L
Sbjct: 305 KPLKAIKS-RLKGKEGR--IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTF 361
Query: 354 SERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDII 402
E + +N +++ + + G Y+ R G RID L+ G +
Sbjct: 362 PEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKV 417
Query: 403 YRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYI 462
R + DGD+V+ NR P++H S++ VKVLP S+ +N C SP++ DFDGD ++ ++
Sbjct: 418 ERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHV 476
Query: 463 PQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM 522
PQ++ R E+ L +Q+I Q+ + ++ + QD+L A + + V L QM + M
Sbjct: 477 PQSMETRAEVENLHVTPRQIITPQANQPVMGIVQDTLVAVRKMTKRDVFLEKEQMMNILM 536
Query: 523 FCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYI 567
F P + P I K +W+GKQ+FS+++P PD E P K +
Sbjct: 537 FLPIWDGKMPQPAILK--PKPLWTGKQVFSLIIPGNVNLIRTHSTHPDDEDEGPYKWISP 594
Query: 568 SGGKLISAEGS--------SWLRDYEGNLFQY-LIKRYRDKVLDFLYAAQEVLCEWLSVR 618
K++ G L G+L ++ D F Q V+ WL
Sbjct: 595 GDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHDVCGQFYGNIQTVINNWLLYE 654
Query: 619 GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
G ++ + D + EI +++A++ + +++ +H N + + R
Sbjct: 655 GHSIGIGDTIADPQTYL------EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLR 705
Query: 679 SLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLK 738
++E Q + L+ A A K ++ N+L AM AGSKG+ +
Sbjct: 706 Q------TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNIN 751
Query: 739 LVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVE 790
+ Q C+G Q+ P FR PH + Y P + VE
Sbjct: 752 ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVE 795
Query: 791 NSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYG 848
NS+L GL P E F H++ R+ G + RRL+ M + YDGTVRN+ G
Sbjct: 796 NSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG 855
Query: 849 NQIVQFSYNIEGTSTPTGE 867
Q++Q Y +G T E
Sbjct: 856 -QLIQLRYGEDGLCGETVE 873
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 230/962 (23%), Positives = 396/962 (41%), Gaps = 164/962 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLL---------VSPHNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDE----KLSKKNKKLPDDYWG------FIP 177
++ Q R+ F DL +I DE K + +N+ D G + P
Sbjct: 126 MKTKGQPRKRLAFVY---DLCKSKSICEGGDEMDINKENAENQPQMDRKPGHGGCGRYQP 182
Query: 178 ------FDAQQEENSVKPN----RKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK--- 224
D E V + + +LS ++ +LK + E FIL D F +
Sbjct: 183 NLRRSGLDVTAEWKHVNEDSQEKKMILSAERAWEILKHIKD--EESFILGMDPKFARPDW 240
Query: 225 ----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLV 274
PV P + R + + + + D+ T L ++ + +H++
Sbjct: 241 MIVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKSNNELLRNEQSGAAAHVI 296
Query: 275 QDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCF 326
+ +K+ + H+ D QK K I I+ ++GKR D
Sbjct: 297 LENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N +++ V + + G Y+ R
Sbjct: 357 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDN 416
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + DGD+V+ NR P++H S++ VKVLP
Sbjct: 417 G----ERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 472
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ +
Sbjct: 473 STF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIV 531
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V + QM L MF P + P I K +W+GKQLFS+++
Sbjct: 532 QDTLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILK--PKPLWTGKQLFSLII 589
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL 592
P PD E P K + K++ G L G+L
Sbjct: 590 PGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 649
Query: 593 IKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+ V Y Q V+ WL + G ++ + D + EI +++A+
Sbjct: 650 MLELGHDVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAK 703
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + +++ +H N + + R ++E Q + L+ A
Sbjct: 704 E--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------G 746
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSC 765
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 747 GSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK- 805
Query: 766 AAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 806 ---------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAET 850
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAI 881
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P +S A
Sbjct: 851 GYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKVSNKAF 909
Query: 882 SE 883
+
Sbjct: 910 EK 911
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 223/965 (23%), Positives = 397/965 (41%), Gaps = 171/965 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVS---------PHNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLS---SKDL-SGKTAIIVEIDEKLSKKNKKLPDD------------ 171
++ Q R+ F SK++ G + + + + + ++ P
Sbjct: 126 MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSAERKPGHGGCGRYQPNLRR 185
Query: 172 -------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK 224
W + D+Q++ + L+ ++ +LK + + E FIL D F +
Sbjct: 186 SGLDVTAEWTHVNEDSQEK-------KMALTAERAWEILKHI--TDEESFILGMDPKFAR 236
Query: 225 -------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LS 271
PV P + R + + + + D+ T L ++ I +
Sbjct: 237 PDWMVVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKANNELIRNEQAGAAA 292
Query: 272 HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRND 323
H++ + +K+ + H+ D QK K I I+ ++GKR D
Sbjct: 293 HVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVC 382
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 412
Query: 383 RKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
R G RID L+ G + R + DGD+V+ NR P++H S++ VKV
Sbjct: 413 RDNG----ERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKV 468
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
LP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 469 LPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVM 527
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFS 549
+ QD+LTA + + V + QM + MF P + P I K +W+GKQ+FS
Sbjct: 528 GIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWNGKMPQPCILK--PKPLWTGKQIFS 585
Query: 550 MLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLF 589
+++P PD E P K + K++ G L G+L
Sbjct: 586 LIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLL 645
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ +V Y Q V+ WL + G ++ + D + EI +R
Sbjct: 646 HICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIR 699
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 700 KAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------ 744
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 745 --GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLSN 905
Query: 879 CAISE 883
A +
Sbjct: 906 KAFEK 910
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 213/882 (24%), Positives = 386/882 (43%), Gaps = 134/882 (15%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + +C +CG +D C GHFG I+ + H F++ I K+L SIC C
Sbjct: 54 LNDPRLGSIDRNYKCQTCG-EDMSECPGHFGHIELTRPVFHIGFIAKIKKVLESICFHCG 112
Query: 104 TIRKERQKGAGSSRKEQPRVCKYC-VRNPAQWYP------RMRFKLSSKDLSGKTAIIVE 156
+ + +E P + + +R+P + + + + + ++ GK
Sbjct: 113 KLLLD---------EENPLMAQAIKIRDPKKRFNAVWGLCKSKMICETSEIEGKRGGCGH 163
Query: 157 IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFIL 216
+ + KL WG + E+N +P R+ L+ ++ + K +
Sbjct: 164 TQPTIRRDGLKL----WGTWKSNKNFEDND-QPERRQLTPTEILQIFKHITSEDCYRLGF 218
Query: 217 SKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQD 276
++D + +T V + + F++ R + +L+ +++
Sbjct: 219 NEDYARPEWMLITVLPVPPPPVRPSIA------FNDTARGEDDLT------FKLADVIKA 266
Query: 277 CLKISKLHLDKSSRKDSAE--------VRQKKNIDISNSSGL-----RWIKDV------- 316
+ + +L +D S + +E V + DI+ R IK +
Sbjct: 267 NMNVQRLEMDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGK 326
Query: 317 -------VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ +
Sbjct: 327 EGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELV 386
Query: 370 SFRLLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPP 418
E G YV R G RID AL+ G + R L D D VL NR P
Sbjct: 387 RNGPSEHPGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWRVERHLMDEDPVLFNRQP 442
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+
Sbjct: 443 SLHKMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAV 501
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKIS 537
Q+++ QS + ++ + QD+L + + + + Q+ + + P+ + P I
Sbjct: 502 PLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAIIK 561
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWL-RDYE----------- 585
+WSGKQ+ S+ +P + G L+SA+ + L D E
Sbjct: 562 PKPLWSGKQMLSLAIPKGIHL-----QRFDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTV 616
Query: 586 ----GNLFQYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G L +++ V L+++ Q+V+ WL G ++ + D + + M
Sbjct: 617 GATGGGLIHTVMREKGPTVCAQLFSSIQKVVNFWLLHNGFSIGIGD------TIADAATM 670
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+I ++EA+ Q++++D+ N L + E +L+ S+E S L+QA
Sbjct: 671 KDITKTIQEAK--AKVQEIILDAQHNKL----EPEPGMTLRE---SFEHNVSRVLNQARD 721
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
A + +++L N++ M +GSKG+ + + Q S C+G Q R P
Sbjct: 722 TAGRSAEMSLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIP 770
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ + D + +K + VENS+L GL P E F H++ R+
Sbjct: 771 FGFADRSLPHFTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 825
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 826 AETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 866
>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
Length = 886
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 231/924 (25%), Positives = 385/924 (41%), Gaps = 151/924 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAV-----------SEVTNPRLGLPNPTNECSSCGAKD 65
++ I GI + E K+SV +I + V + RLG P C CG
Sbjct: 10 ISRIKFGILSPDEIRKMSVTQIFSSEVYDNDGSPIDGGVMDRRLGAIEPGETCPICG-NT 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR-KERQKGA----------- 113
R +C GHFG I+ ++H F I L + C C ++ E +KG
Sbjct: 69 RDSCPGHFGHIELAKPVIHVGFAKQILIYLKATCRNCGRLKIPEEEKGEYLRLLSDLQEL 128
Query: 114 GSS------------RKEQPRVCKYC--------VRNPAQWYP---RMRFKLSSKDLSGK 150
G+ + C +C + P +Y R KL+ ++ G+
Sbjct: 129 GAPYLIKRFHEYIRRKASTADTCPHCGAKQYKIKLEKPHTFYEQTERGLLKLTPSEVRGR 188
Query: 151 TAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI 210
EK+S + KL G P DA +P VL+ V + V PS+
Sbjct: 189 L-------EKISNDDVKL----LGGDPSDA-------RPEWMVLTVLPVPP--RSVRPSV 228
Query: 211 R-EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE 269
E I S+D K + N+R+ E + + D W + Y ++
Sbjct: 229 LLETGIRSEDDLTHKLVDIIRTNNRLREHVEGGA-PSAIIEDEWELLQYHITTYFDNEVP 287
Query: 270 LSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+ ++K K+ + + ++ K+ ++ + GKR D R V
Sbjct: 288 -------GVPVAKHRSGKTLKGIAQRLKGKEG----------RFRNNLRGKRVDFSARTV 330
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELYVCRKGGL 387
++ DP++ + E+G+P VA+ L I ER+ WN E + + EK G Y+ R G
Sbjct: 331 ISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLV-LNGPEKWPGANYIVRPDGR 389
Query: 388 -VRIRRID------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
+ ++ +D +LE G I+ R L DGDIVL NR PS+H S++A V+VLP +
Sbjct: 390 KISLKFVDRKAAAESLEPGFIVERHLMDGDIVLFNRQPSLHRISVMAHVVRVLPYKTF-R 448
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N L C P++ DFDGD ++ ++PQ+ AR E L+ +++ ++ + G ++ QD ++
Sbjct: 449 LNLLVCPPYNADFDGDEMNLHVPQSEEARAEARLLMLVERHILTPRYGGPIIGGLQDYIS 508
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A++L + LL + L ++ P+ + ++W+GKQL S+ LP DF Y
Sbjct: 509 GAYILTSKTTLLDKDDVVDLLSSTGYKGELPEPAILKPRALWTGKQLVSLFLPKDFNYKR 568
Query: 561 PSKD------------------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRY-RDK 599
SK V I G L+ + +S R+ +L +LIK Y D
Sbjct: 569 NSKIGSAAALRCIDEDCPHDSLVIIKNGVLLEGVLDKASIGREEPESLVHWLIKEYGEDY 628
Query: 600 VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQL 659
F+ ++ G+T+S + L L + +R + EI G ++ ++L
Sbjct: 629 GRMFMDRVYKMFIRMSEKYGLTMSYTHLTLPEEARNR---LSEIIAGKKK-----EVEEL 680
Query: 660 MVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGS 719
+ L++ +L+ E + LS+ +D+ V L
Sbjct: 681 ISKYRRGELLARPGKTVKETLEDEIIDI-------LSKKLLDSVAEVITPYFTLV----- 728
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
N ++ M + G++GN + L Q + LG Q R A + D
Sbjct: 729 --NPVVIMARTGARGNPVNLTQMAALLGQQTVRGK---RLTRGYLGRALPHFKPEDLGPE 783
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCT 837
A+ +I S F+ GLNP+E F H+ R+ G + RRL+ ++DL
Sbjct: 784 ARGFIASG-----FVHGLNPVEMFFHAAAGREGLIDTAVRTSQSGYMQRRLINALQDLRV 838
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGT 861
YDG+VR G +IVQ Y +G
Sbjct: 839 EYDGSVRLTTG-EIVQLLYGEDGV 861
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 231/956 (24%), Positives = 393/956 (41%), Gaps = 160/956 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIKYPETYEGGRPKIGGLMDPRQGVVDRMSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H FL+ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFFCSKLLVSPNNAKIKEIVTKSRGQPRK 134
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKL-------SSKDLSGKTAIIVEIDEKLSKKNKKLPD 170
V C +N + M +SKD G + + L
Sbjct: 135 RLTFVYDLCKGKNICEGGDEMDITKDNADNPDNSKDKKGGHGGCGRYQPNIRRTGLDLTA 194
Query: 171 DYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------ 224
+ W D Q++ + LS ++V +LK + + E IL D F +
Sbjct: 195 E-WKHTNEDNQEK-------KIALSAERVWEILKHI--TDEECLILGMDPKFARPDWMLV 244
Query: 225 -CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDC 277
PV P + R V + + + D+ T L ++ I +H++ +
Sbjct: 245 TVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIIKANNELIRNEQAGAAAHIISEN 300
Query: 278 LKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRW--------IKDVVLGKRNDDCFRMV 329
+K+ + H+ D + + L+ I+ ++GKR D R V
Sbjct: 301 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTV 360
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R G
Sbjct: 361 ITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPGAKYIIRDNG-- 418
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R + DGD+V+ NR P++H S++ VKVLP S+
Sbjct: 419 --ERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 476
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+I Q+ + ++ + QD+
Sbjct: 477 -RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQDT 535
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
LTA + + V L QM + MF P + P I K +W+GKQ+FS+++P
Sbjct: 536 LTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILK--PKPLWTGKQVFSLIIPGN 593
Query: 554 ----------PDFEYTFP-----SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRD 598
PD E P ++ Y G + G+S G+L +
Sbjct: 594 VNMIRTHSTHPDEEDDGPYNCCGARRTYY-GNFVQKTLGTS-----AGSLLHICMLELGH 647
Query: 599 KVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
+V Y Q V+ WL + G ++ + D + EI +++A++ +
Sbjct: 648 EVCGQFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAKE--DVI 699
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY 717
+++ +H N + + R ++E Q + L+ A A K
Sbjct: 700 EVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------GGSAKKS 744
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRL 771
++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 745 LTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK------- 797
Query: 772 RAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
Y P + VENS+L GL P E F H++ R+ G + RR
Sbjct: 798 ---------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRR 848
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
L+ M + YDGTVRN+ G Q++Q Y +G T E P LS A +
Sbjct: 849 LIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQTLPTIKLSNKAFEK 903
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 229/961 (23%), Positives = 398/961 (41%), Gaps = 162/961 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVTPTNPKIKEVVMKSKGQPRK 134
Query: 119 EQPRVCKYCV-RNPAQWYPRMRF------KLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD 171
V C +N + M + +K + + + L +
Sbjct: 135 RLAYVYDLCKGKNICEGGEDMDLGGGDGTEEGAKKGAAGHGGCGHYQPSIHRSGLDLTAE 194
Query: 172 YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-------LK 224
W + D+Q++ + V+S ++V +LK + + E FIL D F +
Sbjct: 195 -WKHVNEDSQEK-------KIVISAERVWEILKHI--TDEECFILGMDPKFARPDWMIIT 244
Query: 225 CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCL 278
PV P R V + + D+ T L ++ I +H++Q+ +
Sbjct: 245 VMPVPPLCVRPAVVMFGAAKNQ----DDLTHKLSDIIKTNNELIRNEQAGAAAHVIQENI 300
Query: 279 KISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
K+ + H + ++ +K ++ K + G I+ ++GKR D R
Sbjct: 301 KMLQFHVATFVDNDMPGMPRAVQKSGKPLKAVK-ARLKGKEGR--IRGNLMGKRVDFSAR 357
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 358 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQKLVRRGNSQYPGAKYIVRDNG 417
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 418 ----ERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 473
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 474 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 532
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V + QM + MF P + P I K +W+GKQ+FS+++P
Sbjct: 533 DTLTAVRKMTKRDVFIEKEQMMNILMFLPTWIGKMPKPCILK--PKPLWTGKQIFSLIIP 590
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L +
Sbjct: 591 GNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICM 650
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL + G ++ + D + EI +++A++
Sbjct: 651 LELGHDTAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAKE 704
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+ +++ +H N + + R ++E Q + L+ A
Sbjct: 705 --DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------GG 747
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCA 766
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 748 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK-- 805
Query: 767 AWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 806 --------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETG 851
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
+ RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P LS A
Sbjct: 852 YIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFE 910
Query: 883 E 883
+
Sbjct: 911 K 911
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 205 bits (522), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 227/949 (23%), Positives = 389/949 (40%), Gaps = 182/949 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 19 VQFGIISPDELKRMSVTEGGIRYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H F++ I K+L +C PK K I K G
Sbjct: 78 ECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDIL---VKSKGQ 134
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
RK V + C +N + M K + + I E ++ +
Sbjct: 135 PRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGL 194
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E+ IL D+ F +
Sbjct: 195 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEEDIILGMDSKFARPE 244
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HL 273
PV P R V + + D+ T L +V R E S H+
Sbjct: 245 WMIVTVLPVPPLAVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQSGAAAHV 300
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K+I ++ ++GKR D
Sbjct: 301 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS 360
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+++ ++G+P +A + E + +N +RL + + G Y+ R
Sbjct: 361 ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 420
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L++G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 421 NG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 476
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 477 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 535
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K ++W+GKQ+FS++
Sbjct: 536 VQDTLTAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKMPQPAILK--PRALWTGKQIFSLI 593
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K+I G L G+L
Sbjct: 594 IPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHI 653
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSD------LYLASHSCSRKILMDEIF 644
+ Y+ Q V+ WL + G ++ + D YL + +K D I
Sbjct: 654 SYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVI- 712
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVD 701
+++ +H N L + ++ + + L+ + ++ + +Q S+
Sbjct: 713 -------------EVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 759
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
+ N+ +M AGSKG+ + + Q +G Q+ P F+
Sbjct: 760 EY------------------NNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFK 801
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 802 HRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGL 845
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ NQ+VQ Y +G
Sbjct: 846 IDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSI-NQVVQLRYGEDG 893
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 226/961 (23%), Positives = 393/961 (40%), Gaps = 162/961 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H FL+ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPHNPKIKEVIMKTKGQPRK 134
Query: 119 EQPRVCKYC-VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPD------- 170
+ C +N + M + + VE + P+
Sbjct: 135 RLTHIYDLCKSKNICEGGDEMDINKENSE----NQPPVERKPGHGGCGRYQPNLRRSGLD 190
Query: 171 --DYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
W + D+Q++ + VL+ ++ +LK + E FIL D F +
Sbjct: 191 VTAEWKHVNEDSQEK-------KIVLTAERAWEILKHI--KDEESFILGMDPKFARPDWM 241
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQ 275
PV P + R + + + + D+ T L ++ + +H++
Sbjct: 242 IVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKSNNELLRNEQSGAAAHVIS 297
Query: 276 DCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H + R + K I I+ ++GKR D R
Sbjct: 298 ENIKMLQFHAATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 357
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +++ V + + G Y+ R G
Sbjct: 358 TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPGAKYIVRDNG 417
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R + DGD+V+ NR P++H S++ VKVLP S
Sbjct: 418 ----ERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 474 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQ 532
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V + QM L MF P + P I K +W+GKQLFS+++P
Sbjct: 533 DTLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILK--PKPMWTGKQLFSLIIP 590
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLI 593
PD E P K + K++ G L G+L +
Sbjct: 591 GNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICM 650
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+V Y Q V+ WL + G ++ + D + EI +++A++
Sbjct: 651 LELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAKE 704
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+ +++ +H N + + R ++E Q + L+ A
Sbjct: 705 --DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------GG 747
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCA 766
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 748 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK-- 805
Query: 767 AWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 806 --------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETG 851
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
+ RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P +S A
Sbjct: 852 YIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKVSNKAFE 910
Query: 883 E 883
+
Sbjct: 911 K 911
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 218/874 (24%), Positives = 376/874 (43%), Gaps = 110/874 (12%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P+LG + +C +CG + C GHFG ++ + H F+ I K+ IC C
Sbjct: 53 LNDPKLGSIDRNFKCQTCG-EGMAECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCG 111
Query: 104 TIRKERQKG--AGSSRKEQPR--------VCK---YCVRN-PAQWYPRMRFKLSSKDLSG 149
+ + A + R P+ +CK C + P Y K+ S+ G
Sbjct: 112 KLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCEADAPVDEYSEQ--KVVSRGGCG 169
Query: 150 KTAIIVEIDE-KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDP 208
T +V D KL KK GF DAQ P RK+L+ ++ + K + P
Sbjct: 170 NTQPVVRKDGMKLWGTWKK-----SGFSDRDAQ-------PERKLLTPGEILNVFKHISP 217
Query: 209 S--IREEFILSKDAP---FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDY 263
R F P + PV P R + + + + LK ++
Sbjct: 218 EDCFRLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINV 277
Query: 264 RGRDIELS--HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRW--------I 313
+ +++ S H++ + ++ + H+ D A Q +R +
Sbjct: 278 QKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRL 337
Query: 314 KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL 373
+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N RL+ +
Sbjct: 338 RGNLMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGP 397
Query: 374 LE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHP 422
E G YV R G RID L+ G + R L D D VL NR PS+H
Sbjct: 398 NEHPGAKYVIRDNG----DRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHK 453
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+
Sbjct: 454 MSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQI 512
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSV 541
++ QS + ++ + QD+L + + + Q+ + + P + P + +
Sbjct: 513 VSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKPL 572
Query: 542 WSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQ 590
W+GKQL S+ +P KD + + G + + G L
Sbjct: 573 WTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIH 632
Query: 591 YLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+++ K+ L+ Q+V+ WL G ++ + D +A S M EI + +
Sbjct: 633 TVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDA-IADAST-----MKEITHAISS 686
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
A++ Q+++ + N L K + R S+E + S L+ A A + +
Sbjct: 687 AKE--QVQEIIYKAQHNEL-ELKPGMTLRE------SFEGEVSRTLNDARDSAGRSAEMN 737
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAW 768
+++L N++ M AGSKG+ + + Q S C+G Q ++F F + +
Sbjct: 738 LKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGF----ADRSL 785
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 786 PHFTKDDFSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 840
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 841 RLVKALEDIMVHYDGTTRNSLGD-IIQFLYGEDG 873
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 226/953 (23%), Positives = 394/953 (41%), Gaps = 191/953 (20%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIQYPETMEGGRPKLGGLMDPRQGVVDRMSRCQTC-AGNMS 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I +LH F++ K+L +C C + P+V +
Sbjct: 75 ECPGHFGHIDLAKPVLHVGFITKTIKVLRCVCFYCSKLL---------VSPSHPKVKEIV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD---------------- 171
+++ Q PR R GK + ++K+N PDD
Sbjct: 126 MKSKGQ--PRKRLAFIYDLCKGKNICEGGDEIDIAKEN---PDDPSREQPKKQGHGGCGR 180
Query: 172 --------------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREE-FIL 216
W + D+Q++ + L+ ++V +LK + I EE IL
Sbjct: 181 YQPNIRRAGLDLTAEWKHVNEDSQEK-------KIPLTAERVWEILKHI---IDEECLIL 230
Query: 217 SKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE 269
D + + PV P + R V H + + D+ T L ++ I
Sbjct: 231 GMDPRYARPDWMIVTSLPVPPLSVRPAVVMHGSARNQ----DDLTHKLSDIIKCNNELIR 286
Query: 270 ------LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRW 312
+H++ + +K+ + H L ++ +K ++ K+ + G
Sbjct: 287 NEKAGASAHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKS-RLKGKEGR-- 343
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N++++ +
Sbjct: 344 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMKELVHRG 403
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 404 NSQYPGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 459
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q
Sbjct: 460 KMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQ 518
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V L QM + M P + P I K
Sbjct: 519 IITPQANKPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMHLPIWDGKMPQPCILK--P 576
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 577 RPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDNGPYKWISPGDTKVVVEHGELVMGILCK 636
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 637 KTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYV-- 694
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A+ + +++ +H N + + R ++E Q + L+
Sbjct: 695 ----EIQRAIKKAK--ADVIEVIQKAH-NMDLEPTPGNTLRQ------TFENQVNRILND 741
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 742 ARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 793
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E + H++
Sbjct: 794 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGG 837
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 838 REGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDG 889
>gi|321468524|gb|EFX79508.1| hypothetical protein DAPPUDRAFT_319346 [Daphnia pulex]
Length = 878
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 221/924 (23%), Positives = 388/924 (41%), Gaps = 146/924 (15%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G N + C +C +
Sbjct: 18 VQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRSARCETC-HRTIN 76
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG IK + H FL K+L +C P IR+ K G RK
Sbjct: 77 ECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIREILDKSEGHPRK 136
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV---EIDEKLSKKNKKLPDDYWGF 175
V C R + D+ + + ++ ++ + + W
Sbjct: 137 RMAHVYDIC----------KRINICENDIGEEITGHIGCGRYQPRIRRQGLGMIGE-WKH 185
Query: 176 IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI--REEFILSKDAPFLKCFPVTPNNH 233
+ D+Q+ + +R + + K++S D D +I + D L C PV P +
Sbjct: 186 VDEDSQETTIVLTADRVLENFKRIS----DEDCAILGMDPKYARPDWMILTCLPVPPPSV 241
Query: 234 RVTEVPHAFSHEKKLFFDNWTRHLK-----KMVDYRGRDIELSHLVQDCLK--ISKLHLD 286
R V FS + D +K ++ G + E+ + L+ I + ++
Sbjct: 242 RPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGENDEIIDQKINLLQSHIGTMMMN 301
Query: 287 KSSR-----KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
S R S ++ + + G I+ ++GKR D R ++T DPN+++ ++
Sbjct: 302 HSKRFPFSHHKSGQIIKSIKTRLEGREG--RIRGNLMGKRVDFSARTIITPDPNLRIDQV 359
Query: 342 GIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGEL-YVCRKGG----LVRIRRIDAL 396
G+P +A+ + E + N E++ L+++GE Y+ R+ L +++ L
Sbjct: 360 GVPRIIAQNMTFPEIVTPVNIEKMQ-----ELVQRGEAKYLIRENADRIDLKYVKKNPVL 414
Query: 397 ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
E+GD + R + DGD+V++NR PS+ ++ VKVLP S+ +NP C SP++ +FDGD
Sbjct: 415 EIGDKVERNIRDGDLVVVNRQPSLRKEDMMGHRVKVLPWPSI-RLNPSCASPYNANFDGD 473
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQ 516
++ + PQ++ R E+ ++ +Q+I Q+ + ++ + QD+L L + V L Q
Sbjct: 474 EMNMHFPQSLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTSKLTKRDVFLQKEQ 533
Query: 517 MQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFP 561
M L MF P + P I K +W+GKQLF++++P PD E P
Sbjct: 534 MMNLLMFLPTWDGKMPKPAILK--PRPLWTGKQLFTLIIPGNVNMMRTHSTHPDDEDEGP 591
Query: 562 SK-------DVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLC 612
K V I G+L+ L +L + +V Y Q V+
Sbjct: 592 YKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGNIQTVIN 651
Query: 613 EWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK 672
WL G ++ + D+ LA H Q N Q + ++ + + +
Sbjct: 652 NWLLYEGHSIGIGDM-LADH------------------QTYLNIQATIQNAKEDVIEVLQ 692
Query: 673 DSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ----NLAYKYGSKDNSLLAMF 728
S++ E L Q + + +D Q +LA ++ N+L AM
Sbjct: 693 RSQND--------ELEPTPGNTLRQTFENQVLRIIYDAQEQASDLAKNSLTEYNNLKAMA 744
Query: 729 KAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKS 782
AGS G+ + Q C+G Q+ P FR PH + DN ++
Sbjct: 745 VAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHFIK---------DDNGPESRG 795
Query: 783 YIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGT-LTRRLMFFMRDLCTAYDG 841
+ VENS+++GL P E + H++ R+ + T + R+L+ M + YDG
Sbjct: 796 F-----VENSYVSGLTPSEFYFHAMAGRELLIYETRIKSETGIIRQLVKGMESVMVHYDG 850
Query: 842 TVRNAYGN-QIVQFSYNIEGTSTP 864
TVRN+ G ++++ +N + + P
Sbjct: 851 TVRNSAGRLLLLRYKHNNKKSCVP 874
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 220/869 (25%), Positives = 380/869 (43%), Gaps = 102/869 (11%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
+ +PRLG + C +CG +D C GHFG I+ + H F++ I K+ +C C
Sbjct: 54 LNDPRLGSIDRNFRCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCG 112
Query: 103 KTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLS 162
K + E + K +R+P + + + ++L + +T II E + +
Sbjct: 113 KLLLDENNPAMAQAIK---------IRDPKKRFNAV-WQLCKAKMVCETDIIEEGATETT 162
Query: 163 KKN---------KKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDP--SIR 211
+ ++ WG + EEN +P R++L+ ++ +LK + +R
Sbjct: 163 TRGGCGHTQPTIRRDGLKLWGTWRHNKNFEENE-QPERRLLTPSEILNVLKHISSLDCLR 221
Query: 212 EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSH----EKKLFFDNWTRHLKKMVDYRGRD 267
F P V P AF+ E L F LK ++ + +
Sbjct: 222 LGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTF-KLADVLKANINVQRLE 280
Query: 268 IELS--HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVV 317
++ S H++ + + + H+ D A + QK K+I ++ +
Sbjct: 281 MDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNL 340
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-K 376
+GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 341 MGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEHP 400
Query: 377 GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G YV R G RID AL+ G + R L D D VL NR PS+H S++
Sbjct: 401 GAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMM 456
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q+++ Q
Sbjct: 457 AHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQ 515
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGK 545
S + ++ + QD+L + + + Q+ + + P+ + P +W+GK
Sbjct: 516 SNKPVMGIVQDTLCGIRKMTLRDNFIDYDQVMNMLYWIPNWDGVIPPPAIAKPKPLWTGK 575
Query: 546 QLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLIK 594
QL SM +P KD + + G + + G L +++
Sbjct: 576 QLLSMAIPKGIHLQRFDGGKDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMR 635
Query: 595 RYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
+V L+++ Q+V WL G ++ + D +A S M +I + EA+
Sbjct: 636 EKGPRVCAQLFSSIQKVTNYWLLHNGFSIGIGDT-IADVST-----MKDITSTISEAK-- 687
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
Q++++D+ N L + E +L+ S+E S L+QA A + ++++L
Sbjct: 688 IKVQEIILDAQSNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKDL 740
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRA 773
N++ M +GSKG+ + + Q S C+G Q R P S
Sbjct: 741 --------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSDRTLPHFTK 789
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFF 831
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 790 DDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 844
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 845 LEDIMVHYDGTTRNSLGD-IIQFVYGEDG 872
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 227/966 (23%), Positives = 396/966 (40%), Gaps = 169/966 (17%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNEC 58
+ P ++ + GI + E ++SV E G + + +PR G+ T+ C
Sbjct: 7 KAPLRLVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRC 66
Query: 59 SSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRK 118
+C A + C GHFG I + H F++ K+L +C C + Q
Sbjct: 67 QTC-AGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQ-------- 117
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY------ 172
P++ + +++ Q PR R GK I E E + + D
Sbjct: 118 -NPKIKEIVLKSKGQ--PRKRLAYVYDLCKGKK--ICEGGEDMDMSKEPTADGAKKQGHG 172
Query: 173 -----------WGFIPFDAQQEENSVKPNRKV-LSCKQVSYLLKDVDPSIREEFILSKDA 220
G ++ N +K+ +S ++V +LK + + E F+L D
Sbjct: 173 GCGHYQPSIRRTGLDLMAEWKDVNDENQEKKIQVSAERVYEILKHI--TDEECFVLGMDP 230
Query: 221 PF-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------D 267
F + PV P R V + + D+ T L ++
Sbjct: 231 KFARPDWMIITVLPVPPLAVRPAVVMFGATKNQ----DDLTHKLSDIIKANNELKKNEAT 286
Query: 268 IELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV 316
+H++ + +K+ + H + K+ +K ++ K + G I+
Sbjct: 287 GAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKAIK-ARLKGKEGR--IRGN 343
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+T DPN+++ ++G+P VA+ + E + +N +R+ + +
Sbjct: 344 LMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQY 403
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R L D D+V+ NR P++H S+
Sbjct: 404 PGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSM 459
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 460 MGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITP 518
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V + QM L MF P + P I K +W
Sbjct: 519 QANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPTWDGKMPQPAILK--PKPLW 576
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLR 582
+GKQ+F++++P PD E P K + K++ G L
Sbjct: 577 TGKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLG 636
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L + ++ Y Q V+ WL + G ++ + D + +
Sbjct: 637 TSAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYA------ 690
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
EI +++A++ + ++ +H N + + R ++E Q + L+ A
Sbjct: 691 EIQRAIKKAKE--DVIGVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDK 741
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 742 T--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 793
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 794 KRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGL 837
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E +
Sbjct: 838 IDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNL 896
Query: 872 PVGSLS 877
P LS
Sbjct: 897 PTIKLS 902
>gi|146302819|ref|YP_001190135.1| DNA-directed RNA polymerase subunit A' [Metallosphaera sedula DSM
5348]
gi|145701069|gb|ABP94211.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
5348]
Length = 886
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 230/924 (24%), Positives = 391/924 (42%), Gaps = 135/924 (14%)
Query: 8 EGLEVPSGILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTN 56
E +V I+ G+ GI + E K+SV I G E V + RLG+ P
Sbjct: 3 ERYQVNEKIIKGVRFGILSPDEIRKMSVTAIITADVYDEDGTPIEGSVMDSRLGIIEPGQ 62
Query: 57 ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR------KERQ 110
+C CG C GHFG I+ ++H F+ + LL S C +C ++ ++ +
Sbjct: 63 KCPICGNVI-GNCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCRRCGRVKISENDIEKYR 121
Query: 111 KGAGSSRKEQPRVCKYCVRN-----------PAQWYPRMRFKLSSK---DLSGKTAIIVE 156
K + +K P K + + P +++ KL K ++
Sbjct: 122 KIYDAIKKRWPSAAKRLIDHVKKTSMKAAVCPHCSEKQLKIKLEKPYNFYEERKEGVMRL 181
Query: 157 IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFI 215
+ ++ +++PD + +D + +P +L+ V + + PSI E I
Sbjct: 182 TPSDIRERLERIPDSDVELLGYDP----TTSRPEWIILTVLPVPPIT--IRPSIMIESGI 235
Query: 216 LSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQ 275
++D K + N R+ E A + + + D W + Y +I
Sbjct: 236 RAEDDLTHKLVDIVRINERLKESIDAGA-PQLIVEDLWDLLQYHVATYFDNEIP------ 288
Query: 276 DCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPN 335
L SK + R + ++ K+ N SG KR D R V++ DPN
Sbjct: 289 -GLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSARTVISPDPN 337
Query: 336 IKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID 394
I + E+G+P VA+ L + E++ WN ER+ I+ G YV R G RRID
Sbjct: 338 ISIDEVGVPYDVAQILTVPEKVTKWNIERMRQYVINGPDKWPGANYVVRPDG----RRID 393
Query: 395 ALELGD------------IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTIN 442
+ D I+ R L DGDIV+ NR PS+H S++ V+VLP +N
Sbjct: 394 LRYVKDRKELAATLAPNFIVERHLVDGDIVIFNRQPSLHRISMMGHKVRVLP-GRTFRLN 452
Query: 443 PLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAA 502
L C P++ DFDGD ++ ++PQ+ A E EL+ + + ++ + G ++ QD ++ A
Sbjct: 453 LLVCPPYNADFDGDEMNLHVPQSEEAIAETKELMTVHRNILTPRYGGPIIGSAQDYISGA 512
Query: 503 HLLMEDSVLLSHLQMQQLQMFC--PHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
+LL + LL+ ++Q + P I ++ +++GKQ+ S LP DF +
Sbjct: 513 YLLTVKTTLLTEDEVQTILGVANINKNLEEPAI--LAPKRLYTGKQIVSHFLPEDFNFHG 570
Query: 561 PS---------KD--------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRY-RDKV 600
P+ KD V I GKL+ + + ++ +L++ Y D V
Sbjct: 571 PANISSGVRSCKDEDCPHDSYVVIKKGKLLEGVFDKKALGNQQAESILHWLVREYDEDYV 630
Query: 601 LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLM 660
L + +V ++ + G+T++LSD+ + + + I +EA+
Sbjct: 631 LWLMDNLFKVFLRYIELHGLTMTLSDVTIPEEATKK------IAERAQEAR--------- 675
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
+N L+ + + + G L +L +DA + + +A Y
Sbjct: 676 --KKVNELIESYEKGQLEVIPGRTL------EESLESYILDALDKLRNEAGEIATTYLDP 727
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECA 780
N+ M + G++G++L + Q + LG Q R + + GD T A
Sbjct: 728 FNNAYIMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYATRTLPHFKPGDITPEA 784
Query: 781 KSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCT 837
+ +I S SF +GLNP+E F H+ R+ D A G + RRL+ + DL
Sbjct: 785 RGFIYS-----SFRSGLNPIETFFHAAGGRE-GLVDTAVRTSQSGYMQRRLINALSDLRV 838
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGT 861
YDGTVR YG +++Q Y +G
Sbjct: 839 EYDGTVRTLYG-EMIQTLYGGDGV 861
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 221/929 (23%), Positives = 380/929 (40%), Gaps = 157/929 (16%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PR G+ + + C +C A + C GHFG I + H F++ K+L +C C
Sbjct: 32 LMDPRQGVIDRQSRCQTC-AGNMTECPGHFGHIDLGKPVFHIGFITKTIKILRCVCFYCS 90
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
+ P++ + +++ Q PR R GK + + K
Sbjct: 91 KML---------VNPTNPKIKEIVMKSKGQ--PRKRLAHVYDLCKGKNICEGGDEMDIQK 139
Query: 164 KNKKLPDDYWGF-------------------IPFDAQQEENSVKPNRK----VLSCKQVS 200
N PDD G I D E V + + VL+ ++V
Sbjct: 140 DN---PDDPSGMQGKKQGHGGCGRYQPNIRRIALDLTAEWKHVNEDSQEKKIVLTAERVW 196
Query: 201 YLLKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNW 253
+ K + S E FIL D + + PV P R V + + + D+
Sbjct: 197 EIFKHI--SDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMYGSARNQ----DDL 250
Query: 254 TRHLKKMVDYRGRDIE------LSHLVQDCLKISKLHLDKSSRKDSAEV--------RQK 299
T L ++ + +H++ + +K+ + H+ D + R
Sbjct: 251 THKLADIIKANNELLRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGLPRAMQKSGRPL 310
Query: 300 KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNS 359
K + I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E +
Sbjct: 311 KALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTP 370
Query: 360 WNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTD 408
+N +++ + + G Y+ R G RID L+ G + R + +
Sbjct: 371 FNIDKMQDLVRRGNSQYPGAKYIIRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIRE 426
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
GD+++ NR P++H S++ VKVLP S+ +N SP++ DFDGD ++ ++PQ++
Sbjct: 427 GDLIIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMET 485
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP--- 525
R E+ + +Q+I Q+ + ++ + QD+LTA + + V L QM L M P
Sbjct: 486 RAEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMHLPIWD 545
Query: 526 HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLI 573
+ P I K +W+GKQ+FS+++P PD E P K + K++
Sbjct: 546 GKMPQPAILK--PKPMWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVM 603
Query: 574 SAEGS--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSL 624
G L G+L + +V Y Q V+ WL + G ++ +
Sbjct: 604 VEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQTVINNWLLLEGHSIGI 663
Query: 625 SDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684
D + EI +++A++ + +++ +H N + + R
Sbjct: 664 GDTIADPQTYL------EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ----- 709
Query: 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
++E Q + L+ A A K ++ N+L AM AGSKG+ + + Q
Sbjct: 710 -TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIA 760
Query: 745 CLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTG 796
C+G Q+ P FR PH + Y P + VENS+L G
Sbjct: 761 CVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAG 804
Query: 797 LNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
L P E F H++ R+ G + RRL+ M + YDGT+RN+ G Q++Q
Sbjct: 805 LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVG-QLIQL 863
Query: 855 SYNIEGTSTPTGEIGDQPVGSLSACAISE 883
Y +G + T E QP LS A +
Sbjct: 864 RYGEDGLAGETVEFQTQPTIKLSNKAFEK 892
>gi|170291135|ref|YP_001737951.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175215|gb|ACB08268.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 1324
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 244/1030 (23%), Positives = 438/1030 (42%), Gaps = 147/1030 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR + R V++ DP I + E+G+P ++A L + E +N N E++ + E
Sbjct: 331 LIGKRVNFSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEY 390
Query: 377 GELYVCRKGGLVRI--------------RRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
RKGG+ I + LE GDI+ R L DGD V+ NR PS+H
Sbjct: 391 PGANAIRKGGVTPISLKILQRKGKDALREAAEQLEPGDIVERHLMDGDYVIFNRQPSLHK 450
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ VKVLP + ++P C P++ DFDGD ++ ++PQ + VE+ EL+ + +
Sbjct: 451 LSMLGHRVKVLP-GATFRLHPAVCVPYNADFDGDEMNLHVPQILDGSVEVRELMGVKYNM 509
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVW 542
++ ++G +++ QD +TA +++ + L + ++ L K K +W
Sbjct: 510 LSPRTGGSIIGARQDFITALYMITKKDALFDKNEATRILSRAGITQLPEPAIKRPK-RLW 568
Query: 543 SGKQLFSMLLPPDFEYTFPSKD-VYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVL 601
+GKQL SMLLP D + +K V S K S G ++ EG L ++ D ++
Sbjct: 569 TGKQLISMLLPKDLNFEGIAKSAVKASECKDPSCLGDGYVLIREGKLLSGVLD---DNIV 625
Query: 602 DFLYAAQEVLCEWLSVR--GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQL 659
L + L + L +R G V++ L S+++L+ YG+ T + ++L
Sbjct: 626 GTLVKGRLTLIDVL-IRDYGEDVAIEFLNKLLKIASKEVLL----YGI-----TNSPKEL 675
Query: 660 MVDSH----MNFLMSAKDSESTRSLQGEHLS-----YEKQ-------RSAALSQASVDAF 703
M+ + + S E TR ++ ++ Y + R + + +
Sbjct: 676 MIPEEAKREIEEIYSNMKEEVTRLIRSRPITRKITIYRTKEELLRIMREEQMLEFDIVQT 735
Query: 704 KHVFW-DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
FW + ++ KY +++ M K G++G++ L Q +G Q + F
Sbjct: 736 MDSFWGKVSSVISKYIDPKSNVSIMAKTGARGSMANLAQIVGQVGQQKVKTRIGFVLTSG 795
Query: 763 LSCAAW-----NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
+ + + GD + A+ + V+NS+++GLNP E H+++SR+S
Sbjct: 796 RPRKGYKDRVLSYFQRGDLSPEARGF-----VKNSYVSGLNPAEFIFHAMSSRESLIDKG 850
Query: 818 --ADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVG- 874
+ G RR+ ++D+ +YD TVR++ G+ I+QF + +G PT ++PV
Sbjct: 851 RRTEDSGYFYRRVANSLKDVYVSYDETVRDSMGH-IIQFKFGGDGYD-PTKLFRNEPVNL 908
Query: 875 -SLSACAISEAAYSAL--DQPISLLETSPL-LNLKNVLECGSKKSNADQTMSLFLSNKLG 930
+ + E + D+ LL+ + L L+L + + K + L +
Sbjct: 909 ERIIRKYVKEERKRGVSKDKIEELLKEANLPLSLADAIHGARPKESE-------LKEIIA 961
Query: 931 KRRHGFEYGALEVKN----------------------HLECLMLSDIVS-----TSMIIY 963
+ + GFE +EV H L+ D+ ++ Y
Sbjct: 962 ELKEGFERAKVEVLTPIGLISAQSIAEPTTQMVLRTFHAPGLLAMDVTHGVERFKELVFY 1021
Query: 964 -SPQTGSMKHFSPWICHFHVR---------KEIMKRTGLKEHSIIDSLYR-QCKAARTEL 1012
S T +MK + C + KE+ R ++E++I + YR K + L
Sbjct: 1022 ASTSTPTMKIYLKQKCQEDISNLRKILRNLKELRVRDLIEEYAIDNFNYRLTIKPDKRAL 1081
Query: 1013 KISVPDML----ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSID--LETIQMWVMPF 1066
+ ++ M I + + E D +IV+ ++ D L+T++ W
Sbjct: 1082 ENNMIPMERFLNIIRATAKGMKGEVELED----DRIIVDLYEAAERDKPLQTLRSWSYRI 1137
Query: 1067 LLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCH 1126
L K V G R IK+ W D E +R S S + S
Sbjct: 1138 LDKP-VSGVRGIKRA---W-----VETVETDGRKEYIIRTSGSNLAAVLS---------- 1178
Query: 1127 QIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVAN--T 1184
M +D R+ ++ + GI+A L S + + G + ++ +VA+ T
Sbjct: 1179 --MSCVDIARTITNDCKEIERVLGIEAARNCIFNELASILEEQGLEVDRRYISLVADIMT 1236
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
S T E + L A G++ S + +P + F + A+ G V+ + G +DAL
Sbjct: 1237 YSGTIEAIRLQAAGVS-SGFFSEMKTPLSKMAFEWTTHVILNTARRGEVNKILGPLDALI 1295
Query: 1245 WGKVPSVGTG 1254
G+ P +GTG
Sbjct: 1296 MGQTPPIGTG 1305
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V +PRLG NP C CG K C GHFG I+ ++H ++ I +LN++C KC
Sbjct: 56 VLDPRLGTINPRQRCPVCGNLP-KNCPGHFGRIELAMPVIHIGYVKRIKDVLNTVCHKCG 114
Query: 104 TI 105
+
Sbjct: 115 KV 116
>gi|167044137|gb|ABZ08820.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1268
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 246/1021 (24%), Positives = 434/1021 (42%), Gaps = 167/1021 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ L E+G+P +A +L I E + WN E+L + I+ G
Sbjct: 318 GKRVDFSSRTVISPDPNLDLGEVGVPMSIATKLTIPEIVTEWNIEKLKKLVINGPNTFPG 377
Query: 378 ELYVCRKGGLVRIRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G V+IR D LE+G ++ R L+DGD+VL NR PS+H S++A
Sbjct: 378 VNYIVRPDG-VKIRLDFVEDTLQVADQLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAH 436
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+VLP ++P C P++ DFDGD ++ ++PQ+ AR E L+ + +QLI+ + G
Sbjct: 437 HVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLISPRFG 495
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQL 547
++ +D +T A+LL +D L+ + M + P+ +K+ +++GKQL
Sbjct: 496 GPIIGGLRDFITGAYLLTKDDTTLTKQEFSNFAMLGGYDEKLPEPKINNKNGLLYTGKQL 555
Query: 548 FSMLLPPDFEYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKR 595
FS+ LP DF + S KDV I G+L+S + SS + ++ + K
Sbjct: 556 FSLFLPSDFNFVMTSKWSKGIHGKQKDVVIKNGELVSGVIDKSSIGAEEPESVLHRIAKD 615
Query: 596 Y-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
Y +K FL + ++ ++++ G + SDL L S + IL D L+E D
Sbjct: 616 YGNEKAKKFLNSILIIIKQFITNYGFSYGYSDLEL-SEKDRQAILTD-----LQETYDKV 669
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + L + + + + + ++YE R A +A V A ++
Sbjct: 670 --ADIIVQKNKGTLKGLRGMTVSETAEAK-ITYELAR--ARDRAGVTANSNL-------- 716
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR---- 770
DN+ M G++G+ L + Q + LG Q R L NR
Sbjct: 717 ----EDDNAGKIMATTGARGSALNVGQMAGVLGQQS-------RRGKRLHTGYGNRTLPH 765
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRR 827
+ D+ + ++ S +F GL+ LE F H++ R+ D A G + RR
Sbjct: 766 FKEHDDNPDSHGFVKS-----NFRDGLSVLEFFFHAMGGRE-GLVDTAVRTQQSGYMQRR 819
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ-------------PVG 874
L+ + YDGTVR+ +G+ I+QF Y +G + G+ G
Sbjct: 820 LINAFEHIRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGEAFNINRLIESESIIDSG 878
Query: 875 SLSA----CAISEAAYSALDQPISLLETSPLLN-------LKNVLECG-----SKKSNAD 918
S + +IS+ A + ++ + L N L+NV + G K
Sbjct: 879 SKATKDEITSISKKYTKAFNPKLTSMVNDGLHNSKLSKEGLENVCKKGLELYDKSKVEPG 938
Query: 919 QTMSLFLSNKLGK-----RRHGFEYGALEVKNHLECLMLSDIV----------STSMIIY 963
Q + + + +G+ F + KN L L I+ + SM IY
Sbjct: 939 QAVGIVTAQSIGEPGTQMTLRTFHTAGIAEKN--VTLGLPRIIELVDARKKPSTPSMDIY 996
Query: 964 SPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAA-RTELKISVPDMLIS 1022
+ +EI++ T + D L + +T++ +SV + +
Sbjct: 997 LDKDSKSSKEEKKEKAIQTAREILQTT------VADLLVHPAETDYQTKITLSVDNNRLK 1050
Query: 1023 NKDCS--SINMQKECNDAF-------CVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVK 1073
+ C+ I E N F +T+ +V T D T+ + + +LKT V+
Sbjct: 1051 IRGCTLDDITSAFEANKKFNLKLDNNTITLQLV-----TESDAPTV-IALRNKVLKTTVR 1104
Query: 1074 GFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMID 1133
G +I+++ + ++ G+ ++ + S + S+ +D
Sbjct: 1105 GVPDIERITLKEEN------------GDWLIQTTGSNLAKVISVKG------------VD 1140
Query: 1134 WTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVG 1193
+N+ GI+A + L++ + + G + +L++VA+ + G
Sbjct: 1141 RNNVRTNNVFEISTVLGIEAARTSLINELKATLENQGLEVDVRYLMLVADLMCHKGYLQQ 1200
Query: 1194 LNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGT 1253
+ G+A S S +A F + AAK G V+ L+G + + G + +G+
Sbjct: 1201 IGRHGIA-----GSKDSVLARAAFEITVPTIANAAKLGEVEKLKGITENVIVGSLIPIGS 1255
Query: 1254 G 1254
G
Sbjct: 1256 G 1256
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ GI + + E K SV EI A + + RLG P +C +CG
Sbjct: 9 IAGIKFCVWSPNEIRKYSVSEITAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTCGNTS 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG ++ +LH F+ +I KLLN+ C C ++
Sbjct: 69 AR-CPGHFGHVELAEPVLHIAFIDNIHKLLNATCRSCSRLK 108
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 217/891 (24%), Positives = 377/891 (42%), Gaps = 141/891 (15%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
+ +PRLG + +C +C ++D C GHFG I+ + H F++ I K+ IC C
Sbjct: 54 LNDPRLGSIDRNFKCQTC-SEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCG 112
Query: 103 KTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEK-- 160
K + E + K +R+P + + + SK + + E D
Sbjct: 113 KLLLDETNPAMAQAIK---------IRDPKKRFNAVWSLCKSKMICEADVLSNENDPNSA 163
Query: 161 ---------------LSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
+ + KL WG + EEN +P R++L+ ++ + K
Sbjct: 164 PVTQGRGGCGHTQPTIRRDGLKL----WGTWKQNKNFEENE-QPERRLLTPSEILSVFKH 218
Query: 206 VDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG 265
+ P ++D + +T V VP F D RG
Sbjct: 219 ISPEDCFRLGFNEDYARPEWMLIT-----VLAVPPPPVRPSIAFNDT----------ARG 263
Query: 266 RD---IELSHLVQDCLKISKLHLDKSSRKDSAE--------VRQKKNIDISNSSGL---- 310
D +L+ +++ + + +L +D S + +E V + DI+
Sbjct: 264 EDDLTFKLADILKANINVQRLEMDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKT 323
Query: 311 -RWIKDV--------------VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISE 355
R IK + ++GKR D R V++GDPN+ L ++G+P +A+ L E
Sbjct: 324 GRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPE 383
Query: 356 RLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYR 404
+ +N RL+ + E G YV R G RID AL+ G + R
Sbjct: 384 IVTPYNIHRLTEYVRNGPNEHPGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVER 439
Query: 405 PLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQ 464
L D D VL NR PS+H S+++ VKV+P S+ +N SP++ DFDGD ++ ++PQ
Sbjct: 440 HLMDNDPVLFNRQPSLHKMSMMSHKVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQ 498
Query: 465 AIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC 524
+ R EL+E+ A+ Q+++ QS + ++ + QD+L + + + Q+ + +
Sbjct: 499 SPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMLYWI 558
Query: 525 P-HRFLSPDIFKISKDSVWSGKQLFSMLLPP--------DFEYTFPSKD---VYISGGKL 572
P + P + +W+GKQL SM +P D + KD + + G +
Sbjct: 559 PVWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRFDDGKNLLSPKDSGMLIVDGEIM 618
Query: 573 ISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLAS 631
+ G L +++ +V L+ + Q+V+ WL G ++ + D +
Sbjct: 619 FGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSLQKVVNYWLLHNGFSIGIGDTIADA 678
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQR 691
+ M + + +A+ Q+++ D+ N L D E +L+ S+E
Sbjct: 679 ST------MKNVTTTIEDAKKKV--QEIINDAQQNKL----DPEPGMTLRE---SFEHNV 723
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
S L+QA A + ++++L N++ M +GSKG+ + + Q S C+G Q
Sbjct: 724 SRVLNQARDTAGRSAEMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQIV 775
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
R P + D + +K + VENS+L GL P E F H++ R+
Sbjct: 776 EGK---RIPFGFADRTLPHFTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGRE 827
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 828 GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 877
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 233/918 (25%), Positives = 387/918 (42%), Gaps = 155/918 (16%)
Query: 41 VSEVTNPRLGLPNPTNECSSC-------GAKDRKACEGHFGFIKFPFTILHPYFLSDIAK 93
+ + +PR+G + C +C G K C GHFG I+ + H F+ ++ K
Sbjct: 62 IGGIGDPRMGTCDFRARCKTCDCTYSGSGGKVND-CPGHFGHIELARPMYHMGFIKEVLK 120
Query: 94 LLNSICPKCKTI----RKERQKGAGSSRKEQPR------------VCKYCVRNPAQWYPR 137
+L S+C C + R R + A + + R +C+Y + +
Sbjct: 121 ILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYGEEADME---K 177
Query: 138 MRFKLS----------SKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSV 187
MR L+ SK G + K K+ KL + F Q E+
Sbjct: 178 MREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKL------LVEFPEQMEDVPG 231
Query: 188 KPNRKV-LSCKQVSYLLKDVDPSIREEFILSKDAPF-------LKCFPVTPNNHRVTEVP 239
+RK L +V + K++ S + F L D + + PV P + R +
Sbjct: 232 SGDRKQNLPAAKVLSIFKNI--SDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAI 289
Query: 240 HAFSHEKKLFFDNWTRHLKKMVDYR------GRDIELSHLVQDCLKISKLHLDKSSRKDS 293
+ + D+ T +L +V R E SH+++ ++ + HL +
Sbjct: 290 DGMARGE----DDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQ 345
Query: 294 AEVRQKKNIDISNSSGLRW--------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPC 345
+ Q + LR I+ ++GKR D R V+T DPNI + ++G+P
Sbjct: 346 PGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNIAIDQVGVPR 405
Query: 346 QVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK-GGLVRIRRID-----ALEL 398
+A L + ER+ +N + I+ LE G Y+ R+ G + +R I AL+
Sbjct: 406 SIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKC 465
Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCL 458
G I+ R L D D+VL NR PS+H S+++ VKV S+ +N SP++ DFDGD +
Sbjct: 466 GWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTF-RLNLSVTSPYNADFDGDEM 524
Query: 459 HGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQ 518
+ ++PQ++ AR + EL+ + K +I QS R ++ + QDSL A + + L+ +
Sbjct: 525 NLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLTKDWVM 584
Query: 519 QLQMFCPH---RFLSPDIFKISK------DSVWSGKQLFSMLLP----PDFEYTFPSKD- 564
L M+ + + +P I K +W+GKQLFS ++P F T SK+
Sbjct: 585 NLLMWVSNWDGKVPTPAILVPKKGELGKYTPIWTGKQLFSTIVPGINFTGFSSTHNSKEK 644
Query: 565 ----------VYISGGKLISA------EGSSWLRDYEGNLFQY-LIKRYRDKVLDFLYAA 607
V I G+L++ GSS G L ++++ D+ L A
Sbjct: 645 FSDLSPIDSRVIIQQGELLAGIIDKKIIGSS-----AGGLIHITMLEKGPDETKRLLGAI 699
Query: 608 QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
Q+++ WL R TV +SD + + K ++D I Q L+V
Sbjct: 700 QQLVNNWLVGRSFTVGVSDTI--ADVSTLKTIVDII------TQAKVQVHDLVVRGQKGK 751
Query: 668 LMSAKDSESTRSLQGE---HLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
L + S +G L+ + ++ +Q S+D + N++
Sbjct: 752 LETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLD------------------ETNNI 793
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI 784
A +GSKG+ + + Q C+G Q+ R P+ + D ++ +
Sbjct: 794 KATVTSGSKGSFINISQIIACVGQQNVEG---KRIPYGFNHRTLPHYGKDDLGPESRGF- 849
Query: 785 PSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGT 842
VENS+L GL P E F H++ R+ G + RRL+ M + T YDGT
Sbjct: 850 ----VENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGT 905
Query: 843 VRNAYGNQIVQFSYNIEG 860
VRNA G +I+QF Y +G
Sbjct: 906 VRNAQG-EIIQFLYGEDG 922
>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
Length = 809
Score = 203 bits (517), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 162/576 (28%), Positives = 267/576 (46%), Gaps = 73/576 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+T DPN+ L ++G+P +A+ L E + +N E L ++ E
Sbjct: 74 LMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYLQKLVNNGPTEH 133
Query: 377 -GELYVCRKGGL---VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
G YV R G +R + L+ G ++ R + DGD+VL NR PS+H S++ +KV
Sbjct: 134 PGARYVVRDDGNRIDLRFKTDVVLQPGYLVERHINDGDVVLFNRQPSLHKMSMMGHRIKV 193
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
+P S+ +N +P++ DFDGD ++ +IPQ++ A+ EL EL + Q+++ QS + +
Sbjct: 194 MPYSTF-RLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVELALVPTQIVSPQSNKPCM 252
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFS 549
+ QD+L L+ + + M+ P + P I K +WSGKQ+FS
Sbjct: 253 GIVQDTLCGVRKFTRRESFLNKAMVMNIVMWLPSWEGKLPRPCILK--PVPLWSGKQIFS 310
Query: 550 MLLP------------PDFEYTFPS---KDVYISGGKLISA-EGSSWLRDYEGNLFQYLI 593
M++P PD EY+ S V I G+LIS + G L +
Sbjct: 311 MIIPKGVNCVTFHSTHPDNEYSDISPGDTKVLIEDGELISGIVCKKTVGPAAGGLIHVIY 370
Query: 594 KRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V F Q V+ WL + G ++ + D + K + + I E +
Sbjct: 371 NEHGSEVAKQFFNGVQTVVNNWLLINGFSIGIGDTIADRQTM--KNINETIAIAKEEVKA 428
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
T Q L+S + + R ++E + + +L++A A K ++
Sbjct: 429 TIQQAQ-------KGLLSCEPGMTLRE------TFESKVNKSLNKARDSAGKSAQTSLK- 474
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSCA 766
+ N++ M AGSKG+ + + Q + C+G Q+ P FR+ PH
Sbjct: 475 -------EQNNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGFRYRTLPH----- 522
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
GD ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 523 ----FTKGDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYI 573
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+L+ + D+ YDGTVRNA G +I+QF Y +G
Sbjct: 574 QRKLVKALEDVMIKYDGTVRNALG-EIIQFKYGEDG 608
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 225/957 (23%), Positives = 393/957 (41%), Gaps = 155/957 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVGPHNPKIKEIVMKTKGQPRK 134
Query: 119 EQPRVCKYC-VRNPAQWYPRMRFKLSSKDLSGKT-----AIIVEIDEKLSKKNKKLPDDY 172
V C +N + M ++D L + + +
Sbjct: 135 RLTFVYDLCKSKNICEGGDEMDINKENQDQQNTDRKPGHGGCGRYQPNLQRSGLDVTAE- 193
Query: 173 WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------C 225
W + D+Q++ + L+ ++ +LK + + E FIL D F +
Sbjct: 194 WKHVNEDSQEK-------KIALTAERAWEILKHI--TDEESFILGMDPKFARPDWMVVTV 244
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCLK 279
PV P + R + + + + D+ T L ++ I +H++ + +K
Sbjct: 245 LPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKANNELIRNEQAGAAAHVISENIK 300
Query: 280 ISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
+ + H+ D QK K I I+ ++GKR D R V+T
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R G
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNG---- 416
Query: 391 RRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
RID L+ G + R + DGD+V+ NR P++H S++ VKVLP S+
Sbjct: 417 ERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-R 475
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LT
Sbjct: 476 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLT 535
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP---- 553
A + + V + QM + MF P + P I K +W+GKQ+FS+++P
Sbjct: 536 AVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILK--PKPLWTGKQIFSLIIPGNVN 593
Query: 554 --------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYR 597
PD E P K + K++ G L G+L +
Sbjct: 594 MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELG 653
Query: 598 DKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
+V Y Q V+ WL + G ++ + D + EI +++A++ +
Sbjct: 654 HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAKE--DV 705
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
+++ +H N + + R ++E Q + L+ A A K
Sbjct: 706 IEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------GGSAKK 750
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNR 770
++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 751 SLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK------ 804
Query: 771 LRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
Y P + VENS+L GL P E + H++ R+ G + R
Sbjct: 805 ----------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQR 854
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
RL+ M + YDGTVRN+ G Q++Q Y +G T E + P LS A +
Sbjct: 855 RLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEK 910
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 203 bits (516), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 229/941 (24%), Positives = 390/941 (41%), Gaps = 168/941 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRMSRCQTC-AGNMS 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPSHPKIKEIVLKSKGQPRK 134
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKT------AIIVEIDEKLSKKNKKLPDD 171
V C +N + M + D G + L + ++ +
Sbjct: 135 RLTFVYDLCKGKNICEGGDEMDIQKDGMDDGGASNRKPGHGGCGRYQPNLRRTGLEVTAE 194
Query: 172 YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK------- 224
W + D Q+++ S LS ++V +LK + + E FIL D F +
Sbjct: 195 -WKHVNEDGQEKKIS-------LSAERVWEILKHI--TDEECFILGMDPKFARPDWMIVT 244
Query: 225 CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV---------DYRGRDIELSHLVQ 275
PV P R V + + + D+ T L ++ ++ G +H++
Sbjct: 245 VLPVPPLCVRPAVVMYGSARNQ----DDLTHKLADIIKCNNELTRNEHSG---AATHVIA 297
Query: 276 DCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDD 324
+ +K+ + H L ++ +K ++ K + G I+ ++GKR D
Sbjct: 298 ENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGNLMGKRVDF 354
Query: 325 CFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER-LSVCISFRLLEKGELYVCR 383
R V+T DPN+++ ++G+P +A + E + +N ++ L + G Y+ R
Sbjct: 355 SARTVITPDPNLRIDQVGVPRTIALNMTFPEIVTPFNIDKMLELVRRGNAQYPGAKYIVR 414
Query: 384 KGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
G RID L+ G + R + DGD+V+ NR P++H S++ VKVL
Sbjct: 415 DNG----ERIDLRFHPKPSDLHLQWGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVL 470
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+I QS + ++
Sbjct: 471 PWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQSNKPVMG 529
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSM 550
+ QD+LTA + + V L QM + M P R P I K +W+GKQ+FS+
Sbjct: 530 IVQDTLTAVRKMTKRDVFLEKEQMMNILMHLPGWNGRMPIPAILK--PKPLWTGKQVFSL 587
Query: 551 LLP------------PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGNLFQ 590
++P PD E P K V + G+L+ S L G+L
Sbjct: 588 IIPGEVNMIRTHSTHPDDEDNGPYKWISPGDTKVMVEAGRLVMGILCKSSLGTSAGSLLH 647
Query: 591 YLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+ + Y Q V+ WL + G ++ + D + EI +++
Sbjct: 648 ICFLELGHEQCGYFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKK 701
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
A+ + +++ +H N + + R ++E Q + L+ A
Sbjct: 702 AKQ--DVIEVIQKAH-NMDLEPTPGNTLRQ------TFENQVNRILNDARDKT------- 745
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHEL 763
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 746 -GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 804
Query: 764 SCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
Y P + VENS+L GL P E F H++ R+
Sbjct: 805 K----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 848
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 849 ETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDG 888
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 203 bits (516), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 230/965 (23%), Positives = 394/965 (40%), Gaps = 184/965 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ T+ C +C A +
Sbjct: 15 VQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTC-AGNMT 73
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 74 ECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVS---------PSNPKIKEIV 124
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD---------------- 171
+++ Q PR R GK I E E + P D
Sbjct: 125 IKSKGQ--PRKRLAYVYDLCKGKK--ICEGGEDMDITKDGAPPDPNKKQGHGGCGHYQPS 180
Query: 172 ----------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP 221
W + D+Q+++ +V + ++V +LK + + E ++L D
Sbjct: 181 LRRTGLDVIAEWKTVNEDSQEKKIAV-------TAERVWEILKHI--TDEECYVLGMDPK 231
Query: 222 F-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DI 268
F + PV P R V F K D+ T L +V
Sbjct: 232 FARPDWMIITVLPVPPLAVRPAVV--MFGATKNQ--DDLTHKLSDIVKSNNELKKNEATG 287
Query: 269 ELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVV 317
+H++ + +K+ + H + K+ +K ++ K+ + G I+ +
Sbjct: 288 AAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKSVKS-RLKGKEGR--IRGNL 344
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-K 376
+GKR D R V+T DPN+++ ++G+P VA+ + E + +N +R+ + +
Sbjct: 345 MGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYP 404
Query: 377 GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G Y+ R G RID L+ G + R L D D+V+ NR P++H S++
Sbjct: 405 GAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMM 460
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q
Sbjct: 461 GHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQ 519
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWS 543
+ + ++ + QD+LTA + + V L QM L MF P + P I K +W+
Sbjct: 520 ANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPCILK--PKPLWT 577
Query: 544 GKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRD 583
GKQ+F++++P PD E P K + K++ G L
Sbjct: 578 GKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 637
Query: 584 YEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + ++ Y Q V+ WL + G ++ + D + + E
Sbjct: 638 SAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGD------TIADPATYTE 691
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I +R+A++ + ++ +H N + + R ++E Q + L+ A
Sbjct: 692 IQRAIRKAKE--DVIGVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT 742
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 743 --------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 794
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 795 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLI 838
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P
Sbjct: 839 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLP 897
Query: 873 VGSLS 877
LS
Sbjct: 898 TIKLS 902
>gi|156937038|ref|YP_001434834.1| DNA-directed RNA polymerase subunit A' [Ignicoccus hospitalis
KIN4/I]
gi|156566022|gb|ABU81427.1| DNA-directed RNA polymerase, subunit A' [Ignicoccus hospitalis
KIN4/I]
Length = 889
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 167/579 (28%), Positives = 265/579 (45%), Gaps = 74/579 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPNI + E+G+P +VA+ L + ++ WN E + + I+ G
Sbjct: 324 GKRVDFSARTVISPDPNISINEVGVPIEVAKTLTVPVKVTPWNIEEMRKLVINGPDKWPG 383
Query: 378 ELYVCRKGGLVRIRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
YV K G RRID +L+ G + R L DGD+VL NR PS+H S+
Sbjct: 384 ANYVIMKDG----RRIDLRYAKDRKIIAESLQPGWTVERHLQDGDVVLFNRQPSLHRMSI 439
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+VLP + PL C P++ DFDGD ++ ++PQ+ AR E EL+ ++K +++
Sbjct: 440 MAHLVRVLP-GKTFRLCPLVCPPYNADFDGDEMNLHVPQSEEARAEALELMLVEKHILSP 498
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGK 545
+ G ++ QD ++ A+LL + LL +Q+L + P+ +S +VW+GK
Sbjct: 499 RYGGPIIGGLQDYISGAYLLTTVATLLDRSDVQELLGVTGYEGELPEPAILSPKTVWTGK 558
Query: 546 QLFSMLLPPDF-----------------EYTFPSKDVYISGGKLISA--EGSSWLRDYEG 586
QLFS+ LP DF EY F V + G+L+ + S +
Sbjct: 559 QLFSVFLPKDFNYSGKANISTGELKCDDEYCFYDSFVVVRDGELVEGVLDKKSIGHEQPK 618
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+L +++ Y +K + A ++ ++ RG T D+ L + EI
Sbjct: 619 SLMHWIVYEYGPEKGREIYDRAFKMFLRFIEKRGFTTRYDDVRLPPEAKK------EIEE 672
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
L+EA + + +++ N L+ L G L L +D
Sbjct: 673 VLKEAYEEV---EKLIEDFKNGLLE--------PLPGRTL------EETLELMIMDVLAK 715
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
+A KY S N+ + M KAG++GN+L L Q + LG Q R
Sbjct: 716 ARDKAGEIAAKYLSPLNNAVIMAKAGARGNILNLTQMAALLGQQSVRGE---RIKRGYRK 772
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPG 822
GD + A+ + V++SF GL P E F H+ R+ D A G
Sbjct: 773 RTLPHFEWGDISPDARGF-----VKHSFYEGLTPTEVFFHAAGGRE-GLVDTAVRTSQSG 826
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
+ RRL+ ++DL YDGTV++A+G + Q Y +G
Sbjct: 827 YMQRRLINALQDLKVDYDGTVKDAWG-ALYQSVYGDDGV 864
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVM---------EIGAVSE--VTNPRLGLPNPTNECSSCGAK 64
I+ I GI + E K++V+ E G E + +PR+G+ +P C +CG
Sbjct: 14 IIKEIKFGILSPDEIRKMAVVAVVTDQAYDEAGMPVEGGIMDPRMGVTSPGQRCPTCG-N 72
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
C GHFG+I+ ++H F+ I L + C C ++
Sbjct: 73 TLHDCPGHFGYIELVKPVIHYEFVPHIYDALRATCRVCGRVK 114
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 202 bits (515), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 232/942 (24%), Positives = 386/942 (40%), Gaps = 181/942 (19%)
Query: 20 ISLGISTDTEKEKLSVMEI----------GAVSEVTNPRLGLPNPTNECSSC--GAKDRK 67
+ GI + E + +SV EI + +PR G+ + C++C G D
Sbjct: 47 VQFGILSPDEIKDMSVCEIEFSQTYEDGVPKRGGLMDPRQGVVDRRGRCTTCCGGQAD-- 104
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHF I + H +S K+L +C C + K RV +
Sbjct: 105 -CPGHFAHITLAKPVFHVGLVSKTLKVLRCVCFYCSRVLVS---------KNNERVRRIL 154
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAII-----VEIDEKLSKKN-KKLPDDY--------- 172
+ PR RF+L KTA V+I E+ +K + Y
Sbjct: 155 SKTTGN--PRRRFELIYALCKTKTACDDADEEVDIIEEYAKSACGRYQPSYRRTGIEITA 212
Query: 173 -WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-------LK 224
W D QQE ++ VLS ++V + K + + + +L D F ++
Sbjct: 213 EWKRRANDEQQE------HKLVLSAERVLEIFKRI--ADEDCIVLGMDPRFARPDWMIIQ 264
Query: 225 CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG------RDIELSHLVQDCL 278
PV P R P + D+ T L +V+ R+ +H++ D L
Sbjct: 265 ELPVPPLAVR----PAVATFGSARNQDDLTHKLSDIVNANNQLKRNERNGAAAHVIADDL 320
Query: 279 KISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
K+ + H L +++K ++ K + G I+ ++GKR D R
Sbjct: 321 KLLQYHVATFIDNSVPGLPTATQKGGRPLKSLKQ-RLKGKEGR--IRGNLMGKRVDFSAR 377
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+ + +G+P +A+ + E + +N + L ++ + G YV R G
Sbjct: 378 TVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDELQELVNRGDAQYPGAKYVIRSNG 437
Query: 387 LVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
R+D ++ G + R + DGDI++ NR P++H S++ VK+LP S
Sbjct: 438 ----ERVDLRYHPRASDLVIQPGYKVERHMRDGDIIVFNRQPTLHKMSMMGHKVKILPWS 493
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N +P++ DFDGD ++ ++PQ++ + E+ E+ + +QLI Q+ + ++ + Q
Sbjct: 494 TF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIAEIAMVPRQLITPQANKPVMGIVQ 552
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA ++L + + ++ L M P + P I K + +W+GKQLFS+++P
Sbjct: 553 DALTAVYMLTKRDTFIEAARLMDLLMHMPDWNAKIPQPAILKPKR--LWTGKQLFSLIIP 610
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEG--------SSWLRDYEGNLFQYL- 592
PD E K + K++ G S + G+L +
Sbjct: 611 GEVNVELNHSTHPDDENAGEYKWISPGDTKVLVERGVLLSGIICSRTVGRSAGSLLHVVT 670
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSD------LYLASHSCSRKILMDEIFYG 646
++ D F Q WL G T+ ++D Y +K MD +
Sbjct: 671 LELGFDVAAQFYSQIQTTANAWLLAEGQTIGIADAIADRATYSHIQETIKKAKMDVVEVI 730
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
R +D+ + N L+ +S+ L + R+ + +Q S+ A
Sbjct: 731 ERARKDSIKV------TRGNTLLQTFESKINNILNN-----ARDRTGSSAQRSLSA---- 775
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FP 760
DN+ AM AGSKG+ + + Q C+G Q+ P FR P
Sbjct: 776 --------------DNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLP 821
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H + D AK + VENS+L GL P E F H++ R+
Sbjct: 822 HFIR---------DDCGPEAKGF-----VENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 867
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRLM M + YDGTVRNA G ++VQ SY +G
Sbjct: 868 AETGYIQRRLMKAMESIMVNYDGTVRNALG-EVVQLSYGEDG 908
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 229/961 (23%), Positives = 396/961 (41%), Gaps = 162/961 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 16 VQFGILSPDEVRRMSVTEGGIKYSETYEGGRPKLGGLMDPRQGVMDRSTRCQTC-AGNQV 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H +L K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHIGYLVKAIKILRCVCFYCSKLLVSPTNPKIKEVVMKTKGQPRK 134
Query: 119 EQPRVCKYCV-RNPAQWYPRMRF-KLSSKDLSGKTAIIV-----EIDEKLSKKNKKLPDD 171
V C +N + M K D +G+ + + + L +
Sbjct: 135 RLVYVYDLCKGKNICEGGDEMDIPKEGQDDPNGQGKKVGHGGCGRYQPNIRRSGLDLTAE 194
Query: 172 YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-------LK 224
W + D+Q++ + VL+ ++V + K + + E FIL D F L
Sbjct: 195 -WKHVNEDSQEK-------KIVLTAQRVWEIFKHI--TDEECFILGMDPKFARPDWMILT 244
Query: 225 CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCL 278
PV P R V + + + D+ T L ++ + +H++ + +
Sbjct: 245 VLPVPPLAVRPAVVMYGSARNQ----DDLTHKLADIIKANNELVHNEQAGAAAHVLAENI 300
Query: 279 KISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
K+ + H L ++ +K ++ K + G I+ ++GKR D R
Sbjct: 301 KLLQFHVATLIDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGNLMGKRVDFSAR 357
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ + E + +N E++ + + G Y+ R G
Sbjct: 358 TVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLEKMQELVQRGNSQYPGAKYIVRDNG 417
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R + DGD+V+ NR P++H S++ VKVLP S
Sbjct: 418 ----DRIDLRYHPKTSDLHLQCGYKVERHVGDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 474 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 532
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V L QM L MF P + P I K +W+GKQLFS+++P
Sbjct: 533 DTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILK--PKPLWTGKQLFSLIIP 590
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLI 593
PD E P K + K++ G L G+L
Sbjct: 591 GNVNLIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICY 650
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ Y Q V+ WL G ++ + D + EI +++A++
Sbjct: 651 LELGHELCGQFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYL------EIQRAIKKAKE 704
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+ +++ +H N + + R ++E Q + L+ A
Sbjct: 705 --DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------GG 747
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCA 766
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 748 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK-- 805
Query: 767 AWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
Y P + VENS+L GL P E + H++ R+ G
Sbjct: 806 --------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETG 851
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
+ RRL+ M + YD TVRN+ G Q++Q Y +G E + P LS A
Sbjct: 852 YIQRRLIKAMESVMVHYDSTVRNSVG-QLIQLRYGEDGLCGEIVEFQNLPTIKLSNKAFE 910
Query: 883 E 883
+
Sbjct: 911 K 911
>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
Length = 1009
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 208/851 (24%), Positives = 371/851 (43%), Gaps = 115/851 (13%)
Query: 76 IKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWY 135
I+ + H FL+ + K+L +C C ++ + + PR + A+
Sbjct: 2 IELAKPVYHIGFLTKVKKILECVCFHCSKLKVD---------ETNPRFIRAKKITDAKTK 52
Query: 136 PRMRFKLSSKDLSGKTAIIVE--IDEKLSKKNKKLPDDYWG---------------FIPF 178
R + L+ ++ + + E ++EK N K + G + F
Sbjct: 53 LRAVWDLAKTKMTCEGSDEAEDGLEEKEEFDNGKRKSTHGGCGYKQPLIRKDGLKLYAQF 112
Query: 179 DAQQEENSVKPNRKVLSCKQVSYLLKDV------DPSIREEFILSKDAPFLKCFPVTPNN 232
A +++ R+ L+ +V +LK++ D + EEF + PV P
Sbjct: 113 RANAGDDNGGEGRQQLTAAKVLQILKNISDQDIRDMGLSEEFA-RPEWMITTVLPVPPPQ 171
Query: 233 HRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS--HLVQDCLKISKLHLDKSSR 290
R + S + + LK + R + E + H+VQ+ ++ + H+
Sbjct: 172 VRPSIQMDGTSRGEDDLTHKLSDVLKANANVRRCESEGAPVHVVQEFEQLLQFHIATYMD 231
Query: 291 KDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIG 342
D A + QK K+I ++ ++GKR D R V+TGDPN+ L ++G
Sbjct: 232 NDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNLDQVG 291
Query: 343 IPCQVAERLQISERLNSWNWERLSVCISFRLLEK-GELYVCRKGGLVRIRRID------- 394
+P +A L E + +N ++L + LE G YV R G RID
Sbjct: 292 VPRSIARNLTYPEIVTPYNIDKLQALVRNGPLEHPGAKYVIRDNG----ERIDLRYRKRA 347
Query: 395 ---ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHG 451
L+ G + R + D D+V+ NR PS+H S++ VKV+P S+ +N SP++
Sbjct: 348 GEIPLQYGYRVERHINDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTF-RLNLSVTSPYNA 406
Query: 452 DFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAH-LLMEDSV 510
DFDGD ++ ++PQ++ R E+TE+ + KQ+++ QS + ++ + QD+L + D
Sbjct: 407 DFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCF 466
Query: 511 LLSHLQMQQLQMFCP--HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDF 556
+ L M + M+ P ++ P + +W+GKQ+ SM++P PD
Sbjct: 467 MTKDLVM-NIVMWVPSWDGYIPPPAI-LKPKPMWTGKQIVSMVIPKGINCQTFHSTHPDG 524
Query: 557 EYTFPSKD---VYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVL 611
E T S V I G+LI + G L ++ + +FL Q+V+
Sbjct: 525 ESTLISPGDTRVIIENGELICGIVCKKTVGTAGGGLIHTIMNELGPEAAKNFLGGTQQVV 584
Query: 612 CEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSA 671
WL G ++ + D + + K+ M I + +A+ Q++++ + + L
Sbjct: 585 NYWLLQNGFSIGIGD------TIADKVSMATITNIISQAKQ--RVQEVIITAQQDKL-EV 635
Query: 672 KDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAG 731
+ + R S+E + + L++A DA K +A +DN++ M +G
Sbjct: 636 QPGMTLRE------SFEAKVNQTLNKARDDAGK--------MAQNSLKEDNNVKQMVISG 681
Query: 732 SKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVEN 791
SKG+ + + Q S C+G Q+ R P+ D++ ++ + VEN
Sbjct: 682 SKGSFINISQMSACVGQQNVEGK---RIPYGFKFRTLPHFSKDDHSPESRGF-----VEN 733
Query: 792 SFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGN 849
S+L GL P E F H++ R+ G + RRL+ + D+ YDGTVRN+ G+
Sbjct: 734 SYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD 793
Query: 850 QIVQFSYNIEG 860
I++F Y +G
Sbjct: 794 -IIEFCYGEDG 803
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 227/949 (23%), Positives = 387/949 (40%), Gaps = 182/949 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 19 VQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H F+S I K+L +C PK K I K G
Sbjct: 78 ECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 134
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
RK V + C +N + M K + + + E ++ +
Sbjct: 135 PRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDLTKEKGHGGCGRYQPRIKRSGL 194
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E+ IL D F +
Sbjct: 195 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEEDIILGMDPKFARPE 244
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HL 273
PV P R V + + D+ T L +V R E S H+
Sbjct: 245 WMIVTVLPVPPLAVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQSGAAAHV 300
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K+I ++ ++GKR D
Sbjct: 301 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS 360
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+++ ++G+P +A + E + +N +RL + + G Y+ R
Sbjct: 361 ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 420
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L++G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 421 NG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 476
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 477 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 535
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 536 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILK--PRPLWTGKQIFSLI 593
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K+I G L G+L
Sbjct: 594 IPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHI 653
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSD------LYLASHSCSRKILMDEIF 644
+ Y+ Q V+ WL + G ++ + D YL + +K D I
Sbjct: 654 SYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVI- 712
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVD 701
+++ +H N L + ++ + + L+ + ++ + +Q S+
Sbjct: 713 -------------EVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 759
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
+ N+ +M AGSKG+ + + Q +G Q+ P F+
Sbjct: 760 EY------------------NNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFK 801
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 802 HRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGL 845
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ NQ+VQ Y +G
Sbjct: 846 IDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSI-NQVVQLRYGEDG 893
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 222/965 (23%), Positives = 396/965 (41%), Gaps = 171/965 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLL---------VSPHNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLS---SKDL-SGKTAIIVEIDEKLSKKNKKLPDD------------ 171
++ Q R+ F SK++ G + + + + + ++ P
Sbjct: 126 MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSIERKPGHGGCGRYQPNLRR 185
Query: 172 -------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK 224
W + D+Q++ + L+ ++ +LK + + E FIL D F +
Sbjct: 186 SGLDVTAEWTHVNEDSQEK-------KMALTAERAWEILKHI--TDEESFILGMDPKFAR 236
Query: 225 -------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LS 271
PV P + R + + + + D+ T L ++ I +
Sbjct: 237 PDWMVVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKANNELIRNEQAGAAA 292
Query: 272 HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRND 323
H++ + +K+ + H+ D QK K I I+ ++GKR D
Sbjct: 293 HVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVC 382
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 412
Query: 383 RKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
R G RID L+ G + R + DGD+V+ NR P++H S++ VKV
Sbjct: 413 RDNG----ERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKV 468
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
LP S+ +N C SP++ DFDGD ++ + PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 469 LPWSTF-RMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANKPVM 527
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFS 549
+ QD+LTA + + V + QM + MF P + P I K +W+GKQ+FS
Sbjct: 528 GIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILK--PKPLWTGKQIFS 585
Query: 550 MLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLF 589
+++P PD E P K + K++ G L G+L
Sbjct: 586 LIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLL 645
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ +V Y Q V+ WL + G ++ + D + EI ++
Sbjct: 646 HICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIK 699
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 700 KAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------ 744
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 745 --GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLSN 905
Query: 879 CAISE 883
A +
Sbjct: 906 KAFEK 910
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 222/965 (23%), Positives = 396/965 (41%), Gaps = 171/965 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLL---------VSPHNPKIKEIV 125
Query: 128 VRNPAQWYPRMRFKLS---SKDL-SGKTAIIVEIDEKLSKKNKKLPDD------------ 171
++ Q R+ F SK++ G + + + + + ++ P
Sbjct: 126 MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSIERKPGHGGCGRYQPNLRR 185
Query: 172 -------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK 224
W + D+Q++ + L+ ++ +LK + + E FIL D F +
Sbjct: 186 SGLDVTAEWTHVNEDSQEK-------KMALTAERAWEILKHI--TDEESFILGMDPKFAR 236
Query: 225 -------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LS 271
PV P + R + + + + D+ T L ++ I +
Sbjct: 237 PDWMVVTVLPVPPLSVRPAVIMYGSAKNQ----DDLTHKLADIIKANNELIRNEQAGAAA 292
Query: 272 HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRND 323
H++ + +K+ + H+ D QK K I I+ ++GKR D
Sbjct: 293 HVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 352
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVC 382
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+
Sbjct: 353 FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIV 412
Query: 383 RKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
R G RID L+ G + R + DGD+V+ NR P++H S++ VKV
Sbjct: 413 RDNG----ERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKV 468
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
LP S+ +N C SP++ DFDGD ++ + PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 469 LPWSTF-RMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANKPVM 527
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFS 549
+ QD+LTA + + V + QM + MF P + P I K +W+GKQ+FS
Sbjct: 528 GIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILK--PKPLWTGKQIFS 585
Query: 550 MLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLF 589
+++P PD E P K + K++ G L G+L
Sbjct: 586 LIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLL 645
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ +V Y Q V+ WL + G ++ + D + EI ++
Sbjct: 646 HICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIK 699
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 700 KAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------ 744
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 745 --GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLSN 905
Query: 879 CAISE 883
A +
Sbjct: 906 KAFEK 910
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 224/951 (23%), Positives = 391/951 (41%), Gaps = 187/951 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 16 VQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNQT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKML---------VSPTNPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
+++ Q PR R GK + + K N P+
Sbjct: 126 MKSKGQ--PRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGRYQP 183
Query: 173 ------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
W + D+Q+++ S LS ++V +LK + + E FIL D
Sbjct: 184 SIRRVGLDLTAEWKHVNEDSQEKKIS-------LSAERVWEILKHI--TDEECFILGMDP 234
Query: 221 PFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE---- 269
+ PV P R V + + + D+ T L ++ +
Sbjct: 235 KLARPDWMIVTVLPVPPLAVRPAVVMYGSARNQ----DDLTHKLADIIKSNNELVRNEQA 290
Query: 270 --LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV 316
+H++ + +K+ + H L ++ +K ++ K + G I+
Sbjct: 291 GAAAHVILENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGN 347
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++ + +
Sbjct: 348 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQY 407
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S+
Sbjct: 408 PGAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSM 463
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 464 MGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITP 522
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V L QM + MF P + P I K +W
Sbjct: 523 QANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILK--PKPLW 580
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKL-ISAEGSSW--------- 580
+GKQ+FS+++P PD E P K +IS G + E S
Sbjct: 581 TGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYK--WISPGDTKVMVEHSELVMGILCKKT 638
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
L G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 639 LGTSAGSLLHICMLELGHEVCGQFYGNIQTVVNSWLLLEGHSIGIGDTIADPQTYL---- 694
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 695 --EIQKAIKKAKE--DVIEVIHKAH-NMELEPTPGNTLRQ------TFENQVNRILNDAR 743
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLS 756
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 744 DKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFG 795
Query: 757 FR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRD 811
FR PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 796 FRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGRE 839
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 840 GLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDG 889
>gi|389852852|ref|YP_006355086.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
gi|388250158|gb|AFK23011.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
Length = 907
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 232/938 (24%), Positives = 402/938 (42%), Gaps = 159/938 (16%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S +E+ V + R+G+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSI---CPKCKTIRKE------RQKGAGS 115
+ C GHFG I+ ++H F I ++L S C + K +E + + A +
Sbjct: 67 AGE-CPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMKKLELAKN 125
Query: 116 SRKEQPRVCK----------YCVRNPAQWYPRMRFKLSS------KDLSGKTAIIVEIDE 159
R E ++ K C A YP ++F+ + KD G +
Sbjct: 126 RRSEVNKILKEIHKKARERMVCPHCGAPQYP-IKFEKPTIYWELRKDEQGNEYKHRMMPT 184
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSK 218
++ + +K+PD+ +P E S +P VL+ V + V PSI E I ++
Sbjct: 185 EVRDRLEKIPDED---LPLLGLHPEKS-RPEWMVLTVLPVPPVT--VRPSITLETGIRAE 238
Query: 219 DAPFLKCFPVTPNNHRVTEVPHAFSHEKKL--FFDNWTRHLKKMVDYRGRDIELSHLVQD 276
D K + N+R+ + A + + + +D H+ ++ E S +
Sbjct: 239 DDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTTYINN-----ETSGIPPA 293
Query: 277 CLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNI 336
K + + R E R + N+ GKR + R V++ DP I
Sbjct: 294 KHKSGRPLKTLAQRLKGKEGRFRGNLS---------------GKRVNFSARTVISPDPMI 338
Query: 337 KLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRIDA 395
+ E+G+P ++A L + E++ +N E+L + ++ G YV G RIR +++
Sbjct: 339 SINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPGANYVIDPDG-KRIRIMES 397
Query: 396 --------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCS 447
L++G + R L DGDIVL NR PS+H S++A V+V+P + +N C
Sbjct: 398 NREFLAERLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHRVRVMPYKTF-RLNLAVCP 456
Query: 448 PFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLME 507
P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G ++ QD ++ +LL
Sbjct: 457 PYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGGPIIGGIQDHISGGYLLTR 516
Query: 508 DSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLPPDF-------- 556
+ + +++Q+ MF PD ++ K +WSGK +FS+LLP D
Sbjct: 517 EGAYFTREEVEQMLMFAGVDIKELPEPDKYENGK-PLWSGKTIFSLLLPDDLTVWYRNKL 575
Query: 557 ---------------EYTFPSKD----------VYISGGKLISA--EGSSWLRDYEGNLF 589
E P + VYI GKL+S + ++ R+ +G +
Sbjct: 576 CDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAIDKKAYGRE-DGIIL 634
Query: 590 QYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ Y ++ FL ++ ++ +G T + D L + D I +R
Sbjct: 635 DLIVREYGIERARQFLDQVTKLTIWVITHKGFTTGIDDEDLPEEA------RDRIREVIR 688
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHV 706
EA++ + L+ A L G+ L + E + A L++A +A
Sbjct: 689 EAEE-----------RVQRLIEAYKRGELEPLPGKSLEETLESKIMAVLAEARDNA---- 733
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
+A KY DN + M K G++G +L + Q + LG Q +R
Sbjct: 734 ----GAIAEKYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRG---FKGR 786
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGT 823
+ + GD A+ + V NS+ +GL+P E F H++ R+ D A G
Sbjct: 787 VLSHFKPGDLGARARGF-----VVNSYKSGLSPQEYFFHAMGGRE-GLVDTAVRTAQSGY 840
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
+ RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 841 MQRRLINALQDLKVDYDGTVRDPTG-VIVQFRYGEDGV 877
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 230/965 (23%), Positives = 396/965 (41%), Gaps = 184/965 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ T+ C +C A +
Sbjct: 15 VQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSRCQTC-AGNMT 73
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 74 ECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKML---------VAPSNPKIKEIV 124
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLS-KKNKKLPDDY-------------- 172
+++ Q PR R GK I E E + K+ PD
Sbjct: 125 MKSKGQ--PRKRLAYVYDLCKGKK--ICEGGEDMDITKDGAAPDPNKKQGHGGCGHYQPS 180
Query: 173 -----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP 221
W + D+Q+++ +V + ++V +LK + + E ++L D
Sbjct: 181 LRRTGLDVIAEWKHVNEDSQEKKIAV-------TAERVWEILKHI--TDEECYVLGMDPK 231
Query: 222 F-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DI 268
F + PV P R V F K D+ T L ++
Sbjct: 232 FARPDWMIITVLPVPPLAVRPAVV--MFGATKNQ--DDLTHKLSDIIKANNELKKNEATG 287
Query: 269 ELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVV 317
+H++ + +K+ + H + K+ +K ++ K+ + G I+ +
Sbjct: 288 AAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKSVKS-RLKGKEGR--IRGNL 344
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-K 376
+GKR D R V+T DPN+++ ++G+P VA+ + E + +N +R+ + +
Sbjct: 345 MGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYP 404
Query: 377 GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G Y+ R G RID L+ G + R L D D+V+ NR P++H S++
Sbjct: 405 GAKYIVRDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMM 460
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q
Sbjct: 461 GHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQ 519
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWS 543
+ + ++ + QD+LTA + + V L QM L MF P + P I K +W+
Sbjct: 520 ANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPCILK--PKPLWT 577
Query: 544 GKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRD 583
GKQ+F++++P PD E P K + K++ G L
Sbjct: 578 GKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGT 637
Query: 584 YEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + ++ Y Q V+ WL + G ++ + D + + E
Sbjct: 638 SAGSLLHIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYA------E 691
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I +R+A++ + ++ +H N + + R ++E Q + L+ A
Sbjct: 692 IQRAIRKAKE--DVIGVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT 742
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 743 --------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 794
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 795 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLI 838
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P
Sbjct: 839 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLP 897
Query: 873 VGSLS 877
LS
Sbjct: 898 TIKLS 902
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 228/963 (23%), Positives = 394/963 (40%), Gaps = 170/963 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + ++ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNPKIKEVVMKSKGQPRK 135
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAI----IVEIDEKLSKKNKKLPDDYW 173
V C +N + M + + GK + ++ L + W
Sbjct: 136 RLTYVYDLCKGKNICEGGEDM--DIGKEGEEGKRGTGHGGCGHYQPSIRRQGLDLTAE-W 192
Query: 174 GFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CF 226
D Q + + +++ ++V +LK + + + FIL D F +
Sbjct: 193 KHANEDTQDK-------KIIITAERVYEILKHI--TDEDSFILGMDPKFARPDWMIVTVL 243
Query: 227 PVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCLKI 280
PV P R V F K D+ T L ++ + +H++ D +++
Sbjct: 244 PVPPLAVRPAVV--MFGSAKNQ--DDLTHKLADIIKANNELMRNEQSGAAAHVLTDNIRM 299
Query: 281 SKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+ H + K+ +K ++ K + G I+ ++GKR D R V
Sbjct: 300 LQFHVATFVDNDMPGMPKAMQKSGKPLKAIK-ARLKGKEGR--IRGNLMGKRVDFSARTV 356
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLV 388
+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNG-- 414
Query: 389 RIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 415 --ERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 472
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+
Sbjct: 473 -RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 531
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLPPD 555
LTA + + V L+ Q+ L MF P + P I K +W+GKQ+F++++P +
Sbjct: 532 LTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILK--PQPLWTGKQIFTLIIPGN 589
Query: 556 FEY-----TFPSKD-----VYISGG--KLISAEGS--------SWLRDYEGNLFQYLIKR 595
T P + +IS G K+I G L G+L +
Sbjct: 590 VNMVRTHSTHPDDEDDGVNRWISPGDTKVIVEHGELLMGILCKKSLGASAGSLLHICMLE 649
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
++ Y Q V+ WL + G ++ + D D
Sbjct: 650 LGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDT----------------------IADPQ 687
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL- 713
+Q++ ++ AKD + ++ E L Q + + D ++
Sbjct: 688 TYQEI-----QRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKT 742
Query: 714 ---AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 743 GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK 802
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 803 ----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 846
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ M + YDGTVRN+ G Q++Q Y +G + T E + P LS A
Sbjct: 847 TGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLAGETVEFQNMPTVKLSNKA 905
Query: 881 ISE 883
+
Sbjct: 906 FEK 908
>gi|68300834|gb|AAY89356.1| RNA polymerase IV largest subunit [Anthoceros sp. JL-2005]
Length = 397
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 211/410 (51%), Gaps = 25/410 (6%)
Query: 448 PFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLME 507
P++ DFDGDC ++PQ++ + VE EL+ +++QLIN Q G+ ++SL QD+L AHLL++
Sbjct: 1 PYNADFDGDCFSVFVPQSLPSIVECHELMTVEQQLINPQCGQPIVSLTQDTLLGAHLLVQ 60
Query: 508 DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYI 567
V L+ + L + + P I+K + W+GKQ+F M LPP +Y D+ +
Sbjct: 61 GDVFLTRDYVGTLALLGSSKVAIPAIYKSPQGPRWTGKQVFGMTLPPTLKYQGGGVDI-V 119
Query: 568 SGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSD 626
G L S +GS WL L + + V L L A Q + WLS RG +V LSD
Sbjct: 120 DGEILDSDDGSKWLNSSVTGLVKAIYTEAGPAVTLSHLDAIQSMANWWLSQRGFSVGLSD 179
Query: 627 LYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLS 686
+A S +RK ++ EI L A + +QL+ D F+ +K + + +S
Sbjct: 180 FMVAPDS-TRKTMLKEIGDQLDMAITYASREQLISDP---FIPRSKRNLNVKSNDTTFTK 235
Query: 687 YEKQRSAALSQASVDAFKHVF-WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ AL V F+ +F I+ + ++ DNSLLAM +AGSKG++ KLVQ + C
Sbjct: 236 RSAAKVKALQSLGVAKFQSLFSRRIEYVIMRHIRPDNSLLAMVRAGSKGSMGKLVQQAGC 295
Query: 746 LGLQ----HSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIP-----SAVVENSFLTG 796
LGL + P P G + + + +P + ++ S + G
Sbjct: 296 LGLHLHKGDEVLPCRLGRPFTTE---------GQSLKFSVQDLPGHWEATGLIRRSLVDG 346
Query: 797 LNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNA 846
L P E ++ ++ SR S+ S +LP + + LM FMRD+ AYDGTVRN+
Sbjct: 347 LRPKEFYVQAMCSRSSTPSYGLELPNKIFKSLMLFMRDMYLAYDGTVRNS 396
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 223/936 (23%), Positives = 388/936 (41%), Gaps = 172/936 (18%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PR G+ + + C +C A + C GHFG I + H FL+ + K+L +C C
Sbjct: 32 LMDPRQGVMDRHSRCQTC-AGNMTECPGHFGHIDLAKPVFHVGFLTKVIKVLRCVCFYCS 90
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
+ P++ + +++ Q PR R GK I E +++
Sbjct: 91 KLL---------VSPSNPKIKEIVMKSKGQ--PRKRLAFVYDLCKGKN--ICEGGDEMDL 137
Query: 164 KNKKLPDD-----------------------------YWGFIPFDAQQEENSVKPNRKVL 194
+K +PDD W I D+Q+++ S L
Sbjct: 138 -HKDMPDDPSQQNRKAGHGGCGRYQPSIRRAGLDMTAEWKHINEDSQEKKIS-------L 189
Query: 195 SCKQVSYLLKDVDPSIREEFILSKDAPFLK-----CFPVTPNNHRVTEVPHAFSHEKKLF 249
S ++V + K + S E FIL D F + C + V + +
Sbjct: 190 SAERVWEIFKQI--SEEECFILGMDPKFARPDWMICTVLPVPPLPVRPAVVMYGSARNQ- 246
Query: 250 FDNWTRHLKKMVDYRGRDIE------LSHLVQDCLKISKLH-----------LDKSSRKD 292
D+ T L ++ + +H++ + +K+ + H L ++ +K
Sbjct: 247 -DDLTHKLSDIIKSNNELMRNEQAGAAAHVIAENIKMLQFHVATLVDNDMPGLPRAMQKS 305
Query: 293 SAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQ 352
++ K+ + G I+ ++GKR D R V+T DPN+++ ++G+P +A+ L
Sbjct: 306 GKPLKALKS-RLKGKEGR--IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLT 362
Query: 353 ISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDI 401
E + +N +++ + + G Y+ R G RID L+ G
Sbjct: 363 FPEIVTPFNIDQMQDLVQRGNSQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYK 418
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
+ R + DGD+V+ NR P++H S++ VKVLP S+ +N SP++ DFDGD ++ +
Sbjct: 419 VERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLH 477
Query: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ 521
+PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA + + V L QM L
Sbjct: 478 VPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLL 537
Query: 522 MFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVY 566
M P + P I K +W+GKQ+FS+++P PD E P K +
Sbjct: 538 MHLPIWDGKMPQPTILK--PKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYKWIS 595
Query: 567 ISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSV 617
K++ G L G+L + +V Y Q V+ WL +
Sbjct: 596 PGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLL 655
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
G ++ + D + + EI +++A++ + +++ +H N + +
Sbjct: 656 EGHSIGIGDTIADPQTYA------EIQKAIKKAKE--DVIEVIHKAH-NMELEPTPGNTL 706
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLL 737
R ++E Q + L+ A A K ++ N+L AM +GSKG+ +
Sbjct: 707 RQ------TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNI 752
Query: 738 KLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VV 789
+ Q C+G Q+ P FR PH + Y P + V
Sbjct: 753 NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGFV 796
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAY 847
ENS+L GL P E F H++ R+ G + RRL+ M + YDGTVRN+
Sbjct: 797 ENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSV 856
Query: 848 GNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
G Q++Q Y +G T E + P LS A +
Sbjct: 857 G-QLIQLRYGEDGLCGETVEFQNLPTIKLSNKAFEK 891
>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
Length = 872
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 168/580 (28%), Positives = 273/580 (47%), Gaps = 83/580 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +LS I E
Sbjct: 153 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEIVTPYNINKLSQLIRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G I+ R + DGD VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRTGDIPLQYGWIVERHIQDGDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L + Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVSLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QDSL L + ++ +M + M+ P + P I I +W
Sbjct: 328 QSNKPVMGIVQDSLCGIRKLTKRDTFITFEEMMDILMWVPDWNGIVVQPAI--IRPKPLW 385
Query: 543 SGKQLFSMLLPPDF----------EYTFPSKDVYISGGKLI-SAEGSSWLRDYEGNLFQY 591
+GKQ+ SM +P + + + + G++I + EG+L +
Sbjct: 386 TGKQVISMCIPKGINIQRYEEGTGKLSPTDNGMLVDNGEIIYGVVDKKTVGGKEGDLI-H 444
Query: 592 LIKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
I R + V+ +F Q+V+ WL G ++ + D + + M +I + E
Sbjct: 445 TIMREKGNVVCCNFFTGIQQVVNFWLLHNGFSIGIGD------TIADAATMTDITRTIDE 498
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
A++ QQ++ D+ N L A+ + R S+E + S L+QA D
Sbjct: 499 AKEKV--QQIITDAEANKL-PAEPGMTVRE------SFEHKVSQTLNQAR---------D 540
Query: 710 IQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHE 762
+ + + KD N++ M AGSKG+ + + Q S C+G Q P F++ PH
Sbjct: 541 VAGRSAEISLKDSNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + ++ +I ENS+L GL P E F H++ R+
Sbjct: 600 --------FTKDDYSPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YD TVRN+ G+ I+QF Y +G
Sbjct: 647 TGYIQRRLVKALEDVMVQYDTTVRNSLGD-IIQFIYGEDG 685
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 201 bits (510), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 167/588 (28%), Positives = 276/588 (46%), Gaps = 83/588 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPEIVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD+VL NR P
Sbjct: 328 PHPPPGKTGAKYIIRDDG----QRLDLRYLKRSSDHHLELGYKVERHLNDGDLVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVMELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSL------TAAHLLMEDSVLLSHLQ-MQQLQMFCPHRFLSP 531
K +++ QS R ++ + QD+L T E V ++ L ++ + P +P
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFTEKDVFMNILMWWEEFEGKIP----NP 498
Query: 532 DIFKISKDSVWSGKQLFSMLLPPDF------------EYTFPSKD---VYISGGKLISAE 576
I K +W+GKQ+F++++P E FP+ V I G+++S
Sbjct: 499 AILK--PRPIWTGKQVFNLIIPKQINLIRYSAWHNESEKGFPTPGDTVVRIEKGEVLSGT 556
Query: 577 -GSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
L G+L + + D FL Q ++ WL +G ++ + D +
Sbjct: 557 LCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGD------TI 610
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
+ M++I + A+ QQL+ + L ++E R++ S+E Q +
Sbjct: 611 ADAATMEKINETIANAK--IKVQQLIEKAQEKKL----EAEPGRTMME---SFENQVNQV 661
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
L++A DA N A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 662 LNKARDDA--------GNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 713
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R P+ + D ++ + VENS+L GL P E F H++ R+
Sbjct: 714 ---RIPYGFNGRTLPHFTKDDKGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLI 765
Query: 815 SDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ + QF Y +G
Sbjct: 766 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VTQFLYGEDG 812
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 225/957 (23%), Positives = 396/957 (41%), Gaps = 185/957 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + ++ C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIKYPETMEGGRPKLGGLMDPRQGVIDRSSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLL---------VSPNNPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIV--EID---EKLSKKNKKLPDDY---------- 172
+++ Q PR R GK E+D E + NK+ P
Sbjct: 126 MKSKGQ--PRKRLTFVYDLCKGKNICEGGDEMDVNKENVDDPNKEQPRKQGHGGCGRYQP 183
Query: 173 ------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREE-FILSKD 219
W + D+Q+++ + L+ ++V +LK + I EE FIL D
Sbjct: 184 NLRRVGLDVTAEWKHVNEDSQEKKIN-------LTAERVWEILKHI---IDEECFILGMD 233
Query: 220 APFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE--- 269
+ + PV P R V + + + D+ T L ++ +
Sbjct: 234 PKYARPDWMIVTVLPVPPLCVRPAVVMYGSARNQ----DDLTHKLADILKANNELVRNEQ 289
Query: 270 ---LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKD 315
+H++ + +K+ + H L ++ +K ++ K + G I+
Sbjct: 290 AGTAAHVLAENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRG 346
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE 375
++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +++ + +
Sbjct: 347 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMDKMQELVRRGNSQ 406
Query: 376 -KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S
Sbjct: 407 YPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMS 462
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 463 MMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIIT 521
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSV 541
Q+ + ++ + QD+LTA + + V L QM L MF P + P I K +
Sbjct: 522 PQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMTLLMFLPIWDGKMPQPCILK--PKPL 579
Query: 542 WSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWL 581
W+GKQ+FS+++P PD E P K + K++ G L
Sbjct: 580 WTGKQIFSLIIPGNVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIKGILCKKTL 639
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 640 GTSAGSLLHIIFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL----- 694
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 695 -EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARD 744
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P F
Sbjct: 745 KT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 796
Query: 758 R---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
R PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 797 RKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG 840
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
G + RRL+ M + YD TVRN+ G Q++Q Y +G T E
Sbjct: 841 LIDTAVKTAETGYIQRRLIKAMESVMVNYDSTVRNSVG-QLIQLRYGEDGLCGETVE 896
>gi|440301955|gb|ELP94337.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
invadens IP1]
Length = 1650
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 228/933 (24%), Positives = 402/933 (43%), Gaps = 147/933 (15%)
Query: 8 EGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEV----------TNPRLGLPNPTNE 57
E + + + + I + + + +K++V+E+ EV ++PR+G + +E
Sbjct: 2 EAIGMETKRVQQIKFTLMSTEDIKKMAVLEVVKAEEVDDGKPVEGGLSDPRMGPFDKGDE 61
Query: 58 CSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI---RKERQKGAG 114
C +C R C GHFG+I+ + +P ++ I K+L +CP C + ER
Sbjct: 62 CKTCRCT-RSDCPGHFGYIQLYAPVYNPVYVKYILKVLKCVCPSCHRLYCHDDERLNSLK 120
Query: 115 SSRKEQPR-VCKYCVRNPAQWYPRMRFKLSSK----DLSGKTAIIVEIDEKL--SKKNKK 167
S +E+ + V ++ Q R K + K + + ++D +L SK K
Sbjct: 121 SKGEERLKDVYDIIDKDYIQCGKRKDKKGAEKQQQHEEEDRICHSAKVDYELPKSKLENK 180
Query: 168 LPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF----- 222
L Y G ++ EE+ P + K+++ D ++ IL D +
Sbjct: 181 LEIRYKG-----SKAEESKFMPRDALNILKEMT------DEDVK---ILGFDPKYSHPKF 226
Query: 223 --LKCFPVTPNNHRVTEVPHAFSHEKK----LFFDNWTRHLKKMVDYR------GRDIEL 270
+ FPV P R V S K + ++N R +++ + + R E+
Sbjct: 227 MVFEVFPVAPPAVRPQAVSDKGSRNNKDDLTVMYENIIRANEELKNEQSKVSGINRYDEI 286
Query: 271 SHLVQD-----CLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
VQ CLK K D S+K + + +S G + ++GKR D
Sbjct: 287 FKEVQTICAKVCLKNVKDLPDNPSKKKYKSIEDR----LSGKQGRMRLN--LMGKRVDFS 340
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V++ DPN+ + E+G+P +A+ L E + +N ++L ++ + G + RK
Sbjct: 341 ARTVISPDPNLSMDEVGVPTGIAKILTFPEVVTRYNMDKLQSLVNAGMNSYPGAFMLQRK 400
Query: 385 GG-LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTIN 442
G R+ D L +GD+++R L DGD V+ NR PS+H S++ +VLP S+ +N
Sbjct: 401 NGETFRLNGGDKILNIGDVVHRFLMDGDYVIFNRQPSLHRMSMMGHRARVLPFST-FRMN 459
Query: 443 PLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAA 502
+P++ DFDGD ++ +IPQ + AR E++ L+ Q+I + ++ + QD+ +
Sbjct: 460 LCDTTPYNADFDGDEMNLHIPQTLEARAEISVLMMTPTQIITPEKNCPIMGIVQDTQCGS 519
Query: 503 HLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFSMLLPP----DFE 557
+++ + + L + + ++ I I K +W+GKQ+F+++LPP + +
Sbjct: 520 YIITKRQTFIEKLIFYNILQWLDKLNVTVPIPAILKPKPLWTGKQVFTLILPPINYENGD 579
Query: 558 YT----------FPSKDVYISGGKLISA---EGSSWLRDYEGNLFQYLIKRYRDKVLD-- 602
Y+ + VYI G L++ S + ++ G + Y+D ++
Sbjct: 580 YSIGTLLKKGPCYDDSKVYIHKGILVTGYLCNSSGFGKNQSGIVHSI----YKDVGMEAT 635
Query: 603 --FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLM 660
F Q + W+ RG TV L D+ + R +REA
Sbjct: 636 KIFFNQTQATVNSWMLTRGFTVGLGDIVVKQDVHDR----------IREAVKKS------ 679
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYG 718
+ + +L D E + G+ + + E + S LS + K I A K
Sbjct: 680 IQNSEKYLDHKHDDE-IEPVAGQTMFQNLETKLSLLLSNVKTECDK-----ITKDALK-- 731
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSF---RFPHELSCAAWNRLR 772
KDN+LL M +GSKG+ + Q +G Q + P F PH W
Sbjct: 732 -KDNNLLQMVDSGSKGSNSNISQMVAFVGKQEINNQRIPFGFYKRTLPH-----YWKE-- 783
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR----DSSFSDNADLPGTLTRRL 828
++ ENSF+ GL+P E F H++ R D++ + G + RRL
Sbjct: 784 -------DYGFVTRGFCENSFVMGLSPQEVFFHAMAGRQGIIDTAIKTSET--GYIQRRL 834
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
+ M D+ YD TVR G+ +V+F Y +G
Sbjct: 835 VKSMEDVQCKYDRTVRRTTGD-MVEFMYGSDGV 866
>gi|242398380|ref|YP_002993804.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
gi|242264773|gb|ACS89455.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
Length = 905
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 239/952 (25%), Positives = 395/952 (41%), Gaps = 187/952 (19%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---GAVSEVTNP--------RLGLPNPTNECSSCGAK 64
++ I G+ + E K+S EI SE P RLG+ +P C +CGA
Sbjct: 7 VIGSIEFGVLSPQEIRKMSAAEITVPDTYSEDGYPIDGGLMDRRLGVIDPNLRCETCGA- 65
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK--------GAGSS 116
+ K C GHFG I+ ++H F I + L S C +C I+ ++ +
Sbjct: 66 NYKECPGHFGHIELARPVIHVGFAKTIYRTLESTCRECGRIKLTDEEIEDYFGKLNINEA 125
Query: 117 RK--------------EQPRVCKYCVRNPAQW-----YPRMRFKLSSKDLSGKTAIIVEI 157
RK ++ VC +C Q+ P + ++L + D G +
Sbjct: 126 RKSEIDALISEIHKKAKERMVCPHC--GAPQFSIKFERPTIYWELRT-DEEGNEYRHRMM 182
Query: 158 DEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFIL 216
++ + +K+PD +P ENS +P VL+ V + V PSI E I
Sbjct: 183 PSEIRDRLEKIPDKD---LPLLGLNPENS-RPEWMVLTVLPVPPV--SVRPSITLESGIR 236
Query: 217 SKDAPFLKCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDY 263
++D K + N R+ + A + +FDN T +
Sbjct: 237 AEDDLTHKLVDIIRINARLKQNIEAGAPQLIIEDLWDLLQYHVTTYFDNETSGIPPAKHK 296
Query: 264 RGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRND 323
GR L L Q R E R +KN+ GKR +
Sbjct: 297 SGRP--LKTLAQ--------------RLKGKEGRFRKNLS---------------GKRVN 325
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELYV 381
R V++ DP I + E+G+P VA L + E++ +N E+L I EK G YV
Sbjct: 326 FSARTVISPDPMISINEVGVPLIVAMELTVPEKVTDFNLEKLRKMI-LNGPEKYPGANYV 384
Query: 382 CRKGGLVRIRRI--------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
G RIR + D +++G + R L +GD+VL NR PS+H S++A V+V+
Sbjct: 385 IDPQGR-RIRLMESNLETIADMIDIGWTVERHLMNGDVVLFNRQPSLHRMSIMAHRVRVM 443
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +++ + G ++
Sbjct: 444 PYKTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHILSPRYGGPIIG 502
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSM 550
QD ++ +LL + + +++ + MF PD + + WSGK +FS+
Sbjct: 503 GIQDHISGGYLLTREGAYFTKYEVEHMLMFAGVEVKELPKPDKVE-NGIEYWSGKTVFSL 561
Query: 551 LLPPDF-----------------------EYTFPSKD----------VYISGGKLISA-- 575
LLP + E PS+ VYI GKL+S
Sbjct: 562 LLPENLTIWYRNKLCDDPSQCEPIEKLIEEKLIPSEKEVKKVATDGFVYILKGKLLSGAI 621
Query: 576 EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
+ ++ R+ +G L +++ Y ++ FL ++ ++ +G T + D L +
Sbjct: 622 DKKAYGRE-DGELLNIIVREYGVERARQFLDQVTKLAIWVITHKGFTTGIDDEDLPGEAK 680
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+R + EI + + + L+ A + L G+ L + E +
Sbjct: 681 AR---IKEII--------------MEAEGKVQRLIEAYKNGELEPLPGKTLEETLESRIM 723
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSL 752
A LS+A +A K +A +Y +N + M K G++G +L + Q + LG Q
Sbjct: 724 AVLSEARDNAGK--------VAERYLGMNNHTVIMAKTGARGKILNITQMAAILGQQSIR 775
Query: 753 APLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
+R + +AGD AK +I NS+ +GL P E F H++ R+
Sbjct: 776 GKRLYR---GYRSRVLSHFKAGDLGARAKGFI-----VNSYKSGLTPQEYFFHAMGGRE- 826
Query: 813 SFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
D A G + RRL+ ++DL YDGTVR+ G +VQF Y +G
Sbjct: 827 GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IVVQFRYGEDGV 877
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 225/896 (25%), Positives = 369/896 (41%), Gaps = 135/896 (15%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +P++G + +C +C ++ C GHFG I+ + H F+ + K+L +C
Sbjct: 43 VGGLMDPKMGTIDRNFKCQTC-SEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCY 101
Query: 101 KCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLS-SKDLSGKTAI---IVE 156
C ++ + + P V R Q + + L+ +K++ ++ E
Sbjct: 102 SCGKLKVDMR---------DPMVQNIVRRIKPQHRLKAIWDLAKAKNVCEADSLEENDAE 152
Query: 157 IDEKLSKKNKKLPDDYWG------------------FIPFDAQQEENSVKPNRKVLSCKQ 198
DE K + G F P +QEE S +P R+ +S +
Sbjct: 153 QDEYGENSGPKPKTGHGGCGHHQPAYRKEGLKLIAVFKPSKDKQEEGS-EPERRNISAAE 211
Query: 199 VSYLLKDVDPSIREEFILSKDAPF-------LKCFPVTPNNHR--VTEVPHAFSHEKKLF 249
+LK + + I+ +A + L PV P R ++ A E L
Sbjct: 212 CHNILKKI--PDEDLLIMGLNAEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLT 269
Query: 250 FDNWTRHLKKMVDYRGRDIE--LSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNS 307
+ LK R + E +V + + + H+ D A + Q
Sbjct: 270 Y-KLGEILKASAQVRKLEAEGVPPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPV 328
Query: 308 SGLRW--------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNS 359
+R ++ ++GKR D R V+TGDPN++L ++G+P +A L ER+
Sbjct: 329 KAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTP 388
Query: 360 WNWERLSVCIS-FRLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTD 408
+N L I+ G Y + G RID L+ G I+ R L D
Sbjct: 389 YNINYLQQLINNGPATYPGARYYVKDTG----ERIDLKYRKSGEPIPLQFGWIVERHLKD 444
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
GD VL NR PS+H S+++ VKV+ S+ +N SP++ DFDGD ++ ++PQ+
Sbjct: 445 GDYVLFNRQPSLHKMSMMSHRVKVMNYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEET 503
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-- 526
R EL+++ + +Q+I+ Q+ + ++ + QD+L +Q L ++ P
Sbjct: 504 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWD 563
Query: 527 -RFLSPDIFKISKDSVWSGKQLFSMLLPP-------DFEYTFP----SKDVYISGGKLIS 574
P I K +W+GKQL SM +P D E P ++V + G+L+
Sbjct: 564 GTIPPPAILK--PRPMWTGKQLVSMCIPKGINIAAHDNERPSPIDVTDQNVLVDNGELVY 621
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRD--KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASH 632
+ + N ++I R K DF A Q V+ WL G +V + D S
Sbjct: 622 GTITKSMAGAASNGLIHVIFRELGHIKARDFFSAMQRVINFWLLHNGFSVGIGDTIADSA 681
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
+ M + L EA+DT Q + N M + + R + E S
Sbjct: 682 T------MAAVNNRLVEAKDTV---QAFISEAENNKMKPRPGMTIRE------TLEAAVS 726
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ--- 749
L++A A K +++ DN++ M +G+KG+ + + Q S C+G Q
Sbjct: 727 GELNKARDWAGKTAQDNLK--------ADNNVKQMVVSGAKGSFINISQMSGCVGQQIVE 778
Query: 750 HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHS 806
P FR PH D ++ + VENS+L GL P E F H+
Sbjct: 779 GKRIPFGFRHRTLPH---------FSKDDYGPESRGF-----VENSYLRGLTPQEFFFHA 824
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+ G + RRL+ M DL YDGTVRN+ G I+QF Y +G
Sbjct: 825 MGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVGYDGTVRNS-GGDIIQFLYGEDG 879
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 1124 DCHQIM--DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIV 1181
+ Q+M D +D+TR++ +N GI+AG L I+ G + H+ ++
Sbjct: 1318 NLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGRNALYKELHGVIASGGSYVNYRHMALL 1377
Query: 1182 ANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVD 1241
+ + G + + G+ + + + + F ++AA G VD+ QG +
Sbjct: 1378 CDLMCNKGHLMSITRHGI-----NRTDAGALSRCSFEETVEILLEAAAVGDVDDCQGVAE 1432
Query: 1242 ALGWGKVPSVGTGGHFDI 1259
+ G++ +GTG FD+
Sbjct: 1433 NVLLGQMAPMGTGA-FDV 1449
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella
verticillata]
Length = 1016
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 167/612 (27%), Positives = 286/612 (46%), Gaps = 97/612 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + E+G+P +A L E + +N ++L + E
Sbjct: 269 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARTLTYPELVTPYNIDKLQKLVRNGPTEH 328
Query: 377 -GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
G +YV R G +RID L+LG + R + DGD+V+ NR PS+H S++
Sbjct: 329 PGAVYVIRDDG----QRIDLRWNKREVPLQLGWKVERHINDGDVVIFNRQPSLHKMSMMG 384
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
++V+P S+ +N SP++ DFDGD ++ ++PQ++ R E+TE+ + +Q+++ QS
Sbjct: 385 HKIRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQS 443
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP--HRFL-SPDIFKISKDSVWSG 544
+ ++ + QD+L + L+ + L M+ P FL +P I K +W+G
Sbjct: 444 NKPVMGIVQDTLCGVRKFTKRDCFLTKEMVMNLVMWVPGWEGFLPTPAILK--PKPLWTG 501
Query: 545 KQLFSMLLPPD-----FEYTFPSKD----------VYISGGKLI------SAEGSSWLRD 583
+Q+ SM++P + T P + V + G+LI G+S
Sbjct: 502 RQMLSMIIPKGINCICYHSTHPDNEESDISPGDTKVIVENGELICGIVCKKTVGTSG--- 558
Query: 584 YEGNLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G L ++ ++ +V F Q V+ WL G ++ + D R +M
Sbjct: 559 --GGLIHVIMNQHGPEVAKTFFNGCQTVVNYWLLQHGFSIGIGDTV-----ADRSTVM-T 610
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + A T N L++ + + L K + R ++E + AL+ A DA
Sbjct: 611 ITSIISNA--TNNVNDLIIQAQQDKL-ECKPGMTLRE------TFESLVNRALNTARDDA 661
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF 759
K +A + +DN++ M +GSKG+ + + Q + C+G Q+ P F++
Sbjct: 662 GK--------MAQQSLREDNNVKQMVISGSKGSFINVSQMTACVGQQNVEGKRIPFGFKY 713
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D++ ++ + VENS+L GL P E F H++ R+
Sbjct: 714 RTLPH---------FTKDDHSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDT 759
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVG 874
G + RRL+ + D+ YDGTVRN+ G+ ++QF Y +G + QP
Sbjct: 760 AVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGH-VIQFCYGEDGMD--ACHVEKQP-- 814
Query: 875 SLSACAISEAAY 886
L +S AA+
Sbjct: 815 -LDTVKMSNAAF 825
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 225/896 (25%), Positives = 369/896 (41%), Gaps = 135/896 (15%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +P++G + +C +C ++ C GHFG I+ + H F+ + K+L +C
Sbjct: 43 VGGLMDPKMGTIDRNFKCQTC-SEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCY 101
Query: 101 KCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLS-SKDLSGKTAI---IVE 156
C ++ + + P V R Q + + L+ +K++ ++ E
Sbjct: 102 SCGKLKVDMR---------DPMVQNIVRRIKPQHRLKAIWDLAKAKNVCEADSLEENDAE 152
Query: 157 IDEKLSKKNKKLPDDYWG------------------FIPFDAQQEENSVKPNRKVLSCKQ 198
DE K + G F P +QEE S +P R+ +S +
Sbjct: 153 QDEYGENSGPKPKTGHGGCGHHQPAYRKEGLKLIAVFKPSKDKQEEGS-EPERRNISAAE 211
Query: 199 VSYLLKDVDPSIREEFILSKDAPF-------LKCFPVTPNNHR--VTEVPHAFSHEKKLF 249
+LK + + I+ +A + L PV P R ++ A E L
Sbjct: 212 CHNILKKI--PDEDLLIMGLNAEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLT 269
Query: 250 FDNWTRHLKKMVDYRGRDIE--LSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNS 307
+ LK R + E +V + + + H+ D A + Q
Sbjct: 270 Y-KLGEILKASAQVRKLEAEGVPPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPV 328
Query: 308 SGLRW--------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNS 359
+R ++ ++GKR D R V+TGDPN++L ++G+P +A L ER+
Sbjct: 329 KAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTP 388
Query: 360 WNWERLSVCIS-FRLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTD 408
+N L I+ G Y + G RID L+ G I+ R L D
Sbjct: 389 YNINYLQQLINNGPATYPGARYYVKDTG----ERIDLKYRKSGEPIPLQFGWIVERHLKD 444
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
GD VL NR PS+H S+++ VKV+ S+ +N SP++ DFDGD ++ ++PQ+
Sbjct: 445 GDYVLFNRQPSLHKMSMMSHRVKVMNYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEET 503
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-- 526
R EL+++ + +Q+I+ Q+ + ++ + QD+L +Q L ++ P
Sbjct: 504 RAELSQIAWVPRQIISPQANKPVMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWD 563
Query: 527 -RFLSPDIFKISKDSVWSGKQLFSMLLPP-------DFEYTFP----SKDVYISGGKLIS 574
P I K +W+GKQL SM +P D E P ++V + G+L+
Sbjct: 564 GTIPPPAILK--PRPMWTGKQLVSMCIPKGINIAAHDNERPSPIDVTDQNVLVDNGELVY 621
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRD--KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASH 632
+ + N ++I R K DF A Q V+ WL G +V + D S
Sbjct: 622 GTITKSMAGAASNGLIHVIFRELGHIKARDFFSAMQRVINFWLLHNGFSVGIGDTIADSA 681
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
+ M + L EA+DT Q + N M + + R + E S
Sbjct: 682 T------MAAVNNRLVEAKDTV---QAFISEAENNKMKPRPGMTIRE------TLEAAVS 726
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ--- 749
L++A A K +++ DN++ M +G+KG+ + + Q S C+G Q
Sbjct: 727 GELNKARDWAGKTAQDNLK--------ADNNVKQMVVSGAKGSFINISQMSGCVGQQIVE 778
Query: 750 HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHS 806
P FR PH D ++ + VENS+L GL P E F H+
Sbjct: 779 GKRIPFGFRHRTLPH---------FSKDDYGPESRGF-----VENSYLRGLTPQEFFFHA 824
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+ G + RRL+ M DL YDGTVRN+ G I+QF Y +G
Sbjct: 825 MGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVGYDGTVRNS-GGDIIQFLYGEDG 879
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 1124 DCHQIM--DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIV 1181
+ Q+M D +D+TR++ +N GI+AG L I+ G + H+ ++
Sbjct: 1318 NLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGRNALYKELHGVIASGGSYVNYRHMALL 1377
Query: 1182 ANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVD 1241
+ + G + + G+ + + + + F ++AA G VD+ QG +
Sbjct: 1378 CDLMCNKGHLMSITRHGI-----NRTDAGALSRCSFEETVEILLEAAAVGDVDDCQGVAE 1432
Query: 1242 ALGWGKVPSVGTGGHFDI 1259
+ G++ +GTG FD+
Sbjct: 1433 NVLLGQMAPMGTGA-FDV 1449
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 207/872 (23%), Positives = 363/872 (41%), Gaps = 101/872 (11%)
Query: 76 IKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ--KGAGSSRKEQPRVCKYCVRNPAQ 133
I+ + H F++ + K+L IC C ++ + K A + R P+V V
Sbjct: 2 IELAKPVFHIGFITKVKKMLECICWNCGKLKIDANDPKFAETQRFRDPKVKMNAV----- 56
Query: 134 WYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN-----------KKLPDDYWGFIPFDAQQ 182
W + D+ G+ +I E +SK N +K WG + +
Sbjct: 57 WQLAKMKMICESDVKGEGSIDTETGIDMSKSNHGGCGNAQPVIRKEGLKLWG--TWKKSK 114
Query: 183 EENSVKPNRKVLSCKQVSYLLKDVDPSIR------EEFILSKDAPFLKCFPVTPNNHRVT 236
+ +P R++L+ +V + + + PS+ E D + PV P R +
Sbjct: 115 DVEGGEPERRLLTPMEVHSVFRHI-PSVDLVRMGLSENYARPDWMIITVLPVPPPTVRPS 173
Query: 237 EVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE--LSHLVQDCLKISKLHLDKSSRKDSA 294
L + +K + + ++E +H++++ + + H+ D A
Sbjct: 174 VEQGGMKSHDDLTY-KLADIIKANANVKKGEVEGAPAHVIKEFEDLLQYHVATYMDNDIA 232
Query: 295 --------EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQ 346
R K+I ++ ++GKR D R V+TGDPN+ L E+G+P
Sbjct: 233 GQPKALQKSGRAIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 292
Query: 347 VAERLQISERLNSWNWERLSVCISFRLLEK-GELYVCRKGGLVRIRRID----------A 395
+A L ER+ +N +L + E G Y+ R G RID
Sbjct: 293 IARTLTYPERVTPFNIHKLQQLVRNGPDEHPGAKYILRDTG----ERIDLRYNKNAGDTP 348
Query: 396 LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDG 455
L+ G + R L +GD+V+ NR PS+H S++ V+V+P S+ +N SP++ DFDG
Sbjct: 349 LQYGWTVERHLQNGDVVIFNRQPSLHKMSMMGHRVRVMPYSTF-RLNLSVTSPYNADFDG 407
Query: 456 DCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHL 515
D ++ ++PQ+ R E+TE+ + +Q++ Q+ + + + QD+L ++
Sbjct: 408 DEMNLHVPQSEETRAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFMAKS 467
Query: 516 QMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPS--------KDVY 566
+ + M+ P + P + +W+GKQ+ SM++P ++ DV
Sbjct: 468 HVMNILMWVPGWNGIVPPPAILKPQQLWTGKQILSMVIPKGINHSRNDDKQGLDNPNDVG 527
Query: 567 I---SGGKLISAEGSSWLRDYEGNLFQYLIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTV 622
+ G L + +G L ++K + + DF A Q V+ W G ++
Sbjct: 528 MMIEDGEILYGVVNKKTVGSSQGGLIHIIMKEKGWEACRDFFTATQMVVNYWFLHNGFSI 587
Query: 623 SLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQG 682
+ D + + + M+EI + +A+ Q ++ D+ +N L E +L+
Sbjct: 588 GIGD------TIADRQTMEEITNEIAKAK--LKVQGIVSDAQLNKL----KQEPGMTLRE 635
Query: 683 EHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQH 742
S+E S L+ A K+ A SK N++ M AGSKG+ + + Q
Sbjct: 636 ---SFEAGVSQVLNGARDTVGKN--------AESSLSKQNAVKQMVIAGSKGSFINISQM 684
Query: 743 SLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLEC 802
S C+G Q R P+ D + ++ + VENS+L GL P E
Sbjct: 685 SACVGQQMVEGK---RIPYGFKFRTLPHFTKDDYSPESRGF-----VENSYLRGLTPQEF 736
Query: 803 FIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
F H++ R+ G + RRL+ + D+ YDGTVRN+ G+ I+ F Y +G
Sbjct: 737 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVGVKYDGTVRNSLGD-IINFVYGEDG 795
Query: 861 TSTPTGEIGDQPVGSLSACAISEAAYSALDQP 892
+ E LS A EA + P
Sbjct: 796 LDAASVEYQVLDTMRLSNAAFEEAYRVDVTDP 827
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 163/567 (28%), Positives = 262/567 (46%), Gaps = 58/567 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N E L + E
Sbjct: 349 LMGKRVDFSARTVITGDPNLELDQVGVPRSIAMTLTYPERVTPYNIEYLQTLVRNGPREY 408
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L ++ DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 409 PGARYVVRDTGERIDLRYNKKADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRV 468
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 469 KIMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKP 527
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L L +Q + ++ P +P I K +W+GKQ+
Sbjct: 528 VMGIVQDTLCGIRKLTLRDTFLDWHAVQNILLWVPDWDGTIPTPAILK--PKPLWTGKQI 585
Query: 548 FSMLLPPDFEYTF----PSKDVYISGGKLI-------SAEGSSWLRDYEGNLFQYLIKRY 596
S+ +P PS + G LI + +G L + +
Sbjct: 586 LSLAIPRGINIARSSDPPSSNPLTDDGMLIENGDILYGVVDKKTVGAAQGGLIHVVFREK 645
Query: 597 RDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+V L+ Q V+ WL G ++ + D + + K M + R + N
Sbjct: 646 GPEVCRGLFTGLQTVVNYWLFHNGFSIGIGD------TIADKGTM--AYVKERIGKARAN 697
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
QQL D+HM L AK + R ++E++ L+QA D + A
Sbjct: 698 VQQLQDDAHMARL-KAKPGMTIRE------TFEREVERELNQARDDTGQS--------AQ 742
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGD 775
K DN++ M AGSKG+ + + Q S+ +G Q R P D
Sbjct: 743 KSLKDDNNVKQMVTAGSKGSFINISQMSVFVGQQSVEGK---RIPFGFKHRTLPHFTKDD 799
Query: 776 NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMR 833
+ A+ + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 800 FSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 854
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 855 DVTVCYDGTVRNSLGD-LIQFIYGEDG 880
Score = 45.1 bits (105), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G + +C +CG + C GHFG I+ + H FL + K+L IC C +
Sbjct: 57 DPRMGTIDRNFKCQTCG-EGMAECPGHFGHIELARPVFHVGFLVKVKKILECICVNCGKL 115
Query: 106 RKE 108
+ +
Sbjct: 116 KAD 118
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 224/965 (23%), Positives = 394/965 (40%), Gaps = 166/965 (17%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNEC 58
+ P + + GI E ++SV E G + + +PR G+ + + C
Sbjct: 7 KAPLRTVKKVQFGILAPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVIDRNSRC 66
Query: 59 SSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRK 118
+C A + C GHFG I + H F++ K+L +C C + Q
Sbjct: 67 QTC-AGNMTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFYCSKMLVSPQ-------- 117
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKK------NKKLPDDY 172
P++ + ++ Q PR R GK D L+K+ NKK
Sbjct: 118 -NPKIKEVVSKSKGQ--PRKRLAYVYDLCKGKKICEGGEDMDLTKEGAPADPNKKAGHGG 174
Query: 173 WGF-----------IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP 221
G I + + + + + +S ++V +LK + + E F+L D
Sbjct: 175 CGHYQPSLRRTGLDITAEWKHVNDESQEKKIFVSAERVWEILKHI--TDEECFVLGMDPK 232
Query: 222 F-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE----- 269
F + PV P R V + + D+ T L ++ +
Sbjct: 233 FARPDWMIITVMPVPPLAVRPAVVMFGAAKNQ----DDLTHKLSDIIKANNELMRNEASG 288
Query: 270 -LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVV 317
+H++ + +K+ + H + ++ +K ++ K + G I+ +
Sbjct: 289 AAAHVITENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVK-ARLKGKEGR--IRGNL 345
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-K 376
+GKR D R V+T DPN+++ ++G+P +A+ + E + +N ER+ + +
Sbjct: 346 MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIERMQELVRRGNSQYP 405
Query: 377 GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G Y+ R G RID L+ G + R L D D+V+ NR P++H S++
Sbjct: 406 GAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMM 461
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q
Sbjct: 462 GHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQ 520
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWS 543
+ + ++ + QD+LTA + + V + QM + MF P + P I K +W+
Sbjct: 521 ANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPTWDGKMPQPCILK--PKPLWT 578
Query: 544 GKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRD 583
GKQ+F++++P PD E P K + K++ G L
Sbjct: 579 GKQIFTLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGQLIMGILCKRTLGA 638
Query: 584 YEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + Y Q V+ WL + G ++ + D + E
Sbjct: 639 SAGSLLHIVFLELGHETAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYM------E 692
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 693 IQRAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT 743
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 744 --------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 795
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 796 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 839
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P
Sbjct: 840 DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGEAVEFQNLP 898
Query: 873 VGSLS 877
LS
Sbjct: 899 TIKLS 903
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 155/578 (26%), Positives = 272/578 (47%), Gaps = 75/578 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPNI L E+G+P +A+ L E + +N+++L + E
Sbjct: 346 LMGKRVDFSARTVITGDPNISLDEVGVPRTIAKTLTFPEIVTPFNFQQLQEAVDNGPNEH 405
Query: 376 KGELYVCRKGG-LVRIRRIDALEL----GDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R+ G + + R A+EL GD + R + DGDIVL NR PS+H S++ V
Sbjct: 406 PGARYVIRQNGDRIDLSRAGAIELQLNVGDKVERHIRDGDIVLFNRQPSLHKMSMMGHRV 465
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+V+P S+ +N SP++ DFDGD ++ ++PQ+ + EL+E+ + +Q+++ Q+ R
Sbjct: 466 RVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETKAELSEICMVPRQIVSPQANRP 524
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC---PHRFLSPDIFKISKDSVWSGKQL 547
++ + QD+L + L+ + L M+ + P I K +W+GKQ+
Sbjct: 525 VMGIVQDTLCGVRKFTKRDSFLTKEMVMSLCMWVRDWDGQLPQPAIIK--PVPLWTGKQI 582
Query: 548 FSMLLPP-----DFEYTFP---SKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
FS+++PP + P S D+ K++ +G + + +L
Sbjct: 583 FSLIIPPGTNMIGYHSQHPDNESSDISPGDTKVVIYDGELVCGIICKKTVGTSQNSLIHV 642
Query: 592 LIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ K + +K +F Q V+ WL G ++ + D + + M + + A
Sbjct: 643 IWKEHGPEKTRNFFDGCQAVVNNWLFSYGFSIGIGDTIADAQT------MQVVATTISNA 696
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
++ + + +H N L + S + ++ E R+ ++ AS
Sbjct: 697 KNKVT--EYISQAHRNVLQPSPGMTIQESFES-RVNQELNRARDIAGAS----------- 742
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF---PHELS 764
A K + N++ M AGSKG+ + + Q + C+G Q+ P F++ PH
Sbjct: 743 ---AQKSLNDANNVKQMVVAGSKGSFINISQMTACVGQQNVEGRRIPFGFKYRTLPH--- 796
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 797 ------FTKDDQSPESRGF-----VENSYLRGLTPSELFFHAMGGREGLIDTAVKTAETG 845
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YD +VRNA G Q++QF+Y +G
Sbjct: 846 YIQRRLVKALEDVSVGYDCSVRNALG-QVLQFAYGEDG 882
Score = 44.7 bits (104), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D R++ +NI GI+AG L L + I G + HL ++ + ++
Sbjct: 1330 VDNVDAGRTYSNNIVEITETLGIEAGRAALLKELRNVIEFDGSYVNYRHLSMLCDVMTKH 1389
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + + G+ + + +S ++ F ++AA +D QG + + G+V
Sbjct: 1390 GILMAITRHGI-----NRAETSALARSSFEETVEILMEAAACAELDQCQGVAENIIMGQV 1444
Query: 1249 PSVGTG 1254
+GTG
Sbjct: 1445 APLGTG 1450
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 150/575 (26%), Positives = 267/575 (46%), Gaps = 72/575 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ L ++G+P A L ER+ +N ++ + +
Sbjct: 353 LMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNIHKMQELVRNGPDQH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G +V R+ G RID L+LG I+ R + DGD ++ NR PS+H S+
Sbjct: 413 PGAKHVIREDG----SRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ R E+ L A+ +++
Sbjct: 469 MGHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQGHETRAEVANLCAVPHNIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD++ ++ + V++ + ++ + ++ P + P I W+G
Sbjct: 528 QKNGPLMGIVQDTMAGCWMMTKKDVMIDYQELMNILLWVPSWDGVVPPPAIIKPQPRWTG 587
Query: 545 KQLFSMLLPPDFEYTFPS-----------KDVYISGGKLISAEGSSW---LRDYEGNLFQ 590
KQ+ S+ PP Y P+ K++ + G+++ G W + + +
Sbjct: 588 KQVASLFFPPGLNYFMPASKNDDNPHEEKKEILVQNGEIMW--GRIWKQVVGASQSGVVH 645
Query: 591 YLIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
Y+ R + ++F Q ++C W+ G +V + D H ++ EI + E
Sbjct: 646 YIFNDRGPEAAVEFFSGCQRIVCHWMLHHGFSVGIGDTIPDDH------MVGEIEGAIVE 699
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVF 707
++L VD ++ + S++ +L G + ++E Q AAL A A F
Sbjct: 700 -------EKLQVDKYVEQVQ----SDAMETLPGMTIRETFESQTKAALDNARNKAGDAAF 748
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+++ N++ M +GSKG+ + Q + +G Q SL R P
Sbjct: 749 ALMKSC--------NNVGVMVNSGSKGSSTNVSQMTAAVG-QQSLE--GKRLPFGFKYRV 797
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 798 LPHFPKDDYSPASRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQ 852
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + ++ YDGTVRN+ G+ I+QF+Y +G
Sbjct: 853 RRLVKALEEIMIKYDGTVRNSLGD-ILQFTYGEDG 886
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
+ +P+LG + C++CG + ++ C GHFG I+ + H F++ I K+L S+C C
Sbjct: 53 LNDPKLGTIDRNTMCATCG-ESQQECPGHFGHIELAAPVFHVGFITKIKKILESVCNNCG 111
Query: 103 KTIRKER 109
K + ER
Sbjct: 112 KLLEDER 118
>gi|120561237|gb|ABM27004.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 960
Score = 199 bits (507), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 193/739 (26%), Positives = 308/739 (41%), Gaps = 141/739 (19%)
Query: 264 RGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISN-------------SSGL 310
+G D +L+H++ + ++ + L S K + E +++ I I+ G
Sbjct: 155 KGED-DLTHMLTNIIRYNNLLGKNESSKTAIEYKEQLQIHITTYIDNEVSGVPPALQKGG 213
Query: 311 RWIKDV--------------VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISER 356
R IK + ++GKR D R V+TGDP+I ++E+G+P VA+ L ER
Sbjct: 214 RMIKSLSARLKGKEGRIRGHLMGKRVDFSARTVITGDPHISIEEVGVPLSVAKTLTFPER 273
Query: 357 LNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRID--------ALELGDIIYRPLTD 408
+ S+N +R+ ++ G YV + G RRID +E+GDI+ R +
Sbjct: 274 VTSYNLDRMQALVNNAKNYPGARYVINERG----RRIDLEVAKTTPLIEIGDIVERHMVT 329
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
GD VL NR PS+H S++A V+V+P SS +N C+P++ DFDGD ++ ++PQ+
Sbjct: 330 GDTVLFNRQPSLHKMSMMAHIVRVMPYSS-FRLNVNVCAPYNADFDGDEMNLHMPQSYET 388
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRF 528
EL L + L++ QS + + L QD+L L ++ M L M C F
Sbjct: 389 VAELQTLSMVSSLLVSPQSNKPVNGLVQDALCGIRKLTMRDTFVNFEDMMDLVM-CLKEF 447
Query: 529 ---LSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYE 585
P IFK +W+GKQ+ S+ LP D+ ++G L A+ R
Sbjct: 448 PVIPPPAIFK--PIPLWTGKQIISLCLP----------DIDLTGNTLTHADHEDIFRSTT 495
Query: 586 GNLFQ------------------------------YLIKR-------------YRD---- 598
+L + YL K+ Y D
Sbjct: 496 KDLNETCTRKAESEFYSATPTDSRVLIQSGIIVHGYLCKKTVGASSGGIVHIIYNDHGPR 555
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC-NFQ 657
DF+ + ++ WL+ G +V + D ++ + + I L + Q T ++
Sbjct: 556 AACDFIDNSSRIVNAWLTNSGFSVGIGDALVS--EITHAVFSSTIDTQLHKVQKTIESYH 613
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY 717
+ NF D E T+ E Q L++A A K
Sbjct: 614 ANELKPEGNF-----DCEQTK---------ENQIVGLLAKARDSAGKTTLIS-------- 651
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNT 777
G DN+L M +AGSKG++L + Q S C+G Q R P D++
Sbjct: 652 GHPDNNLKQMVEAGSKGSVLNICQVSACVGQQMVEGK---RIPFGFKDRTLPHFTKYDHS 708
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDL 835
A+ + V NSF+ GL P E F H++ R+ G + RRL+ + D+
Sbjct: 709 PAARGF-----VRNSFVKGLTPSELFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDI 763
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISL 895
DGTVRN+ + I+QF Y +G E P LS + Y+ +D +
Sbjct: 764 TVKSDGTVRNSR-DDIIQFYYGEDGFDGTAIEYQTFPTMMLSESELYSRYYNGIDSEYAQ 822
Query: 896 LETSPLLNLKNVLECGSKK 914
L+ L L+ VL +
Sbjct: 823 LKKDQEL-LRRVLRLAEDR 840
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 231/963 (23%), Positives = 390/963 (40%), Gaps = 178/963 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRMSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLL---------VSPNNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY--------------- 172
+++ Q PR RF GK + + K+N P
Sbjct: 127 MKSKGQ--PRKRFAFVYDLCKGKNICEGGDEMDVQKENPDDPSSQAKRSGHGGCGRYQPS 184
Query: 173 -----------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP 221
W + D+Q+++ S LS ++V + K + S E FIL D
Sbjct: 185 IRRAGLDLTAEWKHVNEDSQEKKIS-------LSAERVWEIFKHI--SDEECFILGMDPK 235
Query: 222 FLKCFPVTPNNHRVTEVPHAFSHEKKLFF-----DNWTRHLKKMVDYRGRDIELS----- 271
+ + P+ VT +P + N K+ D + EL+
Sbjct: 236 YAR-----PDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELTRNEQA 290
Query: 272 ----HLVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDISNSSGL-----RWIKDVVLG 319
H++ + +K+ + H+ D + QK I G I+ ++G
Sbjct: 291 GAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPIKAIKGRLKGKEGRIRGNLMG 350
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGE 378
KR D R V+T DPN+++ ++G+P VA+ L E + +N +++ + + G
Sbjct: 351 KRVDFSARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPGA 410
Query: 379 LYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G RID L+ G + R + DGD+V+ NR P++H S++
Sbjct: 411 KYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGH 466
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
VKVLP S+ +N SP++ DFDGD ++ ++PQ++ R E+ + +Q+I QS
Sbjct: 467 RVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQSN 525
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGK 545
+ ++ + QD+LTA + + V L QM L M P + P I K +W+GK
Sbjct: 526 KPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPQPSILK--PKPLWTGK 583
Query: 546 QLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYE 585
Q+FS+++P PD E P K + K++ G L
Sbjct: 584 QVFSLIIPGNVNVTRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGSSA 643
Query: 586 GNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G+L + +V Y Q V+ WL + G ++ + D + + EI
Sbjct: 644 GSLLHICMLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYT------EIQ 697
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
+++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 698 RAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT-- 746
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR--- 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 747 ------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRT 800
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 801 LPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDT 844
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVG 874
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E P
Sbjct: 845 AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQSLPTL 903
Query: 875 SLS 877
LS
Sbjct: 904 KLS 906
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 221/943 (23%), Positives = 387/943 (41%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 20 VQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 78
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 79 ECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 135
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G I E ++ +
Sbjct: 136 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDITKEKGHGGCGRYQPRIRRSGL 195
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E FIL D F +
Sbjct: 196 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFILGMDPKFARPE 245
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 246 WMICTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 301
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 302 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 361
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 362 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 421
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L++G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 422 NG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 477
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 478 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 536
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 537 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 594
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K+I G L G+L
Sbjct: 595 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHI 654
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
V Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 655 SYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADAKTYQDIQNTIKKA 708
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 709 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 762
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 763 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 808
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 809 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 852
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 853 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 894
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 226/973 (23%), Positives = 399/973 (41%), Gaps = 168/973 (17%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNEC 58
+ P ++ + GI + E ++SV + G + + +PR G+ + + C
Sbjct: 7 KAPIRVVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRC 66
Query: 59 SSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKER 109
+C A + C GHFG I + H F++ K+L +C P I++
Sbjct: 67 QTC-AGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVSPHNPKIKEVV 125
Query: 110 QKGAGSSRKEQPRVCKYC-------------VRNPAQWYPRMRFKLSSKDLSGKTAIIVE 156
K G RK V C + Q P+ + G+
Sbjct: 126 MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKEGQEQPQAADRKPGHGGCGR------ 179
Query: 157 IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFIL 216
L + + + W + D+Q++ + VL+ ++ +LK + + E FIL
Sbjct: 180 YQPNLRRSGLDVSAE-WKHVNEDSQEK-------KIVLTAERAWEILKHI--TDEESFIL 229
Query: 217 SKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE 269
D F + PV P + R V + + + D+ T L ++ +
Sbjct: 230 GMDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSAKNQ----DDLTHKLADIIKSNNELLR 285
Query: 270 ------LSHLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKD 315
+H++ + +K+ + H+ D QK K I I+
Sbjct: 286 NEQAGAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRG 345
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE 375
++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +++ + +
Sbjct: 346 NLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQ 405
Query: 376 -KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S
Sbjct: 406 YPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMS 461
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I
Sbjct: 462 MMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIIT 520
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSV 541
Q+ + ++ + QD+LTA + + V + QM + M P + P I K +
Sbjct: 521 PQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNILMHLPSWDGKMPQPCILK--PKPL 578
Query: 542 WSGKQLFSMLLPPDFEY-----TFPSKD-----VYISGG--KLISAEGS--------SWL 581
W+GKQ+FS+++P + T P ++ +IS G K++ G L
Sbjct: 579 WTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGQYKWISPGDTKVMVEHGELVMGILCKKTL 638
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + V Y Q V+ WL + G ++ + D +
Sbjct: 639 GTSAGSLLHICMLELGHDVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL----- 693
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 694 -EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARD 743
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P F
Sbjct: 744 KT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 795
Query: 758 R---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
R PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 796 RKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREG 839
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E +
Sbjct: 840 LIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQN 898
Query: 871 QPVGSLSACAISE 883
P LS A +
Sbjct: 899 LPTIKLSNKAFEK 911
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 224/958 (23%), Positives = 391/958 (40%), Gaps = 165/958 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I+ + H F+ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIELSKPVFHVGFIKQTIKILRCVCFYCSKMLVS---------PTNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSV 187
++ Q PR R GK + L+K ++ PDD G
Sbjct: 127 MKTKGQ--PRKRLTFVYDLCKGKNICEGGDEMDLAKDPERNPDDPGGPNKKQGHGGCGRY 184
Query: 188 KPN----------------------RKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK- 224
+PN + LS ++V + K + S E FI+ D + +
Sbjct: 185 QPNIRRAGLDLSAEWKHANEDTQEKKIALSAERVYEIFKHI--SDEECFIMGMDPKYARP 242
Query: 225 ------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV---DYRGRDIEL---SH 272
PV P R V + + + D+ T L ++ + R+ + +H
Sbjct: 243 DWMVATVLPVPPLCVRPAVVMYGSARNQ----DDLTHKLADIIKSNNELARNEQAGAAAH 298
Query: 273 LVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDD 324
++ + K+ + H+ D QK K I I+ ++GKR D
Sbjct: 299 VLSENTKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 358
Query: 325 CFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCR 383
R V+T DPN+++ ++G+P +A+ L E + +N E + + + G Y+ R
Sbjct: 359 SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNLENMQELVRRGNSQYPGAKYIVR 418
Query: 384 KGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
G RID L+ G + R + DGD+V+ NR P++H S++ VKVL
Sbjct: 419 DNG----ERIDLRYHPKSSDLHLQCGYRVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVL 474
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P S+ +N SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 475 PWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMG 533
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSM 550
+ QD+LTA + V + QM + +F P + P I K +W+GKQ+FS+
Sbjct: 534 IVQDTLTAVRKMTRRDVFIEKEQMMNILLFLPIWDGKMPQPAILK--PKPLWTGKQIFSL 591
Query: 551 LLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQ 590
++P PD E + P + K++ G L G+L
Sbjct: 592 IIPGNVNMIRTHSTHPDDENSGPYNWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLH 651
Query: 591 Y-LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+++ ++ F Q V+ WL + G ++ + D ++ EI +++
Sbjct: 652 ICMLELGHEECGRFYGNIQTVVNTWLLLEGHSIGIGDTIADPNT------YIEIQKAIKK 705
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 706 AKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------- 749
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHEL 763
A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 750 -GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 808
Query: 764 SCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 809 K----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 852
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P L+
Sbjct: 853 ETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLA 909
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 233/969 (24%), Positives = 397/969 (40%), Gaps = 190/969 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRLSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLL---------VSPSNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD---------------- 171
+++ Q PR RF GK I E +++ + K PDD
Sbjct: 127 MKSKGQ--PRKRFAFVYDLCKGKN--ICEGGDEMDIQ-KDNPDDPANQPKRSGHGGCGRY 181
Query: 172 -------------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSK 218
W + D+Q+++ + LS ++V + K + S E FIL
Sbjct: 182 QPSIRRIGLDLTAEWKHVNEDSQEKKIN-------LSAERVWEIFKHI--SDEECFILGM 232
Query: 219 DAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFF-----DNWTRHLKKMVDYRGRDIELS-- 271
D F + P+ VT +P + N K+ D + EL+
Sbjct: 233 DPKFAR-----PDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELTRN 287
Query: 272 -------HLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWI 313
H++ + +K+ + H + K+ +K ++ KN + G I
Sbjct: 288 EQAGAAAHVIAENIKMLQFHVATLVDNDMPGMPKAMQKSGKPIKAIKN-RLKGKEGR--I 344
Query: 314 KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL 373
+ ++GKR D R V+T DPN+++ ++G+P VA+ L E + +N +++ +
Sbjct: 345 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQDLVRRGN 404
Query: 374 LE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 405 SQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHK 460
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ VKVLP S+ +N SP++ DFDGD ++ ++PQ++ R E+ + +Q+
Sbjct: 461 MSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQI 519
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKD 539
I QS + ++ + QD+LTA + + V L QM + M P + P I K
Sbjct: 520 ITPQSNKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPSILK--PK 577
Query: 540 SVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------S 579
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 578 PLWTGKQVFSLIIPGNVNVIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKK 637
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 638 TLGSSGGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL--- 694
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 695 ---EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDA 742
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 743 RDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPF 794
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSR 810
FR PH + Y P + VENS+L GL P E F H++ R
Sbjct: 795 GFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGR 838
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E
Sbjct: 839 EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGETVEF 897
Query: 869 GDQPVGSLS 877
P LS
Sbjct: 898 QSLPTIKLS 906
>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
Length = 1479
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 225/925 (24%), Positives = 387/925 (41%), Gaps = 161/925 (17%)
Query: 44 VTNPRLGLPNPT-NECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PR+G + EC++C K C GHFG++K + H + +I +L +C +C
Sbjct: 75 ILDPRMGTTDKKGTECATCKGK-LIDCAGHFGYVKLELPVFHIGYFKNIIAILQQVCKEC 133
Query: 103 KTI---RKERQKGAGSSRKEQPRVC--KYCVRNPAQWYPRMRFKLSSKDLSG---KTAII 154
+ +ERQ+ R + + + + A R R S +G +T
Sbjct: 134 SRVMLPEEERQQYLKRFRNPRLEIVPKRALSKKLADKCKRCRICPSCGAANGAVKRTGAS 193
Query: 155 VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEF 214
++I + KN +L + Y ++ E +VK N ++ + ++ + D++P IR E
Sbjct: 194 LKIVHEKYSKNPELMEAY-------VKEFEEAVKHNDQLKA--NLARVQDDLNP-IRVES 243
Query: 215 ILSKDAPF---------------LKCFPVTPNNHR--VTEVPHAFSHEKKLFFDNWTRHL 257
ILSK +P L PV P R V A S+E D+ T L
Sbjct: 244 ILSKISPMDCELLDVADRPEHLILTHLPVPPVCIRPSVEMEGQAGSNE-----DDITMKL 298
Query: 258 KKMVDYRG-------RDIELSHLVQ--DCLKIS-KLHLDKSSRKDSAEVRQKKNIDISNS 307
++++ + + +++L++ D L+I ++++ SA+ +
Sbjct: 299 IQIIEVNNVLRQGLEKGLAINNLMENWDFLQIQCAMYINSELPGLSAQYQGPGKPLRGFV 358
Query: 308 SGLRW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
L+ + + GKR D R V++ DPN+++ E+G+P +A+ + E ++ N E
Sbjct: 359 QRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIE 418
Query: 364 RLSVCI----------SFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVL 413
+ + +F + G + G R R L+ GD++ R L DGD++L
Sbjct: 419 MIRERVRNGMNKHPGANFVRFKSGGTQYLKYGD--RRRVASELKYGDVVERHLHDGDVLL 476
Query: 414 INRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELT 473
NR PS+H S++A +V+P ++ N C+P++ DFDGD ++ + PQ AR E
Sbjct: 477 FNRQPSLHKMSIMAHRARVMPWRTL-RFNECVCTPYNADFDGDEMNIHCPQTEEARAEAI 535
Query: 474 ELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDI 533
L+++ L ++G L++ QD LTA+++L L Q+ L + ++ D+
Sbjct: 536 NLMSVHNNLCTPKNGEILVAATQDFLTASYILTARDHFLDRAQVGALIAYMGDALMAVDL 595
Query: 534 FK---ISKDSVWSGKQLFSMLLPPD-----------FEYTFPSKD----------VYISG 569
I +W+GKQLFS+L+ P E + KD V I
Sbjct: 596 PTPAIIKPVELWTGKQLFSVLIRPRAVDRVFVNLEVAEKNYSKKDTRHMCPRDGYVCIQN 655
Query: 570 GKLISAE-GSSWLRDYEGN-LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSD 626
+++ + G + L N LF L Y ++ + ++ WL RG +V + D
Sbjct: 656 SEIMCGQLGKATLGSGNKNGLFYVLNSEYGSEQTASCMNRVAKLSARWLGTRGFSVGIDD 715
Query: 627 LYLASH--------------SCSRKILMDEIF-YGLREAQDTCNFQQLMVDSHMNFLMSA 671
+ +C +I E F G Q CN +Q + + L +
Sbjct: 716 VTPGHRLQDEKGKVVDRGYGACDERI---EAFKRGTLALQPGCNAEQTLEAEVLGILSTV 772
Query: 672 KDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAG 731
+++ N+ + N+ L M G
Sbjct: 773 RETAG-----------------------------------NVCLDELPRHNAPLIMALCG 797
Query: 732 SKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVEN 791
SKG+ + + Q C+G Q A R P + + + G+ T AK + V N
Sbjct: 798 SKGSTINISQMVACVGQQ---AVGGTRPPDGFAERSLPHFKRGEKTPAAKGF-----VAN 849
Query: 792 SFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGN 849
SF +G+ P E F H++ R+ G ++RRLM + DL YDGTVRN+ G
Sbjct: 850 SFFSGMRPTEFFFHTMAGREGLVDTAVKTAETGYMSRRLMKALEDLSLRYDGTVRNSTGG 909
Query: 850 QIVQFSYNIEGTSTPTGEIGD-QPV 873
IVQ SY +G E D QPV
Sbjct: 910 -IVQLSYGDDGMEPTEMEGADAQPV 933
>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
Length = 870
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 162/570 (28%), Positives = 274/570 (48%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN++L ++G+P +A L E + +N +L++ + E
Sbjct: 151 LMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEMVTPYNIHKLTLLVRNGPNEH 210
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G I+ R L D D VL NR PS+H S+
Sbjct: 211 PGARYVFRDTG----ERIDLKYHKRAGDIALQYGWIVERHLMDNDPVLFNRQPSLHKMSM 266
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++
Sbjct: 267 MTHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 325
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + V + + Q+ + + P + P+ I +W+G
Sbjct: 326 QSNKPVMGIVQDTLCGIRKMTLRDVFIEYDQVMNILYWIPTWDGVIPEPTIIKPKPLWTG 385
Query: 545 KQLFSMLLP-------PDFEYTFPSKD----VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQ+ SM++P D ++T+ SKD + I G ++ + G L ++
Sbjct: 386 KQMLSMVIPKGINIERKDEKFTYLSKDDTGMLIIDGEIMLGVVNKKTVGATGGGLIHAVM 445
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V D Q+V+ WL G ++ + D +A R+I + +A+D
Sbjct: 446 REKGPQVCADLFGNIQKVVNYWLLHNGFSIGIGDT-IADAPTVRQIT-----NTILKAKD 499
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++ + N L E +L+ S+E+ S L+QA D K +++
Sbjct: 500 KV--QEIILRAQNNEL----PPEPGMTLRE---SFEQNVSQVLNQARDDVGKATADALKD 550
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M AGSKG+ + + Q S C+G Q R P S +
Sbjct: 551 L--------NNVKQMVSAGSKGSNINISQMSACVGQQIVEGK---RIPFGFSDRSLPHFT 599
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 600 KDDYSPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 654
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ GN ++QF Y +G
Sbjct: 655 ALEDIMVHYDGTTRNSLGN-VLQFIYGEDG 683
>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma
mansoni]
Length = 1785
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 162/592 (27%), Positives = 275/592 (46%), Gaps = 91/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ L ++G+P +A+ L E + +N + L +
Sbjct: 241 IRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNIDHLQKLVQNG 300
Query: 373 LLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHP 422
L G ++ R+ G RID L++G I+ R + + D V+ NR P++H
Sbjct: 301 TLYPGAKFIVRENG----DRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPTLHK 356
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ VKVLP S+ +N SP++ DFDGD ++ ++PQ++ + E+++L + + +
Sbjct: 357 MSMMCHRVKVLPWSTF-RLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLV 415
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
I Q+ + ++ + QD+LTA + + + V L+ +M L M+ P R P I+K +
Sbjct: 416 ITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGRMPKPAIYKPQR- 474
Query: 540 SVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------S 579
+W+GKQLFS+++P P+ E P K + K+I +G
Sbjct: 475 -LWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYKWISPGDTKVIVDDGDLISGILCKK 533
Query: 580 WLRDYEGNLFQYL-IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + ++ + D+V F Q V+ WL + G T+ ++D L + R
Sbjct: 534 TLGSGAGSLIHIVALEHHHDQVNMFFNNIQTVVNNWLLIEGHTIGIADT-LYDQATRR-- 590
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+I + +A+D F+ ++D N+ + + R ++E + L+ A
Sbjct: 591 ---QISGTITKAKDAV-FE--IIDQAHNYDLQPTPGNTLRQ------TFENSVNKILNDA 638
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+ A + SK N+ M AGSKG+ + + Q C+G Q+ P
Sbjct: 639 RDKT--------GSCAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPF 690
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSR 810
FR PH + Y P + VENS+L GL P E F H++ R
Sbjct: 691 GFRHRTLPHFIQ----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGR 734
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ M + YDGTVRN NQ++Q Y +G
Sbjct: 735 EGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQI-NQLIQLRYGEDG 785
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 228/959 (23%), Positives = 392/959 (40%), Gaps = 171/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C +
Sbjct: 17 VQFGILSPDEIRRMSVTDGGIRFPETMEGGQPKMGGLMDPRQGVIDRNSCCKTCTG-NMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 76 QCPGHFGHIDLSKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSNPKIKEIVMKSKGQPRK 135
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIV-----EIDEKLSKKNKKLPDDY 172
V C ++ + M S TA + + L +
Sbjct: 136 RLAFVYDLCKGKHICEGGDEMDIGKEDDGRSISTAKNTHGGCGRYQPNIRRTGLDLTAE- 194
Query: 173 WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------C 225
W + D+Q++ + LS ++V + K + + E FIL D F +
Sbjct: 195 WKHVNEDSQEK-------KIALSAERVWEIFKHI--TDEECFILGMDPKFARPDWMIVTV 245
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHLVQDCLK 279
PV P + R V + + + D+ T L +V +H++ + +K
Sbjct: 246 LPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIVKSNNELARNEASGAAAHVISENIK 301
Query: 280 ISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
+ + H L ++ +K ++ K + G I+ ++GKR D R
Sbjct: 302 MLQFHVATLVDNDMPGLPRAMQKSGKPLKAVK-ARLKGKEGR--IRGNLMGKRVDFSART 358
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE------LYVC 382
V+T DPN+++ ++G+P +A+ L E + +N E++ L+++G Y+
Sbjct: 359 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKM-----MELVQRGNSQYPGAKYIV 413
Query: 383 RKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
R G RID L+ G + R + DGD+V+ NR P++H S++ VKV
Sbjct: 414 RDNG----ERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNRQPTLHKMSMMGHRVKV 469
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
LP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 470 LPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVM 528
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFS 549
+ QD+LTA + + V + QM L MF P + P I K +W+GKQ+FS
Sbjct: 529 GIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPQPAILK--PKPLWTGKQVFS 586
Query: 550 MLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLF 589
+++P PD E P K + K++ G L G+L
Sbjct: 587 LIIPGNVNLIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGASAGSLL 646
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+V Y Q V+ WL + G ++ + D + EI ++
Sbjct: 647 HICFLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIK 700
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 701 KAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------ 745
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR PH
Sbjct: 746 --GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 803
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 804 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 847
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E P LS
Sbjct: 848 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGEMVEFQSLPTVKLS 905
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 223/908 (24%), Positives = 371/908 (40%), Gaps = 164/908 (18%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------ 99
+PR G+ + C +C A + C GHFG I+ + H F+S I K+L +C
Sbjct: 57 DPRQGVIERSGRCQTC-AGNMTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKL 115
Query: 100 ------PKCKTIRKERQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTA 152
PK K I K G RK V + C +N + M K + +
Sbjct: 116 LVDSNNPKIKDILT---KSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEED 172
Query: 153 IIVE--------IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
I E ++ + +L + W + D+Q++ + +LS ++V + K
Sbjct: 173 ITKEKGHGGCGRYQPRIRRSGLELFAE-WKHVNEDSQEK-------KILLSPERVHEIFK 224
Query: 205 DVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHL 257
+ S E+ IL D F + PV P R V + + D+ T L
Sbjct: 225 RI--SDEEDLILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQ----DDLTHKL 278
Query: 258 KKMVDYRG--RDIELS----HLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNID 303
+V R E S H++ + +K+ + H L R R K+I
Sbjct: 279 ADIVKINNQLRRNEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIK 338
Query: 304 ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
++ ++GKR D R V+T DPN+++ ++G+P +A + E + +N +
Sbjct: 339 QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNID 398
Query: 364 RLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIV 412
RL + + G Y+ R G RID L++G + R + DGDIV
Sbjct: 399 RLQELVRRGNSQYPGAKYIIRDNG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIV 454
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVEL 472
+ NR P++H S++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+
Sbjct: 455 IFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 513
Query: 473 TELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFL 529
EL + + ++ QS R ++ + QD+LTA + V L ++ L MF +
Sbjct: 514 QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMP 573
Query: 530 SPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEG 577
P I K +W+GKQ+FS+++P PD E + P K + K+I G
Sbjct: 574 QPAILK--PRPLWTGKQIFSLIIPGHINVIRTHSTHPDDEDSGPYKHISPGDTKVIVENG 631
Query: 578 S--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSD-- 626
L G+L + Y+ Q V+ WL + G ++ + D
Sbjct: 632 ELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGDSI 691
Query: 627 ----LYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQG 682
YL + +K D I +++ +H N L + +
Sbjct: 692 ADAKTYLDIQNTIKKAKQDVI--------------EVIEKAHNNELEPTPGNTLRQ---- 733
Query: 683 EHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQH 742
++E Q + L+ A + A K S+ N+ +M AGSKG+ + + Q
Sbjct: 734 ---TFENQVNRILNDARDKT--------GSSAQKSLSEYNNFKSMVVAGSKGSKINISQV 782
Query: 743 SLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFL 794
+G Q+ P F+ PH + Y P + VENS+L
Sbjct: 783 IAVVGQQNVEGKRIPFGFKHRTLPHFIK----------------DDYGPESRGFVENSYL 826
Query: 795 TGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIV 852
GL P E F H++ R+ G + RRL+ M + YD TVRN+ NQ+V
Sbjct: 827 AGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVV 885
Query: 853 QFSYNIEG 860
Q Y +G
Sbjct: 886 QLRYGEDG 893
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 223/930 (23%), Positives = 385/930 (41%), Gaps = 163/930 (17%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR G+ + + C +C A + C GHFG I + H F++ K+L +C C +
Sbjct: 34 DPRQGVIDRQSRCQTC-AGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKM 92
Query: 106 RKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKN 165
P++ + +++ Q PR R GK I E ++L
Sbjct: 93 L---------VSPTNPKIKEVVMKSKGQ--PRKRLAHVYDLCKGKN--ICEGGDELDL-G 138
Query: 166 KKLPDDYWGF-------------------IPFDAQQEENSVKPNRK----VLSCKQVSYL 202
K +PDD G I D E V + + VL+ ++V +
Sbjct: 139 KDIPDDPSGMQNKKQGHGGCGRYQPNIRRIALDLTAEWKHVNEDSQEKKIVLTAERVWEI 198
Query: 203 LKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTR 255
K + S E FIL D + + PV P R V + + + D+ T
Sbjct: 199 FKHI--SDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVVMYGSARNQ----DDLTH 252
Query: 256 HLKKMVDYRGRDIE------LSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQ 298
L ++ + +H++ + +K+ + H L ++ +K ++
Sbjct: 253 KLADIIKANNELLRNEQAGGAAHVIAENVKMLQFHAATLVDNDMPGLPRAMQKSGRPLKA 312
Query: 299 KKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLN 358
K + G I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E +
Sbjct: 313 LK-ARLKGKEGR--IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVT 369
Query: 359 SWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLT 407
+N +++ + + G Y+ R G RID L+ G + R +
Sbjct: 370 PFNIDKMQDLVRRGNSQYPGAKYIIRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIR 425
Query: 408 DGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIG 467
+GD+++ NR P++H S++ VKVLP S+ +N SP++ DFDGD ++ ++PQ++
Sbjct: 426 EGDLIIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSME 484
Query: 468 ARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP-- 525
R E+ + +Q+I Q+ + ++ + QD+LTA + + V L QM L M P
Sbjct: 485 TRAEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMHLPIW 544
Query: 526 -HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKL 572
+ P I K +W+GKQ+FS+++P PD E K + K+
Sbjct: 545 DGKMPQPAILK--PKLMWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDGAYKWISPGDTKV 602
Query: 573 ISAEGS--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVS 623
+ G L G+L + +V Y Q V+ WL + G ++
Sbjct: 603 MVEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQTVINNWLLLEGHSIG 662
Query: 624 LSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE 683
+ D + EI +++A++ + +++ +H N + + R
Sbjct: 663 IGDTIADPQTYL------EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ---- 709
Query: 684 HLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHS 743
++E Q + L+ A A K ++ N+L AM AGSKG+ + + Q
Sbjct: 710 --TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 759
Query: 744 LCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLT 795
C+G Q+ P FR PH + Y P + VENS+L
Sbjct: 760 ACVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLA 803
Query: 796 GLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQ 853
GL P E F H++ R+ G + RRL+ M + YDGT+RN+ G Q++Q
Sbjct: 804 GLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVG-QLIQ 862
Query: 854 FSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
Y +G + T E QP LS A +
Sbjct: 863 LRYGEDGLAGETVEFQTQPTIKLSNKAFEK 892
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 243/977 (24%), Positives = 413/977 (42%), Gaps = 158/977 (16%)
Query: 20 ISLGISTDTEKEKLSVMEI------------GAVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E +SV +I V + +PRLG + +C +CG +
Sbjct: 17 VQFGIFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDRNYKCQTCG-EGMN 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC----------------KTIRKERQK 111
C GHFG I+ + H ++S I K+ +C C K +R+
Sbjct: 76 DCPGHFGHIELAKPVFHIGYISKIKKVCECVCMHCGKLLLDEHSELMRQAIKIKDPKRRF 135
Query: 112 GAGSSRKEQPRVCKYCV---RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLS-----K 163
A S + VC+ V +PAQ+ S+ G T V D LS K
Sbjct: 136 NAVWSLCKAKMVCETEVPSDNDPAQYV--------SRGGCGNTQPSVRKD-GLSLVGTWK 186
Query: 164 KNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFL 223
K+K D + +P R+V+S +V + K + P ++D
Sbjct: 187 KDKGADD---------------ADQPERRVISADEVLNVFKHISPEDSVRLGFNEDFARP 231
Query: 224 KCFPVTPNNHRVTEVPHAFS-HEKKLFFDNWTRHL----KKMVDYRGRDIELS--HLVQD 276
+ +T V + S +E + D+ T L K ++ + +I S H++Q+
Sbjct: 232 EWMILTVLPVPPPPVRPSISFNETQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQE 291
Query: 277 CLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
+ + H+ D A + QK K+I I+ ++GKR D R
Sbjct: 292 SEALLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSART 351
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-GELYVCRKGGL 387
V++GDPN+ L ++G+P +A L E + +N +RL+ + E G Y+ R G
Sbjct: 352 VISGDPNLDLDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYIIRDNG- 410
Query: 388 VRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS 437
RID + GDI + R + D D VL NR PS+H S++A VKV+P S+
Sbjct: 411 ---DRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYST 467
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
+N SP++ DFDGD ++ ++PQ+ R EL++L A+ +Q+++ QS + + + QD
Sbjct: 468 F-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQD 526
Query: 498 SLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFSMLLPPDF 556
+L + + Q+ + + P + P + +WSGKQ+ S+ +P
Sbjct: 527 TLCGVRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPIILKPKPLWSGKQILSIAIPSGI 586
Query: 557 EYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLY 605
KD + I G + + G L + + K+ L+
Sbjct: 587 HLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICARLF 646
Query: 606 AA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH 664
+ Q+V+ WL G ++ + D +A R+I + I R+ ++ Q
Sbjct: 647 SNLQKVVNFWLLHNGFSIGIGDT-IADEKSMREI-TEAIIVAKRKVEEVTKEAQAN---- 700
Query: 665 MNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
L++AK + R S+E L++A A + ++++L N++
Sbjct: 701 ---LLTAKHGMTLRE------SFEDSVVRYLNEARDKAGRSAEVNLKDL--------NNV 743
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAWNRLRAGDNTE 778
M AGSKG+ + + Q S C+G Q ++F F PH D +
Sbjct: 744 KQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPH---------FSKDDYSP 794
Query: 779 CAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLC 836
+K + VENS+L GL P E F H++ R+ G + RRL+ + D+
Sbjct: 795 ESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIM 849
Query: 837 TAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLL 896
YDGT RN+ GN ++QF Y +G I Q + ++++ S+AA+ + I LL
Sbjct: 850 VHYDGTTRNSLGN-VIQFIYGEDGMD--AAHIEKQTIDTIAS---SDAAFERRFR-IDLL 902
Query: 897 ETSPLLNLKNVLECGSK 913
L+ ++LE GS+
Sbjct: 903 NPRHALD-PSLLESGSE 918
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 231/960 (24%), Positives = 397/960 (41%), Gaps = 208/960 (21%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + T+ C +C +
Sbjct: 19 VQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRTSRCLTCSG-NMT 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG ++ + H FL+ K+L +C VC YC
Sbjct: 78 ECPGHFGHLELAKPVFHVGFLTKTLKVL-----RC--------------------VCYYC 112
Query: 128 VR---NPAQWYPRMRFKLSSKDLSGKTAIIVEIDE-------------------KLSKKN 165
R +P +PRMR LS + + + ++ E + +++
Sbjct: 113 SRLLVSPN--HPRMREILSKTKTTQRQQRLDKVYEICKTKSMCEESDTSDKGQGEPTEEE 170
Query: 166 KKL---------PDDYWGFIPFDAQ----QEENSVKPNRKVLSCKQVSYLLKDVDPSIRE 212
+K+ P+ + A+ EEN K ++VL+ ++V + K + S E
Sbjct: 171 RKMMHVGCGRYQPNYRRSGLDISAEWKHTNEENQEK--KQVLTAERVYEIFKHI--SEEE 226
Query: 213 EFILSKDAPF-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG 265
F L D + L V P R V + + D+ T L +V
Sbjct: 227 CFCLGMDERYAKPSWMVLTVLAVPPLCVRPAVVMFGSARNQ----DDLTHKLSDIVKANN 282
Query: 266 RDIE------LSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLR 311
I H++ + +K+ + H L R R K+I +
Sbjct: 283 ELIRNEQSGAAPHILAENVKMLQFHVATLYDNELPGLPRAMQKSGRPLKSIKQRLKAKEG 342
Query: 312 WIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISF 371
I+ ++GKR D R V+T DPN+K+ E+G+P +A+ L E + +N ER+ +S
Sbjct: 343 RIRGNLMGKRVDFSARTVITPDPNLKINEVGVPRSIAQNLTFPEIVTPFNIERMQELVSR 402
Query: 372 RLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G Y+ R+ G RID L+ G + R + +GDI++ NR P++
Sbjct: 403 GNNQYPGAKYIVRENG----ERIDLRFHPKASDLHLQCGYRVERHVQNGDIIVFNRQPTL 458
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ ++VLP S+ +N +P++ DFDGD ++ ++PQ++ R E+ +L + +
Sbjct: 459 HKMSMMGHKIRVLPWSTF-RMNLSVTTPYNADFDGDEMNMHVPQSLETRAEIEQLAMVPR 517
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKIS 537
Q+I Q+ + ++ + QD+LTA + + V L QM L MF P + P I K
Sbjct: 518 QIITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLLMFLPIWNGKVPIPAILK-- 575
Query: 538 KDSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA--- 575
+W+ KQLFS+++P PD E P K V I G+L+S
Sbjct: 576 PKPLWTAKQLFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVIIEHGQLLSGIVC 635
Query: 576 ---EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLAS 631
G+S G+L L +V Y+ Q V+ WL G ++ + D
Sbjct: 636 KKTVGAS-----AGSLMHVLFVEMGHEVAGAFYSHLQTVVNAWLLYEGHSIGIGDTI--- 687
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYE 688
++ MD I +++A+ + +++ +H + L + ++ + + L+
Sbjct: 688 --ADQQTYMD-IQNTIKKAKQ--DVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDA 742
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ ++ +Q S+ F N+ +M +G+KG+ + + Q C+G
Sbjct: 743 RDKTGGSAQKSLSEF------------------NNFKSMVVSGAKGSKINISQVIACVGQ 784
Query: 749 QH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLEC 802
Q+ P FR PH + R VENS+L GL P E
Sbjct: 785 QNVEGKRIPFGFRKRTLPHFIKDDFGPESR--------------GFVENSYLAGLTPSEF 830
Query: 803 FIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
F H++ R+ G + RRL+ M + YDGTVRN+ G Q++QF Y +G
Sbjct: 831 FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMICYDGTVRNSNG-QVIQFRYGEDG 889
>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
Length = 1260
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 235/930 (25%), Positives = 382/930 (41%), Gaps = 156/930 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
++ I + + E K SV EI A + + RLG P +C +CG
Sbjct: 9 ISAIRFSVWSPHEIRKYSVAEITAPETYDEEGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSI---CPKCKTIRKE-------RQKGAGS 115
+ C GHFG I+ ILH F+ +I KLL + C + K ++E R++ +
Sbjct: 69 AR-CPGHFGHIELAEPILHIAFIDNIHKLLLGMCRSCSRLKVPQEELDSLSKIRRRESAY 127
Query: 116 SRKEQPRV-------------CKYCVRNPAQW-YPRMRFKLSSKDLSGKTAIIVEIDEKL 161
+ Q R+ C +C + + + + + ++ + + I EK
Sbjct: 128 TVISQKRIPEQILDRAKKSKECPHCGKTQYELIFTKPTIFIEKTEIGENRLLPITIREKF 187
Query: 162 SK-KNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REEFILSKD 219
S+ N+ L G+ P A +P +L V + V PSI E I S+D
Sbjct: 188 SQITNEDLV--LLGYDPATA-------RPEWFILQALPVPPVT--VRPSIILETGIRSED 236
Query: 220 APFLKCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGR 266
K + N R+ E A + +FDN + + GR
Sbjct: 237 DLTHKMVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHATTYFDNEISGIPQAHHRSGR 296
Query: 267 DIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCF 326
L L Q R E R + ++ GKR D
Sbjct: 297 --PLKTLTQ--------------RLKGKEGRFRGSLS---------------GKRVDFSS 325
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKG 385
R V++ DPN+ L E+G+P VA +L I E + WN R+ + ++ G Y+ R
Sbjct: 326 RTVISPDPNLDLSEVGVPESVAMKLTIPEIVTEWNIARMKELVVNGPDHYPGVNYIVRPD 385
Query: 386 GLVRIRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
G V+IR D LE+G +I R L DGDIV+ NR PS+H S++A V+VLP
Sbjct: 386 G-VKIRLDFVEDRSTIADTLEMGYLIERHLLDGDIVMFNRQPSLHQMSIMAHHVRVLP-G 443
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
++P C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G ++ +
Sbjct: 444 KTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQDQLISPRYGGPIIGGLR 503
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDF 556
D +T ++LL +D L+ + L M + P +K +++GKQLFS+ LP DF
Sbjct: 504 DFITGSYLLTKDDTTLTREEFTNLAMLGDYGGALPK--PGAKGQLFTGKQLFSLFLPKDF 561
Query: 557 EYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRDK-VLDF 603
Y S KDV I G+LIS + SS + ++ + K Y + F
Sbjct: 562 NYIITSKWSKGTKGTPKDVVIKNGELISGVIDKSSIGAEEPESVLHRIAKDYGNAPAKKF 621
Query: 604 LYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS 663
L + + ++++ G + +DL L +RK + D+I D
Sbjct: 622 LNSVLIIAKQFITHYGFSYGYADLELPEK--ARKEIFDDIGASY--------------DK 665
Query: 664 HMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNS 723
++ AK G L+ AL V +A + N+
Sbjct: 666 VYGYIADAKKG-------GLRLTRGLSPDEALEAYIVSELSRARDTAGGIADQSFDHTNA 718
Query: 724 LLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY 783
M G++G+ L + Q + LG Q R + A R D++ A +
Sbjct: 719 GKIMASTGARGSSLNIGQMAGSLGQQSRRGQ---RLLKGYNNRALPHFRENDDSPDAHGF 775
Query: 784 IPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYD 840
V++++ GL+ LE F H++ R+ D A G + RRL+ + + YD
Sbjct: 776 -----VKSNYRDGLSALEFFFHAMAGRE-GLVDTAVRTQQSGYMQRRLINALEHIRLEYD 829
Query: 841 GTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
TVR+ +G+ I+QF Y +G + G+
Sbjct: 830 NTVRDPHGH-IIQFLYGEDGIDVAKSDHGE 858
>gi|119719203|ref|YP_919698.1| DNA-directed RNA polymerase subunit A' [Thermofilum pendens Hrk 5]
gi|119524323|gb|ABL77695.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
Length = 888
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 221/912 (24%), Positives = 381/912 (41%), Gaps = 135/912 (14%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSEVTNP------------RLGLPNPTNECSSCGA 63
I+ GI GI + K++V+ I SE+ + R+G P C +CG
Sbjct: 9 IVAGIKFGILSPEMIRKIAVLRI-ETSELYDEEGFPIPGGLMDRRMGSIEPGAVCQTCGN 67
Query: 64 KDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRV 123
+ C GHFG+I+ ++HP F IA LL + C +C ++ +K K + R+
Sbjct: 68 RFTN-CPGHFGYIELARPVIHPSFAPYIAILLKATCNRCGRLKLPEEK----INKAKKRM 122
Query: 124 CKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQE 183
Y A+W P ++ K ++ L V + +L Y F ++E
Sbjct: 123 EVYS----AKW-PSLKTKYANTLLKEAAKATVCPHCGAPQYKIRLDKPYT----FYEERE 173
Query: 184 ENSVKPN-----RKVLSCKQVSYLLKDVDP-SIREEFILSKDAPFLKCFPVTPNNHRVTE 237
E VK ++ + + +DP R E+++ L+ PV P + R
Sbjct: 174 EGLVKLTPLEIWERLSRIPEGDLRVVGIDPKEARPEWMV------LRVIPVVPPSVR--- 224
Query: 238 VPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCLKISKLHLDKSSRK 291
P D+ T L ++ R E S +++D + + H+
Sbjct: 225 -PSITLESGDRSEDDLTHKLVDIIRVNQRLKENIDAGSPSLVIEDLWNLLQFHVATYFDN 283
Query: 292 DSAEVRQKKNIDISNSSGLRWIKDVVLGK-----------RNDDCFRMVVTGDPNIKLKE 340
+ + ++ + LR + + GK R D R V++ DPN+ + E
Sbjct: 284 ELPGIPPARH---RSGRPLRTLAQRLKGKEGRFRGSLAGKRVDFSSRTVISPDPNLSINE 340
Query: 341 IGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRK-GGLVRIRRI----- 393
+G+P VA+ L + E++ WN E+L + I+ + G Y+ + G + +R +
Sbjct: 341 VGVPIDVAKVLTVPEKVTPWNIEKLRKLVINGPDVWPGANYIIKPDGSRIDLRYVKHREE 400
Query: 394 --DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHG 451
L+ G I+ R L DGD+VL NR PS+H S++A VKVLP + +N L P++
Sbjct: 401 ISQTLKPGYIVERHLMDGDVVLFNRQPSLHRISIMAHIVKVLPYKT-FRLNLLVTIPYNA 459
Query: 452 DFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVL 511
DFDGD ++ ++PQ+ AR E EL+ + + ++ + G ++ D ++ ++LL L
Sbjct: 460 DFDGDEMNLHVPQSEEARAEARELMLVQEHIMTPRYGAPIIGGLHDYISGSYLLTRKDAL 519
Query: 512 L---SHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPP-------------- 554
L S L++ + C + P I K W+GKQ+ SM LP
Sbjct: 520 LDKKSALRLLYIGNNC-DPLVEPAIIK--PGPYWTGKQIVSMFLPKGLNYVGRASVAPAS 576
Query: 555 ---DFEYTFPSKDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQ 608
D EY V I GKL+ + + + G + +++ + +K + +
Sbjct: 577 GKCDEEYCENDGYVLIKDGKLLLGVFDKQAIGAEKHGTVLHEIVREFGVEKAKELMDGMF 636
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFL 668
+V +L + G T+ + + + REA+D + + L
Sbjct: 637 KVFIAYLDMHGFTMGVDSVEIP-----------------REAEDDIREILQEAEKKVEDL 679
Query: 669 MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMF 728
+ +S + + G K R L ++ + K+ N + M
Sbjct: 680 IRQYESGELQPMPG------KTRKETLEDLIMNVLAEARTRAGEVTSKHLGLLNHAVIMA 733
Query: 729 KAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAV 788
K G++G++L L Q + +G Q R + A GD + AK ++ S
Sbjct: 734 KTGARGSMLNLTQMAAVVGQQSVRGK---RIERGYTGRALPHFVKGDLSPLAKGFVYS-- 788
Query: 789 VENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRN 845
SF GL+P+E F H+++ R+ D A G + RRL M+D +YDGTVRN
Sbjct: 789 ---SFRRGLSPVEFFFHAISGRE-GLVDTAVRTAQSGYMYRRLQSAMQDFYVSYDGTVRN 844
Query: 846 AYGNQIVQFSYN 857
+ G I+QF Y
Sbjct: 845 SEG-MIIQFRYG 855
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 217/922 (23%), Positives = 373/922 (40%), Gaps = 153/922 (16%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PR G+ + + C +C A + C GHFG I+ + H F+ K+L +C C
Sbjct: 32 LMDPRQGVMDRNSRCQTC-AGNMTECPGHFGHIELAKPVFHVGFIKQTIKILRCVCFYCS 90
Query: 104 TIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSK 163
+ P++ + ++ Q PR R GK + L+K
Sbjct: 91 KML---------VSPTNPKIKEIVMKTKGQ--PRKRLTFVYDLCKGKNICEGGDEMDLAK 139
Query: 164 KNKKLPDDYWGFIPFDAQQEENSVKPN----------------------RKVLSCKQVSY 201
+ PDD G +PN + LS ++V
Sbjct: 140 DPDRNPDDPGGQSKKQGHGGCGRYQPNIRRSGLDLSAEWKHANEDTQEKKIALSAERVYE 199
Query: 202 LLKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWT 254
+ K + S E FI+ D + + PV P + R V + + + D+ T
Sbjct: 200 IFKHI--SDEECFIMGMDPKYARPDWMIATVLPVPPLSVRPAVVMYGSARNQ----DDLT 253
Query: 255 RHLKKMVDYRGRDIE------LSHLVQDCLKISKLHLDKSSRKDSA---EVRQK-----K 300
L ++ +H++ + K+ + H+ D QK K
Sbjct: 254 HKLADIIKANNELARNEMAGAAAHVLCENTKMLQFHVATLVDNDMPGMPRAMQKSGKPLK 313
Query: 301 NIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSW 360
I I+ ++GKR D R V+T DPN+ + ++G+P +A+ L E + +
Sbjct: 314 AIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLHIDQVGVPRSIAQNLTFPEIVTPF 373
Query: 361 NWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDG 409
N E + + + G Y+ R G RID L+ G + R + DG
Sbjct: 374 NLEHMQDLVRRGNSQYPGAKYIVRDNG----ERIDLRYHPKPSDLHLQCGYRVERHIRDG 429
Query: 410 DIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGAR 469
D+V+ NR P++H S++ VKVLP S+ +N SP++ DFDGD ++ ++PQ++ R
Sbjct: 430 DLVIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMETR 488
Query: 470 VELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---H 526
E+ + +Q+I Q+ + ++ + QD+LTA + V + QM L +F P
Sbjct: 489 AEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTRRDVFIEKEQMMNLLLFLPIWDG 548
Query: 527 RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLIS 574
+ P I K +W+GKQ+FS+++P PD E + P + K++
Sbjct: 549 KMPQPAILK--PKPLWTGKQIFSLIIPGNVNMIRTHSTHPDDENSGPYNWISPGDTKVMV 606
Query: 575 AEGS--------SWLRDYEGNLFQY-LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLS 625
G L G+L +++ ++ F Q V+ WL + G ++ +
Sbjct: 607 EHGELVMGILCKKTLGTSAGSLLHICMLELGHEECGRFYGNIQTVVNNWLLLEGHSIGIG 666
Query: 626 DLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
D + EI +++A++ + +++ +H N + + R
Sbjct: 667 DTIADPQTYI------EIQKAIKKAKE--DVIEVIQKAH-NMDLEPTPGNTLRQ------ 711
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
++E Q + L+ A A K ++ N+L AM AGSKG+ + + Q C
Sbjct: 712 TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIAC 763
Query: 746 LGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGL 797
+G Q+ P FR PH + Y P + VENS+L GL
Sbjct: 764 VGQQNVEGKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGL 807
Query: 798 NPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E + H++ R+ G + RRL+ M + YDGTVRN+ G Q++Q
Sbjct: 808 TPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLR 866
Query: 856 YNIEGTSTPTGEIGDQPVGSLS 877
Y +G T E + P L+
Sbjct: 867 YGEDGLCGETVEFQNLPTIKLA 888
>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
Length = 880
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 234/928 (25%), Positives = 384/928 (41%), Gaps = 161/928 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG-NT 64
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR----------------KER 109
C GHFG I+ ++H F+ + + L + C +C ++ K+R
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 110 QKGAGSSRKE-------QPRVCKYC--------VRNPAQWYPRMRFKLSSKDLSGKTAII 154
A E + +VC +C + P +Y + ++ S
Sbjct: 125 WPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPS------ 178
Query: 155 VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EE 213
+I E+L +K+P+ + +D + +P +L+ V + + PSI E
Sbjct: 179 -DIRERL----EKVPESDVEILGYDP----TTSRPEWMILTVLPVPPIT--IRPSIMIES 227
Query: 214 FILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHL 273
I ++D K + N R+ E A + + + D W + Y +I
Sbjct: 228 GIRAEDDLTHKLVDIVRINERLKESIDAGA-PQLIIEDLWDLLQYHVATYFDNEIP---- 282
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
L SK + R + ++ K+ N SG KR D R V++ D
Sbjct: 283 ---GLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPD 329
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRR 392
PNI + E+G+P +A L + ER+ WN E+L I+ G YV R G RR
Sbjct: 330 PNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG----RR 385
Query: 393 ID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
ID L G ++ R LTDGD+VL NR PS+H S++A V+VL
Sbjct: 386 IDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFR 444
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N L C P++ DFDGD ++ ++PQ+ A E E++ + K +I + G ++ QD ++
Sbjct: 445 LNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYIS 504
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A+LL + LL+ + QQ+ + + ++ ++GKQ+ S LP DF +
Sbjct: 505 GAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQIVSAFLPKDFNFHG 564
Query: 561 PSK---------------DVYISGGKLISAEGSSWLRDYEGN-----LFQYLIKRYRDK- 599
+ D Y+ I EG + + GN + +LIK Y D+
Sbjct: 565 QANVSSGPRLCKNEDCPHDSYVVIKNGILLEG-VFDKKAIGNQQPESILHWLIKEYSDEY 623
Query: 600 ---VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
++D L+ V ++ ++G T+ L D+ L + EI+ + A+ N
Sbjct: 624 GKWLMDNLF---RVFIRFVELQGFTMRLEDVSLGDD------VKQEIYNEIDRAKVEVN- 673
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
N + K+ E + G L +L +D + ++A K
Sbjct: 674 ---------NLIQKYKNGE-LEPIPGRTL------EESLENYILDTLDKLRSTAGDIASK 717
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
Y N M + G++G++L + Q + LG Q R + D
Sbjct: 718 YLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDI 774
Query: 777 TECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMR 833
+ A+ +I S SF TGL P E F H+ R+ D A G + RRL+ +
Sbjct: 775 SPEARGFIYS-----SFRTGLKPTELFFHAAGGRE-GLVDTAVRTSQSGYMQRRLINALS 828
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
DL YDGTVR+ YG +++Q +Y +G
Sbjct: 829 DLRAEYDGTVRSLYG-EVIQVAYGDDGV 855
>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
Length = 880
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 234/928 (25%), Positives = 384/928 (41%), Gaps = 161/928 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG-NT 64
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR----------------KER 109
C GHFG I+ ++H F+ + + L + C +C ++ K+R
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 110 QKGAGSSRKE-------QPRVCKYC--------VRNPAQWYPRMRFKLSSKDLSGKTAII 154
A E + +VC +C + P +Y + ++ S
Sbjct: 125 WPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPS------ 178
Query: 155 VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EE 213
+I E+L +K+P+ + +D + +P +L+ V + + PSI E
Sbjct: 179 -DIRERL----EKVPESDVEILGYDP----TTSRPEWMILTVLPVPPIT--IRPSIMIES 227
Query: 214 FILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHL 273
I ++D K + N R+ E A + + + D W + Y +I
Sbjct: 228 GIRAEDDLTHKLVDIVRINERLKESIDAGA-PQLIIEDLWDLLQYHVATYFDNEIP---- 282
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
L SK + R + ++ K+ N SG KR D R V++ D
Sbjct: 283 ---GLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPD 329
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRR 392
PNI + E+G+P +A L + ER+ WN E+L I+ G YV R G RR
Sbjct: 330 PNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG----RR 385
Query: 393 ID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
ID L G ++ R LTDGD+VL NR PS+H S++A V+VL
Sbjct: 386 IDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFR 444
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N L C P++ DFDGD ++ ++PQ+ A E E++ + K +I + G ++ QD ++
Sbjct: 445 LNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYIS 504
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A+LL + LL+ + QQ+ + + ++ ++GKQ+ S LP DF +
Sbjct: 505 GAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQIVSAFLPKDFNFHG 564
Query: 561 PSK---------------DVYISGGKLISAEGSSWLRDYEGN-----LFQYLIKRYRDK- 599
+ D Y+ I EG + + GN + +LIK Y D+
Sbjct: 565 QANVSSGPRLCKNEDCPHDSYVVIKNGILLEG-VFDKKAIGNQQPESILHWLIKEYSDEY 623
Query: 600 ---VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
++D L+ V ++ ++G T+ L D+ L + EI+ + A+ N
Sbjct: 624 GKWLMDNLF---RVFIRFVELQGFTMRLEDVSLGDD------VKKEIYNEIDRAKVEVN- 673
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
N + K+ E + G L +L +D + ++A K
Sbjct: 674 ---------NLIQKYKNGE-LEPIPGRTL------EESLENYILDTLDKLRSTAGDIASK 717
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
Y N M + G++G++L + Q + LG Q R + D
Sbjct: 718 YLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDI 774
Query: 777 TECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMR 833
+ A+ +I S SF TGL P E F H+ R+ D A G + RRL+ +
Sbjct: 775 SPEARGFIYS-----SFRTGLKPTELFFHAAGGRE-GLVDTAVRTSQSGYMQRRLINALS 828
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
DL YDGTVR+ YG +++Q +Y +G
Sbjct: 829 DLRAEYDGTVRSLYG-EVIQVAYGDDGV 855
>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
Length = 880
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 234/928 (25%), Positives = 384/928 (41%), Gaps = 161/928 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG-NT 64
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR----------------KER 109
C GHFG I+ ++H F+ + + L + C +C ++ K+R
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 110 QKGAGSSRKE-------QPRVCKYC--------VRNPAQWYPRMRFKLSSKDLSGKTAII 154
A E + +VC +C + P +Y + ++ S
Sbjct: 125 WPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPS------ 178
Query: 155 VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EE 213
+I E+L +K+P+ + +D + +P +L+ V + + PSI E
Sbjct: 179 -DIRERL----EKVPESDVEILGYDP----TTSRPEWMILTVLPVPPIT--IRPSIMIES 227
Query: 214 FILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHL 273
I ++D K + N R+ E A + + + D W + Y +I
Sbjct: 228 GIRAEDDLTHKLVDIVRINERLKESIDAGA-PQLIIEDLWDLLQYHVATYFDNEIP---- 282
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
L SK + R + ++ K+ N SG KR D R V++ D
Sbjct: 283 ---GLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPD 329
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRR 392
PNI + E+G+P +A L + ER+ WN E+L I+ G YV R G RR
Sbjct: 330 PNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG----RR 385
Query: 393 ID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
ID L G ++ R LTDGD+VL NR PS+H S++A V+VL
Sbjct: 386 IDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFR 444
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N L C P++ DFDGD ++ ++PQ+ A E E++ + K +I + G ++ QD ++
Sbjct: 445 LNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYIS 504
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A+LL + LL+ + QQ+ + + ++ ++GKQ+ S LP DF +
Sbjct: 505 GAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQIVSAFLPKDFNFHG 564
Query: 561 PSK---------------DVYISGGKLISAEGSSWLRDYEGN-----LFQYLIKRYRDK- 599
+ D Y+ I EG + + GN + +LIK Y D+
Sbjct: 565 QANVSSGPRLCKNEDCPHDSYVVIKNGILLEG-VFDKKAIGNQQPESILHWLIKEYSDEY 623
Query: 600 ---VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
++D L+ V ++ ++G T+ L D+ L + EI+ + A+ N
Sbjct: 624 GKWLMDNLF---RVFIRFVELQGFTMRLEDVSLGDD------VKKEIYNEIDRAKVEVN- 673
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
N + K+ E + G L +L +D + ++A K
Sbjct: 674 ---------NLIQKYKNGE-LEPIPGRTL------EESLENYILDTLDKLRSTAGDIASK 717
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
Y N M + G++G++L + Q + LG Q R + D
Sbjct: 718 YLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDI 774
Query: 777 TECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMR 833
+ A+ +I S SF TGL P E F H+ R+ D A G + RRL+ +
Sbjct: 775 SPEARGFIYS-----SFRTGLKPTELFFHAAGGRE-GLVDTAVRTSQSGYMQRRLINALS 828
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
DL YDGTVR+ YG +++Q +Y +G
Sbjct: 829 DLRAEYDGTVRSLYG-EVIQVAYGDDGV 855
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 167/578 (28%), Positives = 273/578 (47%), Gaps = 80/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N E L + +
Sbjct: 353 LMGKRVDFSARTVITGDPNLELDEVGVPKSIAMTLTYPERVTPYNIEYLQELVRNGPTTY 412
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R L +R D L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 413 PGARYVVRDTNERIDLRYNKRADTFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 472
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 473 RLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 531
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFS 549
++ + QD+L L Q+Q + ++ P S I I K +WSGKQ+ S
Sbjct: 532 VMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPIPAIIKPKPMWSGKQILS 591
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQYLI 593
M +P PD + P D + I G++I G+S +G L +
Sbjct: 592 MAIPRGINIHRSPDPKSANPVFDDGMLIENGEIIFGIVDKKTVGAS-----QGGLVHVVF 646
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ + L+ Q V+ WL G ++ + D + + + M I + E +
Sbjct: 647 REKGPEATRTLFTGLQTVVNYWLFHNGFSIGIGD------TIADRKTMAYITQQITERKQ 700
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDI 710
N QQ++ D+ + L +S+ G + S+E + L+ A D+ K+
Sbjct: 701 --NVQQIIEDATHDRL---------KSMPGMTIRESFESKVERELNLARDDSGKY----- 744
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELS 764
A K +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 745 ---AQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPH--- 798
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 799 ------FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 847
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 YIQRRLVKALEDVMVNYDGTVRNSLGD-LIQFVYGEDG 884
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA----VSEVTNPRLGLPNPTNECSSCGAKDR 66
EV GIL+ + + + E VM+ + + +PR+G + +C +CG +
Sbjct: 18 EVQFGILSPEEIKAYSVAKVEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCG-EGM 76
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + HP F+ + K+L SIC C ++ +
Sbjct: 77 SECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKAD 118
Score = 40.4 bits (93), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
MD +D+TR++ ++ GI+A + L I G + HL ++ + ++
Sbjct: 1337 MDGVDFTRTYSNSCVEIFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTQR 1396
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + + G+ + + + +++ F ++AA G D+ G + + +G++
Sbjct: 1397 GHLMAITRHGI-----NRADTGALMRSSFEETVEILMEAAAVGERDDCHGIAENVMFGQM 1451
Query: 1249 PSVGTGG 1255
+GTG
Sbjct: 1452 APMGTGA 1458
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 218/949 (22%), Positives = 394/949 (41%), Gaps = 169/949 (17%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSS 60
P ++ + G+ + E +++SV E G + + +PR G+ + C +
Sbjct: 12 PLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQT 71
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKE 108
C A + C GHFG I+ + H F++ I K+L +C PK K I
Sbjct: 72 C-AGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILT- 129
Query: 109 RQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLS-----SKDLSGKTAI--IVEIDEK 160
K G RK V C +N + M K S+D++ + +
Sbjct: 130 --KSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPR 187
Query: 161 LSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
+ + +L + W + D+Q++ + +LS ++V + K + + E+ IL D
Sbjct: 188 IRRSGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--ADEEDIILGMDP 237
Query: 221 PFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------D 267
+ + PV P R V + + D+ T L +V +
Sbjct: 238 KYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLKRNEQS 293
Query: 268 IELSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLG 319
+H++ + +K+ + H L R R K+I ++ ++G
Sbjct: 294 GAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMG 353
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGE 378
KR D R V+T DPN+++ ++G+P +A + E + +N +RL + + G
Sbjct: 354 KRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA 413
Query: 379 LYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G RID L++G + R + DGDI++ NR P++H S++
Sbjct: 414 KYIIRDNG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGH 469
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS
Sbjct: 470 RVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSN 528
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGK 545
R ++ + QD+LTA + V L ++ L MF + P I K +W+GK
Sbjct: 529 RPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGK 586
Query: 546 QLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYE 585
Q+FS+++P PD E + P K++ K+I G L
Sbjct: 587 QIFSLIIPGHINAIRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSA 646
Query: 586 GNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G+L + Y+ Q V+ WL + G ++ + D S + K +I
Sbjct: 647 GSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGD------SIADKATYQDIQ 700
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVD 701
+++A+ + +++ +H N L + ++ + + L+ + ++ + +Q S+
Sbjct: 701 NTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 758
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
+ N+ +M AGSKG+ + + Q +G Q+ P F+
Sbjct: 759 EY------------------NNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFK 800
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 801 HRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGL 844
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 845 IDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 892
>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
Length = 1022
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 165/584 (28%), Positives = 270/584 (46%), Gaps = 80/584 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L E + +N E+L + E
Sbjct: 282 LMGKRVDFSARTVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTEH 341
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L +G + R + DGD+V+ NR PS+H S+
Sbjct: 342 PGAKYVIRDTG----ERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNRQPSLHKMSM 397
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+VLP S+ +N SP++ DFDGD ++ ++PQ+ +R E+ E+ + +Q+I+
Sbjct: 398 MGHRVRVLPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICMVPRQIISP 456
Query: 486 QSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
Q+ ++ + QD+L A D+ + L M L P I +W+G
Sbjct: 457 QANSPVMGIVQDTLCAIRKFTRRDNFMAKDLVMNILMHIPDWDGTVPTPAIIKPKPLWTG 516
Query: 545 KQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISAEGSSWLRDY-EGNL 588
KQ++S+ +P PD E TF S V I G+L++ D EG+L
Sbjct: 517 KQIYSLAIPKGINCLRFHSTHPDNETTFVSPGDTRVIIEDGELLAGIICKKTVDASEGSL 576
Query: 589 FQYLI-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
++ +R + F Q ++ W G ++ + D + + M + +
Sbjct: 577 VHVVMAERGPEVAKKFFNTTQRIVDYWFLQNGFSIGIGD------TIADDDTMLNVSNII 630
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
+EA D + Q+++D+ + M A + R S+E + + L++A A K
Sbjct: 631 KEAYDRVD--QIIIDAQED-RMEAMPGMTYRE------SFENRVNKELNRARDQAGK--- 678
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PH 761
L + + N++ M AGSKG+ + + Q + +G Q+ P FR+ PH
Sbjct: 679 -----LVQQRLKESNNVRQMVVAGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRYRTLPH 733
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 734 ---------FAKDDYSPASKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 779
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G + RRL+ + DL YDG+VRN+ G QIVQF+Y +G +
Sbjct: 780 ETGYIQRRLIKALEDLMVQYDGSVRNSLG-QIVQFTYGEDGMDS 822
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 168/596 (28%), Positives = 273/596 (45%), Gaps = 77/596 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+TGDPNI + E+G+P +A L E + +N +++ I
Sbjct: 265 IRGNLMGKRVDFSARTVITGDPNISIDEVGVPRSIALNLTYPELVTPFNIDKMYELIRNG 324
Query: 373 LLEK-GELYVCRKGGL---VRIRRIDA---LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G +R R + LE G + R + DGD+++ NR PS+H S+
Sbjct: 325 PTEHPGAKYIIRDDGQRLDLRFARKASDLHLEYGYKVERHIQDGDVIIFNRQPSLHKMSM 384
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VK++P S+ +N +P++ DFDGD ++ ++PQ GAR E+ EL+ + KQ++
Sbjct: 385 MGHKVKIMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQTPGARAEVIELMMVPKQIVTA 443
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L LL + + M + M+ +P I K + +W
Sbjct: 444 QSNKPVIGIVQDTLLGGCLLTQRDTFIEKDVMMNILMWLESWDGTVPTPTILKPKQ--LW 501
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISA-EGSSWLRDYEGNLF 589
+GKQ+FS+++P PD +T V I G+L+S L +L
Sbjct: 502 TGKQVFSLIIPRNTNFVNADDEEPDMSFT--DNKVLIEEGELVSGILNKKTLGTSHKSLV 559
Query: 590 QYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V FL Q V+ WL G +V + D + ++ I +R
Sbjct: 560 HVIWNEHGSEVCKHFLNQVQHVVNYWLLHHGFSVGVGDTIADEETLAK------ITQTIR 613
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A+D +QL + + R++ S+E + L++A DA
Sbjct: 614 KAKDEVKERQLEAQQ------GQLERQPGRTMME---SFEFVINQILNKARDDA------ 658
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
N A K + N+ AM AGSKG+ + + Q C+G Q+ P FR PH
Sbjct: 659 --GNSAQKSLRRSNNFKAMVIAGSKGSAINISQVLACVGQQNVEGKRIPFCFRDRTLPHF 716
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
+ R VENS+L GL P E F H++ R+
Sbjct: 717 VKDDFGPESR--------------GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 762
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSL 876
G + RRL+ + D+ YD TVRN+ G+ ++QF Y +G T E QP+ +L
Sbjct: 763 TGYIQRRLVKALEDVMVKYDYTVRNSLGD-VIQFLYGEDGMDGQTVET--QPLDAL 815
Score = 45.4 bits (106), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 115/294 (39%), Gaps = 47/294 (15%)
Query: 972 HFSPWICHFHVRKEIMKRTGLKEHSI-----------IDSLYRQCKAARTELKISVPDML 1020
+ SPW+ + +E M T L I ++ +Y A + L+I
Sbjct: 1115 NLSPWLLRIELNREKMTDTKLSMQEIAERIHADFGGDLNCIYNDDNADKLILRIR----- 1169
Query: 1021 ISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKK 1080
I+N + + Q+ V + +E+ T +DL KG IKK
Sbjct: 1170 INNDEENKAPDQEGSVGDDDVFLKQIESNMLTEMDL----------------KGIEGIKK 1213
Query: 1081 VDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPD 1140
V + +DK K + D+ GE + T+L + + + +D TR+ +
Sbjct: 1214 V-FIREDKNKVAI---DARGEYTKANELVLDTEGTNLLAVMSHPD------VDHTRTTSN 1263
Query: 1141 NIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLA 1200
NI GI+A L L + IS G + HL I+A+ ++ G + + G+
Sbjct: 1264 NIIETIEVLGIEAVRNALLRELRNVISFDGAYVNYRHLAILADVMTYRGHLMAITRHGI- 1322
Query: 1201 LQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
+ + ++ F ++AA +D L G + + G++P +GTG
Sbjct: 1323 ----NRVETGCLMRCSFEETADILLEAATFSELDPLSGVSENILLGQLPPLGTG 1372
>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
Length = 993
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 175/697 (25%), Positives = 313/697 (44%), Gaps = 84/697 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L +
Sbjct: 251 VRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNG 310
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R GG RID L+ G + R + DGD ++ NR PS+H
Sbjct: 311 PNEHPGARYVIRDGG----ERIDLRFHRRAGDLVLQYGWKVERHIVDGDFIIFNRQPSLH 366
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L +
Sbjct: 367 KESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLN 425
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V L+H Q+ + ++ P + P +
Sbjct: 426 IVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNHEQVMNILLWVPEWDGIIPQPAVLKPKP 485
Query: 541 VWSGKQLFSMLLPPDFEYT-----FPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYL 592
+W+GKQ+ S+++P P KD ++++GG+L+ + G + +
Sbjct: 486 LWTGKQIVSLVIPSGLNLVKGSDYAPLKDEGIFVAGGELMFGLLNKKVVGAAMGGIIHIV 545
Query: 593 I-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + ++F AQ V+ WL G ++ + D + L++E + Q
Sbjct: 546 YNEKGSEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETIR---LIEEAVN--TQKQ 600
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ Q+ +S ++ L E ++E + S AL++A DA ++
Sbjct: 601 EVTEITQMATESRLDTLPGMNVRE----------TFESRVSKALNKARDDAGTVTEDSLK 650
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 651 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 698
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 699 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 748
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
+ RRL+ + D+ YDGT+RN+ G+ IVQF Y +G I Q L SE
Sbjct: 749 IQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLD--GAHIEPQ---KLDIIVCSE 802
Query: 884 AAYSALDQPISLLETSPLLNLK-NVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALE 942
A + D + L++ +P + + LE + + DQ + L + + + E+
Sbjct: 803 AKFEK-DFRVDLMDNNPRTTISPDFLEQATVIA-TDQKVQKALDEEYEQLKAAREFLRKN 860
Query: 943 VKNHLECLML----SDIVSTSMIIYSPQTGSMKHFSP 975
K+ E L L I+ T+M ++ + GS + P
Sbjct: 861 KKDASEDLQLPLNIPRILETAMTTFNIKNGSRSNLDP 897
>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita
phalloides]
Length = 1007
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 168/581 (28%), Positives = 268/581 (46%), Gaps = 86/581 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 269 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIGYLQELVRNGPTAY 328
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 329 PGARYVVRDTGERIDLRYNKRADAHLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 388
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 389 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKP 447
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFS 549
++ + QD+L L L Q+Q + ++ P S I I K +WSGKQ+ S
Sbjct: 448 VMGIVQDTLCGIRKLTLRDTFLDWNQVQNILLWVPDWDGSVPIPAILKPKPLWSGKQILS 507
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQYLI 593
M +P PD + + P D + I G++I G+S +G L +
Sbjct: 508 MTIPRGINIHRSPDPKSSNPVFDDGMMIENGEIIFGIVEKKTVGAS-----QGGLVHVVF 562
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSD--LYLASHSCSRKILMDEIFYGLREA 650
+ + L Q V+ WL G ++ + D + L + + RK + D
Sbjct: 563 REKGPEATRMLLTGIQMVVNYWLFHNGFSIGIGDTIVDLPTMAYIRKSIQDR-------- 614
Query: 651 QDTCNFQQLMVDS---HMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
N +L+ D+ H+ ES S+ L+ + RS +Q
Sbjct: 615 --KSNVAKLIEDAIHDHLKAKPGMTLRESFESMAERELNLARDRSGKYAQ---------- 662
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPH 761
++ +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 663 --------EHMKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRSLPH 714
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D A+ + VENS+L GL P E F H++ R+
Sbjct: 715 ---------FTKDDFGPDARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 760
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 761 ETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFIYGEDG 800
>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
Length = 1016
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 210/855 (24%), Positives = 366/855 (42%), Gaps = 113/855 (13%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGA--GSSRKEQP----- 121
C GHFG I+ + H F++ I KLL ++C C I + A + R P
Sbjct: 2 CPGHFGHIELAAPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFADAQRYRDPKRRFD 61
Query: 122 ---RVCK---YCVRNPAQW--YPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYW 173
R+CK C PA P K D G EI ++ +L +
Sbjct: 62 AVWRLCKPKLICEATPAAEDDAPTDDPKKQKHDHGGCGNAQPEI----RREGLRLTGTWK 117
Query: 174 GFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNH 233
P E + +P+++ ++ + V + + + E LS D + +T
Sbjct: 118 ---PQKGDDETEAQQPDKRPITPQMVLNIFRHISNEDIERMGLSNDYARPEWMIITVLPV 174
Query: 234 RVTEVPHAFSHEKKLFF---DNWTRHLKKMVDYRGR----DIELS--HLVQDCLKISKLH 284
V + S + D+ T L ++ G D E S H+V + ++ + H
Sbjct: 175 PPPPVRPSISVDGGNGLRGEDDLTYKLGDIIRANGNVQRCDAEGSPAHVVNEFEQLLQFH 234
Query: 285 LDKSSRKDSA--------EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNI 336
+ D A R K+I ++ ++GKR D R V+TGDPN+
Sbjct: 235 VATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 294
Query: 337 KLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-GELYVCRKGGLVRIRRID- 394
L E+G+P +A+ L E + +N ++L + + G YV R G RID
Sbjct: 295 SLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNDHPGAKYVLRDTG----ERIDL 350
Query: 395 ---------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLC 445
+L+ G + R + DGD ++ NR PS+H S++ V+V+P S+ +N
Sbjct: 351 RHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTF-RLNLSV 409
Query: 446 CSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
SP++ DFDGD ++ ++PQ+ R E+ +L + +++ Q L+ + QD+L + +
Sbjct: 410 TSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNVVSPQRNGPLMGIVQDTLCGIYKI 469
Query: 506 MEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFSMLLP-------PDFE 557
V LS Q+ + ++ P + P I ++W+GKQL S+++P P
Sbjct: 470 CRRDVFLSRDQVMNILLWVPDWDGVIPQPAIIKPRAMWTGKQLISLVVPTGLNLVRPGDH 529
Query: 558 YTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI-KRYRDKVLDFLYAAQEVLCE 613
FP +D V + G ++ +++ G + + ++ D + F AQ ++
Sbjct: 530 GFFPLEDDTLVVLGGELMVGLLKKAYVGASPGGIIHIIYNEKGSDAAMSFFNGAQTLVNY 589
Query: 614 WLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKD 673
WL G ++ + D R+ ++ + Q+ N Q+ V +
Sbjct: 590 WLLHNGFSIGIGDTI-----PDRETIL--------QIQNAVNNQKDEV--------TKIT 628
Query: 674 SESTR----SLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
E+TR SL G ++ ++E + S AL++A +A +++L N+ M
Sbjct: 629 DEATRNQLESLPGMNVRETFESKVSQALNKARDEAGTVTEKSLKDL--------NNATQM 680
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
++GSKG+ + + Q + +G Q S+ R P D + ++ +
Sbjct: 681 ARSGSKGSTINISQMTAVVG-QQSVG--GKRIPFGFKYRTLPHFTKDDYSPESRGF---- 733
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRN 845
VENS+L GL P E F H++ R+ G + RRL+ + D+ YDGTVRN
Sbjct: 734 -VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMCKYDGTVRN 792
Query: 846 AYGNQIVQFSYNIEG 860
+ G+ IVQF Y +G
Sbjct: 793 SLGD-IVQFVYGEDG 806
>gi|397135896|gb|AFO11443.1| RNA polymerase I, partial [Schwanniomyces etchellsii]
Length = 872
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 160/570 (28%), Positives = 269/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPLSIARTLTYPEIVTPYNIHRLTEFVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSHETRAELSEICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMLYWIPNWNGIIPPPAVVRPKPLWTG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQ+ SM +P D KD + + G + + G L ++
Sbjct: 388 KQILSMAIPKGIHLQRFDDGTNLLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D + M +I ++EA+D
Sbjct: 448 REKGPQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADPET------MKDITITIQEAKD 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
QQ+++D+ +N L D E +L+ S+E S L+QA A + +++
Sbjct: 502 KV--QQIILDAQLNKL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P S +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSDRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDG 685
>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
solfataricus P2]
gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
Length = 880
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 238/923 (25%), Positives = 387/923 (41%), Gaps = 151/923 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG-NT 64
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR----------------KER 109
C GHFG I+ ++H + I + L + C +C ++ K+R
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 110 QKGAGSSRKE-------QPRVCKYCVRNPAQWYPRMR--FKLSSKDLSGKTAII-VEIDE 159
A E + +VC +C N Q+ ++ + + G + +I E
Sbjct: 125 WPSAARRLTEYVKKTAMKAQVCPHC--NEKQYKIKLEKPYNFYEERKEGVAKLTPSDIRE 182
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSK 218
+L +K+PD + +D + +P +L+ V + + PSI E I ++
Sbjct: 183 RL----EKIPDSDVEILGYDP----TTSRPEWMILTVLPVPPIT--IRPSIMIESGIRAE 232
Query: 219 DAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCL 278
D K + N R+ E A + + + D W + Y +I L
Sbjct: 233 DDLTHKLVDIVRINERLKESIDAGA-PQLIIEDLWDLLQYHVATYFDNEIP-------GL 284
Query: 279 KISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKL 338
SK + R + ++ K+ N SG KR D R V++ DPNI +
Sbjct: 285 PPSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPDPNISI 334
Query: 339 KEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID--- 394
E+G+P +A+ L + ER+ WN E+L I+ G YV R G RRID
Sbjct: 335 DEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG----RRIDLRY 390
Query: 395 ---------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLC 445
L G II R L DGDIVL NR PS+H S++A V+VL +N L
Sbjct: 391 VKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLK-GLTFRLNLLV 449
Query: 446 CSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
C P++ DFDGD ++ ++PQ+ A E E++ + K +I + G ++ QD ++ A+LL
Sbjct: 450 CPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLL 509
Query: 506 MEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSK-- 563
+ LL+ + QQ+ + + ++ ++GKQ+ S LP DF + +
Sbjct: 510 TVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVS 569
Query: 564 -------------DVYISGGKLISAEGSSWLRDYEGN-----LFQYLIKRYRDK----VL 601
D Y+ I EG + + GN + +LIK Y D+ ++
Sbjct: 570 SGPRLCKNEDCPHDSYVVIKNGILLEGV-FDKKAIGNQQPESILHWLIKEYSDEYGKWLM 628
Query: 602 DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMV 661
D L+ V ++ ++G T+ L D+ L D++ +E + + ++ V
Sbjct: 629 DNLF---RVFIRFVELQGFTMRLEDVSLG----------DDV---KKEIYNEIDRAKVEV 672
Query: 662 DSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD 721
D N + K+ E + G L +L +D + ++A KY
Sbjct: 673 D---NLIQKYKNGE-LEPIPGRTLE------ESLENYILDTLDKLRSTAGDIASKYLDPF 722
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N M + G++G++L + Q + LG Q R + D + A+
Sbjct: 723 NFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDISPEAR 779
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTA 838
+I S SF TGL P E F H+ R+ D A G + RRL+ + DL
Sbjct: 780 GFIYS-----SFRTGLKPTELFFHAAGGREG-LVDTAVRTSQSGYMQRRLINALSDLRAE 833
Query: 839 YDGTVRNAYGNQIVQFSYNIEGT 861
YDGTVR+ YG ++VQ +Y +G
Sbjct: 834 YDGTVRSLYG-EVVQVAYGDDGV 855
>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
Length = 1828
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 168/585 (28%), Positives = 269/585 (45%), Gaps = 71/585 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR + R V+T DP I + E+G+P +A L ER+ +N + L ++ R
Sbjct: 324 VRGNLMGKRVNFSGRSVITADPTIDIDEVGVPKSLAAILTFPERVTRYNIKELEKLVNQR 383
Query: 373 LLEKGELYVC----RKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G Y+ R+ L I L+ G I+ R + +GDIVL NR PS+H S++
Sbjct: 384 DKWPGAKYIIDLDGRRYDLRYTNGIPQLKEGMIVERHINNGDIVLFNRQPSLHKMSIMGH 443
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+VL S+ +N C +P++ DFDGD ++ ++PQ + AR E+TEL+ + K +I+ +S
Sbjct: 444 RVRVLNYSTF-RLNLSCTTPYNADFDGDEMNIHVPQTVQARAEVTELMMVHKNIISPKSN 502
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS--KDS----VW 542
++ + QD+L + L + ++ M + M+ + I ++ KD +W
Sbjct: 503 GPVMGIVQDTLLGSQKLTQRDTFVAKDMMMNMVMWVDDFDGNIPIPAVTAHKDGKLVPLW 562
Query: 543 SGKQLFSMLLPPDF---EYTFPSK------------DVYISGGKLISA--EGSSWLRDYE 585
+GKQ++S++LP D ++ P +V I G+L+ + +S
Sbjct: 563 TGKQMYSLILPKDLNIQRFSTPYDKNKKVPLNMMDCEVLIEEGELLMGIIDKNSIGNTKS 622
Query: 586 GNLFQYLIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G + L+ R D FL Q ++ WL RG +V L D+ + M+E+
Sbjct: 623 GGITHVLMNDRGPDAAKAFLGLNQRMVNYWLMNRGFSVGLGDMVPTPET------MNEV- 675
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA---SVD 701
M+ + AK ++ QG+H EKQ + Q SV+
Sbjct: 676 --------------------MDLIAKAKRKVTSLIQQGQHKQLEKQPGKTIEQYFEWSVN 715
Query: 702 AFKHVFWD-IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
+ + + Q K+ DNSL AM AGSKG L L Q S C+G Q+ R
Sbjct: 716 SELNTMANQTQKTIMKHLKSDNSLQAMAVAGSKGAPLNLQQISGCVGQQNVDGK---RIA 772
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ D A + V NS+L GL P E + H++ R+
Sbjct: 773 YGFMYRTLPHFCKDDLGADAHGF-----VVNSYLKGLTPQEFYFHAMGGREGIIDTAVKT 827
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G + RRL+ M DL YDGTVRN+ G QIVQF Y +G +
Sbjct: 828 SKTGYIQRRLIKSMEDLMVYYDGTVRNSRG-QIVQFLYGEDGMDS 871
Score = 44.7 bits (104), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSE-----VTNPRLGLPNPTNECSSCGAKDR 66
V + + TGI E ++ +EI A + + +PR+G + + +C +C +
Sbjct: 28 VKNSVTTGIG------GEDNGITRVEISANGKPVKGGLNDPRMGTISSSGKCETCN-RSY 80
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ C GHFG I I H FL I ++L IC C
Sbjct: 81 EDCPGHFGHIHLNAEIFHTGFLDIIYRVLTCICFNC 116
>gi|347522775|ref|YP_004780345.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
gi|343459657|gb|AEM38093.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
Length = 882
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 233/952 (24%), Positives = 393/952 (41%), Gaps = 165/952 (17%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECSS 60
V I+ I GI + E K+SV+ I + +PRLG P C +
Sbjct: 2 VEEKIIKEIKFGILSPDEIRKMSVVAITTDQLYDPDGRPIPGGLMDPRLGAAIPGQRCET 61
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR-KERQ-----KGAG 114
CG D + C GHFG I+ +++ F I ++L + C C I+ ER+ K
Sbjct: 62 CG-NDYRLCPGHFGRIELALPVINVGFARHIYEILRATCRNCGRIKLPERELKRYLKLLE 120
Query: 115 SSRKEQPRVCKYCVRNPAQWYPR-------------MRFKLSSKDLSGKTAIIVEIDEK- 160
+ + P + K + Q + + F+ K + A V ++ +
Sbjct: 121 RLKNKWPLLAKALINEVKQRAAKTTECPHCKEHNYKIVFEKPYKYYEDRPAGRVPLNPRE 180
Query: 161 LSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-REEFILSKD 219
+ + +K+PDD + D ++ +P VL+ V + V PSI E I ++D
Sbjct: 181 VRSRLEKIPDDDVKLLGLDPKE----ARPEWMVLTVLPVPPI--HVRPSIVLETGIRAED 234
Query: 220 APFLKCFPVTPNNHRVTE-----VPHAFSHEKKLFFDNWTRHLKKMV-DYRGRDIELSHL 273
K + N ++ E +PH+ D W L+ V Y ++ +
Sbjct: 235 DLTHKLADIVRTNEKLRETLESGMPHSV-------IDEWWNLLQYHVATYIDNELPKIPV 287
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
+ + + + R E R + N+ GKR + R V++ D
Sbjct: 288 ARQRGGLGRPLKGLAQRLKGKEGRFRGNLS---------------GKRVNFSARTVISPD 332
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRR 392
PNI + E+G+P ++A+ L ++ R+ WN E L I+ G YV G R+
Sbjct: 333 PNISINEVGVPIEIAKILTVAVRVTPWNIEELRKYVINGPDKWPGANYVIDPRG----RK 388
Query: 393 ID-----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTI 441
ID AL+ G I+ R L DGDIVL NR PS+H S++A V+VLP +
Sbjct: 389 IDLRFADRKSIAEALQPGWIVERHLKDGDIVLFNRQPSLHRMSIMAHIVRVLP-GKTFRL 447
Query: 442 NPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTA 501
N L C P++ DFDGD ++ ++P+ A+ E EL+ + ++ + G ++ QD ++
Sbjct: 448 NLLVCPPYNADFDGDEMNLHVPRTEEAQAEARELMLVQFHILTPRYGGVIIGGLQDYISG 507
Query: 502 AHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFP 561
A+LL + +L+ + L + P+ +S +W+GKQL S+ LP DF +
Sbjct: 508 AYLLTSKATILTLDDVVDLLAAAKYEGEIPEPVILSPKKLWTGKQLVSLFLPKDFTFRGK 567
Query: 562 SKDVYISGGKLISAEGSSWLRDY----EGNLFQYLIKR---------------------- 595
+K IS G ++ W Y G L + + +
Sbjct: 568 AK---ISSGAFACSDELCWNDSYIVIKNGELLEGVFDKKAIGAEQTESVLHQLTKEYGFD 624
Query: 596 YRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
Y +++D L+ ++ ++ G T++L D+ L + K + EI L+EA+
Sbjct: 625 YVRRLMDTLF---KMFLRYIEKHGFTMTLEDVALPPEA---KEHIREI---LKEAEKKV- 674
Query: 656 FQQLMVDSHMNFL--MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
Q+L+ L + + E T L+ + +A DA + + + ++
Sbjct: 675 -QELIEQYREGRLEPVPGRTLEETLELK-------------IIEALTDARRKIEQYVADV 720
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRA 773
+ N++ M + G++GN L + Q + LG Q R +
Sbjct: 721 LDPF----NNVFIMARTGARGNELNITQMAAILGQQTVRGE---RISRGYRGRYLPHFKP 773
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMF 830
GD A+ + V + F GL P E F H+ R+ D A G + RRL+
Sbjct: 774 GDLGPAARGF-----VYHGFYDGLTPTEVFFHAAGGRE-GLVDTAVRTSQSGYMQRRLIN 827
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
++DL YDGTVR G +VQ Y GE G P+ S A++
Sbjct: 828 ALQDLRVEYDGTVRLPDGT-LVQIKY---------GEDGVDPMKSAHGKAVN 869
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 157/577 (27%), Positives = 270/577 (46%), Gaps = 64/577 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +R+ I
Sbjct: 313 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRRG 372
Query: 373 LLEK-GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G YV R+ G V+ LE+G + R + DGD+V+ NR PS+H S+
Sbjct: 373 PDEHPGAKYVIREDGQRFDLRFVKKLTDTHLEVGYKVERHVQDGDVVIFNRQPSLHKMSM 432
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +KV+P S+ +N +P++ DFDGD ++ ++PQ + R E+ E++ + +Q+++
Sbjct: 433 MGHRIKVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSP 491
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QDSL + L + + M + M+ P + P I+K K +W
Sbjct: 492 QSNRPVMGIVQDSLLGSRLFTKRDTFIERDLMMNILMWLPSWDGKIPPPAIWKPKK--LW 549
Query: 543 SGKQLFSMLLP----PDFEYTFPSKD-----------VYISGGKLISA-EGSSWLRDYEG 586
+GKQ+FS+++P F T K+ V I G+L+S L G
Sbjct: 550 TGKQIFSLIIPKINLTRFTSTHNDKEKEKSEMASDTVVIIDQGELMSGILCKRSLGSANG 609
Query: 587 NLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
++ + + + F+ Q V+ WL G TV + D S + M ++
Sbjct: 610 SIIHVVQNEHGHEATRCFIDQTQTVVNSWLISHGFTVGIGDTIADSAT------MAKVQN 663
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+ A+ ++L++ + N + + +S+ S+EK+ + L+ A DA
Sbjct: 664 AITSAK--TQVKELIIKAQSNQF----ECQPGKSMLE---SFEKEVNRVLNTARDDA--- 711
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
A K + N++ AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 712 -----GTSAQKSLQESNNVKAMVNAGSKGSFINISQMMACVGQQNVEGK---RIPFGFQN 763
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGT 823
D ++ + VENS+L GL P E F H++ R+ G
Sbjct: 764 RTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 818
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M D+ YD TVRN+ G+ ++QF+Y +G
Sbjct: 819 IQRRLVKAMEDVSVRYDATVRNSLGD-VIQFAYGEDG 854
Score = 48.1 bits (113), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D++R+ ++I GI+A L L + IS G + HL ++A+ ++ G
Sbjct: 1319 VDFSRTVSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAMLADVMTYRGHL 1378
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + S P ++ F ++AA DN+ G + + G++P +
Sbjct: 1379 MAITRHGI-----NRVESGPLMRCSFEETVEILMEAALFSETDNICGVTENIILGQLPPL 1433
Query: 1252 GTGG-----HFDIIYSGEGRTLSKPVDV 1274
GTG + D+I + +L +P+ +
Sbjct: 1434 GTGSFEVYLNQDMIKNAHSISLPEPMAI 1461
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 227/959 (23%), Positives = 391/959 (40%), Gaps = 169/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGAV-------------SEVTNPRLGLPNPTNECSSCGAKDR 66
+ GI + E ++SV G + + +PR G+ + C +C A ++
Sbjct: 16 VQFGILSPDEVRRMSVTTEGGIRFSETYEGGRPKLGGLMDPRQGVMDRITRCQTC-AGNQ 74
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKY 126
C GHFG I+ + H FL K+L +C C + P++ +
Sbjct: 75 VECPGHFGHIELAKPVFHIGFLVKAIKILRCVCFYCSKLL---------VSPTNPKIKEV 125
Query: 127 CVRNPAQWYPRMRFKLSSKDLSGKTA--------IIVEIDEKLSKKNKKLPDDYWG-FIP 177
++ Q PR R GK + E E+ + KK+ G + P
Sbjct: 126 VMKTKGQ--PRKRLVYVYDLCKGKNICEGGDEIDMPKENQEEALARGKKVGHGGCGRYQP 183
Query: 178 ------FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPF----- 222
D E V + + VL+ ++V + K + + E FIL D F
Sbjct: 184 SIRRSGLDLTAEWKHVNEDSQEKKIVLTAQRVWEIFKHI--TDEECFILGMDPKFARPDW 241
Query: 223 --LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV------DYRGRDIELSHLV 274
L PV P R V + + + D+ T L ++ + + +H++
Sbjct: 242 MILTVLPVPPLAVRPAVVMYGSARNQ----DDLTHKLSDIIKANNELQHNEQAGGATHVL 297
Query: 275 QDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRND 323
+ +K+ + H L ++ +K ++ K + G I+ ++GKR D
Sbjct: 298 AENIKLLQFHVATLIDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGNLMGKRVD 354
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVC 382
R V+T DPN+++ ++G+P +A+ + E + +N ++ + + G Y+
Sbjct: 355 FSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLSKMQELVQRGNSQYPGAKYIV 414
Query: 383 RKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
R G RID L+ G + R + DGD+V+ NR P++H S++ VKV
Sbjct: 415 RDNG----DRIDLRFHPKTSDLHLQCGYKVERHVGDGDLVIFNRQPTLHKMSMMGHRVKV 470
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
LP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 471 LPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVM 529
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFS 549
+ QD+LTA + + V L QM L MF P + P I K +W+GKQLFS
Sbjct: 530 GIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILK--PKPLWTGKQLFS 587
Query: 550 MLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLF 589
+++P PD E P K + K++ G L G+L
Sbjct: 588 LIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLL 647
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
++ Y Q V+ WL G ++ + D + EI ++
Sbjct: 648 HICYLELGHELCGQFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYL------EIQRAIK 701
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 702 KAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------ 746
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 747 --GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 804
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 805 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 848
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YD TVRN+ G Q++Q Y +G E + P LS
Sbjct: 849 AETGYIQRRLIKAMESVMVHYDSTVRNSVG-QLIQLRYGEDGLCGEIVEFQNLPTIKLS 906
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 196 bits (499), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 227/941 (24%), Positives = 385/941 (40%), Gaps = 168/941 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 15 VQFGILSPDEIRRMSVTEGGIRYAETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMS 73
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F+ K+L +C P I++ K G RK
Sbjct: 74 ECPGHFGHIDLCKPVFHIGFIVKTIKILRCVCFYCSKLLVSPTNPKIKEIVMKSKGQPRK 133
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAI------IVEIDEKLSKKNKKLPDD 171
V C +N + M +G++A + + L +
Sbjct: 134 RLVFVYDLCKGKNICEGGDEMDIAKEEDAAAGRSAARPTHGGCGRYQPSIRRTGLDLSAE 193
Query: 172 YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPN 231
W I D+Q+++ S L+ ++V +LK + S E FIL D F + P+
Sbjct: 194 -WKHINEDSQEKKIS-------LTAERVWEILKHI--SDEECFILGMDPKFAR-----PD 238
Query: 232 NHRVTEVPHAFSHEKKLFF--------DNWTRHLKKMVDYRG------RDIELSHLVQDC 277
+T +P + D+ T L +V +H++ +
Sbjct: 239 WMIITVLPVPPLPVRPAVVMYGSAKNQDDLTHKLSDIVKANADLARNEAAGAAAHVIAEN 298
Query: 278 LKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
+K+ + H+ D QK K I I+ ++GKR D R V
Sbjct: 299 IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 358
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE------LYVCR 383
+T DPN+++ ++G+P +A+ L E + +N E++ L+++G Y+ R
Sbjct: 359 ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKM-----IELVQRGNSQYPGAKYIVR 413
Query: 384 KGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
G RID L+ G + R + D D+V+ NR P++H S++ VKVL
Sbjct: 414 DNG----ERIDLRFHPKPSDLHLQCGYRVERHIKDDDLVIFNRQPTLHKMSMMGHRVKVL 469
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+I Q+ + ++
Sbjct: 470 PWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQANKPVMG 528
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSM 550
+ QD+LTA + + V + QM + MF P + P I K +W+GKQ+FS+
Sbjct: 529 IVQDTLTAVRKMTKRDVFIEKEQMMNILMFLPIWDGKMPQPAILK--PKPLWTGKQVFSL 586
Query: 551 LLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQ 590
++P PD E P K + K++ G L G+L
Sbjct: 587 IIPGNVNLIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSLLH 646
Query: 591 YLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+V Y Q V+ WL + G ++ + D + EI +R+
Sbjct: 647 ICFLELGHEVCGRFYGNIQTVINTWLLLEGHSIGIGDTIADPQTYM------EIQRAIRK 700
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 701 AKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------- 744
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHEL 763
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 745 -GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFI 803
Query: 764 SCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 804 K----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 847
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 848 ETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDG 887
>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
Length = 870
Score = 196 bits (499), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 191/725 (26%), Positives = 323/725 (44%), Gaps = 91/725 (12%)
Query: 183 EENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP-----FLKCFPVTPNNHRVTE 237
+EN +P R++L+ ++ + K + P + + D + PV P + R
Sbjct: 3 DENE-QPERRLLTPGEILNVFKHISPEDSYKLGFNDDYARPEWMLITVLPVPPPHVR--- 58
Query: 238 VPHAFSHEKKLFFDNWTRHLKKMVDYR------GRDIELSHLVQDCLKISKLHLDKSSRK 291
P ++ D+ T L +V Y D H++ + + + H+
Sbjct: 59 -PSVQVNDTARSEDDLTFKLADIVKYNMSVQKLEMDGSPQHVIAEYEALLQFHVATYMDN 117
Query: 292 DSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
D A + QK K+I ++ ++GKR D R V++GDPN+ L ++G+
Sbjct: 118 DIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGV 177
Query: 344 PCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRID-------- 394
P +A L E + +N +L+ + E G YV R G RID
Sbjct: 178 PRSIARTLTYPEMVTPYNIHKLTELVRNGPNEHPGARYVFRDTG----ERIDLKYHKRAG 233
Query: 395 --ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
AL+ G I+ R L D D VL NR PS+H S++A VKV+P S+ +N SP++ D
Sbjct: 234 DIALQYGWIVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTF-RMNLSATSPYNAD 292
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGD ++ ++PQ+ R EL+++ A+ Q+++ QS + ++ + QD+L + V +
Sbjct: 293 FDGDEMNLHVPQSEETRAELSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFI 352
Query: 513 SHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-------PDFEYTFPS 562
+ ++ + + P R P I K +W+GKQ+ SM++P D ++T+ S
Sbjct: 353 EYDEVMNILYWIPDWDGRIPEPTIVK--PKPLWTGKQMLSMVIPKGINIERKDEKFTYLS 410
Query: 563 KD----VYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSV 617
KD + + G ++ + G L + + + L+ Q+V+ WL
Sbjct: 411 KDDTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQACATLFGNIQKVVNYWLLH 470
Query: 618 RGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
G ++ + D +A R I D I A+D Q+++ + N L E
Sbjct: 471 NGFSIGIGDT-IADAPTVRSI-TDTI----NAAKDKV--QEIITKAQNNQL----PPEPG 518
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLL 737
+L+ S+E+ S L+QA D K +Q+ N++ M AGSKG+ +
Sbjct: 519 MTLRE---SFEQNVSQVLNQARDDVGKATADSLQDW--------NNVKQMVSAGSKGSNI 567
Query: 738 KLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGL 797
+ Q S C+G Q R P S + D + +K + VENS+L GL
Sbjct: 568 NISQMSACVGQQIVEGK---RIPFGFSDRSLPHFTKDDYSPESKGF-----VENSYLRGL 619
Query: 798 NPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E F H++ R+ G + RRL+ + D+ YDGT RN+ GN ++QF
Sbjct: 620 TPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VLQFV 678
Query: 856 YNIEG 860
Y +G
Sbjct: 679 YGEDG 683
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 218/949 (22%), Positives = 394/949 (41%), Gaps = 169/949 (17%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSS 60
P ++ + G+ + E +++SV E G + + +PR G+ + C +
Sbjct: 12 PLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQT 71
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKE 108
C A + C GHFG I+ + H F++ I K+L +C PK K I
Sbjct: 72 C-AGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILT- 129
Query: 109 RQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLS-----SKDLSGKTAI--IVEIDEK 160
K G RK V C +N + M K S+D++ + +
Sbjct: 130 --KSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPR 187
Query: 161 LSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
+ + +L + W + D+Q++ + +LS ++V + K + + E+ IL D
Sbjct: 188 IRRSGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--ADEEDIILGMDP 237
Query: 221 PFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------D 267
+ + PV P R V + + D+ T L +V +
Sbjct: 238 KYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLKRNEQS 293
Query: 268 IELSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLG 319
+H++ + +K+ + H L R R K+I ++ ++G
Sbjct: 294 GAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMG 353
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGE 378
KR D R V+T DPN+++ ++G+P +A + E + +N +RL + + G
Sbjct: 354 KRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGA 413
Query: 379 LYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G RID L++G + R + DGDI++ NR P++H S++
Sbjct: 414 KYIIRDNG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGH 469
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS
Sbjct: 470 RVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSN 528
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGK 545
R ++ + QD+LTA + V L ++ L MF + P I K +W+GK
Sbjct: 529 RPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGK 586
Query: 546 QLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYE 585
Q+FS+++P PD E + P K++ K+I G L
Sbjct: 587 QIFSLIIPGHINAIRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSA 646
Query: 586 GNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G+L + Y+ Q V+ WL + G ++ + D S + K +I
Sbjct: 647 GSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGD------SIADKATYQDIQ 700
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVD 701
+++A+ + +++ +H N L + ++ + + L+ + ++ + +Q S+
Sbjct: 701 NTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 758
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
+ N+ +M AGSKG+ + + Q +G Q+ P F+
Sbjct: 759 EY------------------NNFKSMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFK 800
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 801 HRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGL 844
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 845 IDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 892
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 155/572 (27%), Positives = 261/572 (45%), Gaps = 65/572 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L ++G+P A L ER+ +N +LS + E
Sbjct: 353 LMGKRVDFSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTPYNIHKLSELVRNGPSEH 412
Query: 376 KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G ++ R+ G L +R ++L G I+ R + DGD ++ NR PS+H S++
Sbjct: 413 PGAKHIIREDGSRIDLRYHKRAGEIQLQNGWIVERHIVDGDYIIFNRQPSLHKESMMGHR 472
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ L A+ +++ Q
Sbjct: 473 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSHETRSEVANLCAVPHNIVSPQKNG 531
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLF 548
L+ + QD++ +++ + ++ + Q+ + ++ P + P + W+GKQ+
Sbjct: 532 PLMGIVQDTMAGIYMMTKRDTMMDYEQVMNIMLWVPGWDGIVPQPAILKPVPRWTGKQIM 591
Query: 549 SMLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYEGNLFQYLI--K 594
SM LP D V + G+L+ + L G +LI
Sbjct: 592 SMGLPSGLNIMKLGDDEDHISLAEADSSVLVQNGELVWGRLTKKLVGASGGGIVHLIFND 651
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
R D ++F AAQ ++C WL G +V + D + +A
Sbjct: 652 RGTDATVEFFNAAQRIVCYWLLHNGFSVGIGDT-------------------IPDADMVL 692
Query: 655 NFQQLMVD--SHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDI 710
+Q +V + ++ M S+ +L G + ++E Q AAL A +A
Sbjct: 693 AIEQNIVKEKATVDGYMREVQSDEMEALPGMTIRETFESQTKAALDNARNNA-------- 744
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
+ AYK N++ M K GSKG+ + Q + +G Q SL R P
Sbjct: 745 GDAAYKGMKPCNNVGVMVKGGSKGSTTNVSQMTAAVG-QQSLE--GKRLPFGFKDRVLPH 801
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D + ++ + VENS+L GL P E F H++ R+ G + RRL
Sbjct: 802 FPKDDYSPASRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 856
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 857 VKALEEIMIKYDGTVRNSLGD-ILQFVYGEDG 887
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
+ +P+LG + + C++CG + ++ C GHFG I+ + H +++ I K+L S+C C
Sbjct: 53 LNDPKLGTIDRSQMCATCG-ESQQECPGHFGHIELAVPVYHVGYITKIKKILESVCNNCG 111
Query: 103 KTIRKER 109
K + ER
Sbjct: 112 KLLEDER 118
Score = 42.0 bits (97), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR+ ++ +S +GI+A + L+ +++ G + H+ I+ + + A GE
Sbjct: 1345 VDSTRTTCNHFQSTMRVFGIEAVRASLMRELKDVLTNDGSYVNHRHMAILCDVMCARGEL 1404
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + + ++ F +AA +G +D+ +G + + G++
Sbjct: 1405 MAVTRHGI-----NRADTGALMRCSFEETVEILFEAASSGELDDCRGVSENIILGQLAPS 1459
Query: 1252 GTGGHFDIIYSGE 1264
GT G FD++ E
Sbjct: 1460 GT-GEFDVLLDNE 1471
>gi|83320458|gb|ABC02856.1| RNA polymerase II largest subunit, partial [Endogone pisiformis]
Length = 845
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 155/577 (26%), Positives = 267/577 (46%), Gaps = 72/577 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + + E
Sbjct: 105 LMGKRVDFSARTVITGDPNLMLDEVGVPRSIARNLTYPEIVTPYNIDKLQLMVRNGPTEH 164
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L G + R + DGD+V+ NR PS+H S+
Sbjct: 165 PGAKYVIRDTG----ERIDLRYHKRAGDIPLSYGYKVERHINDGDVVIFNRQPSLHKMSM 220
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ++ R E+TE+ + KQ+++
Sbjct: 221 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVETRAEITEICRVPKQIVSP 279
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS ++ + QD+L + L+ + + ++ P P + +W+G
Sbjct: 280 QSNXPVMGIVQDTLCGIRKFTKRDCFLTKEMVMNIVLYVPAWDGQIPAXAILKPKPMWTG 339
Query: 545 KQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISA-EGSSWLRDYEGNL 588
KQ+ SM++P P+ E T+ S V+I G LI + +G L
Sbjct: 340 KQIVSMVIPEXINCDTFHSSHPEAENTWMSPGDTRVHIEDGDLICGIVCKKTVGTADGGL 399
Query: 589 FQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
++ DFL Q V+ WL G ++ + D + + K M+ I +
Sbjct: 400 IHTIVNELGHTAARDFLSGTQTVVNFWLLNHGFSIGIGD------TIADKETMNSITNII 453
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKH 705
A+ S ++ ++ A + G + S+E + + AL++A DA K
Sbjct: 454 STAK-----------SRVSDIILAAQQDKLECEPGMTIRESFEAKVNQALNKARDDAGKK 502
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
++ +DN++ M +GSKG+ + + Q S C+G Q+ R P+
Sbjct: 503 AQASLR--------EDNNVKQMVVSGSKGSFINISQMSACVGQQNVEGK---RIPYGFKF 551
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D++ ++ + VENS+L GL P E F H++ R+ G
Sbjct: 552 RTLPHFTKDDHSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGY 606
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 607 IQRRLVKALEDVMVKYDGTVRNSLGD-VIQFCYGEDG 642
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 229/949 (24%), Positives = 394/949 (41%), Gaps = 181/949 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVIDRHSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K L +C C + P++ +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVS---------PNNPKIKEVV 125
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENS- 186
+++ Q PR R GK I DE K + P+ +GF+ A+++ +
Sbjct: 126 MKSKGQ--PRKRLAFVYDLCKGKN-ICEGGDEMDVGKEGEDPNQEFGFL---AKKQGHGG 179
Query: 187 ---VKPN---------------------RKV-LSCKQVSYLLKDVDPSIREEFILSKDAP 221
+PN RK+ LS ++V +LK + + E FIL D
Sbjct: 180 CGRYQPNIRRTGLDLTAEWKHLNEDSQERKIALSAERVWEILKHI--TDEECFILGMDPK 237
Query: 222 FLKCFPVTPNNHRVTEVPHAFSHEKKLFF-----DNWTRHLKKMVDYRGRDIEL------ 270
F + P+ VT +P + N K+ D + EL
Sbjct: 238 FAR-----PDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELQKNEAA 292
Query: 271 ---SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLG-------- 319
+H++ + +K+ + H+ D + + + L+ IK + G
Sbjct: 293 GAAAHVISENIKMLQFHVATLVDNDMPGMPRAMQ---KSGKPLKAIKSRLKGKEGRIRGN 349
Query: 320 ---KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
KR D R V+T DPN+++ ++G+P +A+ L E + +N++++S + +
Sbjct: 350 LMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMSELVQRGNSQY 409
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R + DGD+V+ NR P++H S+
Sbjct: 410 PGAKYIIRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSM 465
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+I
Sbjct: 466 MGHRVKVLPWST-FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITP 524
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q+ + ++ + QD+LTA + + V + QM L MF P + P I K +W
Sbjct: 525 QANKPVMGIVQDTLTAIRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPRPAILK--PKPLW 582
Query: 543 SGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLR 582
+GKQ+FS+++P PD E P+K + K++ G L
Sbjct: 583 TGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPNKWISPGDTKVMVEHGELVMGILCKRTLG 642
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 643 TSAGSLLHICMLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL------ 696
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 697 EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDK 747
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 748 T--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFR 799
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 800 KRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL 843
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 844 IDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDG 891
>gi|378756428|gb|EHY66452.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida sp. 1
ERTm2]
Length = 1609
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 214/889 (24%), Positives = 389/889 (43%), Gaps = 124/889 (13%)
Query: 31 EKLSVMEIGAVSE--VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFL 88
E ME G E + + RLG CS+CG + +C GHFG+I+ + H ++
Sbjct: 32 EHPETMESGVPKEGGLVDLRLGTSERGFLCSTCGHRS-DSCVGHFGYIELAKPVFHIGYI 90
Query: 89 SDIAKLLNSICPKCKTIRKERQKGAGS---SRKEQPRVCKYCVRNPAQWYPRMRFKLSSK 145
I K+L S+C C +R E+ ++KE+ R Y M +S++
Sbjct: 91 GKIKKVLESVCFFCSKLRVEKSSLPSPKPRTQKERKRRLNYIWNLAKNRAICMGEVVSNE 150
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
D +T + + + + + F +E + + +LS ++V +L+
Sbjct: 151 DNPEET-----LRTGCENRQPTIRKEGLHLLAFQKGEESSE---GKTMLSAEKVLEILRR 202
Query: 206 VDPSIREE--FILSKDAP---FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 260
+ E F L K P ++ PV P R P D+ T L +
Sbjct: 203 IPEEDIEALGFDLEKARPEWMVIRILPVPPPQVR----PSIVMEGSLRCEDDLTHKLADI 258
Query: 261 VD-------YRGRDIELSHLVQDCLKISKLHL------DKSSRKDSAEV--RQKKNIDIS 305
+ Y + H+++D ++ + H+ D S + S + R K I
Sbjct: 259 IKASNNLKRYEQEGVA-GHIIRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRAR 317
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++ ++GKR D R V+T DPNI + E+G+P ++A+ L ER+ +N +L
Sbjct: 318 LRGKEGRVRGNLMGKRVDFSARTVITADPNISMNEVGVPEEIAKMLTFPERVTEYNISKL 377
Query: 366 SVCISFRLLEKGEL------YVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDI 411
S +L+++G YV R G ++ID L++G ++ R L++GD
Sbjct: 378 S-----QLVQRGPYNHPGANYVVRDDG----QKIDLRFHKGEVNLQIGYVVERHLSNGDT 428
Query: 412 VLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVE 471
VL NR PS+H S++A +V+ S+ +N +P++ DFDGD ++ ++PQ+I A+ E
Sbjct: 429 VLFNRQPSLHKMSMMAHKARVMKYSTF-RLNLSVTAPYNADFDGDEMNLHLPQSIPAQTE 487
Query: 472 LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH--RFL 529
L EL ++K +++ QS + ++ + QD+L + L + L+ Q+ L + ++L
Sbjct: 488 LKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFLTKSQVMHLHYAIDNGGKYL 547
Query: 530 SPDIFKISKDSVWSGKQLFSMLLPPDFEYTF---------------PSKDVYISGGKLIS 574
P I + + +++GKQ+FS L PD YT +V I G+L++
Sbjct: 548 KPTILRPA--VLYTGKQIFSATL-PDVTYTGLHSEHVHGKNYKANPMDTEVVIKNGELLA 604
Query: 575 A-EGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWL-SVRGMTVSLSDLYLAS 631
+ G L + + R +DF+ A Q + WL S +V + D
Sbjct: 605 GIICKKTVGTASGGLIHVIANDFPRSVCVDFIDALQRAISSWLMSYETFSVGIGDTIADP 664
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEK 689
S MD I + +A+ + + ++V + N L L G + S+E
Sbjct: 665 SS------MDMIKEAIEQAK--SDVKDIIVQAENNNL---------ERLPGLSMRESFEA 707
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ 749
+ AL++A + ++++ N++ M +GSKG+ + + Q S C+G Q
Sbjct: 708 AVTLALNKARDTSGTSTQKNLRS--------QNNIKQMVVSGSKGSYINISQMSACVGQQ 759
Query: 750 HSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTS 809
+ S + + D T ++ +I S S++ GL+P+E F H++
Sbjct: 760 SVEGKRILNGFRDRSLPHFTK---DDFTAESRGFISS-----SYVAGLSPVEFFFHAMGG 811
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
R+ G + RRL+ + D +D +VR+ G+ ++Q +Y
Sbjct: 812 REGLIDTAVKTAETGYIQRRLIKALEDAQVRHDKSVRDGEGH-VIQCAY 859
Score = 47.0 bits (110), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 160/402 (39%), Gaps = 76/402 (18%)
Query: 873 VGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKK----SNADQT-----MSL 923
VG+L+A +I E A L T L + + + G + NA QT +++
Sbjct: 1087 VGTLAAQSIGEPATQMT------LNTFHLAGVASTVTRGVPRLKEIINAAQTIKTPSLTI 1140
Query: 924 FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVR 983
+L ++ R+ E GA + + +E L DI+ S IIY P ++K +I + +
Sbjct: 1141 YLKEEI---RNTLE-GAKKAQQEIERCYLKDILLRSEIIYDPTMKAVKSDEDFIFAYGIL 1196
Query: 984 KEI--------MKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKEC 1035
M R L +++D R + +T + + + S+ + + ++ E
Sbjct: 1197 DSTIYSPDSPWMLRLVLNRSAMVDRGIRIEQVTKTIAQSTTYRCMHSDHNSAEQIIRCEL 1256
Query: 1036 NDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKV---DILWKDKQKAS 1092
++ E+ R +ET +M VKG +IK+V +I +DK+
Sbjct: 1257 PNS--------EDLLR---KIETSISCIM-------VKGMPKIKRVFISEIGAEDKK--- 1295
Query: 1093 KSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGID 1152
E L Q T L L + +ID TR+ ++ +GI+
Sbjct: 1296 --------EYVL------QTEGTGLMDVLGHP------LIDPTRTVSNDPLEMSQVFGIE 1335
Query: 1153 AGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPF 1212
A L + I G + HL I+A+ ++ G G+ G + S
Sbjct: 1336 AARTSILNEIRMVIESDGSYVNFRHLAILADIMTQRGHICGITRHG-----TNRGESGAL 1390
Query: 1213 VQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
++ F ++AA +D +G V+++ G V ++GTG
Sbjct: 1391 MRCSFEETVEILLEAAANAEIDRCKGVVESVMLGNVAAIGTG 1432
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 205/887 (23%), Positives = 372/887 (41%), Gaps = 124/887 (13%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + +C++C ++ C GHFG I+ + HP FL KLL +C C
Sbjct: 55 LNDPRLGSIDRQFKCATCD-QNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCG 113
Query: 104 TIRKERQ----KGAGSSRKEQPR------------VCKYCVRNPAQWYPRMRFKLSSKDL 147
++ +R K A S R + R VC+ V+ + + + + K
Sbjct: 114 KVKLDRSNPAYKAAVSIRDPKRRFEAIWKLCKVKMVCESDVQMNEEEFNGDPKEAAKKSH 173
Query: 148 SGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVD 207
G I E+ ++ WG ++ +V+P+++ ++ + + + +
Sbjct: 174 GGCGNIQPEV--------RQTALALWGTWKAPKDEDGEAVQPDKRQITPEMALNVFRSMT 225
Query: 208 PSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKK----LFFDNWTRHLKKMVDY 263
+ ++ L+ D + +T V + S + D+ T L ++
Sbjct: 226 TAEIQDVGLNADYARPEWMVITVLPVPPPPVRPSISMDGTGQGMRGEDDLTYKLGDIIRA 285
Query: 264 RG------RDIELSHLVQDCLKISKLHLDKSSRKDSA--------EVRQKKNIDISNSSG 309
G ++ H++QD + + H+ D A R K+I
Sbjct: 286 NGNVRQAQQEGSPQHILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGK 345
Query: 310 LRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + N ++L +
Sbjct: 346 EGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLV 405
Query: 370 SFRLLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPP 418
E G YV R G RID +LE G + R + DGD ++ NR P
Sbjct: 406 KNGPDEHPGAKYVIRSDGT----RIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQP 461
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ L +
Sbjct: 462 SLHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTYETRAEVMNLCMV 520
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V ++ + + ++ P + P +
Sbjct: 521 PLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNILLWVPDWDGVIPQPAILK 580
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYE 585
W+GKQ+ S+++P SKD I G+L+ +
Sbjct: 581 PRPRWTGKQIVSLIIPKIVNSYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVGAS 640
Query: 586 GNLFQYLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
GN +++ ++ D + F Q V+ WL G ++ + D + K +++I
Sbjct: 641 GNGIVHIVFNEQGPDAAMAFFNGCQRVINYWLLHNGFSIGIGD------TIPNKETIEQI 694
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVD 701
+ + + + + L+ S SL G ++ ++E Q S AL++A
Sbjct: 695 EKAIAKQK-----------AEVTELVEKATSNELESLPGMNVRETFESQVSKALNEARNT 743
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR 758
A + ++ N+ + M ++GSKG+ + + Q S +G Q P F+
Sbjct: 744 AGTKTEDGLLDI--------NNAVQMARSGSKGSTINISQMSALVGQQSVEGKRIPFGFK 795
Query: 759 F---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
+ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 796 YRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLID 841
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 842 TAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 887
>gi|389860841|ref|YP_006363081.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
gi|388525745|gb|AFK50943.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
Length = 880
Score = 196 bits (498), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 228/916 (24%), Positives = 376/916 (41%), Gaps = 141/916 (15%)
Query: 20 ISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKDRKA 68
+ GI + E ++SV I GA + V + RLG P C CG R
Sbjct: 7 VKFGILSPDEIRRMSVTNIITSDVYDSDGAPVDGGVMDKRLGAIEPKEVCPICG-NTRDE 65
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR---KERQKGAGSSRKEQPRVCK 125
C GHFG I+ ++H F I L + C C ++ ERQ + + K
Sbjct: 66 CPGHFGHIELAKPVIHAGFAKHIHMYLKTTCRVCGRVKLPENERQLYLKLLKDLEDLNLK 125
Query: 126 YCVRN---------------PAQWYPRMRFKLSSKDL---SGKTAIIVEIDEKLSKKNKK 167
Y V+ P P+ + KL + I+ ++ + +K
Sbjct: 126 YLVKRLHEFIRKRAAAQQTCPHCGAPQYKIKLDKPHTFYEDREEGIVKLTPAEVRSRLEK 185
Query: 168 LPDD---YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFL 223
+PDD G P DA +P VL+ V + V PSI E I S+D
Sbjct: 186 IPDDDVRLLGGDPTDA-------RPEWMVLTVLPVPP--RAVRPSILLETGIRSEDDLTH 236
Query: 224 KCFPVTPNNHRVTE-----VPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCL 278
K + N+R+ E P+A L D W + Y D E + Q
Sbjct: 237 KLVDIIRVNNRLREHVETGAPNA------LIEDEWELLQYHVTTYF--DNEAPGIPQAKH 288
Query: 279 KISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKL 338
+ K + R E R + N+ GKR D R V++ DPN+ +
Sbjct: 289 RTGKTLKGIAQRLKGKEGRFRGNLR---------------GKRVDFSARTVISPDPNLSI 333
Query: 339 KEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGL-VRIRRID-- 394
E+G+P VA+ L + E++ WN E + + ++ G YV R G + ++ +D
Sbjct: 334 NEVGVPEVVAKVLTVPEKVTPWNIEEMRKLVLNGPDKWPGANYVIRPDGRKISLKFVDRK 393
Query: 395 ----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
+L G I+ R L DGD+VL NR PS+H S++A V+VLP + +N L C P++
Sbjct: 394 AVAESLAPGFIVERHLLDGDVVLFNRQPSLHRISVMAHIVRVLPYKTF-RLNLLVCPPYN 452
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
DFDGD ++ ++PQ+ AR E L+ ++K ++ + G ++ QD ++ A LL S
Sbjct: 453 ADFDGDEMNLHVPQSEEARAEARILMLVEKHILTPRYGGPIIGGLQDYISGAFLLTNKST 512
Query: 511 LLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKD------ 564
+L+ ++ L ++ P+ W+GKQ+ S+ LP DF Y +K
Sbjct: 513 ILTKAEVIDLLSVAGYKGSLPEPAIQRPVEYWTGKQIVSVFLPGDFNYKRNAKIASASAL 572
Query: 565 ------------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQE 609
V I G+L+ + +S R+ +L +LIK + D F+
Sbjct: 573 RCIDEDCPHDSLVIIKKGQLLEGVIDKASIGREEPESLVHWLIKEHGEDVARKFMDNVYR 632
Query: 610 VLCEWLSVRGMTVSLSDLYLASHSCS--RKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
+ + + G T+S L + + R I+ D+ RE +L+ +
Sbjct: 633 MFIRFSEMYGFTMSYYHLLIPPEARERIRSIIADK----KREV------SRLIEEYRAGR 682
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
L +L+ E + LS+ +D ++ ++ Y + N ++ M
Sbjct: 683 LQPKPGKTVEETLEDEVIDL-------LSKRLLD-------EVADVITPYFTLANPVIVM 728
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
+ GS+GN + L Q + LG Q R + + GD A+ +
Sbjct: 729 ARTGSRGNPVNLTQMAALLGQQTVRGK---RLTRGYMDRSLPHFKPGDLGPEARGF---- 781
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRN 845
V F+ GL+P+E F H+ R+ G + RRL+ ++D+ DG+VR
Sbjct: 782 -VARGFVNGLSPIEMFFHAAGGREGLIDTAVRTSQSGYMQRRLINALQDVRVDIDGSVRT 840
Query: 846 AYGNQIVQFSYNIEGT 861
G +++QF Y +G
Sbjct: 841 TNG-EVIQFKYGEDGV 855
>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
Length = 880
Score = 196 bits (498), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 234/928 (25%), Positives = 387/928 (41%), Gaps = 161/928 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG-NT 64
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR----------------KER 109
C GHFG I+ ++H F+ + + L + C +C ++ K+R
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 110 QKGAGSSRKE-------QPRVCKYC--------VRNPAQWYPRMRFKLSSKDLSGKTAII 154
A E + +VC +C + P +Y + ++ S
Sbjct: 125 WPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPS------ 178
Query: 155 VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EE 213
+I E+L +K+P+ + +D + +P +L+ V + + PSI E
Sbjct: 179 -DIRERL----EKVPESDVEILGYDP----TTSRPEWMILTVLPVPPIT--IRPSIMIES 227
Query: 214 FILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHL 273
I ++D K + N R+ E A + + + D W + Y +I
Sbjct: 228 GIRAEDDLTHKLVDIVRINERLKESIDAGA-PQLIIEDLWDLLQYHVATYFDNEIP---- 282
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
L SK + R + ++ K+ N SG KR D R V++ D
Sbjct: 283 ---GLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPD 329
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRR 392
PNI + E+G+P +A L + ER+ WN E+L I+ G YV R G RR
Sbjct: 330 PNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG----RR 385
Query: 393 ID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
ID L G ++ R LTDGD+VL NR PS+H S++A V+VL
Sbjct: 386 IDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFR 444
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N L C P++ DFDGD ++ ++PQ+ A E E++ + K +I + G ++ QD ++
Sbjct: 445 LNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYIS 504
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A+LL + LL+ + QQ+ + + ++ ++GKQ+ S LP DF +
Sbjct: 505 GAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVVSAFLPKDFNFHG 564
Query: 561 PSK---------------DVYISGGKLISAEGSSWLRDYEGN-----LFQYLIKRYRDK- 599
+ D Y+ I EG + + GN + +LIK Y D+
Sbjct: 565 QANVSSGPRLCKNEDCPHDSYVVIKNGILLEG-VFDKKAIGNQQPESILHWLIKEYSDEY 623
Query: 600 ---VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
++D L+ V ++ ++G T+ L D+ L D++ +E + +
Sbjct: 624 GKWLMDNLF---RVFIRFVELQGFTMRLEDVSLG----------DDV---KKEIYNEIDR 667
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
++ VD N + K+ E + G L +L +D + ++A K
Sbjct: 668 AKVEVD---NLIQKYKNGE-LEPIPGRTL------EESLENYILDTLDKLRSTAGDIASK 717
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
Y N M + G++G++L + Q + LG Q R + D
Sbjct: 718 YLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDI 774
Query: 777 TECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMR 833
+ A+ +I S SF TGL P E F H+ R+ D A G + RRL+ +
Sbjct: 775 SPEARGFIYS-----SFRTGLKPTELFFHAAGGRE-GLVDTAVRTSQSGYMQRRLINALS 828
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
DL YDGTVR+ YG +++Q +Y +G
Sbjct: 829 DLRAEYDGTVRSLYG-EVIQVAYGDDGV 855
>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 196 bits (498), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 213/852 (25%), Positives = 363/852 (42%), Gaps = 127/852 (14%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFG I+ + + F+ +L +C C I ++ + ++ K
Sbjct: 1 CPGHFGHIELAKPMYNIGFIKTTLSVLRCVCHFCSKIL-----CPDATVQSLLKISK--- 52
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVK 188
P +R + + K SG I + + + K + + FD EE S +
Sbjct: 53 -------PTVRLRNAMKYCSGTKKICTGDNSCGNLQPKYTREGFRIRQQFDDNHEEYSKE 105
Query: 189 PNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-------LKCFPVTPNNHRVTEVPHA 241
+ LS ++V + K + S R+ L D + L PV P R + +
Sbjct: 106 NKKPSLSAEKVYDIFKRI--SDRDSLALGLDPRWVRPENLILTVLPVPPLQVRPSVMHGG 163
Query: 242 FSHEKKLFFDNWTRHLKKMVDYRG--RDIE----LSHLVQDCLKISKLHLDKSSRKDSAE 295
+E D+ T L +V RD+E ++HL+++ L + + H+ +
Sbjct: 164 LRNE-----DDLTNKLGDIVKNNNMLRDMEAQGTVAHLLREQLDLVQYHVATYMNNEIPG 218
Query: 296 VRQ---KKNIDISNSSGLRW------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQ 346
V Q + S G R+ ++ ++GKR D R V+T DPN+ L E+G+P
Sbjct: 219 VSQATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLLLHEVGVPYS 278
Query: 347 VAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG------LVRIRRIDALELG 399
+A+ L E + S+N+ + + E G Y+ R G V R LE+G
Sbjct: 279 IAKNLTFPETVTSYNYAEMRKLVENGPTEYPGAKYIERDDGQKVNLSYVADRTSTNLEIG 338
Query: 400 DIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLH 459
+ R + DGD VL NR PS+H S++ ++VLP S+ +N SP++ DFDGD ++
Sbjct: 339 FKVIRHIKDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTF-RLNLSVTSPYNADFDGDEMN 397
Query: 460 GYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ 519
++PQ+ G R E+ EL+ + +++ Q + ++ + QD+L L + + M
Sbjct: 398 LHVPQSHGTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIERDVMMN 457
Query: 520 LQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLPP----DFEYTFPSKD-------- 564
L M P I+K +W+GKQ+FS++LPP + T P ++
Sbjct: 458 LLMHVGDWDGVVPEPAIYK--PRPLWTGKQIFSLILPPVNLIRYNITHPDEEQEEISPGD 515
Query: 565 --VYISGGKLI------SAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWL 615
VYIS G+LI GSS L K KV + + +VL ++
Sbjct: 516 TKVYISQGQLICGIVDKKTVGSS-----ANGLIHVTWKECGPKVTAMMISQIQVLVNHYV 570
Query: 616 SVRGMTVSLSDLYLASHSCSRKI-----LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMS 670
RG ++ + D + S I +E+ +++AQ ++L++ +M
Sbjct: 571 LQRGQSIGIGDTIADDDTMSNVINTIKGAKEEVKMLIKKAQ----MKELVLLPGKG-MME 625
Query: 671 AKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKA 730
+ ++E + L G + +S A +Q S+ K N++ M A
Sbjct: 626 SFETEVNKVLNG-----ARDKSGASAQKSL------------------LKSNNIKRMVSA 662
Query: 731 GSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVE 790
GSKG+ + + Q C+G Q+ R + + D ++ + VE
Sbjct: 663 GSKGSFINISQICACVGQQNVEGK---RIAYGFNGRTLPHFATDDLGPESRGF-----VE 714
Query: 791 NSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYG 848
NS+L GL P E F H++ R+ G + RRL+ M D+ YDGTVRN+
Sbjct: 715 NSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDVMVRYDGTVRNS-A 773
Query: 849 NQIVQFSYNIEG 860
N +V+F Y +G
Sbjct: 774 NHVVEFLYGEDG 785
Score = 47.0 bits (110), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ ++I GI+A + L + IS G + HL I+ +
Sbjct: 1279 CHE---AVDHTRTMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHLSILVDV 1335
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + P ++ F ++AA G DNLQG + +
Sbjct: 1336 MTYRGHLMAITRHGI-----NRVDTGPLMKCSFEETTDILLEAATFGMRDNLQGVSENIV 1390
Query: 1245 WGKVPSVGTG 1254
G++ VGTG
Sbjct: 1391 LGQLAPVGTG 1400
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 228/918 (24%), Positives = 384/918 (41%), Gaps = 155/918 (16%)
Query: 41 VSEVTNPRLGLPNPTNECSSC-------GAKDRKACEGHFGFIKFPFTILHPYFLSDIAK 93
+ + +PR+G + C +C G K C GHFG ++ + H F+ ++ K
Sbjct: 62 IGGIGDPRMGTCDFRARCKTCDCTYSGSGGKVND-CPGHFGHVELARPMYHMGFIKEVLK 120
Query: 94 LLNSICPKCKTI----RKERQKGAGSSRKEQPR------------VCKYCVRNPAQWYPR 137
+L +C C + R R + A + + R +C+Y + +
Sbjct: 121 ILRCVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYGEEADME---K 177
Query: 138 MRFKLS----------SKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSV 187
MR L+ SK G + K K+ KL + F Q E+
Sbjct: 178 MREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKL------LVEFPEQMEDVPG 231
Query: 188 KPNRKV-LSCKQVSYLLKDVDPSIREEFILSKDAPF-------LKCFPVTPNNHRVTEVP 239
+RK L +V + K++ S + F L D + + PV P + R +
Sbjct: 232 SGDRKQNLPAAKVLSIFKNI--SDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAI 289
Query: 240 HAFSHEKKLFFDNWTRHLKKMVDYR------GRDIELSHLVQDCLKISKLHLDKSSRKDS 293
+ + D+ T +L +V R E SH+++ ++ + HL +
Sbjct: 290 DGMARGE----DDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQ 345
Query: 294 AEVRQKKNIDISNSSGLRW--------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPC 345
+ Q + LR I+ ++GKR D R V+T DPN+ + ++G+P
Sbjct: 346 PGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPR 405
Query: 346 QVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK-GGLVRIRRID-----ALEL 398
+A L + ER+ +N + I+ LE G Y+ R+ G + +R I AL+
Sbjct: 406 SIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKC 465
Query: 399 GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCL 458
G I+ R L D D+VL NR PS+H S+++ VKV S+ +N SP++ DFDGD +
Sbjct: 466 GWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTF-RLNLSVTSPYNADFDGDEM 524
Query: 459 HGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQ 518
+ ++PQ++ AR + EL+ + K +I QS R ++ + QDSL A + + L +
Sbjct: 525 NLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVM 584
Query: 519 QLQMFCPH---RFLSPDIFKISK------DSVWSGKQLFSMLLPP----DFEYTFPSKD- 564
L M+ + + +P I K +W+GKQ+FS ++P F T S +
Sbjct: 585 NLLMWVSNWDGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIVPAINFTGFSSTHKSSEK 644
Query: 565 ----------VYISGGKLISA------EGSSWLRDYEGNLFQY-LIKRYRDKVLDFLYAA 607
V I G+L++ GSS G L ++++ D+ L A
Sbjct: 645 FSDLSPIDSRVIIQQGELLAGIIDKKIIGSS-----AGGLVHITMLEKGPDETKRLLGAI 699
Query: 608 QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
Q+++ WL R TV +SD + + K ++D I Q L+V
Sbjct: 700 QQLVNNWLVGRSFTVGVSDTI--ADVSTLKTIVDII------TQAKVQVHDLVVRGQKGK 751
Query: 668 LMSAKDSESTRSLQGE---HLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSL 724
L + S +G L+ + ++ +Q S+D + N++
Sbjct: 752 LETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLD------------------ETNNI 793
Query: 725 LAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI 784
A +GSKG+ + + Q C+G Q+ R P+ + D ++ +
Sbjct: 794 KATVTSGSKGSFINISQIIACVGQQNVEG---KRIPYGFNHRTLPHYGKDDLGPESRGF- 849
Query: 785 PSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGT 842
VENS+L GL P E F H++ R+ G + RRL+ M + T YDGT
Sbjct: 850 ----VENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGT 905
Query: 843 VRNAYGNQIVQFSYNIEG 860
VRNA G +I+QF Y +G
Sbjct: 906 VRNAQG-EIIQFLYGEDG 922
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 228/970 (23%), Positives = 392/970 (40%), Gaps = 185/970 (19%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A ++
Sbjct: 14 VQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTC-AGNQT 72
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + PR+ +
Sbjct: 73 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PTNPRIKEVL 123
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDD---------------- 171
++ Q PR R GK I E +++ + K PDD
Sbjct: 124 AKSKGQ--PRKRLTFVYDLCKGKN--ICEGGDEMDIQ-KDNPDDPSTQQNRKQGHGGCGR 178
Query: 172 --------------YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILS 217
W + D Q+++ S L+ ++V + K + + E L
Sbjct: 179 YQPNIRRSGLDLTAEWKHVNEDNQEKKIS-------LTAERVWEIFKHI--TDEECCALG 229
Query: 218 KDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE- 269
D F + PV P + R V + + + D+ T L ++ I
Sbjct: 230 MDPKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLSDIIKANNELIRN 285
Query: 270 -----LSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK---- 320
+H++ + +K+ + H+ D + + + L+ IK + GK
Sbjct: 286 EQAGGAAHVIAENIKMLQFHVATLVDNDMPGLPRAMQ---KSGKPLKAIKARLKGKEGRI 342
Query: 321 -------RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL 373
R D R V+T DPN+++ ++G+P +A+ + E + +N +++ +
Sbjct: 343 RGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGN 402
Query: 374 LE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 403 SQYPGAKYIVRDNG----ERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHK 458
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q+
Sbjct: 459 MSMMGHRVKVLPWST-FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQI 517
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP-HRFLSPDIFKISKDSV 541
I Q+ + ++ + QD+LTA + + V L QM L MF P + P + +
Sbjct: 518 ITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWNGVMPQPAIMKPKPL 577
Query: 542 WSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWL 581
W+GKQ+FS+++P PD E P K + K++ G L
Sbjct: 578 WTGKQVFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTL 637
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L +V Y Q V+ WL + G ++ + D +
Sbjct: 638 GTSAGSLLHICFLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL----- 692
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
EI +++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 693 -EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARD 742
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P F
Sbjct: 743 KT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGF 794
Query: 758 R---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
R PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 795 RKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG 838
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E +
Sbjct: 839 LIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQN 897
Query: 871 QPVGSLSACA 880
P LS A
Sbjct: 898 LPTIKLSNKA 907
>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
Length = 880
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 233/928 (25%), Positives = 384/928 (41%), Gaps = 161/928 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG-NT 64
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR----------------KER 109
C GHFG I+ ++H F+ + + L + C +C ++ K+R
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 110 QKGAGSSRKE-------QPRVCKYC--------VRNPAQWYPRMRFKLSSKDLSGKTAII 154
A E + +VC +C + P +Y + ++ S
Sbjct: 125 WPSAAKRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPS------ 178
Query: 155 VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EE 213
+I E+L +K+P+ + +D + +P +L+ V + + PSI E
Sbjct: 179 -DIRERL----EKVPESDVEILGYDP----TTSRPEWMILTVLPVPPIT--IRPSIMIES 227
Query: 214 FILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHL 273
I ++D K + N R+ E A + + + D W + Y +I
Sbjct: 228 GIRAEDDLTHKLVDIVRINERLKESIDAGA-PQLIIEDLWDLLQYHVATYFDNEIP---- 282
Query: 274 VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGD 333
L SK + R + ++ K+ N SG KR D R V++ D
Sbjct: 283 ---GLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPD 329
Query: 334 PNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRR 392
PNI + E+G+P +A L + ER+ WN E+L I+ G YV R G RR
Sbjct: 330 PNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG----RR 385
Query: 393 ID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
ID L G ++ R LTDGD+VL NR PS+H S++A V+VL
Sbjct: 386 IDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHRISMMAHRVRVLK-GLTFR 444
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N L C P++ DFDGD ++ ++PQ+ A E E++ + K +I + G ++ QD ++
Sbjct: 445 LNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYIS 504
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF 560
A+LL + LL+ + QQ+ + + ++ ++GKQ+ S LP DF +
Sbjct: 505 GAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQIVSAFLPKDFNFHG 564
Query: 561 PSK---------------DVYISGGKLISAEGSSWLRDYEGN-----LFQYLIKRYRDK- 599
+ D Y+ I EG + + GN + +LIK Y D+
Sbjct: 565 QANVSSGPRLCKNEDCPHDSYVVIKNGILLEG-VFDKKAIGNQQPESILHWLIKEYSDEY 623
Query: 600 ---VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
++D L+ V ++ ++G T+ L D+ L + EI+ + A+ N
Sbjct: 624 GKWLMDNLF---RVFIRFVELQGFTMRLEDVSLGDD------VKKEIYNEIDRAKVEVN- 673
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
N + K+ E + G L +L +D + ++A K
Sbjct: 674 ---------NLIQKYKNGE-LEPIPGRTL------EESLENYILDTLDKLRSTAGDIASK 717
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
Y N M + G++G++L + Q + LG Q R + D
Sbjct: 718 YLDPFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDI 774
Query: 777 TECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMR 833
+ A+ +I S SF TGL P E F H+ R+ D A G + RRL+ +
Sbjct: 775 SPEARGFIYS-----SFRTGLKPTELFFHAAGGRE-GLVDTAVRTSQSGYMQRRLINALS 828
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
DL YDGTVR+ Y ++++Q +Y +G
Sbjct: 829 DLRAEYDGTVRSLY-SEVIQVAYGDDGV 855
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 159/577 (27%), Positives = 266/577 (46%), Gaps = 77/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 344 LMGKRVDFSARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNIHKLQELVRNGPNEH 403
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R +TDGD+V+ NR PS+H S+
Sbjct: 404 PGAKYIIRDTG----ERIDLRYHKRAGDIPLQYGWRVERHITDGDVVIFNRQPSLHKMSM 459
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ IN P++ DFDGD ++ ++PQ+ R E+ E+ + KQ+++
Sbjct: 460 MGHRVKVMPYSTF-RINLSVTPPYNADFDGDEMNLHVPQSEETRAEIIEICMVPKQIVSP 518
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L L LS Q+ + ++ P P I K ++W
Sbjct: 519 QSNKPVMGIVQDTLAGVKKLTRRDNFLSKDQVMNILLWVPEWDGNMPPPAIIK--PKAMW 576
Query: 543 SGKQLFSMLLPPDFEY----------TFPSKDVYISGGKLI------SAEGSSWLRDYEG 586
+GKQ+ SM++P + T + + G++I G+S +G
Sbjct: 577 TGKQILSMVIPKGINFIRDDEKQTPMTPDDTGMMLENGEIIYGIVDKKTVGAS-----QG 631
Query: 587 NLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
L +++ +V F Q V+ WL G ++ + D +++ M +I
Sbjct: 632 GLVHTIMREKGPEVCRVFFNGIQMVVNYWLLHNGFSIGIGDTIADANT------MRDITN 685
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+ EA+ Q++++D+ N L E +L+ S+E + S AL+QA A +
Sbjct: 686 TIAEAK--AKVQEIILDAQQNRL----QVEPGMTLRE---SFESKVSRALNQARDTAGRS 736
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
+++ N++ M AGSKG+ + + Q S C+G Q R P+
Sbjct: 737 AQMSLKD--------SNNVKQMVTAGSKGSFINISQMSACVGQQIVEGK---RIPYGFKY 785
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + + +I ENS+L GL P E F H++ R+ G
Sbjct: 786 RTLPHFTKDDYSPESGGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 840
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ I+Q Y +G
Sbjct: 841 IQRRLVKALEDVMVKYDGTVRNSLGD-IIQLVYGEDG 876
Score = 45.4 bits (106), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG + +C +CG + C GHFG I+ + H FL I K+L +C C +
Sbjct: 58 DPRLGTIDRNFKCQTCG-ESMAECPGHFGHIELAKPVFHIGFLMKIKKILECVCLNCGKL 116
Query: 106 RKE 108
+ +
Sbjct: 117 KAD 119
Score = 45.1 bits (105), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ +D R++ ++ GI+A L L + I G + HL ++A+T+++
Sbjct: 1328 VENVDPRRTYSNSFVEILQVLGIEATRAALLKELRNVIEFDGSYVNYRHLSLLADTMTSR 1387
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + + G + R + V ++ F ++AA AG +D+ +G + + G++
Sbjct: 1388 GHLMAITRHG--INRAETGV---LMRCSFEETVEILMEAAAAGEMDDCRGISENIMLGQL 1442
Query: 1249 PSVGTGGHFDII 1260
+GT G FD+I
Sbjct: 1443 APLGT-GEFDVI 1453
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 163/578 (28%), Positives = 271/578 (46%), Gaps = 80/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + + +
Sbjct: 348 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNITYLQELVRNGPTVY 407
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 408 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 467
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 468 RLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 526
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L Q+Q + ++ P +P I K +W+GKQ+
Sbjct: 527 VMGIVQDTLCGVRKFTLRDTFLEWSQVQNILLWVPDWDGSVPTPAIIK--PKPLWTGKQI 584
Query: 548 FSMLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQY 591
SM +P PD + P D + I G ++ G+S +G L
Sbjct: 585 LSMCIPRGINIFRSPDPKSNNPVFDDGMMIENGDIVFGIVEKKTVGAS-----QGGLVHV 639
Query: 592 LIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ + + L+ Q+V+ WL G ++ + D +A H + + D+I +E
Sbjct: 640 VFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGIGDT-IADHK-TMTYIQDQIAMRKQEV 697
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+VD + + A + R S+EK+ L+ A + ++
Sbjct: 698 LK-------VVDDAYHARLKAAPGMTIRE------SFEKRVERELNLARDQSGQY----- 739
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
A K +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 740 ---AQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHRTLPH--- 793
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 794 ------FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 842
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 843 YIQRRLVKALEDVSVCYDGTVRNSLGD-LIQFVYGEDG 879
Score = 48.1 bits (113), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G + +C +CG + C GHFG I+ + HP F+ + K+L IC C +
Sbjct: 57 DPRMGTIDRNFKCQTCG-EGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRL 115
Query: 106 RKE 108
+ +
Sbjct: 116 KAD 118
>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
Length = 1007
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 157/580 (27%), Positives = 276/580 (47%), Gaps = 70/580 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+TGDP + + E+G+P +A L E + S+N+E++ +
Sbjct: 261 IRGNLMGKRVDFSARTVITGDPMLSINEVGVPFSIARNLTFPEMVTSYNFEKMQNLVRNG 320
Query: 373 LLEK-GELYVCRKGGL---VRIRRID---ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G YV R G+ +R RR AL++G + R + +GD+V+ NR PS+H S+
Sbjct: 321 PTQHPGAKYVIRDDGVRIDLRHRRATGDMALQVGFCVERHIDNGDVVIFNRQPSLHKMSM 380
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+VLP S+ +N SP++ DFDGD ++ ++PQ+ AR E+ EL+ + KQ+++
Sbjct: 381 MGHHVRVLPFSTF-RLNLSVTSPYNADFDGDEMNMHVPQSHEARSEVLELMMVSKQIVSP 439
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP--HRFLSPDIFKISKDSVWS 543
Q + ++ + QDSL + LS +Q L ++ P + ++ P + +W+
Sbjct: 440 QGNKPVMGIVQDSLCGVRKFTKRDCFLSKEFVQNLVLWIPDWNGYIPPPCIQFPV-PLWT 498
Query: 544 GKQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISA-EGSSWLRDYEGN 587
GKQL S+L+P PD E ++ S V I G++I+ + G
Sbjct: 499 GKQLLSLLIPTGINMTTFHAAHPDDEKSYISPGDTRVEIVNGEIIAGIICKRTVGAAAGG 558
Query: 588 LFQYLIKRYRD-KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + FL Q ++ W ++++ D+ +A +K+
Sbjct: 559 LIHTIYNELGEVPTTRFLNGTQTLVNYWFMQNSFSIAIGDM-IADRETMKKV-------- 609
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSE--STRSLQGEHL--SYEKQRSAALSQASVDA 702
Q + D+ + ++++ + + L G + ++E + + AL++A DA
Sbjct: 610 ----------NQSIADAKIEVARCIEEAQRGTLQPLPGLTVREAFESRVNQALNKARDDA 659
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
K +A + + N++ M +GSKG+ + + Q + C+G Q+ S R P
Sbjct: 660 GK--------MAERSLPEYNNIKQMVVSGSKGSFVNISQMAACVGQQNV---ESARIPFG 708
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D ++ + VENS+L GL P E F H++ R+
Sbjct: 709 FQNRTLPHFTKYDQGPVSRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 763
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G QIVQF Y +G
Sbjct: 764 TGYIQRRLVKALEDVMVNYDGTVRNSLG-QIVQFCYGEDG 802
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 217/940 (23%), Positives = 387/940 (41%), Gaps = 163/940 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G V + +PR G+ + + C +C A +
Sbjct: 18 MQFGILSPDEIRRMSVTEGGIKYPETTEGGRPKVGGLMDPRQGVIDRVSRCQTC-AGNMS 76
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG + + H FL+ K+L C P IR K G R+
Sbjct: 77 ECPGHFGHVDLAKPVYHVGFLTKTIKVLRCFCFFCSKLLVDPAHPKIRDIVSKSKGKGRQ 136
Query: 119 EQPRVCKYCVR----------NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL 168
V C + Q P K K + K+ + L
Sbjct: 137 RLAHVYDLCKGKNICEGGDEIDKEQSEPGAEEKKVRKQQASSHGGCGRYQPKIRRTGLTL 196
Query: 169 PDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF------ 222
+ W + D+Q + + VLS ++ + K + S E I+ D +
Sbjct: 197 MAE-WKHVNEDSQDK-------KIVLSAERALEIFKRI--SDEESNIIGMDPKWARPDWM 246
Query: 223 -LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHLVQ 275
++ PV P + R V + + + D+ T L ++ + + +H++
Sbjct: 247 IIQVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLADIIKINNQLKRNELNGAAAHILD 302
Query: 276 DCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDD 324
+ K+ + H L ++ +K ++ K + G I+ ++GKR D
Sbjct: 303 EDTKMLQFHVATLVDNEMPGLPRAVQKSGRPLKSLKQ-RLKGKEGR--IRGNLMGKRVDF 359
Query: 325 CFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCR 383
R V+T DP + + ++G+P +A+ L E + +N + LS + + G Y+ R
Sbjct: 360 SGRTVITPDPMLAITQVGVPRSIAQNLTFPEIVTPFNIDSLSELVRRGANQYPGAKYIIR 419
Query: 384 KGGL---VRIRRIDA---LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS 437
G +R D+ L+ G + R + + D ++ NR P++H S++ VK+LP S+
Sbjct: 420 DNGDRVDLRYHPKDSDLHLQCGYKVERHMQNNDYIVFNRQPTLHKMSMMCHRVKILPWST 479
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
+N +P++ DFDGD ++ ++ Q++ R E+ +L A+++ +I Q+ R ++ + QD
Sbjct: 480 F-RLNLSVTTPYNADFDGDEMNLHLAQSLETRAEINQLAAVNRMIITPQANRPVMGIVQD 538
Query: 498 SLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP- 553
+LTA + + V L M L M+ P R P I K +W+GKQ+FS+++P
Sbjct: 539 TLTAVRKMTKRDVFLEKRDMMNLLMYLPTWNGRMPQPAILK--PKPLWTGKQVFSLIIPG 596
Query: 554 -----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL-I 593
PD E P K + K++ +G L G+L + +
Sbjct: 597 RVNCIRTHSTHPDEEDKGPYKWISPGDTKVLVEDGELICGILCKKTLGASSGSLMHVVFL 656
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ ++ DF Q V+ WL + G ++ + D + S +I +++A+
Sbjct: 657 EQGFEQAGDFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYS------DIQNAIKKAK-- 708
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVFWDI 710
+ ++ +H + L + ++ + + L+ + ++ + +Q S+ F
Sbjct: 709 LDVIDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSTAQKSLSEF------- 761
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELS 764
NS AM AGSKGN + + Q C+G Q+ P FR PH +
Sbjct: 762 -----------NSFKAMVVAGSKGNKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK 810
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + VENS+L GL P E F H++ R+
Sbjct: 811 ----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAE 854
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRLM M + YDGTVRN Q++Q +Y +G
Sbjct: 855 TGYIQRRLMKAMESVMVKYDGTVRNQI-EQLIQLTYGEDG 893
>gi|397135874|gb|AFO11432.1| RNA polymerase I, partial [Hyphopichia burtonii]
Length = 872
Score = 195 bits (496), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 159/570 (27%), Positives = 270/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N +L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHKLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSA 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLYWIPNWDGVIPPPAIVKPKPLWSG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D + KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDDGKNLLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L++A Q+V+ WL G ++ + D S + M + ++EA+D
Sbjct: 448 REKGSQVCAQLFSAIQKVVNFWLLHNGFSIGIGDTIADSET------MRTVTTTIQEAKD 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L D E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILDAQSNKL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDG 685
>gi|115444283|ref|NP_001045921.1| Os02g0152800 [Oryza sativa Japonica Group]
gi|113535452|dbj|BAF07835.1| Os02g0152800, partial [Oryza sativa Japonica Group]
Length = 488
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 149/505 (29%), Positives = 239/505 (47%), Gaps = 49/505 (9%)
Query: 7 EEGLEVPSGILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAK 64
+ + V G + I L +ST+ E S+ + + S++ NP LGLP T +C SCGA
Sbjct: 5 QSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCESCGAS 64
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP ++++ ++LN +C KC ++K + K C
Sbjct: 65 ENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSC 124
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEE 184
YC PA LS K++ KTA E K + + W F+ D
Sbjct: 125 YYCRDLPA---------LSLKEI--KTADGAFRLELKMPPRKFMTEGSWNFL--DKYGFH 171
Query: 185 NSVKPNRKVLSCKQVSYLLKDVDPSIREEFI----LSKDAPFLKCFPVTPNNHRVTEVPH 240
+ + + L ++ +LK + + + +++ +K PV PN +P
Sbjct: 172 HGGTSHCRTLLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPN---CLYIPE 228
Query: 241 AFSHEKKLFFDNWTRHLKKMVD--------YRGRDIELSHLVQDC---LKISK-LHLDKS 288
+ + +D LKK++ G SH V+ C L I++ +HL +
Sbjct: 229 FTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGT 288
Query: 289 SRKDSAEVRQ-KKNIDISNSSGLRWI---KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIP 344
+R ++ + D S S +W+ + + + K + R V+TGDP I + IG+P
Sbjct: 289 TRGPQDNTKRFAISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLP 348
Query: 345 CQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDA-----LELG 399
+VA+R+ E++ N RL +++KG R G + + L++G
Sbjct: 349 SEVAKRITFEEQVTDINLNRLQ-----EIVDKGLCLTYRDGQATYAITVGSKGHTTLKVG 403
Query: 400 DIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLH 459
I R + DGD+V +NRPPS H HSL A V V V INPL C+PF DFDGDC+H
Sbjct: 404 QTISRRIVDGDVVFLNRPPSTHKHSLQAFRVYVHE-DHTVKINPLICAPFAADFDGDCVH 462
Query: 460 GYIPQAIGARVELTELVALDKQLIN 484
Y PQ++ A+ E EL +++KQL +
Sbjct: 463 IYYPQSLAAKAEALELFSVEKQLTS 487
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 226/959 (23%), Positives = 388/959 (40%), Gaps = 172/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ T+ C +C A +
Sbjct: 15 VQFGILSPDEIRRMSVTEGGIQFAETMEGGRPKLCGLMDPRQGVIERTSRCQTC-AGNMT 73
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 74 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEIVMKSKGQPRK 133
Query: 119 EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWG-FIP 177
V C K G + + D ++ +KK G + P
Sbjct: 134 RLAYVYDLCK--------------GKKICEGGEDMDLTKDGGVADPSKKQGHGGCGHYQP 179
Query: 178 ---------FDAQQEENSVKPNRKV-LSCKQVSYLLKDVDPSIREEFILSKDAPF----- 222
+E N +K+ +S ++V +LK + + E ++L D F
Sbjct: 180 SIRRTGLDLMAEWKEVNDENQEKKMQVSAERVYEILKHI--TDEECYVLGMDPKFARPDW 237
Query: 223 --LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG------RDIELSHLV 274
+ PV P R V + + D+ T L ++ + +H++
Sbjct: 238 MIITVLPVPPLAVRPAVVMFGATKNQ----DDLTHKLSDIIKANNELKKNEQTGAAAHVI 293
Query: 275 QDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK-----------RND 323
+ +K+ + H+ D + + + L+ IK + GK R D
Sbjct: 294 AENIKMLQFHVATLVDNDMPGMPKAMQ---KSGKPLKAIKARLKGKEGRIRGNLMGKRVD 350
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVC 382
R V+T DPN+++ ++G+P VA+ + E + +N +R+ + + G Y+
Sbjct: 351 FSARTVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIV 410
Query: 383 RKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
R G RID L+ G + R L D D+V+ NR P++H S++ VKV
Sbjct: 411 RDNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKV 466
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
LP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 467 LPWST-FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVM 525
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFS 549
+ QD+LTA + + V + QM L MF P + P I K +W+GKQ+F+
Sbjct: 526 GIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFLPTWDGKMPQPCILK--PKPLWTGKQIFT 583
Query: 550 MLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLF 589
+++P PD E P K + K++ G L G+L
Sbjct: 584 LIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLL 643
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ ++ Y Q V+ WL + G ++ + D + + EI +R
Sbjct: 644 HIVFLELGHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYA------EIQRAIR 697
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A++ + ++ +H N + + R ++E Q + L+ A
Sbjct: 698 KAKE--DVIGVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------ 742
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 --GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 800
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 801 IK----------------DDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKT 844
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 845 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGEAVEFQNLPTIKLS 902
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 227/963 (23%), Positives = 395/963 (41%), Gaps = 170/963 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G + + +PR G+ + + C +C A +
Sbjct: 17 VQFGIISPDEIRRMSVTDGGIRFSETMEGGRPKLGGLMDPRQGVIDRLSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQPRK 135
Query: 119 EQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWG-FI 176
V C +N + M + D G ++N+K G +
Sbjct: 136 RLTFVYDLCKGKNICEGGDEMDIQKDGVDDPGG-----------GQQNRKAGHGGCGRYQ 184
Query: 177 P------FDAQQEENSVKPNRK----VLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
P D E V + + LS ++V + K + + E FI+ D + +
Sbjct: 185 PSIRRAGLDLTAEWKHVNEDSQEKKIALSAERVWEIFKHI--TDEECFIMGMDPKYARPD 242
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHL 273
PV P + R V + + + D+ T L ++ + +H+
Sbjct: 243 WMIVTVLPVPPLSVRPAVVMYGSARNQ----DDLTHKLSDIIKSNNELLRNEQAGAAAHV 298
Query: 274 VQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRN 322
+ + +K+ + H L ++ +K ++ K + G I+ ++GKR
Sbjct: 299 LSENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIK-ARLKGKEGR--IRGNLMGKRV 355
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYV 381
D R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+
Sbjct: 356 DFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYI 415
Query: 382 CRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
R G RID L+ G + R + DGD+V+ NR P++H S++ VK
Sbjct: 416 VRDNG----ERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVK 471
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
VLP S+ +N SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + +
Sbjct: 472 VLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPV 530
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLF 548
+ + QD+LTA + + V L QM + M P + P I K +W+GKQ+F
Sbjct: 531 MGIVQDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILK--PKPLWTGKQVF 588
Query: 549 SMLLP------------PDFEYTFP-------SKDVYISGGKLISA-EGSSWLRDYEGNL 588
S+++P PD E P V + G+L+ L G+L
Sbjct: 589 SLIIPGNVNMIRTHSTHPDDEDDGPYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSL 648
Query: 589 FQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ +V Y Q V+ WL + G ++ + D + EI +
Sbjct: 649 LHICMLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL------EIQKAI 702
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
++A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 703 KKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT----- 748
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 749 ---GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 805
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 806 FIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 849
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E + P LS
Sbjct: 850 TAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQNLPTIKLS 908
Query: 878 ACA 880
A
Sbjct: 909 NKA 911
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 156/577 (27%), Positives = 273/577 (47%), Gaps = 64/577 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +R+ I
Sbjct: 342 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRNG 401
Query: 373 LLEK-GELYVCRKGG----LVRIRRID--ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R+ G L +++I LE G + R + DGD+V+ NR PS+H S+
Sbjct: 402 PNEHPGAKYIIREDGTRFDLRFVKKITDTHLECGYKVERHIQDGDVVIFNRQPSLHKMSM 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +KV+P S+ +N SP++ DFDGD ++ ++PQ++ R E+ E++ + +Q+++
Sbjct: 462 MGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSLETRAEIIEIMMVPRQIVSP 520
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+L + + + M + M+ P + P I+K K +W
Sbjct: 521 QSNRPVMGIVQDTLLGSMKFTKRDTFVERDLMMNILMWLPSWDGKIPPPAIWKPKK--LW 578
Query: 543 SGKQLFSMLLP----PDFEYTFPSKD-----------VYISGGKLISA-EGSSWLRDYEG 586
+GKQLFS+++P F T K+ V I G+L++ L G
Sbjct: 579 TGKQLFSLIIPNINLQRFGSTHSDKEKEKSEMAADTVVIIDQGELLTGILCKRSLGAANG 638
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
++ ++ + D F+ Q V+ WL G TV + D + + M ++
Sbjct: 639 SIIHVVMNEHGHDSCRLFIDQTQTVVNHWLINHGFTVGIGD------TIADAATMSKVTS 692
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+ A+ ++L++ + N + + RS+ S+EK+ + L+ A DA
Sbjct: 693 AIANAK--TQVKELIIKAQSNQF----ECQPGRSMLE---SFEKEVNRVLNTARDDAGTS 743
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
+Q + N++ AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 744 AQRSLQ--------ESNNVKAMVNAGSKGSFINISQMMACVGQQNVEGK---RVPFGFQN 792
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGT 823
D ++ + VENS+L GL P E F H++ R+ G
Sbjct: 793 RTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 847
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M D+ YD TVRN+ G+ ++QF+Y +G
Sbjct: 848 IQRRLVKAMEDVSVKYDATVRNSLGD-VIQFAYGEDG 883
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 26/194 (13%)
Query: 1066 FLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDC 1125
L + V+ G R IKKV + HDD +RV+ +G W L D
Sbjct: 1286 MLSEMVLCGIRGIKKVFM----------RHDDQ-----VRVNENGAYFSKKEW-VLDTDG 1329
Query: 1126 HQIMDM-----IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLI 1180
++++ +D +R+ ++I GI+A L L + IS G + HL I
Sbjct: 1330 VNLLEVMSHPDVDHSRTVSNDIIEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAI 1389
Query: 1181 VANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSV 1240
+A+ ++ G + ++ G+ + S P ++ F + AA D+++G
Sbjct: 1390 LADVMTYRGHLMAISRHGI-----NRVESGPLMRCSFEETVEILMDAAMFSETDDVKGVT 1444
Query: 1241 DALGWGKVPSVGTG 1254
+ + G++P +GTG
Sbjct: 1445 ENIILGQLPPLGTG 1458
Score = 43.5 bits (101), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
+ + +P +G + T +C++C C GHFG I+ + H F++ + K+L +C
Sbjct: 48 IGGLVDPHMGTIDKTQKCATCSGT-MAECPGHFGHIELAKPVFHIGFINTVLKILKCVCY 106
Query: 101 KC 102
C
Sbjct: 107 HC 108
>gi|70606495|ref|YP_255365.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449066707|ref|YP_007433789.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449068981|ref|YP_007436062.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920763|sp|P11512.2|RPOA1_SULAC RecName: Full=DNA-directed RNA polymerase subunit A'
gi|68567143|gb|AAY80072.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449035215|gb|AGE70641.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449037489|gb|AGE72914.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
Length = 880
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 226/913 (24%), Positives = 391/913 (42%), Gaps = 137/913 (15%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAK 64
I+ G+ G+ + E ++SV I G E V +P+LG+ P +C CG
Sbjct: 5 IIRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVCG-N 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ-------------- 110
C GHFG I+ ++H ++ I L S C +C I+ + Q
Sbjct: 64 TLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKL 123
Query: 111 KGAGSSRKEQPRVCKYCVRN---PAQWYPRMRFKLSSK---DLSGKTAIIVEIDEKLSKK 164
+ ++R+ + K ++N P + + KL + +I+ ++ +
Sbjct: 124 RWPSAARRLVEYIKKISIKNLECPHCGEKQFKIKLEKPYNFNEERNGSIVKLSPSEIRDR 183
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFL 223
+++PD + +D + S +P +L+ V + + PSI E I ++D
Sbjct: 184 LERIPDSDVELLGYDPK----SSRPEWMILTVLPVPPI--TIRPSITIESGIRAEDDLTH 237
Query: 224 KCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKL 283
K + N R+ E A + + + D W + Y D E+ L + +
Sbjct: 238 KLVDIIRLNERLKESIEAGA-PQLIIEDLWDLLQYHVATYF--DNEIPGLPPAKHRSGRP 294
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
+ R E R + N+ GKR D R V++ DPN+ + E+GI
Sbjct: 295 LRTLAQRLKGKEGRFRGNLS---------------GKRVDFSARTVISPDPNLSIDEVGI 339
Query: 344 PCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID-------- 394
P +A L + ER+ + N ER+ I+ G YV + G RRID
Sbjct: 340 PYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDG----RRIDLRYVKDRK 395
Query: 395 ----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
++ G ++ R L DGD+VL NR PS+H S++A V+VLP +N L C P++
Sbjct: 396 ELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLP-GRTFRLNLLDCPPYN 454
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
DFDGD ++ ++PQ+ A E EL+ + K +I + G ++ GQD ++ A+LL +
Sbjct: 455 ADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTT 514
Query: 511 LLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPS------ 562
LL+ ++ + P I ++ ++GKQ+ S+ LP DF + P+
Sbjct: 515 LLTVEEVATILGVTDFVGELGEPAI--LAPKPYYTGKQVISLFLPKDFNFHGPANISKGP 572
Query: 563 ---KD--------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRDKVLDFLY-AAQ 608
KD + I G L+ + + ++ + I+ Y + +L
Sbjct: 573 RACKDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVF 632
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHM-NF 667
++ +L +RG T++L D+ + + +EI ++E + Q VD ++ F
Sbjct: 633 KMFIRFLEMRGFTMTLEDITIPDEA------QNEITTKIKEG-----YSQ--VDEYIRKF 679
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
+ R+++ SY ++D + V +I A KY N++ M
Sbjct: 680 NEGQLEPIPGRTIEESLESY--------ILDTLDKLRKVAGEI---ATKYLDPFNNVYIM 728
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
G++G+ L + Q + LG Q R E + + + + GD A+ +
Sbjct: 729 AITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLF---KYGDIAPEARGF---- 781
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVR 844
V+NSF+ GL+P E F H+ R+ D A G + RRL+ + DL YDGTVR
Sbjct: 782 -VKNSFMRGLSPYEMFFHAAGGRE-GLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVR 839
Query: 845 NAYGNQIVQFSYN 857
+ YG+ IVQ Y
Sbjct: 840 SLYGD-IVQVVYG 851
>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
Length = 1017
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 209/868 (24%), Positives = 367/868 (42%), Gaps = 135/868 (15%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC-KTIRKERQ---KGAGSSRKEQPR-- 122
C GHFG I+ + H F++ + K+L S+C C K + ER K A + + + R
Sbjct: 2 CPGHFGHIELAVPVFHAGFVTKVKKILESVCHNCGKLLDDERNPHFKAACNIKDPKRRFD 61
Query: 123 ----------VCKYCVRNPAQ----WYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL 168
VC+ +++ P+ + K+ G + D KL
Sbjct: 62 AIHKLCKPKMVCEPDIQDDGNDDFGGNPKAKLKVKGHGGCGNIQPEIRRDALRLTGTWKL 121
Query: 169 PDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF------ 222
P +++E P +K+++ + + +++ + R +L +A +
Sbjct: 122 PK---------GEEQEEDKGPEKKIITPQMALNVFRNI--TDRGLTLLGSNADYARPEWL 170
Query: 223 -LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG------RDIELSHLVQ 275
L PV P R + S + D+ T L ++ ++ H+V
Sbjct: 171 ILTVLPVPPPAVRPSISVDGTSQGMR-SEDDLTYKLSDIIRANSNVKRCEQEGSPQHVVD 229
Query: 276 DCLKISKLHLDKSSRKDSAEV--------RQKKNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ + + + H+ D A + R K I S ++ ++GKR D R
Sbjct: 230 EFVSLLQYHVATYMDNDIAGLPKAQQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDFSAR 289
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKGELYVCRKGG 386
V+TGDPN+ L E+G+P +A L E +NS+N ++ + + + G YV R G
Sbjct: 290 TVITGDPNLSLDEVGVPRSIARTLTFPETVNSYNINKMHELVRNGPDIHPGAKYVIRDNG 349
Query: 387 LVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L++G + R + DGD ++ NR PS+H S + V+V+P S
Sbjct: 350 ----ERIDLRHHKQPQNIQLQVGWKVERHIVDGDYIIFNRQPSLHKESRMGHRVRVMPYS 405
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N SP++ DFDGD ++ ++PQ+ R E+ L + +++ Q L+ + Q
Sbjct: 406 T-FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQ 464
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+L + + V L+ Q+ + ++ P P I K S W+GKQ+ SM L
Sbjct: 465 DTLCGIYKICRRDVFLTQEQVMNVLLWVPSWDGVLPQPAIVKPSPR--WTGKQIISMALV 522
Query: 554 PDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI--KRYRDKVLD 602
P E P D + I G+LI S G + I +R + +
Sbjct: 523 PGLNLVRKGEEGDCPVNDDGLLIDNGELIYGLFSKKSVGATGGGVIHTIFNERGPEAAVA 582
Query: 603 FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVD 662
F+ AQ ++ WL G ++ + D ++ I +++ +EA +Q+
Sbjct: 583 FINGAQTIVNYWLLHNGFSIGIGDTVPDDNTT---IGINQAVAEQKEA-----VRQITHS 634
Query: 663 SHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
+ N L +L G ++ ++E + S AL+ A +A +++L
Sbjct: 635 ATGNEL---------EALPGMNIRETFESKVSKALNSARDNAGSRTEKSLKDL------- 678
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSCAAWNRLRAG 774
N+ + M +AGSKG+ + + Q + +G Q P F++ PH
Sbjct: 679 -NNAIQMARAGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---------FTKD 728
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + ++ + VEN +L GL P E F H++ R+ G + RRL+ +
Sbjct: 729 DYSPESRGF-----VENPYLQGLTPAEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 783
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 784 EDVMAKYDGTVRNSLGD-IVQFVYGEDG 810
>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
Length = 1612
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 233/941 (24%), Positives = 400/941 (42%), Gaps = 176/941 (18%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNP---------TNE---- 57
E+ +T I G+ + E K SV+++ + N G P P T E
Sbjct: 4 EIVKKRITSIQFGLFSPEEIRKASVVQVIHPETMEN---GFPKPGGLIDLKMGTTERAFL 60
Query: 58 CSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKER-------- 109
CSSC KD +C GHFG I+ + H ++S I K+L +C C I+ ++
Sbjct: 61 CSSC-EKDNFSCPGHFGHIELTKPMFHVGYMSKIKKILECVCYYCSKIKIDKKHLKKDLN 119
Query: 110 -----------------QKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTA 152
+ G +QP + K + + F +D GK
Sbjct: 120 FVWNSCKTKSVCEGELTEAGFSGCGNKQPVIKK-------EGMGLVAFMKGEEDSDGK-- 170
Query: 153 IIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIRE 212
++ E++ KK+ D+ ++ FD + KP+ V++ V V PSI
Sbjct: 171 -VILNGERVHNILKKISDEDSTYLGFDTKYS----KPDWLVITVLLVP--PPSVRPSIVM 223
Query: 213 EFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR-DIELS 271
E +L + H++ ++ A ++ KK + H+ + DY ++
Sbjct: 224 EGMLRAEDDL---------THKLADIVKANTYLKKYELEGAPGHVIR--DYEQLLQFHIA 272
Query: 272 HLVQDCLKISKLHLDKSSR---KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRM 328
++ + L L KS R SA ++ K+ ++ ++GKR D R
Sbjct: 273 TMIDNDLSGQPQALQKSGRPIKSISARLKGKEG----------RVRGNLMGKRVDFSARS 322
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGL 387
V+T D NI L+E+G+P ++A+ E + +N ERL+ +S E G YV R G
Sbjct: 323 VITPDANISLEEVGVPLEIAKIHTFPETITPYNIERLTRLVSNGPNEYPGANYVIRSDG- 381
Query: 388 VRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVV 439
+RID LE G I+ R + +GD+VL NR PS+H S++ V+V+
Sbjct: 382 ---QRIDLNFNRGDIKLEEGYIVERHMQNGDVVLFNRQPSLHKMSMMGHFVRVME-GKTF 437
Query: 440 TINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSL 499
+N C SP++ DFDGD ++ ++PQ+ + EL EL + KQ+++ QS R ++ + QDSL
Sbjct: 438 RLNLSCTSPYNADFDGDEMNLHMPQSYNTKAELEELCLVSKQVLSPQSNRPVMGIVQDSL 497
Query: 500 TAAHLL-MEDSVLLSHLQMQQL---QMFCPHRFLSPDIFKIS------------KDSVWS 543
T+ L + D+ MQ L + F + D+ K S +W+
Sbjct: 498 TSLRLFTLRDTFFDKRETMQLLYSINLSKYENFNNEDMHKTSIMDLLNYPTISYPKKLWT 557
Query: 544 GKQLFSMLLPPDFEYTFPSKD-------------VYISGGKLISA-EGSSWLRDYEGNLF 589
GKQ+FS +L P+ Y+ S + V I G+L+S + +G L
Sbjct: 558 GKQIFSYIL-PNIVYSAVSNEHDENDLENLKDTVVIIRNGELLSGIIDKKSVGTTQGGLI 616
Query: 590 QYLIKRYRDK-VLDFLYAAQEVLCEWLS-VRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ + K + F Q+++ ++++ + ++ + D + + K M ++ +
Sbjct: 617 HIIANDFSHKRITSFFDDTQKIMNKFITFINAFSIGIGD------AIANKETMVQVQSSI 670
Query: 648 REAQDTCNFQQLMVDSHMNFL-----MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
A+ ++L+ + N L MS K+ S+E Q + L++
Sbjct: 671 ENAK--YQVEKLIERAQRNKLERLPGMSMKE------------SFESQVNYILNKPR--- 713
Query: 703 FKHVFWDIQNL-AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPH 761
DI A K + N++ M AGSKG+ + + Q + CLG Q+ R P
Sbjct: 714 ------DISGTSASKSLNFCNNMRTMVLAGSKGSFINISQVTACLGQQNVEGK---RIPF 764
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
+ + GD + ++ + VENS++ GL P E + H++ R+
Sbjct: 765 GFNYRSLPHFSKGDYSGKSRGF-----VENSYVKGLAPEEFYFHAMGGREGLIDTAIKTA 819
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D D +VR A G I Q+ Y +G
Sbjct: 820 ETGYIQRRLVKAMEDATVGLDRSVRGANG-FIYQYEYGEDG 859
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 194 bits (494), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 163/579 (28%), Positives = 268/579 (46%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ L E+G+P +A L ER+ +N L + +
Sbjct: 352 LMGKRVDFSARTVITGDPNLDLDEVGVPRSIAMNLTFPERVTPYNIAYLQELVRNGPTTY 411
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 412 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 471
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 472 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 530
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
++ + QD+L L Q+Q + ++ P S P I +W+GKQ+ S
Sbjct: 531 VMGIVQDTLCGIRKFTLRDTFLDWSQVQNILLWVPDWDGSVPTPAVIKPKPLWTGKQILS 590
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQYLI 593
M++P PD + P D + I G++I G+S +G L +
Sbjct: 591 MVIPRGINIHRSPDPKSPNPVFDDGMMIENGEIIFGIVEKKTVGAS-----QGGLIHVVF 645
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ + L+ Q V+ WL G ++ + D + + + MD I ++ +
Sbjct: 646 REKGPEACRTLFGGIQTVVNYWLFHNGFSIGIGD------TIADRPTMDHIKEQIQTRKQ 699
Query: 653 TCNFQQLMVDSHMNFLMSAKD---SESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
N Q + D+ + L +A ES S L+ + +S +Q S+
Sbjct: 700 --NVAQTIDDATHDRLKAAPGMTIRESFESKVERELNLARDQSGQYAQKSL--------- 748
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFR---FPHEL 763
+DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 749 ---------KEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPFGFRHRSLPH-- 797
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 798 -------FTKDDFSPESRGF-----VENSYLRGLTPHEFFFHAMAGREGLIDTAVKTAET 845
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 846 GYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYGEDG 883
Score = 48.5 bits (114), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G + +C +CG + C GHFG I+ + HP F+ + K+L IC C +
Sbjct: 57 DPRMGTIDRNFKCQTCG-EGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKL 115
Query: 106 RKE 108
+ +
Sbjct: 116 KAD 118
>gi|46670|emb|CAA32925.1| RNA polymerase subunit A (AA 1-880) [Sulfolobus acidocaldarius]
Length = 880
Score = 194 bits (494), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 226/913 (24%), Positives = 391/913 (42%), Gaps = 137/913 (15%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAK 64
I+ G+ G+ + E ++SV I G E V +P+LG+ P +C CG
Sbjct: 5 IIRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGEKCPVCG-N 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ-------------- 110
C GHFG I+ ++H ++ I L S C +C I+ + Q
Sbjct: 64 TLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKL 123
Query: 111 KGAGSSRKEQPRVCKYCVRN---PAQWYPRMRFKLSSK---DLSGKTAIIVEIDEKLSKK 164
+ ++R+ + K ++N P + + KL + +I+ ++ +
Sbjct: 124 RWPSAARRLVEYIKKISIKNLECPHCGEKQFKIKLEKPYNFNEERNGSIVKLSPSEIRDR 183
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFL 223
+++PD + +D + S +P +L+ V + + PSI E I ++D
Sbjct: 184 LERIPDSDVELLGYDPK----SSRPEWMILTVLPVPPI--TIRPSITIESGIRAEDDLTH 237
Query: 224 KCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKL 283
K + N R+ E A + + + D W + Y D E+ L + +
Sbjct: 238 KLVDIIRLNERLKESIEAGA-PQLIIEDLWDLLQYHVATYF--DNEIPGLPPAKHRSGRP 294
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
+ R E R + N+ GKR D R V++ DPN+ + E+GI
Sbjct: 295 LRTLAQRLKGKEGRFRGNLS---------------GKRVDFSARTVISPDPNLSIDEVGI 339
Query: 344 PCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID-------- 394
P +A L + ER+ + N ER+ I+ G YV + G RRID
Sbjct: 340 PYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDG----RRIDLRYVKDRK 395
Query: 395 ----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
++ G ++ R L DGD+VL NR PS+H S++A V+VLP +N L C P++
Sbjct: 396 ELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLP-GRTFRLNLLDCPPYN 454
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
DFDGD ++ ++PQ+ A E EL+ + K +I + G ++ GQD ++ A+LL +
Sbjct: 455 ADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTT 514
Query: 511 LLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPS------ 562
LL+ ++ + P I ++ ++GKQ+ S+ LP DF + P+
Sbjct: 515 LLTVEEVATILGVTDFVGELGEPAI--LAPKPYYTGKQVISLFLPKDFNFHGPANISKGP 572
Query: 563 ---KD--------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRDKVLDFLY-AAQ 608
KD + I G L+ + + ++ + I+ Y + +L
Sbjct: 573 RACKDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVF 632
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHM-NF 667
++ +L +RG T++L D+ + + +EI ++E + Q VD ++ F
Sbjct: 633 KMFIRFLEMRGFTMTLEDITIPDEA------QNEITTKIKEG-----YSQ--VDEYIRKF 679
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
+ R+++ SY ++D + V +I A KY N++ M
Sbjct: 680 NEGQLEPIPGRTIEESLESY--------ILDTLDKLRKVAGEI---ATKYLDPFNNVYIM 728
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
G++G+ L + Q + LG Q R E + + + + GD A+ +
Sbjct: 729 AITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLF---KYGDIAPEARGF---- 781
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVR 844
V+NSF+ GL+P E F H+ R+ D A G + RRL+ + DL YDGTVR
Sbjct: 782 -VKNSFMRGLSPYEMFFHAAGGRE-GLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVR 839
Query: 845 NAYGNQIVQFSYN 857
+ YG+ IVQ Y
Sbjct: 840 SLYGD-IVQVVYG 851
>gi|397135888|gb|AFO11439.1| RNA polymerase I, partial [Priceomyces haplophilus]
Length = 867
Score = 194 bits (494), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 162/576 (28%), Positives = 272/576 (47%), Gaps = 67/576 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V +GDPN+ L ++G+P +A L E + +N RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVXSGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTELVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID AL G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRXNKRAGDIALXYGWKVERHLMDEDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + ++ + QD+L + + + + Q+ + + P+ R SP I K
Sbjct: 324 IVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIDYEQVMNMLYWIPNWDGRIPSPAIIK--P 381
Query: 539 DSVWSGKQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQ+ SM +P D +KD + I G + + G
Sbjct: 382 KPLWTGKQILSMAIPKGIHLQRFDDGMNLLSAKDNGMLIIDGEIIFGVVDKKTVGATGGG 441
Query: 588 LFQYLIKRYRDKVLDFLY-AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L +++ K L+ + Q+V+ WL G ++ + D +A S M ++
Sbjct: 442 LIHTVMREKGPKACAQLFNSIQKVVNYWLLHNGFSIGIGDT-IADAST-----MKDVTNT 495
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
++EA+ Q++++D+ N L D E +L+ S+E S L+QA A +
Sbjct: 496 IQEAKKKV--QEIILDAQQNRL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSA 546
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
++++L N++ M +GSKG+ + + Q S C+G Q R P S
Sbjct: 547 EMNLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSDR 595
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
+ + + +K + VENS+L GL P E F H++ R+ G +
Sbjct: 596 SLPHFTKDNYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 650
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RR++ + D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 651 QRRIIKALEDIMVHYDGTTRNSLGD-VIQFLYGEDG 685
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 194 bits (494), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 245/954 (25%), Positives = 401/954 (42%), Gaps = 141/954 (14%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG ++ +PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLN---DPRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHIG 94
Query: 87 FLSDIAKLLNSICPKCKTI----RKERQKGAGSSRKEQPR------------VCKYCVRN 130
F++ I K+ S+C C + E+ + A + + R VC+ V
Sbjct: 95 FITKIKKVCESLCMHCGKLLLDEHNEQMRQAIQIKDPKKRFNAVWSLCKTKMVCETDV-- 152
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDE-KLSKKNKKLPDDYWGFIPFDAQQEENSVKP 189
P++ P KL S+ G T + D KL KK D G DA + P
Sbjct: 153 PSEDDPT---KLISRGGCGNTQPTIRKDGLKLVGSWKK--DKSTG----DADE------P 197
Query: 190 NRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFS-HEKKL 248
++VLS +++ + K + P +++ + +T V + S +E +
Sbjct: 198 EQRVLSTEEILNIFKHISPEDSYRLGFNEEFARPEWMILTVLPVPPPPVRPSISFNESQR 257
Query: 249 FFDNWTRHLKKMVDYRGRDIELS---------HLVQDCLKISKLHLDKSSRKDSA----- 294
D+ T K+ D +I L H V++ + + H+ D A
Sbjct: 258 GEDDLTF---KLADILKANISLETLEHNGAPHHAVEEAESLLQFHVATYMDNDIAGQPQA 314
Query: 295 ---EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
R K+I I+ ++GKR D R V++GDPN++L ++G+P +A L
Sbjct: 315 LQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTL 374
Query: 352 QISERLNSWNWERLSVCISFRLLEK-GELYVCRKGGLVRIRRID----------ALELGD 400
E + +N +RLS + E G YV R G RID L+ G
Sbjct: 375 TYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRDNG----DRIDLRYSKRSGDVQLQYGW 430
Query: 401 IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHG 460
+ R + D D VL NR PS+H S++A VKV+P S+ +N SP++ DFDGD ++
Sbjct: 431 KVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTF-RLNLSVTSPYNADFDGDEMNL 489
Query: 461 YIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL 520
++PQ+ R EL++L A+ Q+++ QS + + + QD+L L L Q+ +
Sbjct: 490 HVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDQVLNM 549
Query: 521 QMFCPH-RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYT--------FPSKD---VYIS 568
+ P + P I +WSGKQ+ S+ +P KD + I
Sbjct: 550 LYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPKGIHLQRFDEGTTLLSPKDNGMLVID 609
Query: 569 GGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDL 627
G + + G L + + + L+ Q+V+ WL G + + D
Sbjct: 610 GEIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARLFGNIQKVVNFWLLHNGFSTGIGDT 669
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
+ M EI + EA+ + + ++ N L++AK + R S+
Sbjct: 670 VADGQT------MREISETIAEAKQKV--EAVTKEAQAN-LLTAKHGMTLRE------SF 714
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E L++A A + ++++L N++ M AGSKG+ + + Q S C+G
Sbjct: 715 EDNVVRFLNEARDRAGRLAEMNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVG 766
Query: 748 LQHSLAP-LSFRF-----PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLE 801
Q + F F PH D + +K + VENS+L GL P E
Sbjct: 767 QQSVEGKRIGFGFVDRTLPH---------FSKDDYSPESKGF-----VENSYLRGLTPQE 812
Query: 802 CFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE 859
F H++ R+ G + RRL+ + D+ YDGT RN+ GN ++QF Y +
Sbjct: 813 FFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGED 871
Query: 860 GTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
G G I Q SL S+ A+ + I LL TS L ++LE GS+
Sbjct: 872 GMD--AGHIEKQ---SLDTMGGSDQAFERRYR-IDLLNTSNSLE-PSLLESGSE 918
>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
Length = 872
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 160/576 (27%), Positives = 275/576 (47%), Gaps = 66/576 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEVVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E++++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAEMSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P I +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWIPNWDGVIPPPAVIKPKPLWTG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D KD + I G++I + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDDGRDMLSPKDKGILIVDGEIIFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ ++ L+++ Q+V+ WL G ++ + D + + K M ++ ++EA+
Sbjct: 448 REKGPQICAQLFSSIQKVVNYWLLHNGFSIGIGD------TIADKDTMRDVTITIQEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILDAQQNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 553 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFS 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSY---NIEGTST 863
+ D+ YDGT RN+ G+ I+QF Y I+GTS
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDGIDGTSV 691
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 224/938 (23%), Positives = 379/938 (40%), Gaps = 164/938 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E +++SV E G + + +PR G+ + + C +C A +
Sbjct: 21 VQFGILSPDEIKRMSVTEGGIRYSEMMEGGRPKLCGLMDPRQGVIDRSARCQTC-AGNMA 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I+ + H FL+ K++ +C C + + PR+
Sbjct: 80 ECPGHFGHIELAKPVYHIGFLTKTIKIMRCVCFFCSKLL---------VSPDDPRIKDIV 130
Query: 128 VRNPAQWYPRMR--FKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQ---- 181
++ Q R+ + L + + V+ D + ++ P + G + Q
Sbjct: 131 NKSKGQPKKRLTHVYDLCKGKMICEGGDEVDADVGPEEGKEEKPKGHGGCGRYQPQIRRA 190
Query: 182 --------QEENSVKPNRKV-LSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------C 225
+ N RK+ LS ++V + K + S E I+ D F +
Sbjct: 191 GLDLTAEWKHVNEDSQERKIQLSAERVLEIFKRI--SDEECSIMGMDPRFARPDWMVCTV 248
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHLVQDCLK 279
PV P R + V + + D+ T L +V + + +H++ + K
Sbjct: 249 LPVAPLQVRPSVVMFGAARGQ----DDLTHKLADIVKINNQLKRNEMNGAAAHIIAEDTK 304
Query: 280 ISKLHLDK--------SSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
+ + H+ R R K++ I+ ++GKR D R V+T
Sbjct: 305 MLQFHVTTLVDNEVPGMPRAVQKSGRPLKSVKQRLKGKEGRIRGNLMGKRVDFSARAVIT 364
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
DPN+++ ++G P VA+ L E + +N +R+ + + G Y+ R G
Sbjct: 365 PDPNLQIDQVGCPRTVAQNLTFPEIVTPFNIDRMQELVRRGANQYPGAKYIIRDTG---- 420
Query: 391 RRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
RID L+ G + R + D DIV+ NR P++H S++ VK+LP S+
Sbjct: 421 HRIDLRYHPKPSDLHLQCGYKVERHIRDDDIVIFNRQPTLHKMSMMGHRVKILPWSTF-R 479
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N +P++ DFDGD ++ ++PQ++ R E+ EL + + +I QS R ++ + QD+LT
Sbjct: 480 LNLSVTTPYNADFDGDEMNMHVPQSVETRAEIMELAMVPRMIITPQSNRPVMGIVQDTLT 539
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP---- 553
A + V + M L M+ P + P I K +W+GKQLFS+++P
Sbjct: 540 AVRKFTKRDVFIDRNDMMNLLMWLPTWDGKMPQPAILK--PKPLWTGKQLFSLIIPGHVN 597
Query: 554 --------PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYR 597
PD E + P K V + G+LIS L G+L +
Sbjct: 598 CIRMHSTHPDEEDSGPYKWISPGDTKVIVENGELISGILCKKSLGPSGGSLVHIVALEMG 657
Query: 598 DKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
+ Y Q V+ WL + G T+ + D + + ++ Q+T
Sbjct: 658 HETSKLFYGYIQTVVNNWLLLEGHTIGIGDCIADTQT-------------YQDIQNTIKK 704
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL--- 713
+L V + + A + E E L Q + + D ++
Sbjct: 705 AKLDV---IEVIEKAHNDE-----------LEPTPGNTLRQTFENQVNRILNDARDKTGG 750
Query: 714 -AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCA 766
A K S+ N+ +M AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 751 SAQKSLSEFNNFKSMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIK-- 808
Query: 767 AWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PG 822
Y P + VENS+L GL P E F H++ R+ G
Sbjct: 809 --------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTSETG 854
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M + AYDGTVRN+ +VQ Y +G
Sbjct: 855 YIQRRLIKAMESVMIAYDGTVRNS-NRHLVQLRYGEDG 891
>gi|312073209|ref|XP_003139417.1| RNA polymerase Rpb1 [Loa loa]
gi|307765420|gb|EFO24654.1| RNA polymerase Rpb1 [Loa loa]
Length = 1403
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 233/906 (25%), Positives = 373/906 (41%), Gaps = 151/906 (16%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG +C +C ++ C GHFG+I + H F ++L IC C
Sbjct: 58 DPRLGTCQKQTDCQTC-KQNLVDCVGHFGYIDLAIPVFHVGFFRLTIQMLQCICKFC--- 113
Query: 106 RKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRM-----RFKLSSKDLS------GKTAII 154
A EQ + + V NP Y R R +SK ++ K I+
Sbjct: 114 ------SAMLITDEQKKAFLHQVNNPNLDYLRRKALHKRIVAASKKITVCNRCGHKNGIV 167
Query: 155 VEIDEKLSK--KNKKLPDDYWGFIPFDAQQ--EENSVKPNRK--VLSCKQVSYLLKDVDP 208
+ + K + +P D + + AQ+ E ++ P K +L QV L ++
Sbjct: 168 KKAVGAVLKIAHAEVIPADNYSEYVYAAQENKELQNLLPKTKFTLLDPLQVQVLFSKIEK 227
Query: 209 S-IREEFILSKDAP------FLKCFPVTPNNHR---VTEVPHAFSH--------EKKLFF 250
I + S D P L PV P R V+EV + E L
Sbjct: 228 EDIPLLMVRSADTPKHPSDVILTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLIN 287
Query: 251 DNWTRHLKKMVDYRGRDIELSHLVQDCL-----KISKLHLDKSSRKDSAEVRQKKNIDIS 305
D +H K+ + HL C ++S L D ++ + Q+ +
Sbjct: 288 DVIKKHKKEGSPTKTISETWDHLQVQCALYINSELSGLPPDMQPKRATRGFTQR----LK 343
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
G + + GKR D R V++ DPN+K+ ++G+P VA+ L E +N N ER+
Sbjct: 344 GKQG--RFRGNLSGKRVDFSGRTVISPDPNLKIDQVGVPVHVAKILTFPEIVNEANIERM 401
Query: 366 SVCI---------SFRLLEK--GELYVCRKGGLVRIRRIDA--LELGDIIYRPLTDGDIV 412
I + ++E+ G R G R+I A L++GD+I R L D DIV
Sbjct: 402 RKLILNGDDIHPGANHIVERATGNKRFLRYGN----RQITAAQLKVGDVIERHLDDNDIV 457
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVEL 472
L NR PS+H S+++ KV+P N C+P++ DFDGD ++ ++PQ AR E
Sbjct: 458 LFNRQPSLHKISIMSHRAKVVP-GRTFRFNECACTPYNADFDGDEMNLHVPQTYEARAEA 516
Query: 473 TELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMED--------------SVLLSHLQMQ 518
+ L+ + LI +SG L++ QD +T +LL +++ S+ + Q
Sbjct: 517 SLLMGVKSNLITPRSGEPLIAAIQDFITGTYLLTHKDSFFPRSEVHRFAAAIIDSNSKKQ 576
Query: 519 QLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFE-------------YT----FP 561
Q P L P +W+GKQL +++ PD + YT F
Sbjct: 577 QRIRIPPPAILKP-------AELWTGKQLAELIIRPDVDSKINLNLTTKNKSYTGNEEFC 629
Query: 562 SKDVY--ISGGKLISAEGSSWL--RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLS 616
KD Y I L+ L + ++F L++ + D +D ++ + +LS
Sbjct: 630 VKDSYVIIRNSVLLCGVLDKALLGSGSKTSIFYILLRDFGEDAAIDAMWRLGRMASVFLS 689
Query: 617 VRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSES 676
RG ++ + D+ + K L+ E LR C+ +++ S K E
Sbjct: 690 NRGFSIGIGDVRPS------KALLKEKSDLLRNGYKVCD----------DYIESLK--EG 731
Query: 677 TRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNL 736
Q YE + L + S ++NL S+ N+ L M GSKG+
Sbjct: 732 RLKAQPGCTEYETLEALILKELSAIRDHAGQACLRNL-----SRHNAPLTMAVCGSKGSF 786
Query: 737 LKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTG 796
+ + Q C+G Q A R P + T AK + VENSF +G
Sbjct: 787 INISQMIACVGQQ---AISGHRPPDGFEDRSLPHFERRQKTPAAKGF-----VENSFYSG 838
Query: 797 LNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
L P E F H++ R+ G + RRL+ + DLC YDGTVR++ G+ +++F
Sbjct: 839 LTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCINYDGTVRSSVGD-VIEF 897
Query: 855 SYNIEG 860
+ +G
Sbjct: 898 KFGEDG 903
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 194 bits (493), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 162/584 (27%), Positives = 271/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + ++G+P +A L E + +N ERL + +
Sbjct: 346 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 405
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 406 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 461
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 462 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 520
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + +S + M+ + +P I K
Sbjct: 521 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILK 580
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+ +W+GKQ+F++++P T V I G+L++
Sbjct: 581 --PEPLWTGKQVFNLIIPKQINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKK 638
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L Y G L + + D FL Q ++ WL ++ + D +A S
Sbjct: 639 TLGTYSGGLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT-IADAST---- 693
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M+ I + A++ +QL+ ++H L ++E RS+ S+E + + L++A
Sbjct: 694 -METINQTISAAKE--KVKQLIREAHEKKL----EAEPGRSMMD---SFENRVNQTLNRA 743
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA N A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 744 RDDA--------GNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 792
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 793 IPYGFIDRTLPHFTKDDLGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 890
Score = 43.5 bits (101), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 20 ISLGISTDTEKEKLSVMEI--GAVSE--------VTNPRLGLPNPTNECSSCGAKDRKAC 69
+ GI + E ++SV++I G +E +++PRLG + +C +C A C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKLKCETCTAS-MAEC 76
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
GHFG ++ + H FL + ++ +C C I
Sbjct: 77 PGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKI 112
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 8/130 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D+ TR+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1338 CHEDVDV---TRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1394
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1395 MTYRGHLMAITRHGI-----NRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIM 1449
Query: 1245 WGKVPSVGTG 1254
G++ +GTG
Sbjct: 1450 LGQLAPIGTG 1459
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 194 bits (493), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 228/890 (25%), Positives = 384/890 (43%), Gaps = 137/890 (15%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDI--------- 91
V + +PRLG + +C +CG + C GHFG I+ + H F+S I
Sbjct: 50 VGGLNDPRLGSIDRNYKCQTCG-EGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCM 108
Query: 92 --AKLL----NSICPKCKTIRKERQK-GAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSS 144
KLL N + + I+ +++ A S + VC V P++ P K S
Sbjct: 109 HCGKLLLDEYNELMRQAIKIKDPKRRFNAVWSLCKSKMVCDTEV--PSEDDPS---KYIS 163
Query: 145 KDLSGKTAIIVEIDEKLS-----KKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQV 199
+ G + D LS KK+K E+S +P +++LS +++
Sbjct: 164 RGGCGNAQPSIRKD-GLSLVGTWKKDK---------------NSEDSDQPEKRILSAEEI 207
Query: 200 SYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFS-HEKKLFFDNWTRHL- 257
+ K + P ++D + +T V + S +E + D+ T L
Sbjct: 208 LNVFKHITPEDSLRLGFNEDFARPEWMILTVLPVPPPPVRPSISFNESQRGEDDLTYKLG 267
Query: 258 ---KKMVDYRGRDIELS--HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDI 304
K ++ + +I S H++Q+ + + H+ D A + QK K+I
Sbjct: 268 DILKANINVQRLEINGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRA 327
Query: 305 SNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER 364
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +R
Sbjct: 328 RLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDR 387
Query: 365 LSVCISFRLLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVL 413
L+ + E G YV R G RID + GDI + R + D D VL
Sbjct: 388 LTQLVRNGPNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIIDNDPVL 443
Query: 414 INRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELT 473
NR PS+H S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+
Sbjct: 444 FNRQPSLHKMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELS 502
Query: 474 ELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLS 530
+L A+ +Q+++ QS + + + QD+L + + Q+ + + P
Sbjct: 503 QLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPK 562
Query: 531 PDIFKISKDSVWSGKQLFSMLLPPDFE---------YTFPSKD--VYISGGKLISAEGSS 579
P I K +WSGKQL SM +P Y P + + I G +
Sbjct: 563 PTILK--PKPLWSGKQLLSMAIPNGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKK 620
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
+ G L + + +V L+ Q+V+ WL G ++ + D + + +
Sbjct: 621 TVGSSSGGLIHVVTREKGPQVCAKLFGNIQKVVNYWLLHNGFSIGIGD------TIADEK 674
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M EI + A+ Q++ ++ N L++AK + R S+E L++A
Sbjct: 675 TMREITEAIALAKKRV--QEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEA 725
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSF 757
A + ++++L N++ M AGSKG+ + + Q S C+G Q ++F
Sbjct: 726 RDKAGRSAELNLRDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAF 777
Query: 758 RF-----PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 778 GFADRTLPH---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREG 823
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGEDG 872
>gi|294495210|ref|YP_003541703.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
gi|292666209|gb|ADE36058.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
Length = 886
Score = 194 bits (492), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 222/886 (25%), Positives = 371/886 (41%), Gaps = 152/886 (17%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK-TIR 106
RLG+ +P +C +CG + + C GHFG I+ +LH F I K+L S C C +
Sbjct: 59 RLGVIDPGLKCKTCGGRAGE-CPGHFGHIELVAPVLHVGFNKIIRKILRSTCRNCSHLLL 117
Query: 107 KERQKGAGSSR---------------------KEQPRVCKYCVRNPAQWYPRMRFKLSSK 145
+++QK A ++ + ++C YC + ++F+ S
Sbjct: 118 EDKQKKAYINQFAKLDVMSHLPDDLINNVFKEARKTKICPYC----GEEQLEIKFEKPSD 173
Query: 146 DLSGKTAII-VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
+ + EI ++L +++PDD + D + S +P VL+ V +
Sbjct: 174 YIENDYKLTPTEIRDRL----ERIPDDDLKVMGMDPE----SARPEWMVLTVLAVPPVT- 224
Query: 205 DVDPSIR-EEFILSKDAPFLKCFPVTPNNHRVTEVPHA-------------FSHEKKLFF 250
V PSI E S+D K + N R E A + FF
Sbjct: 225 -VRPSITLESGQRSEDDLTHKLVDIIRINQRFQENRDAGAPQLIIEDLWELLQYHLTTFF 283
Query: 251 DNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGL 310
DN + GR L L Q R E R + ++
Sbjct: 284 DNEVSGVPPARHRSGR--PLKTLTQ--------------RLKGKEGRFRGSLS------- 320
Query: 311 RWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS 370
GKR + R VV+ DPN+ + E+G+P Q+A+ + I R+ S N E + ++
Sbjct: 321 --------GKRVNFSARTVVSPDPNLSINEVGVPYQIAKHMTIPVRVISRNLEMMRAYVA 372
Query: 371 FRLLEK--GELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSI 420
R E G YV R+ G R++ +A LE G + R + DGDIVL NR PS+
Sbjct: 373 -RGGETHPGANYVFREDGR-RLKITEANKEELSEKLEPGWTVERQMQDGDIVLFNRQPSL 430
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A VKVLP + +NP C P++ DFDGD ++ ++ Q +R E L+ + +
Sbjct: 431 HKMSIMAHKVKVLP-NKTFKLNPAVCPPYNADFDGDEMNMHVLQTEESRAEANILMQVQE 489
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL-SPDIFKISKD 539
+++ + G ++ D ++ LL + ++S +L R L P + D
Sbjct: 490 NILSPRFGGPIIGGIHDHISGMFLLTRNENMISKNDALELLRKSEVRELPEPAGYTDVGD 549
Query: 540 SVWSGKQLFSMLLPPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWL 581
W+GKQ+FS +LP D F + D Y + G+L++ +
Sbjct: 550 PFWTGKQIFSQILPKDLNLEFKANVCFKCDVCKGRDCEYDAYVVVENGELVTGTIDEKAI 609
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
++G + ++KRY + F+ + + G++ +SD +
Sbjct: 610 GAFKGKILDSIVKRYGTTEAAQFVDDMTRLAIRGVMRTGLSFGISDEDIP---------- 659
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
REA+ + + ++ + L+ A +++ L G L+ + + Q+
Sbjct: 660 -------REAKLNIDEELERAENEVAELIQAYEAKELEPLPGRTLA--ETIELKIMQSLG 710
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
A H +A + +NS + M K+G++G++L L Q + C+G Q R
Sbjct: 711 KARDHT----GTIAGNHLGLENSAVIMAKSGARGSMLNLTQMAACVGQQAVRGERIRRGY 766
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA-- 818
+ ++R GD A ++ S S+ +GLNP E F HSV R+ D A
Sbjct: 767 EGRTLPHFDR---GDLGADAHGFVKS-----SYKSGLNPTEYFFHSVGGRE-GLVDTAVR 817
Query: 819 -DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G L RRL+ ++DL YD +VR G IVQF Y +G +
Sbjct: 818 TSQSGYLQRRLVNALQDLEVQYDRSVRETRG-VIVQFKYGEDGIDS 862
>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 1003
Score = 194 bits (492), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 161/590 (27%), Positives = 265/590 (44%), Gaps = 76/590 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ + ++G+P +A L E + +N ERL C+ E
Sbjct: 260 LMGKRVDFSARTVITGDPNLNIDQVGVPRSIARNLTFPETVTPFNIERLMACVQNGPTEH 319
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D+++ NR PS+H S+
Sbjct: 320 PGAKYVIRDNG----ERIDLRYSKRGGDIHLQTGYKVERHLVDDDLIIFNRQPSLHKMSM 375
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N +P++ DFDGD ++ ++PQ R E+ EL + +Q+++
Sbjct: 376 MGHRVKVMPYST-FRLNLSVTTPYNADFDGDEMNMHVPQTHETRAEVQELCMVPRQIVSP 434
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q + + QDSL + L + + M+ P + P + +W+G
Sbjct: 435 QKNAPCMGIVQDSLCGVRKFTKRDNFLPKDFVMNILMWVPDWDGVVPTPAIVKPVPLWTG 494
Query: 545 KQLFSMLLP-----------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYE 585
KQ+ S+++P PD E P+ DV + K+I +G + +
Sbjct: 495 KQMMSLIIPKINLENFHSQHPDDE---PNADVSVGDTKVIIQDGEHIAGILCKKTVGNAG 551
Query: 586 GNLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G + Y + F +A Q V+ W+ G ++ + D + + + M I
Sbjct: 552 GGIIHVTAMEYGPEAAKRFFHACQVVVNYWMLQNGFSIGIGD------TIADEATMGNIV 605
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
++ A+D ++ +H N L + R ++E + L++A A K
Sbjct: 606 NAIQTARDKVKV--IIAAAHENKL-KPHPGMTIRE------TFEADIKSELNRARDSAGK 656
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
A K S+ N+ M AGSKG+ + + Q + C+G Q S+ R P
Sbjct: 657 S--------AEKSLSEHNNARQMVIAGSKGSSVNISQMAACVG-QQSVE--GNRIPFGFK 705
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
+ D++ A+ + VENS+L GL P E F H++ R+ G
Sbjct: 706 NRSLPHFTKDDHSPEARGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETG 760
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
+ RRL+ + D+ YDGTVRN+ G QIVQF Y +G G++ QP
Sbjct: 761 YIQRRLVKALEDVMAQYDGTVRNSAG-QIVQFCYGEDGMD--GGKVEPQP 807
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 194 bits (492), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 160/574 (27%), Positives = 276/574 (48%), Gaps = 72/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N + L + +
Sbjct: 344 LMGKRVDFSARTVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNIDYLQTLVRNGPTTY 403
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 404 PGARYVVRDTGERIDLRYNKRADAFLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRV 463
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + +Q++ QS +
Sbjct: 464 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIVTPQSNKP 522
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFS 549
++ + QD+L + Q+Q + ++ P S I I K +W+GKQ+ S
Sbjct: 523 VMGIVQDTLCGIRKFTLRDCFMDWNQVQNILLWVPSWDGSVPIPAILKPKPLWTGKQILS 582
Query: 550 MLLPPDFEY--------TFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRD 598
M++P + P D ++I G ++ + +G L + +
Sbjct: 583 MVIPRGINIARKSEKGGSAPPADDGMFIENGDIMYGVVDKKTVGASQGGLIHVVFREKGP 642
Query: 599 KVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
+ L+ Q+V+ WL G ++ + D + + +M +I + + ++ +
Sbjct: 643 EATRTLFTGLQQVVNYWLFHNGFSIGIGD------TIAGPDVMAKITKTIDQQKEKV--K 694
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
+L D++ + L + + G + ++E + + L++A DA K D Q+
Sbjct: 695 ELTADAYWDLL---------KPMPGMTIRETFESKVNHELNKARDDAGK----DAQD--- 738
Query: 716 KYGSK-DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCAAW 768
G K DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 739 --GLKDDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHRTLPH------- 789
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + ++ + VENS+L GL P E F H+++ R+ G + R
Sbjct: 790 --FTKDDYSPESRGF-----VENSYLRGLTPQEFFFHAMSGREGLIDTAVKTAETGYIQR 842
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 843 RLVKALEDVMVCYDGTVRNSLGD-LVQFIYGEDG 875
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 25/252 (9%)
Query: 1016 VPDMLISNKDCSSINM--QKECNDAFCVTVMIVENFKRTSIDLETIQMWVM------PFL 1067
V + +I+N + M Q D + +V ++T LE I+ V L
Sbjct: 1229 VANQIINNFKTDLVVMWSQDASEDTMIIRCRVVSGEEKTEDGLEDIEEDVFLRQLENTML 1288
Query: 1068 LKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQ 1127
V++G + I +V + KDK +H + G + + + T+L + + C
Sbjct: 1289 NSIVLRGVKGIDRVFLSEKDK-----THINDDGTVGQEKEWVLETNGTNLKAVM---C-- 1338
Query: 1128 IMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSA 1187
+D +D+TR+ +N GI+AG Q L L+S I G + H+ ++ + ++
Sbjct: 1339 -VDGVDYTRTSSNNCVEVFNTLGIEAGRQSVLKELKSCIEFDGSYVNYRHIALLCDLMTQ 1397
Query: 1188 TGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGK 1247
G + + G+ + S + ++ F ++AA G D+ G + + +G+
Sbjct: 1398 RGTLMAITRHGI-----NRSDTGALMRCSFEETVEILMEAAAVGEKDDCHGVAENVMFGQ 1452
Query: 1248 VPSVGTGGHFDI 1259
+ +GTG FD+
Sbjct: 1453 MAPMGTGA-FDV 1463
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V +PR+G + +C +CG + C GHFG I+ + HP F+ + K+L IC C
Sbjct: 55 VNDPRMGTIDRNFKCQTCG-EGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCG 113
Query: 104 TIRKE 108
++ +
Sbjct: 114 KLKAD 118
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 194 bits (492), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 151/580 (26%), Positives = 266/580 (45%), Gaps = 71/580 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +++ I
Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNG 400
Query: 373 LLEK-GELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R+ G L ++++ LE G + R + DGD+V+ NR PS+H S+
Sbjct: 401 PSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSM 460
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +KV+P S+ +N SP++ DFDGD ++ ++PQ + R E+ E++ + +Q+++
Sbjct: 461 MGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSP 519
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+L + L + + + + M+ P + P I K + +W
Sbjct: 520 QSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQ--LW 577
Query: 543 SGKQLFSMLLPP----DFEYTFPSKD----------VYISGGKLISA-EGSSWLRDYEGN 587
+GKQLFS+++P F T K+ V I G+L++ L G+
Sbjct: 578 TGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGS 637
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ ++ + D F+ Q V+ WL RG T+ + D S + ++ L
Sbjct: 638 IIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLT------ 691
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ SAK+ ++ ++ +E Q ++ + V
Sbjct: 692 ---------------------ISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQV 730
Query: 707 FWDIQNLAYKYG----SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
++ A S+DN+L AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 731 LNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGK---RIPFG 787
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 788 FQSRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 842
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YD TVRN+ G+ ++QF+Y +G
Sbjct: 843 TGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAYGEDG 881
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 1066 FLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDC 1125
L + V++G + IKKV + DK +V+ +G + W L D
Sbjct: 1284 MLSEMVLRGIKGIKKVFMRTDDK--------------IPKVTENGGFGVREEW-ILDTDG 1328
Query: 1126 HQIMDM-----IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLI 1180
++++ +D TR+ ++I GI+A L L + IS G + HL I
Sbjct: 1329 VSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAI 1388
Query: 1181 VANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSV 1240
+A+ ++ G + + G+ + + P ++ F + AA D+++G
Sbjct: 1389 LADVMTYRGHLMAITRHGI-----NRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVT 1443
Query: 1241 DALGWGKVPSVGTGG-----HFDIIYSGEGRTLSKPVDV 1274
+ + G++P +GTG + D+I + L +P +V
Sbjct: 1444 ENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNV 1482
Score = 41.2 bits (95), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+P +G + T C +C C GHFG I+ + H F+ + K+L +C C
Sbjct: 54 DPAMGTIDKTQRCQTCSGT-MAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHC 109
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 194 bits (492), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 167/587 (28%), Positives = 271/587 (46%), Gaps = 79/587 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +R+ I
Sbjct: 250 IRGNLMGKRVDFSARTVITADPNLGIDQVGVPRSIALNLTTPEIVTPYNMDRMYQLIRAG 309
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R+ L L G + R + DGD VL NR PS+H S+
Sbjct: 310 PTEYPGARYIIRSDGTRFDLRYVRKASDLHLEPGYRVERHIQDGDYVLFNRQPSLHKMSI 369
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A +KV+P S+ +N SP++ DFDGD ++ ++PQ+ R E +E++A+ +Q+++
Sbjct: 370 MAHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSFETRAEASEIIAVPRQIVSP 428
Query: 486 QSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQ---QLQMFCPHRFLSPDIFKISKDSV 541
QS R ++ + QD+L A+ + + D+ + + M L F R P I K K
Sbjct: 429 QSNRPVMGIVQDTLMASQKMTLRDTFIEKDVIMNIVMHLDSF-DGRLPIPAIVKSPKGPR 487
Query: 542 WSGKQLFSMLLP-----------PDFEYTFPS---KDVYISGGKLISA-EGSSWLRDYEG 586
W+GKQLFS LP PD E T S V I G+L+ L G
Sbjct: 488 WTGKQLFSTFLPNVNVVRFHSTHPDGESTDISPGDTQVRIENGELLCGIVCKRTLGTSAG 547
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+L ++ + D F Q+V+ WL G +V + D + M+ I
Sbjct: 548 SLIHVIMNEHGPDTARVFFNMTQKVINNWLINVGFSVGIGDTIADDRT------MESINS 601
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
L++A++ + +++++ + + + RS S+E + + L+QA A K
Sbjct: 602 TLKKAKEEVD--TVVIEAQQGKM----ELQPGRSFIE---SFESKVNRILNQARDAAGKT 652
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---F 759
+Q + N++ M +GSKG+ + + Q C+G Q+ P FR
Sbjct: 653 AQGSLQ--------RSNNVKTMLTSGSKGSFINISQMFACVGQQNVEGKRIPFGFRNRTL 704
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH Y P + VENS+L GL P E F H++ R+
Sbjct: 705 PH----------------FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 748
Query: 818 ADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
G + RRL+ M D+ YD T RN+ G +I+QF Y +G +
Sbjct: 749 VKTSETGYIQRRLIKAMEDVMVQYDNTTRNSMG-EIIQFLYGEDGMA 794
>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
Length = 884
Score = 194 bits (492), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 223/928 (24%), Positives = 381/928 (41%), Gaps = 140/928 (15%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECSSCGAK 64
++ GI GI + E ++SV++I + V +PRLG P C CG
Sbjct: 7 VIKGIKFGILSPDEIRRMSVVQIVSPETYDEDGTPISGSVMDPRLGAIEPGQTCPICG-N 65
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSI---CPKCKTIRKERQKGAGSSRKEQP 121
KAC GHFG I+ +++ ++ I LL + C + K E +K RK +
Sbjct: 66 TMKACPGHFGHIELALPVINVLYVKHIYDLLRATCANCGRIKVSPSEIEKYMVYLRKLKA 125
Query: 122 RVCKYCVRNPAQWYPRMRFKLSSKDLSG---------KTAIIVEIDEK-----------L 161
R Y + +++ + K++ G K VE E+ +
Sbjct: 126 R-YPYLAKRFSEFIKKKAIKVTVCPHCGAKQPKIKLEKPTTFVEQHEESKEVVRLNPLTV 184
Query: 162 SKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDA 220
+ +++P++ + +D + +P V + V + PSI E I S+D
Sbjct: 185 RSRLERIPNEDIELLGYDPRDS----RPEWMVFTVLPVPP--TSIRPSILIETGIRSEDD 238
Query: 221 PFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDN-WTRHLKKMVDYRGRDIELSHLVQDCLK 279
K + N R+ E H + ++ D+ W + Y D E+ L +
Sbjct: 239 LTHKLVDIVRTNERLRE--HISAGAPQIIIDDLWELLQYHVTTYL--DNEVPGLPPAKHR 294
Query: 280 ISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLK 339
+ + R E R + N+ GKR D R V++ +P + +
Sbjct: 295 SGRPLKTLAQRLKGKEGRFRGNLS---------------GKRVDYSARTVISPEPYLSIN 339
Query: 340 EIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID---- 394
E+G+P VA+ L + E++ WN E + + I+ G Y+ G RRID
Sbjct: 340 EVGVPIDVAKILTVPEKVTEWNIEEMRKLVINGPNRWPGANYIITPDG----RRIDLRYV 395
Query: 395 --------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCC 446
+L G I+ R + DGDI + NR PS+H S++ +KVLP ++ C
Sbjct: 396 KDRKSVAESLAPGYIVERHVRDGDIAIFNRQPSLHRMSMMGHIIKVLP-GKTFRLHLAVC 454
Query: 447 SPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM 506
P++ DFDGD ++ +IPQ AR E L+ + ++ + G ++ QD ++ A++L
Sbjct: 455 PPYNADFDGDEMNLHIPQTEDARAETRLLLKVQNHILTPRYGGIIIGAIQDYISGAYILT 514
Query: 507 EDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEY-------- 558
+ LL + L P+ +S +W+GKQ+ SM LP DF Y
Sbjct: 515 IKTTLLKKEDVIDLLSAAGVVKELPEPAILSPKRLWTGKQIISMFLPEDFNYHGKANISS 574
Query: 559 ---------TFPSKDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYA 606
F V + GKL+ + + + + +L +L K Y + V F+
Sbjct: 575 GPLKCEDIECFWDSYVVVRKGKLLMGVLDKKTIGAEQQDSLLYWLAKEYGVEYVALFMDH 634
Query: 607 AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMN 666
+ L RG T+ L D +A +RK +++ I + ++ + V+ +
Sbjct: 635 VFRMFIRVLEKRGFTLRLDD--VAIDENTRKEILEIIKEAFSKVEELV---KQYVEGKLE 689
Query: 667 FLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLA 726
+ ES E L+ + ++ ++ +D F + F
Sbjct: 690 VVPGRSLEESLEIKILEILAEARDKAGEVAVNRLDPFNNAF------------------I 731
Query: 727 MFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPS 786
M + G++GN+L L Q S LG +R +++ + D A+ +
Sbjct: 732 MARTGARGNVLNLTQMSATLGQMTVRGERIWRGYMGRPISSYGQ---NDLGPLARGF--- 785
Query: 787 AVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTV 843
V NSF +GL+P E F+H+ R+ D A G + RRL+ ++DL YDGTV
Sbjct: 786 --VVNSFYSGLSPTEMFMHAAGGRE-GLVDTAVRTSQSGYMQRRLINALQDLYVEYDGTV 842
Query: 844 RNAYGNQIVQFSYNIEG---TSTPTGEI 868
R++ N I+QF Y +G P G I
Sbjct: 843 RDST-NSIIQFVYGEDGADPAKAPHGNI 869
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 193 bits (491), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 162/576 (28%), Positives = 268/576 (46%), Gaps = 76/576 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 352 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIHWLQDLVRNGPTTY 411
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV + G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 412 PGARYVVKDTGERIDLRYNKRADAFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 471
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 472 RLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 530
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
++ + QD+L L Q+Q + ++ P P I +W+GKQL S
Sbjct: 531 VMGIVQDTLCGIRKFTLRDTFLDWTQVQNILLWVPDWDGTVPTPVVIKPKPLWTGKQLLS 590
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQYLI 593
M +P PD + + P D V I G+LI G+S +G L +
Sbjct: 591 MCIPRGINIHRNPDPKSSNPVFDDGVLIENGELIFGIVDKKTVGAS-----QGGLVHVVF 645
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ ++ L+ Q+V+ WL G ++ + D + + + M I + +
Sbjct: 646 REKGPEMTRQLFTGLQQVVNYWLFHNGFSIGIGD------TIADRKTMAHITEQIAIRKQ 699
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
T Q++ D+ + L S + + E++ + A Q A KH+
Sbjct: 700 TV--AQIIDDAAHDRLKPQPGMTIRESFESK---VERELNLARDQNGQYAQKHL------ 748
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFR---FPHELSCA 766
+DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 749 ------KEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPFGFRHRTLPH----- 797
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + A+ + VENS+L GL P E F H++ R+ G +
Sbjct: 798 ----FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 848
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 849 QRRLVKALEDVMVHYDGTVRNSLGD-LIQFVYGEDG 883
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA----VSEVTNPRLGLPNPTNECSSCGAKDR 66
EV GIL+ + + + E VM+ + + +PRLG + +C +CG +
Sbjct: 18 EVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKIGGLMDPRLGTIDRNFKCQTCG-EGM 76
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + HP F+ + K+L IC C ++ +
Sbjct: 77 SECPGHFGHIELARPVFHPGFVVKVKKILECICVNCGRLKAD 118
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 193 bits (491), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 218/885 (24%), Positives = 360/885 (40%), Gaps = 171/885 (19%)
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRN 130
GHFG I + H F++ K+L +C C + P++ + V++
Sbjct: 1 GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIVVKS 51
Query: 131 PAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY------------------ 172
Q PR R GKT D L+K N++ PD
Sbjct: 52 KGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQ-PDPNKKPGHGGCGHYQPSIRRT 108
Query: 173 -------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK- 224
W D+Q++ + V+S ++V +LK + + E FIL D + +
Sbjct: 109 GLDLSAEWKHPNEDSQEK-------KIVVSAERVWEILKHI--TDEECFILGMDPKYARP 159
Query: 225 ------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----H 272
PV P R V F K D+ T L ++ R E S H
Sbjct: 160 DWMIVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGAAAH 215
Query: 273 LVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDD 324
++Q+ +K+ + H+ D QK K I I+ ++GKR D
Sbjct: 216 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 275
Query: 325 CFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCR 383
R V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R
Sbjct: 276 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVR 335
Query: 384 KGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
G RID L+ G + R L D D+V+ NR P++H S++ VKVL
Sbjct: 336 DNG----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVL 391
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 392 PWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMG 450
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSM 550
+ QD+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+
Sbjct: 451 IVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILK--PRPLWTGKQIFSL 508
Query: 551 LLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQ 590
++P PD E P K + K++ G L G+L
Sbjct: 509 IIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLH 568
Query: 591 YLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
++ Y Q V+ WL + G ++ + D + +EI +++
Sbjct: 569 ICFLELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQT------YNEIQMAIKK 622
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
A+D +N + A + E E L Q + + D
Sbjct: 623 AKDDV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILND 661
Query: 710 IQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---F 759
++ A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 662 ARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTL 721
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 722 PHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 765
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 766 VKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDG 809
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 193 bits (491), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 231/965 (23%), Positives = 397/965 (41%), Gaps = 172/965 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVIDRHSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPNNPKIKEVVMKSKGQPRK 134
Query: 119 EQPRVCKYCV-RNPAQWYPRMRF-KLSSKDLSGKT---AIIVEIDEKLSKKNKKLPDDYW 173
V C +N + M K + +++ GK + + L + W
Sbjct: 135 RLAFVYDLCKGKNICEGGDEMDVNKENEENVPGKKQGHGGCGRYQPNIKRTGLDLVAE-W 193
Query: 174 GFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNH 233
I D+Q+++ S LS ++V +LK + + E FIL D F + P+
Sbjct: 194 KHINEDSQEKKIS-------LSAERVWEILKHI--TDEECFILGMDPKFAR-----PDWM 239
Query: 234 RVTEVPHAFSHEKKLFF-----DNWTRHLKKMVDYRGRDIEL---------SHLVQDCLK 279
VT +P + N K+ D + EL +H++ + +K
Sbjct: 240 IVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLADIIKANNELQRNEAAGAAAHVISENIK 299
Query: 280 ISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK-----------RNDDCFRM 328
+ + H+ D + + + L+ IK + GK R D R
Sbjct: 300 MLQFHVATLVDNDMPGMPRAMQ---KSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 356
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE------LYVC 382
V+T DPN+++ ++G+P +A+ L E + +N++++ L+++G Y+
Sbjct: 357 VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKM-----MELVQRGNSQYPGAKYIV 411
Query: 383 RKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKV 432
R G RID L+ G + R + DGD+V+ NR P++H S++ VKV
Sbjct: 412 RDNG----ERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKV 467
Query: 433 LPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLL 492
LP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++
Sbjct: 468 LPWST-FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVM 526
Query: 493 SLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFS 549
+ QD+LTA + + V + QM + MF P + P I K +W+GKQ+FS
Sbjct: 527 GIVQDTLTAVRKMTKRDVFIDKEQMMNILMFLPIWDGKMPRPAILK--PKPLWTGKQVFS 584
Query: 550 MLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLF 589
+++P PD E P K + K++ G L G+L
Sbjct: 585 LIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLL 644
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+V Y Q V+ WL + G ++ + D + EI ++
Sbjct: 645 HICFLELGHEVCGRFYGNIQTVINTWLLLEGHSIGIGDTIADPQTYL------EIQKAIK 698
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A++ + +++ +H N + + R ++E Q + L+ A
Sbjct: 699 KAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT------ 743
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 744 --GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHF 801
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 802 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 845
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E P LS
Sbjct: 846 AETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQTLPTVKLSN 904
Query: 879 CAISE 883
A +
Sbjct: 905 KAFEK 909
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum
NZE10]
Length = 1773
Score = 193 bits (491), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 157/571 (27%), Positives = 260/571 (45%), Gaps = 64/571 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L ++G+P +A L ER+ +N +L+ + LE
Sbjct: 353 LMGKRVDFSARTVITGDPNLDLDQVGVPRSIARVLTFPERVTPYNKHKLTELVRNGPLEH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G ++ R G RID L +G I+ R + D D ++ NR PS+H S+
Sbjct: 413 PGAKFIIRDDG----SRIDLRYHKRAGEINLMVGWIVERHVVDNDYIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ L A+ +++
Sbjct: 469 MGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVANLCAVPHNIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD++ +++ V L + Q+ + ++ P + P I W+G
Sbjct: 528 QKNGPLMGIVQDTMAGIYMMTRRDVFLDYEQVMNILLWVPGWDGVVPPPAIIKPLPRWTG 587
Query: 545 KQLFSMLLPPDFEYTFPSKD-----------VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQ+ S+ LP P KD + I G++I + G + I
Sbjct: 588 KQIASLALPAGLNILRPKKDHMPLREEKDDGLVIQNGEIIWGRMVKGIVGASGGGVVHCI 647
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
R D ++F AAQ ++C WL G +V + D + + DEI +EA
Sbjct: 648 FNDRGPDAAVEFFNAAQRIVCYWLLHNGFSVGIGDTIPDDFMVGK--IEDEII-SQKEA- 703
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
Q + N L A + R ++E + AAL A +
Sbjct: 704 ----VQGFETEVQANELEPAP-GMTIRE------TFESKTKAALDNARNKS--------G 744
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRL 771
++AYK+ + N++ M K+GSKG+ + Q + +G Q SL R P
Sbjct: 745 DVAYKHMNACNNVGIMVKSGSKGSTTNVSQMTAAVG-QQSLE--GKRLPFGFKYRVLPHF 801
Query: 772 RAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLM 829
D + ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 802 PKDDYSPASRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLV 856
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ ++ YD TVRN+ G+ I+QF+Y +G
Sbjct: 857 KALEEVMIKYDSTVRNSLGD-ILQFAYGEDG 886
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
+ +P+LG + + C +CG +++ C GHFG I+ + H F++ I K+L S+C C
Sbjct: 53 LNDPKLGTIDRNSRCGTCG-EEQLECPGHFGHIELAIPVFHVGFITKIKKILESVCHNCG 111
Query: 103 KTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEK 160
K + ER + K +R+ P+ RF+ ++ GKT + EK
Sbjct: 112 KLLEDERSTAFAMALK---------LRD-----PKRRFEQITRLCKGKTDCAADEPEK 155
Score = 41.6 bits (96), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR+ ++ +S +GI+A + ++ +++ G + H+ I+ + + A GE
Sbjct: 1344 VDPTRTTCNHFQSIMKVFGIEAVRASLMREMKDVLTNDGSYVNHRHMAILCDVMCARGEL 1403
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + S + ++ F AA +G +D+ +G + + G++
Sbjct: 1404 MAVTRHGI-----NRSDTGALMRCSFEETVEILFDAASSGELDDCRGVSENIILGQLAPS 1458
Query: 1252 GTGGHFDIIYSGE 1264
GT G FD++ E
Sbjct: 1459 GT-GEFDMLLDTE 1470
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 193 bits (491), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 268/584 (45%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + ++G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPEVVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIRDDG----QRLDLRYLKRSSDHHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEILELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDF---------------EYTFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V I G++I+
Sbjct: 503 --PRPIWTGKQVFNLIIPKQINLVRYSAWHNESDRGHLTLGDTVVRIEKGEVITGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + +
Sbjct: 561 TLGASSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSMGIGD------TIADAT 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
MD I +++A+ Q+L+ ++ + E R+L S+E Q + L++A
Sbjct: 615 TMDTINETIQDAK--IKVQELI----EKYMAHKLEQEPGRTLLE---SFENQVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA N A + S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GNSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPYGFQGRTLPHFVKDDKGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YD TVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDATVRNSLGD-VIQFLYGEDG 812
>gi|397135967|gb|AFO11478.1| RNA polymerase I, partial [Dipodascopsis anomala]
Length = 872
Score = 193 bits (491), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 176/628 (28%), Positives = 282/628 (44%), Gaps = 82/628 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N +LS + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLALDQVGVPRSIARTLTYPEIVTPYNIHKLSQLVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGEISLQYGWRVERHIVDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL L A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELRMLCAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QDSL + + LS+ Q+ + + P+ P I K + W
Sbjct: 328 QSNKPVMGIVQDSLCGVRKMTKRDSFLSYDQVMNILFWVPNWDGVIPQPAILK--PKAYW 385
Query: 543 SGKQLFSMLLPPDFEYT-FPSKDVYIS----------GGKLISAEGSSWLRDYEGNLFQY 591
+GKQ+ SM++P F K+ +S G + + G L
Sbjct: 386 TGKQMMSMVIPKGINMQRFDDKNTLLSVRDNGMMIENGEIMYGVVDKKTVGATSGGLIHT 445
Query: 592 LIKRYRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
++ RDK DF+ Q V+ WL G ++ + D +A R I + I
Sbjct: 446 IM---RDKGPVPTRDFIGGVQTVVNYWLLHNGFSIGIGDT-IADAKTMRNI-TNTISQAK 500
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
+E QQL++D+ N L A+ + R S+E++ S L+QA A +
Sbjct: 501 KEV------QQLILDAQANVL-PAEPGMTLRE------SFEQKVSKVLNQARDTAGRSAE 547
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+ + N++ M AGSKG+ + + Q S C+G Q R P S
Sbjct: 548 TSLTDA--------NNVKQMVVAGSKGSFINISQMSACVGQQIVEGK---RIPFGFSYRT 596
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + ++ +I ENS+L GL P E F H++ R+ G +
Sbjct: 597 LPHFTKDDYSPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGIIDTAVKTAETGYIQ 651
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAA 885
RRL+ + D+ YD TVRN+ G+ +VQF Y +G E Q + S+S +
Sbjct: 652 RRLVKALEDVMVKYDATVRNSLGD-VVQFVYGEDGLDATYVE--KQVIDSMS------GS 702
Query: 886 YSALDQPISLLETSPLLNLK-NVLECGS 912
+ + P LK ++LECG+
Sbjct: 703 NDRFEHRFKIDLMDPEFTLKPSLLECGN 730
>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
Length = 1016
Score = 193 bits (491), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 154/577 (26%), Positives = 273/577 (47%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + ++W+G
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 509
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P S++ + ISGG+L+ + G +++
Sbjct: 510 KQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLAKKTVGASGGGLIHIVFN 569
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D H+ +++ ++
Sbjct: 570 EKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIENA 616
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V + SA ++E SL G ++ ++E + S AL++A DA ++
Sbjct: 617 VNNQKAEV---LEITRSATENE-LESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 672
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q A P F++ PH
Sbjct: 673 DL--------NNAPQMARSGSKGSTINISQMTAVVGQQSVEAKRIPFGFKYRTLPH---- 720
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + +K + VENS+L GL P E F H++ R+ G
Sbjct: 721 -----FTKDDYSPESKGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 770
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 771 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|387595902|gb|EIJ93525.1| RNA polymerase 2 [Nematocida parisii ERTm1]
Length = 1284
Score = 193 bits (490), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 228/905 (25%), Positives = 377/905 (41%), Gaps = 200/905 (22%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
RLG CS+CG K C GHFG I+ + HP L + K+L S+C +C +I
Sbjct: 53 RLGPSTKDAVCSTCGEK-MAECVGHFGHIELALPVYHPGLLKNTHKVLQSVCKQCSSILL 111
Query: 108 ERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK 167
PA+ ++ KL ++ G + + +K+ ++KK
Sbjct: 112 -----------------------PAEVQAQLLIKLRAR--KGNRTLEQRVIKKVFDESKK 146
Query: 168 LPDDY-----------WGFIPF---------DAQQE------ENSVKPNRKV-------- 193
+ + GF F D Q+E SVK N ++
Sbjct: 147 TVECFSCNSINGIVRKTGFKFFHRVHRLKKHDTQKEIERTLYSASVKDNPELTNWINNTP 206
Query: 194 ---LSCKQVSYLLKDVDPSIREEFILSKD--APFLKCFPVTPNNHRVTEVPHAFSHEKKL 248
LS V +L+++ + +S D + + C PV P R P S +
Sbjct: 207 DEYLSPITVQEVLRNITEDAKSLLGVSCDVVSLMITCLPVPPGTIR----PSVMSLDSSS 262
Query: 249 FFDNWTRHLKKMVDYRGRDIELSHLVQDCL-KISKLH----------------LDKSSRK 291
D+ T L + + Y S L++D + K + LH + SR
Sbjct: 263 NEDDLTIKLSE-ISYT------SQLIRDEIAKGASLHALAENWDLLQSQCAQLISSDSRP 315
Query: 292 DSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
D+A++R + G + + GKR + R V++ DPN+ ++++GIP ++A+ L
Sbjct: 316 DAAKIRSLVQ-RLKGKHG--RFRGNLSGKRVEFSGRTVISPDPNLSVEQVGIPEEMAKTL 372
Query: 352 QISERLNSWNWERLSV-----CISFRLLEKGELYVCRKGGLVRIRRID--ALELGDIIYR 404
+ + N ++S C ++ G Y+ ++ + +R+ + LE GDI+ R
Sbjct: 373 TVPIPITEGNKNKMSALSKNGCSTY----PGANYLLKQDRRIFLRKDNNIVLEEGDILER 428
Query: 405 PLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQ 464
+ D D+VL NR PS+H S++A VKVLP + N CSP++ DFDGD ++ ++PQ
Sbjct: 429 HMQDSDVVLFNRQPSLHRLSIMAHKVKVLP-GRTLRFNECVCSPYNADFDGDEMNIHLPQ 487
Query: 465 AIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC 524
+ ARVE EL+ + L ++G+ L++ QD +T ++L+ + S + Q Q +
Sbjct: 488 TVEARVEALELMGVKNNLSVPRNGQPLIAATQDFITGSYLITKKSTFFTKKQFGQFITYA 547
Query: 525 ----PHRFLS-PDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSS 579
R + P I + + +++GK LFS L +++ S EG
Sbjct: 548 LPNSTERIRAKPTILRPA--VIYTGKTLFSTALNLSISVEIRTRNYTPSTVPSAQNEGVF 605
Query: 580 WLRD---------------YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVS 623
+RD EG +F Y ++ V+ A LC +L G ++
Sbjct: 606 VMRDGEILFGRADKRIVGAEEGTIFHYELREGGPLVVVKALDAIARLCSRYLGESGFSIG 665
Query: 624 LSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE 683
L D++ +++ + +A D C + ++K ++ST S+
Sbjct: 666 LDDVFAEP----------DLYQLITKAVDACEVEA-----------ASKPADSTISI--- 701
Query: 684 HLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHS 743
LS+A DA KH I+ L S NS + M GSKG+L+ + Q
Sbjct: 702 -----------LSRAREDAGKHC---IERL-----SPHNSPVIMQACGSKGSLINVSQMV 742
Query: 744 LCLGLQ---HSLAPLSF---RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGL 797
C+G Q L F PH GD T ++ + V +SF GL
Sbjct: 743 ACVGQQVVGGQRISLDFGDRTLPH----------FQGD-TNASRGF-----VRSSFCAGL 786
Query: 798 NPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E F H+V+ R+ G + RRLM + + AYDGTVR G QI+Q
Sbjct: 787 LPTEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKVLEGVYVAYDGTVRR--GKQIIQMQ 844
Query: 856 YNIEG 860
+ +G
Sbjct: 845 FGDDG 849
Score = 43.9 bits (102), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ ++ R+ +NI GI+A + + ++ I G ++ H+ ++A+ + T
Sbjct: 1151 VEGVNSARTSTNNIYETYKTLGIEAARESIVKEIQYTIGQHGISVDTRHIGLLADVMCFT 1210
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
GE G+ GL + SS A F G A+ +G D + G + + G+
Sbjct: 1211 GEICGMTRFGL----QKMGGSSVLTLASFEQTGEHLFTASYSGYEDQINGVSECIISGQR 1266
Query: 1249 PSVGTGGHFDIIY 1261
+GTG F I++
Sbjct: 1267 IPIGTGS-FKILF 1278
>gi|387593897|gb|EIJ88921.1| RNA polymerase 2 [Nematocida parisii ERTm3]
Length = 1284
Score = 193 bits (490), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 228/905 (25%), Positives = 377/905 (41%), Gaps = 200/905 (22%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
RLG CS+CG K C GHFG I+ + HP L + K+L S+C +C +I
Sbjct: 53 RLGPSTKDAVCSTCGEK-MAECVGHFGHIELALPVYHPGLLKNTHKVLQSVCKQCSSILL 111
Query: 108 ERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK 167
PA+ ++ KL ++ G + + +K+ ++KK
Sbjct: 112 -----------------------PAEVQAQLLIKLRAR--KGNRTLEQRVIKKVFDESKK 146
Query: 168 LPDDY-----------WGFIPF---------DAQQE------ENSVKPNRKV-------- 193
+ + GF F D Q+E SVK N ++
Sbjct: 147 TVECFSCNSINGIVRKTGFKFFHRVHRLKKHDTQKEIERTLYSASVKDNPELTNWINNTP 206
Query: 194 ---LSCKQVSYLLKDVDPSIREEFILSKD--APFLKCFPVTPNNHRVTEVPHAFSHEKKL 248
LS V +L+++ + +S D + + C PV P R P S +
Sbjct: 207 DEYLSPITVQEVLRNITEDAKSLLGVSCDVVSLMITCLPVPPGTIR----PSVMSLDSSS 262
Query: 249 FFDNWTRHLKKMVDYRGRDIELSHLVQDCL-KISKLH----------------LDKSSRK 291
D+ T L + + Y S L++D + K + LH + SR
Sbjct: 263 NEDDLTIKLSE-ISYT------SQLIRDEIAKGASLHALAENWDLLQSQCAQLISSDSRP 315
Query: 292 DSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
D+A++R + G + + GKR + R V++ DPN+ ++++GIP ++A+ L
Sbjct: 316 DAAKIRSLVQ-RLKGKHG--RFRGNLSGKRVEFSGRTVISPDPNLSVEQVGIPEEMAKTL 372
Query: 352 QISERLNSWNWERLSV-----CISFRLLEKGELYVCRKGGLVRIRRID--ALELGDIIYR 404
+ + N ++S C ++ G Y+ ++ + +R+ + LE GDI+ R
Sbjct: 373 TVPIPITEGNKNKMSALSKNGCSTY----PGANYLLKQDRRIFLRKDNNIVLEEGDILER 428
Query: 405 PLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQ 464
+ D D+VL NR PS+H S++A VKVLP + N CSP++ DFDGD ++ ++PQ
Sbjct: 429 HMQDSDVVLFNRQPSLHRLSIMAHKVKVLP-GRTLRFNECVCSPYNADFDGDEMNIHLPQ 487
Query: 465 AIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC 524
+ ARVE EL+ + L ++G+ L++ QD +T ++L+ + S + Q Q +
Sbjct: 488 TVEARVEALELMGVKNNLSVPRNGQPLIAATQDFITGSYLITKKSTFFTKKQFGQFITYA 547
Query: 525 ----PHRFLS-PDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSS 579
R + P I + + +++GK LFS L +++ S EG
Sbjct: 548 LPNSTERIRAKPTILRPA--VIYTGKTLFSTALNLSISVEIRTRNYTPSTVPSAQNEGVF 605
Query: 580 WLRD---------------YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVS 623
+RD EG +F Y ++ V+ A LC +L G ++
Sbjct: 606 VMRDGEILFGRADKRIVGAEEGTIFHYELREGGPLVVVKALDAIARLCSRYLGESGFSIG 665
Query: 624 LSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE 683
L D++ +++ + +A D C + ++K ++ST S+
Sbjct: 666 LDDVFAEP----------DLYQLITKAVDACEVEA-----------ASKPADSTISI--- 701
Query: 684 HLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHS 743
LS+A DA KH I+ L S NS + M GSKG+L+ + Q
Sbjct: 702 -----------LSRAREDAGKHC---IERL-----SPHNSPVIMQACGSKGSLINVSQMV 742
Query: 744 LCLGLQ---HSLAPLSF---RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGL 797
C+G Q L F PH GD T ++ + V +SF GL
Sbjct: 743 ACVGQQVVGGQRISLDFGDRTLPH----------FQGD-TNASRGF-----VRSSFCAGL 786
Query: 798 NPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E F H+V+ R+ G + RRLM + + AYDGTVR G QI+Q
Sbjct: 787 LPTEFFFHAVSGREGLVDTAVKTAETGYMQRRLMKVLEGVYVAYDGTVRR--GKQIIQMQ 844
Query: 856 YNIEG 860
+ +G
Sbjct: 845 FGDDG 849
Score = 43.5 bits (101), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ ++ R+ +NI GI+A + + ++ I G ++ H+ ++A+ + T
Sbjct: 1151 VEGVNSARTSTNNIYETYKTLGIEAARESIVKEIQYTIGQHGISVDTRHIGLLADVMCFT 1210
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
GE G+ GL + SS A F G A+ +G D + G + + G+
Sbjct: 1211 GEICGMTRFGL----QKMGGSSVLTLASFEQTGEHLFTASYSGYEDQINGVSECIISGQR 1266
Query: 1249 PSVGTGGHFDIIY 1261
+GTG F I++
Sbjct: 1267 IPIGTGS-FKILF 1278
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 193 bits (490), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 160/580 (27%), Positives = 271/580 (46%), Gaps = 67/580 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 316 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 375
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 376 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 435
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 436 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 494
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ QS R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 495 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILK--PR 552
Query: 540 SVWSGKQLFSMLLPPDFE--------------YTFPSKD-VYISGGKLISAE-GSSWLRD 583
+W+GKQ+F++++P + P V I G+L+S L
Sbjct: 553 PIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGT 612
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M +
Sbjct: 613 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAATMVK 666
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +A+D + ++L+ +H L ++E R++ S+E + + L++A DA
Sbjct: 667 INETISKAKD--DVKELIKQAHDKQL----EAEPGRTMME---SFENRVNQVLNKARDDA 717
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 718 --------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFG 766
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 767 FIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 821
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 822 TGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 860
Score = 45.4 bits (106), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1308 CHED---VDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1364
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1365 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVSENIM 1419
Query: 1245 WGKVPSVGTGGHFDI 1259
G++ +GTGG FD+
Sbjct: 1420 LGQLAPIGTGG-FDL 1433
>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
Length = 1092
Score = 193 bits (490), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 215/953 (22%), Positives = 392/953 (41%), Gaps = 176/953 (18%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSS 60
P + + G+ + E +++SV E G + + +PR G+ T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKE 108
C A + C GHFG I+ + H FL K+L +C PK K I
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA- 131
Query: 109 RQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDE 159
K G +K V C +N + M K + G + E
Sbjct: 132 --KSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKD 219
++ + +L + W + D+Q++ + +LS ++V + K + S E F+L +
Sbjct: 190 RIRRSGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGME 239
Query: 220 APFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------ 266
+ + PV P + R V + + D+ T L +V +
Sbjct: 240 PRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQ 295
Query: 267 DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKD 315
+ +H++ + +K+ + H L ++ +K ++ K + G ++
Sbjct: 296 NGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQ-RLKGKEG--RVRG 352
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE 375
++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL + +
Sbjct: 353 NLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQ 412
Query: 376 -KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G Y+ R G RID L+ G + R + DGDIV+ NR P++H S
Sbjct: 413 YPGAKYIIRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMS 468
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 469 MMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVT 527
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSV 541
QS R ++ + QD+LTA + V L ++ L MF + P I K +
Sbjct: 528 PQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPL 585
Query: 542 WSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWL 581
W+GKQ+FS+++P PD E + P K + K++ G L
Sbjct: 586 WTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSL 645
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + Y+ Q V+ WL + G T+ + D S +
Sbjct: 646 GTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTY 699
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQ 697
+I +++A+ + +++ +H N L + ++ + + L+ + ++ + +Q
Sbjct: 700 QDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQ 757
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
S+ + N+ +M +G+KG+ + + Q +G Q+ P
Sbjct: 758 KSLSEY------------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
F+ PH + Y P + VENS+L GL P E F H++
Sbjct: 800 FGFKHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGG 843
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 844 REGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|167044066|gb|ABZ08751.1| putative RNA polymerase Rpb1, domain 2, partial [uncultured marine
crenarchaeote HF4000_APKG4H17]
Length = 993
Score = 193 bits (490), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 171/590 (28%), Positives = 277/590 (46%), Gaps = 84/590 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ L E+G+P QVA +L I E + WN E+L + I+ G
Sbjct: 47 GKRVDFSSRTVISPDPNLDLGEVGVPVQVATKLTIPEIVTEWNIEKLKKLVINGPDTFPG 106
Query: 378 ELYVCRKGGL------VRIRRI--DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ R G+ V R I D+LE+G ++ R L+DGD+VL NR PS+H S++A
Sbjct: 107 VNYIVRPDGVKIRLDFVEDRSIIADSLEIGYLVERHLSDGDVVLFNRQPSLHQMSIMAHH 166
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+VLP ++P C P++ DFDGD ++ ++PQ+ AR E L+ + +QLI+ + G
Sbjct: 167 VRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAIMLMRVQEQLISPRFGG 225
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPD-IFKISKDSVWSGKQLF 548
++ +D +T A+LL +D L+ + M + P+ K +++GKQLF
Sbjct: 226 PIIGGLRDFITGAYLLTKDDTTLTKQEFSNFAMLGGYDGELPEPKIKNKNGPLYTGKQLF 285
Query: 549 SMLLPPDFEYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKRY 596
S+ LP DF S KD+ I G+L+S + SS + ++ + K Y
Sbjct: 286 SLFLPSDFNLILTSKWSKGTNGKLKDIVIKNGELVSGVIDKSSIGAEEPESVLHRIAKDY 345
Query: 597 -RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+K FL + ++ ++++ G + SDL L+ IL D L+E D
Sbjct: 346 GNEKAKTFLNSILIIIKQFITNYGFSYGYSDLELSDKDRG-AILTD-----LQETYD--- 396
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQG--------EHLSYEKQRSAALSQASVDAFKHVF 707
+ ++S K+ + + L+G ++YE R A +A + A
Sbjct: 397 --------KVADIISQKNKGTLKGLRGLTVAETAEALITYELAR--ARDRAGITAN---- 442
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
NLA DN+ M G++G+ L + Q + LG Q R L
Sbjct: 443 ---SNLA-----DDNAGKIMATTGARGSALNVGQMAGALGQQS-------RRGKRLHTGY 487
Query: 768 WNR----LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DL 820
NR + D+ + ++ S +F GL+ LE F H++ R+ D A
Sbjct: 488 GNRTLPHFKEHDDNPDSHGFVKS-----NFRDGLSVLEFFFHAMGGRE-GLVDTAVRTQQ 541
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + + YD TVR+ +G I+QF Y +G + G+
Sbjct: 542 SGYMQRRLINALEHIRLEYDNTVRDPHG-HIIQFLYGEDGIDVAKSDHGE 590
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca
mulatta]
Length = 1658
Score = 193 bits (490), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 214/946 (22%), Positives = 390/946 (41%), Gaps = 176/946 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL---SKSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRN 322
+ + +K+ + H L ++ +K ++ K + G ++ ++GKR
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQ-RLKGKEG--RVRGNLMGKRV 359
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYV 381
D R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+
Sbjct: 360 DFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYI 419
Query: 382 CRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
R G RID L+ G + R + DGDIV+ NR P++H S++ V+
Sbjct: 420 IRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVR 475
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
+LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R +
Sbjct: 476 ILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPV 534
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLF 548
+ + QD+LTA + V L ++ L MF + P I K +W+GKQ+F
Sbjct: 535 MGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIF 592
Query: 549 SMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNL 588
S+++P PD E + P K + K++ G L G+L
Sbjct: 593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSL 652
Query: 589 FQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ Y+ Q V+ WL + G T+ + D S + +I +
Sbjct: 653 VHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTI 706
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFK 704
++A+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 707 KKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY- 763
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR--- 758
N+ +M +G+KG+ + + Q +G Q+ P F+
Sbjct: 764 -----------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRT 806
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 807 LPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDT 850
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 851 AVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 193 bits (490), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 273/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + ++G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + SP I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKIPSPTILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPSKD-VYISGGKLISAE-GSS 579
+W+GKQ+F++++P + P V I G+++S
Sbjct: 503 --PRPLWTGKQVFNLIIPRQINLIRYSAWHSESETGFITPGDTCVRIEKGEVLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + +
Sbjct: 561 TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGD------TIADAA 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M+ I + +A++ +QL+ + L ++E R++ S+E + + L++A
Sbjct: 615 TMETINETISKAKNEV--KQLIKAAQEKAL----EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A + S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ DN ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPYGFDGRTLPHFTKDDNGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 193 bits (490), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 213/905 (23%), Positives = 374/905 (41%), Gaps = 158/905 (17%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------ 99
+PR G+ T C +C A + C GHFG I+ + H FL K+L +C
Sbjct: 35 DPRQGVIERTGRCQTC-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 93
Query: 100 ------PKCKTIRKERQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTA 152
PK K I K G +K V + C +N + M K + G
Sbjct: 94 LVDANNPKIKDILI---KSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDED 150
Query: 153 IIVE--------IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
I E ++ + +L + W + D+Q++ + +LS ++V + K
Sbjct: 151 IQKEKGHGGCGRYQPRIRRTGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFK 202
Query: 205 DVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHL 257
+ + E FIL D F + PV P + R V + + D+ T L
Sbjct: 203 RI--TDEECFILGMDPRFARPEWLIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKL 256
Query: 258 KKMVDYRGR------DIELSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNID 303
+V + + +H++ + +K+ + H L R R K++
Sbjct: 257 ADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLK 316
Query: 304 ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
++ ++GKR D R V+T DPN+ + ++G+P +A + E + +N +
Sbjct: 317 QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNID 376
Query: 364 RLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIV 412
RL + + G Y+ R G RID L++G + R + DGDIV
Sbjct: 377 RLQELVRRGNSQYPGAKYIIRDNG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIV 432
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVEL 472
+ NR P++H S++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+
Sbjct: 433 IFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 491
Query: 473 TELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFL 529
EL + + ++ QS R ++ + QD+LTA + V L ++ L MF +
Sbjct: 492 QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVP 551
Query: 530 SPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEG 577
P I K +W+GKQ+FS+++P PD E + P K + K+I G
Sbjct: 552 QPAILK--PRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVIVENG 609
Query: 578 S--------SWLRDYEGNLFQY-LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLY 628
L G+L ++ D F Q V+ WL + G T+ + D
Sbjct: 610 ELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGD-- 667
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---L 685
S + +I +++A+ + +++ +H N L + ++ + + L
Sbjct: 668 ----SIADAKTYQDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRIL 721
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ + ++ + +Q S+ + N+ +M +G+KG+ + + Q
Sbjct: 722 NDARDKTGSSAQKSLSEY------------------NNFKSMVVSGAKGSKINISQVIAV 763
Query: 746 LGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGL 797
+G Q+ P F+ PH + Y P + VENS+L GL
Sbjct: 764 VGQQNVEGKRIPFGFKHRTLPHFIK----------------DDYGPESRGFVENSYLAGL 807
Query: 798 NPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E F H++ R+ G + RRL+ M + YD TVRN+ NQ+VQ
Sbjct: 808 TPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLR 866
Query: 856 YNIEG 860
Y +G
Sbjct: 867 YGEDG 871
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis
catus]
Length = 1817
Score = 193 bits (490), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 215/943 (22%), Positives = 384/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLAKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + F +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRFARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R P D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVR----PAVVMQGSAXXQDDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 193 bits (490), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 154/586 (26%), Positives = 267/586 (45%), Gaps = 79/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + ++G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNMERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I+K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTIYK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE-------YTFPSKDVYISGGKLISAEGSS--------- 579
+W+GKQ+F++++P ++ V G L+ E
Sbjct: 503 --PRPIWTGKQVFNLIIPKQINLIRTSAWHSESESGVITPGDTLVRIEKGEVISGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + +
Sbjct: 561 TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGD------TIADAA 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALS 696
M+ I + +A++ + L+ A + + G + S+E + + L+
Sbjct: 615 TMEVINETISKAKN-----------EVKMLIKAAQEKQLEAEPGRTMMESFENRVNQVLN 663
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
+A DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 664 KARDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK-- 713
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 714 -RIPYGFDGRTLPHFTKDDKGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDT 767
Query: 817 NADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 768 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|397135900|gb|AFO11445.1| RNA polymerase I, partial [Scheffersomyces spartinae]
Length = 872
Score = 192 bits (489), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 273/574 (47%), Gaps = 63/574 (10%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID AL+ G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWRVERHLMDDDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+I+ QS + ++ + QD+L + + + + Q+ + + P+ + P +
Sbjct: 324 IISPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMLYWIPNWDGVIPPPAVMKPKQ 383
Query: 541 VWSGKQLFSMLLPPDF---------EYTFP-SKDVYISGGKLI-SAEGSSWLRDYEGNLF 589
+W+GKQL SM +P + + P K + I G+++ + G L
Sbjct: 384 LWTGKQLLSMAIPKGIHLQRFDDGRDLSCPKDKGMLIVDGEIMFGVVDKKTVGATGGGLI 443
Query: 590 QYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V +++A Q+V+ WL G ++ + D + + M I +R
Sbjct: 444 HTVFREKGPQVCAQMFSAIQKVVNFWLLHNGFSIGIGDTIADAET------MKTITSTIR 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+D Q++++D+ +N L + E +L+ S+E S L+QA A +
Sbjct: 498 EAKDKV--QEIILDAQLNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEM 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
++++L N++ M +GSKG+ + + Q S C+G Q R P
Sbjct: 549 NLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFGDRTL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R++ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 653 RIIKALEDIMVHYDGTTRNSLGD-IIQFVYGEDG 685
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 192 bits (489), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 156/586 (26%), Positives = 270/586 (46%), Gaps = 78/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
I+ ++GKR D R V+T DPN+ + E+G+P +A L E + +N R+ I +
Sbjct: 253 IRGNLMGKRVDFSARTVITPDPNLSVNEVGVPRTIALNLTYPEVVTPYNIARMRQLIENG 312
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G Y+ R G R L+ G + R + DGD+V+ NR PS+H S+
Sbjct: 313 PMKHPGAKYILRDDGTRTDLRYAKKPSELHLDYGYKVERHVQDGDVVIFNRQPSLHKMSM 372
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +++LP S+ +N +P++ DFDGD ++ ++ Q+ R E+ E++ + +Q+++
Sbjct: 373 MGHRIRILPWSTF-RLNLSVTTPYNADFDGDEMNMHVAQSPETRAEIEEIMMVPRQIVSP 431
Query: 486 QSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
Q+ + ++ + QDSL L + D+ + L M L P + +W+G
Sbjct: 432 QANKPVMGIVQDSLLGTKLFTKRDTFIERDLVMNVLMWLSTFEGKVPKPAMLKPKVLWTG 491
Query: 545 KQLFSMLLPP---------------DFEYTFPSKD----VYISGGKLISA------EGSS 579
KQ+FSML+PP + E+T+ V I G++IS GSS
Sbjct: 492 KQIFSMLIPPVNLLRKSAQAPERELNEEFTYTDTRVCSLVCIENGEVISGIICKQTVGSS 551
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
G+L + + + +FL + Q V+ +WL RG +V + D + + K
Sbjct: 552 -----SGSLVHVVWNEHGHEATRNFLDSVQAVVNQWLLSRGFSVGIGD------TIADKE 600
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALS 696
M +I + A+ + + L+ + + G L ++E + ++AL+
Sbjct: 601 TMQQITRTIAAAK-----------AQVASLIKQAQNHNLEPQPGRTLMETFESKVNSALN 649
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
A A K +++ N++ M AGSKG+ + + Q C+G Q+
Sbjct: 650 TARDKAGKSAEQSLRS--------SNNVKEMVTAGSKGSFINIAQMIACVGQQNVEGK-- 699
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P+ A D + A+ + VENS+L GLNP E F H++ R+
Sbjct: 700 -RIPYGFRNRTLPHFVAADYSPEARGF-----VENSYLRGLNPQEFFFHAMGGREGLIDT 753
Query: 817 NADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 754 AVKTSETGYIQRRLIKAMEDVMVRYDGTVRNSLGD-VIQFLYGEDG 798
>gi|384246317|gb|EIE19808.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1328
Score = 192 bits (489), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 173/579 (29%), Positives = 261/579 (45%), Gaps = 70/579 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------- 369
GKR D R V++ DPN+ + E+GIP VA L ER+ S N RL CI
Sbjct: 309 GKRVDFSGRTVISPDPNLAINEVGIPMHVAVILTFPERVTSHNISRLQKCIMNGPGVWPG 368
Query: 370 -SFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+F L+ K K G R R L++GD++ R L DGDIVL NR PS+H S++A
Sbjct: 369 ANFVLVAKDGARKSLKYG-DRRRTAAELKIGDVVERHLRDGDIVLFNRQPSLHRMSIMAH 427
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+++P + N C+P++ DFDGD ++ ++PQ AR E +EL+ + + L +SG
Sbjct: 428 RARIMPWRTF-RFNECVCNPYNADFDGDEMNVHVPQTEEARAEASELMGVMRNLCTPKSG 486
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGK 545
L++ QD LT+A LL S Q+ QL F + D+ + + +W+GK
Sbjct: 487 EILIAATQDFLTSAFLLTSKDRFYSRTQVAQLACFMGDGMDAVDLPQPALLKPLELWTGK 546
Query: 546 QLFSMLLPPDFEYTF-----PSKDVYISG-GKLISAEGSSWLRDYE-------------G 586
QLFSML+ P+ ++ Y+ G G + +G ++ G
Sbjct: 547 QLFSMLIRPNSLTRLLVNLETAEKTYLKGSGVMCPRDGFVVFQNSTLMCGRLGKVTLGGG 606
Query: 587 N---LFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
N LFQ L DF A + LS LS ++ H S I +D++
Sbjct: 607 NKSGLFQVLAN-------DFSSEAAGAVMRRLS------KLSARFIGEHGFS--IGVDDV 651
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
LR Q+ +Q +DS + L E+Q +L Q+ +
Sbjct: 652 TPALRLLQE----KQATIDSSYQECQDKIAEYKSGKLALLAGCNEEQ---SLEQSVMGVL 704
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+ ++ K NS L M + GSKG+ + + Q C+G Q S++ R P
Sbjct: 705 NRIRNTASDVCMKTLQHHNSPLIMSQCGSKGSPINIAQMVACVG-QQSVS--GRRCPDGF 761
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
GD T K ++ + SF +GL+P E F H++ R+
Sbjct: 762 KDRTLPHFPPGDRTPEGKGFVAA-----SFYSGLSPTEFFFHTMAGREGLVDTAVKTAET 816
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G ++RRLM + DL T YD TVRN+ G IVQ +Y +G
Sbjct: 817 GYMSRRLMKSLEDLYTHYDSTVRNSAGG-IVQLTYGDDG 854
Score = 53.5 bits (127), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ N +++CS+CG ++ C GHFG+IK + H +L L IC C +I
Sbjct: 34 DPRLGVSNRSSKCSTCG-QNLADCTGHFGYIKLWLPVFHIGYLKSTLTTLQCICKTCSSI 92
>gi|357289799|gb|AET73112.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 12T]
gi|357292599|gb|AET73935.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 14T]
Length = 1512
Score = 192 bits (489), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 221/921 (23%), Positives = 402/921 (43%), Gaps = 141/921 (15%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGAVSEVTN----------PRLGLPNPTNECSSCG 62
PS I+ GI + + E +K SV EI N PR+G+ P C + G
Sbjct: 9 PSKII-GIQFSLLSPHEIQKGSVAEIVNRDTYINNKPVLGGLFDPRMGILEPGFICPTDG 67
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKG---------- 112
D G+FG I + + +L+ I K+L +C KC + ++ K
Sbjct: 68 L-DYIQTPGYFGHINLARPVFYIQYLTTIMKILRCVCIKCSKLLIDKDKYSYLLNCNSDE 126
Query: 113 ------AGSSRKEQPRVCKYCVRNP-----------------AQWYPR----MRFKLSSK 145
A +S+K++ C C +N A+W + ++ S
Sbjct: 127 RWNKVFALASKKKR---CGECCKNGCGCLQPKLKKEGLATLIAEWNEKEEEIKNYEFSKD 183
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
D +GK I+ I E + K +K+ D+ F+ F +S+ + + C+ ++
Sbjct: 184 DGTGK-LIMKLIPEIVIKILRKISDEDVNFMGF------SSIWSRPEWMICQTMAVPPPA 236
Query: 206 VDPSIREEFIL-SKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYR 264
V PS++ + S+D + N + E ++ D+W+ L+ V
Sbjct: 237 VRPSVKHDSQQRSEDDLTHIIVNIIKANKTLQEKIEQNANSN--VIDDWSTVLQYYV--- 291
Query: 265 GRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDD 324
+ LV + + +S R A ++ D N G R ++ ++GKR D
Sbjct: 292 ------ATLVDNKIPGVAAVAQRSGRPLKA-IK-----DRLNGKGGR-VRGNLMGKRVDF 338
Query: 325 CFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISF--RLLEKGELYVC 382
R V+T DPN+ + E+G+P ++A+ L +NS N + L I + ++Y
Sbjct: 339 SARSVITPDPNLSISELGVPLKIAKNLTKPVTVNSRNKQYLMTFIKNGPDVYPGAKIYEK 398
Query: 383 RKGGLVRIRRID----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
+ G + +R +D LE GD ++R + +GD VL NR P++H S++ +V+
Sbjct: 399 KNGDCISLRYVDRDSIVLEDGDKVHRHVLNGDPVLFNRQPTLHRMSMMCHKARVMMQGDT 458
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N P++ DFDGD ++ ++PQ + EL L + +I+ + ++++ + QDS
Sbjct: 459 FRMNVADTKPYNADFDGDEMNLHMPQDEESETELRLLATVKNNIISPANNKSIVGIFQDS 518
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEY 558
L + +L + + L M H+ + + +KD + S + L +L P+F
Sbjct: 519 LLSTYLFSREDITFDSRTAMNLLMH--HKKIDLNAIDFTKDRISSFEILSQIL--PNFSL 574
Query: 559 TFPSK-----DVYISGGKLISAEGSSWLRDY-----EGNLFQYLIKR-YRDKVLD----F 603
+ +K D Y + ++ + +R + G+ + L++R Y D +D F
Sbjct: 575 KYKTKRFKDDDDYKTSNNVLEINNGTIVRGHIEKGILGDTTRGLLQRIYNDFGVDASQEF 634
Query: 604 LYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDS 663
+ + Q+++ E++ + G +V +SDL +A ++KI+ E+ Q + L+ ++
Sbjct: 635 IDSLQDIVTEYMKIHGYSVGISDL-IADKDTNQKIV--EVI-----TQKKSEVKSLIDET 686
Query: 664 HMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNS 723
H+ + + +E Q + L++AS +A K L K+N
Sbjct: 687 HLGIFENKTGKPNVE-------EFETQVNNILNKASFEAGK--------LGRTNLDKNNR 731
Query: 724 LLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY 783
+ M AGSKG+ L + Q CLG Q+ R P+ D++ A+ +
Sbjct: 732 FVIMVNAGSKGSDLNISQMISCLGQQNVDGK---RIPYGYENRTLPHFTKFDDSPEARGF 788
Query: 784 IPSAVVENSFLTGLNPLECFIHSVTSR----DSSFSDNADLPGTLTRRLMFFMRDLCTAY 839
VE+SF+ GL P E F H++ R D++ + G + RRL+ M D+ Y
Sbjct: 789 -----VESSFIGGLRPEELFFHAMGGRVGLIDTAVKTST--TGYIQRRLIKSMEDIMIGY 841
Query: 840 DGTVRNAYGNQIVQFSYNIEG 860
D TVRN N+I+Q+SY +G
Sbjct: 842 DMTVRNN-KNKIIQYSYGDDG 861
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ ID T+++ +I G++AG Q AI G I HL ++A+ +
Sbjct: 1317 LEFIDKTKTYTTDIMEIYNVLGVEAGRQAIFNEFSEAIEFDGAYINYHHLTMLADRMCCN 1376
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
+ V + G+ ++ P +A F F+KAA+ G +D ++G + G+
Sbjct: 1377 DKMVSIFRHGI-----NNDDVGPIAKASFEETPEMFLKAARHGELDAMRGVSANIMCGQE 1431
Query: 1249 PSVGTGGHFDIIYSGEGRTLSKP 1271
GT F ++ + +KP
Sbjct: 1432 GYYGTSS-FKLLVDMDKMMTNKP 1453
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 192 bits (489), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 165/579 (28%), Positives = 263/579 (45%), Gaps = 76/579 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
+++ ++GKR + R V+T DP + L E+G+P VA L E + +N +RL + +
Sbjct: 345 VRNNLMGKRVNFSARTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAVRNG 404
Query: 372 RLLEKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G L+V R G VR LE G ++ R L +GD+VL NR PS+H S+
Sbjct: 405 PNAYPGALFVIRNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHRMSI 464
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V++LP S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+A+ K +++
Sbjct: 465 MGHRVRILPYSTF-RMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIVSP 523
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q+ R ++ + QDSL L L + L + PH R +P I K +W
Sbjct: 524 QANRPVMGIVQDSLLGCMLFTLRDTFLEEDTVFNLLLHLPHFDGRIPAPAILK--PRPLW 581
Query: 543 SGKQLFSMLLP------------PDFEYTF--PSKD-VYISGGKLISA------EGSSWL 581
+GKQ+FS+LLP PD E T PS V I G+LI+ GSS
Sbjct: 582 TGKQIFSLLLPDGVNLERLSNGHPDHERTIMTPSDTRVLIQNGELITGIVDKRTVGSS-- 639
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L K ++ + Q ++ WL GM++ + D +H+ M
Sbjct: 640 ---AGSLIHVTWKESGPERTSQLISDIQLLINYWLMQNGMSIGIGDCIADAHT------M 690
Query: 641 DEIFYGLREAQDTC-NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
I ++EA+D +L + + ES + L+ + ++ +Q S
Sbjct: 691 AAINRTIQEAKDEVRQLIRLAQEGRLERQPGKTMLESFEACVNRVLNSARDKAGGFAQES 750
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
+ N++ M AGSKG+ + + Q C+G Q+ R
Sbjct: 751 L------------------LPSNNIKRMVSAGSKGSFINVSQIVACVGQQNVEGK---RI 789
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P+ D + A+ + VENS+L GL P E F H++ R+
Sbjct: 790 PYGFRRRTLPHFVVDDLSPEARGF-----VENSYLRGLTPEEVFFHAMGGREGLIDTAVK 844
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
G + RRLM M D+ YDGTVRN+ G+ ++QF Y
Sbjct: 845 TAETGYIQRRLMKAMEDIRIEYDGTVRNSLGD-VMQFLY 882
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 192 bits (489), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 219/950 (23%), Positives = 391/950 (41%), Gaps = 170/950 (17%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSS 60
P + + G+ + E +++SV E G + + +PR G+ T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKE 108
C A + C GHFG I+ + H FL K+L +C PK K I
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL-- 130
Query: 109 RQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDE 159
K G +K V C +N + M K + G + E
Sbjct: 131 -SKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKD 219
++ + +L + W + D+Q++ + +LS ++V + K + S E F+L +
Sbjct: 190 RIRRSGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGME 239
Query: 220 APFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------ 266
+ + PV P + R V + + D+ T L +V +
Sbjct: 240 PRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQ 295
Query: 267 DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKD 315
+ +H++ + +K+ + H L ++ +K ++ K + G ++
Sbjct: 296 NGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQ-RLKGKEG--RVRG 352
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE 375
++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL + +
Sbjct: 353 NLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQ 412
Query: 376 -KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G Y+ R G RID L+ G + R + DGDIV+ NR P++H S
Sbjct: 413 YPGAKYIIRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMS 468
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 469 MMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVT 527
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSV 541
QS R ++ + QD+LTA + V L ++ L MF + P I K +
Sbjct: 528 PQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPL 585
Query: 542 WSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWL 581
W+GKQ+FS+++P PD E + P K + K++ G L
Sbjct: 586 WTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSL 645
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + Y+ Q V+ WL + G T+ + D S +
Sbjct: 646 GTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTY 699
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+I +++A+ + +++ +H N L + + ++E Q + L+ A
Sbjct: 700 QDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQ-------TFENQVNRILNDARD 750
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
+ A K S+ N+ +M +G+KG+ + + Q +G Q+ P F
Sbjct: 751 KT--------GSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGF 802
Query: 758 R---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
+ PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 803 KHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREG 846
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 847 LIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 192 bits (489), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 224/926 (24%), Positives = 385/926 (41%), Gaps = 176/926 (19%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR G + ++ C +C A C GHFG I+ + H FL K+L +C C +
Sbjct: 57 DPRQGPVDRSSRCQTC-AGTVNECPGHFGHIELARPVFHIGFLVKSIKILRCVCFYCSKL 115
Query: 106 RKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLS-------SKDL----SGKTAII 154
+K P+V + R+R +L SK++ G+ A
Sbjct: 116 L---------IKKSDPKVIDIISKTRG----RLRVRLQHIYDLCKSKNICQNDDGEDA-- 160
Query: 155 VEIDEK-----------LSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKV-LSCKQVSYL 202
+DEK + ++N W I D+Q+ RK+ L+ ++V +
Sbjct: 161 EGLDEKKEHSGCGRHQPIIRRNGLELTAEWKKINEDSQE--------RKINLTAERVYEI 212
Query: 203 LKDVDPSIREEFILSKDAPF-------LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTR 255
K + S + +L D F + C PV P + R + V H + + D+ T
Sbjct: 213 FKRI--SDEDSEVLGMDPRFARPDWMIITCLPVPPLHVRPSVVMHGSARSQ----DDLTH 266
Query: 256 HLKKMVDYRG---RDIEL---SHLVQDCLKISKLHLDKSSRKDSAEV--------RQKKN 301
L ++ R+ +H++ + ++ + H+ + + + R K+
Sbjct: 267 KLADIIKANNNLQRNESCGAPAHVITEDTRMLQFHVTTLTDNEVPGMPKAMQKSGRPLKS 326
Query: 302 IDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWN 361
I I+ ++GKR D R V+T D N+++ ++G+P +A+ L E + N
Sbjct: 327 IKQRLKGKEGRIRGNLMGKRVDFSARTVITPDSNLEIDQVGVPRSIAQTLSYPEIVTPLN 386
Query: 362 WERLSVCISFRLLE-KGELYVCRKGG-----LVRIRRID-ALELGDIIYRPLTDGDIVLI 414
+R+ V + G YV R+ G R R D L GD + R + + DI++
Sbjct: 387 IDRMYVLVRRGPDHYPGAKYVIRESGERINLKFRASRDDLTLHFGDKVERHIQNDDIIVF 446
Query: 415 NRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
NR P++H S++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ +R E+TE
Sbjct: 447 NRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHVPQSLESRAEITE 505
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSP 531
+ + +Q++ QS + ++ + QDSLTA V L + L M+ P+ + P
Sbjct: 506 ICMVPRQIVTPQSNKPVMGIVQDSLTAVRKFTMRDVFLEKEVVMNLLMWLPNWNGKMPQP 565
Query: 532 DIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKL 572
I + +W+GKQ+FS+++P PD E P K V I G++
Sbjct: 566 AILR--PKELWTGKQIFSLIIPGNVNLIRTHSTHPDDEDKGPYKFISPGDTKVLIEHGEV 623
Query: 573 ISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLA 630
IS L G+L + +V Y Q V+ WL + G ++ + D
Sbjct: 624 ISGILCKRTLGTSSGSLVHVIFNELGHEVARQFYGNIQTVVNNWLLIEGHSIGIGDS--- 680
Query: 631 SHSCSRKILMDEIFYG------LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684
+ DE Y L+ QD +++ +H + L + ++ + +
Sbjct: 681 --------IADEATYQDIQSTILKAKQDVV---EVIEKAHNDELEPTPGNTLRKTFENQV 729
Query: 685 ---LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQ 741
L+ + ++ + +Q S+ F N+ AM AGSKG+ + + Q
Sbjct: 730 NRILNDARDKTGSSAQKSLSNF------------------NNFKAMVVAGSKGSKINISQ 771
Query: 742 HSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSF 793
+G Q+ P FR PH + Y P + VENS+
Sbjct: 772 VIAVVGQQNVEGKRIPFGFRHRTLPHFIQ----------------DDYGPESRGFVENSY 815
Query: 794 LTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQI 851
L GL P E F H++ R+ G + RRL+ M + YDGTVRNA Q+
Sbjct: 816 LAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEGVMVHYDGTVRNA-NMQL 874
Query: 852 VQFSYNIEGTSTPTGEIGDQPVGSLS 877
+Q Y +G E D P LS
Sbjct: 875 IQLCYGEDGLDGSAIEFQDMPSLKLS 900
>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
Length = 872
Score = 192 bits (489), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 158/579 (27%), Positives = 272/579 (46%), Gaps = 67/579 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIQKLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E++++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAEMSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + Q+ + + P+ P +FK +W
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDSFIEYEQVMNMLYWIPNWDGVIPPPAVFK--PKPLW 385
Query: 543 SGKQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQY 591
SGKQL SM +P D KD + + G + + G L
Sbjct: 386 SGKQLLSMAIPKGIHLQRFDDGRDMLSPKDLGMLVVDGEIIFGVVDKKTVGATGGGLIHT 445
Query: 592 LIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+++ +V L+++ Q+V+ WL G ++ + D + + K M ++ ++EA
Sbjct: 446 VMREKGPQVCAQLFSSIQKVVNYWLLHNGFSIGIGD------TIADKDTMRDVTTTIQEA 499
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+ Q++++D+ N L + E +L+ S+E S L+QA A + ++
Sbjct: 500 KQKV--QEIIMDAQQNKL----EPEPGMTLRE---SFEHNVSRILNQARDTAGRSAEMNL 550
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
++L N++ M +GSKG+ + + Q S C+G Q R P
Sbjct: 551 KDL--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFGDRTLPH 599
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D + +K + VENS+L GL P E F H++ R+ G + RRL
Sbjct: 600 FTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 654
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
+ + D+ YDGT RN+ G+ I+QF Y +G + E
Sbjct: 655 VKALEDIMVHYDGTTRNSLGD-IIQFVYGEDGIDATSVE 692
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 192 bits (489), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 158/572 (27%), Positives = 268/572 (46%), Gaps = 68/572 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + E
Sbjct: 351 LMGKRVDFSARTVITGDPNLELDEVGVPFSIARTLTYPERVTPYNILYLQELVRNGPNEY 410
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L RR D L+ G I+ R L DGD VL NR PS+H S++ V
Sbjct: 411 PGARYVVRDTGERIDLRYNRRADTFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRV 470
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R E++++ ++ +Q+++ Q+
Sbjct: 471 KLMPYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEETRAEMSQIASVTRQIVSPQANSP 529
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
++ + QD+L L L Q+ + M+ P + P + +W+GKQ+ S
Sbjct: 530 VMGIVQDALCGVRKLTLRDTFLDSKQVANILMWVPGWDGIVPTPAIMKPKPLWTGKQILS 589
Query: 550 MLLPPDF--------EYTFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLIKRYRD 598
+ +P + + P D + G + A S + +G L ++I R +
Sbjct: 590 LCIPRGINVFRSNEQKSSAPVDDAGVCIEDGNIMYGAIDKSTVGKSQGGLV-HVIFREKG 648
Query: 599 KVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
++ DFL Q V+ W+ G ++ + D + + K M I + +A+D
Sbjct: 649 HIICKDFLSGLQVVVNYWMLHHGFSIGIGD------TIADKSTMAYITERIGDAKDKV-- 700
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
+ ++ S + + A+ + R S+E + L+QA K +++
Sbjct: 701 -KGIIQSAESNQLEAQAGMTIRE------SFEASVNMELNQARDQVGKSAQHSLKD---- 749
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF---PHELSCAAWNR 770
DN++ M AGSKG+ + + Q S C+G Q P F++ PH + +
Sbjct: 750 ----DNNVKQMVVAGSKGSFINISQMSACVGQQSVEGKRIPFGFKYRTLPH------FTK 799
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
G + VENS+L GL P E F H++ R+ G + RRL
Sbjct: 800 DDFGPESR--------GFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYVQRRL 851
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + D+ YDGTVRN+ G+ I+QF+Y +G
Sbjct: 852 VKALEDIMVHYDGTVRNSLGD-ILQFAYGEDG 882
Score = 47.0 bits (110), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 20 ISLGISTDTEKEKLSVMEI---GAVSEVT---------NPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E + LSV +I + E T +PR+G + +C +CG +
Sbjct: 20 VQFGLMSPEEMKSLSVAQIIHPEVIDESTGRPRQGGLMDPRMGTIDRNFKCQTCG-EGMA 78
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GHFG I+ H FL+ I K++ SIC C
Sbjct: 79 ECPGHFGHIELARPAFHIGFLTKIKKIIESICVNC 113
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 272/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 345 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEH 404
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 405 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 460
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 461 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSP 519
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P +S +W+G
Sbjct: 520 QSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLYWIPNWDGVIPPPAIVSPKPLWTG 579
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D + KD + + G + + G L ++
Sbjct: 580 KQLLSMAIPKGIHLQRFDDGKNLLSPKDNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVM 639
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D S + M ++ +++A+D
Sbjct: 640 REKGSQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADSST------MRDVTTTIQDAKD 693
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 694 KV--QEIILDAQSNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 744
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 745 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 793
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 794 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 848
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDG+ RN+ G+ I+QF Y +G
Sbjct: 849 ALEDIMVHYDGSTRNSLGD-IIQFVYGEDG 877
Score = 45.4 bits (106), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + +C +CG +D C GHFG I+ + H F++ I K+ +C C
Sbjct: 54 LNDPRLGSIDRNFKCQTCG-EDMAECPGHFGHIELTKPVFHIGFIAKIKKVCECVCMHC 111
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 215/953 (22%), Positives = 392/953 (41%), Gaps = 176/953 (18%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSS 60
P + + G+ + E +++SV E G + + +PR G+ T C +
Sbjct: 14 PLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQT 73
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKE 108
C A + C GHFG I+ + H FL K+L +C PK K I
Sbjct: 74 C-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA- 131
Query: 109 RQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDE 159
K G +K V C +N + M K + G + E
Sbjct: 132 --KSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQP 189
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKD 219
++ + +L + W + D+Q++ + +LS ++V + K + S E F+L +
Sbjct: 190 RIRRSGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGME 239
Query: 220 APFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------ 266
+ + PV P + R V + + D+ T L +V +
Sbjct: 240 PRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQ 295
Query: 267 DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKD 315
+ +H++ + +K+ + H L ++ +K ++ K + G ++
Sbjct: 296 NGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQ-RLKGKEG--RVRG 352
Query: 316 VVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE 375
++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL + +
Sbjct: 353 NLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQ 412
Query: 376 -KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G Y+ R G RID L+ G + R + DGDIV+ NR P++H S
Sbjct: 413 YPGAKYIIRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMS 468
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 469 MMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVT 527
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSV 541
QS R ++ + QD+LTA + V L ++ L MF + P I K +
Sbjct: 528 PQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPL 585
Query: 542 WSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWL 581
W+GKQ+FS+++P PD E + P K + K++ G L
Sbjct: 586 WTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSL 645
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + Y+ Q V+ WL + G T+ + D S +
Sbjct: 646 GTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTY 699
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQ 697
+I +++A+ + +++ +H N L + ++ + + L+ + ++ + +Q
Sbjct: 700 QDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQ 757
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
S+ + N+ +M +G+KG+ + + Q +G Q+ P
Sbjct: 758 KSLSEY------------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 799
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
F+ PH + Y P + VENS+L GL P E F H++
Sbjct: 800 FGFKHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGG 843
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 844 REGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
Length = 871
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 173/628 (27%), Positives = 285/628 (45%), Gaps = 82/628 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +LS + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLALDEVGVPRSIAKTLTYPEMVTPYNIHKLSELVRNGPDEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R + DGD VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIRLQYGWKVERHIVDGDAVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ + Q+I+
Sbjct: 269 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRTELSQICMVPLQIISP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS R ++ + QD+L + + + + + M+ P + P + +W+G
Sbjct: 328 QSNRPVMGIVQDTLCGVRKMTVRDNFIGYQETMNIMMWVPDWDGIIPPPAVLKPKPLWTG 387
Query: 545 KQLFSMLLPPDFEYT--------FPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIK 594
KQ+ SM++P KD + I G+++ ++I
Sbjct: 388 KQILSMVIPKGINLQRFDEGTTLMNPKDNGMLIENGEIMFGVVDKKTVGATAGGLVHIIM 447
Query: 595 RYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
R + + DF Q V+ WL G ++ + D + + M I + EA+
Sbjct: 448 REKGPYICRDFFGGVQTVVNYWLLHNGFSIGIGDTIADADT------MRHITKTIDEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q L+ ++ N L E +L+ S+E + S AL+QA A + ++N
Sbjct: 502 QV--QNLINEAQHNVLA----PEPGMTLRE---SFEHKVSRALNQARDTAGRSAEMSLKN 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFR---FPHELSCA 766
DN++ M AGSKG+ + + Q S C+G Q P F+ PH
Sbjct: 553 --------DNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFKDRTLPH----- 599
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + +K +I ENS+L GL P E F H++ R+ G +
Sbjct: 600 ----FTKDDYSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 650
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEA 884
RRL+ + D+ YD TVRN+ G+ I+QF Y +G E Q V ++ S+A
Sbjct: 651 QRRLVKALEDVSVEYDSTVRNSLGD-IIQFIYGEDGIDGTAVE--KQTVDTIPG---SDA 704
Query: 885 AYSALDQPISLLETSPLLNLKNVLECGS 912
A+ + + + + S L ++LECG+
Sbjct: 705 AFERRYR-VDVTDRSKALK-PSLLECGN 730
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
Length = 994
Score = 192 bits (488), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 164/575 (28%), Positives = 269/575 (46%), Gaps = 74/575 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L E+G+P VA L ER+ +N +L + E
Sbjct: 261 LMGKRVDFSARTVITGDPNLELDEVGVPISVAMNLTYPERVTPFNIHKLQELVRNGPNEY 320
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 321 PGARYVVRDTGERIDLRYNKRTDAFLQHGWIVERHLRDGDYVLFNRQPSLHKMSMMSHRV 380
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + Q+I+ Q+ +
Sbjct: 381 KLMPYST-FRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPLQIISPQANKP 439
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L Q+Q + ++ P +P I K +WSGKQ+
Sbjct: 440 VMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGHVPTPAIIK--PKPLWSGKQI 497
Query: 548 FSMLLP--------PDFEYTFPSKD--VYISGGK-LISAEGSSWLRDYEGNLFQYLIK-R 595
SM++P PD + + P D + I G+ L + +G L + + +
Sbjct: 498 LSMVIPRGINIHXAPDPKSSNPVFDDGMLIDNGEILFGIMDKKTVGATQGGLIHVVFREK 557
Query: 596 YRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
D Q V+ WL G ++ + D S + D+I A+
Sbjct: 558 GPDATRQVFTGIQIVVNYWLYHNGFSIXIGDTIAGPKVMS--FITDKI------AEKKQK 609
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNL 713
+++ D++ + L R++ G + S+E L++A ++ ++
Sbjct: 610 VSEIIDDAYHDRL---------RAMPGMTIRESFENMVERELNRARDESGQY-------- 652
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAA 767
A K +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 653 AQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGKRIPFGFRHRTLPH------ 706
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + A+ + VENS+L GL P E F H++ + G +
Sbjct: 707 ---FNKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMGGXEGLIDTAVKTAETGYIQ 758
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 759 RRLVKALEDVMVHYDGTVRNSLGD-LIQFIYGEDG 792
>gi|66818062|ref|XP_642724.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
gi|74860514|sp|Q86AQ5.1|RPC1_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60470813|gb|EAL68785.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
Length = 1450
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 236/947 (24%), Positives = 386/947 (40%), Gaps = 171/947 (18%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + +LG + C++CG C GHFG+IK + H +L +I +L IC C
Sbjct: 53 VLDNKLGTSDKQAMCTTCGLSIVD-CVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCS 111
Query: 104 T-----------IRKERQKGAGSSRKE--------QPRVCKYCVRNPAQWYPRMRFKLSS 144
T +RK R K + +++ + R K C++ S+
Sbjct: 112 TILLNEEKKQYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCG-----------ST 160
Query: 145 KDLSGKTAIIVEIDEKLSKKNKKLPDDYWGF---IPFDAQ------QEENSVKPNRKVLS 195
+ K+ I EK K + L D Y + I ++ + + ++ + P +
Sbjct: 161 NGMIKKSGAFKIIHEKYKGKTESLQDYYALYDDAIKYNPEMKSHIKKAQDDLNPLVALNL 220
Query: 196 CKQVSYL---LKDVDPSIR--EEFILSKD-APFLKCFPVTPNN-----------HRVTEV 238
K++SY + ++DP I E IL+ P + P P + +++E+
Sbjct: 221 FKKISYQDIEIMNMDPVIGRPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEI 280
Query: 239 PHAFSH--------EKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSR 290
H H E ++W Y D+ L +K +K S R
Sbjct: 281 LHINEHIRSNVDRAEMSAIMEDWDYLQASCAIYINSDVPGLPLQ---MKPTKAVRGLSQR 337
Query: 291 KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAER 350
R + N+ GKR D R V++ DPN+ + E+ +P +A
Sbjct: 338 LKGKTGRFRGNLS---------------GKRVDFSGRTVISPDPNLNIDEVAVPQLIALT 382
Query: 351 LQISERLNSWNWERLS-VCISFRLLEKGELYVCRKGGLV-------RIRRIDALELGDII 402
+ ER+ +N ERL I+ G Y+ G+ R + L++GDI+
Sbjct: 383 MTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADGVKKWLKFGNREKFAAELKIGDIV 442
Query: 403 YRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYI 462
R + DGDI+L NR PS+H S+++ +V+P ++ N C+P++ DFDGD ++ ++
Sbjct: 443 ERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTL-RFNECVCTPYNADFDGDEMNIHL 501
Query: 463 PQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM 522
PQ AR E T L+ + LI ++G L++ QD LTA++L+ + + +
Sbjct: 502 PQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAF---YERYRFAL 558
Query: 523 FCPH--------RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEY----TFPSKD-VYISG 569
C H P I K + +W+GKQ+F +LL P + F ++ Y
Sbjct: 559 MCTHFADANEHIDLPPPAILKPVE--LWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKN 616
Query: 570 GKLISAEGSSWLRDYE-------------GN---LFQYLIKRYRDKVLDFLYAAQEVLC- 612
+ +G + R+ E GN LF L++ + + LC
Sbjct: 617 LYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCA 676
Query: 613 EWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK 672
+L +G ++ + D+ A +K RE +T +++ V FL K
Sbjct: 677 RFLGDQGFSIGIPDIKPAEDLDRKK----------REIIETA-YKKCAV-----FL---K 717
Query: 673 DSESTRSLQ-----GEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
D ES SLQ ++E + + LSQ D K D+ N NS L M
Sbjct: 718 DYESG-SLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNY--------NSPLIM 768
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
GSKG+ + + Q C+G Q R P+ + + AK+
Sbjct: 769 GLCGSKGSNINIAQMICCVGQQIVNGT---RIPNGFTNRTTPHFK-----HFAKNPKSKG 820
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRN 845
V NSF TG+ P E F H++ R+ G + RRLM + DL T YD TVR+
Sbjct: 821 FVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRD 880
Query: 846 AYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQP 892
+ G IVQF Y +G E D+PV L A ++ ++P
Sbjct: 881 SIGG-IVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSVKSTRQCRNEP 926
>gi|170584528|ref|XP_001897051.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
gi|158595586|gb|EDP34129.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
Length = 1404
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 234/916 (25%), Positives = 374/916 (40%), Gaps = 145/916 (15%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG +C +C ++ C GHFG+I + H F ++L IC C
Sbjct: 58 DPRLGTCQKHTDCQTC-KQNLVDCVGHFGYIDLAIPVFHVGFFRLTIQMLQCICKFC--- 113
Query: 106 RKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRM-----RFKLSSKDLS------GKTAII 154
A EQ + + V NP Y R R +SK ++ K I+
Sbjct: 114 ------SAMLITGEQKKAFLHQVNNPNLDYLRRKALHKRIVAASKKITVCNRCGHKNGIV 167
Query: 155 VEIDEKLSK--KNKKLPDDYWGFIPFDAQQ--EENSVKPNRK--VLSCKQVSYLLKDVDP 208
+ + K + +P D + + AQ+ E ++ P K +L QV L ++
Sbjct: 168 KKAVGAVLKIAHAEVIPADNYSEYVYAAQENKELQNLLPKTKFTLLDPLQVQILFNKIEK 227
Query: 209 S-IREEFILSKDAP------FLKCFPVTPNNHR---VTEVPHAFSH--------EKKLFF 250
I + S D P L PV P R V+EV + E L
Sbjct: 228 EDIPLLMVRSADTPKHPSDVILTRIPVPPCCIRPSVVSEVKSGTTEDDITMKLSEIMLIN 287
Query: 251 DNWTRHLKKMVDYRGRDIELSHLVQDCL-----KISKLHLDKSSRKDSAEVRQKKNIDIS 305
D +H K+ + HL C ++S L D ++ + Q+ +
Sbjct: 288 DVIEKHKKEGSPTKTISETWDHLQVQCALYINSELSGLPPDMQPKRTTRGFTQR----LK 343
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
G + + GKR D R V++ DPN+++ ++G+P VA+ L E +N N ER+
Sbjct: 344 GKQG--RFRGNLSGKRVDFSGRTVISPDPNLRIDQVGVPVYVAKILTFPEIVNKANIERM 401
Query: 366 -SVCISFRLLEKGELYVC-RKGGLVRI-----RRIDA--LELGDIIYRPLTDGDIVLINR 416
+ ++ + G ++ R G R R I A L++GDII R L D D+VL NR
Sbjct: 402 RKLILNGDDIHPGANHIVERATGNKRFLKYGNREITAAQLKVGDIIERHLDDNDVVLFNR 461
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
PS+H S+++ K++P N C+P++ DFDGD ++ ++PQ AR E + L+
Sbjct: 462 QPSLHKISIMSHRAKIVP-GRTFRFNECACTPYNADFDGDEMNLHVPQTYEARAEASLLM 520
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKI 536
+ LI +SG L++ QD +T +LL L++ HRF + I
Sbjct: 521 GVKSNLITPRSGEPLIAAIQDFITGTYLLTHKDSFFPRLEV--------HRFAAAIIDSS 572
Query: 537 SKDS---------------VWSGKQLFSMLLPPDFE-------------YT----FPSKD 564
SK +W+GKQL +++ PD + YT F KD
Sbjct: 573 SKKQQRIRIPPPAILKPVELWTGKQLVELIIRPDVDSKISLNLTTKNKSYTGNEEFCVKD 632
Query: 565 VY--ISGGKLISAEGSSWL--RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRG 619
Y I L+ L + N+F L++ + D +D ++ + +LS RG
Sbjct: 633 SYVIIRNSVLLCGVLDKALLGSGSKTNIFYILLRDFGEDAAVDAMWRLGRMAPVFLSNRG 692
Query: 620 MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRS 679
++ + D+ K L+ E L C+ +++ S K E
Sbjct: 693 FSIGIGDVR------PSKTLLKEKSDLLSNGYKICD----------DYIESLK--EGRLK 734
Query: 680 LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKL 739
Q YE + L + S ++NL S+ N+ L M GSKG+ + +
Sbjct: 735 AQPGCTEYETLEALILKELSAIRDHAGQACLRNL-----SRHNAPLTMAVCGSKGSFINI 789
Query: 740 VQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
Q C+G Q A R P + T AK + VENSF +GL P
Sbjct: 790 SQMIACVGQQ---AISGHRPPDGFEDRSLPHFERRQKTPAAKGF-----VENSFYSGLTP 841
Query: 800 LECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E F H++ R+ G + RRL+ + DLC YDGTVR++ G+ +++F++
Sbjct: 842 TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCVNYDGTVRSSVGD-VIEFTFG 900
Query: 858 IEGTSTPTGEIGDQPV 873
+G E D V
Sbjct: 901 EDGLDPALMEAKDGGV 916
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R++ +N + GI+A ++ + S ++ G + H++++A+ ++ GE
Sbjct: 1257 VDGRRTYFNNALTVADVLGIEAARSSIISEILSTMASHGIGLDQRHVMLLADLMTYRGEV 1316
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ GL ++ S + A F +AA D + G + + G ++
Sbjct: 1317 LGITRNGLVKMKE-----SVLLLASFEKTADHLFEAAFFSQEDKICGVSECIILGTPITI 1371
Query: 1252 GTGGHFDIIYS-GEGRTLSKPVDVY 1275
GT G F ++Y G+ T+SK ++
Sbjct: 1372 GT-GLFKLLYDHGKQLTISKMSTIF 1395
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 192 bits (487), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 269/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPSKD-VYISGGKLISAE-GSS 579
+W+GKQ+F++++P + P V I G++IS
Sbjct: 503 --PRPLWTGKQVFNLIIPKQINLIRYSAWHAESETGFITPGDTCVRIEKGEVISGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + + + ++
Sbjct: 561 TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTI--ADAATMEV 618
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ + I E + Q D + ++E R++ S+E + + L++A
Sbjct: 619 INETISKAKNEVKQLIKAAQ---DKQL-------EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPYGFDGRTLPHFTKDDKGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 192 bits (487), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 157/578 (27%), Positives = 271/578 (46%), Gaps = 73/578 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPNI + E+G+P +A L E + +N + L + + +
Sbjct: 291 LMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPTVH 350
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R + +GD+++ NR PS+H S+
Sbjct: 351 PGAKYVIRDTG----ERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPSLHKMSM 406
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ++ + E+ E+ + KQ+++
Sbjct: 407 MGHKVRVMPFSTF-RLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICMVPKQIVSP 465
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L A + LS + + M+ + P I K +W
Sbjct: 466 QSNKPVMGIVQDTLCAIRKFTKRDCFLSKDLVMNILMWVKDWDGKIPIPCILK--PIPLW 523
Query: 543 SGKQLFSMLLP-------------PDFEYTFPS---KDVYISGGKLISA-EGSSWLRDYE 585
+GKQ+ SM++P PD E T S V I G+L+ + +
Sbjct: 524 TGKQILSMIIPKGINSXNLRHSTHPDGENTDMSPGDTKVLIEDGELLCGIVCKKTVGTAQ 583
Query: 586 GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
L +++ ++ DFL Q V+ WL G ++ + D + + K MD I
Sbjct: 584 QGLIHVIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGD------TIADKDTMDSIT 637
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
+ A++ +++++ + N L + + R S+E Q + L+ A A +
Sbjct: 638 QTINNAKE--RVKEVILSAQQNKL-ECQPGMTIRE------SFENQVNKELNTARDSAGR 688
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
A K S+DN++ M AGSKG+ + + Q + C+G Q+ R P+
Sbjct: 689 S--------AEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQNVEGK---RIPYGFK 737
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D++ ++ + VENS+L GL P E F H++ R+ G
Sbjct: 738 FRTLPHFTKDDHSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETG 792
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 793 YIQRRLVKALEDVMVKYDGTVRNSLGD-ILQFCYGEDG 829
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 192 bits (487), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 157/584 (26%), Positives = 271/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + SP I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPSPAILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE---------------YTFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V+I G+++S
Sbjct: 503 --PRPLWTGKQVFNLIIPKQINLIRYSAWHAESETGFLTAGDTVVHIEKGEVLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + + + ++
Sbjct: 561 TLGTSTGSLIHVIWEEVGPDAARKFLSHTQWLVNYWLLQQGFSMGIGDTI--ADAATMEV 618
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ + I E +QL+ + L ++E R++ S+E + + L++A
Sbjct: 619 INETISRAKNEV------KQLIKAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPYGFDGRTLPHFTKDDKGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 192 bits (487), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 387/943 (41%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L++G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 192 bits (487), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 209/910 (22%), Positives = 379/910 (41%), Gaps = 164/910 (18%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---- 99
+ +PR G+ T C +C A + C GHFG I+ + H FL K+L +C
Sbjct: 24 LMDPRQGVIERTGRCQTC-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCS 82
Query: 100 --------PKCKTIRKERQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGK 150
PK K I K G +K V C +N + M K + G
Sbjct: 83 KLLVDANNPKIKDILG---KSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGD 139
Query: 151 TAIIVE--------IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYL 202
+ E ++ + +L + W + D+Q++ + +LS ++V +
Sbjct: 140 EDLTKEKGHGGCGRYQPRIRRTGLELYAE-WKHVNEDSQEK-------KILLSPERVHEI 191
Query: 203 LKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTR 255
K + S E F+L + + + PV P + R V + + D+ T
Sbjct: 192 FKRI--SDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTH 245
Query: 256 HLKKMVDYRGR------DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQ 298
L +V + + +H++ + +K+ + H L ++ +K ++
Sbjct: 246 KLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKS 305
Query: 299 KKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLN 358
K + G ++ ++GKR D R V+T DPN+ + ++G+P +A + +E +
Sbjct: 306 LKQ-RLKGKEG--RVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVT 362
Query: 359 SWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLT 407
+N +RL + + G Y+ R G RID L++G + R +
Sbjct: 363 PFNIDRLQELVRRGNSQYPGAKYIIRDNG----DRIDLRFHPKPSDLHLQIGYKVERHMC 418
Query: 408 DGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIG 467
DGDIV+ NR P++H S++ V++LP S+ +N +P++ DFDGD ++ ++PQ++
Sbjct: 419 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLE 477
Query: 468 ARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH- 526
R E+ EL + + ++ QS R ++ + QD+LTA + V L ++ L MF
Sbjct: 478 TRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTW 537
Query: 527 --RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKL 572
+ P I K +W+GKQ+FS+++P PD E + P K + K+
Sbjct: 538 DGKVPQPAILK--PRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKV 595
Query: 573 ISAEGS--------SWLRDYEGNLFQY-LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVS 623
+ G L G+L ++ D F Q V+ WL + G T+
Sbjct: 596 VVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIG 655
Query: 624 LSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE 683
+ D S + +I +++A+ + +++ +H N L + ++ + +
Sbjct: 656 IGD------SIADAKTYQDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQ 707
Query: 684 H---LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLV 740
L+ + ++ + +Q S+ + N+ +M +G+KG+ + +
Sbjct: 708 VNRILNDARDKTGSSAQKSLSEY------------------NNFKSMVVSGAKGSKINIS 749
Query: 741 QHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENS 792
Q +G Q+ P F+ PH + Y P + VENS
Sbjct: 750 QVIAVVGQQNVEGKRIPFGFKHRTLPHFIK----------------DDYGPESRGFVENS 793
Query: 793 FLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQ 850
+L GL P E F H++ R+ G + RRL+ M + YD TVRN+ NQ
Sbjct: 794 YLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQ 852
Query: 851 IVQFSYNIEG 860
+VQ Y +G
Sbjct: 853 VVQLRYGEDG 862
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
Length = 1020
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/573 (26%), Positives = 266/573 (46%), Gaps = 70/573 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 281 LMGKRVDFSSRTVITGDPNLSLDEVGVPISIAKILTYPETVTPYNIHKLHQLVRNGPSGH 340
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 341 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESM 396
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R E+++L + +++
Sbjct: 397 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVSP 455
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + ++ P P I K S W
Sbjct: 456 QRNGPLMGIVQDTLVGIYKICRRDVFLTKEQVMNILLWVPEWGGVIPQPAIIKPSPK--W 513
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQL SM +P D + P ++ V++ GG+LI + S N ++I
Sbjct: 514 TGKQLISMAIPKDINFVRPGEEGFSPVGDDGVFVLGGELIFGQFSKKSVGATRNGLVHII 573
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + + F AQ ++ WL G ++ + D ++ +++ +
Sbjct: 574 FNEKGWEIAMKFFNGAQTIVNYWLLHFGFSIGIGDTIPDRNT-------------IQQIE 620
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
D N Q+ V SA ++E L G ++ ++E + S AL+ A +A
Sbjct: 621 DAVNKQKAEV---AEITRSATENE-LEPLPGMNVRETFESKVSKALNAARDEAGSATEKS 676
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN 769
+++L N+ + M ++GSKG+ + + Q + +G Q R P
Sbjct: 677 LKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFKYRTLP 725
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + ++ + VENS+L GL P E F H++ R+ G + RR
Sbjct: 726 HFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 780
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
L+ + D YDGTVRN+ G+ I+QF Y +G
Sbjct: 781 LVKALEDAMAKYDGTVRNSLGD-IIQFVYGEDG 812
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 163/576 (28%), Positives = 267/576 (46%), Gaps = 76/576 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + E
Sbjct: 385 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMTLTYPERVTPYNIAYLQGLVRNGPREY 444
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S++ V
Sbjct: 445 PGARYVIRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMCHRV 504
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + KQ+I+ Q+ +
Sbjct: 505 RLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVAKQIISPQANKP 563
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L Q+Q + ++ P+ +P I K +WSGKQ+
Sbjct: 564 VMGIVQDTLCGIRKFTLRDCFLDWQQVQNILLWVPNWDGTIPTPTILK--PKPLWSGKQI 621
Query: 548 FSMLLP--------PDFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRY 596
S+ +P PD + + P D + I G++I + +G L +
Sbjct: 622 LSLTIPRGINIYRSPDPKSSNPVFDDGMLIENGEIIFGVVEKKTVGASQGGLIHVCFREK 681
Query: 597 RDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+ L+ Q+V+ WL G ++ + D + + K M I ++ + N
Sbjct: 682 GPEATRTLFTGLQQVVNYWLFHNGFSIGIGD------TVADKKTMAYITEQIKMRKQ--N 733
Query: 656 FQQLMVDSHMNFLMSAKD---SESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+ + D+ + L +A ES S L+ + S +Q +N
Sbjct: 734 VAKAVEDASSDRLKAAPGMTIRESFESRVERELNLARDHSGQYAQ-------------KN 780
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCA 766
L +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 781 L-----KEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHRTLPH----- 830
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + A+ + VENS+L GL P E F H++ R+ G +
Sbjct: 831 ----FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 881
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 882 QRRLVKALEDVTVCYDGTVRNSLGD-LIQFVYGEDG 916
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PR+G + +C +CG + C GHFG I+ + HP F+ + K+L IC
Sbjct: 52 VGGLNDPRMGTTDRNFKCQTCG-EGMAECPGHFGHIELARPVFHPGFIVKVKKILECICV 110
Query: 101 KCKTIRKERQKGAGSS 116
C ++ + G S
Sbjct: 111 NCGKLKADTSSITGRS 126
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 215/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
V Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
Length = 872
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/586 (27%), Positives = 273/586 (46%), Gaps = 65/586 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN++L ++G+P +A L E + +N +RLS + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLELDQVGVPKSIARTLTYPEIVTPYNIQRLSELVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R + D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHIMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L L L + Q+ + + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKLTRRDTFLEYDQVMNILFWVPQWNGIVPQPAILKPKPLWTG 387
Query: 545 KQLFSMLLPPD-FEYTFPSKDVYIS---GGKLIS-------AEGSSWLRDYEGNLFQYLI 593
KQ+ S+ +P F F ++S G LI+ A + + G L ++
Sbjct: 388 KQMVSLTIPSGIFLQRFDEGTTWLSPKDNGMLIAKGEIVYGAVDKATVGSTGGGLIHTIM 447
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V +F A Q+V+ WL G ++ + D S + M +I + EA+
Sbjct: 448 REKGPQVCCNFFGAVQKVVNFWLLHNGFSIGIGDTIADSAT------MRDITNAISEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+ ++H N L A + R ++E++ AL++A A K +
Sbjct: 502 AV--AGFIEEAHQNKLKQAA-GMTLRE------TFEQKVMVALNEARDQAGKSSQVSL-- 550
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
++ N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 551 ------TEKNNVKQMVVSGSKGSFINISQMSACVGQQVVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D ++ +I ENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDFGPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSL 876
+ D+ YDGT RN+ G+ I+QF Y +G ++ QP+ ++
Sbjct: 657 ALEDIMVQYDGTTRNSLGD-IIQFLYGEDGLD--GAQVEKQPIDTI 699
>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
Length = 1010
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/567 (28%), Positives = 264/567 (46%), Gaps = 58/567 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPNI L E+G+P +A L ER+ +N +L + E
Sbjct: 270 LMGKRVDFSSRTVITGDPNIMLDEVGVPKSIAMTLTYPERVTPYNIAQLQELVRNGPREY 329
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 330 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDYVLFNRQPSLHKMSMMSHRV 389
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 390 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 448
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKI-SKDSVWSGKQLFS 549
++ + QD+L L +Q + M+ P + I + + +W+GKQ+ S
Sbjct: 449 VMGIVQDTLCGIRKFTLRDTFLDWSAVQNILMWVPDWDGNVPIPAVLAPKPLWTGKQILS 508
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRD 598
M +P P+ P +D + I G++I + +G L + +
Sbjct: 509 MTIPVGINIVRAPEVSSPNPVEDDGMLIENGEIIYGIVDKKTVGAAQGGLVHVVFREKGP 568
Query: 599 KVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF--YGLREAQDTCN 655
+ L++ Q V+ WL G ++ + D + + + MD I + +A+
Sbjct: 569 EACRGLFSGLQMVVNYWLFHNGFSIGIGD------TIADEKTMDHITNRIAMAKAKVYKY 622
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
+Q D + AK + R S+E + +A L+ D +H ++N
Sbjct: 623 IEQGQRDE-----IKAKPGMTIRE------SFESEVNAELNICRDDTGRHAEKSLKN--- 668
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGD 775
DN++ M AGSKG+ + + Q S C+G Q R P D
Sbjct: 669 -----DNNVKQMVVAGSKGSFINISQMSACVGQQSVEGK---RIPFGFKHRTLPHFAKDD 720
Query: 776 NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMR 833
+ A+ + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 721 YSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 775
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 776 DVAVCYDGTVRNSLGD-ILQFIYGEDG 801
>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
Length = 649
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 159/587 (27%), Positives = 270/587 (45%), Gaps = 92/587 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L E + +N E L + E
Sbjct: 111 LMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTPYNIEHLQELVRNGPTEH 170
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L DGD+V+ NR PS+H S+
Sbjct: 171 PGAKYVIRDTG----ERIDLKHHKRAGEVRLQYGWKVERHLNDGDVVIFNRQPSLHKMSM 226
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ++ R E+TE+ + KQ+++
Sbjct: 227 MGHKVRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSVETRAEITEICMVPKQIVSP 285
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L A + LS + + M+ P R P I K +W
Sbjct: 286 QSNKPVMGIVQDTLCAVRKFTKRDCFLSRDLVMNILMWVPEWDGRIPRPCIIK--PIPMW 343
Query: 543 SGKQLFSMLLPP-----DFEYTFPSKD----------VYISGGKLI------SAEGSSWL 581
+GKQ+ S+++P F P + V I G+++ G+S
Sbjct: 344 TGKQILSLIIPKGINCDGFHSGHPENEKSDISPGDTKVLIEDGQVLCGIICKKTVGTS-- 401
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
+G + + + + FL Q V+ WL G ++ + D + + K M+
Sbjct: 402 --QQGLVHVIMQELGSEAAKKFLNGCQTVVNNWLLQHGFSIGIGD------TIADKDTME 453
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
I + A+ Q++++ + + L + + R S+E + L+ A
Sbjct: 454 TITQTIGAAK--SRVQEIILKAQQDNL-KCEPGMTIRE------SFEHHVNRELNTARDS 504
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A + A + ++N++ M +GSKG+ + + Q S C+G Q+ P F+
Sbjct: 505 AGRS--------AERSLREENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGFK 556
Query: 759 F---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
F PH D++ ++ + VENS+L GL P E F H++ R+
Sbjct: 557 FRTLPH---------FTKDDHSPESRGF-----VENSYLRGLTPTEFFFHAMGGREGLID 602
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 603 TAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-VIQFCYGEDG 648
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 163/574 (28%), Positives = 272/574 (47%), Gaps = 66/574 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P +A L ER+ +N E L + + E
Sbjct: 230 LMGKRVDFSARTVITGDPNLMLDEVGVPRSMAMNLTYPERVTPYNIEWLQMLVRNGPREY 289
Query: 376 KGELYVCRKGG----LVRIRRID-ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R D +L+ G I+ R L +GD VL NR PS+H S+++ V
Sbjct: 290 PGARYVVRDSGERIDLRYNKRADTSLQYGWIVERHLKNGDYVLFNRQPSLHKMSMMSHRV 349
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 350 KIMPYST-FRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKP 408
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L + L +Q + ++ P + P I K +W+GKQ+
Sbjct: 409 VMGIVQDTLCGIRKITLRDNFLDWNFVQNILLWVPEWDGQVPVPTILK--PKPLWTGKQI 466
Query: 548 FSMLLPPDFE-YTFPSKD---------------VYISGGKLISA--EGSSWLRDYEGNLF 589
S+ +P + P KD + I G+++ E + G +
Sbjct: 467 LSLCIPSGINVFRAPDKDKRTNRVPANPANDDGICIENGEILYGVVEKKTVGASQAGLIH 526
Query: 590 QYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
++ + D + Q+V+ WL G ++ + D + + K M +I +
Sbjct: 527 ITFREKGPEITRDLFTSLQKVVNFWLLHNGFSIGIGD------TIADKDTMSKITIHIET 580
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
A++ N QL+ + + L A+ + R S+E + L+ A K
Sbjct: 581 AKN--NVLQLIQKAQYDGL-RAEPGMTIRE------SFESHVNRELNMARDKTGKDAQDS 631
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAW 768
++N DN++ M AGSKG+ + + Q S C+G Q + F F H + +
Sbjct: 632 LKN--------DNNVKQMVVAGSKGSFINISQMSGCVGQQSVEGKRIPFGFKHR-TLPHF 682
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
N+ + CA+S VENS+L GL P E F H++ R+ G + R
Sbjct: 683 NK-----DDYCAES---RGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 734
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ M D+ YDGTVRN+ G+ IVQF+Y +G
Sbjct: 735 RLVKAMEDIAVCYDGTVRNSLGD-IVQFAYGEDG 767
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 55/305 (18%)
Query: 969 SMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKD--- 1025
++ SPW+ R L ++D A + PDM + D
Sbjct: 1081 TLSQQSPWVL----------RIQLDRAKVLDKKLDMAYIADRIEQAFYPDMKVIPSDDNA 1130
Query: 1026 ------CSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIK 1079
C I MQ + +AF + T D+ I+ L ++G + I+
Sbjct: 1131 EKLILRCRPIVMQDKDEEAF----------ENTEEDI-FIRQIEHNMLDSVTLRGVKGIR 1179
Query: 1080 KVDILWKDKQKASKSHDDSFGELYLR-----VSMSGQCHITSLWSALMNDCHQIMDMIDW 1134
+V ++ DK D+ GEL R V + ++ S+ S +D ID+
Sbjct: 1180 RVFMVEHDKPMI-----DAAGELQPRSAKEWVLETDGVNLKSVLS---------VDGIDF 1225
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
TR++ + GI+A L L + I G + HL ++ + ++ G + +
Sbjct: 1226 TRTYSNKCPEVFEVLGIEAARAAILRELRNVIEFDGSYVNYRHLALLTDLMTNRGTLMAI 1285
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
G+ + + + ++ F ++AA G D+ G + + +G++ +GTG
Sbjct: 1286 TRHGI-----NRADTGALMRCSFEETVEILMEAAAVGEKDDCYGVAENVLFGQMAPMGTG 1340
Query: 1255 GHFDI 1259
FD+
Sbjct: 1341 S-FDV 1344
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 214/946 (22%), Positives = 390/946 (41%), Gaps = 176/946 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRN 322
+ + +K+ + H L ++ +K ++ K + G ++ ++GKR
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQ-RLKGKEG--RVRGNLMGKRV 359
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYV 381
D R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+
Sbjct: 360 DFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYI 419
Query: 382 CRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
R G RID L+ G + R + DGDIV+ NR P++H S++ V+
Sbjct: 420 IRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVR 475
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
+LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R +
Sbjct: 476 ILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPV 534
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLF 548
+ + QD+LTA + V L ++ L MF + P I K +W+GKQ+F
Sbjct: 535 MGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIF 592
Query: 549 SMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNL 588
S+++P PD E + P K + K++ G L G+L
Sbjct: 593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSL 652
Query: 589 FQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ Y+ Q V+ WL + G T+ + D S + +I +
Sbjct: 653 VHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTI 706
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFK 704
++A+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 707 KKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY- 763
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR--- 758
N+ +M +G+KG+ + + Q +G Q+ P F+
Sbjct: 764 -----------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRT 806
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 807 LPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDT 850
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 851 AVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/573 (27%), Positives = 268/573 (46%), Gaps = 70/573 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ L E+G+P +A L ER+ +N L + +
Sbjct: 353 LMGKRVDFSARTVITGDPNLMLDEVGVPRSIAMTLTYPERVTPYNIAYLQELVRNGPTAY 412
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 413 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRV 472
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL ++ + +Q+I+ Q+ +
Sbjct: 473 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELAQIAWVPRQIISPQANKP 531
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFS 549
++++ QD+L L Q+Q + ++ P + I I K +W+GKQ+ S
Sbjct: 532 VMAIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGTVPIPTIVKPKPMWTGKQILS 591
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRD 598
M +P PD + + P D + I G +I + +G L + +
Sbjct: 592 MCIPRGINIFRSPDPKSSSPVFDDGMMIENGDIIFGIVDKKTVGSAQGGLIHVVFREKGP 651
Query: 599 KVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCS--RKILMDEIFYGLREAQDTCN 655
+ L++ Q+V+ WL G ++ + D + + KI+ D
Sbjct: 652 EATRGLFSGLQQVVNYWLFHNGFSIGIGDTIADDKTTAVISKIIADR----------KAT 701
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
++ D++ + L + + R S+E + L+ A D+ ++ A
Sbjct: 702 VSKITQDAYHDRL-KPQPGMTIRE------SFESKVERELNLARDDSGQY--------AQ 746
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCAAWN 769
K+ +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 747 KHLKEDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPH-------- 798
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + A+ + VENS+L GL P E F H++ R+ G + RR
Sbjct: 799 -FTKDDFSPEARGF-----VENSYLRGLTPHEFFFHAMAGREGLIDTAVKTAETGYIQRR 852
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
L+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 853 LVKALEDVAVCYDGTVRNSLGD-LIQFVYGEDG 884
Score = 48.5 bits (114), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G + +C +CG + C GHFG I+ + HP F+ + K+L IC C +
Sbjct: 57 DPRMGTIDRNFKCQTCG-EGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKL 115
Query: 106 RKE 108
+ +
Sbjct: 116 KAD 118
>gi|397135890|gb|AFO11440.1| RNA polymerase I, partial [Priceomyces castillae]
Length = 872
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/574 (27%), Positives = 272/574 (47%), Gaps = 63/574 (10%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTELVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID AL+ G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + ++ + QD+L + + + + Q+ + + P+ + P I
Sbjct: 324 IVSAQSNKPVMGIVQDTLCGVRKMTLRDIFIDYEQVMNMLYWIPNWDGIVPPPSIIKPKP 383
Query: 541 VWSGKQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQL SM +P D +KD + I G + + G L
Sbjct: 384 LWTGKQLLSMAIPKGIHLQRFDDGVNLLSAKDNGMLIIDGQIMFGVVDKKTVGATGGGLI 443
Query: 590 QYLIKRYRDKVLDFLY-AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ K L+ + Q+V+ WL G ++ + D +A S M ++ ++
Sbjct: 444 HTVMREKGPKACAQLFNSIQKVVNYWLLHNGFSIGIGDT-IADAST-----MTDVTTTIQ 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ Q++++D+ N L D E +L+ S+E S L+QA A +
Sbjct: 498 EAKKKV--QEIILDAQQNRL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEM 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
++++L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 549 NLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
+ + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFTKDNYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R++ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 653 RIIKALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 685
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 159/589 (26%), Positives = 265/589 (44%), Gaps = 79/589 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 264 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 323
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 324 PHPPPGKTGAKYIIREDG----QRLDLRYSKKSSDHHLELGYKVERHLNDGDFVLFNRQP 379
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 380 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 438
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 439 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILK 498
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P S V I G+L++
Sbjct: 499 --PRPLWTGKQVFNLIIPKQINLIXTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKK 556
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D +A + KI
Sbjct: 557 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDT-IADAATMEKI 615
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALS 696
N L S + L+ A +S + G + S+E + + L+
Sbjct: 616 ----------------NETILKAKSEVKDLIKAAQEKSLEAEPGRTMMESFENRVNQVLN 659
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
+A DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 660 KARDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK-- 709
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P+ + D + + VENS+L GL P E F H++ R+
Sbjct: 710 -RIPYGFNGRTLPHFTKDDYGPEXRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDT 763
Query: 817 NADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G +
Sbjct: 764 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMDS 811
>gi|59939212|gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
Length = 1902
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 151/529 (28%), Positives = 247/529 (46%), Gaps = 38/529 (7%)
Query: 787 AVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVR 844
V F GL+P E +HS+ +R+ + L PGTL + LM +RD+ YDGTVR
Sbjct: 543 GFVSRCFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAVLRDVVICYDGTVR 602
Query: 845 NAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLN- 903
N N ++QF Y + G + PVG L+A A+S AY A+ L++SP N
Sbjct: 603 NISSNSVIQFEYGVGGMQSQNLFPAGDPVGVLAATAMSNPAYKAV------LDSSPNSNS 656
Query: 904 ----LKNVLECGSKKSN--ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVS 957
+K +L C + N D+ + L+L++ R++ E + VKNHL+ + L D
Sbjct: 657 SWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKKVSLRDAAI 716
Query: 958 TSMIIY-----SPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTEL 1012
I Y P++ + + + H H+ ++K +G+ H I+ Q R +
Sbjct: 717 ELAIEYKRPKLEPESCEID--AGLVGHIHLNSGLLKASGIGMHDILQKCEEQVNLLRKKK 774
Query: 1013 KIS--VPDMLISNKDCSSIN-MQKECNDAFCVTVMIVENFKRTSIDLETIQM----WVMP 1065
K +L+S DC N + D C+ + T DLE + + P
Sbjct: 775 KYGYHFKRILLSVSDCCFFNHSDSKWTDMPCLKFFWQD---MTDTDLERTKHIMADMICP 831
Query: 1066 FLLKTVVKGFREIKKVDILWKDKQKASKSHD---DSFGELYLRVSMSGQC-HITS-LWSA 1120
LL T++KG I V+I+W + + + GEL + V++ + +T W
Sbjct: 832 VLLDTIIKGDPRISTVNIIWINPGTTTWVQSPCSSTKGELAVEVALEKEAVRLTGDAWRI 891
Query: 1121 LMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLI 1180
+++ C + +ID RS P I+ +GI + L ++++ K +L EHLL+
Sbjct: 892 VLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLLL 951
Query: 1181 VANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSV 1240
+A++++ G VG N G+ + +V PF +A P F +A++ VD L V
Sbjct: 952 LASSMTCAGNLVGFNTSGIKALCRALNVQVPFTEATLYTPRKCFERASEKCHVDTLASIV 1011
Query: 1241 DALGWGKVPSVGTGGHFDIIY-SGEGRTLSKPVDVYNLLSTPVSSKQNE 1288
+ WGK S+GTG FD+++ + E KP DVYN L S+ + E
Sbjct: 1012 GSCSWGKRVSIGTGAKFDLLWETKEIEMADKPTDVYNFLHLVSSANEEE 1060
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 169/353 (47%), Gaps = 46/353 (13%)
Query: 306 NSSGLRWI---KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNW 362
N+S W+ + + + K + R V+TGD + E+G+PC++A+++ ER+N N
Sbjct: 92 NNSSKAWVEKMRTLFISKGSGFSSRSVITGDAYRAVNEVGVPCEIAQKMTFEERVNVHNI 151
Query: 363 ERL------SVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINR 416
+ L ++C++FR + Y R+G + L LG +++R + DGDIV INR
Sbjct: 152 QYLQGLVDKNLCLTFR--DGLSTYSLREGS----KGHTFLRLGQMVHRRIMDGDIVFINR 205
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
PP+ H HSL AL V + VV INPL C P DFDGDC+H + PQ++ AR E+ EL
Sbjct: 206 PPTTHKHSLQALRVYIHD-DHVVKINPLMCGPLAADFDGDCVHLFYPQSLSARAEVLELF 264
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKI 536
+++KQL++ SG L L DSL + + E L QL M+ SP ++K
Sbjct: 265 SVEKQLLSSHSGNLNLQLSTDSLLSLKTMFE-VYFLDRASANQLAMYASSLLPSPALWKA 323
Query: 537 -----------SKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYE 585
S W+ +Q+ LP FE G +L+ + D+
Sbjct: 324 CSSNAKKKKAHSSGPRWTAQQVLQTALPSHFE---------CHGDRLLIHDSEILKLDFN 374
Query: 586 GNLFQYLI---------KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
++ +I + LDF + Q +L E L G +VSL D +
Sbjct: 375 RDIVASVISDVLTSLFFNKSPKDALDFFDSLQPLLMENLFSEGFSVSLHDFFF 427
Score = 57.4 bits (137), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 1319 DFETISRGVLRKSWTYNDVLRLSNALKKILHKYSI--GQRLSEKDKTTVI-RALYFHPRR 1375
+F T + VL ++V L ++++I+H+ G+ L D+T +I L +HP +
Sbjct: 1749 EFPTEEKDVL------SEVESLMQSIRRIMHQSGCVDGEPLLPDDQTYLIDNILNYHPDK 1802
Query: 1376 NEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRA 1435
K+G I V H Q SRCF +V DG DFSY KC+ ++ P AE + +
Sbjct: 1803 AAKIGAGVDFITVKKHSNFQESRCFYVVSTDGKDTDFSYIKCIETFVKGKYPSVAESFTS 1862
Query: 1436 KWKR 1439
K+ R
Sbjct: 1863 KYFR 1866
>gi|133332|sp|P17546.1|RPB1A_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-A;
Short=RNA polymerase II subunit B1-A; AltName:
Full=DNA-directed RNA polymerase II largest subunit A
gi|10505|emb|CAA31846.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 160/574 (27%), Positives = 270/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTE-FARRTVYP 406
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 407 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL S+ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 467 RVLNYSTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 526 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 583
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 584 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 643
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 644 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 684
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 685 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 741
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 742 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 789
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 790 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 842
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 843 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 875
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/580 (26%), Positives = 267/580 (46%), Gaps = 67/580 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 264 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 323
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 324 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 383
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 384 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 442
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ QS R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 443 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILK--PR 500
Query: 540 SVWSGKQLFSMLLPPDFE-------YTFPSKDVYISGGKLISAEGSSWLRDY-------- 584
+W+GKQ+F++++P ++ K G ++ E L
Sbjct: 501 PIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGT 560
Query: 585 -EGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M+
Sbjct: 561 GSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAST------MET 614
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +A++ ++L+ +H L ++E R++ S+E + + L++A DA
Sbjct: 615 INDTISKAKNAV--KELIKKAHEKQL----EAEPGRTMME---SFENRVNQVLNKARDDA 665
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A S+ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 666 --------GSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFG 714
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 FIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 769
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 TGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 808
>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 880
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 224/926 (24%), Positives = 374/926 (40%), Gaps = 163/926 (17%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAK 64
I+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 5 IIKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCG-N 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSR------- 117
C GHFG I+ ++H F+ + +L + C C ++ + + SR
Sbjct: 64 TLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSRIYHAIKD 123
Query: 118 ---KEQPRVCKYCVRN-------PAQWYPRMRFKLSSKD---LSGKTAIIVEIDEKLSKK 164
R+ +Y +N P + + KL K +I + ++
Sbjct: 124 RWPSAARRLVEYIKKNAMKNMECPHCGEKQFKIKLEKPYNFYEERKEGVIRLTPSDIRER 183
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFL 223
+++PD + + +D + +P +L+ V + + PSI E I ++D
Sbjct: 184 LERIPDSDYELLGYDPKYS----RPEWMILTVLPVPPIT--IRPSITIESGIRAEDDLTH 237
Query: 224 KCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGRDIEL 270
K + N R+ E A + +FDN + GR L
Sbjct: 238 KLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGR--PL 295
Query: 271 SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVV 330
L Q R E R + N+ GKR D R V+
Sbjct: 296 RTLAQ--------------RLKGKEGRFRGNLS---------------GKRVDFSARTVI 326
Query: 331 TGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVR 389
+ DPNI + E+G+P +A+ L + ER+ N ER+ I+ G YV R G
Sbjct: 327 SPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIRPDG--- 383
Query: 390 IRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS 437
RRID +L G I+ R L DGDIVL NR PS+H S++ VKVLP
Sbjct: 384 -RRIDLRYVKDRKELASSLTPGYIVERHLIDGDIVLFNRQPSLHRISMMGHKVKVLP-GR 441
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
+N L C P++ DFDGD ++ ++PQ+ A E E++ + + +I + G ++ QD
Sbjct: 442 TFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRYGGPIMGGAQD 501
Query: 498 SLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFE 557
++ A+LL + LL+ ++ + + ++ ++GKQ+ S+ LP DF
Sbjct: 502 YISGAYLLTVKTTLLTREEVTTILGVTDFMGEIGEPAILAPREYYTGKQIVSLFLPKDFN 561
Query: 558 YTFPSK---------------DVYISGGKLISAEG----SSWLRDYEGNLFQYLIKRYRD 598
+ + D YI I EG + ++ +L++ Y
Sbjct: 562 FHGQANISKGFRACKNEVCPHDSYIVIKNGILLEGVLDKKAIGNQQPESILHWLVREYGT 621
Query: 599 K----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ V+D ++ ++ ++ +RG T++L D+ + + E+ Y
Sbjct: 622 EYGRWVMDNVF---KLFIRFIELRGFTMTLDDVTIPPQAFKEIDEQIEVAYK-------- 670
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++L+ + L + SL+ L ++D + V DI A
Sbjct: 671 KVEELIKQYNEGTLELIPGRTAEESLEDHILE------------TLDQLRKVAGDI---A 715
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
KY N++ M G++G+ L + Q + LG Q R + G
Sbjct: 716 TKYLDPFNNVYIMAVTGARGSELNITQMTAMLGQQSVRGE---RIKRGYMTRTLPHFKPG 772
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFF 831
D + A+ + V NSF GL P+E F H+ R+ D A G + RRL+
Sbjct: 773 DISPDARGF-----VHNSFTRGLTPIEMFFHAAGGRE-GLVDTAVKTSQSGYMQRRLINA 826
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYN 857
+ DL YDGTVR+ YG ++++ +Y
Sbjct: 827 LSDLRVEYDGTVRSLYG-EVIELAYG 851
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 224/926 (24%), Positives = 374/926 (40%), Gaps = 163/926 (17%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAK 64
I+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 9 IIKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCG-N 67
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSR------- 117
C GHFG I+ ++H F+ + +L + C C ++ + + SR
Sbjct: 68 TLNGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKIKEEDLQRYSRIYHAIKD 127
Query: 118 ---KEQPRVCKYCVRN-------PAQWYPRMRFKLSSKD---LSGKTAIIVEIDEKLSKK 164
R+ +Y +N P + + KL K +I + ++
Sbjct: 128 RWPSAARRLVEYIKKNAMKNMECPHCGEKQFKIKLEKPYNFYEERKEGVIRLTPSDIRER 187
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFL 223
+++PD + + +D + +P +L+ V + + PSI E I ++D
Sbjct: 188 LERIPDSDYELLGYDPKYS----RPEWMILTVLPVPPIT--IRPSITIESGIRAEDDLTH 241
Query: 224 KCFPVTPNNHRVTEVPHA-------------FSHEKKLFFDNWTRHLKKMVDYRGRDIEL 270
K + N R+ E A + +FDN + GR L
Sbjct: 242 KLVDIIRINERLKESIDAGAPQLIIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGR--PL 299
Query: 271 SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVV 330
L Q R E R + N+ GKR D R V+
Sbjct: 300 RTLAQ--------------RLKGKEGRFRGNLS---------------GKRVDFSARTVI 330
Query: 331 TGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVR 389
+ DPNI + E+G+P +A+ L + ER+ N ER+ I+ G YV R G
Sbjct: 331 SPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIRPDG--- 387
Query: 390 IRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS 437
RRID +L G I+ R L DGDIVL NR PS+H S++ VKVLP
Sbjct: 388 -RRIDLRYVKDRKELASSLTPGYIVERHLIDGDIVLFNRQPSLHRISMMGHKVKVLP-GR 445
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
+N L C P++ DFDGD ++ ++PQ+ A E E++ + + +I + G ++ QD
Sbjct: 446 TFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHRNIITPRYGGPIMGGAQD 505
Query: 498 SLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFE 557
++ A+LL + LL+ ++ + + ++ ++GKQ+ S+ LP DF
Sbjct: 506 YISGAYLLTVKTTLLTREEVTTILGVTDFMGEIGEPAILAPREYYTGKQIVSLFLPKDFN 565
Query: 558 YTFPSK---------------DVYISGGKLISAEG----SSWLRDYEGNLFQYLIKRYRD 598
+ + D YI I EG + ++ +L++ Y
Sbjct: 566 FHGQANISKGFRACKNEVCPHDSYIVIKNGILLEGVLDKKAIGNQQPESILHWLVREYGT 625
Query: 599 K----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ V+D ++ ++ ++ +RG T++L D+ + + E+ Y
Sbjct: 626 EYGRWVMDNVF---KLFIRFIELRGFTMTLDDVTIPPQAFKEIDEQIEVAYK-------- 674
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++L+ + L + SL+ L ++D + V DI A
Sbjct: 675 KVEELIKQYNEGTLELIPGRTAEESLEDHILE------------TLDQLRKVAGDI---A 719
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
KY N++ M G++G+ L + Q + LG Q R + G
Sbjct: 720 TKYLDPFNNVYIMAVTGARGSELNITQMTAMLGQQSVRGE---RIKRGYMTRTLPHFKPG 776
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFF 831
D + A+ + V NSF GL P+E F H+ R+ D A G + RRL+
Sbjct: 777 DISPDARGF-----VHNSFTRGLTPIEMFFHAAGGRE-GLVDTAVKTSQSGYMQRRLINA 830
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYN 857
+ DL YDGTVR+ YG ++++ +Y
Sbjct: 831 LSDLRVEYDGTVRSLYG-EVIELAYG 855
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 215/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGILSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 157/580 (27%), Positives = 267/580 (46%), Gaps = 67/580 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 345 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 404
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 405 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 464
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 465 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 523
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ QS R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 524 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILK--PR 581
Query: 540 SVWSGKQLFSMLLPPDFE-------YTFPSKDVYISGGKLISAEGSSWLRDY-------- 584
+W+GKQ+F++++P ++ K G ++ E L
Sbjct: 582 PIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGT 641
Query: 585 -EGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M
Sbjct: 642 GTGSLIHIIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAST------MQT 695
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +A+D ++L+ +H L ++E R++ S+E + + L++A DA
Sbjct: 696 INDTICKAKD--EVKELIKKAHEKQL----EAEPGRTMME---SFENRVNQVLNKARDDA 746
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 747 --------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFG 795
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 796 FIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 850
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 851 TGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 889
Score = 44.7 bits (104), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1337 CHED---VDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDT 1393
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D+L+G + +
Sbjct: 1394 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIM 1448
Query: 1245 WGKVPSVGTGG 1255
G++ +GTGG
Sbjct: 1449 LGQLAPIGTGG 1459
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 158/588 (26%), Positives = 274/588 (46%), Gaps = 85/588 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R + DGD++L NR PS+
Sbjct: 413 PDIHPGARYVIRSTG----ERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL++L +
Sbjct: 469 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKD 539
Q+++ Q L+ + QD+L + + V LS Q+ + ++ P + P +
Sbjct: 528 QIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPR 587
Query: 540 SVWSGKQLFSMLLPPDF-------------EYTFPSKD--VYISGGKLISAEGSS-WLRD 583
W+GKQL SM+LPP E P D V + GG+L+ S +
Sbjct: 588 PRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGA 647
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G + + Y + ++F AQ V+ WL G ++ + D + +KI
Sbjct: 648 TGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDT-IPDLPTIQKI---- 702
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASV 700
++ ++ VD + SA D+ + L G ++ ++E + S AL+ A
Sbjct: 703 --------ENAVRVRKEEVD---DITASATDN-TLEPLPGMNVRETFESKVSRALNNARD 750
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSF 757
+A ++L N+ + M ++GSKG+++ + Q + +G Q P F
Sbjct: 751 EAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVGQQSVEGKRIPFGF 802
Query: 758 RF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 803 KYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLI 848
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 849 DTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGEDG 895
Score = 47.8 bits (112), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|123979348|gb|ABM81499.1| RNA polymerase II largest subunit [Erioderma verruculosum]
Length = 995
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 156/572 (27%), Positives = 265/572 (46%), Gaps = 68/572 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 255 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 314
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R+ G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 315 PGAKYVIRESG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSLHKESM 370
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDG ++ ++PQ+ R E+ +L + +++
Sbjct: 371 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGGEMNLHVPQSEETRAEINQLCMVPLNIVSP 429
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V LS Q + ++ P L P + W+G
Sbjct: 430 QRNGPLMGIVQDTLCGIYKICRRDVFLSKEQAMNILLWVPDWDGLLPQPAILKPRPKWTG 489
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++PP P + + +SGGKL+ S G+ ++I
Sbjct: 490 KQIISLVIPPGLNLNRPVSEGFSPVNDDGLLVSGGKLMYGLLSKKSVGASGSGIVHIIFN 549
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D ++ +++ +D
Sbjct: 550 EKGPEAAMKFFNGAQTVVNFWLLHNGFSIGIGDTIPDRNT-------------IQQIEDA 596
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V SA ++E L G ++ ++E + S AL++A DA ++
Sbjct: 597 VNKQKEDV---AEITRSATENE-LEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 652
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRL 771
+L N+ M ++GSKG+ + + Q + +G Q R P
Sbjct: 653 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFKYRTLPHF 701
Query: 772 RAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRL 828
D + ++ + VENS+L GL P E F H++ R+ F D A G + RRL
Sbjct: 702 TKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGRE-GFIDTAVKTAETGYIQRRL 755
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 756 VKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 786
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/584 (26%), Positives = 269/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPSKD-VYISGGKLISAE-GSS 579
+W+GKQ+F++++P + P V I G+++S
Sbjct: 503 --PRPLWTGKQVFNLIIPKQINLIRQSAWHAESETGFITPGDTIVRIEKGEVLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + + + ++
Sbjct: 561 TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTI--ADAATMEV 618
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ + I E + Q D + ++E R++ S+E + + L++A
Sbjct: 619 INETISKAKHEVKQLIKAAQ---DKQL-------EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPYGFDGRTLPHFTKDDKGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
Length = 872
Score = 191 bits (485), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 157/571 (27%), Positives = 265/571 (46%), Gaps = 63/571 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q+++
Sbjct: 269 MCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P + P I +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVIPPPAVIKPKPLWTG 387
Query: 545 KQLFSMLLPPDFEY--------TFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHIQRLDGGTSMLSPKDTGILIVDGEIMFGVVDKKTVGATSGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L++A Q+V+ WL G ++ + D S + M + + EA+
Sbjct: 448 REKGPQVCAKLFSALQKVVNYWLLHNGFSIGIGDTIADSDT------MKTVTTTIEEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILDAQKNRL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDGV 686
>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
Length = 872
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 272/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P +S +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLYWIPNWDGVIPPPAIVSPKPLWTG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D + KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDDGKNLLSPKDNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D S + M ++ +++A+D
Sbjct: 448 REKGSQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADSST------MRDVTTTIQDAKD 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILDAQSNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDG+ RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGSTRNSLGD-IIQFVYGEDG 685
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 162/589 (27%), Positives = 268/589 (45%), Gaps = 85/589 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISF- 371
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 265 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 324
Query: 372 ---RLLEKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ + G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 325 PHPPVGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 380
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 381 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 439
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 440 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILK 499
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLIS------ 574
+W+GKQ+F++++P T V I G+L++
Sbjct: 500 --PRPLWTGKQVFNLIIPKQINLLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKK 557
Query: 575 AEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
A G+S G+L + + D FL Q ++ WL G ++ + D +A S
Sbjct: 558 ALGTS-----TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDT-IADAS 611
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
KI D I E +D Q + + E R++ S+E + +
Sbjct: 612 TMEKI-NDTISKAKNEVKDLIRMAQ----------EKSLEPEPGRTMME---SFENRVNQ 657
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
L++A DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 658 VLNKARDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 709
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 710 K---RIPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGL 761
Query: 814 FSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 762 IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 809
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 215/943 (22%), Positives = 387/943 (41%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILG---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 VPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 -LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++ D F Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADAKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 215/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
V Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 215/946 (22%), Positives = 391/946 (41%), Gaps = 176/946 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILG---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRN 322
+ + +K+ + H L ++ +K ++ K + G ++ ++GKR
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQ-RLKGKEG--RVRGNLMGKRV 359
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYV 381
D R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+
Sbjct: 360 DFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYI 419
Query: 382 CRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
R G RID L+ G + R + DGDIV+ NR P++H S++ V+
Sbjct: 420 IRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVR 475
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
+LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R +
Sbjct: 476 ILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPV 534
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLF 548
+ + QD+LTA + V L ++ L MF + P I K +W+GKQ+F
Sbjct: 535 MGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIF 592
Query: 549 SMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNL 588
S+++P PD E + P K + K++ G L G+L
Sbjct: 593 SLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSL 652
Query: 589 FQY-LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
++ D F Q V+ WL + G T+ + D S + +I +
Sbjct: 653 VHISYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADAKTYQDIQNTI 706
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFK 704
++A+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 707 KKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY- 763
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR--- 758
N+ +M +G+KG+ + + Q +G Q+ P F+
Sbjct: 764 -----------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRT 806
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 807 LPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDT 850
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 851 AVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/580 (26%), Positives = 267/580 (46%), Gaps = 67/580 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 345 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 404
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 405 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 464
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 465 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 523
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ QS R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 524 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILK--PR 581
Query: 540 SVWSGKQLFSMLLPPDFE-------YTFPSKDVYISGGKLISAEGSSWLRDY-------- 584
+W+GKQ+F++++P ++ K G ++ E L
Sbjct: 582 PIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGT 641
Query: 585 -EGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M+
Sbjct: 642 GSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAST------MET 695
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +A++ ++L+ +H L ++E R++ S+E + + L++A DA
Sbjct: 696 INDTISKAKNAV--KELIKKAHEKQL----EAEPGRTMME---SFENRVNQVLNKARDDA 746
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A S+ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 747 --------GSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFG 795
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 796 FIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 850
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 851 TGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 889
Score = 44.7 bits (104), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1337 CHED---VDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDT 1393
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D+L+G + +
Sbjct: 1394 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIM 1448
Query: 1245 WGKVPSVGTGG 1255
G++ +GTGG
Sbjct: 1449 LGQLAPIGTGG 1459
>gi|397135868|gb|AFO11429.1| RNA polymerase I, partial [Clavispora lusitaniae]
Length = 872
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 162/585 (27%), Positives = 277/585 (47%), Gaps = 66/585 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPLSIARTLTYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P I +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWIPNWDGVIPPPAIIKPKPLWSG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLI 593
KQ+ SM +P D KD + I G++I + G L ++
Sbjct: 388 KQILSMAIPKGIHLQRFDDGNDMLSPKDKGILIVDGEIIFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D + + K M ++ ++EA+
Sbjct: 448 REKGSQVCAQLFSSIQKVVNYWLLHNGFSIGIGD------TIADKDTMRDVTTTIQEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIIMDAQQNRL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 553 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSY---NIEGTSTPTGEIGDQP 872
+ D+ YDGT RN+ G+ I+QF Y I+GT+ + P
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDGIDGTAVEKQSVDTIP 700
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 215/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
V Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|288931146|ref|YP_003435206.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
gi|288893394|gb|ADC64931.1| DNA-directed RNA polymerase subunit A' [Ferroglobus placidus DSM
10642]
Length = 870
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 163/579 (28%), Positives = 269/579 (46%), Gaps = 80/579 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR + R V++ DPN+ + E+G+P +AE L + + N E + R
Sbjct: 310 GKRVNFSARTVISPDPNLSINEVGVPKVIAEELTVPIYVTPNNIEEAREYV-LRTEHPKA 368
Query: 379 LYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R G RIR IDA LE G I+ R L DGDIVL NR PS+H S++A V
Sbjct: 369 NYVIRPDGR-RIRVIDANREELAEKLEPGWIVERQLKDGDIVLFNRQPSLHRMSIMAHYV 427
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VLP + +NP C P++ DFDGD ++ ++PQ+I A+ E L+A+ + +++ + G
Sbjct: 428 RVLPYKTF-RLNPAVCPPYNADFDGDEMNLHVPQSIEAQAEAKILMAVQEHILSPRFGGP 486
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSP-DIFKISK---DSVWSGKQ 546
++ D ++ +LL L S ++ +L + P ++ KI + DS W+GKQ
Sbjct: 487 IIGGIHDHISGLYLLTRGEKLFSKEEVMEL--------IRPINVEKIPEPKYDSKWTGKQ 538
Query: 547 LFSMLLPPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWLRDYEGNL 588
+FSM+L PD F ++ D Y I G+LI + ++G +
Sbjct: 539 IFSMIL-PDITLEFKAEICQGCEKCEGENCPHDAYVVIRNGELIKGTIDEKAVGAFKGII 597
Query: 589 FQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
++++Y ++ F+ ++ + G TV + D +
Sbjct: 598 IDEIVRKYGTEEAKKFIDNMTQLAIRAIMFFGFTVGIDDEDIP----------------- 640
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKH 705
+EA++ + + L+ A + + + G L + E + L +A A K
Sbjct: 641 KEAREQIEEIMNEAEKKVEELIEAYKAGNLEPMPGRSLEETLEMKIMQVLGKARDQAGK- 699
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
+A +Y DN+ + M +G++G++L L Q + C+G Q S+ R + S
Sbjct: 700 -------IASQYLGMDNAAVIMAVSGARGSMLNLTQMAACIG-QQSVRGERIRRGYAYSN 751
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPG 822
+ GD A+ + V +S+ +GL+P+E F H+V R+ D A G
Sbjct: 752 RTLPHFKPGDLGARARGF-----VRSSYKSGLSPVEFFFHAVGGRE-GLVDTAVRTSQSG 805
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
L RRL+ ++DL YDGTVR IVQF Y +G
Sbjct: 806 YLQRRLINALQDLKVEYDGTVREQTSGIIVQFKYGEDGV 844
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 42 SEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
S + +PRLG+ +P C +CG K + C GHFG I+ ++H + IA+LLN C +
Sbjct: 42 SGLMDPRLGVVDPGLRCRTCGGKAGE-CPGHFGHIELAAPVIHVGYAKLIARLLNGTCRE 100
Query: 102 CKTI 105
C I
Sbjct: 101 CGRI 104
>gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM
3638]
gi|18893705|gb|AAL81687.1| DNA-directed RNA polymerase subunit a' [Pyrococcus furiosus DSM
3638]
Length = 907
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 166/597 (27%), Positives = 273/597 (45%), Gaps = 93/597 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR + R V++ DP I + E+G+P +VA L + E++ +N ERL + ++ G
Sbjct: 318 GKRVNFSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPG 377
Query: 378 ELYVCRKGGLVRIRRI---------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
YV G R RRI + L++G + R L DGDIVL NR PS+H S++A
Sbjct: 378 ANYVIDPEG--RRRRIMDSNKETLANQLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAH 435
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 436 RVRVMPYRTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYG 494
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGK 545
++ QD ++ +LL + + +++Q+ MF PD + + + +WSGK
Sbjct: 495 GPIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMFAGVDITELPEPDKYDENGNPLWSGK 554
Query: 546 QLFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKL 572
+FS+LLP D E P + VYI GKL
Sbjct: 555 TIFSLLLPEDLTVWYRNKLCDEPERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKL 614
Query: 573 ISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
+S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T + D L
Sbjct: 615 LSGAIDKKAYGRE-DGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDL 673
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SY 687
+ R + EI +REA++ +N L+ A L G+ L +
Sbjct: 674 PEEARDR---IREI---IREAEE-----------RVNKLIEAYKRGELEPLPGKSLEDTL 716
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E A L++A +A +A KY DN + M K G++G +L + Q + LG
Sbjct: 717 ESLIMAVLAEARDNA--------GAVAEKYLGMDNHTVIMAKTGARGKILNITQMAALLG 768
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q +R + + GD AK + V NS+ +GL P E F H++
Sbjct: 769 QQSIRGKRLYRG---FRGRVLSHFKPGDLGARAKGF-----VVNSYKSGLTPQEYFFHAM 820
Query: 808 TSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 821 GGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRSPEG-IIVQFKYGEDGV 875
Score = 51.6 bits (122), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S +E+ V + R+G+ +P C +CG +
Sbjct: 4 VIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGGR 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 64 AGE-CPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIK 104
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 215/943 (22%), Positives = 387/943 (41%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILG---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 VPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 -LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++ D F Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDTTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADAKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|397652056|ref|YP_006492637.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
gi|393189647|gb|AFN04345.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
Length = 910
Score = 191 bits (484), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 166/597 (27%), Positives = 273/597 (45%), Gaps = 93/597 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR + R V++ DP I + E+G+P +VA L + E++ +N ERL + ++ G
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPG 380
Query: 378 ELYVCRKGGLVRIRRI---------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
YV G R RRI + L++G + R L DGDIVL NR PS+H S++A
Sbjct: 381 ANYVIDPEG--RRRRIMDSNKETLANQLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAH 438
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 439 RVRVMPYRTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYG 497
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGK 545
++ QD ++ +LL + + +++Q+ MF PD + + + +WSGK
Sbjct: 498 GPIIGGIQDHISGGYLLTREGAYFTRDEVEQMLMFAGVDITELPEPDKYDENGNPLWSGK 557
Query: 546 QLFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKL 572
+FS+LLP D E P + VYI GKL
Sbjct: 558 TIFSLLLPEDLTVWYRNKLCDEPERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKL 617
Query: 573 ISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
+S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T + D L
Sbjct: 618 LSGAIDKKAYGRE-DGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDL 676
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SY 687
+ R + EI +REA++ +N L+ A L G+ L +
Sbjct: 677 PEEARDR---IREI---IREAEE-----------RVNKLIEAYKRGELEPLPGKSLEDTL 719
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E A L++A +A +A KY DN + M K G++G +L + Q + LG
Sbjct: 720 ESLIMAVLAEARDNA--------GAVAEKYLGMDNHTVIMAKTGARGKILNITQMAALLG 771
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q +R + + GD AK + V NS+ +GL P E F H++
Sbjct: 772 QQSIRGKRLYRG---FRGRVLSHFKPGDLGARAKGF-----VVNSYKSGLTPQEYFFHAM 823
Query: 808 TSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 824 GGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRSPEG-IIVQFKYGEDGV 878
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S +E+ V + R+G+ +P C +CG +
Sbjct: 7 VIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGGR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIK 107
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 191 bits (484), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 191 bits (484), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 149/580 (25%), Positives = 264/580 (45%), Gaps = 71/580 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +++ I
Sbjct: 342 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNG 401
Query: 373 LLEK-GELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R+ G L ++++ LE G + R + DGD+V+ NR PS+H S+
Sbjct: 402 PNEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSM 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +KV+P S+ +N SP++ DFDGD ++ ++PQ + R E+ E++ + +Q+++
Sbjct: 462 MGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSP 520
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+L + L + + + + M+ P + P I K + +W
Sbjct: 521 QSNRPVMGIVQDTLLGSRLFTKRDTFIERDLVMNILMWLPSWDGKVPPPAILKPKQ--LW 578
Query: 543 SGKQLFSMLLPP----DFEYTFPSKD----------VYISGGKLISA-EGSSWLRDYEGN 587
+GKQLFS+++P F T K+ V I G+L++ L G+
Sbjct: 579 TGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGS 638
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ ++ + D F+ Q V+ WL RG T+ + D + + + L
Sbjct: 639 IIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADAQTMEKVTLT------ 692
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ SAK+ ++ ++ +E Q ++ + V
Sbjct: 693 ---------------------ISSAKNQVKELIIKAQNKQFECQPGKSVMETFEQKVNQV 731
Query: 707 FWDIQNLAYKYG----SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
++ A S+ N+L AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 732 LNKARDTAGSSAQNSLSEANNLKAMVTAGSKGSFINISQMMACVGQQNVEGK---RVPFG 788
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 789 FQSRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 843
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YD TVRN+ G+ ++QF+Y +G
Sbjct: 844 TGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAYGEDG 882
Score = 45.4 bits (106), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D +R+ ++I GI+A L L + IS G + HL ++A+ ++ G
Sbjct: 1341 VDHSRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAVLADVMTYRGHL 1400
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + P ++ F + AA D+++G + + G++P +
Sbjct: 1401 MAITRHGI-----NRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPL 1455
Query: 1252 GTG 1254
GTG
Sbjct: 1456 GTG 1458
Score = 40.8 bits (94), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+P +G + T C +C C GHFG I+ + H F+ + K+L +C C
Sbjct: 54 DPAMGTIDKTQRCQTCSGT-MAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCFHC 109
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 191 bits (484), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 157/585 (26%), Positives = 273/585 (46%), Gaps = 77/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 349 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNMERLKELVEYG 408
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R + DGD VL NR P
Sbjct: 409 PHPPPGKTGAKYIIREDG----QRLDLRFLKKSSDRHLELGYKVERHMNDGDFVLFNRQP 464
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 465 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 523
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + P I K
Sbjct: 524 PKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNILMWWEEFDGKIPIPTILK 583
Query: 536 ISKDSVWSGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAE-GSS 579
+W+GKQ+FS+++P PD EY S V I G++++
Sbjct: 584 --PRPLWTGKQIFSLIIPKQINLMRQAFWHPDGEYGDLSPGDTQVRIEKGEVVAGTLCKK 641
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L +G+L + + D FL Q ++ WL +G ++ + D + +
Sbjct: 642 TLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGD------TIADAA 695
Query: 639 LMDEIFYGLREAQ-DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
M++I + +A+ D + + D + +++ R+++ S+E + + L++
Sbjct: 696 TMEKINETITKAKHDVKDLIKKAQDKQL-------EAQPGRTMKE---SFENRVNGILNK 745
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
A DA A K ++ N+L AM AGSKG + + Q + C+G Q+
Sbjct: 746 ARDDAGAS--------AQKSLAESNNLKAMVTAGSKGTFINISQMTACVGQQNVEGK--- 794
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 795 RIPYGFVDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTA 849
Query: 818 ADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 850 VKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDG 893
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 20 ISLGISTDTEKEKLSVMEIGA----------VSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
+ GI + E +++V +I + + +++PRLG + +C +C A C
Sbjct: 18 VQFGILSPDEIRQMAVCKIESSETYDRGKPKIGGLSDPRLGTIDRHTKCETC-AGSMTEC 76
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
GHFG+++ + H FL + +L +C C
Sbjct: 77 PGHFGYLELAKPMFHIGFLKTVLSILRCVCYNC 109
Score = 40.8 bits (94), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D +R+ +++ GI+A L L IS G + HL I+ +
Sbjct: 1340 CHED---VDASRTTSNHLIEVIEVLGIEAVRNSLLKELRDVISFDGSYVNYRHLAILCDV 1396
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D+L+G + +
Sbjct: 1397 MTYRGHLMAITRHGI-----NRNDTGPMMRCSFEETVDILLDAAVYAEADHLKGVTENIM 1451
Query: 1245 WGKVPSVGTG 1254
G++ +GTG
Sbjct: 1452 LGQLAPIGTG 1461
>gi|83320448|gb|ABC02851.1| RNA polymerase II largest subunit, partial [Rhopalomyces elegans]
Length = 792
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 145/560 (25%), Positives = 259/560 (46%), Gaps = 70/560 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LE 375
++GKR D R V+TGDPN+ + E+G+P +A+ L E + +N +L ++
Sbjct: 271 LMGKRVDFSARTVITGDPNLSIDEVGVPLLIAKNLTFPEIVTPYNVGKLQELVANGPNAH 330
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L DGD+V+ NR PS+H S+
Sbjct: 331 PGARYVYRDNG----ERIDLRFNRRGGDIPLQYGWRVERHLVDGDLVIFNRQPSLHKMSM 386
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P +N +P++ DFDGD ++ ++PQ++ ++ E+ E+ + +Q+++
Sbjct: 387 MGHRVRVMP-HHTFRLNLSVTTPYNADFDGDEMNMHVPQSLESKAEIQEICMVPRQIVSP 445
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q ++ + QD+L ++ LS Q + M+ P+ R +P I K +W
Sbjct: 446 QKNAPVMGIVQDTLCGVNIFTRRDTFLSRQQTMNILMWVPNWDGRIPAPAILK--PKPLW 503
Query: 543 SGKQLFSMLLP------------PDFEY---TFPSKDVYISGGKLISAEGSSWLRDYEGN 587
+GKQ+ ++++P PD E+ T V I G+L++
Sbjct: 504 TGKQMLTLIIPKGVSYTGAHSGNPDGEHPHLTPNDTKVLIENGELLTGIVCKKTVGVGSA 563
Query: 588 LFQYLIKRYRDKVLDFLY-AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L Q +++ + +V + + Q + WL G ++ + D H+ M+ I
Sbjct: 564 LIQVIMREHGPEVTKYFFNGIQHITNYWLLQHGFSIGIGDAVADRHT------METITNT 617
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ A+ N +++ ++ + L D E +L+ E Y+ R L++A +A K
Sbjct: 618 ITNAKTAVN--EVIYEAQQDRL----DCEPGMTLR-ETFEYKVNRE--LNRARENAGKSA 668
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
++ ++N++ M AGSKGN L + Q + C+G Q+ R P
Sbjct: 669 QSSLR--------RNNNVKLMVTAGSKGNYLNICQMTACVGQQNVEGK---RIPFGFQYR 717
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D+T ++ + V+NS+L GL P E F H+++ R+ G +
Sbjct: 718 TLPHFTKDDHTPASRGF-----VDNSYLRGLTPTEFFFHAMSGREGLIDTAVKTAETGYI 772
Query: 825 TRRLMFFMRDLCTAYDGTVR 844
RRL+ + D+ YDGTVR
Sbjct: 773 QRRLVKALEDVMVKYDGTVR 792
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 162/585 (27%), Positives = 277/585 (47%), Gaps = 66/585 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 299 LMGKRVDFSARTVISGDPNLDLDQVGVPLSIARTLTYPEIVTPYNIHRLTEYVRNGPNEH 358
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 359 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 414
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 415 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSP 473
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P I +WSG
Sbjct: 474 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWIPNWDGVIPPPAIIKPKPLWSG 533
Query: 545 KQLFSMLLPP--------DFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLI 593
KQ+ SM +P D KD + I G++I + G L ++
Sbjct: 534 KQILSMAIPKGIHLQRFDDGNDMLSPKDKGILIVDGEIIFGVVDKKTVGATGGGLIHTVM 593
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D + + K M ++ ++EA+
Sbjct: 594 REKGSQVCAQLFSSIQKVVNYWLLHNGFSIGIGD------TIADKDTMRDVTTTIQEAKQ 647
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 648 --KVQEIIMDAQQNRL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 698
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 699 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFT 747
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 748 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 802
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSY---NIEGTSTPTGEIGDQP 872
+ D+ YDGT RN+ G+ I+QF Y I+GT+ + P
Sbjct: 803 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDGIDGTAVEKQSVDTIP 846
Score = 46.2 bits (108), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + +C +CG +D C GHFG I+ + H F++ I K+ +C C
Sbjct: 13 LNDPRLGSIDRNFKCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHC 70
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio
anubis]
Length = 1970
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL---SKSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|167043884|gb|ABZ08573.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG3E18]
Length = 1273
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 163/583 (27%), Positives = 278/583 (47%), Gaps = 70/583 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ L E+G+P Q+A +L I E + WN E+L + ++ G
Sbjct: 323 GKRVDFSSRTVISPDPNLDLGEVGVPVQIATKLTIPEIVTEWNIEKLKKLVVNGPNTFPG 382
Query: 378 ELYVCRKGGLVRIRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G V+IR D+LE+G ++ R L+DGDIVL NR PS+H S++A
Sbjct: 383 VNYIVRPDG-VKIRLDFVEDPSIIADSLEIGYLVERHLSDGDIVLFNRQPSLHQMSIMAH 441
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+VLP ++P C P++ DFDGD ++ ++PQ+ AR E L+ + +QLI+ + G
Sbjct: 442 HVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAMLLMRVQEQLISPRFG 500
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQL 547
++ +D +T +LL +D L+ + M + P+ SK+ +++GKQL
Sbjct: 501 GPIIGGLRDFITGVYLLTKDDTTLTKQEFSNYAMLGRYDGKLPEPKINSKNGLLYTGKQL 560
Query: 548 FSMLLPPDFEYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKR 595
FS+ LP DF + S KDV I G+L+S + + + ++ + K
Sbjct: 561 FSLFLPSDFNFVMTSKWSRGTNGKQKDVVIKNGELVSGVIDKTGIGAEEPESILHRIAKD 620
Query: 596 Y-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
Y +K FL + ++ ++++ G + SDL L+ R+ + +++ Q
Sbjct: 621 YGNEKANKFLNSVLIIIKQFITDYGFSYGYSDLELSEK--DRQAIDNDL------QQTYK 672
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
+++ D + L + + + + ++YE + A +A + A NLA
Sbjct: 673 TVAEIIADKNKGTLKGLRGMTIAETAEAK-ITYELAK--ARDRAGITAN-------SNLA 722
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR---- 770
DN+ M G++G+ L + Q + LG Q R L NR
Sbjct: 723 -----DDNAGKIMATTGARGSALNVGQMAGALGQQS-------RRGKRLHTGYGNRTLPH 770
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRR 827
+ D+ + ++ S +F GL+ LE F H++ R+ D A G + RR
Sbjct: 771 FKEHDDNPDSHGFVKS-----NFRDGLSVLEFFFHAMGGRE-GLVDTAVRTQQSGYMQRR 824
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
L+ + YDGTVR+ +G+ I+QF Y +G + G+
Sbjct: 825 LINAFEHIRLEYDGTVRDPHGH-IIQFLYGEDGIDVAKSDHGE 866
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ GI + + E K SV EI A + + RLG P +C +CG
Sbjct: 14 IDGIKFCVWSPNEIRKYSVAEITAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTCGNTS 73
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG ++ +LH F+ +I KLLN+ C C ++
Sbjct: 74 AR-CPGHFGHVELAEPVLHIAFIDNIHKLLNATCRACSRLK 113
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA-directed RNA polymerase II subunit
RPB1
Length = 1970
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 160/590 (27%), Positives = 274/590 (46%), Gaps = 89/590 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R + DGD++L NR PS+
Sbjct: 413 PDIHPGARYVIRSTG----ERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL++L +
Sbjct: 469 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
Q+++ Q L+ + QD+L + + V LS Q+ + ++ P P I K
Sbjct: 528 QIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILK-- 585
Query: 538 KDSVWSGKQLFSMLLPPDF-------------EYTFPSKD--VYISGGKLISAEGSS-WL 581
W+GKQL SM+LPP E P D V + GG+L+ S +
Sbjct: 586 PRPRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTV 645
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y + ++F AQ V+ WL G ++ + D + +KI
Sbjct: 646 GATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDT-IPDLPTIQKI-- 702
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VD + SA D+ + L G ++ ++E + S AL+ A
Sbjct: 703 ----------ENAVRVRKEEVD---DITASATDN-TLEPLPGMNVRETFESKVSRALNNA 748
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PL 755
+A ++L N+ + M ++GSKG+++ + Q + +G Q P
Sbjct: 749 RDEAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVGQQSVEGKRIPF 800
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 801 GFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREG 846
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 847 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGEDG 895
Score = 47.4 bits (111), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus
griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase II subunit A; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1970
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 158/591 (26%), Positives = 268/591 (45%), Gaps = 83/591 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 265 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 324
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 325 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 380
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 381 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 439
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 440 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILK 499
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V I G+L+
Sbjct: 500 --PRPLWTGKQVFNLIIPKQINLIRQSAWHSETETGFITPGDTQVRIERGELLCGTLCKK 557
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 558 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAA 611
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKD----SESTRSLQGEHLSYEKQRSAA 694
MD I + +A++ +M+A+D +E R++ S+E + +
Sbjct: 612 TMDTISETISKAKNDVK----------ELIMAAQDKALEAEPGRTMTE---SFENRVNQV 658
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
L++A DA + A S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 659 LNKARDDA--------GSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 710
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R P+ DN ++ + VENS+L GL P E F H++ R+
Sbjct: 711 ---RIPYGFIGRTLPHFTKDDNGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLI 762
Query: 815 SDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G +
Sbjct: 763 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMDS 812
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|261330838|emb|CBH13823.1| RNA polymerase IIA largest subunit, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 948
Score = 190 bits (483), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 271/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTE-FARRTVYP 405
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 406 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 465
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 466 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 524
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 525 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 582
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 583 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 642
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 643 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 683
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 740
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH +
Sbjct: 741 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFM----- 790
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 791 ----LDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 841
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 842 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 874
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 155/579 (26%), Positives = 269/579 (46%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 274 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEH 333
Query: 377 -GELYVCRKGGLVRIRRIDAL---ELGDI-------IYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID GDI + R + DGD ++ NR PS+H S+
Sbjct: 334 PGAKYVIRDSG----ERIDLRHHKRAGDINLAYGWKVERHIVDGDFIIFNRQPSLHKESM 389
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 390 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 448
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ ++ + ++ P P IFK +W
Sbjct: 449 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKERVMNILLWVPDWDGVIPQPAIFK--PKPLW 506
Query: 543 SGKQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQ+ +++PP E FP D + I+GG+L+ + G ++I
Sbjct: 507 TGKQILGLVIPPGLNLLRGSEEGFFPLNDDGLLIAGGELMYGLLNKKSVGASGGGVIHII 566
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + ++F AQ V+ WL G ++ + D ++ +R+ +
Sbjct: 567 FNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNT-------------IRQIE 613
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
N Q+ V+ + + SL G ++ ++E + S AL++A DA +
Sbjct: 614 GAVNKQKDEVEE----ITKSATENQLESLPGMNVRETFESKVSKALNKARDDAGSVTEEN 669
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHEL 763
+++L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 670 LKDL--------NNAIQMARSGSKGSTINISQTTAVVGQQSVEGKRTPFGFKYRTLPH-- 719
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 720 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 767
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 768 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFIYGEDG 805
>gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|261327848|emb|CBH10825.1| RNA polymerase IIA largest subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 1765
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 270/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTE-FARRTVYP 405
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 406 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 465
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 466 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 524
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 525 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 582
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 583 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 642
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 643 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 683
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 740
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 741 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 788
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 789 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 841
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 842 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 874
>gi|72388454|ref|XP_844651.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62360128|gb|AAX80548.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70801184|gb|AAZ11092.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 270/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTE-FARRTVYP 405
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 406 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 465
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 466 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 524
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 525 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 582
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 583 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 642
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 643 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 683
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 740
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 741 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 788
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 789 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 841
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 842 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 874
>gi|302348974|ref|YP_003816612.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
345-15]
gi|302329386|gb|ADL19581.1| DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans
345-15]
Length = 889
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 212/887 (23%), Positives = 365/887 (41%), Gaps = 147/887 (16%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P G P C CG R+ C GHFG I ++ P+ I +LL S C C I
Sbjct: 54 DPHFGAIEPGERCPVCG-NTRQDCPGHFGKIDLARPVVLPHLGDKIYQLLQSTCRSCGRI 112
Query: 106 RKERQKGA---------------------------GSSRKEQPR--VCKYCVR--NPAQW 134
QK A SS E P +Y ++ P +
Sbjct: 113 LIPPQKAAYMLGIYRRLREKWPLLADIFVEEVIKEASSATECPHCGAKQYKIKFIKPYNF 172
Query: 135 Y---PRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNR 191
Y P +L+ D + E+L +K+PDD + +D + S +P
Sbjct: 173 YEVRPEGEVRLTPSD----------VRERL----EKIPDDDVELLGWDPK----SARPEW 214
Query: 192 KVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFF 250
VL+ V L V PSI E ++D + N R+ + + E +
Sbjct: 215 AVLTVLPVPPL--SVRPSITMESGSRAEDDLTHALAEIVRQNERLKNFISSSAPES-MIE 271
Query: 251 DNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGL 310
+ W + Y D EL ++ Q + K + R E R + N++
Sbjct: 272 EAWQALQNVIAAYI--DNELPNIYQLSHRGRKQLKTLAQRLKGKEGRLRGNLN------- 322
Query: 311 RWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI- 369
GKR + R V++ DP I + E+G+P +VA+ L + + +N E +
Sbjct: 323 --------GKRVNFSSRTVISPDPLISINEVGVPIEVAKILTVPMVVTKFNIEEARKYVL 374
Query: 370 --SFRLLEKGELYVCRKGGLVRIRR-------IDALELGDIIYRPLTDGDIVLINRPPSI 420
++ +Y R+G + +R ++LE+GDI+ R L DGDIVL NR PS+
Sbjct: 375 NGPYQWPGATIVYKKREGVKLDLRYQRNLRQLAESLEVGDIVERHLIDGDIVLFNRQPSL 434
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ V+V+P +N L C+P++ DFDGD ++ ++P+ AR E L+ ++
Sbjct: 435 HRMSIMGHKVRVMP-GRTFRLNLLVCAPYNADFDGDEMNLHVPRLEEARAEALNLLLVEN 493
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
++ + G ++ QD ++ A+LL + L + +L + P+ +
Sbjct: 494 HILTPRYGGPIIGGRQDYISGAYLLTVKTTLFDREAVGRLLAAASYSGELPEPAILKPRP 553
Query: 541 VWSGKQLFSMLLPPDFEYT-----------------FPSKDVYISGGKLISA--EGSSWL 581
+W+GKQL S+ LP DF ++ F V I G+L+ + ++
Sbjct: 554 LWTGKQLVSLFLPSDFNFSGRAKINAGDLKCDGEDCFFDSYVVIRRGRLLEGVFDKNTIG 613
Query: 582 RDYEGNLFQYLIKRYRD----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ ++ Y+ Y + ++LD +Y + L +RG ++S+SD+ + + +
Sbjct: 614 AEQPESVLHYIALEYGNAAARQLLDTMY---RMFIRMLELRGFSISISDIEIPKEARDKI 670
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
M E EA++ +++ + N + + G L +L
Sbjct: 671 AKMTE------EAKEDV---MKLIEQYRNGTLEI--------IPGRTL------EESLEL 707
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
+ + + D A Y + N+ M + G++G+ + + Q + LG Q
Sbjct: 708 KIIQRLQKLRDDAGKTAIGYMNPFNNAFIMARTGARGSDINITQMAAMLGQQTVRG---R 764
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R R GD + A+ ++ S +F GL P E F H+ R+ D
Sbjct: 765 RIVRGFRTRTLPHFRPGDLSPEARGFVVS-----NFRDGLKPHEVFFHAAGGRE-GLVDT 818
Query: 818 A---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
A G + RRL+ ++DL AYDGTVR++ N I+QF Y +G
Sbjct: 819 ALKTSQSGYMQRRLINALQDLHVAYDGTVRDSQDN-IIQFRYGEDGV 864
>gi|133329|sp|P17545.1|RPB1B_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-B;
Short=RNA polymerase II subunit B1-B; AltName:
Full=DNA-directed RNA polymerase II largest subunit B
gi|10503|emb|CAA31847.1| unnamed protein product [Trypanosoma brucei]
Length = 1766
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 270/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTE-FARRTVYP 406
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 407 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 467 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 526 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 583
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 584 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 643
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 644 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 684
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 685 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 741
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 742 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 789
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 790 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 842
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 843 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 875
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P + K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAVLK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 VPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
V Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|72393537|ref|XP_847569.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
gi|62175081|gb|AAX69230.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
gi|70803599|gb|AAZ13503.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1765
Score = 190 bits (483), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 270/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTE-FARRTVYP 405
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 406 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 465
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 466 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 524
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 525 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 582
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 583 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 642
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 643 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 683
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 740
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 741 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 788
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 789 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 841
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 842 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 874
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 223/944 (23%), Positives = 384/944 (40%), Gaps = 169/944 (17%)
Query: 35 VMEIG--AVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
VME G + + +PR G+ + + C +C A + C GHFG I + H FL+ I
Sbjct: 42 VMEGGRPKLGGLMDPRQGVVDRLSRCQTC-AGNMTECPGHFGHIDLAKPVYHSGFLTKIV 100
Query: 93 KLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTA 152
K L +C C + PR+ + ++ Q PR R GKT
Sbjct: 101 KTLRCVCFYCSKLL---------VSPTTPRIKEILQKSKGQ--PRKRLAAVYDLCKGKT- 148
Query: 153 IIVEIDEKLSKKNKKLPD---------------------------DYWGFIPFDAQQEEN 185
I E +++ + + P W + D+Q++
Sbjct: 149 -ICEGGDEMDLQREDDPSVQQPKRAGHGGCGRYQPKIRRAALELTAEWKHLNEDSQEK-- 205
Query: 186 SVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEV 238
+ L+ ++V + + + S E +IL D F + PV P R V
Sbjct: 206 -----KIALTAERVHEIFRHI--SDEECYILGMDPKFARPDWMIVTVLPVPPLCVRPAVV 258
Query: 239 PHAFSHEKKLFFDNWTRHLKKMVDYRG---RDIEL---SHLVQDCLKISKLHLDKSSRKD 292
+ + D+ T L ++ R+ E +H++ + +K+ + H+ D
Sbjct: 259 MFGSARNQ----DDLTHKLSDIIKANNELKRNEETGAATHILSENVKMLQFHVATLVDND 314
Query: 293 SAEV--------RQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIP 344
+ R K I I+ ++GKR D R V+T DPN+++ ++G+P
Sbjct: 315 MPGLPRAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVP 374
Query: 345 CQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA-------- 395
+A+ L E + +N +++ + + G Y+ R RID
Sbjct: 375 RSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIIRDND----ERIDLRFHPKSSD 430
Query: 396 --LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
L+ G + R + DGD+++ NR P++H S++ VKVLP S+ +N SP++ DF
Sbjct: 431 LHLQCGYKVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPWSTF-RMNLSVTSPYNADF 489
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LTA + + V L
Sbjct: 490 DGDEMNLHVPQSMETRAEVENIHITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 549
Query: 514 HLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEY 558
QM + M P + P I K +W+GKQ+FS+++P PD E
Sbjct: 550 KEQMFNVLMHLPIWDGKMPQPAILK--PKPLWTGKQVFSLIIPGNVNMIRTHSAHPDEED 607
Query: 559 TFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQE 609
P K + K++ G L G+L +V Y Q
Sbjct: 608 DGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQT 667
Query: 610 VLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLM 669
V+ WL + G ++ + D S + EI +++A++ + +++ +H N +
Sbjct: 668 VINNWLLLEGHSIGIGD------SIADPQTYLEIQKTIKKAKE--DVIEVIQKAH-NMEL 718
Query: 670 SAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFK 729
+ R ++E Q + L+ A A K ++ N+L AM
Sbjct: 719 EPTPGNTLRQ------TFENQVNRILNDARDKT--------GGSAKKSLTEYNNLKAMVV 764
Query: 730 AGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSY 783
+GSKG+ + + Q C+G Q+ P FR PH + Y
Sbjct: 765 SGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK----------------DDY 808
Query: 784 IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAY 839
P + VENS+L GL P E F H++ R+ G + RRL+ M + Y
Sbjct: 809 GPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHY 868
Query: 840 DGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
DGT+RN+ G Q++Q Y +G + E P LS A +
Sbjct: 869 DGTIRNSVG-QLIQLRYGEDGLAGEHVEFQSLPTVKLSNRAFEK 911
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 155/573 (27%), Positives = 268/573 (46%), Gaps = 70/573 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 355 LMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELVRNGPTTY 414
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+LG I+ R L DGD VL NR PS+H S+++ V
Sbjct: 415 PGARYVVRDTGERIDLRYNKRADAFLQLGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRV 474
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+++ Q+ +
Sbjct: 475 RLMPYST-FRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIVSPQANKP 533
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L +Q + ++ P +P I K +W+GKQ+
Sbjct: 534 VMGIVQDTLCGIRKFTLRDTFLDWNHVQNILLWVPEWDGVVPTPAILK--PKPLWTGKQI 591
Query: 548 FSMLLPPDFEYTFPSKD-----VYISGGKLISAEGSSWLRDYE------GNLFQYLIKRY 596
S+ +P S++ V+ G + + E + D + G L + +
Sbjct: 592 LSLTIPRGINIQRASENKSSNPVFDDGMLIENGEFIYGIVDKKIVGASAGGLVHVVFREK 651
Query: 597 RDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+ L+ Q ++ WL G ++ + D + + F A+
Sbjct: 652 GPEATKQLFTGLQMIVNFWLFHNGFSIGIGDTIADARTME--------FITKNIAESKAK 703
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
Q++ D++M+ L + K + R S+E + L++A + ++ A
Sbjct: 704 VAQVIEDANMDRLKT-KPGMTLRE------SFESEVEGILNKARDSSGQY--------AQ 748
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCAAWN 769
K+ +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 749 KHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPH-------- 800
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + A+ + VENS+L GL P E F H++ R+ G + RR
Sbjct: 801 -FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 854
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
L+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 855 LVKALEDVMVCYDGTVRNSLGD-LIQFVYGEDG 886
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 20 ISLGISTDTEKEKLSVMEIG---AVSEVT---------NPRLGLPNPTNECSSCGAKDRK 67
+ GI + E + +SV++I + E T +PR+G + +C +CG +
Sbjct: 19 VQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRMGTIDRNFKCQTCG-EGMA 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I+ + HP F + + K+L IC C ++ + A + +
Sbjct: 78 ECPGHFGHIELARPVFHPGFFNKVKKILECICVNCGKLKADITDPAFAEKIRH------- 130
Query: 128 VRNPAQ 133
+RNP Q
Sbjct: 131 IRNPKQ 136
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 190 bits (482), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
>gi|341581877|ref|YP_004762369.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
gi|340809535|gb|AEK72692.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
Length = 905
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 167/596 (28%), Positives = 274/596 (45%), Gaps = 94/596 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DP I + E+G+P VA L + E++ +N+E+L + EK
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPMAVAMELTVPEKVTEFNFEKLKKMV-LNGPEKYP 379
Query: 377 GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G YV G RIR ++ L+LG + R L DGDIVL NR PS+H S++A
Sbjct: 380 GANYVIDPEGR-RIRLMENNLEIIAEKLDLGWTVERHLMDGDIVLFNRQPSLHRMSIMAH 438
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 439 RVRVMPYRTF-RLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYG 497
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGK 545
L++ QD ++ +LL + + +++Q+ MF PD + + +WSGK
Sbjct: 498 GPLIAGIQDHISGGYLLTREGAYFTRSEVEQMLMFAGIDIRELPEPDKVEDGVE-LWSGK 556
Query: 546 QLFSMLLPPDFEYTFPSK---------------------------------DVYISGGKL 572
+FS++LP D + +K VYI GKL
Sbjct: 557 TIFSLVLPEDLTIWYRNKLCDEPERCEALEKLIEEKLVPDPGEVRKLAYDGFVYIQNGKL 616
Query: 573 ISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
+S + ++ R+ +G L +++ Y D+ FL ++ ++ +G T ++ D L
Sbjct: 617 LSGAIDKKAYGRE-DGKLLDLIVREYGVDRARQFLDQVTKLAIWTITHKGFTTAIDDEDL 675
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SY 687
S + +D I +REA++ +N L+ A + L G+ L +
Sbjct: 676 PSEA------LDRIHEIIREAEE-----------RVNRLIEAYKNGELEPLPGKTLEETL 718
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E A L++A +A K +A +Y N + M K G++G +L + Q + LG
Sbjct: 719 ESNIMAVLAEARDNAGK--------VAERYLGMGNHAVIMAKTGARGKMLNITQMAAMLG 770
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q +R + GD AK + V NS+ +GL P E F H++
Sbjct: 771 QQSIRGKRLYRG---YRGRVLTHFKPGDLGARAKGF-----VTNSYKSGLTPQEYFFHAM 822
Query: 808 TSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 823 GGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFKYGEDG 876
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
I+ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 IIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVVDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
C GHFG ++ I+H F I ++L S C +C I+
Sbjct: 67 -AGDCPGHFGHVELARPIVHVGFAKTIHRVLESTCRECGRIK 107
>gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit [Trypanosoma brucei]
Length = 1765
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 271/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 347 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTE-FARRTVYP 405
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 406 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 465
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 466 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 524
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 525 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 582
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 583 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 642
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 643 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 683
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 684 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 740
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH +
Sbjct: 741 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFM----- 790
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 791 ----LDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 841
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 842 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 874
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 164/579 (28%), Positives = 267/579 (46%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 346 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAY 405
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 406 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 465
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++ S +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 466 KLM-YYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 524
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFS 549
++ + QD+L L Q+Q + ++ P S I I K +W+GKQ+ S
Sbjct: 525 VMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGSVPIPAILKPKPLWTGKQILS 584
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQYLI 593
+ +P PD + + P D V I G+LI G+S +G L +
Sbjct: 585 LAIPRGINIHRSPDPKSSNPVFDDGVLIENGELIFGIVEKKTVGAS-----QGGLVHVVF 639
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ + L+ Q V+ WL G ++ + D + + + M I + A
Sbjct: 640 REKGPEATRQLFTGLQMVVNYWLFHNGFSIGIGD------TIADRGTMSYITQTI--ADS 691
Query: 653 TCNFQQLMVDSHMNFLMSAKD---SESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
N +++ D+ + L +A ES SL L+ + S +Q
Sbjct: 692 KANVAKIINDATHDRLKAAPGMTIRESFESLVERQLNLARDTSGQYAQ------------ 739
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHEL 763
K+ +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 740 ------KHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPH-- 791
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 792 -------FTKDDFSPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 839
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 840 GYIQRRLVKALEDVMVCYDGTVRNSLGD-LIQFVYGEDG 877
Score = 50.4 bits (119), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA----VSEVTNPRLGLPNPTNECSSCGAKDR 66
EV GIL+ + + + E VM+ + + +PR+G + +C +CG +
Sbjct: 18 EVQFGILSPEEIKAISVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCG-EGM 76
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + HP F+ + K+L SIC C ++ +
Sbjct: 77 SECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKAD 118
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 165/587 (28%), Positives = 273/587 (46%), Gaps = 98/587 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P A L E + +N ++LS + E
Sbjct: 374 LMGKRVDFSARTVITGDPNLSLDEVGVPRSTARILTYPETVTPYNIKKLSALVKNGPNEH 433
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R + DGD V+ NR PS+H S+
Sbjct: 434 PGAKYVIRDTG----ERIDLRHHKRAGEIALQYGWKVERHIVDGDFVIFNRQPSLHKESM 489
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+VLP S+ +N SP++ DFDGD ++ ++PQ+ R E+++L + Q+++
Sbjct: 490 MGHRVRVLPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEVSQLCMVPLQIVSP 548
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + L V L Q+ + ++ P F P I K S W
Sbjct: 549 QRNGPLMGIVQDTLCGVYKLCRRDVFLDRDQLMNVLLWVPEWDGTFPPPAIVKPSPR--W 606
Query: 543 SGKQLFSMLLP-------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGN 587
+GKQL SM++P PD E P D + ++ G+L+ + G+S +G
Sbjct: 607 TGKQLISMVIPKGINLVKPDKEGMSPLADTGLCVTDGELMFGLFSKKSVGAS-----QGG 661
Query: 588 LFQYLIKRYRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ + Y +K + F Q V+ WL G ++ + D + +
Sbjct: 662 MIHTI---YNEKGWQTCMGFFNGTQRVVNYWLLHNGFSIGIGDTIPDAAT---------- 708
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVD 701
+++ QD ++ VD A+D+ +L G ++ ++E + S +L+ A D
Sbjct: 709 ---IQKIQDIVTQRKAEVDE---VTKQAQDN-VLEALPGMNIRETFENKVSRSLNLARDD 761
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR 758
A +++L N+ + M ++GSKG+ + + Q S +G Q P F+
Sbjct: 762 AGSATEKSLKDL--------NNAIQMARSGSKGSNINISQMSAVVGQQSVEGKRIPFGFK 813
Query: 759 F---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
+ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 814 YRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLID 859
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 860 TAVKTAETGYIQRRLVKALEDVMCKYDGTVRNSLGD-IIQFCYGEDG 905
Score = 45.4 bits (106), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D TR++ +N +GI+A L L ++ G + HL ++ + +++
Sbjct: 1356 IDGVDPTRAYSNNFVEVLEVFGIEATRGALLKELTQVLAFDGSYVNQRHLTLLCDVMTSR 1415
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + + G+ + + + ++ F ++AA AG +D+ +G + + G++
Sbjct: 1416 GHLMAITRHGI-----NRADTGALMRCSFEETVEILLEAAAAGELDDCRGISENVMLGQL 1470
Query: 1249 PSVGTGGHFDIIYSGEG 1265
+GT G FD +Y EG
Sbjct: 1471 APMGT-GEFD-VYLDEG 1485
Score = 41.6 bits (96), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P +G + + +C++C ++ C GHFG I+ + H F++ I K+L ++C C
Sbjct: 56 LNDPHMGSIDRSFKCATCD-ENMSECPGHFGHIELAKPVFHIGFITKIKKVLETVCFNCG 114
Query: 104 TI 105
I
Sbjct: 115 KI 116
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 160/590 (27%), Positives = 273/590 (46%), Gaps = 89/590 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 359 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNG 418
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R + DGD++L NR PS+
Sbjct: 419 PDIHPGARYVIRSTG----ERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSL 474
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL++L +
Sbjct: 475 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPL 533
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
Q+++ Q L+ + QD+L + + V LS Q+ + ++ P P I K
Sbjct: 534 QIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILK-- 591
Query: 538 KDSVWSGKQLFSMLLPPDF-------------EYTFPSKD--VYISGGKLISAEGSS-WL 581
W+GKQL SM+LPP E P D V + GG+L+ S +
Sbjct: 592 PRPRWTGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTV 651
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y + ++F AQ V+ WL G ++ + D + +KI
Sbjct: 652 GATGGGIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDT-IPDLPTIQKI-- 708
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VD SA D+ + L G ++ ++E + S AL+ A
Sbjct: 709 ----------ENAVRVRKEEVD---EITASATDN-TLEPLPGMNVRETFESKVSRALNNA 754
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PL 755
+A ++L N+ + M ++GSKG+++ + Q + +G Q P
Sbjct: 755 RDEAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVGQQSVEGKRIPF 806
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 807 GFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREG 852
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 853 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGEDG 901
Score = 47.4 bits (111), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C++C + C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 61 LNDPRLGTIDRNWRCATC-EEGINGCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCG 119
Query: 104 TIR 106
I+
Sbjct: 120 KIK 122
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
Length = 1853
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 222/950 (23%), Positives = 403/950 (42%), Gaps = 167/950 (17%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSV--MEIGAVSE--------VTNPRLGLPNPTNECS 59
+ P + + GI E +++SV +E V E + +PR G+ + C
Sbjct: 8 FQAPLRTVCRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVIDRRGRCM 67
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKE 119
+C A + C GHFG ++ + H FL+ K+L +C C + + K
Sbjct: 68 TC-AGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLID---------KT 117
Query: 120 QPRVCKYCVRNPAQWYPRMRFKL-----SSKDLSGKTA-----IIVEIDEKLSKKNKKLP 169
PRV + P+ R L SK + A + ++D+ +++ KK+P
Sbjct: 118 NPRVMDILKKTSGN--PKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDPMNE-GKKVP 174
Query: 170 DDYWGFIP--------FDAQQEEN---SVKPNRKVLSCKQVSYLLKDVDPSIREEFILSK 218
+ P +A+ ++N + + +L+ ++V + K + + + ++
Sbjct: 175 AGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQI--TDEDILVIGM 232
Query: 219 DAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR----- 266
D F + PV P R V F K D+ T L ++ +
Sbjct: 233 DPQFARPEWMICTVLPVPPLAVRPAVV--TFGSAKNQ--DDLTHKLSDIIKTNQQLQRNE 288
Query: 267 -DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIK 314
+ +H++ D +++ + H L +++K ++ K + G I+
Sbjct: 289 ANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQ-RLKGKEGR--IR 345
Query: 315 DVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLL 374
++GKR D R V+T DPN+ + +G+P +A+ L E + +N ++L ++
Sbjct: 346 GNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDT 405
Query: 375 E-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPH 423
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 406 QYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKM 461
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++ VK+LP S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +QLI
Sbjct: 462 SMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLI 520
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDS 540
Q+ + ++ + QD+L A ++ + + + M L M+ P + P I K
Sbjct: 521 TPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILK--PKP 578
Query: 541 VWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGSSW 580
+W+GKQ+FS+++P PD E + P K V I G+L+S S
Sbjct: 579 LWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKT 638
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ GNL + ++ Y+ Q V+ WL G T+ + D +A S
Sbjct: 639 VGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGDT-IADQSTYL--- 694
Query: 640 MDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+I +R+A QD + + + + ++ + + L+ + R+ + +Q
Sbjct: 695 --DIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQK 752
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PL 755
S+ F N+ +M +GSKG+ + + Q C+G Q+ P
Sbjct: 753 SLSEF------------------NNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPF 794
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
FR PH + D +K + VENS+L GL P E F H++ R+
Sbjct: 795 GFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTPSEFFFHAMGGREG 840
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ Q+VQ Y +G
Sbjct: 841 LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA-QMVQLRYGEDG 889
>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
Length = 1014
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 156/579 (26%), Positives = 269/579 (46%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 391 MGHRVRVVPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + ++ P P I K W
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKDQVMNILLWVPDWDGVIPQPAILKPRPK--W 507
Query: 543 SGKQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQL S+++P E P+ D +++ GG+L+ S ++I
Sbjct: 508 TGKQLISLVIPAGLNLIRTSEEGLSPANDDGLFVHGGELMYGLLSKKSVGASAGGIIHII 567
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + ++F AQ V+ WL G ++ + D H+ +++ +
Sbjct: 568 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIE 614
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
D N Q+ V SA ++E L G ++ ++E + S AL++A DA
Sbjct: 615 DAVNNQKADV---AEITRSATENE-LEPLPGMNVRETFESKVSKALNKARDDAGTKTEES 670
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHEL 763
+++L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 671 LKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH-- 720
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 721 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 768
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 769 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFIYGEDG 806
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 160/584 (27%), Positives = 271/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVDNG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGARYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLMDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + + SP I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWENFDGKIPSPTILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPSKD-VYISGGKLISAE-GSS 579
+W+GKQ+F++++P + P V I G+++S
Sbjct: 503 --PRPLWTGKQVFNLIIPRQINLIRYSAWHSESETGFITPGDTCVRIEKGEVLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + +
Sbjct: 561 TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGD------TIADAA 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M+ I + +A+ N QL+ +H L ++E R++ S+E + + L++A
Sbjct: 615 TMETINETISKAKAEVN--QLIQLAHQKAL----EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P + D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPFGFFGRSLPHFTRDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
Length = 870
Score = 190 bits (482), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 155/570 (27%), Positives = 270/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN++L ++G+P +A L E + +N +L+ + E
Sbjct: 151 LMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEMVTPYNIHKLTELVRNGPNEH 210
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G I+ R L D D VL NR PS+H S+
Sbjct: 211 PGLRYVFRDTG----ERIDLKYHKRAGDIALQYGWIVERHLMDNDPVLFNRQPSLHKMSM 266
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P SS +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+I+
Sbjct: 267 MAHRVKVMPYSSF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICAVPLQIISP 325
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + V + + ++ + + P + P+ + +W+G
Sbjct: 326 QSNKPVMGIVQDTLCGVRKMTLRDVFIEYDEVMNILYWIPSWDGVIPEPTIVKPKPLWTG 385
Query: 545 KQLFSMLLP-------PDFEYTFPSKD----VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQ+ SM++P D ++T+ S D + + G ++ + G L +
Sbjct: 386 KQMLSMVIPKGINLERKDEKFTYLSNDDTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVF 445
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V D Q+V+ WL G ++ + D + + + I + + A++
Sbjct: 446 REKGPQVCADLFGNMQKVVNYWLLHYGFSIGIGD------TIADAPTVKSITHTIVTAKE 499
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+ ++++ + N L E +L+ S+E+ S L+QA D K +Q+
Sbjct: 500 KVH--EIILKAQRNEL----PPEPGMTLRE---SFEQSVSQVLNQARDDVGKATADALQD 550
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
N++ M AGSKG+ + + Q S C+G Q R P + +
Sbjct: 551 W--------NNVKQMVSAGSKGSNINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 599
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 600 KDDYSPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 654
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ GN ++QF Y +G
Sbjct: 655 ALEDIMVHYDGTARNSLGN-VLQFVYGEDG 683
>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
Length = 1263
Score = 190 bits (482), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 167/579 (28%), Positives = 268/579 (46%), Gaps = 62/579 (10%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ L E+G+P VA +L I E + WN ER+ + I+ G
Sbjct: 318 GKRVDFSSRTVISPDPNLDLSEVGVPEVVAMKLTIPEIVTEWNIERMRKLVINGPEKFPG 377
Query: 378 ELYVCRKGGLVRIRR---------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G V+IR + LE+G ++ R L DGDIV+ NR PS+H S++A
Sbjct: 378 VNYIVRPDG-VKIRLDFVEDRSTIAETLEIGYLVERHLADGDIVMFNRQPSLHQMSIMAH 436
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+VLP ++P C P++ DFDGD ++ ++PQ+ AR E L+ + QLI+ + G
Sbjct: 437 YVRVLP-GKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAILLMRVQDQLISPRYG 495
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQL 547
++ +D +T A+LL +D LS + L M + P +KD ++GKQL
Sbjct: 496 GPIIGALRDFVTGAYLLTKDDTTLSIQEFSNLAMLGGYTDPLPKPATKTKDGPAYTGKQL 555
Query: 548 FSMLLPPDFEYTFPS----------KDVYISGGKLISA--EGSSWLRDYEGNLFQYLIKR 595
FS+ LP DF Y S KDV I G+LIS + SS + ++ + K
Sbjct: 556 FSLFLPKDFNYVITSKWSKGTKGKPKDVVIKNGELISGVIDKSSIGAEEPESVLHRIAKD 615
Query: 596 YRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
Y + V FL + ++ ++++ G + DL + ++ ++D+I Q+T
Sbjct: 616 YGNAVGKTFLNSILIMVKQFITHYGFSYGYGDLIVPDK--DKQQILDDI-------QETY 666
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
+ + D + TR ++ E AL V+ + A
Sbjct: 667 DIVDDLTDQFNKGTLKL-----TRGMRPEE---------ALEAYIVNELGKARDKAGSTA 712
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
DN+ M G++G+ L + Q + LG Q R + A +
Sbjct: 713 NDCLPADNAGKIMATTGARGSSLNVGQMAGALGQQSRRGN---RLHDGYNNRALTHYQEH 769
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFF 831
DN A ++ S ++ GL+ LE F H++ R+ D A G + RRL+
Sbjct: 770 DNNPDAHGFVKS-----NYREGLSALEFFFHAMGGRE-GLVDTAVRTQQSGYMQRRLINA 823
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
+ + YDGTVR+ +G+ IVQF Y +G + G+
Sbjct: 824 LEHIRLEYDGTVRDPHGH-IVQFLYGEDGIDVQKSDHGE 861
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ GI + + TE K SV EI A + + RLG P +C +CG
Sbjct: 9 IDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTCGNTA 68
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG ++ +LH F+ +I KLL S C C ++
Sbjct: 69 AR-CPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLK 108
>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
Length = 997
Score = 190 bits (482), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 160/590 (27%), Positives = 260/590 (44%), Gaps = 103/590 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P +A+ L E + S+N +L + E
Sbjct: 260 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTSYNIHKLQELVRNGPNEH 319
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R + DGD+++ NR PS+H S+
Sbjct: 320 PGAKYIIRDTG----ERIDLRYHKRAGEIPLQYGWRVERHIVDGDVIIFNRQPSLHKMSM 375
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ+ R E++E+ + +Q+++
Sbjct: 376 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISEICMVPRQIVSP 434
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q + ++ + QD+L A + L+ + + M+ P P I K +W
Sbjct: 435 QGNKPVMGIVQDTLCAIRKFTKRDSFLAQDMVMNILMWVPEWDGTVPMPAIIK--PKPLW 492
Query: 543 SGKQLFSMLLPPDFEYTFPSKD----------VYISGGKLI-SAEGSSWLRDYEGNLFQY 591
SGKQ+ SM++P T +D + I G++I + G L
Sbjct: 493 SGKQILSMVIPRGINITRNDEDQTHNPPDDRGMKIENGEIIYGVVDKKTVGSTPGGLIHI 552
Query: 592 LIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+++ +V F Q V+ W G ++ + D +H +MD I + EA
Sbjct: 553 IMQEKGPEVCKGFFNGVQLVVNYWFLHNGFSIGIGDTIADAH------IMDIIQEKITEA 606
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL----------SYEKQRSAALSQASV 700
+ AK E TR Q L ++E Q AL+ A
Sbjct: 607 R-------------------AKVIEVTRKAQNNTLEPSPGMTLRETFESQVRQALNNARD 647
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
+A + A K + N++ M AGSKG+ + + Q S C+G Q F
Sbjct: 648 EAGRS--------AEKGLKESNNVKQMVSAGSKGSFINISQMSACVGQQAVEGQRIAFGF 699
Query: 758 RF---PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
+F PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 700 KFRTLPHFVR----------------DDYSPESRGFVENSYLRGLTPQEFFFHAMAGREG 743
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQ +Y +G
Sbjct: 744 LIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IVQLAYGEDG 792
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 190 bits (482), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 162/610 (26%), Positives = 273/610 (44%), Gaps = 92/610 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N++++ +
Sbjct: 339 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFQKMMELVHRG 398
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G RID ++ G + R + DGD+V+ NR P++H
Sbjct: 399 NSQYPGAKYIIRENG----ERIDLRFHPKPSDLHIQCGYKVERHIRDGDLVIFNRQPTLH 454
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N C +P++ DFDGD ++ ++PQ++ R E+ L +Q
Sbjct: 455 KMSMMGHRVKVLPWSTF-RMNLSCTTPYNADFDGDEMNLHVPQSMETRAEVEHLHITPRQ 513
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ R ++ + QD+LTA + + V L Q+ + MF P + P I K
Sbjct: 514 IITPQANRPVMGIVQDTLTAVRKMTKRDVFLEKEQVMNILMFLPIWDGKMPKPAIIK--P 571
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQ+FS+++P PD E P + + K++ G
Sbjct: 572 KPMWTGKQIFSLIIPGNVNLIRTHSTHPDEEDEGPYRWISPGDTKVMVEHGELVMGILCK 631
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L +V Y Q V+ WL G ++ + D +
Sbjct: 632 KTLGTSAGSLLHICYLELGHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYV-- 689
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + Q++ +H N + + R ++E Q + L+
Sbjct: 690 ----EIQKAIKKAKE--DVMQVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILND 736
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM AGSKG+ + + Q C+G Q+ P
Sbjct: 737 ARDKT--------GGSAKKSLTEHNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIP 788
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E + H++
Sbjct: 789 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGG 832
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
R+ G + RRL+ M + YDGTVRN+ G Q++QF Y +G E
Sbjct: 833 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQFRYGEDGLCGEMVE 891
Query: 868 IGDQPVGSLS 877
+ P LS
Sbjct: 892 FQNLPTLKLS 901
Score = 42.4 bits (98), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 35 VMEIG--AVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
ME G ++ + +PR G+ + + C +C A + C GHFG I + H FLS
Sbjct: 40 TMEAGRPKINGLMDPRQGVNDRNSRCQTC-AGNMTECPGHFGHIDLVKPVFHIGFLSKTI 98
Query: 93 KLLNSICPKCKTI 105
K+L +C C +
Sbjct: 99 KVLRCVCFYCSKL 111
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 189 bits (481), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 157/573 (27%), Positives = 259/573 (45%), Gaps = 68/573 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L ++G P A L ER+ +N +L + E
Sbjct: 353 LMGKRVDFSARTVITGDPNLDLDQVGCPRSTARILTFPERVTLYNIHKLQELVRNGPNEH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G ++ R+ G RID L+LG I+ R + DGD ++ NR PS+H S+
Sbjct: 413 PGAKHIIREDG----SRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ R E+ L A+ +++
Sbjct: 469 MGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQGHETRAEVANLCAVPHNIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q L+ + QD++ ++ ++ + Q+ + M+ P +P I K S W
Sbjct: 528 QKNGPLMGIVQDTMAGIWMMTRRDTMMDYEQVMNILMWVPGWDGVIPTPAILKPSPR--W 585
Query: 543 SGKQLFSMLLP-----------PDFEYTFPSKDVYISGGKLISAEGSSWLRDYE-GNLFQ 590
+GKQ+ S+ LP D + V I G+L+ + L G +
Sbjct: 586 TGKQIISLGLPLGLNIFRKSEEGDIPLLEKEEPVLIQNGELVWGRFTKKLVGASGGGVVH 645
Query: 591 YLIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
Y+ + D ++F AAQ + C WL G +V + D + KI + Y +
Sbjct: 646 YIFNDKGPDATVEFFNAAQRICCYWLLHHGFSVGIGDT-VPDADLVAKIEEQVVKY---K 701
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
Q ++ +D+ M A + R ++E + AL A A
Sbjct: 702 TQVEEYMSEVQIDN-----MEASPGMTVRE------TFENKTKTALDNARNGA------- 743
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN 769
++AYK + N++ M K+GSKG+ + Q + +G Q SL R P
Sbjct: 744 -GDVAYKGMNACNNVGTMVKSGSKGSTTNVSQMTAAVG-QQSLE--GKRLPFGFKDRVLP 799
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + ++ + VENS+L GL P E F H++ R+ G + RR
Sbjct: 800 HFPKDDYSPASRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 854
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
L+ + ++ YDGTVRN+ G+ I+QF+Y +G
Sbjct: 855 LVKALEEIMIKYDGTVRNSLGD-ILQFTYGEDG 886
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +P+LG + + C++CG + ++ C GHFG I+ + H F++ I K+L S+C C
Sbjct: 53 LNDPKLGTIDRSQMCATCG-ESQQECPGHFGHIELAVPVFHVGFITKIKKILESVCHNC 110
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 189 bits (481), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 159/573 (27%), Positives = 266/573 (46%), Gaps = 70/573 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 256 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPSTY 315
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 316 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 375
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 376 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKP 434
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L Q+Q + ++ P +P I K +W+GKQ+
Sbjct: 435 VMGIVQDTLCGIRKFTLRDTFLDWQQVQNILLWVPEWDGNVPTPAIIK--PKPLWTGKQI 492
Query: 548 FSMLLP--------PDFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLIKRY 596
SM++P P+ + + P D + +G L + +G L + +
Sbjct: 493 ISMVIPRGINIHRAPEPKSSNPLFDDGMMVDNGEILFGIVDKKTVGATQGGLIHVVFREK 552
Query: 597 RDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+ ++ Q V+ WL G ++ + D + +M+ I R +D
Sbjct: 553 GPEATRSVFTGIQMVVNFWLFHNGFSIGIGDTIAGPN------VMEFI---TRRIKDKKQ 603
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
+++ N + + R S+E + L++A D+ ++ A
Sbjct: 604 QVAEIIEDAYNDRLKPMPGMTIRE------SFESKVERELNRARDDSGQY--------AQ 649
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCAAWN 769
K +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 650 KNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPH-------- 701
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + A+ + VENS+L GL P E F H++ R+ G + RR
Sbjct: 702 -FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 755
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
L+ + D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 756 LVKALEDVMVCYDGTVRNSLGD-LVQFIYGEDG 787
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 189 bits (481), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 167/635 (26%), Positives = 279/635 (43%), Gaps = 94/635 (14%)
Query: 271 SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRW--------IKDVVLGKRN 322
+H++ + ++ + H+ D A + Q LR ++ ++GKR
Sbjct: 292 AHVISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRV 351
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKGELYV 381
D R V+TGDPN++L E+G+P +A L ER+ +N L + + G YV
Sbjct: 352 DFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELVRNGPTTYPGARYV 411
Query: 382 CRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V+++P S
Sbjct: 412 VRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYS 471
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ + ++ + Q
Sbjct: 472 T-FRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIVQ 530
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+L L +Q + ++ P +P I K +W+GKQ+ SM +P
Sbjct: 531 DTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILK--PKPLWTGKQILSMTIP 588
Query: 554 --------PDFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRDKVLD 602
PD + + P D + I G+LI + +G L + + +V
Sbjct: 589 RGINIHRSPDPKSSNPVFDDGMLIENGELIFGIVDKKTVGATQGGLVHVVFREKGPEVTR 648
Query: 603 FLYAA-QEVLCEWLSVRGMTVSLSDL--------YLASHSCSRKILMDEIFYGLREAQDT 653
L+ Q V+ WL G ++ + D Y+ RK + +I +
Sbjct: 649 QLFTGLQRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKII-------ED 701
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
+L M ES S+ L+ + S +Q
Sbjct: 702 ATHDRLKPKPGMTI------RESFESMVERQLNLARDTSGQYAQ---------------- 739
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCAA 767
K+ +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 740 --KHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPH------ 791
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D T ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 792 ---FTKDDFTPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 843
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 844 RRLVKALEDVMVCYDGTVRNSLGD-LIQFVYGEDG 877
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA----VSEVTNPRLGLPNPTNECSSCGAKDR 66
EV GIL+ + ++ + E VM+ + + +PR+G + +C +CG +
Sbjct: 18 EVQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCG-EGM 76
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + HP F+ + K+L IC C ++ +
Sbjct: 77 SECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKAD 118
>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
Length = 872
Score = 189 bits (481), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 157/570 (27%), Positives = 268/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P + P I +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVIPPPAVIKPKPMWTG 387
Query: 545 KQLFSMLLPPDFEY--------TFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDGGKDMLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ V L++ Q+V+ WL G ++ + D +A S R ++ ++EA+D
Sbjct: 448 REKGPYVCAQLFSRIQKVVNYWLLHNGFSIGIGDT-IADASTMR-----DVTTTIQEAKD 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++++ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILEAQQNTL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P S +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSDRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-VIQFVYGEDG 685
>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium
curvatum]
Length = 1002
Score = 189 bits (481), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 157/581 (27%), Positives = 266/581 (45%), Gaps = 72/581 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+TGDPNI + E+G+P +A L E + N RL +
Sbjct: 259 IRGNLMGKRVDFSSRTVITGDPNISIDEVGVPRSIARTLTFPEIVTPHNVARLQELVRNG 318
Query: 373 LLE-KGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
LE G Y+ R+ G V L++GD + R L DGD V+ NR PS+H S+
Sbjct: 319 ALEHPGANYIVRQSGDRISLKFVPQAGDQPLQIGDTVERHLQDGDYVIFNRQPSLHKMSM 378
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VK++P S+ +N +P++ DFDGD ++ + PQ+ R E+ E++ + +Q+I+
Sbjct: 379 MGHRVKIMPFST-FRLNLSVTTPYNADFDGDEMNLHAPQSYETRAEIKEIMMVPRQIISP 437
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSG 544
Q+ + ++ + QD+ +++ + + M+ P P I K +W+G
Sbjct: 438 QANKPVMGIVQDTFCGIRKFTLRDNMMTRDMVMNICMWIPDWDGQPPPPAILKPQPLWTG 497
Query: 545 KQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAEGSS-WLRDYEGNL 588
KQL SM++P PD E S V I G +++ S + + G +
Sbjct: 498 KQLMSMVIPSRINVTGKHSTHPDDERDNISPGDTQVVIEDGVVLAGILSKRTVGNSAGGI 557
Query: 589 FQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
++ Y ++ F Q V+ WL G ++ + D + + K M +I L
Sbjct: 558 IHVIMNEYGPEMAKKFFNGTQRVVNYWLLQNGFSIGIGD------TVADKATMHQINQIL 611
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
+ A++ + + + N L + + R ++E + L++A DA K
Sbjct: 612 KRAKEDVG--ETIARAQQNQL-EPQPGMTIRE------TFESVVNKILNKAREDAGK--- 659
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
A K + N+ M AGSKG+ + + Q + C+G Q+ P FR PH
Sbjct: 660 -----AATKSLAPFNNAKQMVDAGSKGSEINISQMAACVGQQNVEGKRIPFGFRLRTLPH 714
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 715 ---------FTKDDQSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTA 760
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ ++QF+Y +G
Sbjct: 761 ETGYIQRRLVKALEDVMVKYDGTVRNSLGH-VIQFAYGEDG 800
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 189 bits (481), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 167/635 (26%), Positives = 279/635 (43%), Gaps = 94/635 (14%)
Query: 271 SHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRW--------IKDVVLGKRN 322
+H++ + ++ + H+ D A + Q LR ++ ++GKR
Sbjct: 292 AHVISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRV 351
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKGELYV 381
D R V+TGDPN++L E+G+P +A L ER+ +N L + + G YV
Sbjct: 352 DFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELVRNGPTTYPGARYV 411
Query: 382 CRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V+++P S
Sbjct: 412 VRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYS 471
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ + ++ + Q
Sbjct: 472 T-FRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIVQ 530
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+L L +Q + ++ P +P I K +W+GKQ+ SM +P
Sbjct: 531 DTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILK--PKPLWTGKQILSMTIP 588
Query: 554 --------PDFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRDKVLD 602
PD + + P D + I G+LI + +G L + + +V
Sbjct: 589 RGINIHRSPDPKSSNPVFDDGMLIENGELIFGIVDKKTVGATQGGLVHVVFREKGPEVTR 648
Query: 603 FLYAA-QEVLCEWLSVRGMTVSLSDL--------YLASHSCSRKILMDEIFYGLREAQDT 653
L+ Q V+ WL G ++ + D Y+ RK + +I +
Sbjct: 649 QLFTGLQRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKII-------ED 701
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
+L M ES S+ L+ + S +Q
Sbjct: 702 ATHDRLKPKPGMTI------RESFESMVERQLNLARDTSGQYAQ---------------- 739
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCAA 767
K+ +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 740 --KHLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPH------ 791
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D T ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 792 ---FTKDDFTPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 843
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 844 RRLVKALEDVMVCYDGTVRNSLGD-LIQFVYGEDG 877
Score = 50.1 bits (118), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA----VSEVTNPRLGLPNPTNECSSCGAKDR 66
EV GIL+ + ++ + E VM+ + + +PR+G + +C +CG +
Sbjct: 18 EVQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCG-EGM 76
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + HP F+ + K+L IC C ++ +
Sbjct: 77 SECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKAD 118
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 189 bits (481), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 170/639 (26%), Positives = 290/639 (45%), Gaps = 78/639 (12%)
Query: 266 RDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRW--------IKDVV 317
R E SH+++ ++ + HL + + Q + LR I+ +
Sbjct: 287 RKGEPSHIIEQFEQLLQFHLATFINNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNL 346
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-K 376
+GKR D R V+T DPN+++ ++G+P +A L + ER+ +N + IS LE
Sbjct: 347 MGKRVDFSARTVITADPNLEIDQVGVPLSIAMNLTVPERVTPFNMAAMHQLISNGPLEHP 406
Query: 377 GELYVCRK-GGLVRIRRID-----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G Y+ R+ G + +R I AL+ G I+ R L D D+VL NR PS+H S+++ V
Sbjct: 407 GAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDEDLVLFNRQPSLHKMSIMSHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KV S+ +N SP++ DFDGD ++ ++PQ++ AR E EL+ + K +I QS R
Sbjct: 467 KVFHWSTF-RLNLSVTSPYNADFDGDEMNLHVPQSLTARAEAQELMMVHKVIITPQSNRP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDS------V 541
++ + QDSL + + + + L M+ + R +P I K +
Sbjct: 526 VMGIVQDSLLGVQKFTKRDIFIEKDVVMNLLMWVFNWDGRIPTPAILVPKKGEIGKYRPI 585
Query: 542 WSGKQLFSMLLP----PDFEYTFPSKD-----------VYISGGKLISA--EGSSWLRDY 584
W+GKQ+FS ++P F T SK+ V + G+L++ + +
Sbjct: 586 WTGKQMFSQVIPDINFTGFSSTHSSKESFAKLSPIDSRVIVQRGELLAGIIDKKTIGSSA 645
Query: 585 EGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G + ++++ ++ FL A Q+++ WL R TV +SD + + K ++D I
Sbjct: 646 GGLIHTTMLEKGPEEAKYFLGAVQKLVNNWLVGRSFTVGVSDAI--ADVSTLKTIVDIIT 703
Query: 645 YGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
+ D Q+ +++ M ES L + L+ + ++ +Q S+D
Sbjct: 704 QAKVQVHDLVQRGQKGKLETQPGRTM----VESFEQLVNKVLNTARDQAGREAQGSLD-- 757
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+ N++ A +GSKG+ + + Q C+G Q+ R P+
Sbjct: 758 ----------------ETNNIKATVTSGSKGSFINISQIIACVGQQNVEGK---RIPYGF 798
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D ++ + VENS+L GL P E F H++ R+
Sbjct: 799 QHRTLPHYGKDDLGPESRGF-----VENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAET 853
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRNA G +I+QF Y +G
Sbjct: 854 GYIQRRLVKAMESVMARYDGTVRNAQG-EIIQFLYGEDG 891
>gi|340502584|gb|EGR29261.1| RNA polymerase domain 2 family protein [Ichthyophthirius
multifiliis]
Length = 1496
Score = 189 bits (481), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 235/914 (25%), Positives = 382/914 (41%), Gaps = 139/914 (15%)
Query: 26 TDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHP 85
T+ E K + S + +PR+G+ +C +C + C GHFG IK I H
Sbjct: 35 TNAEIYKYESFQREQESGINDPRMGVQLFKEKCKTCSQNNE--CPGHFGRIKLERKIYHI 92
Query: 86 YFLSDIAKLLNSICPKCKTIRK----ERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFK 141
F++ I ++L IC KC T+RK E + G + E + KY P + +
Sbjct: 93 NFITTIKQILLCICHKCGTLRKPSIKEDENGNPRNDGEVSKKVKY---QQILQIPNSKKR 149
Query: 142 LSS-KDLSGKTAIIVEID--EKLSKK---NKKLPDDYWGFIPFDAQQEENSVKPNRKVLS 195
LS + GK I EKL K K L W + Q ++S++ + S
Sbjct: 150 LSELYKMLGKVNQCSSIGCLEKLYTKITIEKYLELWLWK----KSDQSKSSIESQKTQWS 205
Query: 196 CKQVSYLLKDVDPSI--------------REEFILSKDAPFLKCFPVTPNNHRVTEVPHA 241
++ +LK + E F+ KD + F P E+
Sbjct: 206 AEETYNILKKIPKQTAIDLLHNKENKKFKSEYFLHPKDLILSRIFVPPPQVRPFIELQST 265
Query: 242 FSHEKKLFFDNWTRHLKKMVDY-----RGRDIELSH--LVQDCLKISKLHLDKSSRKDSA 294
F + D T+ +K+V +G E H L+Q+ ++++ ++ + S
Sbjct: 266 FVCQ-----DEMTKCYQKIVKLNQEIKQGNVNEKEHVELIQNI--VARMIDNQKPKLPSL 318
Query: 295 EVRQK--KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQ 352
+++ K K+ S + ++GKR D R V++ D N+ L E+G+P +A+ L
Sbjct: 319 KIKTKTIKSFSQRLSGKEGRFRQNLMGKRVDFSARTVISPDANLALDELGVPRSIADTLT 378
Query: 353 ISERLNSWNWERLSVCISFRLLEKGEL-YVCRKGGLVRI------------RRI--DALE 397
+ E +N N + +L G++ YV + + +I R I + +
Sbjct: 379 VPEIVNQQNINMIK-----QLWNDGKIKYVMKPNKIKQIYEGFDAIISNSARNIIEEHIN 433
Query: 398 LGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDC 457
G II R L DGD VL NR P++H S++ VK+LP S+ +N C+P++ DFDGD
Sbjct: 434 DGVIIERTLQDGDFVLFNRQPTLHKMSMMGHKVKILPWSTF-RLNLSVCTPYNADFDGDE 492
Query: 458 LHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQM 517
++ ++PQ+ R E+ + + +Q+I +S + ++ L QDSL L + +
Sbjct: 493 MNLHVPQSYETRAEIKHVCHVPRQIITPKSNKPVMGLVQDSLLGISLFTLRDCFVKRKNL 552
Query: 518 QQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPS 562
L M+ + P I K K +WSGKQ+ SML+P D E F
Sbjct: 553 FNLIMWIDNWEGEIPMPAILKPEK--LWSGKQVISMLIPNRISMMKIGGKNSDDERWFSI 610
Query: 563 KD--VYISGGKLISAEGS-SWLRDYEGNLFQYL-IKRYRDKVLDFLYAAQEVLCEWLSVR 618
KD +YI G+L+ + + + D G L + + DF+ +Q ++ WL ++
Sbjct: 611 KDDSIYIYKGELLQGYMTKAIVGDSPGGLVHLIWLDIGTQATCDFITRSQRIINNWLIMQ 670
Query: 619 GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
G T+S D+ + S C ++ M++I + Q F+ + D AK E
Sbjct: 671 GHTISCQDI-VPSEICQKE--MEKI-----KGQAFIAFENALND-----FQDAKKIEDM- 716
Query: 679 SLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD---------NSLLAMFK 729
G H S + D+F+ I N K N M
Sbjct: 717 ---GLHKS---------GKRIFDSFEVYINSILNKLRGIAEKKCRETTNFRLNQFNKMVW 764
Query: 730 AGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVV 789
AGSKG L Q +G Q+ R + DN A+ +I S
Sbjct: 765 AGSKGKPTNLAQVMGFVGQQNIEGA---RIGNGFIRRTLPHFTKDDNGILARGFITS--- 818
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNA 846
+F GL P E F H + R+ SD A G + R+L+ + D+ YDGTVR++
Sbjct: 819 --NFFQGLRPFEFFFHMMGGRE-GLSDTAVKTSRTGYIQRKLIKALEDVIVKYDGTVRDS 875
Query: 847 YGNQIVQFSYNIEG 860
G I+Q SY +G
Sbjct: 876 NGT-IIQTSYGEDG 888
>gi|342180836|emb|CCC90312.1| putative RNA polymerase IIA largest subunit [Trypanosoma congolense
IL3000]
Length = 1756
Score = 189 bits (481), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 157/574 (27%), Positives = 268/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFVR-REVYP 406
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GDI+ R + +GD+VL NR P++H S++ V
Sbjct: 407 SANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHVINGDVVLFNRQPTLHRMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 467 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P + K +W+GKQ+FS
Sbjct: 526 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAVLK--PRPLWTGKQVFS 583
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYE-GNLFQYLI-KRYRD 598
++LP P + FP D V I G+L+ + + G+L + ++ D
Sbjct: 584 LILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLIHVIFNEQGSD 643
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q V +L G +V + D + + + M+E+ RE +
Sbjct: 644 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQ---MNEVLVKTRENVEKIGAAA 700
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N + L + M L S+E ++AL++ +A K +++
Sbjct: 701 NNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 741
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 742 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 789
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 790 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 842
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA +++QF Y +G
Sbjct: 843 KLIKALEDVHAAYDGTVRNA-NEELIQFMYGEDG 875
>gi|212223364|ref|YP_002306600.1| DNA-directed RNA polymerase subunit A' [Thermococcus onnurineus
NA1]
gi|212008321|gb|ACJ15703.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 905
Score = 189 bits (481), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 168/601 (27%), Positives = 277/601 (46%), Gaps = 102/601 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DP I + E+G+P VA L + E++ +N+E+L + EK
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIAVAMELTVPEKVTEFNYEKLKKMV-LNGPEKYP 379
Query: 377 GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G YV G RIR ++ L++G + R L DGDIVL NR PS+H S++A
Sbjct: 380 GANYVIDPEGR-RIRLMENNLEIIAEKLDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAH 438
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 439 RVRVMPYKTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYG 497
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKD-------SV 541
L++ QD ++ +LL + + +++Q+ MF D+ K+ K +
Sbjct: 498 GPLIAGIQDHISGGYLLTREGAYFTRSEVEQMLMFA-----GVDVDKLPKPDKVENGVEL 552
Query: 542 WSGKQLFSMLLPPDF-----------------------EYTFPSKD----------VYIS 568
WSGK +FS+LLP D E P ++ YI
Sbjct: 553 WSGKTIFSLLLPEDLTIWYRNKLCDDPERCEALEKLIEEKLIPDEEEVRKLAYDGFTYIL 612
Query: 569 GGKLISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLS 625
GKL+S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T ++
Sbjct: 613 NGKLLSGVVDKKAYGRE-DGKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAID 671
Query: 626 DLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
D L + + R + EI +REA++ +N L+ A + L G+ L
Sbjct: 672 DEDLPTEALDR---IKEI---IREAEE-----------RVNRLIEAYKNGELEPLPGKTL 714
Query: 686 --SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHS 743
+ E A L++A +A K +A KY N + M K G++G +L + Q +
Sbjct: 715 EETLESNIMAVLAEARDNAGK--------VAEKYLGMTNHAVIMAKTGARGKMLNITQMA 766
Query: 744 LCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECF 803
LG Q +R E R GD A+ + V NS+ +GL P E F
Sbjct: 767 AMLGQQSIRGKRLYRGYRE---RVLTHFRPGDLGARARGF-----VVNSYKSGLTPQEYF 818
Query: 804 IHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
H++ R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 819 FHAMGGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFKYGEDG 876
Query: 861 T 861
Sbjct: 877 V 877
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
C GHFG ++ I+H F I ++L S C +C I+
Sbjct: 67 -AGDCPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIK 107
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 189 bits (481), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 162/586 (27%), Positives = 269/586 (45%), Gaps = 79/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 347 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 406
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 407 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 466
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 467 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 525
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ Q+ R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 526 VSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILK--PR 583
Query: 540 SVWSGKQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISAE-GSSWLRD 583
+W+GKQ+F++++P + E F + V I G+L+S L
Sbjct: 584 PIWTGKQVFNLIIPKLINLIRFSAWHAESESGFITPGDTMVRIEKGELLSGTLCKKTLGT 643
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI---- 638
G+L + + D FL Q ++ WL G ++ + D +A S KI
Sbjct: 644 GTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDT-IADASTMEKINETI 702
Query: 639 --LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
E+ +++AQD +L+ + E R++ S+E + + L+
Sbjct: 703 SKAKSEVTELIKQAQD-----KLL------------EPEPGRTMME---SFENRVNQVLN 742
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
+A DA A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 743 KARDDAGSS--------AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK-- 792
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P D ++ + VENS+L GL P E F H++ R+
Sbjct: 793 -RIPFGFVDRTLPHFTKNDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDT 846
Query: 817 NADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 847 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 891
Score = 43.5 bits (101), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1339 CHED---VDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDT 1395
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1396 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIM 1450
Query: 1245 WGKVPSVGTGG 1255
G++ +GTGG
Sbjct: 1451 LGQLAPIGTGG 1461
>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
Length = 872
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 267/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIHRLTQLVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R + DGD VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHIDDGDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L + Q+I+
Sbjct: 269 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIISP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L L + + Q+ + + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKLTKRDTFVEFDQVMNILFWIPDWDGVVPQPAILKPKPLWTG 387
Query: 545 KQLFSMLLPPD-FEYTFPSKD---------VYISGGKLI-SAEGSSWLRDYEGNLFQYLI 593
KQ+ S+ +P F F ++ + I+ G++I + G L ++
Sbjct: 388 KQMVSLCIPKGIFMQRFDDQNPITSPKDNGMLIAKGEIIYGVVDKKTVGATAGGLIHTIM 447
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ ++ +F Q+V+ WL G ++ + D + + M +I + EA++
Sbjct: 448 REKGPQICCNFFGNLQKVINYWLLHNGFSIGIGD------TIADAATMKDITNTIAEAKN 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q+++ ++ MN L E +L+ S+E S L+QA A + ++
Sbjct: 502 KV--QEIIFEAQMNKLA----PEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKE 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M AGSKG+ + + Q S C+G Q R P +
Sbjct: 553 L--------NNVKQMVIAGSKGSFINISQMSACVGQQIVEGK---RIPFGFQDRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D++ +K +I ENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDHSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 657 ALEDVMVQYDGTTRNSLGD-VIQFVYGEDG 685
>gi|57641017|ref|YP_183495.1| DNA-directed RNA polymerase subunit A' [Thermococcus kodakarensis
KOD1]
gi|57159341|dbj|BAD85271.1| DNA-directed RNA polymerase, subunit A' [Thermococcus kodakarensis
KOD1]
Length = 906
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 163/597 (27%), Positives = 277/597 (46%), Gaps = 94/597 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DP I + E+G+P VA L + E++ +N+E+L + EK
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRV-LNGPEKYP 379
Query: 377 GELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G YV G RIR +++ L++G + R L DGD+VL NR PS+H S++A
Sbjct: 380 GANYVIDPEGR-RIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAH 438
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 439 RVRVMPYRTF-RLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYG 497
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGK 545
L++ QD ++ +LL + + +++Q+ MF + PD ++ + + +WSGK
Sbjct: 498 GPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYE-NGEPLWSGK 556
Query: 546 QLFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKL 572
+FS+LLP D E P + VYI GKL
Sbjct: 557 TIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKL 616
Query: 573 ISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
+S + ++ R+ +G L +++ Y ++ FL ++ ++ +G T ++ D L
Sbjct: 617 LSGAVDKKAYGRE-DGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDL 675
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SY 687
+ +D I +REA++ + L+ A L G+ L +
Sbjct: 676 PQEA------IDRIHEIIREAEEK-----------VQRLIEAYKRGELEPLPGKTLEETL 718
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E + A L++A +A K +A +Y +N + M K G++G +L + Q + LG
Sbjct: 719 ESKIMAVLAEARDNAGK--------VAERYLGMNNHAVIMAKTGARGKILNITQMAAMLG 770
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q +R + GD A+ + V NS+ +GL P E F H++
Sbjct: 771 QQSIRGKRLYRG---YRGRVLTHFKPGDLGARARGF-----VTNSYKSGLTPQEYFFHAM 822
Query: 808 TSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 823 GGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFKYGEDGV 877
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIK 107
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 157/574 (27%), Positives = 269/574 (46%), Gaps = 72/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N + L+ + E
Sbjct: 353 LMGKRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTRYNIQYLTELVRRGPQEY 412
Query: 376 KGELYVCRKGG----LVRIRRIDAL-ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R D+L + G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 413 PGARYVIRDTGERIDLKYNKRSDSLLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRV 472
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+++ Q+ +
Sbjct: 473 KIMPYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKP 531
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR---FLSPDIFKISKDSVWSGKQL 547
++ + QD+L + +Q+Q L ++ P +P I K +W+GKQL
Sbjct: 532 VMGIVQDTLCGIRKFTLRDTFVDWIQVQNLLLWLPGWDGIVPTPTILK--PKPLWTGKQL 589
Query: 548 FSMLLP--------PDFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRY 596
SM +P P+ P D + I G++I + +G L + +
Sbjct: 590 LSMCIPRGINVLRLPESRSHNPPADDGMMIENGEIIFGVVDKKTVGATQGGLVHVVFREK 649
Query: 597 RDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
++ D Q ++ WL G ++ + D I ++ G+ EA +
Sbjct: 650 GPEICRDLFSGLQMIVNFWLFHNGFSIGIGD----------TIADNQTMQGVSEAILSAK 699
Query: 656 FQ-QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
+ Q +++ N + A+ + R S+E + L++A A K +A
Sbjct: 700 QKVQKLIEDASNDRLKAEPGMTIRE------SFESHVNMHLNKARDTAGK--------MA 745
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ N++ M AGSKG+ + + Q S+ +G Q P FR PH
Sbjct: 746 QESLKDSNNVKQMVVAGSKGSFINIAQMSVAVGQQSVEGKRIPFGFRHRSLPH------- 798
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + ++ + VENS+L GL P E F H++ R+ G + R
Sbjct: 799 --FTKDDFSPESRGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAIKTAETGYIQR 851
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGTVRN+ G+ I+QF+Y +G
Sbjct: 852 RLVKALEDVMVCYDGTVRNSLGD-ILQFTYGEDG 884
Score = 48.1 bits (113), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PR+G + +C++CG + C GHFG I+ + H FL + K+L SIC C
Sbjct: 54 LADPRMGTIDRNFKCATCG-EGMAECPGHFGHIELARPVFHIGFLGKVKKILESICVNCG 112
Query: 104 TIR 106
++
Sbjct: 113 KLK 115
>gi|308800888|ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116061779|emb|CAL52497.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1406
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 163/578 (28%), Positives = 256/578 (44%), Gaps = 69/578 (11%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-G 377
GKR D R V++ DPN+ + E+GIP +A+ + E +N N L + + E G
Sbjct: 373 GKRVDFSARTVISPDPNLGIDEVGIPIYIAKTMTYPEVVNRHNIAMLRERVRNGMAEHPG 432
Query: 378 ELYV-CRKGGLVRIRRID------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+V GG+ ++ D L GDI+ R L DGDI+L NR PS+H S++A
Sbjct: 433 ANFVKFASGGMQYLKYGDRRKIASELRFGDIVERHLHDGDILLFNRQPSLHKMSIMAHKA 492
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+V+P ++ +N C+P++ DFDGD ++ + PQ AR E +L+ + L ++G
Sbjct: 493 RVMPCRTL-RLNECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVHHNLCTPKNGEI 551
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGKQL 547
L++ QD LTAA LL V Q+ QL + LS D+ + +W+GKQ+
Sbjct: 552 LVAATQDFLTAAFLLTAKDVFFDRSQVGQLVAYMGDALLSVDLPTPAIVKPIEMWTGKQI 611
Query: 548 FSMLLPPD-----------FEYTFPSKD---------VYISGGKLISAE-GSSWLRDYEG 586
F ML+ P E + KD V I ++++ G + L
Sbjct: 612 FGMLIRPKASDQIFVNLEVAEKLYNKKDKTMCPDDGYVCIQNSEIMAGRLGKATLGSGNK 671
Query: 587 NLFQYLIKRYRDKV--LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
N Y++ V D + ++ WL RG ++ + D+ A+ + K E
Sbjct: 672 NGLFYVLNIEYGPVAAADAMNRLAKLSARWLGTRGFSIGIDDVSPAAELEAEKQRRIEDG 731
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
Y TC+ + + L + ++E T L+ E L A A + A
Sbjct: 732 YA------TCDQRIASYEKGTLPLQAGCNAEET--LEAEVLGVLSSVREAAGNACLQAL- 782
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
+ N+ L M GSKG+ + + Q C+G Q A R P +
Sbjct: 783 --------------PRHNAPLIMALCGSKGSTINISQMVACVGQQ---AVSGSRPPDGFA 825
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
+ + G+ T AK + V NSF +G+ P E F H++ R+ G
Sbjct: 826 HRSLPHFKRGEKTPAAKGF-----VANSFYSGMRPTEFFFHTMAGREGLVDTAVKTAETG 880
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++RRLM + DL +YDGTVRN+ G IVQ Y +G
Sbjct: 881 YMSRRLMKALEDLSLSYDGTVRNSMGG-IVQLRYGDDG 917
Score = 43.9 bits (102), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 41 VSEVTNPRLGLPNPTN-ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC 99
V+ + +PR+G + EC++C C GHFG+IK + H + +I +L +C
Sbjct: 71 VNGILDPRMGTTDKRGGECATCRGS-MVDCAGHFGYIKLELPVFHIGYFKNIISVLQCVC 129
Query: 100 PKCKTI 105
C I
Sbjct: 130 KGCSRI 135
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/595 (26%), Positives = 270/595 (45%), Gaps = 96/595 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ + E + +N ++L ++
Sbjct: 342 IRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRG 401
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 402 DSQYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLH 457
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N +P++ DFDGD ++ ++PQ++ + E++E+ + +Q
Sbjct: 458 KMSMMGHKVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQ 516
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
LI Q+ + ++ + QD+LTA ++ + V + +M L M P+ + P I K
Sbjct: 517 LITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILK--P 574
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEG--------S 578
+W+GKQ+F++++P PD E P K + K+I G S
Sbjct: 575 KPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICS 634
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ GNL + +V Y+ Q V+ WL G T+ + D
Sbjct: 635 RTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLVAEGHTIGIGD----------- 683
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ D+ Y R+ Q+T +L V + + A + E E L Q
Sbjct: 684 TIADQATY--RDIQETIRKAKLDV---VEVIEKAHNDE-----------LEPTPGNTLRQ 727
Query: 698 ASVDAFKHVFWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
+ + D ++ A + S+ N+ AM AGSKG+ + + Q C+G Q+
Sbjct: 728 TFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEG 787
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
P FR PH + D +K + VENS+L GL P E F H++
Sbjct: 788 KRIPFGFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTPSEFFFHAM 833
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + +YDGTVRN+ G Q+VQ Y +G
Sbjct: 834 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLG-QLVQLRYGEDG 887
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEV-----------TNPRLGLPNPTNECSSCGAKDRKA 68
+ GI + E +++S+ EI SE+ +PR G+ + C +C A
Sbjct: 18 VQFGILSPDEIKRMSIGEI-EFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTC-AGSLAD 75
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKER---------QKGAGSSRKE 119
C GHF I+ + H FLS KLL +C C + ++ +K AG++R+
Sbjct: 76 CPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLKKTAGNARRR 135
Query: 120 QPRVCKYC 127
+ + C
Sbjct: 136 LTVIYEIC 143
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 270/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + ++G+P +A L E + +N ERL + +
Sbjct: 364 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 423
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 424 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 479
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 480 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 538
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ Q+ R ++ + QDSL + + +S + M+ + +P I K
Sbjct: 539 PKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPTILK 598
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+ +W+GKQ+F++++P T V I G+L++
Sbjct: 599 --PEPLWTGKQVFNLIIPKQINLIRYSSWHNENERGPITPGDTMVRIEKGELLTGTLCKK 656
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL + ++ + D + +
Sbjct: 657 TLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAST----- 711
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M+ I + +A+D +QL+ ++ L ++E R++ S+E + + L++A
Sbjct: 712 -METINQTISQAKD--KVKQLIREAQEKKL----EAEPGRTMMD---SFENRVNQTLNRA 761
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA N A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 762 RDDA--------GNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 810
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D ++ + VENS+L GL P E F H++ R+
Sbjct: 811 IPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 865
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 866 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 908
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFP 79
I G +T+ K K IG +S +PRLG + +C +C A C GHFG+++
Sbjct: 42 IEHGETTERGKPK-----IGGLS---DPRLGTIDRKMKCETCTAS-MAECPGHFGYLELA 92
Query: 80 FTILHPYFLSDIAKLLNSICPKCKTI 105
+ H FL + ++ +C C I
Sbjct: 93 KPMFHIGFLKTVLSIMRCVCFNCSKI 118
Score = 42.0 bits (97), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D T +H + GI+A + L L IS G + HL I+ +T
Sbjct: 1356 CHEDVDAKRTTSNH---LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDT 1412
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D+L+G + +
Sbjct: 1413 MTYRGHLMAITRHGI-----NRNETGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIM 1467
Query: 1245 WGKVPSVGTG 1254
G++ +GTG
Sbjct: 1468 LGQLAPIGTG 1477
>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
Length = 868
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 165/572 (28%), Positives = 271/572 (47%), Gaps = 67/572 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIQKLTELVRNGPNEH 212
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P SS +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++
Sbjct: 269 MAHRVKVMPYSSF-RMNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + + Q+ + + P+ R P I+K +W
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMSKRDSFIDYEQVMNILFWVPNWDGRIPPPAIWK--PKPMW 385
Query: 543 SGKQLFSMLLPPD-FEYTFPSKDVYIS---GGKLIS-AEGSSWLRDYE------GNLFQY 591
+GKQ+ S+ +P F F + IS G LIS E + D + G L
Sbjct: 386 TGKQMVSLCIPDGIFLQRFDDGNPLISPKDNGMLISRGEIIYGVVDKKTVGATGGGLIHT 445
Query: 592 LIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+++ KV F Q+V+ WL G ++ + D +A S R +I + EA
Sbjct: 446 IMREKGPKVAAGFFGNIQKVVNYWLLHNGFSIGIGDT-IADGSTMR-----DIANTIAEA 499
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+ Q ++ D+ N L S + + R S+E S L+QA +A + +
Sbjct: 500 KQKV--QDIIADAQNNTL-SPEPGMTLRE------SFEHNVSRVLNQARDNAGRSAELSL 550
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
++L N++ M +GSKG+ + + Q C+G Q R P + +
Sbjct: 551 KDL--------NNVKQMVVSGSKGSFINISQMMACVGQQIVEGK---RIPFGFADRSLPH 599
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D + +K + VENS+L GL P E F H++ R+ G + RRL
Sbjct: 600 FTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 654
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 655 VKALEDIMVQYDGTTRNSLGD-VIQFIYGEDG 685
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 158/580 (27%), Positives = 269/580 (46%), Gaps = 84/580 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 350 LMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTTY 409
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 410 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 469
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 470 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKP 528
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L + Q+Q + ++ P P IFK +W+GKQ+
Sbjct: 529 VMGIVQDTLCGIRKFTLRDTFMEWNQVQNILLWVPDWDGNVPPPAIFK--PKPLWTGKQI 586
Query: 548 FSMLLP----------PDFEYTFPSKDVYISGGKLI------SAEGSSWLRDYEGNLFQY 591
SM++P P + I G++I G+S +G L
Sbjct: 587 LSMVIPRGINIQRAAEPKSSNPVFDDGILIENGEIIYGIVEKKTVGAS-----QGGLIHV 641
Query: 592 LIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ + + + D Q V+ WL G ++ + D + + + G ++
Sbjct: 642 VFREKGPEATRDLFTGIQVVVNYWLFHNGFSIGIGDTVAGPKVMTH---ITNVIQGKKKL 698
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFW 708
+++ D++ + L ++L G + S+E + L++A ++ ++
Sbjct: 699 -----VSEIVEDAYHDRL---------KALPGMTIRESFESKVERELNRARDESGQY--- 741
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHE 762
A K S DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 742 -----AQKNLSDDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGKRIPFGFRHRTLPH- 795
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 796 --------FTKDDFSPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 842
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 843 TGYIQRRLVKALEDVMVHYDGTVRNSLGD-LLQFVYGEDG 881
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G + +C +CG + C GHFG I+ + HP F++ + K+L IC C +
Sbjct: 57 DPRMGTIDRNFKCQTCG-EGMSECPGHFGHIELARPVFHPGFINKVKKILECICVNCGKL 115
Query: 106 RKE 108
+ +
Sbjct: 116 KAD 118
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1748
Score = 189 bits (480), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/575 (27%), Positives = 271/575 (47%), Gaps = 73/575 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N RL+ + E
Sbjct: 348 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEH 407
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 408 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 463
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+I+
Sbjct: 464 MCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIISP 522
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + Q+ + + P+ + P + +W+G
Sbjct: 523 QSNKPVMGIVQDTLCGIRKMTLRDTYIEFDQVMNMCYWIPNWDGVIPPPAIVKPKPLWTG 582
Query: 545 KQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWL-RDYE---------------GNL 588
KQL SM +P + G L+SA+ + L D E G L
Sbjct: 583 KQLLSMAIPKGIHL-----QRFDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGL 637
Query: 589 FQYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+++ +V L+++ Q+V+ WL G ++ + D + + M +I +
Sbjct: 638 IHTVMREKGPQVCAQLFSSIQKVVNYWLLHNGFSIGIGDTIADAST------MKDITTTI 691
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
+EA+ Q++++D+ N L + E +L+ S+E S L+QA A +
Sbjct: 692 QEAK--TKVQEIILDAQQNRL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAE 742
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
++++L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 743 MNLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRS 791
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + +K + VENS+L GL P E F H++ R+ G +
Sbjct: 792 LPHFTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 846
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 847 RRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 880
Score = 44.7 bits (104), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + C +CG +D C GHFG I + H F++ I K+ +C C
Sbjct: 54 LNDPRLGSIDRNFRCQTCG-EDMAECPGHFGHIDLAKPVFHIGFIAKIKKVCECVCMHC 111
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/595 (26%), Positives = 270/595 (45%), Gaps = 96/595 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ + E + +N ++L ++
Sbjct: 342 IRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRG 401
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 402 DSQYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLH 457
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N +P++ DFDGD ++ ++PQ++ + E++E+ + +Q
Sbjct: 458 KMSMMGHKVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQ 516
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
LI Q+ + ++ + QD+LTA ++ + V + +M L M P+ + P I K
Sbjct: 517 LITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILK--P 574
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEG--------S 578
+W+GKQ+F++++P PD E P K + K+I G S
Sbjct: 575 KPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICS 634
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ GNL + +V Y+ Q V+ WL G T+ + D
Sbjct: 635 RTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLVAEGHTIGIGD----------- 683
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ D+ Y R+ Q+T +L V + + A + E E L Q
Sbjct: 684 TIADQATY--RDIQETIRKAKLDV---VEVIEKAHNDE-----------LEPTPGNTLRQ 727
Query: 698 ASVDAFKHVFWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
+ + D ++ A + S+ N+ AM AGSKG+ + + Q C+G Q+
Sbjct: 728 TFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEG 787
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
P FR PH + D +K + VENS+L GL P E F H++
Sbjct: 788 KRIPFGFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTPSEFFFHAM 833
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + +YDGTVRN+ G Q+VQ Y +G
Sbjct: 834 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLG-QLVQLRYGEDG 887
Score = 42.4 bits (98), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEV-----------TNPRLGLPNPTNECSSCGAKDRKA 68
+ GI + E +++S+ EI SE+ +PR G+ + C +C A
Sbjct: 18 VQFGILSPDEIKRMSIGEI-EFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTC-AGSLAD 75
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKER---------QKGAGSSRKE 119
C GHF I+ + H FLS KLL +C C + ++ +K AG++R+
Sbjct: 76 CPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLKKTAGNARRR 135
Query: 120 QPRVCKYC 127
+ + C
Sbjct: 136 LTVIYEIC 143
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 160/577 (27%), Positives = 264/577 (45%), Gaps = 77/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N LS + E
Sbjct: 147 LMGKRVDFSARTVITGDPNLELDQVGVPKSIARNLTYPERVTPYNRAYLSDLVRNGPNEY 206
Query: 376 KGELYVCRKGG----LVRIRRID-ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L RR D AL+ G I+ R L DGD VL NR PS+H S++A V
Sbjct: 207 PGARYVIRDTGERIDLKYNRRGDIALQAGWIVERHLRDGDYVLFNRQPSLHKMSMMAHRV 266
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++ S+ +N P++ DFDGD ++ ++PQ+ AR EL ++ + +Q+++ Q+ +
Sbjct: 267 KLMDYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEEARAELAQIAWVPRQIVSPQANKP 325
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
++ + QD+L L+ + Q+Q + M+ P + P + WSGKQL S
Sbjct: 326 VMGIVQDTLCGVRKFTLRDCLMDYDQVQNILMWLPGWDGIVPQPCILKPKPYWSGKQLLS 385
Query: 550 MLLPPDFEY----------TFPSKD-VYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRD 598
+ +P F D V+I G+++ + + ++I R R
Sbjct: 386 LCIPKGINVFLGDAKAASNNFVKDDGVHIENGEIMYGVINKKVVGSTAGGLIHIIFRERG 445
Query: 599 KVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
V+ DF Q V+ WL G ++ + D + + T N
Sbjct: 446 PVVCRDFFSGVQRVVNYWLLHNGFSIGIGDT-------------------VPDKATTVNI 486
Query: 657 QQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + + MN + +A+ + ++ G L S+E + L++A D H ++
Sbjct: 487 NETIAKAKSDVMNLIQAAR-HDWLKADPGMTLRESFEANVNRILNKARDDVGSHAEQNLP 545
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSC 765
+ N++ M AGSKG+ + + Q S C+G Q P FR PH
Sbjct: 546 DW--------NNVKQMVIAGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPH---- 593
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D T ++ + VENS+L GL E F H++ R+ G
Sbjct: 594 -----FTKDDYTPESRGF-----VENSYLRGLTAHEFFFHAMAGREGLIDTAVKTAETGY 643
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ N +++F+Y +G
Sbjct: 644 IQRRLVKALEDVTICYDGTVRNST-NNVIEFAYGEDG 679
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 157/570 (27%), Positives = 264/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N RL+ + E
Sbjct: 345 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEH 404
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 405 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 460
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
++ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q+++
Sbjct: 461 MSHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSP 519
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP-HRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P + +W+G
Sbjct: 520 QSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYWIPVWDGVIPPPAIVKPKPLWTG 579
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D + KD + + G + + G L ++
Sbjct: 580 KQLLSMAIPKGIHLQRFDDGKNLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVM 639
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+ + Q+V+ WL G ++ + D + + + K + I R+ Q+
Sbjct: 640 REKGPQVCAQLFGSIQKVVNYWLLHNGFSIGIGDTI--ADASTMKNVTTTIEDAKRKVQE 697
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
N D+ N L D E +L+ S+E S L+QA A + ++++
Sbjct: 698 IIN------DAQQNKL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 744
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 745 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFT 793
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 794 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 848
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 849 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 877
Score = 43.9 bits (102), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + +C +C ++D C GHFG I+ + H F++ I K+ IC C
Sbjct: 54 LNDPRLGSIDRNFKCQTC-SEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHC 111
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/593 (26%), Positives = 270/593 (45%), Gaps = 92/593 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N++++S +
Sbjct: 341 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMSELVQRG 400
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 401 NSQYPGAKYIIRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 456
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L +Q
Sbjct: 457 KMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQ 515
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V + QM L MF P + P I K
Sbjct: 516 IITPQANKPVMGIVQDTLTAIRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPRPAILK--P 573
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQ+FS+++P PD E P+K + K++ G
Sbjct: 574 KPLWTGKQIFSLIIPGNVNMIRTHSTHPDDEDDGPNKWISPGDTKVMVEHGELVMGILCK 633
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 634 RTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL-- 691
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 692 ----EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILND 738
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 739 ARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 790
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E + H++
Sbjct: 791 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGG 834
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 835 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDG 886
Score = 41.6 bits (96), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 22/129 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVIDRHSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVSPNNPKIKEVVMKSKGQPRK 134
Query: 119 EQPRVCKYC 127
V C
Sbjct: 135 RLAFVYDLC 143
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 162/586 (27%), Positives = 264/586 (45%), Gaps = 96/586 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 352 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAY 411
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 412 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 471
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 472 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 530
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L Q+Q + ++ P P I K +W+GKQ+
Sbjct: 531 VMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGNVPIPSIIK--PKPLWTGKQI 588
Query: 548 FSMLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQY 591
SM++P P+ + + P D + I G+++ G+S +G L
Sbjct: 589 LSMVIPRGINIHRAPEPKSSNPVFDDGMLIENGEIVFGIVEKKTVGAS-----QGGLVHV 643
Query: 592 LIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL--------YLASHSCSRKILMDE 642
+ + + D Q V+ WL G ++ + D Y+ S+K+ +
Sbjct: 644 VFREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAG 703
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I +D + + A + R E + QR L++
Sbjct: 704 I-----------------IDDATHDRLKAAPGMTIR----ESFESKVQRELNLARD---- 738
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR- 758
D A K +DN++ M AGSKG+ + + Q S+C+G Q P FR
Sbjct: 739 ------DCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRH 792
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 793 RTLPH---------FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDT 838
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 839 AVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFVYGEDG 883
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA----VSEVTNPRLGLPNPTNECSSCGAKDR 66
EV GIL+ + + + E VM+ + + +PR+G + +C +CG +
Sbjct: 18 EVQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTIDRNFKCQTCG-EGM 76
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + HP F+ + K+L IC C ++ +
Sbjct: 77 SECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKAD 118
>gi|407852687|gb|EKG06051.1| RNA polymerase IIA largest subunit, putative, partial [Trypanosoma
cruzi]
Length = 1588
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 154/579 (26%), Positives = 269/579 (46%), Gaps = 86/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L ER+++ N +RL+ + R +
Sbjct: 186 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVR-RPVYP 244
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L R R L +GD++ R L +GD+VL NR P++H S++ V
Sbjct: 245 SANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHLINGDVVLFNRQPTLHRMSMMGHRV 304
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 305 RVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 363
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSV------WSG 544
+ + QDSL ++ L + L +Q + ++ D++++ +V W+G
Sbjct: 364 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWL-------DLWQLPVPAVLRPRPLWTG 416
Query: 545 KQLFSMLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLI- 593
KQ+FS++LP P FP D + I G+L+ S + G+L +
Sbjct: 417 KQVFSLILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKSIVGAAPGSLIHVIFN 476
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD- 652
+R D+V F+ Q + +L G +V + D + + + M+E+ RE +
Sbjct: 477 ERGSDEVARFINGVQRITTFYLINFGFSVGVQDTVADADTLRQ---MNEVLVKTRENVEK 533
Query: 653 ---TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
N + L + M L S+E ++AL++ +A K +
Sbjct: 534 IGAAANNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSN 577
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHEL 763
++ + NS M +AGSKG L + Q ++ +G Q+ S P FR PH +
Sbjct: 578 VR--------RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFM 629
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--P 821
D E ++ + ++ GL P E F H++ R+
Sbjct: 630 ---------LDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDT 675
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G L R+L+ + D+ AYDGTVRNA +++QF Y +G
Sbjct: 676 GYLQRKLIKALEDVHAAYDGTVRNA-NQELIQFMYGEDG 713
Score = 43.9 bits (102), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++I+ TR+ + + C GI+A L L A G NI H ++ +T+ G
Sbjct: 1184 NIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTVLVDTICQRG 1243
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S +S P ++ F + AA G D ++G L G
Sbjct: 1244 YLMAVSRVGI----NRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQA 1299
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1300 RIGT-GLFDLV 1309
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 163/579 (28%), Positives = 278/579 (48%), Gaps = 81/579 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 400 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 455
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 456 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 514
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P I +WSG
Sbjct: 515 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAIIKPKPLWSG 574
Query: 545 KQLFSMLLPPDFEYTFPSKDVYIS---GGK-LISAEGSSWL-RDYE-------------- 585
KQ+ SM +P K ++I GG+ L+SA+ + L D E
Sbjct: 575 KQILSMAIP---------KGIHIQRFDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGAT 625
Query: 586 -GNLFQYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
G L +++ +V L+++ Q+V+ WL G ++ + D + + M +I
Sbjct: 626 GGGLIHTVMREKGPQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADAST------MKDI 679
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
++EA+ Q++++D+ N L D E +L+ S+E S L+QA A
Sbjct: 680 TKTIQEAKQ--KVQEIILDAQHNKL----DPEPGMTLRE---SFEHNVSRVLNQARDTAG 730
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+ +++L N++ M +GSKG+ + + Q S C+G Q R P
Sbjct: 731 RSAEMSLKDL--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGF 779
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
+ + D + +K + VENS+L GL P E F H++ R+
Sbjct: 780 ADRSLPHFTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 834
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 835 GYIQRRLVKALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 872
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + +C +CG +D C GHFG I+ + H F++ I K+ SIC C
Sbjct: 54 LNDPRLGSIDRNFKCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHC 111
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 158/580 (27%), Positives = 270/580 (46%), Gaps = 67/580 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 294 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 353
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 354 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 413
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 414 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 472
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ QS R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 473 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILK--PR 530
Query: 540 SVWSGKQLFSMLLP--------------PDFEYTFPSKD-VYISGGKLISAE-GSSWLRD 583
+W+GKQ+F++++P + + P V I G+L+S L
Sbjct: 531 PIWTGKQVFNLIIPKQINLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGT 590
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M+
Sbjct: 591 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAATMEN 644
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +A++ + ++L+ N L ++E+ R+ S+E + + L++A A
Sbjct: 645 INETISKAKN--DVKKLIKQFRDNQL----EAEAGRTTME---SFENRVNEVLNKARDVA 695
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A K S+ N+L AM AGSKG + + Q + C+G Q+ R P
Sbjct: 696 --------GSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEGK---RIPFG 744
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 745 FTNRTLPHFTKNDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 799
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 800 TGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 838
Score = 42.4 bits (98), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL ++ +T
Sbjct: 1286 CHED---VDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDT 1342
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1343 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIM 1397
Query: 1245 WGKVPSVGTGG 1255
G++ +GTGG
Sbjct: 1398 LGQLAPIGTGG 1408
>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
Length = 872
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 158/570 (27%), Positives = 264/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
++ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q+++
Sbjct: 269 MSHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP-HRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L L + + Q+ + + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKLTLRDTFIEYDQVMNMLYWIPVWDGVIPPPAIVKPKPLWTG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D + KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDDGKNLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+ + Q+V+ WL G ++ + D + + + K + I R+ Q+
Sbjct: 448 REKGPQVCAQLFGSIQKVVNYWLLHNGFSIGIGDTI--ADASTMKNVTTTIEDAKRKVQE 505
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
N D+ N L D E +L+ S+E S L+QA A + ++++
Sbjct: 506 IIN------DAQQNKL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 685
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 162/586 (27%), Positives = 264/586 (45%), Gaps = 96/586 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 349 LMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAY 408
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 409 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 468
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 469 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 527
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L Q+Q + ++ P P I K +W+GKQ+
Sbjct: 528 VMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGNVPIPSIIK--PKPLWTGKQI 585
Query: 548 FSMLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQY 591
SM++P P+ + + P D + I G+++ G+S +G L
Sbjct: 586 LSMVIPRGINIHRAPEPKSSNPVFDDGMLIENGEIVFGIVEKKTVGAS-----QGGLVHV 640
Query: 592 LIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL--------YLASHSCSRKILMDE 642
+ + + D Q V+ WL G ++ + D Y+ S+K+ +
Sbjct: 641 VFREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAG 700
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I +D + + A + R E + QR L++
Sbjct: 701 I-----------------IDDATHDRLKAAPGMTIR----ESFESKVQRELNLARD---- 735
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR- 758
D A K +DN++ M AGSKG+ + + Q S+C+G Q P FR
Sbjct: 736 ------DCGQYAQKSLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRH 789
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 790 RTLPH---------FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDT 835
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 836 AVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGD-LVQFVYGEDG 880
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA----VSEVTNPRLGLPNPTNECSSCGAKDR 66
EV GIL+ + + + E VM+ + + +PR+G + +C +CG +
Sbjct: 18 EVQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTIDRNFKCQTCG-EGM 76
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + HP F+ + K+L IC C ++ +
Sbjct: 77 SECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKAD 118
>gi|83320450|gb|ABC02852.1| RNA polymerase II largest subunit, partial [Rhizophlyctis rosea]
Length = 1006
Score = 189 bits (479), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 159/579 (27%), Positives = 265/579 (45%), Gaps = 78/579 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLLE 375
++GKR D R V+TGDPN+ + ++G+P +A L E + N+E+L+ ++
Sbjct: 266 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPEVVTKCNFEKLAAAVANGPTAH 325
Query: 376 KGELYVCRKGGL---VRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV G +R R D+ L++GD + R L D D+++ NR PS+H S++ V
Sbjct: 326 PGAKYVINSNGDRTDLRYAREDSVILKIGDKVERHLMDDDLIIFNRQPSLHKMSMMGHRV 385
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KV+P S+ +N SP++ DFDGD ++ ++PQ+ + E+ EL + +Q+++ Q
Sbjct: 386 KVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYQTKAEIQELCVVPRQIVSPQKNGP 444
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L + + L M + M+ P P I K +W+GKQ+
Sbjct: 445 VMGIVQDTLCGITMFTQRDTFLRKDMMMNILMWVPDWDGNIPEPAILKPV--PLWTGKQM 502
Query: 548 FSMLLP-----------PDFEYTFPSKD---VYISGGKLISAEGS-SWLRDYEGNLFQYL 592
S+++P PD E T+ S V I G+LI+ S + G +
Sbjct: 503 MSLIIPRINMEGKHFGHPDAEKTWMSPGDTRVIIQDGELIAGILSKGTVGSAAGGIIHTT 562
Query: 593 IKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+ + +V F Q V+ WL G ++ + D +A+ + R++ D + G +
Sbjct: 563 MNEHGPEVAKGFFNGTQLVVNYWLLHNGFSIGIGDT-VANAALLRRV-DDHLRNGKEQVA 620
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
D +++ ++E+ G + ++E AALS+A DA
Sbjct: 621 D---------------IIAKAENEALEPSPGMTIKETFESYVGAALSKAREDA------- 658
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHEL 763
K N+ M AGSKG+ + + Q + C+G Q P FRF PH
Sbjct: 659 -GKGGLAGLGKQNNARHMVYAGSKGSDVNIGQMAACVGQQLVEGKRIPYGFRFRTLPHYT 717
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D+ E V+NS++ GL P E F H++ R+
Sbjct: 718 K----------DDYEAES----RGFVDNSYVRGLTPQEFFFHAMGGREGLIDTAVKTAET 763
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G ++VQF Y +G
Sbjct: 764 GYIQRRLVKAMEDVMAKYDGTVRNSLG-EVVQFLYGEDG 801
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 165/618 (26%), Positives = 276/618 (44%), Gaps = 102/618 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N++++
Sbjct: 339 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKM-----LE 393
Query: 373 LLEKGE------LYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINR 416
L+++G Y+ R G RID L+ G + R + DGD+V+ NR
Sbjct: 394 LVQRGNSQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNR 449
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
P++H S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L
Sbjct: 450 QPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLH 508
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDI 533
+Q+I Q+ + ++ + QD+LTA + + V ++ QM L MF P + P I
Sbjct: 509 ITPRQIITPQANKPVMGIVQDTLTAIRKMTKRDVFINKEQMMNLLMFLPIWDGKMPRPAI 568
Query: 534 FKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--- 578
K +W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 569 LK--PQPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVM 626
Query: 579 -----SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASH 632
L G+L + +V Y Q V+ WL + G ++ + D
Sbjct: 627 GILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQ 686
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
+ EI +++A++ + +++ +H N + + R ++E Q +
Sbjct: 687 TYL------EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVN 731
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH-- 750
L+ A A K ++ N+L AM AGSKG+ + + Q C+G Q+
Sbjct: 732 RILNDARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 783
Query: 751 -SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFI 804
P FR PH + Y P + VENS+L GL P E +
Sbjct: 784 GKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYF 827
Query: 805 HSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
H++ R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 828 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLC 886
Query: 863 TPTGEIGDQPVGSLSACA 880
E P LS A
Sbjct: 887 GEMVEFQTLPTVKLSNKA 904
Score = 43.5 bits (101), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 22/129 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVIDRNSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRK 118
C GHFG I + H F++ K+L +C P I++ K G RK
Sbjct: 75 ECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEVVMKSKGQPRK 134
Query: 119 EQPRVCKYC 127
V C
Sbjct: 135 RLTFVYDLC 143
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 208/905 (22%), Positives = 372/905 (41%), Gaps = 158/905 (17%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------ 99
+PR G+ T C +C A + C GHFG I+ + H FL K+L +C
Sbjct: 26 DPRQGVIERTGRCQTC-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 84
Query: 100 ------PKCKTIRKERQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTA 152
PK K I K G +K V C +N + M K + G
Sbjct: 85 LVDSNNPKIKDILA---KSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDED 141
Query: 153 IIVE--------IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
+ E ++ + +L + W + D+Q++ + +LS ++V + K
Sbjct: 142 LTKEKGHGGCGRYQPRIRRSGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFK 193
Query: 205 DVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHL 257
+ S E F+L + + + PV P + R V + + D+ T L
Sbjct: 194 RI--SDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKL 247
Query: 258 KKMVDYRGR------DIELSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNID 303
+V + + +H++ + +K+ + H L R R K++
Sbjct: 248 ADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLK 307
Query: 304 ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +
Sbjct: 308 QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 367
Query: 364 RLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIV 412
RL + + G Y+ R G RID L+ G + R + DGDIV
Sbjct: 368 RLQELVRRGNSQYPGAKYIIRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIV 423
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVEL 472
+ NR P++H S++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+
Sbjct: 424 IFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 482
Query: 473 TELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFL 529
EL + + ++ QS R ++ + QD+LTA + V L ++ L MF +
Sbjct: 483 QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVP 542
Query: 530 SPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEG 577
P I K +W+GKQ+FS+++P PD E + P K + K++ G
Sbjct: 543 QPAILK--PRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENG 600
Query: 578 S--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLY 628
L G+L + Y+ Q V+ WL + G T+ + D
Sbjct: 601 ELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD-- 658
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---L 685
S + +I +++A+ + +++ +H N L + ++ + + L
Sbjct: 659 ----SIADSKTYQDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRIL 712
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ + ++ + +Q S+ + N+ +M +G+KG+ + + Q
Sbjct: 713 NDARDKTGSSAQKSLSEY------------------NNFKSMVVSGAKGSKINISQVIAV 754
Query: 746 LGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGL 797
+G Q+ P F+ PH + Y P + VENS+L GL
Sbjct: 755 VGQQNVEGKRIPFGFKHRTLPHFIK----------------DDYGPESRGFVENSYLAGL 798
Query: 798 NPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E F H++ R+ G + RRL+ M + YD TVRN+ NQ+VQ
Sbjct: 799 TPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLR 857
Query: 856 YNIEG 860
Y +G
Sbjct: 858 YGEDG 862
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 172/653 (26%), Positives = 292/653 (44%), Gaps = 86/653 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + ++G+P +A L E + +N ERL + +
Sbjct: 265 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWTIALNLTYPETVTPYNIERLKELVEYG 324
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 325 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 380
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 381 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 439
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ Q+ R ++ + QDSL + + ++ + M+ + +P I K
Sbjct: 440 PKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFIAKDVFMNILMWWEDFDGKVPAPTILK 499
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+ +W+GKQ+F++++P T V I G+L++
Sbjct: 500 --PEPLWTGKQVFNLIIPKQINLIRYSSWHNEAERGPITPGDTMVRIEKGELLTGTLCKK 557
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL ++ + D + +
Sbjct: 558 TLGTGTGSLIHVVWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAST----- 612
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M+ I + +A+D +QL+ ++ L ++E R++ S+E + + L++A
Sbjct: 613 -METINQTISQAKDKV--KQLIREAQEKKL----EAEPGRTMMD---SFENRVNQTLNKA 662
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA N A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 663 RDDA--------GNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 711
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D ++ + VENS+L GL P E F H++ R+
Sbjct: 712 IPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSL 876
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G E +
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMDAVWIETQKLDSLKM 825
Query: 877 SACAISEAAYSALD----QPISLLETSPLLNLK------NVLECGSKKSNADQ 919
A D +P +LE P+ +LK NV E +K +AD+
Sbjct: 826 KKTDFDRAFRYEFDDENWKPTYMLE-EPVEDLKTIREFRNVFEAEVQKLDADR 877
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 159/596 (26%), Positives = 272/596 (45%), Gaps = 98/596 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++ KR D R V+T DPN+++ ++G+P +A L E + +N + + +
Sbjct: 264 VRGNLMDKRVDFSGRTVITPDPNLRVDQVGVPRSIAHNLTFPELVTPFNIDVMQERVRRG 323
Query: 373 L-LEKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L++G + R + D D+V+ NR P++H
Sbjct: 324 ANVYPGAKYIIRDNG----ERIDLRFHPKASDLHLQIGYKVERHMQDNDVVIFNRQPTLH 379
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N +P++ DFDGD ++ ++PQ++ R E+ L A+ +
Sbjct: 380 KMSMMCHRVKVLPWSTF-RMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIMNLCAVPRM 438
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+I Q+ R ++ + QD+LTA + + V L+ QM L MF P R P I K
Sbjct: 439 IITPQANRPVMGIVQDTLTAVRKMTKRDVFLTRAQMMHLLMFLPTWDGRMPQPAIIK--P 496
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+ +W+GKQ+FS+++P PD E + P K V I G+LIS
Sbjct: 497 EPLWTGKQIFSLVIPGRVNVIRTHSTHPDGEDSGPYKWISPGDTKVLIEDGELISGILCK 556
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + +V LY Q V+ WL + G ++ + D + + +
Sbjct: 557 KTLGTSAGSLVHIVFLEMGFEVAGELYGNIQTVVNNWLLIEGHSIGIGD------TIADQ 610
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAA 694
EI +R+A+ + +++ +H + L + ++ + + L+ + ++ +
Sbjct: 611 QTYHEIQETIRKAK--ADVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGS 668
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA- 753
+Q S+ F N+ AM AGSKG+ + + Q C+G Q++
Sbjct: 669 KAQKSLSEF------------------NNFKAMVVAGSKGSKINISQVIACVGQQNAEGK 710
Query: 754 --PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHS 806
P FR+ PH + Y P + VENS+L GL P E + H+
Sbjct: 711 RIPFGFRYRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHA 754
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+ G + RRL+ M + YDGTVRN Q+VQ Y +G
Sbjct: 755 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQV-EQLVQLGYGEDG 809
>gi|31127036|gb|AAF26656.2|AF139006_1 RNA polymerase II largest subunit [Scolopendra polymorpha]
Length = 734
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 161/594 (27%), Positives = 270/594 (45%), Gaps = 94/594 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +++ +
Sbjct: 1 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVQRG 60
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 61 NNQYPGAKYIIRDNG----ERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLH 116
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ ++VLP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + +Q
Sbjct: 117 KMSMMGHHIRVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQ 175
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I QS R ++ + QD+LTA + + V L QM L MF P + P I K
Sbjct: 176 IITPQSNRPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAILK--P 233
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQLFS+++P PD E P K V + GKLIS
Sbjct: 234 KPLWTGKQLFSLIIPGAVNVIRTHYTHPDDEDDSPYKWISPGDTKVLVEHGKLISGILCK 293
Query: 579 SWLRDYEGNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L ++ ++ F + Q V+ WL + G T+ + D +
Sbjct: 294 KTLGTSAGSLLHIVMLELGWEIAGTFYWHIQMVINNWLLLEGHTIGIGDTIADPQTYI-- 351
Query: 638 ILMDEIFYGLREAQ-DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
+I +++A+ D + +++ N + + R ++E Q + L+
Sbjct: 352 ----DIQNSIKKAKHDVID----VIEKAHNDELEPTPGNTLRQ------TFENQVNRILN 397
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A + A K S+ N+ AM +G+KG+ + + Q C+G Q+
Sbjct: 398 DARDKT--------GSSAQKSLSEYNNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRI 449
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVT 808
P FR PH + Y P + VENS+L GL P E + H++
Sbjct: 450 PFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMG 493
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 494 GREGLIDTAVKTAETGYIQRRLIKAMESIMITYDGTVRNSVG-QLIQLRYGEDG 546
>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
Length = 1017
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/577 (26%), Positives = 268/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI L E+G+P +A L E + +N +L + E
Sbjct: 278 LMGKRVDFSARTVITGDPNISLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 337
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 338 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 393
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 394 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 452
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + W+G
Sbjct: 453 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPTWTG 512
Query: 545 KQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P E P+ D +++ GG+L+ S G ++I
Sbjct: 513 KQIVSLVIPKGLNLIRGSEEGLSPANDDGLFVHGGELMYGLFSKKSVGASGGGIIHIIFN 572
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D ++ +R+ ++
Sbjct: 573 EKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNT-------------IRQIENA 619
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V SA ++E L G ++ ++E + S AL+ A +A ++
Sbjct: 620 VNRQKADV---AEITRSATENE-LEPLPGMNVRETFESKVSKALNAARDEAGAETEKSLK 675
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 676 DL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 723
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 724 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 773
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 774 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 809
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 208/905 (22%), Positives = 372/905 (41%), Gaps = 158/905 (17%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------ 99
+PR G+ T C +C A + C GHFG I+ + H FL K+L +C
Sbjct: 26 DPRQGVIERTGRCQTC-AGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKL 84
Query: 100 ------PKCKTIRKERQKGAGSSRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTA 152
PK K I K G +K V C +N + M K + G
Sbjct: 85 LVDSNNPKIKDILA---KSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDED 141
Query: 153 IIVE--------IDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLK 204
+ E ++ + +L + W + D+Q++ + +LS ++V + K
Sbjct: 142 LTKEKGHGGCGRYQPRIRRSGLELYAE-WKHVNEDSQEK-------KILLSPERVHEIFK 193
Query: 205 DVDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHL 257
+ S E F+L + + + PV P + R V + + D+ T L
Sbjct: 194 RI--SDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKL 247
Query: 258 KKMVDYRGR------DIELSHLVQDCLKISKLH--------LDKSSRKDSAEVRQKKNID 303
+V + + +H++ + +K+ + H L R R K++
Sbjct: 248 ADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLK 307
Query: 304 ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +
Sbjct: 308 QRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNID 367
Query: 364 RLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIV 412
RL + + G Y+ R G RID L+ G + R + DGDIV
Sbjct: 368 RLQELVRRGNSQYPGAKYIIRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIV 423
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVEL 472
+ NR P++H S++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+
Sbjct: 424 IFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEI 482
Query: 473 TELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFL 529
EL + + ++ QS R ++ + QD+LTA + V L ++ L MF +
Sbjct: 483 QELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVP 542
Query: 530 SPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEG 577
P I K +W+GKQ+FS+++P PD E + P K + K++ G
Sbjct: 543 QPAILK--PRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENG 600
Query: 578 S--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLY 628
L G+L + Y+ Q V+ WL + G T+ + D
Sbjct: 601 ELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD-- 658
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---L 685
S + +I +++A+ + +++ +H N L + ++ + + L
Sbjct: 659 ----SIADSKTYQDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRIL 712
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ + ++ + +Q S+ + N+ +M +G+KG+ + + Q
Sbjct: 713 NDARDKTGSSAQKSLSEY------------------NNFKSMVVSGAKGSKINISQVIAV 754
Query: 746 LGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGL 797
+G Q+ P F+ PH + Y P + VENS+L GL
Sbjct: 755 VGQQNVEGKRIPFGFKHRTLPHFIK----------------DDYGPESRGFVENSYLAGL 798
Query: 798 NPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFS 855
P E F H++ R+ G + RRL+ M + YD TVRN+ NQ+VQ
Sbjct: 799 TPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLR 857
Query: 856 YNIEG 860
Y +G
Sbjct: 858 YGEDG 862
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 158/580 (27%), Positives = 270/580 (46%), Gaps = 67/580 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 347 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 406
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 407 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 466
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 467 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 525
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ QS R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 526 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILK--PR 583
Query: 540 SVWSGKQLFSMLLP--------------PDFEYTFPSKD-VYISGGKLISAE-GSSWLRD 583
+W+GKQ+F++++P + + P V I G+L+S L
Sbjct: 584 PIWTGKQVFNLIIPKQINLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGT 643
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M+
Sbjct: 644 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAATMEN 697
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +A++ + ++L+ N L ++E+ R+ S+E + + L++A A
Sbjct: 698 INETISKAKN--DVKKLIKQFRDNQL----EAEAGRTTME---SFENRVNEVLNKARDVA 748
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A K S+ N+L AM AGSKG + + Q + C+G Q+ R P
Sbjct: 749 --------GSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEGK---RIPFG 797
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 798 FTNRTLPHFTKNDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 852
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 853 TGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 891
Score = 42.4 bits (98), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL ++ +T
Sbjct: 1339 CHED---VDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCDT 1395
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1396 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIM 1450
Query: 1245 WGKVPSVGTGG 1255
G++ +GTGG
Sbjct: 1451 LGQLAPIGTGG 1461
>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
Length = 1015
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 154/584 (26%), Positives = 266/584 (45%), Gaps = 70/584 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPNI L E+G+P +A L E + +N +L +
Sbjct: 270 VRGNLMGKRVDFSARTVITGDPNISLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNG 329
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID +L+ G + R + DGD ++ NR PS+H
Sbjct: 330 PNEHPGARYVIRDTG----ERIDLRYHKRAGDISLQYGWKVERHIVDGDYIIFNRQPSLH 385
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L +
Sbjct: 386 KESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLN 444
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K S
Sbjct: 445 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQDQVMNILLWVPDWDGIIPQPAILKPS- 503
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ S+++PP D + IS G+L+ S +
Sbjct: 504 -PMWTGKQIISLVIPPGLNLGRSGDDGFSPIDDSGLLISNGELMYGLLSKKIVGASSAGI 562
Query: 590 QYLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+++ ++ + + F AQ V+ WL G ++ + D + +
Sbjct: 563 IHIVYNEKGPEAAMAFFNGAQTVVNYWLLHNGFSIGIGDTIPDRET-------------I 609
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKH 705
+ +D N Q+ V + SA +S +L G ++ ++E + S AL++A DA
Sbjct: 610 KHIEDAVNKQKAEV---LEITKSATES-VLDTLPGMNVRETFESRVSKALNKARDDAGTE 665
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
+++L N+ + M ++GSKG+ + + Q + +G Q R P
Sbjct: 666 TEKSLKDL--------NNAIQMARSGSKGSTIDISQMTAVVGQQSVEGK---RIPFGFKY 714
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 715 RTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 769
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
+ RRL+ + D+ YDGT+RN+ G+ IVQF Y +G T E
Sbjct: 770 IQRRLVKALEDVMAKYDGTIRNSLGD-IVQFLYGEDGLDGATIE 812
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 257/584 (44%), Gaps = 85/584 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDP++ + ++G+P +A L E + +N ++ + E
Sbjct: 267 LMGKRVDFSARTVITGDPHLSIDQVGVPRSIARNLTFPETVTPYNIHKMQQMVQNGPTEH 326
Query: 377 -GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV + G +RID L+ G + R L D DIV+ NR PS+H S+
Sbjct: 327 PGAKYVIKDDG----QRIDLRYNRRGGDIHLQPGYRVERHLMDDDIVIFNRQPSLHKMSM 382
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ + EL EL + KQ+++
Sbjct: 383 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVPKQIVSP 441
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q ++ + QD+L + L + L M+ P P I K +W
Sbjct: 442 QKNAPIMGIVQDTLCGIRKFTKRDTFLRQDLVMNLLMWVPDWDGTIPQPAIIKPV--PLW 499
Query: 543 SGKQLFSMLLPPDFEYT----------------FPSKDVYISGGKLISA-EGSSWLRDYE 585
+GKQ+ S++LP T P V I G+L+S S +
Sbjct: 500 TGKQIVSLILPAKINVTGMHTAYVQTPSNPEPDIPDCKVLIENGELLSGILDKSMVGSSS 559
Query: 586 GNLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G + + Y V F Q V+ WL G ++ + D + + K +I
Sbjct: 560 GGVIHVAMNEYGPDVAKAFFNGCQTVVNYWLLQHGFSIGIGD------TIADKETTQQIN 613
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
+ +++ C+ ++ + N + S R ++E + L+ A A K
Sbjct: 614 DAIAKSKAKCS---EIIKAAQNGTLEGMPGLSVRE------TFESYITKELNTARDGAGK 664
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF-- 759
++ N++ M AGSKG+ + + Q S C+G Q+ S P F++
Sbjct: 665 SAQMTLKEF--------NNVKQMVVAGSKGSYINVAQMSACVGQQNVEGSRIPFGFKYRS 716
Query: 760 -PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
PH D+T A+ + VENS+L GL P E F H++ R+
Sbjct: 717 LPH---------FTKDDHTPEARGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 762
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRNA G +IVQF Y +G
Sbjct: 763 KTAETGYIQRRLVKALEDLMAQYDGTVRNALG-EIVQFCYGEDG 805
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 161/623 (25%), Positives = 287/623 (46%), Gaps = 63/623 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N L + E
Sbjct: 277 LMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELVQNGPTEY 336
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R D L+ G I+ R L DGD VL NR PS+H S++A +
Sbjct: 337 PGARYVIRDTGDRIDLKYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMAHRI 396
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL ++ + + +++ Q+ +
Sbjct: 397 KLMPYST-FRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKP 455
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
++ + QD+L + +Q + ++ P + P + +W+GKQ+ S
Sbjct: 456 VMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKPLWTGKQILS 515
Query: 550 MLLPPDF--------EYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRD 598
M +P + + P D ++I G++I + +G + + +
Sbjct: 516 MCIPKGINLFRDDENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIHVIFREKGP 575
Query: 599 KVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
+V L++ Q V+ WL G ++ + D + K M+ I + +A+ +
Sbjct: 576 EVTRGLFSGIQMVVNYWLLHHGFSIGIGD------TVPDKATMEAITNFISDAKREVS-- 627
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY 717
+++ + + L+ E +++ S+E + + AL+ A +A + +++
Sbjct: 628 DVIIAAQEDKLL----PEPGMTIRE---SFEAKVNRALNMARDNAGRSAEQSLKD----- 675
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNT 777
DN++ M AGSKG+ + + Q S C+G Q R P+ D +
Sbjct: 676 ---DNNVKQMVTAGSKGSFINISQMSACVGQQSVEGK---RIPYGFKYRTLPHFTKDDYS 729
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDL 835
++ + VENS+L GL P E F H++ R+ G + RRL+ + D+
Sbjct: 730 PESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDV 784
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISL 895
YDGTVRN+ G+ IVQF Y +G T E + L +S + D+ +
Sbjct: 785 MVTYDGTVRNSLGD-IVQFVYGEDGVDGGTVEYQN-----LDPVRLSNEKF---DKKFRV 835
Query: 896 LETSPLLNLK-NVLECGSKKSNA 917
T P + K VL+ G S+A
Sbjct: 836 DVTDPAMTYKAGVLQVGLDDSSA 858
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 188 bits (478), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/570 (26%), Positives = 268/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 400 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 455
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 456 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 514
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P + +W+G
Sbjct: 515 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTG 574
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL S+ +P KD + + G + + G L ++
Sbjct: 575 KQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 634
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ KV L+++ Q+V+ WL G ++ + D + + M ++ ++EA+
Sbjct: 635 REKGPKVCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQT------MRDVNKTIQEAKQ 688
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + +++
Sbjct: 689 --KVQEIIIDAQHNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKD 739
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 740 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFGDRSLPHFT 788
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 789 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 843
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 844 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 872
Score = 45.4 bits (106), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + C +CG +D C GHFG I+ + H F++ I K S+C C
Sbjct: 54 LNDPRLGSIDRNFRCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 149/572 (26%), Positives = 260/572 (45%), Gaps = 54/572 (9%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L ++G+P +A L ER+ +N L + E
Sbjct: 359 LMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELVQNGPTEY 418
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R D L+ G I+ R L DGD VL NR PS+H S+++ +
Sbjct: 419 PGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRI 478
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL ++ + + +++ Q+ +
Sbjct: 479 KLMPYST-FRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKP 537
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
++ + QD+L + +Q + ++ P + P + +W+GKQ+ S
Sbjct: 538 VMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKPLWTGKQILS 597
Query: 550 MLLPPDF--------EYTFP--SKDVYISGGKLI-SAEGSSWLRDYEGNLFQYLIKRYRD 598
M +P + + P K ++I G+++ + +G L + +
Sbjct: 598 MCIPKGINLLRDDENQTSIPIADKGLWIEDGEIVYGVVDKKCVGASQGGLIHVIFREKGP 657
Query: 599 KVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
+V L++ Q V+ WL G ++ + D + + + + I RE +T +
Sbjct: 658 QVTRGLFSGIQMVVNYWLLHHGFSIGIGD--TVPDKATMEAITNFISEAKREVSETISLA 715
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY 717
Q +D S+E + + AL+ A +A + +++
Sbjct: 716 Q-------------EDKLQPEPGMTIRESFEAKVNRALNTARDNAGRSAEQSLKD----- 757
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNT 777
DN++ M AGSKG+ + + Q S C+G Q R P+ D +
Sbjct: 758 ---DNNVKQMVTAGSKGSFINISQMSACVGQQSVEGK---RIPYGFKYRTLPHFTKDDYS 811
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDL 835
++ + VENS+L GL P E F H++ R+ G + RRL+ + D+
Sbjct: 812 PESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKALEDV 866
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
YDGTVRN+ G+ IVQF Y +G T E
Sbjct: 867 MVTYDGTVRNSLGD-IVQFVYGEDGVDGGTVE 897
Score = 49.3 bits (116), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V +++PR+G + +C +CG +D C GHF I+ + H FL+ + K+L +C
Sbjct: 52 VGGLSDPRMGTIDRNMKCQTCG-EDMSTCPGHFAHIELARAVYHVGFLNRVKKILECVCV 110
Query: 101 KCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWY-------PRMRFKLSSKDLSGKTAI 153
+C ++ + V +PA P+ RF + GK
Sbjct: 111 QCSKLKSD------------------VVTDPALELIARRIKDPKKRFTAVHQLCRGKNIC 152
Query: 154 IVEI-DEKLSKKNKKLPDD 171
++ D+K ++ +PDD
Sbjct: 153 EADVNDDKPENPDEPVPDD 171
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/570 (26%), Positives = 268/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 400 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 455
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 456 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 514
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P + +W+G
Sbjct: 515 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTG 574
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL S+ +P KD + + G + + G L ++
Sbjct: 575 KQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 634
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ KV L+++ Q+V+ WL G ++ + D + + M ++ ++EA+
Sbjct: 635 REKGPKVCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQT------MRDVNKTIQEAKQ 688
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + +++
Sbjct: 689 --KVQEIIIDAQHNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKD 739
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 740 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFGDRSLPHFT 788
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 789 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIPRRLVK 843
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 844 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 872
Score = 45.1 bits (105), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + C +CG +D C GHFG I+ + H F++ I K S+C C
Sbjct: 54 LNDPRLGSIDRNFRCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
Length = 751
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 156/597 (26%), Positives = 269/597 (45%), Gaps = 100/597 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +++ +
Sbjct: 1 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRG 60
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 61 NSQYPGAKYIIRDNG----ERIDLRFHPKPSDLHLQCGYRVERHVRDGDVVIFNRQPTLH 116
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ ++V P S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + +Q
Sbjct: 117 KMSMMGHHIRVFPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQ 175
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I QS R ++ + QD+LTA + + V L QM + MF P + P I K
Sbjct: 176 IITPQSNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMFLPIWDGKMPQPAILK--P 233
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
VW+GKQ+FS+++P PD E P K + K++ G
Sbjct: 234 KPVWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVLVEHGELMCGILCK 293
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L ++ + Y+ Q V+ WL + G T+ + D + + +
Sbjct: 294 KSLGTSAGSLLHIVMLELGWETAGLFYSHIQTVVNNWLLLEGHTIGIGD------TIADQ 347
Query: 638 ILMDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSA 693
EI +R+A QD +++ +H + L + ++ + + L+ + ++
Sbjct: 348 QTYHEIQETIRKAKQDVI---EVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTG 404
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
+Q S+ F N+ AM +G+KG+ + + Q C+G Q+
Sbjct: 405 GSAQRSLSEF------------------NNFKAMVVSGAKGSKINISQVIACVGQQNVEG 446
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIH 805
P FR PH + Y P + VENS+L GL P E F H
Sbjct: 447 KRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFH 490
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 491 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSVG-QLIQLRYGEDG 546
>gi|340055761|emb|CCC50082.1| RNA polymerase IIA largest subunit, fragment, partial [Trypanosoma
vivax Y486]
Length = 1068
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 271/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+++ N +RL+ + R +
Sbjct: 344 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVSAVNRKRLTEFVR-RTVYP 402
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 403 SANYVHHPNGTTTKLALLRDRTKVTLNVGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 462
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 463 RVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 521
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 522 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILKPY--PLWTGKQVFS 579
Query: 550 MLLP----PDFEYT---FPSKD--VYISGGKLISAEGSSWLRDYE-GNLFQYLIKRY-RD 598
++LP P + FP D V I G+L+ + + G+L + + D
Sbjct: 580 LILPEVNHPAVQQVKPPFPHNDSSVVIRRGQLLCGPITKGIVGAAPGSLIHVIFNEHGSD 639
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q V +L G +V + D +A R+ M+E+ RE+ +
Sbjct: 640 EVARFINGVQRVTTYFLLNFGFSVGVQDT-VADAGTLRQ--MNEVLVRTRESVEKIGAAA 696
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N + L + M L S+E ++AL++ +A K +++
Sbjct: 697 NNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 737
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH +
Sbjct: 738 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFM----- 787
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 788 ----LDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 838
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 839 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 871
>gi|397135965|gb|AFO11477.1| RNA polymerase I, partial [Lipomyces starkeyi]
Length = 794
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 175/625 (28%), Positives = 281/625 (44%), Gaps = 76/625 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N +L+ + E
Sbjct: 152 LMGKRVDFSARTVISGDPNLALDQVGVPRSIARTLTYPEIVTPYNIHKLTQLVRNGPNEH 211
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R + D D VL NR PS+H S+
Sbjct: 212 PGAKYVIRDTG----ERIDLRYHKRAGEITLQYGWRVERHIVDDDPVLFNRQPSLHKMSM 267
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R ELT++ A+ Q+++
Sbjct: 268 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELTQICAVPLQIVSP 326
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L L + L+ Q+ + + P+ P I K +W
Sbjct: 327 QSNKPVMGIVQDTLCGIRKLTKRDNFLTFDQVMNVLYWVPNWDGVIPQPAIQK--PKPLW 384
Query: 543 SGKQLFSMLLPPDFEYT-FPSKDVYIS----------GGKLISAEGSSWLRDYEGNLFQY 591
+GKQ+FSM +P + K+ +S G + + G L +
Sbjct: 385 TGKQMFSMAIPKGINLQRYDDKNTLLSVRDNGMMIENGEVMFGIVDKKTVGATSGGLI-H 443
Query: 592 LIKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
I R + + DF+ Q V+ WL G ++ + D +A R I + I RE
Sbjct: 444 TIMREKGPIAARDFIGGTQTVVNYWLLHNGFSIGIGDT-IADAKTMRNI-TNTIAQAKRE 501
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
QQ+++D+ N L E +L+ S+E++ S L+ A A +
Sbjct: 502 V------QQIILDAQANRL----PPEPGMTLRE---SFEQKVSKVLNTARDTAGRS---- 544
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN 769
A ++ N++ M AGSKG+ + + Q S C+G Q R P S
Sbjct: 545 ----AETSLTEANNVKQMVVAGSKGSFINISQMSACVGQQMVEGK---RVPFGFSYRTLP 597
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + ++ +I ENS+L GL P E F H++ R+ G + RR
Sbjct: 598 HFTKDDYSPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGIIDTAVKTAETGYIQRR 652
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYS 887
L+ + D+ YDGTVRN+ G+ I+QF Y +G E Q V S+S
Sbjct: 653 LVKALEDVSVKYDGTVRNSLGD-ILQFVYGEDGLDATYVE--KQSVDSMSGSNDRFEQRY 709
Query: 888 ALDQPISLLETSPLLNLKNVLECGS 912
+D ++ P L LECG+
Sbjct: 710 KIDLMDAMWSLKPSL-----LECGN 729
>gi|407418760|gb|EKF38234.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1733
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/574 (26%), Positives = 266/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L ER+N+ N +RL+ + R +
Sbjct: 331 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVNAINKKRLTEFVR-RPVYP 389
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 390 SANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 449
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 450 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 508
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ + P + K +W+GKQ+FS
Sbjct: 509 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLK--PRPLWTGKQVFS 566
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYE-GNLFQYLI-KRYRD 598
++LP P FP D + I G+L+ + + G+L + +R D
Sbjct: 567 LILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSD 626
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + +L G +V + D + + + M+E+ RE +
Sbjct: 627 EVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQ---MNEVLVKTRENVEKIGAAA 683
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N + L + M L S+E ++AL++ +A K +++
Sbjct: 684 NNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 724
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 725 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 772
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 773 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 825
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA +++QF Y +G
Sbjct: 826 KLIKALEDVHAAYDGTVRNA-NQELIQFMYGEDG 858
Score = 44.7 bits (104), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++I+ TR+ + + C GI+A L L A G NI H I+ +T+ G
Sbjct: 1329 NIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRG 1388
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S +S P ++ F + AA G D ++G L G
Sbjct: 1389 YLMAVSRVGI----NRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQA 1444
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1445 RIGT-GLFDLV 1454
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 157/582 (26%), Positives = 270/582 (46%), Gaps = 74/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + E+G+P +A L E + +N +R+ +
Sbjct: 272 IRGNLMGKRVDFSARSVITADPNLSVNEVGVPRTIALNLTYPETVTPFNIQRMR-----Q 326
Query: 373 LLEKGEL------YVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSI 420
L+E G YV R+ G +R R L G + R + DGD+V+ NR P++
Sbjct: 327 LVENGPHKHPGANYVIREDGERLDLRRIRDRSTVPLSYGWKVERHIHDGDVVVFNRQPTL 386
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ V+VLP S+ +N +P++ DFDGD ++ ++PQ+ R EL EL+ + +
Sbjct: 387 HKMSMMGHRVRVLPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSHETRAELEELMMVPR 445
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q+ + ++ + QDSL L + L + M+ P P I K
Sbjct: 446 NIVSPQANKPVMGIVQDSLLGTKLFTKRDTFLERDLVNNTLMWLPSWDGHVPKPAILKPK 505
Query: 538 KDSVWSGKQLFSMLLPP---------------DFEYTFPSKDVYISGGKLISA-EGSSWL 581
+ +W+GKQ+FS+++PP + ++T V I G+++S + +
Sbjct: 506 Q--LWTGKQVFSLIVPPVNVLRKSIGAPDKEDNDDFTASDTKVRIEQGEVLSGIVCKNTV 563
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ G+L + + +FL + Q V+ WL RG ++ + D + + + +
Sbjct: 564 GNASGSLVHIIWNELGHEATRNFLDSVQTVINYWLMNRGFSIGIGDTI--ADPATMQNIT 621
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
I +E D L+ H L ++ R+L ++E + + AL++A
Sbjct: 622 KIIGRSKQEVSD------LITQLHEGKL----EATPGRTLME---TFEMKVNTALNKARD 668
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
+A K ++ N+ M AGSKG+ + + Q C+G Q+ R P
Sbjct: 669 EAGKAAVGSLR--------ATNAAKEMVTAGSKGSNINIAQMIACVGQQNVEGK---RIP 717
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ D T ++ + VENS+L GLNP E F H++ R+
Sbjct: 718 YGFRNRTLPHFVTNDMTPESRGF-----VENSYLRGLNPQEFFFHAMGGREGLIDTAVKT 772
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRLM M D+ YDGTVRN+ G ++VQF Y +G
Sbjct: 773 SETGYIQRRLMKAMEDVMVKYDGTVRNSVG-EVVQFLYGEDG 813
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 159/584 (27%), Positives = 270/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + ++G+P +A L E + +N ERL +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVDNG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGARYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + SP I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPSPTILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPSKDVY-ISGGKLISAE-GSS 579
+W+GKQ+F++++P + P V I G+++S
Sbjct: 503 --PRPLWTGKQVFNLIIPRQINLIRYSAWHSESETGFITPGDTVVRIEKGEVLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL +G ++ + D + +
Sbjct: 561 TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGD------TIADAA 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M+ I + +A++ N L+ +H L ++ R++ S+E + + L++A
Sbjct: 615 TMETINETISKAKNEVN--HLIQLAHQKAL----EAXPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P L + D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPFGLFGRSLPHFTRDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
Length = 871
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 172/625 (27%), Positives = 280/625 (44%), Gaps = 76/625 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLALDQVGVPRSIARTLTYPEVVTPYNIHRLTQLVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R + D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDITLQYGWRVERHIVDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + L+ Q+ + + P+ P I K +W
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTKRDTFLNFDQVMNILYWVPNWDGSIPHPAILK--PKPLW 385
Query: 543 SGKQLFSMLLPPDFEYT-FPSKDVYIS----------GGKLISAEGSSWLRDYEGNLFQY 591
+GKQL SM++P F K+ +S G + + G L
Sbjct: 386 TGKQLLSMVIPKGINLQRFDDKNTLLSPRDNGMMIENGEIMYGVVDKKTVGATSGGLIHT 445
Query: 592 LIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+++ V DF Q V+ WL G ++ + D +A R I + I RE
Sbjct: 446 IMREKGPTVTRDFFSGVQTVVNYWLLHNGFSIGIGDT-IADAKTMRNI-TNTIAQAKREV 503
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
QQ+++D+ N L E +L+ S+E++ S L+ A A + +
Sbjct: 504 ------QQVILDAQANRL----PPEPGMTLRE---SFEQKVSKVLNTARDTAGRSAETSL 550
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
++ N++ M +GSKG+ + + Q S C+G Q R P S
Sbjct: 551 TDM--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSYRTLPH 599
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D + ++ +I ENS+L GL P E F H++ R+ G + RRL
Sbjct: 600 FTKDDYSPESRGFI-----ENSYLRGLTPQEFFFHAMVGREGIIDTAVKTAETGYIQRRL 654
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSA 888
+ + D+ YD TVRN+ G+ I+QF Y +G E Q + S+S +
Sbjct: 655 VKALEDVSVQYDCTVRNSLGD-ILQFVYGEDGLDATYVE--KQSLDSMS------GSNER 705
Query: 889 LDQPISLLETSPLLNLK-NVLECGS 912
+Q + P LK +LECG+
Sbjct: 706 FEQRYKIDLMDPARTLKPTLLECGN 730
>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
Length = 870
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 159/578 (27%), Positives = 266/578 (46%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN++L ++G+P +A L E + +N +L+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLTYPEIVTPFNIHKLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L + Q+++
Sbjct: 269 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + DS + + M L + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFWIPNWDGVVPTPAILKPKPLWTG 387
Query: 545 KQLFSMLLPPDFEY---------TFPSKD-VYISGGKLISAEGSSWLRDYEGNLFQYLIK 594
KQ+ SM +P T P + +YI G+++ G + I
Sbjct: 388 KQMVSMCIPKGIHLQRFDDQNPITCPKDNGMYIIDGQIMWGVVDKKTIGATGGGLVHTIM 447
Query: 595 RYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
R + + +F Q+V+ WL G ++ + D S + M ++ + EA+
Sbjct: 448 REKGSAVCCNFFGTIQKVVNFWLLHYGFSIGIGDTIADSAT------MRDVTETIEEAKK 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+++++++H N L +A+ + R S+E S L+QA A + +++
Sbjct: 502 KV--KEIILEAHANTL-TAEAGMTMRE------SFEHNVSRVLNQARDTAGRSAEMSLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF---RFPHELSCA 766
L N++ M AGSKG+ + + Q S C+G Q P F PH
Sbjct: 553 L--------NNVKQMVVAGSKGSFINISQMSACVGQQMVEGKRVPFGFADRTLPH----- 599
Query: 767 AWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
C Y P + +ENS+L GL P E F H++ R+ G
Sbjct: 600 -----------FCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 649 YIQRRLVKALEDVMVQYDGTVRNSLGD-VIQFVYGEDG 685
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/576 (26%), Positives = 268/576 (46%), Gaps = 54/576 (9%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN++L ++G+P +A L ER+ +N L +
Sbjct: 357 LRGNLMGKRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNITYLQELVRNG 416
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
E G YV R G L +R D L+ G I+ R L DGD VL NR PS+H S++
Sbjct: 417 PTEYPGARYVVRDTGDRIDLRYNKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMM 476
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
+ +K++P S+ +N P++ DFDGD ++ ++PQ+ R EL ++ + + +++ Q
Sbjct: 477 SHRIKLMPYST-FRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQ 535
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGK 545
+ + ++ + QD+L + +Q + ++ P + P + +W+GK
Sbjct: 536 ANKPVMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKPLWTGK 595
Query: 546 QLFSMLLPPDF--------EYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLIK 594
Q+ SM +P + + P D ++I G++I + +G + + +
Sbjct: 596 QILSMCIPKGINLFRDDENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIHVIFR 655
Query: 595 RYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
+V L++ Q V+ WL G ++ + D + K M+ I + EA
Sbjct: 656 EKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGD------TVPDKGTMETITKFISEA--- 706
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
+L V + ++ M+ +D S+E + + AL+ A +A + +++
Sbjct: 707 ----KLEVANVIS--MAQEDKLQPEPGMTIRESFEAKVNRALNMARDNAGRSAEQSLKD- 759
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRA 773
DN++ M AGSKG+ + + Q S C+G Q R P+
Sbjct: 760 -------DNNVKQMVTAGSKGSFINISQMSACVGQQSVEGK---RIPYGFKYRTLPHFTK 809
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFF 831
D + ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 810 DDYSPESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 864
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
+ D+ AYDGTVRN+ G+ IVQF Y +G T E
Sbjct: 865 LEDVMVAYDGTVRNSLGD-IVQFVYGEDGVDGGTVE 899
Score = 48.9 bits (115), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 3 NEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEI------------GAVSEVTNPRLG 50
N+F P+ + I GI + E + SV +I V +++PR+G
Sbjct: 4 NQFVHS--SAPTRRVRTIQFGIMSPDEIKGFSVAKIEHPETYEEGGVHPKVGGLSDPRMG 61
Query: 51 LPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
+ +C +CG +D C GHF I+ + H FL+ + K+L +C +C ++ +
Sbjct: 62 TIDRNMKCQTCG-EDMSTCPGHFAHIELARPVYHVGFLNRVKKILECVCVQCGKLKSD 118
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 188 bits (477), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 159/578 (27%), Positives = 266/578 (46%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN++L ++G+P +A L E + +N +L+ + E
Sbjct: 345 LMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLTYPEIVTPFNIHKLTEYVRNGPNEH 404
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 405 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 460
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L + Q+++
Sbjct: 461 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSP 519
Query: 486 QSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + DS + + M L + P + +W+G
Sbjct: 520 QSNKPVMGIVQDTLCGVRKMTIRDSFIDYDMVMNILFWIPNWDGVVPTPAILKPKPLWTG 579
Query: 545 KQLFSMLLPPDFEY---------TFPSKD-VYISGGKLISAEGSSWLRDYEGNLFQYLIK 594
KQ+ SM +P T P + +YI G+++ G + I
Sbjct: 580 KQMVSMCIPKGIHLQRFDDQNPITCPKDNGMYIIDGQIMWGVVDKKTIGATGGGLVHTIM 639
Query: 595 RYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
R + + +F Q+V+ WL G ++ + D S + M ++ + EA+
Sbjct: 640 REKGSAVCCNFFGTIQKVVNFWLLHYGFSIGIGDTIADSAT------MRDVTETIEEAKK 693
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+++++++H N L +A+ + R S+E S L+QA A + +++
Sbjct: 694 --KVKEIILEAHANTL-TAEAGMTMRE------SFEHNVSRVLNQARDTAGRSAEMSLKD 744
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF---RFPHELSCA 766
L N++ M AGSKG+ + + Q S C+G Q P F PH
Sbjct: 745 L--------NNVKQMVVAGSKGSFINISQMSACVGQQMVEGKRVPFGFADRTLPH----- 791
Query: 767 AWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
C Y P + +ENS+L GL P E F H++ R+ G
Sbjct: 792 -----------FCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 840
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 841 YIQRRLVKALEDVMVQYDGTVRNSLGD-VIQFVYGEDG 877
Score = 46.6 bits (109), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H F++ I K+ S+C
Sbjct: 52 VGGLNDPRLGTIDRNFKCQTCG-EGMAECPGHFGHIELAKPVFHIGFIAKIKKICESVCF 110
Query: 101 KCKTI 105
C +
Sbjct: 111 HCGKV 115
>gi|401426590|ref|XP_003877779.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494025|emb|CBZ29319.1| RNA polymerase ii largest subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1662
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/574 (26%), Positives = 266/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N N +RL+ + R +
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINRKRLTEFVQ-RTVYP 382
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 383 SANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRV 442
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 443 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 501
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + + +Q + ++ L P I K +W+GKQ+FS
Sbjct: 502 CMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILK--PRPLWTGKQIFS 559
Query: 550 MLLP-------PDFEYTFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLI-KRYRD 598
++LP P + FP D I G L+ A + G+L + +R D
Sbjct: 560 LILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSD 619
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + + +V + D + + M+ + + R++ +
Sbjct: 620 EVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKE---MNNVLHKTRQSVEKIGAAA 676
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N +L + M+ L S+E ++AL++ +A K +++
Sbjct: 677 NNGKLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 717
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 718 -----RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 765
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ VE GL P E + H++ R+ G L R
Sbjct: 766 --FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQR 818
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ +YDGTVRNA +++Q +Y +G
Sbjct: 819 KLVKALEDVHASYDGTVRNA-NQELIQLAYGEDG 851
Score = 45.4 bits (106), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++ID++++ + I GI+A + L+ L A G NI H I+ +T+ G
Sbjct: 1319 NIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRG 1378
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S S P ++ F + AA G D ++G L G
Sbjct: 1379 YLMAVSRTGI----NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANLVLGNQA 1434
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1435 RIGT-GLFDLM 1444
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 158/565 (27%), Positives = 262/565 (46%), Gaps = 54/565 (9%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ L E+G+P +A L ER+ +N L + +
Sbjct: 204 LMGKRVDFSARTVITGDPNLDLDEVGVPKSIAMNLTFPERVTPYNIAYLQELVRNGPTTY 263
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 264 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLRDGDFVLFNRQPSLHKMSMMSHRV 323
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ +
Sbjct: 324 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKP 382
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
++++ QD+L L Q+Q + ++ P S P I +W+GKQ+ S
Sbjct: 383 VMAIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPLPTVIKPKPLWTGKQILS 442
Query: 550 MLLP--------PDFEYTFPSKD--VYISGGK-LISAEGSSWLRDYEGNLFQYLIKRYRD 598
M +P PD + P D + I G+ L + +G L +
Sbjct: 443 MCIPRGINIYRSPDPKSFNPVFDDGMNIENGEILFGVVEKKTVGASQGGLIHITFREKGP 502
Query: 599 KVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
+V L++ Q+V+ WL G ++ + D + + + ++I A N
Sbjct: 503 EVTRALFSGLQQVVNYWLFHNGFSIGIGDTIADRGTMAH--IQEQI------AIRKQNVT 554
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY 717
Q + D+ + L +A S + E++ + A Q A K++
Sbjct: 555 QAIDDATHDRLKAAPGMTIRESFESR---VERELNLARDQNGQYAQKNL----------- 600
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNT 777
+DN++ M AGSKG+ + + Q S+C+G Q R P+ D
Sbjct: 601 -KEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEG---RRIPYGFRHRTLPHFTKDDFG 656
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDL 835
A+ + VENS+L GL P E F H++ R+ G + RRL+ + D+
Sbjct: 657 PEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 711
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEG 860
YDGTVRN+ G+ ++QF Y +G
Sbjct: 712 MVCYDGTVRNSLGD-LIQFVYGEDG 735
>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
Length = 872
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 157/570 (27%), Positives = 267/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+ + A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSLICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMLYWIPNWDGVIPPPAIVKPKPLWSG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDDGTNLMSPKDNGMLIVDGEIMFGVVTKLTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ V L++A Q+V+ WL G ++ + D S + M + ++EA++
Sbjct: 448 REKGPYVCAQLFSAIQKVVNYWLLHNGFSIGIGDTIADSDT------MKTVTTTIQEAKN 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++++ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILEAQQNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDG 685
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 265/582 (45%), Gaps = 71/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 348 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYG 407
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 408 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQP 463
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 464 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 522
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
K +++ Q+ R ++ + QD+L + + D+ + + M L + P +
Sbjct: 523 PKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILK 582
Query: 538 KDSVWSGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAE-GSSWL 581
+W+GKQ+F++++P D E F + V I G+L++ L
Sbjct: 583 PRPLWTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTL 642
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + + D FL Q ++ WL G T+ + D +A S KI
Sbjct: 643 GTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT-IADSSTMEKI-- 699
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+ N + + D F D E R+++ ++E + + L++A
Sbjct: 700 ---------NETISNAKTAVKDLIRQFQGKELDPEPGRTMRD---TFENRVNQVLNKARD 747
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
DA + A K ++ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 748 DA--------GSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIP 796
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 797 FGFDGRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 851
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 852 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 892
>gi|385805645|ref|YP_005842043.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
Kam940]
gi|383795508|gb|AFH42591.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
Kam940]
Length = 882
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 159/582 (27%), Positives = 263/582 (45%), Gaps = 90/582 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPNI + E+G+P A+ L + ++ WN E + S ++ G
Sbjct: 317 GKRVDFSSRTVISPDPNIGINEVGVPEDAAKILTVPVKVTQWNLEEMRSYVLNGPYKWPG 376
Query: 378 ELYVCRKGGLVRIRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
Y+ R G +R+D +L G II R L DGDIVL NR PS+H S+
Sbjct: 377 ANYIIRPDG----KRVDLRYFKDRKALASSLTPGYIIERHLIDGDIVLFNRQPSLHRMSI 432
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKVLP +N L C P++ DFDGD ++ ++PQ AR E EL+ + + +++
Sbjct: 433 MAHQVKVLP-GRTFRLNLLVCPPYNADFDGDEMNLHVPQTEEARAEAKELMLVQRHILSP 491
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGK 545
+ G ++ QD ++ +LL + LL + ++ ++ P+ S W+GK
Sbjct: 492 RYGGPIIGGLQDYISGGYLLTSKATLLEKEDVIEVLSVTGYKEELPEPAIYSPKEFWTGK 551
Query: 546 QLFSMLLPPDFEYTFPSKDVYISGGKLISAE----GSSWLRDYEGNL------------- 588
QL S+ LP DF T +K I+ GKL + S++ +G +
Sbjct: 552 QLVSLFLPKDF--TLKTK-ASINAGKLKCEDEDCLNDSYIVIKKGKMHTGVIDKKSIGAQ 608
Query: 589 -----FQYLIKRYRDKVLDFLYAAQ-EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
+ ++ K Y ++ ++ ++ G T+SL D+ ++ + +E
Sbjct: 609 QPESFYHWITKEYGSDYARYISDVMFKMFIRYIEKHGFTMSLDDVEISEEA------REE 662
Query: 643 IFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
I L++A+D N ++M + + L E+ + E LS + + + ++D
Sbjct: 663 IRKILKKAEDDVNELIRMMEEGRLEPLPGRTIEETLETKIMERLSKARDDAGEYAANNLD 722
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPH 761
F + F M + G++GN+L L Q S LG Q S R
Sbjct: 723 IFNNAF------------------IMARTGARGNILNLTQMSATLGQQ------SIRG-E 757
Query: 762 ELSCAAWNR----LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
++ NR + D + ++ + V NSF TGLNP+E F H+ R+ D
Sbjct: 758 RINRGYRNRPLPHFKENDKSPASRGF-----VYNSFRTGLNPVELFYHAAGGRE-GLVDT 811
Query: 818 A---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
A G + RRL+ + D+ YDG+ R G +VQF Y
Sbjct: 812 AVRTSQSGYMQRRLINALLDVRIEYDGSARLPDGT-VVQFKY 852
Score = 51.2 bits (121), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
+ GI L + + E ++S ++I V +PRLG+ P +C CG
Sbjct: 8 IKGIKLSVLSPDEIRRMSKVQIITAETYDDDGLPIQGGVMDPRLGVIEPGQKCPVCG-NT 66
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
++C GHFG I+ ++H ++ +I LL C KC I
Sbjct: 67 MQSCPGHFGHIELAKPVIHIGYVKEIYDLLRGTCWKCGRI 106
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 265/582 (45%), Gaps = 71/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 347 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYG 406
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 407 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQP 462
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 463 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 521
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
K +++ Q+ R ++ + QD+L + + D+ + + M L + P +
Sbjct: 522 PKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILK 581
Query: 538 KDSVWSGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAE-GSSWL 581
+W+GKQ+F++++P D E F + V I G+L++ L
Sbjct: 582 PRPLWTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTL 641
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + + D FL Q ++ WL G T+ + D +A S KI
Sbjct: 642 GTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT-IADSSTMEKI-- 698
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+ N + + D F D E R+++ ++E + + L++A
Sbjct: 699 ---------NETISNAKTAVKDLIRQFQGKELDPEPGRTMRD---TFENRVNQVLNKARD 746
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
DA + A K ++ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 747 DA--------GSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIP 795
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 796 FGFDGRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 850
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 851 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 891
>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
Length = 1008
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 152/577 (26%), Positives = 269/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 267 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 326
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR P H S+
Sbjct: 327 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRHPXXHKESM 382
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 383 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 441
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V LS Q+ + ++ P + P + ++W+G
Sbjct: 442 QRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 501
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P S++ + ISGG+L+ + G +++
Sbjct: 502 KQILSLIIPTGMNILRVSEEGFSPLNDDGLLISGGELMYGLLHKKIVGASGGGVIHIVFN 561
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D H+ +++ ++
Sbjct: 562 EKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIENA 608
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V + SA ++E SL G ++ ++E + S AL++A DA ++
Sbjct: 609 VNNQKAEV---LEIPRSATENE-LESLPGMNVRETFESKVSKALNKARDDAGAVTEKSLK 664
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 665 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 712
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 713 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 762
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 763 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 798
>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
Length = 1016
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 154/579 (26%), Positives = 269/579 (46%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L + +
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIEKLHQXVKNGPNDH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + ++ P P I K W
Sbjct: 450 QRNGPLMGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPK--W 507
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------VYISGGKLISAEGS-SWLRDYEGNLFQYL 592
+GKQ+ S+++PP T S + + +SGG+L+ S + G + +
Sbjct: 508 TGKQIISLVVPPGLNLTRFSSEGLCPINDDGLMVSGGELMYGLFSKKSVGAASGGVIHII 567
Query: 593 I-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + +F AQ V+ WL G ++ + D ++ +++ +
Sbjct: 568 FNEKGPEAATNFFNGAQTVVNHWLLHNGFSIGIGDTIPDRNT-------------IKQIE 614
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
D + Q+ V SA ++E L G ++ ++E + S AL++A DA
Sbjct: 615 DAVSKQKADV---AEITRSATENE-LEPLPGVNVRETFESKVSKALNKARDDAGTVTEES 670
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHEL 763
+++L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 671 LKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH-- 720
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 721 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 768
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 769 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 152/574 (26%), Positives = 266/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L ER+++ N +RL+ + R +
Sbjct: 331 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVR-RPVYP 389
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 390 SAFYIHHPNGTSTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 449
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 450 RVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 508
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ + P + K +W+GKQ+FS
Sbjct: 509 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLK--PRPLWTGKQVFS 566
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYE-GNLFQYLI-KRYRD 598
++LP P FP D + I G+L+ + + G+L + +R D
Sbjct: 567 LILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSD 626
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + +L G +V + D + + + M+E+ RE +
Sbjct: 627 EVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQ---MNEVLVKTRENVEKIGAAA 683
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N + L + M L S+E ++AL++ +A K +++
Sbjct: 684 NNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 724
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 725 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 772
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 773 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 825
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA +++QF Y +G
Sbjct: 826 KLIKALEDVHAAYDGTVRNA-NQELIQFMYGEDG 858
Score = 45.1 bits (105), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++I+ TR+ + + C GI+A L L A G NI H I+ +T+ G
Sbjct: 1329 NIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRG 1388
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S +S P ++ F + AA G D ++G L G
Sbjct: 1389 YLMAVSRVGI----NRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQA 1444
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1445 RIGT-GLFDLV 1454
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 155/584 (26%), Positives = 271/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N +RL + +
Sbjct: 264 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIDRLKELVEYG 323
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 324 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDYVLFNRQP 379
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 380 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 438
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P + K
Sbjct: 439 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAVLK 498
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V I G+L++
Sbjct: 499 --PRPLWTGKQVFNLIIPKQINLLRTSAWHAESETGFITPGDTQVRIERGELLAGTLCKK 556
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL ++ + D + +
Sbjct: 557 ALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD------TIADAA 610
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ +H L ++E R++ S+E + + L++A
Sbjct: 611 TMEKINDTITKAKNEV--KELIKAAHEKQL----EAEPGRTMME---SFENRVNQVLNKA 661
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 662 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 710
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ DN ++ + VENS+L GL P E F H++ R+
Sbjct: 711 IPYGFINRTLPHFTQDDNGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 765
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 766 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 808
>gi|398020383|ref|XP_003863355.1| RNA polymerase ii largest subunit [Leishmania donovani]
gi|322501587|emb|CBZ36666.1| RNA polymerase ii largest subunit [Leishmania donovani]
Length = 1662
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 154/574 (26%), Positives = 265/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N N +RL+ + R
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQ-RTTYP 382
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 383 SANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRV 442
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 443 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 501
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + + +Q + ++ L P I K +W+GKQ+FS
Sbjct: 502 CMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILK--PRPLWTGKQIFS 559
Query: 550 MLLP----PDFEY---TFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLI-KRYRD 598
++LP P Y FP D I G L+ A + G+L + +R D
Sbjct: 560 LILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSD 619
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + + +V + D + + M+ + + R++ +
Sbjct: 620 EVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKE---MNNVLHKTRQSVEKIGAAA 676
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N +L + M+ L S+E ++AL++ +A K +++
Sbjct: 677 NNGKLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 717
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 718 -----RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 765
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ VE GL P E + H++ R+ G L R
Sbjct: 766 --FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQR 818
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ +YDGTVRNA +++Q +Y +G
Sbjct: 819 KLVKALEDVHASYDGTVRNA-NQELIQLAYGEDG 851
Score = 46.6 bits (109), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++ID++++ + I GI+A + L+ L A G NI H I+ +T+ G
Sbjct: 1319 NIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRG 1378
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S S P ++ F + AA G D ++G +L G
Sbjct: 1379 YLMAVSRTGI----NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQA 1434
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1435 RIGT-GLFDLL 1444
>gi|146095454|ref|XP_001467585.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
gi|134071950|emb|CAM70645.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
Length = 1662
Score = 187 bits (476), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 153/574 (26%), Positives = 265/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N N +RL+ + R
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQ-RTTYP 382
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 383 SANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRV 442
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 443 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 501
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + + +Q + ++ L P I K +W+GKQ+FS
Sbjct: 502 CMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILK--PRPLWTGKQIFS 559
Query: 550 MLLP-------PDFEYTFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLI-KRYRD 598
++LP P + FP D I G L+ A + G+L + +R D
Sbjct: 560 LILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSD 619
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + + +V + D + + M+ + + R++ +
Sbjct: 620 EVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKE---MNNVLHKTRQSVEKIGAAA 676
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N +L + M+ L S+E ++AL++ +A K +++
Sbjct: 677 NNGKLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 717
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 718 -----RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 765
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ VE GL P E + H++ R+ G L R
Sbjct: 766 --FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQR 818
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ +YDGTVRNA +++Q +Y +G
Sbjct: 819 KLVKALEDVHASYDGTVRNA-NQELIQLAYGEDG 851
Score = 46.6 bits (109), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++ID++++ + I GI+A + L+ L A G NI H I+ +T+ G
Sbjct: 1319 NIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRG 1378
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S S P ++ F + AA G D ++G +L G
Sbjct: 1379 YLMAVSRTGI----NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQA 1434
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1435 RIGT-GLFDLL 1444
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 269/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 400 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 455
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 456 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 514
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P I +WSG
Sbjct: 515 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAIIKPKPLWSG 574
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQ+ SM +P KD + + G + + G L ++
Sbjct: 575 KQMLSMAIPKGIHIQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 634
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D + + M +I ++EA+
Sbjct: 635 REKGPQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADAST------MKDITKTIQEAKQ 688
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L D E +L+ S+E S L+QA A + +++
Sbjct: 689 --KVQEIILDAQHNKL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKD 739
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 740 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 788
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 789 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 843
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 844 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 872
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + +C +CG +D C GHFG I+ + H F++ I K+ SIC C
Sbjct: 54 LNDPRLGSIDRNFKCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHC 111
>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
Length = 863
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 156/568 (27%), Positives = 264/568 (46%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A L E + +N RL+ + E
Sbjct: 151 LMGKRVDFSARTVISGDPNLELDQVGVPISIARTLSYPEIVTPFNIHRLTEYVRNGPNEH 210
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 211 PGAKYVIRDSG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 266
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 267 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSP 325
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +W+G
Sbjct: 326 QSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLYWIPNWDGVIPPPAVLKPKPLWTG 385
Query: 545 KQLFSMLLPPD-----FEYTFPSKD----VYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQL SM +P E S + + + G + + G L +++
Sbjct: 386 KQLLSMAIPKGIHIQRLESNLLSPNDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMRE 445
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V L+ Q+V+ WL G ++ + D S + M + + EA+
Sbjct: 446 KGPQVCAQLFGNIQKVVNFWLLHNGFSIGIGDTIADSET------MKTVTTTIEEAK--T 497
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q++++D+ N L + E +L+ S+E S L+QA A + +++L
Sbjct: 498 KVQEIILDAQRNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKDL- 549
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M +GSKG+ + + Q S C+G Q R P S
Sbjct: 550 -------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSDRTLPHFTKD 599
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K +I ENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 600 DYSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 654
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 655 EDIMVHYDGTTRNSLGD-IIQFVYGEDG 681
>gi|397135882|gb|AFO11436.1| RNA polymerase I, partial [Spathaspora passalidarum]
Length = 872
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 157/570 (27%), Positives = 269/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+I+
Sbjct: 269 MCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIISP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + Q+ + + P+ + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDTYIEFDQVMNMCYWIPNWDGVIPPPAIVKPKPLWTG 387
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P +KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D +A S M +I ++EA+
Sbjct: 448 REKGPQVCAQLFSSIQKVVNYWLLHNGFSIGIGDT-IADAST-----MKDITTTIQEAK- 500
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 501 -TKVQEIILDAQQNRL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 685
>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
macrosporum]
Length = 808
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 153/582 (26%), Positives = 265/582 (45%), Gaps = 83/582 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + ++G+P +A+ + E++ +N E L+ + E
Sbjct: 271 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIAKNMTFPEKVTPFNIEVLTKTVENGPNEH 330
Query: 377 -GELYVCRKGGLVRIRRID---------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G +V R G RID AL++G I+ R + D D+V+ NR PS+H S++
Sbjct: 331 PGAKFVIRDNG----DRIDLRHARAGAIALQVGYIVERHMRDDDVVIFNRQPSLHKMSMM 386
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
VKV+P S+ +N +P++ DFDGD ++ ++PQ+ E+ EL + KQ+++ Q
Sbjct: 387 GHRVKVMPYSTF-RLNLSVTTPYNADFDGDEMNLHLPQSYETAAEIVELCIVPKQIVSPQ 445
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWS 543
++ + QD+L + L M L M+ P +P I K +W+
Sbjct: 446 KNAPVMGIVQDTLCGVRKFTKRDTFLDMDIMMNLLMWVPDWDGTLPTPCIIK--PIPLWT 503
Query: 544 GKQLFSMLLP----PDFEYTFPSKD----------VYISGGKLI------SAEGSSWLRD 583
GKQ S+++P + P K+ V I G+L+ GSS
Sbjct: 504 GKQAMSLIIPNINLTAYHAAHPDKEVGDNSPGDTKVLIEHGELVMGILCKKTVGSSA--- 560
Query: 584 YEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
G + +++ + F AAQ V+ WL RG ++ + D + S M +I
Sbjct: 561 GGGIIHTAVMEHGPETAKKFFNAAQRVVNYWLLHRGFSIGIGDTIADARS------MTDI 614
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE---HLSYEKQRSAALSQASV 700
+++A+ +++ + L + +S + + L+ + ++ +Q S+
Sbjct: 615 NNTIQQAK--TQVSEIIAMAQQGRLEAQPGMTIRQSFEAKVNHELNNARDKAGKAAQDSL 672
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
+F N++ M AGSKG+ + + Q + C+G Q+ R P
Sbjct: 673 PSF------------------NNVKQMVVAGSKGSYINISQMTACVGQQNVEG---RRIP 711
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ D++ A+ + VENS+L GL P E F H++ R+
Sbjct: 712 YGFQYRTLPHFVKDDHSPEARGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 766
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRNA G+ +VQF Y +G
Sbjct: 767 AETGYIQRRLVKALEDVMVKYDGTVRNAQGD-VVQFCYGEDG 807
>gi|327242109|gb|AEA40833.1| RNA polymerase II largest subunit [Monocercomonas colubrorum]
Length = 1019
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 181/656 (27%), Positives = 293/656 (44%), Gaps = 73/656 (11%)
Query: 233 HRVTEVPHAFSHEKKLFFDNWTRHLKK-MVDYRGRDIELSHLVQDCLKISKLHLDKSSRK 291
H++ + +H KKL DN KK +D I ++ + D K L +++ K
Sbjct: 200 HKLASIVQVNNHLKKLIADNVQLVAKKEYIDLLQYHIS-TYFIND-----KPSLQRATTK 253
Query: 292 DSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351
+ R K I I+ + GKR + R V++ DP+I + ++G+P ++A+ L
Sbjct: 254 NG---RPIKAISQRLKGKEGHIRGHLSGKRVNFSARSVISPDPSISIDQVGVPLEIAKVL 310
Query: 352 QISERLNSWNWERLSVCI-SFRLLEKGELYVCRKGG----LVRIRRIDALELGD--IIYR 404
E + + N + L + + + G Y+ G L AL L D I+ R
Sbjct: 311 TFPEVVTARNRDYLQKLVHNGPDHQDGANYIITPTGIRINLAVTEERSALHLADNAIVER 370
Query: 405 PLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQ 464
L + DIV+ NR PS+H S++ ++P S +N +P++ DFDGD ++ ++PQ
Sbjct: 371 HLREDDIVIFNRQPSLHKMSMMGHRAHLMP-GSTFRLNLCVTTPYNADFDGDEMNLHVPQ 429
Query: 465 AIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC 524
+ AR E+ ++ + Q+I QS + ++ L QD+L A L+ L+ Q+ L M+
Sbjct: 430 SQSARAEVKHIMLVPNQIITPQSNKPIIGLVQDALLACRLMTLRDTFLTRNQVMNLMMWI 489
Query: 525 PHR-FLSPDIFKISKDSVWSGKQLFSMLLP--------PDFE----YTFPSKDVYISGGK 571
R + P + +WSGKQ+FS+ LP D + ++ K V I GK
Sbjct: 490 KKRDVILPPPCILKPQQLWSGKQVFSLFLPEINHDGYSSDVKDKSWLSYDDKRVIIRNGK 549
Query: 572 LISA-EGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
L++ S + E +L +I + +D DFL Q V+ WL RG ++ + D
Sbjct: 550 LLAGILDSRTVARSEKSLVHVIINSWDKDIARDFLNQTQLVVNNWLESRGFSIGIIDCIA 609
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDS--ESTRSLQGEHLSY 687
+ + I + EI L+E D L + M+ K+S + S + ++
Sbjct: 610 SEKTL---IKVSEILDNLKEKVDNITRSALSGTMTIQPGMTLKESFEQEVNSNSNDFIN- 665
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
+S A+ Q FW NSL+ M AGSKG+ + + Q C+G
Sbjct: 666 ---KSGAIVQNDAR-----FW-------------NSLMQMVAAGSKGSKINISQILACVG 704
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q+ R P+ D AK + E+S++ GL P E F HS+
Sbjct: 705 QQNVEGK---RVPNGFKNRTLPHFFKDDMGLEAKGF-----CEHSYIQGLTPPEFFFHSM 756
Query: 808 TSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R + D A G + RRL FM C YDGTVRN+ N+I+QF Y +G
Sbjct: 757 GGR-TGIIDTACKTSDTGYIQRRLCKFMESHCVQYDGTVRNSL-NEIIQFVYGCDG 810
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 162/592 (27%), Positives = 274/592 (46%), Gaps = 93/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N RL + +
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNG 411
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD +L NR PS+
Sbjct: 412 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSL 467
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 468 HKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 526
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 527 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVLPQPAILK-- 584
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWL 581
WSGKQ+ SM+LPP KD V + GG+L+ S +
Sbjct: 585 PRPRWSGKQMISMVLPPGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTV 644
Query: 582 RDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y +V + F AQ V+ WL G ++ + D + + +KI
Sbjct: 645 GASGGGVVHTIFNEYGPEVAMSFFNGAQTVVNYWLLHNGFSIGIGDT-IPDLATIQKI-- 701
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
++ ++ VD+ ++A +E+T +L G ++ ++E + S AL+
Sbjct: 702 ----------ENAVRVRKEEVDT-----ITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A +A A + KD N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 747 ARDEA---------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRI 797
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 798 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 843
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 844 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDG 894
Score = 47.4 bits (111), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 266/584 (45%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGARYIIREDG----QRLDLRFLKKSSDRHLELGYKVERHLNDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHKIRIMPFSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 443 PKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKIPAPTILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDF---------------EYTFPSKDVYISGGKLISAE-GSS 579
+W+GKQLFS+++P E T V I G+LIS
Sbjct: 503 --PKPLWTGKQLFSLIIPKQINLIRFSAWHLDSEVGEITPGDTVVRIEKGELISGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 561 TLGTSGGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGD------TIADAA 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ + ++ + A+ +T S+E + + L++A
Sbjct: 615 TMEKINESIAKAKNEV---KELIKMAQEKQLEAEPGRTTME------SFENRVNQVLNRA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A + S+ N++ AM AGSKG+ + + Q C+G Q+ R
Sbjct: 666 RDDA--------GSSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPFGFVDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ +++F Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIEFLYGEDG 812
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 208/903 (23%), Positives = 386/903 (42%), Gaps = 155/903 (17%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR G+ + C +C A + C GHF ++ + H FL+ K+L +C C +
Sbjct: 54 DPRQGVIDRRGRCMTC-AGNLTDCPGHFAHLELAKPVFHIGFLTKSLKILRCVCFYCGRL 112
Query: 106 RKER---------QKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVE 156
++ +K +G+++K + C + + + +
Sbjct: 113 LIDKSNPRVIDILKKTSGNAKKRLALIYDLCKSK----------SVCEGAAEKEEGLPDD 162
Query: 157 IDEKLSKKNKKLPDDYWGFIP--------FDAQQEEN---SVKPNRKVLSCKQVSYLLKD 205
+D+ +S + KK+P + P +A+ ++N + + +L+ ++V + K
Sbjct: 163 VDDPMSGE-KKIPAGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQ 221
Query: 206 VDPSIREEFILSKDAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLK 258
+ + + ++ D F + PV P R V F K D+ T L
Sbjct: 222 I--TDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVV--TFGSAKNQ--DDLTHKLS 275
Query: 259 KMVDYRGR------DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKN 301
++ + + +H++ D +++ + H L +++K ++ K
Sbjct: 276 DIIKTNQQLQRNEANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQ 335
Query: 302 IDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWN 361
+ G I+ ++GKR D R V+T DPN+ + +G+P +A+ L E + +N
Sbjct: 336 -RLKGKEGR--IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFN 392
Query: 362 WERLSVCISFRLLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGD 410
++L ++ + G Y+ R+ G R+D L+ G + R + DGD
Sbjct: 393 VDKLQELVNRGDTQYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGD 448
Query: 411 IVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARV 470
I++ NR P++H S++ VK+LP S+ +N SP++ DFDGD ++ ++PQ++ R
Sbjct: 449 IIVFNRQPTLHKMSMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRA 507
Query: 471 ELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---R 527
E+ E+ + +QLI Q+ + ++ + QD+L A ++ + V + M L M+ P +
Sbjct: 508 EIEEICMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWSFMMDLLMYLPTWDGK 567
Query: 528 FLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYIS 568
P I K +W+GKQLFS+++P PD E + P K V I
Sbjct: 568 VPQPAILK--PKPLWTGKQLFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVLIE 625
Query: 569 GGKLISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSD 626
G+L+S S + GNL + ++ Y+ Q V+ WL G T+ + D
Sbjct: 626 HGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLLRVGHTIGIGD 685
Query: 627 LYLASHSCSRKILMDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
+A H+ +I +++A QD + + + + ++ + + L
Sbjct: 686 T-IADHATYL-----DIQNTIKKAKQDVVDIIEKAHNDDLEPTPGNTLRQTFENKVNQIL 739
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ + R+ + +Q S+ F N+ +M +GSKG+ + + Q C
Sbjct: 740 NDARDRTGSSAQKSLSEF------------------NNFKSMVVSGSKGSKINISQVIAC 781
Query: 746 LGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
+G Q+ P FR PH + D +K + VENS+L GL P
Sbjct: 782 VGQQNVEGKRIPFGFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTP 827
Query: 800 LECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E F H++ R+ G + RRL+ M + YDGTVRN+ Q+VQ Y
Sbjct: 828 SEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA-QMVQLRYG 886
Query: 858 IEG 860
+G
Sbjct: 887 EDG 889
>gi|397135894|gb|AFO11442.1| RNA polymerase I, partial [Schwanniomyces occidentalis]
Length = 872
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 163/594 (27%), Positives = 278/594 (46%), Gaps = 66/594 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEFVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID AL+ G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+I+ QS + ++ + QD+L + + + Q+ + + P+ + P I
Sbjct: 324 IISPQSNKPVMGIVQDTLCGIRKMTLRDNFIEYDQVMNMLYWIPNWDGVIPPPAIIKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ SM +P KD + + G + + G L
Sbjct: 384 LWTGKQILSMAIPKGIHLQRFDEGKNLLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGLI 443
Query: 590 QYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ +V L+++ Q+V+ WL G ++ + D +A S R ++ ++
Sbjct: 444 HTVMREKGPQVCAQLFSSIQKVVNFWLLHSGFSIGIGDT-IADASTMR-----DVTSTIQ 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA++ Q++++D+ +N L + E +L+ S+E S L+QA A +
Sbjct: 498 EAKNKV--QEIILDAQLNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEM 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
++++L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 549 NLKDL--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSY---NIEGTSTPTGEIGDQPVGSLS 877
R++ + D+ YDGT RN+ G+ I+QF Y I+GT I P +S
Sbjct: 653 RIIKALEDIMVHYDGTTRNSLGD-IIQFIYGEDGIDGTQVEKQSIDSIPGSDVS 705
>gi|300122349|emb|CBK22921.2| unnamed protein product [Blastocystis hominis]
Length = 1576
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 167/587 (28%), Positives = 263/587 (44%), Gaps = 68/587 (11%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR + R V++ DPN+ ++E+G+P VA +L ER+ ++N ERL +
Sbjct: 331 GKRVEFSGRTVISPDPNLSIEEVGVPIFVAMKLTYPERVTAFNIERLRGMVRNGASRYPG 390
Query: 379 LYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G I R L++GDI+ R L DGD+ L NR PS+H S+++ V
Sbjct: 391 ANMIRPGNSRAISLMYGDRERAAQNLQIGDIVERHLIDGDVSLFNRQPSLHRMSIMSHRV 450
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP + N CSP++ DFDGD ++ +IPQ AR+E EL+ + ++N +SG
Sbjct: 451 KVLPWKTF-RFNECDCSPYNADFDGDEMNIHIPQTEEARIEARELMGIKHNIVNPRSGEP 509
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSM 550
L++ QD +T A +L + V LS L +L F +P + W+GKQ+FSM
Sbjct: 510 LITATQDFITGAFVLTQRDVFLSRLDFCRLVAFLSDAQETPAML-------WTGKQVFSM 562
Query: 551 LLPPD-FEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQE 609
LL P+ E S ++ ++ + + W+ +G Y++ + + L +
Sbjct: 563 LLKPNPQEGVVLSLEMKAKNFQMSKVDSNLWMCPQDG----YVVIQNS----ELLCGNID 614
Query: 610 VLCEWLSVRGMTVSLSDLYLASHSC---------SRKILMDEIF-YGLREAQ-DTCNFQQ 658
C + +G+ L + + + + LMD F GL + D QQ
Sbjct: 615 KNCVGGNKKGLVCVLIRDFTPEDTVKALGRLTKLTSRFLMDYGFTIGLDDVSPDERLLQQ 674
Query: 659 LMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV--DAFKHVFWDIQNLAYK 716
+ N+ AK E+ L+ +A + S+ + I +
Sbjct: 675 MHEIVAKNY---AKVDETIHQYNSGKLALRPGCNAEQTLESICSGLLSDIRDTIGKMCMT 731
Query: 717 YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDN 776
K N L M GSKG+ + + Q C+G Q + NR+ G
Sbjct: 732 NLPKTNYPLIMATCGSKGSAINICQMIYCVGQQ---------------VVSGNRIPDGFI 776
Query: 777 TECAKSYIPSA-------VVENSFLTGLNPLECFIHSVTSRDS---SFSDNADLPGTLTR 826
++P+A V NSF +GL P+E F H++ R+ S AD G + R
Sbjct: 777 QRSLPHFLPNAKEPNAKGFVANSFYSGLTPMEFFFHTMGGREGLVDSAVKTADT-GYMQR 835
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
RLM + DLC +YD TVR A N+IVQ Y + + E + PV
Sbjct: 836 RLMKALEDLCISYDNTVRTA-DNEIVQLVYGDDSLNASFMEANNGPV 881
Score = 46.6 bits (109), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + RLG+ + + C +CG K+ C GHFG I + H +++ I +L SIC KC
Sbjct: 27 VLDRRLGVSSKSEICQTCG-KNIATCPGHFGTIHLVMPVFHIGYINMIIGILRSICKKC 84
>gi|124485981|ref|YP_001030597.1| DNA-directed RNA polymerase subunit A' [Methanocorpusculum
labreanum Z]
gi|124363522|gb|ABN07330.1| DNA-directed RNA polymerase, subunit A' [Methanocorpusculum
labreanum Z]
Length = 889
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 224/895 (25%), Positives = 363/895 (40%), Gaps = 152/895 (16%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG+ +P C +CG K + C GHFG I ++H + I KLL C C
Sbjct: 45 LMDPSLGVIDPGLRCKTCGQK-QGDCPGHFGHIDLAKPVIHVGYTRLIRKLLRVTCRDCG 103
Query: 104 TIRKERQK---------------GAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLS 148
+ ++++ G ++ R+C YC +FK++ + +
Sbjct: 104 RLLLDKEEIERFSALEDDPYSAETIGEKDIKKERICPYCGDQ--------QFKINFEKPT 155
Query: 149 GKTAIIVEI--DEKLSKKNKKL------------PDDYWGFIPFDAQQEENSVKPNRKVL 194
I+ E+ D K+ K +KL PDD + D + +P VL
Sbjct: 156 SFVEIVTEMGEDGKVHKSERKLTSADIRERLEKIPDDDLRLLGIDPE----VARPEWTVL 211
Query: 195 SCKQVSYLLKDVDPSI-REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNW 253
+ V + V PSI E S+D K + N R E A + + + D W
Sbjct: 212 TVLPVPPVT--VRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQDAGA-PQLIIEDLW 268
Query: 254 TRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWI 313
+ Y L + V C +R S + + + G
Sbjct: 269 ELLQYHVTTY------LDNEVAGC---------PPARHRSGRPLKTLSQRLKGKDG--RF 311
Query: 314 KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL 373
+ + GKR + R V++ DPN+ + E+GIP +A + + R+ N E + I
Sbjct: 312 RGSLSGKRVNFSARTVISPDPNLSIGEVGIPLAIANEMSVPVRVTKQNLEDMRALIRIGP 371
Query: 374 LEK------GELYVCRKGGLVRIRRI-----------DALELGDIIYRPLTDGDIVLINR 416
G YV R G RIR I + +E G I R L DGDIVL NR
Sbjct: 372 HRPTLRDPCGANYVNRPDGR-RIRLIAGEEGNCDTVAEMIEPGWKIDRQLRDGDIVLFNR 430
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
PS+H S+++ +KV+ +NP C P++ DFDGD ++ ++PQ AR E LV
Sbjct: 431 QPSLHRMSIMSHHIKVMN-GRTFRLNPAVCPPYNADFDGDEMNLHVPQTEEARAEAELLV 489
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKI 536
A+ + +++ + G ++ D ++ LL + + L + L P+ K+
Sbjct: 490 AVQENILSPRFGGPIIGGLHDHISGIFLLTNQLKWYTKSEFLYLLKYTAMEHL-PEPGKV 548
Query: 537 SKD-SVWSGKQLFSMLLPPDFEY----------------TFPSKDVY--ISGGKLISAE- 576
WS KQ FSM+LP D TF D + I G+LIS
Sbjct: 549 ENGIPYWSNKQAFSMILPKDVNMFYKATCCRNCDPCTKNTFCPNDAFVRIVDGELISGTI 608
Query: 577 GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEW--LSVRGMTVSLSDLYLASHSC 634
+ +G + +I+ L A+E + + LS+R + LY S+
Sbjct: 609 DKKSVGAMDGAILNRIIR------LHGTQRAKEYIDDLTKLSIRAIM-----LYGFSYGI 657
Query: 635 SRKILMDEIFYGLREAQDT-----CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEK 689
+ L E + +R+ DT N + H+ M + E T +Q K
Sbjct: 658 NDTDLGKEEYKQIRDVLDTAEHDVANRINIFEQGHLE-PMPGRTPEETLEMQ-----VMK 711
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ 749
+ A + A +H+ + +NS + M +G++G++L + Q + C+G Q
Sbjct: 712 ELGKARDRTGDIASRHLGF------------ENSAVVMAVSGARGSMLNIAQMAGCIGQQ 759
Query: 750 HSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTS 809
R + + + R G + V NS+ +GLNP E F H++
Sbjct: 760 AVRGERIVRGYEDRTLPHFKRSDKGADAH--------GFVRNSYKSGLNPTEFFFHAIGG 811
Query: 810 RDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R+ D A G L RR++ ++DL AYDGTVR+ G +I+QF Y +GT
Sbjct: 812 RE-GLVDTAVRTSQSGYLQRRMINALQDLKVAYDGTVRST-GGKIIQFVYGEDGT 864
>gi|154342676|ref|XP_001567286.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064615|emb|CAM42715.1| RNA polymerase ii largest subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1662
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 160/597 (26%), Positives = 275/597 (46%), Gaps = 79/597 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N N +RL+ + R+
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTDFVQ-RVTYP 382
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 383 SANYVIRPNGNVTKLALVKDRSAVNLDVGDVVERHIIDGDVVLFNRQPTLHRMSMMGHRV 442
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 443 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 501
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + + +Q + ++ L P I K +W+GKQ+FS
Sbjct: 502 CMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILK--PRPLWTGKQIFS 559
Query: 550 MLLP----PDFEY---TFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLI-KRYRD 598
++LP P Y FP D I G L+ + + G+L + +R D
Sbjct: 560 LILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGSITKGVVGAAPGSLIHVIFNERGSD 619
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q V + +V + D + + M+ + + R++ +
Sbjct: 620 EVAKFINGVQRVTTYFNYCFAFSVGVQDTVADATTLKE---MNNVLHKTRQSVEKIGAAA 676
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N +L + M+ L S+E ++AL++ +A K +++
Sbjct: 677 NNGKLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 717
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 718 -----RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 765
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ VE GL P E + H++ R+ G L R
Sbjct: 766 --FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQR 818
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ--PVGSLSACAI 881
+L+ + D+ +YDGTVRNA +++Q Y +G E G+Q P+ ++ C +
Sbjct: 819 KLVKALEDVHASYDGTVRNA-NQELIQLVYGEDGLDGARIE-GNQAFPIPHMTNCEL 873
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++ID+ ++ + I GI+A + L L A G NI H I+ +T+ G
Sbjct: 1319 NIIDFVKTSSNKIPEVVSVLGIEAARRKLLFELREAYLAYGLNINYRHYTILVDTMCQRG 1378
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S S P ++ F + AA G D ++G L G
Sbjct: 1379 YLMAVSRTGI----NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANLVLGNQA 1434
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1435 RIGT-GLFDLM 1444
>gi|387596460|gb|EIJ94081.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm1]
Length = 1612
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 211/889 (23%), Positives = 385/889 (43%), Gaps = 122/889 (13%)
Query: 31 EKLSVMEIGAVSE--VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFL 88
E ME G E + + RLG CS+CG + +C GHFG+I+ + H ++
Sbjct: 32 EHPETMESGVPKEGGLVDLRLGTSERGFLCSTCGHRS-DSCVGHFGYIELAKPVFHIGYI 90
Query: 89 SDIAKLLNSICPKCKTIRKER---QKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSK 145
I K+L S+C C +R E+ ++KE+ R Y M + S+
Sbjct: 91 GKIKKVLESVCFFCSKLRVEKSILHSPKPRTQKERKRRLNYIWNLAKNRAVCMGELVESE 150
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
D E ++ +N++ G Q+ E S + + +LS ++V +L+
Sbjct: 151 DNP-------EEKQRTGCENRQPTIRKEGLHLLAFQKGEESSE-GKTMLSAEKVLEILRR 202
Query: 206 VDPSIREE--FILSKDAP---FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 260
+ E F L K P ++ PV P R P D+ T L +
Sbjct: 203 IPEDDIEALGFDLEKARPEWMIIRVLPVPPPQVR----PSIVMEGSLRCEDDLTHKLADI 258
Query: 261 VD-------YRGRDIELSHLVQDCLKISKLHL------DKSSRKDSAEV--RQKKNIDIS 305
+ Y + H+++D ++ + H+ D S + S + R K I
Sbjct: 259 IKASNNLKRYEQEGVA-GHIIRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRAR 317
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++ ++GKR D R V+T DPNI + E+G+P ++A L ER+ +N ++L
Sbjct: 318 LRGKEGRVRGNLMGKRVDFSARTVITADPNISMNEVGVPEEIARMLTFPERVTEYNIDKL 377
Query: 366 SVCISFRLLEKGEL------YVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDI 411
+ +L+ +G YV R G ++ID L+ G ++ R L++GD
Sbjct: 378 T-----QLVHRGPYNHPGANYVIRDDG----QKIDLRFHKGEVHLQCGYVVERHLSNGDT 428
Query: 412 VLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVE 471
VL NR PS+H S++A +V+ S+ +N +P++ DFDGD ++ ++PQ+I A+ E
Sbjct: 429 VLFNRQPSLHKMSMMAHRARVMKYSTF-RLNLSVTAPYNADFDGDEMNLHLPQSIPAQAE 487
Query: 472 LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH--RFL 529
L EL ++K +++ QS + ++ + QD+L + L + L+ Q+ L + + +
Sbjct: 488 LKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFLTRSQVMHLHYAIDNGSKPI 547
Query: 530 SPDIFKISKDSVWSGKQLFSMLLP--------------PDFEYTFPSKDVYISGGKLISA 575
P I + + +++GKQ+FS LP ++ +V I G+L++
Sbjct: 548 KPTILRPA--VLYTGKQIFSATLPDVTYKGLHSEHVHGKNYRANPMDSEVVIKNGELLAG 605
Query: 576 E-GSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWL-SVRGMTVSLSDLYLASH 632
+ G L + + R +DF+ A Q + WL + +V + D
Sbjct: 606 IICKKTVGTASGGLIHVIANDFPRSVCVDFIDALQRAISTWLMAYETFSVGIGDTIADPS 665
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQ 690
S MD I + +A+ + + ++V + N L L G + S+E
Sbjct: 666 S------MDMIKEAIEQAKG--DVKDIIVQAESNNL---------ERLPGLTMRESFEAA 708
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
+ AL++A + ++++ N++ M +GSKG+ + + Q S C+G Q
Sbjct: 709 VTLALNKARDTSGTSTQKNLRS--------QNNIKQMVVSGSKGSYINISQMSACVGQQS 760
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
R + + D T ++ +I S S++ GL+P+E F H++ R
Sbjct: 761 VEGK---RILNGFRDRSLPHFTKDDFTAESRGFISS-----SYVAGLSPVEFFFHAMGGR 812
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
+ G + RRL+ + D +D +VR+ G+ ++Q +Y
Sbjct: 813 EGLIDTAVKTAETGYIQRRLIKALEDAQVRHDKSVRDGEGH-VIQCAYG 860
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 159/402 (39%), Gaps = 76/402 (18%)
Query: 873 VGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKK----SNADQT-----MSL 923
VG+L+A +I E A L T L + + + G + NA QT +++
Sbjct: 1087 VGTLAAQSIGEPATQMT------LNTFHLAGVASTVTRGVPRLKEIINAAQTIKTPSLTI 1140
Query: 924 FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVR 983
+L ++ RH E GA + +E L DI+ S IIY P ++K +I + +
Sbjct: 1141 YLKEEI---RHTLE-GAKRAQQEIERCYLKDILLKSEIIYDPTMRAVKADEDFIFAYGIL 1196
Query: 984 KEI--------MKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKEC 1035
M R L +++D R + A+T L S + C M +
Sbjct: 1197 DPTVYTPDSPWMLRLELSRSAMVDRGIRIEQVAKT-LSHS------TTYRC----MHSDH 1245
Query: 1036 NDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKV---DILWKDKQKAS 1092
N + + + N + +ET +M VKG +IK+V +I +DK+
Sbjct: 1246 NSSEQIIRCELPNNEEALRKIETGVSCIM-------VKGMPKIKRVFISEIGTEDKK--- 1295
Query: 1093 KSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGID 1152
E L+ +G + S +ID TR+ ++ C +G++
Sbjct: 1296 --------EFVLQTEGTGLLDVLS------------HPLIDPTRTVSNDPLEMCRVFGVE 1335
Query: 1153 AGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPF 1212
A L + I G + HL I+A+ ++ G G+ G + S
Sbjct: 1336 AARTSILNEIRLVIESDGSYVNFRHLAILADIMTQRGIICGITRHG-----TNRGESGAL 1390
Query: 1213 VQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
++ F ++AA +D +G V+++ GK+ S+GTG
Sbjct: 1391 MRCSFEETVEILLEAAATAEIDRCKGVVESVMLGKIASIGTG 1432
>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
Length = 1015
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 159/592 (26%), Positives = 270/592 (45%), Gaps = 76/592 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L +
Sbjct: 270 VRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNG 329
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + DGD ++ NR PS+H
Sbjct: 330 PNEHPGARYVIRDSG----ERIDLRFHRRAGDLVLQYGWQVERHIVDGDFIIFNRQPSLH 385
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+++L +
Sbjct: 386 KESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCMVPLN 444
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q ++ + QD+L + + V LS Q+ + ++ P + P +
Sbjct: 445 IVSPQRNWPIMGIVQDTLCGIYKMCRRDVFLSEEQVMNILLWVPDWDGVIPQPAILKPRP 504
Query: 541 VWSGKQLFSMLLPPDFEYT-------FPSKD--VYISGGKLI------SAEGSSWLRDYE 585
WSGKQ+ S++LP Y P KD V++ GG+L+ A G+S +
Sbjct: 505 RWSGKQIISLVLPFTLNYLQADKAGFSPLKDEGVFVDGGELMYGLFRKQAVGAS----KQ 560
Query: 586 GNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
G + ++ + L+F AQ V+ WL G ++ + D RK
Sbjct: 561 GIIHIIFNEKGPEAALNFFNGAQTVVNYWLLHNGFSIGIGDTI-----PDRKT------- 608
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
++ ++ + Q+ V + ++ SL G + ++E + AAL+QA +A
Sbjct: 609 -IQGIENAVSEQKTEVTE----ITRKATADELESLPGMSIRETFESKVQAALNQARENAG 663
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+++L N+ + M +GSKG+ + + Q + +G Q A R P
Sbjct: 664 TKTQESLKDL--------NNAVQMALSGSKGSTINISQMTAIVGQQ---AVEGKRIPFGF 712
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 713 KYRTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLVDTAVKTAET 767
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G + RRL+ + D+ YDGTVRN+ G+ +VQF Y +G I QPV
Sbjct: 768 GYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFLYGEDGLDAV--HIESQPV 816
>gi|397135918|gb|AFO11454.1| RNA polymerase I, partial [Citeromyces matritensis]
Length = 860
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 165/591 (27%), Positives = 273/591 (46%), Gaps = 70/591 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N +L+ + E
Sbjct: 151 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLSXPEVVTPYNIHKLTELVRNGPNEH 210
Query: 377 -GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 211 PGAKYVIRDTG----DRIDLRYHKRAGDIDLQYGWRVERHLMDDDPVLFNRQPSLHKMSM 266
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L ++ Q+++
Sbjct: 267 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCSVPSQIVSP 325
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + Q+ + + P P I K +W
Sbjct: 326 QSNKPVMGIVQDTLCGVRKMTLRDSFIDYDQVMSMLFWIPQWDGVIPQPAILK--PKPLW 383
Query: 543 SGKQLFSMLLPPDFE--------YTFPS-KDVYISGGKLISAEGSSWLRDYEGNLFQYLI 593
SGKQLFSM +P Y P+ + I G+++ G + +
Sbjct: 384 SGKQLFSMAIPRGIHLLRLDGATYLSPNDTGMMIRNGEVMFGVVDKKTVGSAGGGLVHTV 443
Query: 594 KRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
R + + D Q+V+ WL G ++ + D +A S R+I D I E
Sbjct: 444 MREKGSAICSDLFGNIQKVVNFWLLHNGFSIGIGDT-IADGSTMREI-TDTITRAKEEV- 500
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
Q++++D+ N L ++E +L+ + E + S L+QA A + ++
Sbjct: 501 -----QEIILDAQSNQL----EAEPGMTLRE---TXESKVSRTLNQARDSAGRSAEMSLK 548
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRL 771
+L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 549 DL--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHF 597
Query: 772 RAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRL 828
D + +K + VENS+L GL P E F H++ R+ D A G + RRL
Sbjct: 598 TKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGRE-GLXDTAVKTASTGYIQRRL 651
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSAC 879
+ + D+ YDGT RN+ G+ IVQF Y +G ++ QPV ++
Sbjct: 652 VKALEDIMVHYDGTTRNSLGD-IVQFIYGEDGLDGT--QVEKQPVDTIPGS 699
>gi|374633177|ref|ZP_09705544.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
gi|373524661|gb|EHP69538.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
Length = 886
Score = 187 bits (475), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 224/927 (24%), Positives = 387/927 (41%), Gaps = 141/927 (15%)
Query: 8 EGLEVPSGILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTN 56
E +++ I+ GI GI + E K+SV I G E V +PRLG+ P
Sbjct: 3 ERIQLNEKIVKGIRFGILSPDEIRKMSVTAIITAEVYDEDGTPIEGSVMDPRLGVIEPGQ 62
Query: 57 ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDI-------------AKLLNSICPKCK 103
+C CG C GHFG I+ ++H F+ + KL K K
Sbjct: 63 KCPVCGNVI-GNCPGHFGHIELIRPVIHVGFVKHVYDLLRSTCRRCGRVKLHEDEIQKYK 121
Query: 104 TIRKERQKGAGSSRKE----------QPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAI 153
I + ++ S+ K + C +C + + + G +
Sbjct: 122 KIHEAIKRRWPSAAKRLIDYVKKSSMKAPTCPHCGEKQLKIKLEKPYNFYEERKEGMVRL 181
Query: 154 I-VEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR- 211
++I E+L +K+PD + +D + S +P +L+ V + + PSI
Sbjct: 182 TPLDIRERL----EKIPDSDVELLGYDPK----SSRPEWIILTVLPVPPIT--IRPSIMI 231
Query: 212 EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS 271
E I ++D K + N R+ E A + + + D W + Y +I
Sbjct: 232 ESGIRAEDDLTHKLVDIVRINERLKESIDAGA-PQLIVEDLWDLLQYHVATYFDNEIP-- 288
Query: 272 HLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
L SK + R + ++ K+ N SG KR D R V++
Sbjct: 289 -----GLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSARTVIS 333
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRI 390
DPNI + E+G+P +A+ L + E++ WN +RL I+ G YV R G
Sbjct: 334 PDPNISIDEVGVPYDIAQILTVPEKVTKWNLDRLREYVINGPEKWPGANYVVRPDG---- 389
Query: 391 RRIDALELGD------------IIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RRID + D ++ R L +GD+V+ NR PS+H S++ V+VLP
Sbjct: 390 RRIDLRYVKDRKELASTLAPNFVVERHLINGDVVIFNRQPSLHRISMMGHRVRVLP-GRT 448
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+N L C P++ DFDGD ++ ++PQ+ A E EL+ + + ++ + G ++ QD
Sbjct: 449 FRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAETRELMTVHRNILTPRYGGPIIGSAQDY 508
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEY 558
++ A+LL + LL+ ++Q + + ++ +++GKQ+ S LP DF +
Sbjct: 509 ISGAYLLTVKTTLLTESEVQTILGVADISKALGEPAILAPKRLYTGKQILSYFLPEDFNF 568
Query: 559 TFPS---------KD--------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRY-RD 598
P+ KD + I GKL+ + + ++ +L++ Y D
Sbjct: 569 HGPANISSGVRSCKDEDCAHDSFLVIKQGKLLMGVLDKKALGNQQPESVLHWLVREYSED 628
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA-QDTCNFQ 657
VL + +V ++ + G+T++LSD+ + + ++I ++A +
Sbjct: 629 YVLWLMDNLFKVFLRFVELHGLTMTLSDVTIPPEAS------EKIAERAKDARKKVLELI 682
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY 717
+L + + E+ S + L + + ++ A +D F
Sbjct: 683 ELYKQGKLEPIPGRTMEETLESYILDTLDKLRNEAGEIATAYLDPF-------------- 728
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNT 777
N+ M + G++G++L + Q + LG Q R S R GD +
Sbjct: 729 ----NNAYIMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYSDRTLPHFRRGDIS 781
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRD 834
A+ +I S SF +GLNP+E F H+ R+ D A G + RRL+ + D
Sbjct: 782 PEARGFIYS-----SFRSGLNPVEMFFHAAGGRE-GLVDTAVRTSQSGYMQRRLINALSD 835
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGT 861
L YDGTVR YG +++Q Y +G
Sbjct: 836 LRMEYDGTVRTLYG-EVIQTIYGGDGV 861
>gi|113957457|gb|ABI49115.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 996
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 154/578 (26%), Positives = 264/578 (45%), Gaps = 80/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + +
Sbjct: 255 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNDH 314
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 315 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESM 370
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 371 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 429
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + L V L+ Q+ + ++ P P I K W
Sbjct: 430 QRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQVMNILLWVPDWDGVLPQPAILKPRPK--W 487
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------VYISGGKLISA--EGSSWLRDYEGNLFQY 591
+GKQ+ S+++PP T S + +++SGG+L+ + S G +
Sbjct: 488 TGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLFDKKSVGATSGGIIHII 547
Query: 592 LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + ++F AQ V+ WL G ++ + D ++ R +
Sbjct: 548 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQR-------------IE 594
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ N Q+ V + + + D E + ++E + S AL++A DA
Sbjct: 595 NAVNQQKEDV-AEITRSATENDLEPLPGMNVRE-TFESKVSKALNKARDDA--------- 643
Query: 712 NLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELS 764
+ G KD N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 644 GTVTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH--- 700
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 701 ------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 749
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 750 YIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 786
>gi|397135958|gb|AFO11474.1| RNA polymerase I, partial [Magnusiomyces magnusii]
Length = 869
Score = 187 bits (474), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 160/570 (28%), Positives = 258/570 (45%), Gaps = 65/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNIDLDQVGVPRSIARTLTYPEVVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID AL+ G + R D D VL NR PS+H S+
Sbjct: 213 PGAKYIIRDTG----ERIDLRYHKRAGDIALQYGWXVERHXLDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+ + + Q+I
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSXICMVPLQIITP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + Q+ + + P+ + P+ I +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTKRDTFCDFDQVMNILFWIPNWNGIVPEPTIIKPKPLWTG 387
Query: 545 KQLFSMLLPP-------DFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ SM +P D P D + + G + + G L + K
Sbjct: 388 KQMLSMCIPDGIHLRRLDKSPISPDDDGMLVVKGEIMYGVVNKKTIGASAGGLIDIIFKE 447
Query: 596 YRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ D Q+V+ WL G ++ + D + + M I + EA+
Sbjct: 448 KGAYICRDXFGNIQKVVNFWLLHNGFSIGIGDTIADADT------MKTITETIEEARXQV 501
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQN 712
+ Q++ D+ N L A QG L ++E+ S L+QA +A K+
Sbjct: 502 S--QIISDAERNKLERA---------QGMTLRETFEQNVSRTLNQARDNAGKY------- 543
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
A K + N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 544 -AEKSLKEXNNVKQMVISGSKGSFINISQMSACVGQQ---IVEGXRIPFGFADRTLPHFA 599
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL+P E F H++ R+ G + RRL+
Sbjct: 600 KDDYSPESKGF-----VENSYLRGLSPQEFFFHAMAGREGLIDTAVKTAXTGYIQRRLVK 654
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 655 ALEDVMVHYDGTVRNSLGD-ILQFVYGEDG 683
>gi|397135928|gb|AFO11459.1| RNA polymerase I, partial [Nadsonia fulvescens]
Length = 872
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 158/570 (27%), Positives = 266/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN++L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLELDQVGVPRSIARTLTYPEIVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L + Q+++
Sbjct: 269 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDTFIDYEQVMNICFWVPGWDGVVPHPAILKPKPLWTG 387
Query: 545 KQLFSMLLPPD-----FEYTFP---SKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIK 594
KQ+ S+ +P F+ + P KD +YI G++I G + I
Sbjct: 388 KQMASLCIPKGIHLQRFDDSNPIISPKDNGMYIVDGQIIYGVVDKKTIGATGGGLVHTIM 447
Query: 595 RYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
R + + +F + Q+ + WL G ++ + D + + M +I + EA+
Sbjct: 448 REKGSQICCNFFGSIQKTVNFWLLHNGFSIGIGDTIADAGT------MRDITNTIAEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q+++ D+ N L S + + R S+E S L+QA A + +++
Sbjct: 502 KV--QEIINDAQANTL-SPEPGMTLRE------SFEHNVSRVLNQARDTAGRSAEMSLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P+ S
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPYGFSDRTLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K +I ENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDVMVQYDGTTRNSLGD-IIQFVYGEDG 685
>gi|387594692|gb|EIJ89716.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm3]
Length = 1612
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 211/888 (23%), Positives = 385/888 (43%), Gaps = 122/888 (13%)
Query: 31 EKLSVMEIGAVSE--VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFL 88
E ME G E + + RLG CS+CG + +C GHFG+I+ + H ++
Sbjct: 32 EHPETMESGVPKEGGLVDLRLGTSERGFLCSTCGHRS-DSCVGHFGYIELAKPVFHIGYI 90
Query: 89 SDIAKLLNSICPKCKTIRKER---QKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSK 145
I K+L S+C C +R E+ ++KE+ R Y M + S+
Sbjct: 91 GKIKKVLESVCFFCSKLRVEKSILHSPKPRTQKERKRRLNYIWNLAKNRAVCMGELVESE 150
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
D E ++ +N++ G Q+ E S + + +LS ++V +L+
Sbjct: 151 DNP-------EEKQRTGCENRQPTIRKEGLHLLAFQKGEESSE-GKTMLSAEKVLEILRR 202
Query: 206 VDPSIREE--FILSKDAP---FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKM 260
+ E F L K P ++ PV P R P D+ T L +
Sbjct: 203 IPEDDIEALGFDLEKARPEWMIIRVLPVPPPQVR----PSIVMEGSLRCEDDLTHKLADI 258
Query: 261 VD-------YRGRDIELSHLVQDCLKISKLHL------DKSSRKDSAEV--RQKKNIDIS 305
+ Y + H+++D ++ + H+ D S + S + R K I
Sbjct: 259 IKASNNLKRYEQEGVA-GHIIRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRAR 317
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
++ ++GKR D R V+T DPNI + E+G+P ++A L ER+ +N ++L
Sbjct: 318 LRGKEGRVRGNLMGKRVDFSARTVITADPNISMNEVGVPEEIARMLTFPERVTEYNIDKL 377
Query: 366 SVCISFRLLEKGEL------YVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDI 411
+ +L+ +G YV R G ++ID L+ G ++ R L++GD
Sbjct: 378 T-----QLVHRGPYNHPGANYVIRDDG----QKIDLRFHKGEVHLQCGYVVERHLSNGDT 428
Query: 412 VLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVE 471
VL NR PS+H S++A +V+ S+ +N +P++ DFDGD ++ ++PQ+I A+ E
Sbjct: 429 VLFNRQPSLHKMSMMAHRARVMKYSTF-RLNLSVTAPYNADFDGDEMNLHLPQSIPAQAE 487
Query: 472 LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH--RFL 529
L EL ++K +++ QS + ++ + QD+L + L + L+ Q+ L + + +
Sbjct: 488 LKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKLTRRDLFLTRSQVMHLHYAIDNGSKPI 547
Query: 530 SPDIFKISKDSVWSGKQLFSMLLP--------------PDFEYTFPSKDVYISGGKLISA 575
P I + + +++GKQ+FS LP ++ +V I G+L++
Sbjct: 548 KPTILRPA--VLYTGKQIFSATLPDVTYKGLHSEHVHGKNYRANPMDSEVVIKNGELLAG 605
Query: 576 E-GSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWL-SVRGMTVSLSDLYLASH 632
+ G L + + R +DF+ A Q + WL + +V + D
Sbjct: 606 IICKKTVGTASGGLIHVIANDFPRSVCVDFIDALQRAISTWLMAYETFSVGIGDTIADPS 665
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQ 690
S MD I + +A+ + + ++V + N L L G + S+E
Sbjct: 666 S------MDMIKEAIEQAKG--DVKDIIVQAESNNL---------ERLPGLTMRESFEAA 708
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
+ AL++A + ++++ N++ M +GSKG+ + + Q S C+G Q
Sbjct: 709 VTLALNKARDTSGTSTQKNLRS--------QNNIKQMVVSGSKGSYINISQMSACVGQQS 760
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
R + + D T ++ +I S S++ GL+P+E F H++ R
Sbjct: 761 VEGK---RILNGFRDRSLPHFTKDDFTAESRGFISS-----SYVAGLSPVEFFFHAMGGR 812
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
+ G + RRL+ + D +D +VR+ G+ ++Q +Y
Sbjct: 813 EGLIDTAVKTAETGYIQRRLIKALEDAQVRHDKSVRDGEGH-VIQCAY 859
Score = 56.6 bits (135), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 159/402 (39%), Gaps = 76/402 (18%)
Query: 873 VGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKK----SNADQT-----MSL 923
VG+L+A +I E A L T L + + + G + NA QT +++
Sbjct: 1087 VGTLAAQSIGEPATQMT------LNTFHLAGVASTVTRGVPRLKEIINAAQTIKTPSLTI 1140
Query: 924 FLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVR 983
+L ++ RH E GA + +E L DI+ S IIY P ++K +I + +
Sbjct: 1141 YLKEEI---RHTLE-GAKRAQQEIERCYLKDILLKSEIIYDPTMRAVKADEDFIFAYGIL 1196
Query: 984 KEI--------MKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKEC 1035
M R L +++D R + A+T L S + C M +
Sbjct: 1197 DPTVYTPDSPWMLRLELSRSAMVDRGIRIEQVAKT-LSHS------TTYRC----MHSDH 1245
Query: 1036 NDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKV---DILWKDKQKAS 1092
N + + + N + +ET +M VKG +IK+V +I +DK+
Sbjct: 1246 NSSEQIIRCELPNNEEALRKIETGVSCIM-------VKGMPKIKRVFISEIGTEDKK--- 1295
Query: 1093 KSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGID 1152
E L+ +G + S +ID TR+ ++ C +G++
Sbjct: 1296 --------EFVLQTEGTGLLDVLS------------HPLIDPTRTVSNDPLEMCRVFGVE 1335
Query: 1153 AGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPF 1212
A L + I G + HL I+A+ ++ G G+ G + S
Sbjct: 1336 AARTSILNEIRLVIESDGSYVNFRHLAILADIMTQRGIICGITRHG-----TNRGESGAL 1390
Query: 1213 VQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
++ F ++AA +D +G V+++ GK+ S+GTG
Sbjct: 1391 MRCSFEETVEILLEAAATAEIDRCKGVVESVMLGKIASIGTG 1432
>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
Length = 1016
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 153/577 (26%), Positives = 266/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + +W+G
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPMWTG 509
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P S + + +SGG+L+ + G ++I
Sbjct: 510 KQILSLVIPAGLNLLRGSDEGFSPLNDDGLLVSGGELMYGLLNKKSVGATGGGVIHIIFN 569
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D + R Q+
Sbjct: 570 EKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRETIKR-------------IQNA 616
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
Q+ VD SA D+E SL G ++ ++E + S AL+ A +A + ++
Sbjct: 617 VTAQKDEVD---RITRSATDNE-LESLPGMNVRETFESKVSKALNNARDEAGRVTEDSLK 672
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 673 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 720
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 721 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 770
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 771 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 161/595 (27%), Positives = 271/595 (45%), Gaps = 96/595 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ + E + +N ++L ++
Sbjct: 415 IRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRG 474
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 475 DSQYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLH 530
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N +P++ DFDGD ++ ++PQ++ + E++E+ + +Q
Sbjct: 531 KMSMMGHKVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQ 589
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
LI Q+ + ++ + QD+LTA ++ + V + +M L M P+ + P I K
Sbjct: 590 LITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILK--P 647
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQ+F++++P PD E P K V I G+L+S S
Sbjct: 648 KPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICS 707
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ GNL + +V Y+ Q V+ WL G T+ + D
Sbjct: 708 RTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLLAEGHTIGIGD----------- 756
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ D+ Y R+ Q+T +L V + + A + E E L Q
Sbjct: 757 TIADQATY--RDIQETIRKAKLDV---VEVIEKAHNDE-----------LEPTPGNTLRQ 800
Query: 698 ASVDAFKHVFWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
+ + D ++ A + S+ N+ AM AGSKG+ + + Q C+G Q+
Sbjct: 801 TFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEG 860
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
P FR PH + D +K + VENS+L GL P E F H++
Sbjct: 861 KRIPFGFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTPSEFFFHAM 906
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGTVRN+ G Q+VQ Y +G
Sbjct: 907 GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLG-QLVQLRYGEDG 960
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEV-----------TNPRLGLPNPTNECSSCGAKDRKA 68
+ GI + E +++S+ EI SE+ +PR G+ + C +C A
Sbjct: 91 VQFGILSPDEIKRMSIGEI-EFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTC-AGSLAD 148
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKER---------QKGAGSSRKE 119
C GHF I+ + H FLS KLL +C C + ++ +K AG++R+
Sbjct: 149 CPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLRKTAGNARRR 208
Query: 120 QPRVCKYC 127
+ + C
Sbjct: 209 LAVIYEIC 216
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 157/584 (26%), Positives = 270/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDYVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P S V I G+L+S
Sbjct: 503 --PRPLWTGKQVFNLIIPKQINLIRTSAWHSESETGFITPGDTHVRIEKGELLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 561 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAA 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 615 TMEKINETISKAKNEV--KELIKAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
Length = 1748
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 165/592 (27%), Positives = 274/592 (46%), Gaps = 93/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N RL + +
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNG 411
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD +L NR PS+
Sbjct: 412 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSL 467
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 468 HKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 526
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ L ++ P P I K
Sbjct: 527 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNLLLWVPDWDGVLPQPAILK-- 584
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
WSGKQ+ SM+LP P E P D V + GG+L+ S +
Sbjct: 585 PRPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTV 644
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y D + F AQ V+ WL G ++ + D + + +KI
Sbjct: 645 GATGGGVVHTIFNEYGPDTAMSFFNGAQRVVNYWLLHNGFSIGIGDT-IPDLATIQKI-- 701
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
++ ++ VDS ++A +E+T +L G ++ ++E + S AL+
Sbjct: 702 ----------ENAVRVRKEEVDS-----ITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
A +A A + KD N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 747 ARDEA---------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRI 797
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 798 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 843
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 844 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDG 894
Score = 47.4 bits (111), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|110669643|gb|ABG81916.1| RNA polymerase II largest subunit, partial [Agonimia sp. AFTOL 684]
Length = 1023
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 157/594 (26%), Positives = 264/594 (44%), Gaps = 97/594 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L+ + S
Sbjct: 270 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIARTLTYPETVTQYNINKLARLVASG 329
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R G RID L+ G + R + DGD++L NR PS+H
Sbjct: 330 PEQHPGARYIIRPQG----ERIDLRFHKNTSQIILQNGWKVERHIMDGDVILFNRQPSLH 385
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL++L +
Sbjct: 386 KESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLN 444
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + + LS ++ + ++ P P IFK
Sbjct: 445 IVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 502
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP + G+ + G S L +G L L +
Sbjct: 503 RPRWTGKQMISMVLPPALNLVRIDGKPNLPAGERFAPAGDSGLFVADGQLLFGLFNKKSV 562
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + KI
Sbjct: 563 GTGSNGIIHTIYNEFGHETAMGFFNGAQTVVNYWLLHNGFSIGIGDT-VPDVGTVEKI-- 619
Query: 641 DEIFYGLREAQDTCNFQQLMVD---SHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAAL 695
+L VD + + + + +E +L G ++ ++E + SAAL
Sbjct: 620 -----------------KLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAAL 662
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---S 751
+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 663 NGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 713
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + +K + VENS+L GL P E F H++
Sbjct: 714 RIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMA 759
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 760 GREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYGEDG 812
>gi|397135884|gb|AFO11437.1| RNA polymerase I, partial [Candida multigemmis]
Length = 872
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 158/570 (27%), Positives = 268/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPHNIHRLTEFVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMSYWIPDWDGVIPPPAIVKPKPLWSG 387
Query: 545 KQLFSMLLPPDFEYTFPSKDVYI-----SGGKLISAEGSSWLRDYE------GNLFQYLI 593
KQL SM +P V + SG ++ E + D + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDDGVNLMSPKDSGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ ++ L++ Q+V+ WL G ++ + D S + M ++ ++EA+
Sbjct: 448 REKGPQICAQLFSRIQKVVNFWLLHNGFSIGIGDTIADSST------MKDVTTTIQEAK- 500
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 501 -AKVQEIILDAQRNTL----EPEPGMTLRE---SFEHNVSRILNQARDTAGRTAEVNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P S +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSDRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDG 685
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 214/948 (22%), Positives = 387/948 (40%), Gaps = 175/948 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELG-----DIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G RID L+ G ++ R + DGDIV+ NR P++H S++
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKACNKLVERHMCDGDIVIFNRQPTLHKMSMMGHR 478
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R
Sbjct: 479 VRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNR 537
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QD+LTA + V L ++ L MF + P I K +W+GKQ
Sbjct: 538 PVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQ 595
Query: 547 LFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEG 586
+FS+++P PD E + P K + K++ G L G
Sbjct: 596 IFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAG 655
Query: 587 NLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+L + Y+ Q V+ WL + G T+ + D S + +I
Sbjct: 656 SLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQN 709
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDA 702
+++A+ + +++ +H N L + ++ + + L+ + ++ + +Q S+
Sbjct: 710 TIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSE 767
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
+ N+ +M +G+KG+ + + Q +G Q+ P F+
Sbjct: 768 Y------------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKH 809
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 810 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 853
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 900
>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
Length = 1016
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 155/577 (26%), Positives = 264/577 (45%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V LS Q+ + ++ P + P + W+G
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQVMNILLWVPDWDGILPQPAILKPRPKWTG 509
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISA--EGSSWLRDYEGNLFQYLI 593
KQ+ S+++P T PS + + +SGGKL+ S G +
Sbjct: 510 KQIISLVVPAGLNLTRPSSEGFSPVNDDGLLVSGGKLMYGLLNKKSVGATSSGIIHVIFN 569
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D ++ +++ +D
Sbjct: 570 EKGSEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDKNT-------------IQQIEDA 616
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V SA ++E L G ++ ++E + S AL++A DA ++
Sbjct: 617 VNKQKEDV---AEITRSATENE-LEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 672
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 673 DL--------NNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 720
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + +K + VENS+L GL P E F H+ R+ G
Sbjct: 721 -----FTKDDYSPESKGF-----VENSYLRGLTPTEFFFHATAGREGLIDTAVKTAETGY 770
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R L+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 771 IQRCLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 187 bits (474), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 154/584 (26%), Positives = 263/584 (45%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + ++G+P +A L E + +N ERL + +
Sbjct: 346 IRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 405
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 406 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 461
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 462 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 520
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 521 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILK 580
Query: 536 ISKDSVWSGKQLFSMLLPPDFE-------YTFPSKDVYISGGKLISAEGSSWLRDY---- 584
+W+GKQ+F++++P ++ + V G L+ E L
Sbjct: 581 --PRPLWTGKQVFNLIIPKQINLIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKK 638
Query: 585 -----EGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 639 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAA 692
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + A+ N + ++ N + K + S+E + + L++A
Sbjct: 693 TMEKINETISNAK---NAVKELIRKAQNKELEPKPGRTMME------SFENEVNQVLNRA 743
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 744 RDDAGSS--------AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 792
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 793 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 890
>gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase subunit A' [Pyrococcus abyssi GE5]
gi|5458047|emb|CAB49537.1| rpoA1 DNA-directed RNA polymerase, subunit A' [Pyrococcus abyssi
GE5]
gi|380741373|tpe|CCE70007.1| TPA: DNA-directed RNA polymerase subunit alpha [Pyrococcus abyssi
GE5]
Length = 907
Score = 187 bits (474), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 163/596 (27%), Positives = 276/596 (46%), Gaps = 92/596 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR + R V++ DP I + E+G+P Q+A L + E++ +N E+L + ++ G
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG 380
Query: 378 ELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV G RIR +++ +++G + R L DGDIVL NR PS+H S++A
Sbjct: 381 ANYVIDPEGR-RIRIMESNRENLARMIDIGWTVERHLLDGDIVLFNRQPSLHRMSIMAHR 439
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 440 VRVMPYRTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYGG 498
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQ 546
++ QD ++ +LL + + +++Q+ MF PD ++ K +WSGK
Sbjct: 499 PIIGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGVDIKELPEPDKYENGK-PLWSGKT 557
Query: 547 LFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKLI 573
+FS+LLP D E P + VYI GKL+
Sbjct: 558 IFSLLLPDDLTVWYRNKLCDEPERCEALEKLIEEKLMPDPEEVRKLAYDGFVYIQNGKLL 617
Query: 574 SA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T + D L
Sbjct: 618 SGAIDKKAYGRE-DGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLP 676
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYE 688
+ R + EI +REA++ + L+ A L G+ L + E
Sbjct: 677 EEARDR---IKEI---IREAEE-----------RVQKLIEAYKRGELEPLPGKTLEETLE 719
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ A L++A +A ++A KY DN + M K G++G +L + Q + LG
Sbjct: 720 SKIMAVLAEARDNA--------GSIAEKYLGMDNHTVIMAKTGARGKILNITQMAALLGQ 771
Query: 749 QHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
Q +R + + GD AK + V NS+ +GL+P E F H++
Sbjct: 772 QSIRGKRLYRG---FRGRVLSHFKPGDLGARAKGF-----VVNSYKSGLSPQEYFFHAMG 823
Query: 809 SRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 824 GRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-VIVQFRYGEDGV 877
Score = 53.9 bits (128), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S +E+ V + R+G+ +P C +CGAK
Sbjct: 7 VIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAK 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIK 107
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 187 bits (474), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 264/582 (45%), Gaps = 71/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 348 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLQELVDYG 407
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 408 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQP 463
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 464 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 522
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
K +++ Q+ R ++ + QD+L + + D+ + + M L + P +
Sbjct: 523 PKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILK 582
Query: 538 KDSVWSGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAE-GSSWL 581
+W+GKQ+F++++P D E F + V I G+L++ L
Sbjct: 583 PRPLWTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTL 642
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + + D FL Q ++ WL G T+ + D +A S KI
Sbjct: 643 GTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT-IADSSTMEKI-- 699
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+ N + + D F D E R++ ++E + + L++A
Sbjct: 700 ---------NETISNAKTAVKDLIRQFQEKKLDPEPGRTMTE---TFENRVNQVLNKARD 747
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
DA + A K ++ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 748 DA--------GSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIP 796
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 797 FGFDGRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 851
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 852 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 892
>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
Length = 1027
Score = 187 bits (474), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 156/579 (26%), Positives = 271/579 (46%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 288 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVAPYNIHKLHQLVKNGPNEH 347
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R + DGD ++ NR PS++ S+
Sbjct: 348 PGAKYVIRDSG----ERIDLRHHKRAGEIMLQYGWKVERHIVDGDFIIFNRQPSLYKESM 403
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+++L + +++
Sbjct: 404 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVSP 462
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + ++ P P I K W
Sbjct: 463 QRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPK--W 520
Query: 543 SGKQLFSMLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQ+ S+++P P E P+ D +++ GG+L+ G ++I
Sbjct: 521 TGKQIISLVIPAGLNLIRPSAEGLSPANDDGLFVHGGELMYGLFVKKTIGASGGGIIHII 580
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + ++F AQ V+ WL G ++ + D + S +KI +
Sbjct: 581 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDT-IPDRSTIQKI------------E 627
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
+ N Q+ V + SA ++ + SL G ++ ++E + S AL++A DA
Sbjct: 628 NAVNKQKADV---ADITQSATEN-TLESLPGMNVRETFESKVSKALNKARDDAGTATEDS 683
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHEL 763
+++L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 684 LKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH-- 733
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 734 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 781
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 782 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 819
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 166/649 (25%), Positives = 294/649 (45%), Gaps = 111/649 (17%)
Query: 271 SHLVQDCLKISKLHLDKSSRKDSA----------EVRQKKNIDISNSSGLRWIKDVVLGK 320
SH++++ LK+ + H+ ++ KD+ R K+I S I+ ++GK
Sbjct: 293 SHIIEEDLKMLQFHV--ATLKDNELPGMPKAVQRGGRPLKSIKQRLKSKEGRIRGNLMGK 350
Query: 321 RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGEL 379
R D R V+T DPN+ + ++G+P +A+ L E + +N +R+ ++ + G
Sbjct: 351 RVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEVVTPFNIDRMQELVARGHNQYPGAK 410
Query: 380 YVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ R+ G RID L+ G I R + D D+++ NR P++H S++
Sbjct: 411 YIIRENG----ERIDLRYHPKPSDLHLQYGYKIERHIVDDDLIVFNRQPTLHKMSMMGHR 466
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VK+LP S+ +N +P++ DFDGD ++ ++PQ++ + E+ EL+ + + ++ QS R
Sbjct: 467 VKILPWSTF-RLNLSVTTPYNADFDGDEMNLHVPQSLETKAEIQELMMVHRNILTPQSNR 525
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QDSLTAA + V L M L M+ P + P I K +W+GKQ
Sbjct: 526 PVMGIVQDSLTAATKFTKRDVFLEKESMMNLLMWLPSWDGKMPVPAILK--PKPLWTGKQ 583
Query: 547 LFSMLLP-------------PDFEYTFPSK-------DVYISGGKLISAEGSSWLRDYEG 586
LFS+++P PD E P K V + G+L+S S +G
Sbjct: 584 LFSLIIPGTNVNVIRTHSTHPDDEDNGPYKWISPGDTKVLVEHGQLLSGILSKDTLGNKG 643
Query: 587 NLFQYLIKRY--RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
+++ D +F Q V+ +L + G ++ + D + + + ++I
Sbjct: 644 GSLMHVVAMELGPDIARNFYGNIQTVVNNFLMLEGHSIGIGD------TIADNLTYNDIQ 697
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVD 701
+R A++ + +++ +H N L + ++ + + L+ + ++ + +Q S+
Sbjct: 698 KTIRSAKN--DVVEVIKKAHNNELEPTPGNTLRQTFENQVNRILNEARDKTGSSAQRSLS 755
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
F N+ M AGSKG+ + + Q C+G Q+ P FR
Sbjct: 756 EF------------------NNFKIMVTAGSKGSKINISQVIACVGQQNVEGKRIPFGFR 797
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 798 HRTLPHFIK----------------DDYGPESKGFVENSYLAGLTPNEFFFHAMGGREGL 841
Query: 814 FSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRLM M L YDGT+RN+ +Q++Q Y +G
Sbjct: 842 IDTAVKTSETGYIQRRLMKAMEGLMAHYDGTIRNS-NSQMIQLCYGEDG 889
Score = 42.7 bits (99), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+PR G+ + + C +C A + C GHFG I + H F++ I K++ +C C
Sbjct: 56 DPRQGVIDRASRCQTC-AGNMNTCPGHFGHISLTKPVFHVCFMTKIVKIMRCVCFYC 111
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 209/845 (24%), Positives = 359/845 (42%), Gaps = 123/845 (14%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFG ++ + + F++ K+L +C C + A +
Sbjct: 2 CPGHFGHVELAKPMFNIGFINISLKILRCVCHYCSKLLCSSASVA---------ILHKIT 52
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVK 188
+ + MRF +K L + K S+ D + F+ EE++ +
Sbjct: 53 KPTDRMRTAMRFTSGAKKLCTAEGGCGHMQPKYSR------DGFRIRAIFEDTAEESAER 106
Query: 189 PNRKVLSCKQVSYLLKDVDPSIREEFILS-----KDAPFLKCFPVTPNNHRVTEVPHAFS 243
++ ++ ++ + K + S E LS + L PV P R + +
Sbjct: 107 --KQTITAEKSYAIFKRISNSECEAMGLSWRWSRPEWLILTLLPVPPPQVRPSVMRGGLR 164
Query: 244 HEKKLFFDNWTRHLKKMVDYRG--RDIE----LSHLVQDCLKISKLHLDKSSRKD----- 292
+E D+ T L +V R++E ++H +++ + + + H+ +
Sbjct: 165 NE-----DDLTNKLGDIVKNNNTLRNLEATGAVAHAIREQIDLVQYHVATYMNNELPGIM 219
Query: 293 SAEVRQKKNIDISNSSGLRW------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQ 346
A VR S G R+ ++ ++GKR D R V+T DPN++L E+G+P
Sbjct: 220 PATVRGGSRA--IKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLRLHEVGVPFS 277
Query: 347 VAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGL------VRIRRIDALELG 399
+A L E + S+N + + + E G Y+ R+ G VR R LELG
Sbjct: 278 IARNLTYPEIVTSYNIDEMQKLVENGPDEYPGAKYIEREDGFKVNLAYVRNRSELQLELG 337
Query: 400 DIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLH 459
+ R + DGD VL NR PS+H S++ ++VLP S+ +N SP++ DFDGD ++
Sbjct: 338 YKVIRHIRDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTF-RLNLSVTSPYNADFDGDEMN 396
Query: 460 GYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ 519
++PQ R E+ EL+ + +++ Q + ++ + QD+L L + L M
Sbjct: 397 LHVPQTHQTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFLERDLMMN 456
Query: 520 LQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLPP----DFEYTFPSKD-------- 564
L M P I+K +W+GKQ+FS++LPP F T P +
Sbjct: 457 LLMHVGDWDGVIPKPAIYK--PRPLWTGKQVFSLILPPVNIIRFNITHPDDEKTDISPGD 514
Query: 565 --VYISGGKLISAEGSSWLRDYEGN-LFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGM 620
VYIS G+LI N L K + K+ D L + +VL ++ R
Sbjct: 515 TKVYISRGQLICGIVDKRTVGSSANGLIHITWKEFGPKITDTLISQIQVLVNHYILQRRQ 574
Query: 621 TVSLSDLYLASHSCSRKIL------MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDS 674
++ + D +A + R ++ +E+ +R+AQ ++ +V +M + ++
Sbjct: 575 SIGIGDT-IADDATMRNVIDTIQGAKEEVKLLVRKAQ-----EKELVLLPGKGMMESFET 628
Query: 675 ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKG 734
E + L G + +S A +Q S+ K N++ M AGSKG
Sbjct: 629 EVNKVLNG-----ARDKSGASAQRSL------------------LKSNNIKRMVSAGSKG 665
Query: 735 NLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSF 793
+ + + Q C+G Q+ +++ F H + + G + VENS+
Sbjct: 666 SFINISQICACVGQQNVEGKRIAYGF-HRRTLPHFVLDDLGPESR--------GFVENSY 716
Query: 794 LTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQI 851
L GL P E F H++ R+ G + RRL+ M D+ YDGTVRN+ N I
Sbjct: 717 LRGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEDIMVRYDGTVRNSC-NHI 775
Query: 852 VQFSY 856
V+F Y
Sbjct: 776 VEFLY 780
Score = 45.1 bits (105), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+ +D TR+ ++I GI+A + L + IS G + HL I+ +T++ G
Sbjct: 1276 EAVDHTRTTSNDIVEIFEVLGIEAVREVLLNEIRGVISFDGAYVNYRHLAILVDTMTYRG 1335
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ + G+ + + P ++ F ++AA G D L+G + + G++
Sbjct: 1336 HLMAITRHGV-----NRVDTGPLMKCSFEGTTDILLEAAMWGERDGLRGVTENIMLGQLA 1390
Query: 1250 SVGTG 1254
+GTG
Sbjct: 1391 PIGTG 1395
>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
Length = 872
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 166/588 (28%), Positives = 266/588 (45%), Gaps = 72/588 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L ++G+P +A L E + +N +RLS + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTYPEIVTPYNIQRLSQLVQNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIPLQYGWTVERHLQDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R ELT+L + Q+++
Sbjct: 269 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELTQLAMVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QDSL L L++ Q+ + ++ P + P I K +W
Sbjct: 328 QSNKPVMGIVQDSLCGIRKLTLRDTFLNYEQVMNVLLWVPDWDGQVPIPAIMK--PKPLW 385
Query: 543 SGKQLFSMLLPP--------DFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYL 592
+GKQ+ S+ +P D KD + I G++I G +
Sbjct: 386 TGKQIVSLCIPKGINLIRIDDNNPLSSPKDNGMLIENGEIIFGVVDKKTVGATGGGLVHT 445
Query: 593 IKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
I R + + +F Q V+ WL G ++ + D + + M +I + A
Sbjct: 446 IMREKGPQVCCNFFTGIQMVVNYWLLHNGFSIGIGD------TIADAATMRDITNTITAA 499
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
++ Q ++ D+ N L A+ + R S+E + S L+QA D
Sbjct: 500 KEKV--QDIIRDAQENRL-PAEPGMTLRE------SFEHKVSQTLNQAR---------DT 541
Query: 711 QNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN 769
+ + KD N++ M AGSKG+ + + Q S C+G Q R P +
Sbjct: 542 TGRSAEMSLKDTNNVKQMVTAGSKGSFINISQMSACVGQQIVEGK---RIPFGFKDRSLP 598
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + +K +I ENS+L GL P E F H++ R+ G + RR
Sbjct: 599 HFTKDDYSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 653
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSY---NIEGTSTPTGEIGDQP 872
L+ + D+ YDGT RN+ G+ ++QF Y ++GTS I P
Sbjct: 654 LVKALEDIMVHYDGTTRNSLGD-VIQFVYGEDGVDGTSVEKQTIDTIP 700
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 270/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 265 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 324
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 325 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 380
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 381 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 439
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 440 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILK 499
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P S V I G+L++
Sbjct: 500 --PRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDTQVRIERGELLAGTLCKK 557
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 558 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAST----- 612
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 613 -MEKINETISKAKNEV--KELIKAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 662
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 663 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 711
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 712 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 809
>gi|13183799|gb|AAK15346.1|AF338253_1 RNA polymerase II largest subunit [Leptomonas seymouri]
Length = 1657
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 155/573 (27%), Positives = 268/573 (46%), Gaps = 75/573 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L ER+N N +RL+ + R
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVNVINKKRLTEFVQ-RSTYP 382
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 383 SANYIMRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRV 442
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 443 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 501
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + + +Q + ++ L P I K +W+GKQ+FS
Sbjct: 502 CMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILK--PRPLWTGKQIFS 559
Query: 550 MLLP-------PDFEYTFPSKDVYI--SGGKLISAEGSSWLRDYEGNLFQYLI-KRYRDK 599
++LP P + FP D I G L+ A + G+L + +R D+
Sbjct: 560 LILPEVNHPASPYGKPPFPHNDKKIIQRGLLLVGAITKGVVGAAPGSLIHVIFNERGSDE 619
Query: 600 VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TCN 655
V F+ Q + + +V + D +A S ++ M+ + + R++ + N
Sbjct: 620 VAKFINGVQRITTYFNYCFAFSVGVQDT-VADASTLKE--MNNVLHKTRQSVEKIGAAAN 676
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
+L + M+ L S+E ++AL++ +A K +++
Sbjct: 677 NGKLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSNVR---- 716
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWN 769
+ NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 717 ----RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH-------- 764
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRR 827
D E ++ VE GL P E + H++ R+ G L R+
Sbjct: 765 -FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQRK 818
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
L+ + D+ AYDGTVRNA +++Q +Y +G
Sbjct: 819 LIKALEDVHAAYDGTVRNA-NQELIQLAYGEDG 850
>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
Length = 838
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 157/589 (26%), Positives = 273/589 (46%), Gaps = 92/589 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + E+GIP +A L E + +N + + + E
Sbjct: 86 LMGKRVDFSARTVITGDPNLSIDEVGIPRSIARNLTFPEIVTPYNIDAMQQLVRNGPNEH 145
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L++G + R L DGD ++ NR PS+H S+
Sbjct: 146 PGAKYVIRDTG----ERIDLRYHRRSGDIPLQIGWRVERHLVDGDTIVFNRQPSLHKMSM 201
Query: 426 IALTVKVLPISSVVTINPLCCSP----FHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
+ V+++P S+ +N C P ++ DFDGD ++ ++PQ++ A+ E+ E+ + KQ
Sbjct: 202 MGHKVRIMPYSTF-RLNLSVCGPISHPYNADFDGDEMNMHVPQSLEAKAEINEICMVPKQ 260
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
++ S + + + QD+L + + V L + + M+ P P I K
Sbjct: 261 IVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKAFVMNMAMWVPDWDGVLPIPAILK--P 318
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISA------EG 577
+W+GKQ+ SML+P PD E T S V I G+L++ G
Sbjct: 319 KPLWTGKQMLSMLIPKGVNVQTFHSEHPDNELTDISPGDTKVIIENGELLAGIVCKKTVG 378
Query: 578 SSWLRDYEGNLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR 636
+S G L + + +V + Q ++ WL G ++ + D + +
Sbjct: 379 AS-----AGGLVHVIWQEKGPEVCKTWFNGTQRLVNYWLFQYGFSIGIGDTVADTKT--- 430
Query: 637 KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
M + +++A++ +L++++H + M + R ++E Q ++AL+
Sbjct: 431 ---MQNVTSAIQQAKE--RVAELILEAHQD-RMKPMPGMTIRE------TFEAQVNSALN 478
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A A K A + + +N++ M AGSKG+ + + Q + C+G Q+
Sbjct: 479 TARDQAGKS--------AQQSLNPENNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRI 530
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
P F++ L C D+T ++ + VENS+L GL P E + H++ R+
Sbjct: 531 PFGFKY-RTLPC-----FTKDDHTPESRGF-----VENSYLRGLTPQEFYFHAMGGREGL 579
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ N+++QFSY +G
Sbjct: 580 IDTAVKTAETGYIQRRLIKALEDVMVKYDGTVRNSM-NEVIQFSYGEDG 627
>gi|13310932|gb|AAF36438.2|AF126254_1 RNA polymerase II largest subunit [Leishmania donovani]
Length = 1665
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 153/574 (26%), Positives = 264/574 (45%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++G R D R V+TGDPNI + E+G+P VA L ER+N N +RL+ + R
Sbjct: 324 LMGSRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQ-RTTYP 382
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 383 SANYIIRPNGNVTKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRV 442
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 443 RVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 501
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + + +Q + ++ L P I K +W+GKQ+FS
Sbjct: 502 CMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILK--PRPLWTGKQIFS 559
Query: 550 MLLP-------PDFEYTFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLI-KRYRD 598
++LP P + FP D I G L+ A + G+L + +R D
Sbjct: 560 LILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSD 619
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + + +V + D + + M+ + + R++ +
Sbjct: 620 EVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKE---MNNVLHKTRQSVEKIGAAA 676
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N QL + M+ L S+E ++AL++ +A K +++
Sbjct: 677 NNGQLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 717
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 718 -----RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 765
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ VE GL P E + H++ R+ G L R
Sbjct: 766 --FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQR 818
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ +YDGTVRNA +++Q +Y +G
Sbjct: 819 KLVKALEDVHASYDGTVRNA-NQELIQLAYGEDG 851
Score = 46.6 bits (109), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++ID++++ + I GI+A + L+ L A G NI H I+ +T+ G
Sbjct: 1320 NIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRG 1379
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S S P ++ F + AA G D ++G +L G
Sbjct: 1380 YLMAVSRTGI----NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQA 1435
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1436 RIGT-GLFDLL 1445
>gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leishmania major]
Length = 1663
Score = 186 bits (473), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 153/579 (26%), Positives = 268/579 (46%), Gaps = 86/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N N +RL+ + R
Sbjct: 325 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQ-RTTYP 383
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 384 SANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRV 443
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 444 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 502
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSV------WSG 544
+ + QDS+ ++ L E L + F R L D++++ ++ W+G
Sbjct: 503 CMGIVQDSVLGSYKLTEKDTFLD-------KYFIAERPLWLDLWQLPIPTILKPRPLWTG 555
Query: 545 KQLFSMLLP-------PDFEYTFPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLI- 593
KQ+FS++LP P + FP D + I G+L+ A + G+L +
Sbjct: 556 KQIFSLILPEVNHPASPHDKPPFPHNDSKIMIQRGQLLGGAITKGVVGAAPGSLIHVIFN 615
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD- 652
+R D+V F+ Q + + +V + D + + M+ + + R++ +
Sbjct: 616 ERGSDEVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKE---MNNVLHKTRQSVEK 672
Query: 653 ---TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
N +L + M+ L S+E ++AL++ +A K +
Sbjct: 673 IGAAANNGKLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSN 716
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHEL 763
++ + NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 717 VR--------RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH-- 766
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--P 821
D E ++ VE GL P E + H++ R+
Sbjct: 767 -------FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDT 814
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G L R+L+ + D+ +YDGTVRNA +++Q +Y +G
Sbjct: 815 GYLQRKLVKALEDVHASYDGTVRNA-NQELIQLAYGEDG 852
Score = 46.6 bits (109), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++ID++++ + I GI+A + L+ L A G NI H I+ +T+ G
Sbjct: 1320 NIIDFSKTSSNKIPEVVTVLGIEAARRKMLSELREAYLAYGLNINYRHYTILVDTMCQRG 1379
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S S P ++ F + AA G D ++G +L G
Sbjct: 1380 YLMAVSRTGI----NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQA 1435
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1436 RIGT-GLFDLL 1445
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 159/576 (27%), Positives = 263/576 (45%), Gaps = 65/576 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS--VCIS 370
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL V IS
Sbjct: 348 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLVRLVFIS 407
Query: 371 FRLLEKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
F + Y+ R G ++ LELG + R L DGD VL NR PS+H S
Sbjct: 408 FSETK----YIIRDDGQRSDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMS 463
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +++
Sbjct: 464 IMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 522
Query: 485 QQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWS 543
Q+ R ++ + QD+L + + D+ + + M L + P + +W+
Sbjct: 523 PQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWT 582
Query: 544 GKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAE-GSSWLRDYEGN 587
GKQ+F++++P D E F + V I G+L++ L G+
Sbjct: 583 GKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGS 642
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + D FL Q ++ WL G T+ + D +A S KI
Sbjct: 643 LVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT-IADSSTMEKI-------- 693
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ N + + D F D E R+++ ++E + L++A DA
Sbjct: 694 ---NETISNAKTAVKDLIRQFQGKELDPEPGRTMRD---TFENRVDQVLNKARDDA---- 743
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
+ A K ++ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 744 ----GSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFGFDGR 796
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTL 824
D ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 797 TLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 851
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 852 QRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 886
Score = 40.0 bits (92), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D R+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1334 CHED---VDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1390
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1391 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIM 1445
Query: 1245 WGKVPSVGTG 1254
G++ +GTG
Sbjct: 1446 LGQLAPIGTG 1455
>gi|157873478|ref|XP_001685248.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
gi|68128319|emb|CAJ08467.1| RNA polymerase ii largest subunit [Leishmania major strain
Friedlin]
Length = 1662
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 154/574 (26%), Positives = 265/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N N +RL+ + R
Sbjct: 324 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQ-RTTYP 382
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G LV+ R L++GD++ R + DGD+VL NR P++H S++ V
Sbjct: 383 SANYIIRPNGNVTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRV 442
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 443 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 501
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + + +Q + ++ L P I K +W+GKQ+FS
Sbjct: 502 CMGIVQDSLLGSYRLTDKDTFVDKYFIQSVALWLDLWELPIPAILK--PRPLWTGKQIFS 559
Query: 550 MLLP----PDFEY---TFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLI-KRYRD 598
++LP P Y FP D I G L+ A + G+L + +R D
Sbjct: 560 LILPEVNHPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSD 619
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + + +V + D + + M+ + + R++ +
Sbjct: 620 EVAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKE---MNNVLHKTRQSVEKIGAAA 676
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N +L + M+ L S+E ++AL++ +A K +++
Sbjct: 677 NNGKLTRKAGMSLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 717
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG+ L + Q ++ +G Q+ S P FR PH
Sbjct: 718 -----RTNSFKVMIEAGSKGSDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 765
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ VE GL P E + H++ R+ G L R
Sbjct: 766 --FMLDDYGETSRGMATRGYVE-----GLQPHEFYFHTMAGREGLIDTAVKTSDTGYLQR 818
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ +YDGTVRNA +++Q +Y +G
Sbjct: 819 KLVKALEDVHASYDGTVRNA-NQELIQLAYGEDG 851
Score = 46.6 bits (109), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++ID++++ + I GI+A + L+ L A G NI H I+ +T+ G
Sbjct: 1319 NIIDFSKTSSNKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRG 1378
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S S P ++ F + AA G D ++G +L G
Sbjct: 1379 YLMAVSRTGI----NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQA 1434
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1435 RIGT-GLFDLL 1444
>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
Length = 868
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 156/570 (27%), Positives = 267/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L ++G+P +A L E + +N +RL+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIQRLTELVRNGPNEH 212
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID AL+ G + R + D D VL NR PS+H S+
Sbjct: 213 PGAKYIIRDTG----ERIDLRYHKRAGDIALQYGWKVERHIVDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + ++ P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTKRDTFIDYEQVMNILLWIPGWDGVVPQPAILKPRPMWTG 387
Query: 545 KQLFSMLLPPD-----FEYTFP---SKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLI 593
KQ+ SM +P F+ P KD + I G++I + G L ++
Sbjct: 388 KQMVSMTIPSGIFLQRFDDGNPISSPKDNGMLIQKGEIIYGVVDKKTVGATGGGLIHTIM 447
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ KV F Q+V+ WL G ++ + D + + M +I + EA+
Sbjct: 448 REKGPKVCAGFFGNIQKVVNYWLLHNGFSIGIGD------TIADGATMRDIANTISEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++++ N L S + + R S+E S L+QA +A + ++
Sbjct: 502 KV--QEIILEAQSNKL-SPEPGMTLRE------SFEHNVSRVLNQARDNAGRSAEMSLKE 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M AGSKG+ + + S C+G Q R P +
Sbjct: 553 L--------NNVKQMVVAGSKGSFINISLMSACVGQQIVEGK---RIPFGFGDRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 657 ALEDIMVQYDGTTRNSLGD-VIQFVYGEDG 685
>gi|397135914|gb|AFO11452.1| RNA polymerase I, partial [Cephaloascus fragrans]
Length = 871
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 158/572 (27%), Positives = 267/572 (46%), Gaps = 67/572 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLE 375
++GKR D R V++GDPN++L ++G+P +A L E + +N RL+ I+
Sbjct: 152 LMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLSYPEIVTPYNIHRLTEYVINGPNEH 211
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 212 PGAKYVIRDTG----DRIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 267
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 268 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSP 326
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + + Q+ + + P P I K +W
Sbjct: 327 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNILYWIPGWDGVIPKPAILK--PKPLW 384
Query: 543 SGKQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQY 591
+GKQ+ SM +P D KD + I+G + + G L
Sbjct: 385 TGKQMVSMAIPKGIHLQRFDDGNSMLSPKDTGMLIINGEIMFGVVDKKTVGATGGGLIHT 444
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+++ + L+ Q+V+ WL G ++ + D +A S R +I + EA
Sbjct: 445 VMREKGPAICATLFGNIQKVVNYWLLHNGFSIGIGDT-IADASTMR-----DITNTISEA 498
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+ Q++++++ N L S + + R S+E S L+QA A + ++
Sbjct: 499 KQKV--QEIIIEAQQNTL-SPEPGMTLRE------SFEHNVSRVLNQARDTAGRSAEMNL 549
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
++L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 550 KDL--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPH 598
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D + +K + VENS+L GL P E F H++ R+ G + RRL
Sbjct: 599 FTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 653
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 654 VKALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 684
>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
Length = 886
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 157/583 (26%), Positives = 263/583 (45%), Gaps = 82/583 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPNI + E+G+P VA L + E++ WN ER+ I+ G
Sbjct: 321 GKRVDFSARTVISPDPNISIDEVGVPYDVAMILTVPEKVTKWNIERMREYVINGPDKWPG 380
Query: 378 ELYVCRKGGLVRIRRIDALELGD------------IIYRPLTDGDIVLINRPPSIHPHSL 425
YV R G RRID + D I+ R L DGDIV+ NR PS+H S+
Sbjct: 381 ANYVVRSDG----RRIDLRYVKDRKELAATLAPNFIVERHLVDGDIVIFNRQPSLHRISM 436
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+VLP +N L C P++ DFDGD ++ ++PQ+ A E EL+ + + ++
Sbjct: 437 MGHRVRVLP-GRTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAETKELMTVHRNILTP 495
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVW 542
+ G ++ QD ++ A+LL + LLS ++Q + ++ D+ + ++ ++
Sbjct: 496 RYGGPIIGSAQDYISGAYLLTVKTTLLSEDEVQTILGVAD---INKDLGEPAILAPKRLY 552
Query: 543 SGKQLFSMLLPPDFEYTFPS---------KD--------VYISGGKLISA--EGSSWLRD 583
+GKQ+ S LP +F + P+ KD V I GKL+ + +
Sbjct: 553 TGKQIVSHFLPEEFNFHGPANISSGVRSCKDEDCPHDSYVVIKRGKLLEGVFDKKALGNQ 612
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
++ +L++ Y D VL + +V ++ + G+T++LSD+ + + +
Sbjct: 613 QAESILHWLVREYDEDYVLWLMDNLFKVFLRYIELHGLTMTLSDVTIPEDATKK------ 666
Query: 643 IFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
I REA++ N + + ES S + L + + ++ +D
Sbjct: 667 ISEKAREARERVNDLIARYKKGELEVIPGRTLEESLESYILDTLDKLRNEAGEIATMHLD 726
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPH 761
F N+ M + G++G++L + Q + LG Q R
Sbjct: 727 PF------------------NNAYIMARTGARGSVLNITQMAAMLGQQSVRGE---RIKR 765
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA--- 818
S + D + A+ +I S SF +GLNP+E F H+ R+ D A
Sbjct: 766 GYSTRTLPHFKPNDISPEARGFIYS-----SFRSGLNPIETFFHAAGGRE-GLVDTAVRT 819
Query: 819 DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G + RRL+ + DL YDGTVR YG +++Q Y +G
Sbjct: 820 SQSGYMQRRLINALSDLRIEYDGTVRTLYG-EVIQTLYGGDGV 861
Score = 53.5 bits (127), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 8 EGLEVPSGILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTN 56
E +V I+ GI GI + E K+SV I G E V + RLG+ P
Sbjct: 3 ERYQVNEKIVKGIRFGILSPDEIRKMSVTAIITADVYDEDGTPIEGSVMDSRLGIIEPGQ 62
Query: 57 ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+C CG +C GHFG I+ ++H F+ + LL S C +C I+
Sbjct: 63 KCPVCGNVI-GSCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCKRCGRIK 111
>gi|110669633|gb|ABG81911.1| RNA polymerase II largest subunit [Mycoblastus sanguinarius]
Length = 1016
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 156/581 (26%), Positives = 268/581 (46%), Gaps = 86/581 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N P++ DFDGD ++ ++PQ+ R E++ L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTGPYNADFDGDEMNLHVPQSEETRAEVSGLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V LS Q+ + ++ P P IFK +W
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLSKEQVMNILLWVPDWDGVIPQPAIFK--PRPMW 507
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQ+ S+++P S + + +SGG+L+ + G ++I
Sbjct: 508 TGKQILSLVIPAGLNLLRGSNEGFTSLTDDGLLVSGGELMYGLFNKKSVGATGGGVIHII 567
Query: 594 KRYRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
Y +K ++F AQ V+ WL G ++ + D ++ +++
Sbjct: 568 --YNEKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNT-------------IQQ 612
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVF 707
+D N Q+ D +A ++E SL G ++ ++E + S AL++A DA
Sbjct: 613 IEDAVNRQK---DEVGEITRNATENE-LESLPGMNVRETFESEVSKALNKARDDAGTVTE 668
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PH 761
+++L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 669 NSLKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 720
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 721 ---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 766
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 767 ETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Glycine max]
Length = 1827
Score = 186 bits (473), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 269/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + ++G+P +A L E + +N ERL + +
Sbjct: 346 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 405
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 406 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 461
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 462 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 520
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + ++ + M+ + +P I K
Sbjct: 521 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILK 580
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+ +W+GKQ+F++++P T V I G+L++
Sbjct: 581 --PEPLWTGKQVFNLIIPKQINLIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKK 638
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL ++ + D + +
Sbjct: 639 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAST----- 693
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M+ I + A++ +QL+ ++ L ++E R++ S+E + + L++A
Sbjct: 694 -METINQTISAAKE--KVKQLIREAQEKKL----EAEPGRTMMD---SFENRVNQTLNRA 743
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA N A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 744 RDDA--------GNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 792
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 793 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 890
Score = 43.5 bits (101), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 20 ISLGISTDTEKEKLSVMEI--GAVSE--------VTNPRLGLPNPTNECSSCGAKDRKAC 69
+ GI + E ++SV++I G +E +++PRLG + +C +C A C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKLKCETCTAS-MAEC 76
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
GHFG ++ + H FL + ++ +C C I
Sbjct: 77 PGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKI 112
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1338 CHED---VDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1394
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1395 MTYRGHLMAITRHGI-----NRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIM 1449
Query: 1245 WGKVPSVGTG 1254
G++ +GTG
Sbjct: 1450 LGQLAPIGTG 1459
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 155/582 (26%), Positives = 265/582 (45%), Gaps = 71/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 357 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVEYG 416
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 417 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNRQP 472
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E++EL+ +
Sbjct: 473 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVSELMIV 531
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
K +++ QS R ++ + QD+L + + D+ + + M L + P +
Sbjct: 532 PKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPAIVK 591
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSSWL 581
+W+GKQ+FS+++P + V I G+L++ L
Sbjct: 592 PRPIWTGKQIFSLIIPKQINMVRTAAWHNDSETGDNSPGDTMVRIEKGELLTGTLCKKTL 651
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + + D FL Q ++ WL G ++ + D + S + + +
Sbjct: 652 GTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDTI--ADSATMEKIN 709
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
D IF E +D Q +S+ R++ S+E + + L++A
Sbjct: 710 DTIFKAKNEVKDLIKIAQ----------EKQLESQPGRTMME---SFENRVNQVLNRARD 756
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
+A + A K S+ N++ AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 757 EA--------GSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGK---RIP 805
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D ++ + VENS+L GL P E + H++ R+
Sbjct: 806 FGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTAVKT 860
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 861 SETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDG 901
Score = 44.3 bits (103), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+++PRLG + +C +CG C GHFG ++ + H FL + LL +C C
Sbjct: 52 LSDPRLGTIDRQTKCETCGGS-MAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCS 110
Query: 104 TI 105
I
Sbjct: 111 HI 112
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR+ +++ GI+A Q L L IS G + HL I+ + ++ G
Sbjct: 1352 VDATRTVSNHLIEVIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + + P ++ F + AA D+L+G + + G++ +
Sbjct: 1412 MAITRHGI-----NRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPI 1466
Query: 1252 GTG 1254
GTG
Sbjct: 1467 GTG 1469
>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
Length = 1013
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 158/586 (26%), Positives = 266/586 (45%), Gaps = 90/586 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPNI + ++G+P +A L E + +N +RL + + R
Sbjct: 272 LMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTYPETVTPYNIDRLQEYVRNGRDAY 331
Query: 376 KGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G +V R G + R L++G + R L D D+++ NR PS+H S++
Sbjct: 332 PGAKFVVRDNGEQINLQYNKQRGDFPLQIGYRVERNLIDDDVIIFNRQPSLHKMSMMGHR 391
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ+ +R E+ E+ + KQ I+ QS +
Sbjct: 392 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEESRAEIKEICMVPKQFISPQSNK 450
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QD+L A L + L M+ P +P I K +W+GKQ
Sbjct: 451 PVMGIVQDTLCAIRKFTRRDNFLDTDMIMLLMMWLPDWDGTLPTPCILK--PKPLWTGKQ 508
Query: 547 LFSMLLP------------PDFEYTFPS---KDVYISGGKLI------SAEGSSWLRDYE 585
++SM++P PD E T+ S VYI G+L+ G+S E
Sbjct: 509 IYSMVIPKGTNCYRESEGHPDGETTWISPGDTKVYIRDGELVCGMVCKKTVGTS-----E 563
Query: 586 GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G L + + + F Q V+ W G +V + D + + M+ +
Sbjct: 564 GGLVHTIFNEFGSESARRFFDGTQRVINNWFIHNGFSVGIGD------AVTDNATMENVG 617
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDA 702
E + ++ + +++ + G + S+E + + AL+ A DA
Sbjct: 618 TITNECY-----------ARVDRYIEEAQNDALECMPGMTIKESFEVRVNTALNNARDDA 666
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF 759
K V +++ N++ M AGSKG+ + + Q S C+G Q+ P F++
Sbjct: 667 GKQVLDRLKDT--------NNIAQMSLAGSKGSKINISQISACVGQQNVEGKRIPFGFKY 718
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH G + +S V NS+L GL P E + H++ R+
Sbjct: 719 RTLPH-----------FGKDDYSPES---RGFVRNSYLRGLTPQEFYFHAMGGREGLIDT 764
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDG++RN+ G+ IVQF Y +G
Sbjct: 765 AVKTAETGYIQRRLIKALEDIMCQYDGSIRNSQGH-IVQFVYGEDG 809
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 270/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 265 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 324
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 325 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 380
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 381 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 439
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 440 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILK 499
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P S V I G+L++
Sbjct: 500 --PRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDTQVRIERGELLAGTLCKK 557
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 558 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAST----- 612
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 613 -MEKINETISKAKNEV--KELIKAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 662
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 663 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 711
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 712 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 766
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 767 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 809
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 156/587 (26%), Positives = 271/587 (46%), Gaps = 75/587 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 349 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNMERLKELVEYG 408
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R + DGD VL NR P
Sbjct: 409 PHPPPGKTGAKYIIREDG----QRLDLRFLKRSSDRHLELGYKVERHMNDGDFVLFNRQP 464
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 465 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 523
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + P I K
Sbjct: 524 PKCVVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFYNILMWWEEFAGKIPIPTILK 583
Query: 536 ISKDSVWSGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P PD E S V I G++++
Sbjct: 584 --PRPLWTGKQIFTLIIPKQINLMRQAFWHPDSEVGDLSPGDTQVRIEKGEVVAGTLCKK 641
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L +G+L + + D FL Q ++ WL +G ++ + D +A + KI
Sbjct: 642 TLGTGQGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQGFSIGIGDT-IADAATMEKI 700
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ I + +D Q D + +++ R+++ S+E + + L++A
Sbjct: 701 -NETISIAKNDVKDLIKMAQ---DKQL-------EAQPGRTMKE---SFENRVNGVLNKA 746
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
+A A + S+ N+L AM AGSKG + + Q + C+G Q+ R
Sbjct: 747 RDEAGAS--------AQRSLSESNNLKAMVTAGSKGTFINISQMTACVGQQNVEGK---R 795
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 796 IPYGFVDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 850
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G +
Sbjct: 851 KTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDGMDS 896
Score = 41.2 bits (95), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+++PRLG + +C +C A C GHFG ++ + H FL + +L +C C
Sbjct: 52 LSDPRLGTIDRHTKCETC-AGSMAECPGHFGHLELAKPMFHIGFLKTVLSILRCVCHNC 109
>gi|123979328|gb|ABM81489.1| RNA polymerase II largest subunit [Ophioparma lapponica]
Length = 981
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 151/577 (26%), Positives = 269/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + +
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKTGPNDH 315
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 316 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 371
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 372 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 430
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q + ++ P + P + W+G
Sbjct: 431 QRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQAMNILLWVPDWDGVIPQPATLKPRPKWTG 490
Query: 545 KQLFSMLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P P E P+ D +++ GG+L+ G +++
Sbjct: 491 KQIISLVIPAGLNLIRPSSEGLSPANDDGLFVHGGELMYGLFMKKSVGASGGGIVHIVFN 550
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ D + F AQ ++ WL G ++ + D + + +KI ++
Sbjct: 551 EKGPDAAMKFFNGAQTLVNYWLLHNGFSIGIGDT-IPDRNTIQKI------------ENA 597
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V + SA ++ + +L G ++ ++E + S AL++A DA ++
Sbjct: 598 VNTQKADV---ADITQSATEN-TLEALPGMNVRETFESKVSKALNKARDDAGTATEESLK 653
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 654 DL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 701
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 702 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 751
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 752 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFIYGEDG 787
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 186 bits (472), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 269/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 267 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYG 326
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 327 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 382
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ E+ EL+ +
Sbjct: 383 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETXAEVXELMMV 441
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 442 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPTILK 501
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P S V I G+L++
Sbjct: 502 --PRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDTQVRIERGELLAGTLCKK 559
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 560 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAST----- 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 615 -MEKINETISKAKNEV--KELIKAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 664
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 665 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 713
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 714 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 768
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 769 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 811
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
Length = 1337
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 156/608 (25%), Positives = 274/608 (45%), Gaps = 98/608 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP +++ ++G+P +A+ L E + +N ERL+ +
Sbjct: 257 IRGNLMGKRVDFSARTVITPDPMLRIDQVGVPRSIAQNLTFPEIVTPFNIERLTELVKRG 316
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G ++ R+ G RID L+ G + R + D D V+ NR P++H
Sbjct: 317 ANQYPGAKFILRETG----DRIDLRYHPKSTDLHLQFGYRVERHMQDNDYVIFNRQPTLH 372
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N +P++ DFDGD ++ ++ Q++ R E+++L ++ +
Sbjct: 373 KMSMMCHRVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHLAQSLETRAEISQLASVKRM 431
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ R ++ + QDSLTA + + ++ ++ + M+ P + P I K
Sbjct: 432 IITPQANRPVMGIVQDSLTAVNKMTRRDTFITKDEIMNILMYLPGWAGKLPQPAILK--P 489
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISAEGSS 579
++W+GKQLFS+++P PD E P K V + GKL+S
Sbjct: 490 RALWTGKQLFSIIIPGRINVIRTHSTHPDDEDRGPHKWISPGDTKVLVEDGKLLSGILCK 549
Query: 580 WLRDYEGNLFQYLIKRY--RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
Q++I D DF Q V WL V G T+ ++D + + S
Sbjct: 550 KSLGASSGSLQHIIHHELGSDATADFYAYIQMVTNHWLLVTGHTIGIADTIADAKTYS-- 607
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAA 694
+I +++A+ + +++ +H + L + ++ + + L+ + ++ +
Sbjct: 608 ----DIQTAIKKAK--SDVVEVIEKAHNDELEPMPGNTLRQTFENQVNRILNDARDKTGS 661
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---S 751
L+Q S+ F N+ +M AGSKGN + + Q C+G Q+
Sbjct: 662 LAQKSLSEF------------------NNFKSMVVAGSKGNKINISQVIACVGQQNVEGK 703
Query: 752 LAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHS 806
P FR PH + Y P + VENS+L GL P E F H+
Sbjct: 704 RIPFGFRQRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHA 747
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
+ R+ G + RRL+ M + YDGTVRN Q++Q Y +G +
Sbjct: 748 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQI-EQLIQLRYGEDGLAGE 806
Query: 865 TGEIGDQP 872
E + P
Sbjct: 807 WVEFQNLP 814
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 156/580 (26%), Positives = 270/580 (46%), Gaps = 67/580 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + ++G+P +A L E + +N ERL + +
Sbjct: 346 IRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 405
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 406 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 465
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 466 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 524
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ Q+ R ++ + QD+L + + L+ + M+ + +P I +
Sbjct: 525 VSPQANRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILR--PR 582
Query: 540 SVWSGKQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISAE-GSSWLRD 583
+W+GKQ+F++++P + E F + V I G+L+S L
Sbjct: 583 PIWTGKQVFNLIIPKLINLIRFSAWHAETESGFITPGDTMVRIEKGELLSGTLCKKTLGT 642
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M++
Sbjct: 643 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAATMEK 696
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + A++ ++L+ + L + E R++ S+E + + L++A DA
Sbjct: 697 INETIGTAKN--EVKELIKQAQEKNL----EPEPGRTMME---SFENRVNQVLNKARDDA 747
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 748 --------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFG 796
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 797 FVDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 851
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 852 TGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 890
Score = 43.5 bits (101), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D TR+ +++ GI+A + L L IS G + HL I+ +T
Sbjct: 1338 CHED---VDSTRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDT 1394
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1395 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIM 1449
Query: 1245 WGKVPSVGTGG 1255
G++ +GTGG
Sbjct: 1450 LGQLAPIGTGG 1460
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 158/591 (26%), Positives = 275/591 (46%), Gaps = 91/591 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 305 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNG 364
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD++L NR PS+
Sbjct: 365 PDIHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDVILFNRQPSL 420
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL++L +
Sbjct: 421 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCLVPL 479
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 480 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPEWDGVLPQPAILK-- 537
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
W+GKQ+ SM+LP P E P D + + GG+L+ S +
Sbjct: 538 PRPRWTGKQIISMVLPSGLNLLRVDRDRVPLSEKFSPLTDSGLLVHGGELMYGMFSKKTV 597
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y D ++F AQ V+ WL G ++ + D + + +KI
Sbjct: 598 GATGGGIVHTIYNEYGPDVCMNFFNGAQTVVNYWLLHNGFSIGIGDT-IPDLATIQKI-- 654
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
++ ++ VDS ++A +E+T L G + ++E + S AL+
Sbjct: 655 ----------EEAVRIRKEEVDS-----ITASATENTLEPLPGMSVRETFESKVSRALNN 699
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---P 754
A +A +++L N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 700 ARDEAGTETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRIP 751
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 752 FGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGRE 797
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 798 GLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGEDG 847
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKL 161
C I+ ++ +Q + R+P + + + ++L SKD+ A E DE
Sbjct: 112 CGKIK--------ANTNDQKYLDGLRFRDPKRRFDAI-WRL-SKDVLICEADPPEEDEPF 161
Query: 162 SKKNKKLPDDYWG 174
K++ K+P + G
Sbjct: 162 GKESAKMPKGHGG 174
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 155/581 (26%), Positives = 272/581 (46%), Gaps = 81/581 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPNI + E+G+P + L E +N +N + L ++ E
Sbjct: 276 LMGKRVDFSARTVITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEY 335
Query: 376 KGELYVCRKGG-LVRIRRIDA-----LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G V R G +V ++ L +GD + R L DGD ++ NR PS+H S++
Sbjct: 336 PGANRVIRANGDIVSLKHTAGSGETLLNIGDRVERHLVDGDYIIFNRQPSLHKMSMMGHK 395
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ + PQ+ R E+ E++ + +Q+I+ + +
Sbjct: 396 VRVMPFST-FRLNLSVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIISPKHNQ 454
Query: 490 NLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLF 548
++ + QD+L + D+ L + M L + P + +W+GKQ+
Sbjct: 455 PVMGIVQDTLCGIRKFTIRDNFLSRDMVMNILMWVEDWDGVIPLPAIVKPVPLWTGKQMM 514
Query: 549 SMLLPP----DFEYTFPSKD----------VYISGGKLISAE------GSSWLRDYEGNL 588
S+ +P F T P + V I GG ++S GSS G +
Sbjct: 515 SLAIPDINLVGFSATHPDDEKGDMSVGDTKVIIEGGTILSGTMCKKTVGSS-----AGGV 569
Query: 589 FQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
++ + D F Q+++ WL G +V + D + + + M I +
Sbjct: 570 IHTIMNEHGPDAAKKFFNGTQKIVNYWLLHNGFSVGIGD------TIADGVTMQSITDTI 623
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
++A+ + +++ ++ N L D+E +++ ++E + + L++A DA K
Sbjct: 624 KKAK--ADVAEIIKNAQANKL----DAEPGMTVRE---TFESKVNKVLNKARDDAGKK-- 672
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PH 761
A K N++ M AGSKG+ + + Q + C+G Q+ P FR+ PH
Sbjct: 673 ------AEKSLKIYNNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPYGFRYRTLPH 726
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D++ ++ + VENS+L GL+P E F H++ R+
Sbjct: 727 ---------FTKDDHSPESRGF-----VENSYLRGLSPQEFFFHAMGGREGLIDTAVKTA 772
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 773 ETGYIQRRLVKALEDVMVKYDGTVRNSLGH-VVQFVYGEDG 812
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 216/896 (24%), Positives = 368/896 (41%), Gaps = 150/896 (16%)
Query: 76 IKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKERQKGAGSSRKEQPRVCKY 126
I+ + H FL+ K++ +C P I++ K G RK +
Sbjct: 2 IELAKPVFHVGFLTKTIKIIRCVCFYCSKLLVSPNNPKIKEVILKTKGQPRKRLAAIYDL 61
Query: 127 CV-RNPAQWYPRMRFKLSSKDLSGKTAIIV------EIDEKLSKKNKKLPDDYWGFIPFD 179
C +N + M +DLS A V K+ + L + W + D
Sbjct: 62 CKGKNICEGGDEMDMARDQEDLSLSQAKKVGHGGCGRYQPKIRRIGLDLTAE-WKHVNED 120
Query: 180 AQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-------LKCFPVTPNN 232
+Q+ + L+ ++V + K + S E IL D F L PV P N
Sbjct: 121 SQER-------KLTLTAERVHEIFKHI--SDEECHILGMDPKFARPDWMILTVIPVPPLN 171
Query: 233 HRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE------LSHLVQDCLKISKLH-- 284
R T + F K D+ T L ++ I +H++ + +++ + H
Sbjct: 172 VRPTVI--MFGSAKG--HDDLTYKLGDIIKANNELIRNEESGAAAHIIHENIRMLQFHVA 227
Query: 285 ---------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPN 335
L ++ +K V+ K+ + G I+ ++GKR D R V+T DPN
Sbjct: 228 TMVDNDMPGLQRAMQKSGRPVKSIKS-RLKGKEG--RIRGNLMGKRVDFSARTVITPDPN 284
Query: 336 IKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIRRID 394
+++ ++G+P +A+ L E + N +L+ + + G Y+ R+ G RID
Sbjct: 285 LRIDQVGVPRSIAQNLTFPEMVTPLNHAKLTELVQRGNSQYPGAKYIIRENG----ERID 340
Query: 395 A----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPL 444
L+ G + R + DGD+V+ NR P++H S++ V+VLP S+ +N
Sbjct: 341 LRYHPKTTDLHLQFGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTF-RMNLS 399
Query: 445 CCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHL 504
C +P++ DFDGD ++ ++ Q++ R EL + +Q+I Q+ R ++ + QD+L A
Sbjct: 400 CTTPYNADFDGDEMNLHVAQSLETRAELENIHITPRQIITPQANRPVMGIVQDTLCAVRK 459
Query: 505 LMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-------- 553
+ + V L QM L M+ P + P I K +W+GKQLF++++P
Sbjct: 460 MTKRDVFLEKEQMMTLLMYLPTWDGKLPQPAILK--PKPLWTGKQLFTLIIPGKVNMMKT 517
Query: 554 ----PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYRDKVL 601
PD E P K + K++ G L G++ + +
Sbjct: 518 HSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSILHIIFLELGHDIC 577
Query: 602 DFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLM 660
Y Q V+ WL G ++ + D + + I +++A++ + ++
Sbjct: 578 GKFYGNIQTVVNNWLLYEGHSIGIGDTIADPQT------YNSIQTTIKKAKE--DVIDVI 629
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
+H N L + + ++E Q + L+ DA +N +Y
Sbjct: 630 TKAHNNELEPTPGNTLRQ-------TFENQVNRILN----DARDKTGGSAKNSLTEY--- 675
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAG 774
N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 676 -NNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK---------- 724
Query: 775 DNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
Y P + VENS+L GL P E + H++ R+ G + RRL+
Sbjct: 725 ------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIK 778
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
M AYDGTVRN+ G Q++Q Y +G + E P LS A E+ Y
Sbjct: 779 AMEACMVAYDGTVRNSVG-QVIQLRYGEDGLAGELVEFQSLPTIKLSNRAF-ESKY 832
>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
Length = 1565
Score = 186 bits (472), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 270/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 394 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 453
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 454 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 509
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 510 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 568
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 569 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILK 628
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V I G+L++
Sbjct: 629 --PRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKK 686
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 687 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAA 740
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 741 TMEKINETISKAKN--EVKELIRAAQERQL----EAEPGRTMME---SFENRVNQVLNKA 791
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 792 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 840
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 841 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 895
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 896 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 938
Score = 41.6 bits (96), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEVT-----------NPRLGLPNPTNECSSCGAKDRKA 68
+ GI + E ++SV++I SE T +PRLG + +C +C A +
Sbjct: 18 VQFGILSPDEIRQMSVVQIEH-SETTERGKPKPGGLSDPRLGTIDRKMKCETCTA-NMAE 75
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG ++ + H F+ + ++ +C C I
Sbjct: 76 CPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKI 112
>gi|71423780|ref|XP_812569.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70877365|gb|EAN90718.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
Length = 1731
Score = 186 bits (472), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 152/574 (26%), Positives = 266/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L ER+++ N +RL+ + R +
Sbjct: 331 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVR-RPVYP 389
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 390 SANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 449
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 450 RVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 508
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ + P + K +W+GKQ+FS
Sbjct: 509 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLK--PRPLWTGKQVFS 566
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYE-GNLFQYLI-KRYRD 598
++LP P FP D + I G+L+ + + G+L + +R D
Sbjct: 567 LILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSD 626
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + +L G +V + D + + + M+E+ RE +
Sbjct: 627 EVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQ---MNEVLVKTRENVEKIGAAA 683
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N + L + M L S+E ++AL++ +A K +++
Sbjct: 684 NNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 724
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 725 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 772
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 773 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 825
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA +++QF Y +G
Sbjct: 826 KLIKALEDVHAAYDGTVRNA-NQELIQFMYGEDG 858
Score = 45.1 bits (105), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++I+ TR+ + + C GI+A L L A G NI H I+ +T+ G
Sbjct: 1329 NIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRG 1388
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S +S P ++ F + AA G D ++G L G
Sbjct: 1389 YLMAVSRVGI----NRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQA 1444
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1445 RIGT-GLFDLV 1454
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 269/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 346 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 405
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 406 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 461
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 462 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 520
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 521 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILK 580
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V I G+L++
Sbjct: 581 --PRPLWTGKQVFNLIIPKQINLLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKK 638
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D + +
Sbjct: 639 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAA 692
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 693 TMEKINETISKAKN--EVKELIRAAQERQL----EAEPGRTMME---SFENRVNQVLNKA 743
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 744 RDDAGSS--------AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 792
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 793 IPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 847
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 890
Score = 41.6 bits (96), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEVT-----------NPRLGLPNPTNECSSCGAKDRKA 68
+ GI + E ++SV++I SE T +PRLG + +C +C A +
Sbjct: 18 VQFGILSPDEIRQMSVVQIEH-SETTERGKPKPGGLSDPRLGTIDRKMKCETCTA-NMAE 75
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG ++ + H F+ + ++ +C C I
Sbjct: 76 CPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKI 112
>gi|22002086|gb|AAK97604.2|AF372503_1 RNA polymerase II largest subunit [Trypanosoma cruzi]
Length = 1731
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 152/574 (26%), Positives = 266/574 (46%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L ER+++ N +RL+ + R +
Sbjct: 331 LMGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVR-RPVYP 389
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 390 SANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 449
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 450 RVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 508
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ + P + K +W+GKQ+FS
Sbjct: 509 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPVPAVLK--PRPLWTGKQVFS 566
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYE-GNLFQYLI-KRYRD 598
++LP P FP D + I G+L+ + + G+L + +R D
Sbjct: 567 LILPEVNHPATPQERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSD 626
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q + +L G +V + D + + + M+E+ RE +
Sbjct: 627 EVARFINGVQRITTFFLINFGFSVGVQDTVADADTLRQ---MNEVLVKTRENVEKIGAAA 683
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N + L + M L S+E ++AL++ +A K +++
Sbjct: 684 NNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 724
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 725 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 772
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 773 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 825
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA +++QF Y +G
Sbjct: 826 KLIKALEDVHAAYDGTVRNA-NQELIQFMYGEDG 858
Score = 45.1 bits (105), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
++I+ TR+ + + C GI+A L L A G NI H I+ +T+ G
Sbjct: 1329 NIINATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRG 1388
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ ++ G+ S +S P ++ F + AA G D ++G L G
Sbjct: 1389 YLMAVSRVGI----NRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQA 1444
Query: 1250 SVGTGGHFDII 1260
+GT G FD++
Sbjct: 1445 RIGT-GLFDLV 1454
>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
Length = 1015
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 160/592 (27%), Positives = 271/592 (45%), Gaps = 93/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N RL + +
Sbjct: 268 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNG 327
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD +L NR PS+
Sbjct: 328 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSL 383
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 384 HKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 442
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 443 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILK-- 500
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWL 581
WSGKQ+ SM+LP KD V + GG+L+ S +
Sbjct: 501 PRPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTV 560
Query: 582 RDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y D + F AQ V+ WL G ++ + D +
Sbjct: 561 GASGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLET------- 613
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
+++ ++ ++ VDS ++A +E+T +L G ++ ++E + S AL+
Sbjct: 614 ------IQKIENAVRVRKEEVDS-----ITASATENTLEALPGMNVRETFESKVSRALNN 662
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A +A A + KD N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 663 ARDEA---------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRI 713
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 714 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 759
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 760 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDG 810
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 214/948 (22%), Positives = 386/948 (40%), Gaps = 175/948 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRP-----LTDGDIVLINRPPSIHPHSLIALT 429
G RID L+ G + P + DGDIV+ NR P++H S++
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKAFPPQVERHMCDGDIVIFNRQPTLHKMSMMGHR 478
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R
Sbjct: 479 VRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNR 537
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QD+LTA + V L ++ L MF + P + K +W+GKQ
Sbjct: 538 PVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAVLK--PRPLWTGKQ 595
Query: 547 LFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEG 586
+FS+++P PD E + P K + K++ G L G
Sbjct: 596 IFSLIVPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAG 655
Query: 587 NLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+L V Y+ Q V+ WL + G T+ + D S + +I
Sbjct: 656 SLVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQN 709
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDA 702
+++A+ + +++ +H N L + ++ + + L+ + ++ + +Q S+
Sbjct: 710 TIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSE 767
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
+ N+ +M +G+KG+ + + Q +G Q+ P F+
Sbjct: 768 Y------------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKH 809
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 810 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLI 853
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 DTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 900
>gi|397135898|gb|AFO11444.1| RNA polymerase I, partial [Scheffersomyces stipitis]
Length = 872
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 159/570 (27%), Positives = 265/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDNFIDYDQVMNMLYWIPNWDGVIPPPAIAKPKPLWTG 387
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDGGKDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V WL G ++ + D +A S M +I + EA+
Sbjct: 448 REKGPRVCAQLFSSIQKVTNYWLLHNGFSIGIGDT-IADVST-----MKDITSTISEAK- 500
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 501 -IKVQEIILDAQSNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P S
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFSDRTLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFVYGEDG 685
>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
Length = 868
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 155/570 (27%), Positives = 266/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIHRLTQLVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R + DGD L NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHIDDGDPXLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L + Q+I+
Sbjct: 269 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIISP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L L + + Q+ L + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKLTKRDTFVEFDQVMNLLFWIPDWDGVVPQPAVLKPKPLWTG 387
Query: 545 KQLFSMLLPPD-FEYTFPSKD---------VYISGGKLI-SAEGSSWLRDYEGNLFQYLI 593
KQ+ S+ +P F F ++ + I+ G++I + G L ++
Sbjct: 388 KQIVSLCIPKGIFMQRFDDQNPITSPKDNGMLIAKGEVIYGVVDKKTVGATAGGLIHTIM 447
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ ++ +F Q+V+ WL G ++ + D + + M +I + EA++
Sbjct: 448 REKGPQICCNFFGNLQKVVNYWLLHNGFSIGIGD------TIADAATMKDITNTIAEAKN 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++++ N L E +L+ S+E S L+QA A + ++
Sbjct: 502 KV--QEIILEAQANKLA----PEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKE 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M AGSKG+ + + Q S C+G Q R P +
Sbjct: 553 L--------NNVKQMVIAGSKGSFINISQMSACVGQQIVEGK---RIPFGFQDRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D++ +K +I ENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDHSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 657 ALEDVMVQYDGTTRNSLGD-VIQFVYGEDG 685
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 159/590 (26%), Positives = 269/590 (45%), Gaps = 87/590 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 265 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 324
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 325 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 380
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 381 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 439
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P + K
Sbjct: 440 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAVLK 499
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P S V I G+L++
Sbjct: 500 --PRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDTQVRIERGELLAGTLCKK 557
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL G ++ + D +A + KI
Sbjct: 558 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDT-IADAATMEKI 616
Query: 639 ------LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
+E+ ++ AQD +QL ++E R++ S+E + +
Sbjct: 617 NETISKAKNEVKELIKAAQD----KQL-------------EAEPGRTMME---SFENRVN 656
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSL 752
L++A DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 657 QVLNKARDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 708
Query: 753 APLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
R P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 709 GK---RIPYGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREG 760
Query: 813 SFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 761 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 809
>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
Length = 1003
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 169/692 (24%), Positives = 307/692 (44%), Gaps = 82/692 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N ++L + E
Sbjct: 264 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEH 323
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS H S+
Sbjct: 324 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSXHKESM 379
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 380 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 438
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + +W+G
Sbjct: 439 QRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLWVPEWDGIIPQPAVLKPTPLWTG 498
Query: 545 KQLFSMLLPPDFEYT-----FPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYLI-KR 595
KQ+ S+++P P KD +++S G+L+ + G + + ++
Sbjct: 499 KQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGIIHIVYNEK 558
Query: 596 YRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+ ++F AQ V+ WL G ++ + D + L++E + ++
Sbjct: 559 GPEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETIR---LIEEAVNA--QKREVAE 613
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
Q+ +S ++ L E ++E + S AL++A DA +++L
Sbjct: 614 ITQMATESRLDTLPGMNVRE----------TFESRVSKALNKARDDAGTVTEDSLKDL-- 661
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSCAAWN 769
N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 662 ------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH-------- 707
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRR 827
D + ++ + VENS+L GL P E F H++ R+ G + RR
Sbjct: 708 -FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 761
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYS 887
L+ + D+ YDGT+RN+ G+ IVQF Y +G I Q L S+A +
Sbjct: 762 LVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLD--GAHIEPQ---RLDIIVCSDAKFE 815
Query: 888 ALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHL 947
D I L++ +P + + + AD + L + + + E+ K+
Sbjct: 816 K-DFRIDLMDDNPRTTVSAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKNKKDDS 874
Query: 948 ECLML----SDIVSTSMIIYSPQTGSMKHFSP 975
+ L L I+ T+M ++ + GS + P
Sbjct: 875 QDLQLPLNIPRILETAMTTFNIKNGSRSNLHP 906
>gi|397135960|gb|AFO11475.1| RNA polymerase I, partial [Dipodascus albidus]
Length = 870
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 156/568 (27%), Positives = 261/568 (45%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L ++G+P +A L E + +N +L+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLDLDQVGVPRSIARTLSYPETVTPYNIHKLTQYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ + Q+I
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICLVPLQIITP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + + + QD+L L + + + M + + P + P+ + +W+G
Sbjct: 328 QSNKPCMGIVQDTLCGIRKLTKRDSFIDYEHMMNILFWIPGWNGVVPEPAIVKPKPLWTG 387
Query: 545 KQLFSMLLPP-------DFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIK- 594
KQ+ + +P D P D + + G + + G L + +
Sbjct: 388 KQIIAQCIPDGIHIRRLDKSPLSPEDDGMLIVKGEIMYGVINKKTIGASAGGLIDVIFRE 447
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ +K DF Q+V+ WL G ++ + D + + M I + EA+
Sbjct: 448 KGPEKCRDFFGNIQKVVNFWLLHNGFSIGIGD------TIADGATMRHITETISEAK--S 499
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q+++ + +N L + E +L+ S+E+ S L+QA +A K ++ L
Sbjct: 500 KVQEIINAAQLNKL----EREQGMTLRE---SFEQNVSRTLNQARDNAGKSAEKSLKEL- 551
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M +GSKG+ + + Q S C+G Q R P+ +
Sbjct: 552 -------NNVKQMVISGSKGSFINISQMSACVGQQIVEGK---RIPYGFADRTLPHFTKD 601
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K +I ENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 602 DYSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 656
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 657 EDVMVQYDGTVRNSLGD-ILQFVYGEDG 683
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 186 bits (471), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 156/586 (26%), Positives = 266/586 (45%), Gaps = 82/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L ++
Sbjct: 351 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANG 410
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L RR +L G + R L DGDI+L NR PS+H S+
Sbjct: 411 PNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESM 470
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L + +++
Sbjct: 471 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALVPLNIVSP 529
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V LS Q+ + ++ P P I K W
Sbjct: 530 QRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNIMLWVPDWDGVIPPPAILK--PRPRW 587
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I GG+L+ S + G
Sbjct: 588 TGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVGASGG 647
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y D + F AQ ++ WL G ++ + D + I + I
Sbjct: 648 GVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIGIGD------TIPDAITIQRIEN 701
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQASVDA 702
+RE + ++A +E+T L G ++ ++E + S AL+ A +A
Sbjct: 702 CVRERKKEVE------------AITASATENTLEPLPGMNVRETFESKVSRALNNARDEA 749
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 750 GSETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKY 801
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 802 RTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDT 847
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYGEDG 892
Score = 48.9 bits (115), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ + KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCG 113
Query: 104 TIRKE 108
I+ +
Sbjct: 114 KIKAD 118
>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
strain Ankara]
gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
annulata]
Length = 1678
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 230/924 (24%), Positives = 391/924 (42%), Gaps = 168/924 (18%)
Query: 26 TDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHP 85
T TE + + + G ++++ R+G +P + C +C + D K C GHFG I + H
Sbjct: 41 TLTELYREGIPQTGGLNDL---RMGTTDPRHICLTC-SMDLKYCPGHFGHIVLAKPMYHY 96
Query: 86 YFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSK 145
F+ + K+L +C C KE PRV + +++P+ F+L+
Sbjct: 97 GFMMTVLKILRCVCFNCSKFLLN---------KEDPRV-QLILKSPSS-----SFRLNHL 141
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205
+ ID ++ N K+ + G+ Q PN + ++ LL++
Sbjct: 142 SELCSASRTCRID---TQSNSKI--EGCGY----PQPSYTKEGPNLMIQFSQKQRELLEE 192
Query: 206 VD--------PSIREE-----------------FILSKDAP---FLKCFPVTPNNHRVTE 237
D P EE F+ + P L+ PV P R
Sbjct: 193 ADEQCNDIKRPLTPEEAFKVLRGITLEDMKCLGFVPERSQPCWLILQVLPVPPPAVR-PY 251
Query: 238 VPHAFSHEK-----KLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKD 292
V + + KL T +L K D R H++Q+ ++ + H+ D
Sbjct: 252 VQYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRA---TAPHIIQEMCQLLQFHITTLFDND 308
Query: 293 S-----AEVRQKKNIDISNSSGLRW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
A R KK I S + L+ ++ ++GKR D R V+TGDPNI + IG+
Sbjct: 309 IPGMPIASTRSKKPIK-SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGV 367
Query: 344 PCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG----LVRIRRIDALEL 398
P +A L E +NS N+E L + + G Y+ R G L +++ L+L
Sbjct: 368 PKSIAMTLTFCETVNSLNYESLRKKVETGPHDWPGAKYIIRDDGTRFDLRHVKKSSELQL 427
Query: 399 --GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGD 456
G + R + DGD +L NR PS+H S++ K+LP S+ +N +P++ DFDGD
Sbjct: 428 EYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTF-RLNLSVTTPYNADFDGD 486
Query: 457 CLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQ 516
++ ++ Q R E+ L+ + KQ+++ Q R ++ + QDSL A + L+ +
Sbjct: 487 EMNLHLVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDE 546
Query: 517 MQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLI 573
+ L ++ P+ + P IF ++W+GKQ+ S+LL + + ++ G +
Sbjct: 547 LMSLLIWIPYWDGKLPQPAIF--FPKNLWTGKQVISVLLTFNQSQGITNINLIRDGTIKL 604
Query: 574 SAEGSS--------WLRDYE---------------GNLFQYLIKRY-RDKVLDFLYAAQE 609
+ + +R E G+L L +K DFL Q+
Sbjct: 605 DKDNLNCSINDSRVIIRKNEHLSGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLTTLQK 664
Query: 610 VLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLM 669
V+ W G TVS SD+Y CS L ++++ L +++ Q+L++ + L
Sbjct: 665 VVNNWFLQIGFTVSCSDIY-----CSESTL-NKVYRILDKSKK--EVQKLVLQAQKGKLK 716
Query: 670 SAKDS---ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLA 726
ES + + L+ +++S ++ +S+ NL N++L+
Sbjct: 717 CQPGKSLFESFEARVNKELNDAREQSGSVVASSL-----------NLT-------NNILS 758
Query: 727 MFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECA 780
M +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 759 MVNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHFIK---------------- 802
Query: 781 KSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLC 836
Y P + V NS+L+GL P E F H++ R+ G + RRL+ M D+
Sbjct: 803 HDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIKAMEDVM 862
Query: 837 TAYDGTVRNAYGNQIVQFSYNIEG 860
YD T RN G +I+QF Y +G
Sbjct: 863 VQYDRTARNGNG-EILQFLYGEDG 885
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D+T++ +++ +GI+A + L + + IS G + HL ++ + ++ G
Sbjct: 1336 VDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYL 1395
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + P ++ F + + AA G VD+L+G + + G++
Sbjct: 1396 MSITRHGI-----NRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTENVIVGQLSPY 1450
Query: 1252 GTGGHFDII 1260
GTG FDI+
Sbjct: 1451 GTGA-FDIM 1458
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 160/583 (27%), Positives = 257/583 (44%), Gaps = 86/583 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + ++G+P +A L E + + N ERL + E
Sbjct: 246 LMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETVTAANQERLQQLVRNGPTEH 305
Query: 377 -GELYVCRKGGLVRIRRID---------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G Y+ R+ G RID +L++G + R L D D V+ NR PS+H ++
Sbjct: 306 PGARYIIRENG----DRIDLRYSNRSEVSLQVGYRVERHLMDDDFVIFNRQPSLHKMGMM 361
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +Q+++ Q
Sbjct: 362 GHRVKVMPFSTF-RLNLSVTSPYNADFDGDEMNLHVPQSHETRAEIMELCMVPRQIVSPQ 420
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWS 543
++ + QD+L L L+ M+ + M+ P+ P I K +W+
Sbjct: 421 KNAPVMGIVQDTLCGIRKLTRRDCFLTMDLMKNILMWVPNWDGVVPMPAILKPV--PLWT 478
Query: 544 GKQLFSMLLP-----------PDFEYTFPSKD---VYISGGKLI------SAEGSSWLRD 583
GKQ S++LP PD E+T S V I G+L+ GSS
Sbjct: 479 GKQAISLVLPKVNMIGFHSQHPDGEHTLVSPGDTRVQIEEGELLMGILCKQTVGSS---- 534
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G + + ++ F AQ V+ WL G ++ + D + + MD
Sbjct: 535 -SGGIIHIAMNDLGHEQCKMFFEGAQAVVNYWLLHNGFSIGIGD------TITDATTMDH 587
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKD---SESTRSLQGEHLSYEKQRSAALSQAS 699
+ + A+ ++++ + L ES SL L ++R+ A S S
Sbjct: 588 VNLTIESAK--LEVEKIIATAQAGTLQRKPGMTVRESFESLVNYELGRARERTGARSTNS 645
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
+ + N+ M AGSKG+ + + Q C+G Q+ R
Sbjct: 646 L------------------REQNNFKQMVVAGSKGSNINISQIMACVGQQNVEGK---RI 684
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P + D++ ++ + VENS+L GL P E F H++ R+
Sbjct: 685 PFGFKGRTLPHFKKDDHSPQSRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVK 739
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YD TVR+A GN IVQF Y +G
Sbjct: 740 TAETGYIQRRLVKALEDLSVKYDSTVRDAVGN-IVQFVYGDDG 781
>gi|397135810|gb|AFO11400.1| RNA polymerase I, partial [Ogataea glucozyma]
Length = 870
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 163/595 (27%), Positives = 278/595 (46%), Gaps = 77/595 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLSYPEIVTPYNIQKLTELVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRFNKRAGDIQLQYGWKVERHLMDEDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMCFWIPNWDGVVPQPAILKPKPLWSG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ SM +P D P S + ++G + + + G L +++
Sbjct: 388 KQILSMCIPRGIFLQRLDGSLLSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTVMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
V L+ Q+V+ WL G ++ + D + S + K + + I A
Sbjct: 448 KGPTVCAQLFGNIQKVVNYWLLHNGFSIGIGDAI--ADSATMKTITETI------AVAKE 499
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q++++D+ N L+ A+ + R S+E++ S L++A A K +++
Sbjct: 500 KVQEVIIDAQNN-LLEAEPGMTVRE------SFEQKVSKLLNEARDSAGKSAETSLKD-- 550
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAW 768
N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 551 ------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPH------- 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 --FTKDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 650
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSY---NIEGTSTPTGEIGDQPVGSLSA 878
RL+ + D+ YDGT RN+ G+ I+QF Y I+GT + P GSL+A
Sbjct: 651 RLLKALEDIMVHYDGTTRNSLGD-IIQFLYGEDGIDGTQVEKQTVDTIP-GSLAA 703
>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
Length = 1605
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 233/952 (24%), Positives = 404/952 (42%), Gaps = 183/952 (19%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTN--PRLG----LPNPTNE----CSS 60
E+ + ++ I G+ + E K SV++I + N P+ G L T E CSS
Sbjct: 4 EIVTKRISSIQFGLFSPEEIRKSSVVQIIHPETMENGFPKSGGLIDLKMGTTERAFLCSS 63
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC-------KTIRKE----- 108
C KD +C GHFG I+ + H +++ I K+L +C C K ++K+
Sbjct: 64 C-EKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLKKDLNFVW 122
Query: 109 -------------RQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV 155
+ G +QP + K + + F ++ GK ++
Sbjct: 123 NISKTKSVCEGEIGENGFTGCGNKQPVIKK-------EGMSLIAFMKGEEESDGK---VI 172
Query: 156 EIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFI 215
E++ KK+ ++ F+ FD + KP +L+ V V PSI E +
Sbjct: 173 LNGERVHNILKKIVNEDAVFLGFD----QKFTKPEWLILTVLLVP--PPSVRPSIVMEGM 226
Query: 216 LSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR-DIELSHLV 274
L + H++ ++ A ++ KK + H+ + DY ++ ++
Sbjct: 227 LRAEDDL---------THKLADIVKANTYLKKYELEGAPGHVVR--DYEQLLQFHIATMI 275
Query: 275 QDCLKISKLHLDKSSR---KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
+ + L KS R SA ++ K+ ++ ++GKR D R V+T
Sbjct: 276 DNDISGQPQALQKSGRPLKSISARLKGKEG----------RVRGNLMGKRVDFSARSVIT 325
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
DPNI ++E+G+P ++A+ E + +N +RL+ +S E G YV R G
Sbjct: 326 PDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVIRNDG---- 381
Query: 391 RRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTIN 442
+RID LE G ++ R + DGD+VL NR PS+H S++A V+V+ +N
Sbjct: 382 QRIDLNFNRGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVME-GKTFRLN 440
Query: 443 PLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAA 502
C SP++ DFDGD ++ ++PQ+ ++ EL EL + KQ+++ QS + ++ + QDSLTA
Sbjct: 441 LSCVSPYNADFDGDEMNLHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTAL 500
Query: 503 HLL-MEDSVLLSHLQMQQLQMFCPHRF-----------------------LSPDIFKISK 538
L + DS MQ L + + S +I KI
Sbjct: 501 RLFTLRDSFFDRRETMQLLYSVNINNYEFTDSSKLIMTHDDSFGNNLHTEESSNIMKILN 560
Query: 539 -------DSVWSGKQLFSMLLP-------------PDFEYTFPSKDVYISGGKLIS---- 574
+W+GKQ+ S +LP D E S V I G+++S
Sbjct: 561 FPAISYPKKLWTGKQILSYILPNTIYNGKSNEHNEEDLENVEDSY-VIIRNGEILSGIID 619
Query: 575 --AEGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWL-SVRGMTVSLSDLYLA 630
A GS+ +G L + + D+V F AQ+++ + ++ ++ + D
Sbjct: 620 KKAVGST-----QGGLIHIIANDFGPDRVTCFFDDAQKMMNLYFATINAFSIGIGD---- 670
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ 690
+ + K M ++ + A++ N +++V + N L S + + ++Y
Sbjct: 671 --AIADKETMSQVQRSIETAKEQVN--EIIVKAQKNKLERLPGMSMRESFESQ-VNYILN 725
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
+ +S AS A K S N++ M AGSKG+ + + Q + CLG Q+
Sbjct: 726 KPRDISGAS--------------ASKSLSFCNNMRTMVLAGSKGSFINISQVTACLGQQN 771
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
R P + + D + ++ + VENS++ G+ P E F H++ R
Sbjct: 772 VEGK---RIPFGFNYRSLPHFSKADYSGKSRGF-----VENSYVKGITPEEFFFHAMGGR 823
Query: 811 DS--SFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + G + RRL+ M D D +VR A G I Q+ Y +G
Sbjct: 824 EGLIDIAIKTAETGYIQRRLVKAMEDATVTLDRSVRGADG-FIYQYEYGEDG 874
>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
Length = 1014
Score = 185 bits (470), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 159/580 (27%), Positives = 277/580 (47%), Gaps = 71/580 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+TGDPN+ + ++G+P +A L E + +N ++ ++
Sbjct: 266 IRGNLMGKRVDFSARTVITGDPNLSVDQVGVPRSIAMTLTFPEMVTRFNIAQMRRLVANG 325
Query: 373 L-LEKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G + R G +RID LE+G I R + DGD++L NR PS+H
Sbjct: 326 PNVHPGARTIIRDDG----KRIDLRFVKKSSDQHLEVGYRIERHIHDGDVILFNRQPSLH 381
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A ++V+P S+ +N C +P++ DFDGD ++ ++PQ++ R E E++ +Q
Sbjct: 382 KMSIMAHKIRVMPWSTF-RLNLSCTTPYNADFDGDEMNLHVPQSMMTRAEALEIMLCPRQ 440
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKD-S 540
+++ Q+ + ++ + QD+L L + + M + + I I K
Sbjct: 441 IVSPQANKPVIGIVQDTLLGCMKFTYRDNFLDKAMVFNILMHLENWDGTVPIPCILKPVP 500
Query: 541 VWSGKQLFSMLLP-----------PDFEYTFPSKD---VYISGGKLI-SAEGSSWLRDYE 585
+WSGKQ+FS+++P PD E+T S + V I G+L+ + +
Sbjct: 501 LWSGKQIFSLIIPRVNMERKANGHPDSEHTVMSVNDTRVRIEQGQLLMGVVDKQTVGNTP 560
Query: 586 GNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G+L + + FL Q+V+ +L G +V + D + +++I
Sbjct: 561 GSLIHVIWNECGFEATRQFLAECQKVVNYFLMHYGFSVGIGDTIAPPST------LEKIE 614
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL-SYEKQRSAALSQASVDAF 703
+++A+ +N + A R +L S+E Q + L++A+ DA
Sbjct: 615 STIKQAKKEV----------LNLIKKAXSGNLDRQPGSTNLESFENQVNGVLNKAADDAG 664
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH-SLAPLSFRFPHE 762
K V + +K N++ AM AGSKGN + + Q C+G Q+ S + F F H
Sbjct: 665 KSVKAQL--------TKMNNINAMVSAGSKGNAINICQIIACVGQQNVSGKRIPFGF-HG 715
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
+ +N+ GD + +K + V NS+L GL P E F H++ R+
Sbjct: 716 RTLPHFNK---GDLSPESKGF-----VSNSYLQGLTPQEFFFHAMGGREGLIDTAVKTAE 767
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YD TVRN+ G+ I+QF+Y +G
Sbjct: 768 TGYIQRRLVKAMEDVMIKYDATVRNSLGD-IIQFAYGEDG 806
>gi|119643929|gb|ABL85595.1| RNA polymerase II largest subunit [Xanthoria polycarpa]
Length = 1020
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 161/592 (27%), Positives = 269/592 (45%), Gaps = 78/592 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHELVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRIDAL---ELGDI-------IYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID GDI + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDSG----ERIDLRHHKRAGDINLAYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+++L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCMVSLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q ++ + QD+L + + V+LS Q+ + ++ P + P + W+G
Sbjct: 450 QRNWPIMGIVQDTLCGIYKMCRRDVVLSEAQVMNILLWVPDWDGVIPQPAILKPQPRWTG 509
Query: 545 KQLFSMLLPPDFEYT-------------FPSKD--VYISGGKLI------SAEGSSWLRD 583
KQ+ S++LP Y P KD V + G+L+ SA G+S
Sbjct: 510 KQIISLILPATLNYRQIEKEKKTEKPLFSPLKDEGVMVDSGELMFGLLKKSAVGAS---- 565
Query: 584 YEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+G + ++ + L+F AQ V+ WL G ++ + D RK
Sbjct: 566 KQGIIHIIFNEKGPEAALNFFNGAQTVVNYWLLHNGFSIGIGDTI-----PDRKT----- 615
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
++ +D + Q+ V + + L +A ES + ++E + AAL+QA +A
Sbjct: 616 ---IQGIEDAVSEQKSAV-TEITRLATADQLESLPGMSIRE-TFESKVQAALNQARENAG 670
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+++L N+ + M +GSKG+ + + Q + +G Q A R P
Sbjct: 671 TKTQESLKDL--------NNGVQMALSGSKGSTINISQMTAIVGQQ---AVEGKRIPFGF 719
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 720 KYRTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 774
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G + RRL+ + D+ YDGTVRN+ G+ +VQF Y +G I QPV
Sbjct: 775 GYIQRRLVKALEDVMAKYDGTVRNSLGD-VVQFLYGEDGLDAV--HIESQPV 823
>gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit A' [Pyrococcus horikoshii OT3]
gi|3257973|dbj|BAA30656.1| 907aa long hypothetical DNA-directed RNA polymerase subunit A'
[Pyrococcus horikoshii OT3]
Length = 907
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/596 (27%), Positives = 276/596 (46%), Gaps = 92/596 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR + R V++ DP I + E+G+P Q+A L + E++ +N E+L + ++ G
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG 380
Query: 378 ELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV G RIR +++ +++G + R L DGDIVL NR PS+H S++A
Sbjct: 381 ANYVIDPEGR-RIRIMESNKENLAKMIDIGWTVERHLVDGDIVLFNRQPSLHRMSIMAHR 439
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 440 VRVMPYKTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGG 498
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQ 546
++ QD ++ +LL + + +++Q+ MF PD ++ K +WSGK
Sbjct: 499 PIIGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGVDIKELPEPDKYENGK-PLWSGKT 557
Query: 547 LFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKLI 573
+FS+LLP D E P + VYI GKL+
Sbjct: 558 IFSLLLPDDLTVWYRNKLCDEEEKCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLL 617
Query: 574 SA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T + D L
Sbjct: 618 SGAIDKKAYGRE-DGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLP 676
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYE 688
+ R + EI +REA++ + L+ A L G+ L + E
Sbjct: 677 EEARDR---IREI---IREAEE-----------RVQRLIEAYKRGELEPLPGKSLEETLE 719
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ A L++A +A ++A KY +N + M K G++G +L + Q + LG
Sbjct: 720 SKIMAVLAEARDNA--------GSVAEKYLGMNNHAVIMAKTGARGKILNITQMAALLGQ 771
Query: 749 QHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
Q +R + + GD AK + V NS+ +GL+P E F H++
Sbjct: 772 QSIRGRRLYRG---FKGRVLSHFKPGDLGARAKGF-----VVNSYKSGLSPQEYFFHAMG 823
Query: 809 SRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 824 GRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-VIVQFRYGEDGV 877
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S +E+ V + R+G+ +P C +CGAK
Sbjct: 7 VIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAK 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIK 107
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/592 (27%), Positives = 273/592 (46%), Gaps = 93/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N RL + +
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNG 411
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD +L NR PS+
Sbjct: 412 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSL 467
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 468 HKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 526
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 527 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILK-- 584
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
WSGKQ+ SM+LP P E P D V + GG+L+ S +
Sbjct: 585 PRPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTV 644
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y D + F AQ V+ WL G ++ + D +
Sbjct: 645 GASGGGIVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLET------- 697
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
+++ ++ ++ VDS ++A +E+T +L G ++ ++E + S AL+
Sbjct: 698 ------IQKIENAVRVRKEEVDS-----ITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
A +A A + KD N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 747 ARDEA---------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRI 797
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 798 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 843
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 844 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDG 894
Score = 47.4 bits (111), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 224/885 (25%), Positives = 380/885 (42%), Gaps = 135/885 (15%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
R+G C++C +D C GHFG I+ + H F+S I K+L +C C +R
Sbjct: 52 RMGTTERDYLCATCN-QDNYVCAGHFGHIELVKPMFHVGFISRIKKVLECVCFYCSKVRI 110
Query: 108 ERQKGAGSSRKEQP-----------RVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIV 155
+ K + + VC+ C R P + K ++
Sbjct: 111 NKNKTTITKESKHKLNFIWGICKNKMVCEDCNNRQPVIKKEGLSLFAYMKGEENNEGKVM 170
Query: 156 EIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFI 215
E++ KK+ ++ F+ F+ + +P +LS V+ V PSI E
Sbjct: 171 LNGERVYNIFKKINNEDLEFLGFNIKYS----RPEYMILSVLLVA--PPAVRPSIVMEGT 224
Query: 216 L-SKDAPFLKCFPVTPNNHRVT--EVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSH 272
L +D K + +N + E A +H + + H+ ++D E+S
Sbjct: 225 LRGEDDLTYKYSDIIKSNQNLKKYEEEGAPAHIIRDYEQLVQFHVATLIDN-----EISG 279
Query: 273 LVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTG 332
Q K + S+R E R + N+ +GKR D R V+T
Sbjct: 280 QPQALQKNGRPLKAISARLKGKEGRLRGNL---------------MGKRVDFSARSVITA 324
Query: 333 DPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRIR 391
DPNI L+E+G+P +VA ER+ S+N +L +S + G Y+ R+ G +
Sbjct: 325 DPNISLEELGVPMKVAMIHTFPERVTSFNLNKLRKLVSNGPNKYPGANYLIRRDG----Q 380
Query: 392 RID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINP 443
RID LE G ++ R + +GD+VL NR PS+H S++A VKV+ +N
Sbjct: 381 RIDLNFSRGDVILEEGYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVMD-GLTFRLNL 439
Query: 444 LCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAH 503
+P++ DFDGD ++ ++PQ+ ++ EL+EL+ + K +I+ QS + ++ + QD+L
Sbjct: 440 SATAPYNADFDGDEMNLHMPQSYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVC 499
Query: 504 LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK------ISKDSV-WSGKQLFSMLLPP-D 555
L V + + FC + S + + I++ + ++GKQLFS+ LP +
Sbjct: 500 RLTSKGVFIKR------EEFCNLVYASNLVARANIKPAIARPKILYTGKQLFSLTLPKLN 553
Query: 556 FEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEW 614
F F K V + G L + +G+L + Y +++ F+ + Q+++ +
Sbjct: 554 F---FRDKVVIMDGVLLNGVICKKSVGTAQGSLIHIIANDYGHEEITRFIDSLQKLISTY 610
Query: 615 LS-VRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKD 673
L+ + +V + D + S M I + +A+ +QL+ DS +
Sbjct: 611 LTLISTFSVGIGD------TISSPETMAHISRAIGDAK--AEVKQLIYDS--------RR 654
Query: 674 SESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAG 731
S L G +L + E + + AL++A + + +L N L M KAG
Sbjct: 655 RGSLEKLPGMNLQETLESKINLALNKARDISGTRAVESLNHL--------NGLKQMLKAG 706
Query: 732 SKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIP 785
SKG+ + + Q + C+G Q+ P FR PH + Y P
Sbjct: 707 SKGSYINISQITSCVGQQNIESKRIPFGFRQRTLPHFVK----------------NDYGP 750
Query: 786 SA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDG 841
+ V NS+L+GLNP E F H++ R+ G + RR++ M D YDG
Sbjct: 751 ESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAETGYIQRRIVKAMEDARIEYDG 810
Query: 842 TVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGS------LSACA 880
+VR + + + QF Y + + E PV S LS C+
Sbjct: 811 SVRGS--STVYQFMYGEDNFDSTYLETQAFPVESRCSEIKLSVCS 853
>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
Length = 872
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/570 (27%), Positives = 262/570 (45%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A+ L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDNG----DRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAIMKPKPLWTG 387
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL S+ +P KD + + G + + G L ++
Sbjct: 388 KQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGNVMFGVVDKKTVGSGGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ K+ L+ Q+V+ WL G ++ + D +A S M EI + + A++
Sbjct: 448 REKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDA-IADAST-----MKEITHAISSAKE 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q+++ + N L K + R S+E + S L+ A A + ++++
Sbjct: 502 QV--QEIIYKAQHNEL-ELKPGMTLRE------SFEGEVSRTLNDARDSAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M AGSKG+ + + Q S C+G Q R + +
Sbjct: 553 L--------NNVKQMVSAGSKGSFINIAQMSACVGQQMVEGK---RIAFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDFSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFLYGEDG 685
>gi|242060025|ref|XP_002459158.1| hypothetical protein SORBIDRAFT_03g046922 [Sorghum bicolor]
gi|241931133|gb|EES04278.1| hypothetical protein SORBIDRAFT_03g046922 [Sorghum bicolor]
Length = 1571
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 147/550 (26%), Positives = 252/550 (45%), Gaps = 53/550 (9%)
Query: 2 DNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVM-------EIGAVSEVT-NPRLGLP- 52
D++ GL VP + + L ++++ E S + I S++ NP LGLP
Sbjct: 3 DDDPAAAGLTVPEAFIRRVKLSVTSNQEIVSTSPLFPSQDPIPITHCSQLQDNPSLGLPL 62
Query: 53 NPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKG 112
+ C SCGA C+GHFGFIK P I HP ++++ K+LN +C +C ++K ++
Sbjct: 63 QDGSTCESCGATQLDKCDGHFGFIKLPEPIYHPSHIAELGKILNLVCLRCLRLKKPKKVT 122
Query: 113 AGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY 172
SR C YC +++ ++ L K + E+ D +
Sbjct: 123 GKESRFTS---CSYCQELSPLCVSQVKKSNGARSLELKLPLKQEV-----------ADGF 168
Query: 173 WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILS----KDAPFLKCFPV 228
W F+ D S +R+ L K+V ++K + R +D + +
Sbjct: 169 WSFL--DQFGFHTSGTSHRRPLHPKEVQDIMKKITEKTRARLAARGYNLQDGFVMDNMSI 226
Query: 229 TPN----NHRVTEVPHAFSHEKKLFFDNWTRHLKKM--VDYRGRDIELSHLVQDCLKISK 282
PN ++ + E K R ++++ ++ +IE L D L+++
Sbjct: 227 PPNCLQISNMLDENTEMCPPTSKGLLHKVLRTIEQIESLNISHPNIEARELGADDLQVAV 286
Query: 283 LHLDKSSRKDSAEVRQKKNIDISNSSGLRW---IKDVVLGKRNDDCFRMVVTGDPNIKLK 339
D + +A+V Q + +W +K + L K + R V+TGDP I L
Sbjct: 287 A--DYMNMGGAAKVSQHVTF-TRQPAPKQWHKKMKTLFLSKSSSYTCRAVITGDPYIGLD 343
Query: 340 EIGIPCQVAERLQISERLNSWNWERL------SVCISFRLLEKGELYVCRKGGLVRIRRI 393
+G+P ++A R+ + E + ++N RL +C+++ L + K G ++
Sbjct: 344 VVGVPDEIARRMSVQECVTNYNIARLQDMMNKGLCLTYTDLNTNTYDLDGKKG---NKKC 400
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
L +G+ + R + DGD+V +N+PPS HS+ AL V V + INPL C P DF
Sbjct: 401 IMLRVGETVDRRVLDGDLVFLNKPPSTDMHSIQALYVHVHD-DHTIKINPLICGPLEADF 459
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGDC+H + P+++ ARVE EL A++KQL+N + + + D L A ++ + S S
Sbjct: 460 DGDCVHIFFPRSVLARVEAAELFAVEKQLLNSHNAKLNFQIKNDYLLALRIMCDRS--YS 517
Query: 514 HLQMQQLQMF 523
+ Q+ MF
Sbjct: 518 KEKANQIAMF 527
Score = 169 bits (429), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 182/671 (27%), Positives = 297/671 (44%), Gaps = 66/671 (9%)
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
G REA N Q ++ M L+ S S + L G+ + +S +L +D F
Sbjct: 582 GPREAIKLINLLQPLL---MESLLMDGFSISLKDLDGQSAMQKANQSISLE---IDKFSK 635
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
D + + ++L + + L+ LV+ LG Q L + + L
Sbjct: 636 SIVD-------FIANSSALGLLVDPKNDSALMNLVEQVGFLGYQ--LQSTDRLYSNNLVE 686
Query: 766 AAWNRL--RAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS---SFSDNADL 820
+N L R+G +T+C V +SF GLNP E +HS++ R+ S S
Sbjct: 687 DCYNFLEKRSG-STKCYDPPKGHDFVTSSFYNGLNPYEELLHSISVREKIERSSSKGLAE 745
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF-SYNIEGTSTPTGEIGDQPVGSLSAC 879
G L + +M +RD+ YDGT+R +Y N IVQF S N+ + TP GD +G L+A
Sbjct: 746 AGNLFKNMMAMLRDVTVCYDGTMRTSYNNSIVQFDSTNVSSSLTP----GDS-IGILAAT 800
Query: 880 AISEAAYSALDQPISLLETSPLLNLKNVL--ECGSKKSNADQTMSLFLSNKLGKRRHGFE 937
+ AAY A+ P TS ++K VL SK DQ L+L+ + E
Sbjct: 801 VFANAAYKAVLVPNQKNMTS-WDSMKEVLLTNACSKTGTIDQKAILYLNKCFCGLKFCSE 859
Query: 938 YGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSI 997
A V++ L+ + L I Y Q + + + H H+ KE + + +I
Sbjct: 860 LAAHRVQSCLKRIKLEYCAIEVSIKY--QQEATQAAQCLVGHIHLDKEQLNWMEITMGNI 917
Query: 998 IDS----LYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENF---K 1050
+ + + + R ++I +IS++ C ++ D + V ++ F
Sbjct: 918 LQTCQKNVNKHVMKNRQLMQILKTTEIISSEYCLC---GQDIGDERALQVSCLQCFIHAS 974
Query: 1051 RTSIDLET--IQMW---VMPFLLKTVVKGFREIKKVDILW---KDKQKASKSHDDSFGEL 1102
T++ E+ IQM + P LL TV+KG ++++ ++W K + S + GEL
Sbjct: 975 TTTVQPESNVIQMMTNTIFPILLDTVIKGDPQVQEAKLIWVEPKLTRWVKNSSAEQKGEL 1034
Query: 1103 YLRVSMS--GQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGI----DAGLQ 1156
+ +++ W +M+ C +MD+ID TRS P NI+ +GI D +Q
Sbjct: 1035 AVEITVEKIAAAENGGTWGVVMDACVPVMDLIDTTRSAPCNIQEVQKVFGISSVFDRVVQ 1094
Query: 1157 F---------FLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSS 1207
F F +L A+ K++L EHL+ VA++++ TG G N G +
Sbjct: 1095 FLMFCPPLGSFFQHLSKAVGMVTKSVLMEHLITVASSMTCTGSLHGFNRSGSKATFQSLK 1154
Query: 1208 VSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRT 1267
V +PF +A S P F K+A+ D L V WG ++GTG F I ++ E ++
Sbjct: 1155 VQAPFTEATLSRPMQCFRKSAEKVDSDQLDSVVSTCSWGNHAAIGTGSAFKIHWNDENQS 1214
Query: 1268 LSKPV-DVYNL 1277
S + YNL
Sbjct: 1215 ASNEILREYNL 1225
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 1334 YNDVLRLSNALKKILHKYSIGQRLSEKDKTTVI-RALYFHPRRNEKLGIEPPDIEVTYHP 1392
Y V + +K+I+ + G +LS+ D+ ++ + L +HP + +K+ + I V H
Sbjct: 1465 YTQVEPIIKNVKRIIRESRDGMKLSQDDEMFIMNKILMYHPEKEKKMAGQGNYIMVNKHQ 1524
Query: 1393 EHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437
+SRC + DGS DFSY KC+ + I P AE + K+
Sbjct: 1525 TFPSSRCLYVASSDGSSSDFSYKKCLENFIRIHYPHAAESFCRKY 1569
>gi|256083198|ref|XP_002577836.1| RNA polymerase Rpb1 [Schistosoma mansoni]
gi|360044779|emb|CCD82327.1| putative rna polymerase Rpb1 [Schistosoma mansoni]
Length = 1342
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 174/614 (28%), Positives = 278/614 (45%), Gaps = 91/614 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
+LGKR + R V++ DPN+++ E+ IP A+ L ER+ +N L S+ ++
Sbjct: 351 LLGKRTNFTARTVISPDPNMRIDEVCIPVHCAKLLTYPERVTDFNLNFLRSLVLNGPNNY 410
Query: 376 KGELYVCRKGGLVRIRRIDA-----------------------LELGDIIYRPLTDGDIV 412
G ++V K R R+ +A L+ GDI+ R L D DIV
Sbjct: 411 PGAMFVSYKLRGERKRQAEASGNSDVVKRFLASERAREDVAKYLQSGDIVERHLLDDDIV 470
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVEL 472
L NR PS+H S+ A V P + NP CC+PF+ DFDGD ++ ++PQ AR E
Sbjct: 471 LFNRQPSLHRVSIQAFRAVVKPFRTF-RFNPCCCTPFNADFDGDEMNIHLPQTEAARAEA 529
Query: 473 TELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL--QMFCPH---R 527
L+ K +++ ++G L+S QD +TA HLL V L+ Q L Q+ + R
Sbjct: 530 KHLMLSLKNIVSPKNGEPLISPIQDLITATHLLTLKDVFLNRDQACTLAAQLLAGNHLGR 589
Query: 528 FLS-PDIFKISKDSVWSGKQLFSMLLPP------DFEYTFPSKDVYISGGK-LISAEGSS 579
LS P + ++W+GKQ+F ++L P P+K +Y S G+ + +G
Sbjct: 590 LLSLPKPAILWPVALWTGKQIFGLILSPHPSTGIKVNLRVPTKSMYSSKGQEMCPNDGFV 649
Query: 580 WLRDYE----------------GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTV 622
+++ E ++F L++ Y R+ D ++ + +L+ RG ++
Sbjct: 650 LIQNSELLAGCVDKKLLGGGSKSSIFYTLLRDYGREACADAMWRLGRIALFFLAHRGFSI 709
Query: 623 SLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQG 682
L ++ +S + K + I G D N Q MN L+ +L+
Sbjct: 710 GLGEVMPSSDLVASKTAL--ISRGFATCDDYINQYQ------MNTLVCNPGCSMEDTLES 761
Query: 683 EHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQH 742
++S E + + A+ H NS L M ++GSKG+ L + Q
Sbjct: 762 -NISQELSKIRDEAGAACKRQLH--------------PSNSPLVMAQSGSKGSFLNISQM 806
Query: 743 SLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLEC 802
C+G Q R P ++ + G T AK + V NSF +GL+P E
Sbjct: 807 IACVGQQ---VIGGKRVPDVINGRSLVHFPPGSRTPEAKGF-----VGNSFYSGLSPSEF 858
Query: 803 FIHSVTSRDS---SFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE 859
F H+++ R+ + AD G + RRL+ F+ DL AYD TVR++ G+ I+QF Y +
Sbjct: 859 FFHAMSGREGLTDTAVKTADT-GYMQRRLVKFLEDLAVAYDDTVRDSRGD-IIQFRYGSD 916
Query: 860 GTSTPTGEIGDQPV 873
G E PV
Sbjct: 917 GLDPLEMETDTFPV 930
Score = 47.8 bits (112), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG C++CG D + C GH+G+ P I H + I K+L +IC C +
Sbjct: 57 DPRLGANKRDELCATCGL-DYQTCIGHWGYFDLPTPIYHVGYTWHIVKILQTICKTCSRV 115
Query: 106 RKERQKGA 113
Q+ A
Sbjct: 116 LLPEQQRA 123
>gi|350402598|ref|XP_003486538.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Bombus
impatiens]
Length = 1385
Score = 185 bits (470), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 252/1017 (24%), Positives = 414/1017 (40%), Gaps = 170/1017 (16%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + ++G N T C SCG K C GHFG+I + H + I +L +IC C
Sbjct: 55 VLDRKMGTCNNTTNCISCG-KSLNECIGHFGYIDLELPVFHVGYFRSIIGILQTICKNCS 113
Query: 104 TIR-KERQKGAGSSRKEQPR---------------------VCKYCVRNPAQWYPRMRFK 141
+ E K +R P VC++C K
Sbjct: 114 HVMLSEADKKHYLARVLNPNLGYLTRKALRKQILDKAKKTTVCQHCRDLNGTVKKAGLLK 173
Query: 142 LSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSY 201
+ + GK I + +KL++ N L D+ + + + VL+ +V
Sbjct: 174 IVHEKYKGKKKIDAIVQQKLAEYNNVLEDNKA----LEGVLQTGLIS----VLNPLEVQS 225
Query: 202 LLKDVDPS------IREEFILSKDAPFLKCFPVTPNNHRVTEVP---------HAFSHEK 246
+L+ + S + E+ L KD L PV P R + V H
Sbjct: 226 ILEKIPESDIPLLLMNSEYALPKDL-ILTRIPVPPICIRPSVVSDLKAGTTEDHLTMKLS 284
Query: 247 KLFF--DNWTRHLKKMVDYRGRDIELSHLVQDCL-----KISKLHLDKSSRKDSAEVRQK 299
++ F D +H + + + + L C ++S + L+ +K + Q+
Sbjct: 285 EIVFINDVIQKHRQSGAKVQMYNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQR 344
Query: 300 KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNS 359
+ G + + GKR D R V++ DPN++++++G+P VA+ L ER+N
Sbjct: 345 ----LKGKQG--RFRGNLSGKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNP 398
Query: 360 WNWERLSVCI--------SFRLLEKGELYV---CRKGGLVRIRRIDALELGDIIYRPLTD 408
N E + + +++G+ + G +I + L+ GDI+ R L D
Sbjct: 399 SNIELMRKLVRNGPDIHPGANFIQQGKTQFKKFLKYGNRQKIAQ--DLQYGDIVERHLRD 456
Query: 409 GDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGA 468
D+VL NR PS+H S++A KVL N C+P++ DFDGD ++ ++PQ A
Sbjct: 457 DDVVLFNRQPSLHKLSIMAHKAKVLD-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515
Query: 469 RVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ---MFCP 525
R E L+ L+ ++G L++ QD +T +LL + + L+ Q QL + P
Sbjct: 516 RAEALILMGNKSNLVTPRNGELLIAATQDFITGGYLLTQKDMFLNKAQASQLAGCLLAGP 575
Query: 526 HRFLS-----PDIFKISKDSVWSGKQLFSMLLPP----DFEYTFPSKD-VYISGGKLISA 575
+S P I K S +W+GKQ+FS++L P + + +K Y S +L
Sbjct: 576 DIAMSITLPEPAILKPS--MLWTGKQIFSLILKPNSTCNIKANLKTKGRAYTSNQELCIN 633
Query: 576 EGSSWLRDYE----------------GNLFQYLIKRYRDKVLDF-LYAAQEVLCEWLSVR 618
+ +R+ E N+F L++ + + + ++ + +L R
Sbjct: 634 DSYVIIRNSELLAGTMDKSTLGSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNR 693
Query: 619 GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
G ++ + D+ GL +A+ ++L+ + + E R
Sbjct: 694 GFSIGIGDVTPGQ--------------GLLKAK-----EKLLNAGYSKCTEYIRQMEEGR 734
Query: 679 SLQGEHLSYEKQRSAA-LSQASVDAFKHVFWDIQNLAYKYGSKD----NSLLAMFKAGSK 733
+ S E+ A L + SV I++ A K K+ NS L M +GSK
Sbjct: 735 LVCQPGCSEEETLEAMILKELSV---------IRDHAGKACLKELHPSNSPLIMALSGSK 785
Query: 734 GNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSF 793
G+ + + Q C+G Q A R P+ A AK + VENSF
Sbjct: 786 GSFINISQMIACVGQQ---AISGHRVPNGFEDRALPHFERHSKIPAAKGF-----VENSF 837
Query: 794 LTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQI 851
+GL P E F H++ R+ G + RRL+ + DLC YD TVRN+ G+ I
Sbjct: 838 YSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGD-I 896
Query: 852 VQFSYNIEGTSTPTGEIGDQPVG---------SLSACAISEAAYSALDQPISLLETSPLL 902
VQ Y +G E D PV + S+C E LD P + T+ L+
Sbjct: 897 VQILYGGDGLDPTYMEGKDCPVDYKRVLDHVTAKSSCKNEE----PLDGPDLIKATNELV 952
Query: 903 NLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGA---LEVKNHLECLMLSDIV 956
K+ EC S++ Q +S FL K H Y A + V LE + +S +V
Sbjct: 953 GSKDC-ECLSEEFK--QELSTFLKGVARKIIH-LRYNAPSNIPVIFQLERITVSQLV 1005
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
frontalis]
Length = 1004
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/587 (25%), Positives = 265/587 (45%), Gaps = 86/587 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+TGDPNI + ++G+P +A L E + +N + L ++
Sbjct: 256 IRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNNG 315
Query: 373 LLEK-GELYVCRKGGLVRIRRIDA---------LELGDIIYRPLTDGDIVLINRPPSIHP 422
E G YV + G RID L++G + R + DGD+V+ NR PS+H
Sbjct: 316 PNEHPGAKYVFKDNG----DRIDLKFARSGSVHLQVGYKVERHINDGDLVIFNRQPSLHK 371
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +KV+P S+ +N SP++ DFDGD ++ ++PQ+ + E+ E+ + KQ+
Sbjct: 372 MSMMGHKIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQI 430
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSV 541
++ Q+ + ++ + QD+L + L+ + + M+ P + P + +
Sbjct: 431 VSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKPIPL 490
Query: 542 WSGKQLFSMLLP-----------PDFEYTFPS---KDVYISGGKLISA------EGSSWL 581
W+GKQ+ S+++P PD E T S V I G+L++ GSS
Sbjct: 491 WTGKQIMSLIIPKINIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSS-- 548
Query: 582 RDYEGNLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + ++ Y + F Q V+ WL G ++ + D + + + M
Sbjct: 549 ---QNGIIHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGFSIGIGD------TIADRNTM 599
Query: 641 DEIFYGLREAQDTCN-----FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAAL 695
+ I + A+ N QQ ++ + E+ SL HL+ + + A
Sbjct: 600 ETINKAIASAKQAVNEVILQAQQCKLECQPGLTI----RETFESLVNRHLNKARDSAGAS 655
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPL 755
+Q S+ + N++ M +GSKG+ + + Q + C+G Q+
Sbjct: 656 AQKSLREY------------------NNVKQMVVSGSKGSFINISQMTACVGQQNVEGK- 696
Query: 756 SFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
R P D + ++ + VENS+L GL P E F H++ R+
Sbjct: 697 --RIPFGFKYRTLPHFTKDDQSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLID 749
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN++G+ I+QF Y +G
Sbjct: 750 TAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGH-IIQFCYGEDG 795
>gi|123979322|gb|ABM81486.1| RNA polymerase II largest subunit [Myelochroa aurulenta]
Length = 984
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/577 (26%), Positives = 271/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 257 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 316
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+ S+
Sbjct: 317 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLALESM 372
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 373 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 431
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L Q+ + ++ P + P + ++W+G
Sbjct: 432 QRNGPLMGIVQDTLCGIYKMCRRDVFLIKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 491
Query: 545 KQLFSMLLPPDF------EYTF-PSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P E F P D + ISGG+L+ + G +++
Sbjct: 492 KQILSLVIPTGLNLLRGTEEGFSPLNDDGLLISGGELMYGLLNKKTVGASGGGVIHIVFN 551
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D H+ +++ ++
Sbjct: 552 EKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIENA 598
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V M SA ++E SL G ++ ++E + S AL++A DA ++
Sbjct: 599 VNNQKAEV---MEITRSATENE-LESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 654
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 655 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 702
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 703 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 752
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 753 IQRRLVKALEDVMAKYDGTVRNSLGD-VVQFVYGEDG 788
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/592 (27%), Positives = 273/592 (46%), Gaps = 93/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N RL + +
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNG 411
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD +L NR PS+
Sbjct: 412 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSL 467
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 468 HKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 526
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 527 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILK-- 584
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
WSGKQ+ SM+LP P E P D V + GG+L+ S +
Sbjct: 585 PRPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTV 644
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y D + F AQ V+ WL G ++ + D +
Sbjct: 645 GASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLET------- 697
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
+++ ++ ++ VDS ++A +E+T +L G ++ ++E + S AL+
Sbjct: 698 ------IQKIENAVRVRKEEVDS-----ITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
A +A A + KD N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 747 ARDEA---------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRI 797
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 798 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 843
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 844 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDG 894
Score = 47.4 bits (111), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 219/925 (23%), Positives = 388/925 (41%), Gaps = 155/925 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE----------VTNPRLGLPNPTNECSSCGAKDR 66
+ + G+ + E K+SV EI +++PR+G + C + G +
Sbjct: 17 VKAVQFGVLSPDEIRKMSVCEIETAETYEKGRPKRGGLSDPRMGTMDRAMACETDGM-NS 75
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSI---CPKCKTIRKERQKGAGSSR----KE 119
G+FG ++ + H F+ ++ +L + K + E K A R K+
Sbjct: 76 TDTPGYFGHLELAKPVFHYGFIKNVVSVLRCVGFSSSKLMIDKNEDPKFAQIMRIKNNKQ 135
Query: 120 QPR----VCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGF 175
+ R CK PA P+ +++L K++ + KKL +D +
Sbjct: 136 RLRKFTDACKTKTICPATGTPQPQYRLEGM--------------KITAEFKKLEED--DY 179
Query: 176 IPFDAQQEENSVKPNRKVLSCKQVS-----YLLKDVDPSIREEFILSKDAPFLKCFPVTP 230
+P D + + + P R + K +S L D + + F+L + PV P
Sbjct: 180 LP-DGGERKQVITPERALNILKNISDEDCRILGFDPEHAHPSWFVL-------QALPVPP 231
Query: 231 NNHRVTEVPHAFSHEKKLFFDNWTR-------------HLKKMVDYRGRDIELSHLVQDC 277
+ R + + FD+ TR K + + ++ H+VQ+
Sbjct: 232 HPVRPS-----------VAFDSSTRSEDDLTVKLMEIVRTNKNLQRQEQNGAPQHVVQEF 280
Query: 278 LKISKLH----LDKS----SRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMV 329
++ + H +D + R + R K+I I+ ++GKR D R V
Sbjct: 281 TELLQYHIMTFMDNTVAGQPRALTRSGRPIKSISERLKGKAGRIRGNLMGKRVDFSARTV 340
Query: 330 VTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISF----RLLEKGELYVCRKG 385
+T DPN+ L E+G+P +A + E + +N ERL + E G Y+ R+
Sbjct: 341 ITPDPNLMLDELGVPWSIALNMTYPETVTPYNIERLRKLVENGPHPPPGETGAKYIIRED 400
Query: 386 GLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G +R+D LE G + R + +GD VL NR PS+H S++ V+++P
Sbjct: 401 G----QRLDLRFMKRESDKRLEYGYKVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMPY 456
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N P++ DFDGD ++ ++PQ++ R E+ EL+ + K +++ Q+ + ++++
Sbjct: 457 STF-RMNISVTPPYNADFDGDEMNMHLPQSMETRAEVQELMMVPKMIVSPQANKPVMAIV 515
Query: 496 QDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLP- 553
QD+L A L+ + D+ + + M L P I + +W+GKQ+FSM P
Sbjct: 516 QDTLLACRLITKRDTFITKDVFMNILMWHTNWDGKVPKPAIIKPEPLWTGKQVFSMFTPD 575
Query: 554 -------------PDFEYTFPSKDVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDK 599
D +++ V + G+LI+ + G L + + +
Sbjct: 576 VNVIRTSAWARDADDMDFSVDDVGVRVERGELITGIMCKKSMGSGGGGLIHTIWEEWGPT 635
Query: 600 VL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
DF+ Q +L WL G T+ +SD + + + D I + ++ Q
Sbjct: 636 AARDFVSQVQWLLNYWLLHYGFTIGISDTIADDRTM--QTINDTITKAKSDVKEVVAIYQ 693
Query: 659 LMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYG 718
+ M M+A+ S+E++ + L++A +A N A
Sbjct: 694 -RGELEMQPGMTAQQ------------SFEQKVNQILNKARDNA--------GNSAQTSL 732
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTE 778
N++ AGSKG+ L + Q C+G Q+ R P + + D
Sbjct: 733 DDTNNVKMTVTAGSKGSFLNISQMIACVGQQNVEGK---RIPFGFTDRSLPHFAKNDLGP 789
Query: 779 CAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDL 835
A+ + VENS+L GL P E F H++ R+ D A G + RRL+ M D+
Sbjct: 790 EARGF-----VENSYLRGLTPQEFFFHAMGGRE-GLIDTAVKTSETGYIQRRLVKAMEDI 843
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEG 860
YDGTVRN+ G+ ++QF Y +G
Sbjct: 844 IVKYDGTVRNSAGD-VIQFLYGEDG 867
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 152/570 (26%), Positives = 268/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 340 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEH 399
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 400 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 455
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 456 MAHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSP 514
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P + +W+G
Sbjct: 515 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKPLWTG 574
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL S+ +P KD + + G + + G L ++
Sbjct: 575 KQLLSLAIPKGIHLQRFDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 634
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ KV L+++ Q+V+ WL G ++ + D + + M ++ ++EA+
Sbjct: 635 REKGPKVCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQT------MRDVTKTIQEAKQ 688
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + +++
Sbjct: 689 --KVQEIIIDAQHNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKD 739
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 740 L--------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFGDRSLPHFT 788
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 789 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 843
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 844 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 872
Score = 45.8 bits (107), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + C +CG +D C GHFG I+ + H F++ I K S+C C
Sbjct: 54 LNDPRLGSIDRNFRCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/590 (26%), Positives = 274/590 (46%), Gaps = 89/590 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD++L NR PS+
Sbjct: 413 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 469 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 528 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILK-- 585
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
W+GKQ+ SM+LP P E P D + + GG+L+ S +
Sbjct: 586 PRPRWTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTV 645
Query: 582 RDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y +V ++F AQ V+ WL G ++ + D + + +KI
Sbjct: 646 GATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDT-IPDLATIQKI-- 702
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VDS +SA ++ + L G + ++E + S AL+ A
Sbjct: 703 ----------EEAVRIRKEEVDS---ITLSATEN-TLEPLPGMSVRETFESKVSRALNNA 748
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PL 755
+A +++L N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 749 RDEAGTETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRIPF 800
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 801 GFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREG 846
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 847 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGEDG 895
Score = 47.4 bits (111), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 155/586 (26%), Positives = 266/586 (45%), Gaps = 82/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L ++
Sbjct: 351 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANG 410
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L RR +L G + R L DGDI+L NR PS+H S+
Sbjct: 411 PNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESM 470
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L + +++
Sbjct: 471 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALVPLNIVSP 529
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + ++ P P I K W
Sbjct: 530 QRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPPPAILK--PRPRW 587
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I GG+L+ S + G
Sbjct: 588 TGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVGASGG 647
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y D + F AQ ++ WL G ++ + D + I + I
Sbjct: 648 GVIHTIFNEYGPDTAVAFFNGAQTIVNYWLLHNGFSIGIGD------TIPDAITIQRIEN 701
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQASVDA 702
+RE + ++A +E+T L G ++ ++E + S AL+ A +A
Sbjct: 702 CVRERKKEVE------------AITASATENTLEPLPGMNVRETFESKVSRALNNARDEA 749
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 750 GSETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKY 801
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 802 RTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDT 847
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 848 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYGEDG 892
Score = 48.9 bits (115), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ + KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCG 113
Query: 104 TIRKE 108
I+ +
Sbjct: 114 KIKAD 118
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides
immitis RS]
Length = 1750
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/590 (26%), Positives = 274/590 (46%), Gaps = 89/590 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD++L NR PS+
Sbjct: 413 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 469 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 528 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILK-- 585
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
W+GKQ+ SM+LP P E P D + + GG+L+ S +
Sbjct: 586 PRPRWTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTV 645
Query: 582 RDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y +V ++F AQ V+ WL G ++ + D + + +KI
Sbjct: 646 GATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDT-IPDLATIQKI-- 702
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VDS +SA ++ + L G + ++E + S AL+ A
Sbjct: 703 ----------EEAVRIRKEEVDS---ITLSATEN-TLEPLPGMSVRETFESKVSRALNNA 748
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PL 755
+A +++L N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 749 RDEAGTETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRIPF 800
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 801 GFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREG 846
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 847 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGEDG 895
Score = 47.4 bits (111), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
Length = 868
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 155/578 (26%), Positives = 268/578 (46%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L G + R + DGD+V+ NR PS+H S+
Sbjct: 213 PGAKYIIRDTG----ERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ E+ + KQ+++
Sbjct: 269 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP--HRFLSPDIFKISKDSVWS 543
QS + ++ + QD+L L+ + + ++ P L P + + +W+
Sbjct: 328 QSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVI-LKPKVLWT 386
Query: 544 GKQLFSMLLPPDFE---------YTFPSKD-VYISGGKLI-SAEGSSWLRDYEGNLFQYL 592
GKQ+ S+++P + P+ + I G++I + +G L +
Sbjct: 387 GKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTI 446
Query: 593 IKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
K ++ F Q V+ WL G ++ + D + + M E+ ++EA+
Sbjct: 447 WKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADT------MKEVTRTVKEAR 500
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + D+ N L E +L+ S+E + S L+QA +A +
Sbjct: 501 RQV--AECIQDAQHNRL----KPEPGMTLRE---SFEAKVSRILNQARDNAGR------- 544
Query: 712 NLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
+ ++ KD N++ M AGSKG+ + + Q S C+G Q P F++ PH
Sbjct: 545 --SAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPH--- 599
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D++ ++ +I ENS+L GL P E F H++ R+ G
Sbjct: 600 ------FPKDDDSPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M D+ YDGTVRNA G+ I+QF+Y +G
Sbjct: 649 YIQRRLVKAMEDVMVRYDGTVRNAMGD-IIQFAYGEDG 685
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 161/615 (26%), Positives = 272/615 (44%), Gaps = 102/615 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +++
Sbjct: 342 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKM-----ME 396
Query: 373 LLEKGE------LYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINR 416
L+++G Y+ R G RID L+ G + R + DGD+V+ NR
Sbjct: 397 LVQRGNSQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNR 452
Query: 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELV 476
P++H S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ +
Sbjct: 453 QPTLHKMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIH 511
Query: 477 ALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDI 533
+Q+I Q+ + ++ + QD+LTA + + V + Q+ + MF P + P I
Sbjct: 512 ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQIMNILMFLPIWDGKMPQPAI 571
Query: 534 FKISKDSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--- 578
K +W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 572 LK--PKPLWTGKQIFSLIIPGNVNLIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIM 629
Query: 579 -----SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASH 632
L G+L +V Y Q V+ WL + G ++ + D
Sbjct: 630 GILCKKTLGASAGSLLHVCFLELGHEVCGLFYGNIQTVINNWLLLEGHSIGIGDTIADPQ 689
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
+ EI +++A++ + +++ +H N + + R ++E Q +
Sbjct: 690 TYL------EIQNSIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVN 734
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH-- 750
L+ A A K ++ N+L AM AGSKG+ + + Q C+G Q+
Sbjct: 735 RILNDARDKT--------GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 786
Query: 751 -SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFI 804
P FR PH + Y P + VENS+L GL P E +
Sbjct: 787 GKRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYF 830
Query: 805 HSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
H++ R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 831 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLC 889
Query: 863 TPTGEIGDQPVGSLS 877
E P LS
Sbjct: 890 GEMVEFQTMPTIKLS 904
Score = 42.4 bits (98), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 22/138 (15%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNEC 58
+ P + + GI + E ++SV + G + + +PR G+ + + C
Sbjct: 7 KAPLRFVKKVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRC 66
Query: 59 SSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---------PKCKTIRKER 109
+C A + C GHFG I + H F++ K+L +C P I++
Sbjct: 67 QTC-AGNMSECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPTNPKIKEIV 125
Query: 110 QKGAGSSRKEQPRVCKYC 127
K G RK V C
Sbjct: 126 MKSKGQPRKRLAFVYDLC 143
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/585 (26%), Positives = 263/585 (44%), Gaps = 79/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L +
Sbjct: 350 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNG 409
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R +L G + R L DGD++L NR PS+H S+
Sbjct: 410 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ +R EL +L + + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVPQNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + M+ P P IFK W
Sbjct: 529 QRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMMWVPDWDGVIPPPAIFK--PRPRW 586
Query: 543 SGKQLFSMLLP-------PDFEYTFPSKDVY--ISGGKLISAEGS--------SWLRDYE 585
+GKQ+ SM+ P D + PS + Y + G ++ EG +
Sbjct: 587 TGKQMISMVFPSGLNLMRTDSKGAAPSSEKYSPLQDGNVLIHEGQLMYGMLNKKIVGASG 646
Query: 586 GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSD------LYLASHSCSRKI 638
G + + Y D + F AQ ++ WL G ++ + D A C RK
Sbjct: 647 GGVIHIIFNEYGADAAVAFFNGAQAIVNYWLLHNGFSIGIGDTIPNDQTIQAIEECVRKR 706
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
++ + E T +L MN ++E + S AL+ A
Sbjct: 707 KLE-----VEEITATATQNKLEPLPGMNV----------------RETFESKVSVALNTA 745
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSF 757
+A +++L N+ + M ++GSKG+++ + Q + +G Q ++F
Sbjct: 746 RDEAGTATEKSLKDL--------NNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAF 797
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
F + D + ++ + VENS+L GL P E F H++ R+
Sbjct: 798 GFKYR----TLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 848
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 849 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 892
Score = 49.3 bits (116), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIR 106
I+
Sbjct: 114 KIK 116
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/586 (26%), Positives = 268/586 (45%), Gaps = 82/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L ++
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANG 412
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L RR +L G + R L DGD++L NR PS+H S+
Sbjct: 413 PNEHPGARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESM 472
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL++L + +++
Sbjct: 473 MAHRVRVMPYSTF-RMNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 531
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + + L+ Q+ + ++ P P I K W
Sbjct: 532 QRNGPLMGIVQDTLCGIYKICRRDIFLTKEQVMNIMLWVPDWDGVIPPPAILK--PRPRW 589
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD V I GG+L+ S + G
Sbjct: 590 TGKQMISMALPSGLNLLRVEKDNSSLAEKFSPLTDGGVLIHGGQLMYGMLSKKTVGASGG 649
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y + + F AQ ++ WL G ++ + D + + + I
Sbjct: 650 GVIHTIFNEYGPETAVAFFNGAQTIVNYWLLHNGFSIGIGD------TIPDAVTIQRIEN 703
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQASVDA 702
+RE + ++A +E+T L G ++ ++E + S AL+ A +A
Sbjct: 704 CVRERKQEVE------------AITASATENTLEPLPGMNVRETFESKVSRALNNARDEA 751
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 752 GSETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKY 803
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 804 RTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDT 849
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 850 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYGEDG 894
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ + KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCG 113
Query: 104 TIRKE 108
I+ +
Sbjct: 114 KIKAD 118
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 214/953 (22%), Positives = 386/953 (40%), Gaps = 180/953 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL---SKSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDI----------IYRPLTDGDIVLINRPPSIHPHS 424
G RID L+ G + R + DGDIV+ NR P++H S
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKAPSQSAWIIGVERHMCDGDIVIFNRQPTLHKMS 478
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++
Sbjct: 479 MMGHRVRILPWST-FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVT 537
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSV 541
QS R ++ + QD+LTA + V L ++ L MF + P I K +
Sbjct: 538 PQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPL 595
Query: 542 WSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWL 581
W+GKQ+FS+++P PD E + P K + K++ G L
Sbjct: 596 WTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSL 655
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + Y+ Q V+ WL + G T+ + D S +
Sbjct: 656 GTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTY 709
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQ 697
+I +++A+ + +++ +H N L + ++ + + L+ + ++ + +Q
Sbjct: 710 QDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQ 767
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
S+ + N+ +M +G+KG+ + + Q +G Q+ P
Sbjct: 768 KSLSEY------------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIP 809
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
F+ PH + Y P + VENS+L GL P E F H++
Sbjct: 810 FGFKHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGG 853
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 REGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 905
>gi|397135912|gb|AFO11451.1| RNA polymerase I, partial [Yamadazyma triangularis]
Length = 859
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/593 (26%), Positives = 276/593 (46%), Gaps = 65/593 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPFNIHRLTEYVKNGPNEX 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G R+D AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRXNG----DRLDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHKVKVMPYSTF-RLNLSVTSPYNADFDGDEMNXHVPQSPETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDNFIEYDQVMNMLYWIPNWDGVIPPPAIVKPKPLWSG 387
Query: 545 KQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIKRY 596
KQL SM +P + + G + +G + G L +++
Sbjct: 388 KQLLSMAIPKGIHLQXDVNXMSPNDGGMXIVDGEIIFGVVDKKTVGSTGGGLXHTVMREK 447
Query: 597 RDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
+V L+++ Q+V+ WL G ++ + D S S M+++ + +A+
Sbjct: 448 GPQVCAQLFSSLQKVVNFWLLHNGFSIGIGDTIADSRS------MNQVTSTIEDAK--AK 499
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
Q++++++ N L D E +L+ S+E S L+QA A + ++++L
Sbjct: 500 VQEIILNAQQNKL----DPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKDL-- 550
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGD 775
N++ M +GSKG+ + + Q S C+G Q R P + D
Sbjct: 551 ------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFTKDD 601
Query: 776 NTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMR 833
+ +K + VENS+L GL P E F ++ R+ G + RRL+ +
Sbjct: 602 YSPESKGF-----VENSYLRGLTPQEFFFXAMAGREGLIDTAVKTAETGYIQRRLVKALE 656
Query: 834 DLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
D+ YDGT RN+ G+ I Q Y +G ++ QP+ ++ S+AA+
Sbjct: 657 DIMVXYDGTTRNSLGDXI-QXIYGEDGLDGT--QVEXQPIDTIPG---SDAAF 703
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 268/584 (45%), Gaps = 77/584 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 266 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 325
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 326 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 381
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 382 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 440
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 441 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPTPAILK 500
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P + S V I G+L++
Sbjct: 501 --PRPLWTGKQVFNLIIPKQINLSRASAWHSESETGFITPGDTQVRIEKGELLTGTLCKK 558
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
L G+L ++I D FL Q ++ WL ++ + D + +
Sbjct: 559 TLGTSTGSLI-HVIWVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD------TIADAAT 611
Query: 640 MDEIFYGLREAQ-DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A+ D + +L D + + E R++ S+E + + L++A
Sbjct: 612 MEKINETISKAKNDVKDLIKLAQDKQL-------EPEPGRTMME---SFENRVNQVLNKA 661
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 662 RDDAGSS--------AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 710
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ D ++ + VENS+L GL P E F +++ R+
Sbjct: 711 IPYGFIGRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFYAMGGREGLIDTAV 765
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 766 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 808
>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
GE13]
Length = 813
Score = 185 bits (469), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/587 (25%), Positives = 265/587 (45%), Gaps = 86/587 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+TGDPNI + ++G+P +A L E + +N + L ++
Sbjct: 70 IRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNNG 129
Query: 373 LLEK-GELYVCRKGGLVRIRRIDA---------LELGDIIYRPLTDGDIVLINRPPSIHP 422
E G YV + G RID L++G + R + DGD+V+ NR PS+H
Sbjct: 130 PNEHPGAKYVFKDNG----DRIDLKFARSGSVHLQVGYKVERHINDGDLVIFNRQPSLHK 185
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +KV+P S+ +N SP++ DFDGD ++ ++PQ+ + E+ E+ + KQ+
Sbjct: 186 MSMMGHKIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEICMVPKQI 244
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSV 541
++ Q+ + ++ + QD+L + L+ + + M+ P + P + +
Sbjct: 245 VSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCILKPIPL 304
Query: 542 WSGKQLFSMLLP-----------PDFEYTFPS---KDVYISGGKLISA------EGSSWL 581
W+GKQ+ S+++P PD E T S V I G+L++ GSS
Sbjct: 305 WTGKQIMSLIIPKINIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKKTVGSS-- 362
Query: 582 RDYEGNLFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + ++ Y + F Q V+ WL G ++ + D + + + M
Sbjct: 363 ---QNGIIHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGFSIGIGD------TIADRNTM 413
Query: 641 DEIFYGLREAQDTCN-----FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAAL 695
+ I + A+ N QQ ++ + E+ SL HL+ + + A
Sbjct: 414 ETINKAIASAKQAVNEVILQAQQCKLECQPGLTI----RETFESLVNRHLNKARDSAGAS 469
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPL 755
+Q S+ + N++ M +GSKG+ + + Q + C+G Q+
Sbjct: 470 AQKSLREY------------------NNVKQMVVSGSKGSFINISQMTACVGQQNVEGK- 510
Query: 756 SFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
R P D + ++ + VENS+L GL P E F H++ R+
Sbjct: 511 --RIPFGFKYRTLPHFTKDDQSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLID 563
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN++G+ I+QF Y +G
Sbjct: 564 TAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSFGH-IIQFCYGEDG 609
>gi|397135820|gb|AFO11405.1| RNA polymerase I, partial [Saccharomycopsis capsularis]
Length = 871
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 163/593 (27%), Positives = 271/593 (45%), Gaps = 65/593 (10%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ +
Sbjct: 149 VRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIHRLTEYVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDTG----DRIDLRYHKRAGDIQLQYGWKVERHLIDEDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ IN SP++ DFDGD ++ ++PQ+ R EL L A+ Q
Sbjct: 265 KMSMMAHRVKVMPFSTF-RINLSVTSPYNADFDGDEMNLHVPQSHETRSELKNLAAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+I+ QS + ++ + QD+L + + + + Q+ + + + P +
Sbjct: 324 IISPQSNKPVMGIVQDTLCGVRKMTLKDIFIEYDQVMNICYWIKDWNGIVPQPTILKPKP 383
Query: 541 VWSGKQLFSMLLPPD-----FE----YTFPSKD--VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ SM +P FE Y P D + ++G + + G L
Sbjct: 384 LWTGKQVLSMGIPEGINLIRFEEKTTYLSPQDDGMLIVNGEIMFGVVNKKTVGSSAGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + KV L+ Q+++ WL G ++ + D + + K M I +
Sbjct: 444 HTVFREKGHKVCAQLFGNIQKIVNYWLLHNGFSIGIGD------TIADKTTMTRITTTIN 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ Q++++D+H N L E +L+ ++E + L++A D K+
Sbjct: 498 EAKQKV--QEVILDAHANRLQ----PEPGMTLRE---AFEANVAQLLNKARDDVGKY--- 545
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
+ K N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 546 -----SEKSLKDSNNVKQMVISGSKGSFINISQMSACVGQQMVEGK---RIPFGFADRTL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K +I ENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFTKDDFSPESKGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSAC 879
RL+ + D+ YDGTVRN+ G ++QF Y +G ++ QP+ SL A
Sbjct: 653 RLVKALEDITVHYDGTVRNSTGT-VLQFIYGEDGLDGT--QVESQPLDSLPAS 702
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/590 (25%), Positives = 271/590 (45%), Gaps = 89/590 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R + DGD++L NR PS+
Sbjct: 413 PDIHPGARYVIRSTG----ERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ ++V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL++L +
Sbjct: 469 HKESMMGHRIRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
Q+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 528 QIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVIPQPAILK-- 585
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWL 581
W+GKQ+ SM+LPP +D + + GG+L+ S +
Sbjct: 586 PRPRWTGKQMISMVLPPGLNLLRVDRDKAPLSEKFSPLADGGLLVHGGELMYGMFSKKTV 645
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y + ++F AQ V+ WL G ++ + D + + KI
Sbjct: 646 GATGGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDT-IPDLATIEKI-- 702
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VD SA D+ + L G ++ ++E + S AL+ A
Sbjct: 703 ----------EEAVRVRKEEVD---EITASATDN-TLEPLPGMNVRETFESKVSRALNNA 748
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A ++L N+ + M ++GSKG+++ + Q + +G Q P
Sbjct: 749 RDEAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVGQQSVEGKRIPF 800
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 801 GFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREG 846
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 847 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGEDG 895
Score = 47.4 bits (111), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/592 (27%), Positives = 273/592 (46%), Gaps = 93/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N RL + +
Sbjct: 243 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNG 302
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD +L NR PS+
Sbjct: 303 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSL 358
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 359 HKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 417
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 418 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILK-- 475
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
WSGKQ+ SM+LP P E P D V + GG+L+ S +
Sbjct: 476 PRPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTV 535
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y D + F AQ V+ WL G ++ + D +
Sbjct: 536 GASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLET------- 588
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
+++ ++ ++ VDS ++A +E+T +L G ++ ++E + S AL+
Sbjct: 589 ------IQKIENAVRVRKEEVDS-----ITASATENTLEALPGMNVRETFESKVSRALNN 637
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
A +A A + KD N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 638 ARDEA---------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRI 688
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 689 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 734
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 735 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDG 785
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/590 (26%), Positives = 274/590 (46%), Gaps = 89/590 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R L DGD++L NR PS+
Sbjct: 413 PDVHPGARYVIRSSG----ERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 469 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 528 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILK-- 585
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
W+GKQ+ SM+LP P E P D + + GG+L+ S +
Sbjct: 586 PRPRWTGKQMISMVLPSGLNLLRVDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTV 645
Query: 582 RDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y +V ++F AQ V+ WL G ++ + D + + +KI
Sbjct: 646 GATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDT-IPDLATIQKI-- 702
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VDS +SA ++ + L G + ++E + S AL+ A
Sbjct: 703 ----------EEAVRIRKEEVDS---ITLSATEN-TLEPLPGMSVRETFESKVSRALNNA 748
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PL 755
+A +++L N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 749 RDEAGTETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRIPF 800
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 801 GFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREG 846
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 847 LIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGEDG 895
Score = 47.4 bits (111), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 155/578 (26%), Positives = 268/578 (46%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + E
Sbjct: 346 LMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEH 405
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L G + R + DGD+V+ NR PS+H S+
Sbjct: 406 PGAKYIIRDTG----ERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSM 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ E+ + KQ+++
Sbjct: 462 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSP 520
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP--HRFLSPDIFKISKDSVWS 543
QS + ++ + QD+L L+ + + ++ P L P + + +W+
Sbjct: 521 QSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVI-LKPKVLWT 579
Query: 544 GKQLFSMLLPPDFE---------YTFPSKD-VYISGGKLI-SAEGSSWLRDYEGNLFQYL 592
GKQ+ S+++P + P+ + I G++I + +G L +
Sbjct: 580 GKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTI 639
Query: 593 IKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
K ++ F Q V+ WL G ++ + D + + M E+ ++EA+
Sbjct: 640 WKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADT------MKEVTRTVKEAR 693
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + D+ N L E +L+ S+E + S L+QA +A +
Sbjct: 694 RQV--AECIQDAQHNRL----KPEPGMTLRE---SFEAKVSRILNQARDNAGR------- 737
Query: 712 NLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
+ ++ KD N++ M AGSKG+ + + Q S C+G Q P F++ PH
Sbjct: 738 --SAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPH--- 792
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D++ ++ +I ENS+L GL P E F H++ R+ G
Sbjct: 793 ------FPKDDDSPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 841
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M D+ YDGTVRNA G+ I+QF+Y +G
Sbjct: 842 YIQRRLVKAMEDVMVRYDGTVRNAMGD-IIQFAYGEDG 878
Score = 48.1 bits (113), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H FLS I K+L +C
Sbjct: 52 VGGLLDPRLGTIDRQFKCQTCG-ETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCW 110
Query: 101 KCKTIR 106
C ++
Sbjct: 111 NCGKLK 116
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 159/599 (26%), Positives = 271/599 (45%), Gaps = 104/599 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+K+ E+G+P +A+ L E + +N E + +S
Sbjct: 343 IRGNLMGKRVDFSARTVITPDPNLKIDEVGVPRSIAQNLTFPEIVTPFNIEWMQELVSRG 402
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + +GDI++ NR P++H
Sbjct: 403 NNQYPGAKYIVRDNG----ERIDLRFHPKASDLHLQCGYKVERHVQNGDIIVFNRQPTLH 458
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ ++VLP S+ +N +P++ DFDGD ++ ++PQ++ R E+ +L + +Q
Sbjct: 459 KMSMMGHKIRVLPWSTF-RMNLSVTTPYNADFDGDEMNMHVPQSLETRAEIEQLAMVPRQ 517
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V L QM L MF P + P I K
Sbjct: 518 IITPQANKPVMGIVQDTLTAVRKMTKRDVYLEKDQMMNLLMFLPIWNGKVPIPAILK--P 575
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA---- 575
+W+ KQLFS+++P PD E P K V I G+L+S
Sbjct: 576 KPLWTAKQLFSLIIPGNVNLIRTHSTHPDEEDDGPYKWISPGDTKVIIEHGQLLSGIVCK 635
Query: 576 --EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASH 632
G+S G+L L +V Y+ Q V+ WL G ++ + D
Sbjct: 636 KTVGAS-----AGSLMHVLFVEMGHRVAGAFYSHLQTVVNAWLLYEGHSIGIGDTI---- 686
Query: 633 SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEK 689
++ MD I +++A+ + +++ +H + L + ++ + + L+ +
Sbjct: 687 -ADQQTYMD-IQNTIKKAKQ--DVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDAR 742
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ 749
++ +Q S+ F N+ +M +G+KG+ + + Q C+G Q
Sbjct: 743 DKTGGSAQKSLSEF------------------NNFKSMVVSGAKGSKINISQVIACVGQQ 784
Query: 750 H---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECF 803
+ P FR PH + R VENS+L GL P E F
Sbjct: 785 NVEGKRIPFGFRKRTLPHFIKDDFGPESR--------------GFVENSYLAGLTPSEFF 830
Query: 804 IHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
H++ R+ G + RRL+ M + YDGTVRN+ G Q++QF Y +G
Sbjct: 831 FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMICYDGTVRNSNG-QVIQFRYGEDG 888
Score = 42.4 bits (98), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI E ++SV E G + + +PR G+ + T+ C +C +
Sbjct: 19 VQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRTSRCLTCSG-NMT 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GHFG ++ + H FL+ K+L +C C
Sbjct: 78 ECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYC 112
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 184 bits (468), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/582 (26%), Positives = 265/582 (45%), Gaps = 71/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 365 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVEYG 424
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 425 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNRQP 480
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E++EL+ +
Sbjct: 481 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVSELMIV 539
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
K +++ QS R ++ + QD+L + + D+ + + M L + P +
Sbjct: 540 PKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPAIVK 599
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSSWL 581
+W+GKQ+FS+++P + V I G+L++ L
Sbjct: 600 PRPIWTGKQIFSLIIPKQINMVRTAAWHNDSETGDNSPGDTMVRIEKGELLTGTLCKKTL 659
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + + D FL Q ++ WL G ++ + D + S + + +
Sbjct: 660 GTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDTI--ADSATMEKIN 717
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+ IF E +D Q +S+ R++ S+E + + L++A
Sbjct: 718 ETIFKAKNEVKDLIKMAQ----------EKQLESQPGRTMME---SFENRVNQVLNRARD 764
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
+A + A K S+ N++ AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 765 EA--------GSSAQKSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGK---RIP 813
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D ++ + VENS+L GL P E + H++ R+
Sbjct: 814 FGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTAVKT 868
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 869 SETGYIQRRLVKAMEDVMVKYDGTVRNSLGD-VIQFLYGEDG 909
Score = 44.7 bits (104), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+++PRLG + +C +CG C GHFG ++ + H FL + LL +C C
Sbjct: 52 LSDPRLGTIDRQTKCETCGGS-MAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCS 110
Query: 104 TI 105
I
Sbjct: 111 HI 112
Score = 43.5 bits (101), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR+ +++ GI+A Q L L IS G + HL I+ + ++ G
Sbjct: 1360 VDATRTVSNHLIEVIEVLGIEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHL 1419
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + + P ++ F + AA D+L+G + + G++ +
Sbjct: 1420 MAITRHGI-----NRNDTGPMMRCSFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPI 1474
Query: 1252 GTG 1254
GTG
Sbjct: 1475 GTG 1477
>gi|31127038|gb|AAF26658.2|AF139008_1 RNA polymerase II largest subunit [Speleonectes tulumensis]
Length = 636
Score = 184 bits (468), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 163/620 (26%), Positives = 265/620 (42%), Gaps = 100/620 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P VA+ L E + +N +++ +
Sbjct: 1 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQELVRRG 60
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 61 NAQYPGAKYIIRDNG----ERIDLRYHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLH 116
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N +P++ DFDGD ++ ++PQ++ R E+ + +Q
Sbjct: 117 KMSMMGHRVKVLPWSTF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIENIHVTPRQ 175
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+L A + + V L QM L MF P + P I K
Sbjct: 176 IITPQANKPVMGIVQDTLCAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPQPAILK--P 233
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQLFS+++P PD E P K + K++ G
Sbjct: 234 KPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGIMCK 293
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + +V Y Q V+ WL + G ++ + D
Sbjct: 294 KTLGTSAGSLLHICMLELGHEVCGHFYGNIQTVINNWLLLEGHSIGIGDT---------- 343
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ + Q + Q N + AK+ + + E L Q
Sbjct: 344 ---------IADPQTYLDIQ--------NTIKKAKEDVIDVIHKAHNDELEPTPGNTLRQ 386
Query: 698 ASVDAFKHVFWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
+ + D ++ A K ++ N+L AM AGSKG+ + + Q C+G Q+
Sbjct: 387 TFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEG 446
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIH 805
P FR PH + Y P + VENS+L GL P E + H
Sbjct: 447 KRIPFGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFH 490
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 491 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCG 549
Query: 864 PTGEIGDQPVGSLSACAISE 883
T E P LS A +
Sbjct: 550 ETVEFQSLPTVKLSNKAFEK 569
>gi|390960610|ref|YP_006424444.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
gi|390518918|gb|AFL94650.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
Length = 905
Score = 184 bits (468), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 165/596 (27%), Positives = 272/596 (45%), Gaps = 94/596 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DP I + E+G+P VA L + E++ +N+E+L + EK
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIAVAMELTVPEKVTEFNFEKLKKMV-LNGPEKYP 379
Query: 377 GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G YV G RIR ++ L+LG + R L DGDIVL NR PS+H S++A
Sbjct: 380 GANYVIDPEGR-RIRLMENNLEIIAERLDLGWTVERHLLDGDIVLFNRQPSLHRMSIMAH 438
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 439 RVRVMPYRTF-RLNLSVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYG 497
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGK 545
L++ QD ++ +LL + + +++Q+ MF + PD + + +WSGK
Sbjct: 498 GPLIAGIQDHISGGYLLTREGAYFTRSEVEQMLMFAGINVDKLPEPDKVE-NGVELWSGK 556
Query: 546 QLFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKL 572
+FS+LLP D E P + YI GKL
Sbjct: 557 TIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLVPDPEEVRKLAYDGFTYIQNGKL 616
Query: 573 ISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL 629
+S + ++ R+ +G L +++ Y ++ FL ++ ++ +G T ++ D L
Sbjct: 617 LSGAIDKKAYGRE-DGKLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDL 675
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SY 687
+ +D I +REA++ + L+ A + L G+ L +
Sbjct: 676 PREA------LDRIHEIIREAEE-----------RVERLIEAYKNGELEPLPGKTLEETL 718
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E A L++A +A K +A KY N + M K G++G +L + Q + LG
Sbjct: 719 ESNIMAVLAEARDNAGK--------VAEKYLGMGNHAVIMAKTGARGKMLNITQMAAMLG 770
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q +R + GD A+ + V NS+ +GL P E F H++
Sbjct: 771 QQSIRGKRLYRG---YRGRVLTHFKPGDLGARARGF-----VTNSYKSGLTPQEYFFHAM 822
Query: 808 TSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 823 GGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFKYGEDG 876
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVVDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG ++ I+H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIK 107
>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
Length = 996
Score = 184 bits (468), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 168/696 (24%), Positives = 306/696 (43%), Gaps = 82/696 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L +
Sbjct: 253 VRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNG 312
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + DGD ++ NR P H
Sbjct: 313 PNEHPGARYVIRDTG----ERIDLRFHRRAGDLVLQYGWKVERHIVDGDXIIFNRQPYXH 368
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L +
Sbjct: 369 KESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLN 427
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V L+ Q+ + ++ P + P +
Sbjct: 428 IVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLWVPEWDGIIPQPAVLKPTP 487
Query: 541 VWSGKQLFSMLLPPDFEYT-----FPSKD--VYISGGKLI-SAEGSSWLRDYEGNLFQYL 592
+W+GKQ+ S+++P P KD +++S G+L+ + G + +
Sbjct: 488 LWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIFVSSGELMFGLLNKKVVGAAMGGIIHIV 547
Query: 593 I-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + ++F AQ V+ WL G ++ + D + L++E + +
Sbjct: 548 YNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETIR---LIEEAVNA--QKR 602
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ Q+ +S ++ L E ++E + S AL++A DA ++
Sbjct: 603 EVAEITQMATESRLDTLPGMNVRE----------TFESRVSKALNKARDDAGTVTEDSLK 652
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 653 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 700
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 701 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGPIDTAVKTAETGY 750
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
+ RRL+ + D+ YDGT+RN+ G+ IVQF Y +G I Q L S+
Sbjct: 751 IQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLD--GAHIEPQ---RLDIIVCSD 804
Query: 884 AAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEV 943
A + D I L++ +P + + + AD + L + + + E+
Sbjct: 805 AKFEK-DFRIDLMDDNPRTTVSAEFLEQATEIAADGKVQQVLDEEYEQLKAAREFLRKNK 863
Query: 944 KNHLECLML----SDIVSTSMIIYSPQTGSMKHFSP 975
K+ + L L I+ T+M ++ + GS + P
Sbjct: 864 KDDSQDLQLPLNIPRILETAMTTFNIKNGSRSNLHP 899
>gi|219852750|ref|YP_002467182.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
E1-9c]
gi|219547009|gb|ACL17459.1| DNA-directed RNA polymerase subunit A' [Methanosphaerula palustris
E1-9c]
Length = 880
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 215/889 (24%), Positives = 368/889 (41%), Gaps = 141/889 (15%)
Query: 49 LGLPNPTNECSSCGAKDRKA--CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
LG+ +P C +C D+KA C GHFG I+ ++H + I KLL C +C
Sbjct: 50 LGVIDPGLRCKTC---DQKAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCREC---- 102
Query: 107 KERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNK 166
G + K + + + LS KD+ K DE+ K N
Sbjct: 103 -------GRLLLSSSEIEKVTITSEEDLTGDV---LSEKDIK-KERTCPHCDEQQLKINF 151
Query: 167 KLPDDYWGFIPFDAQQEENSVKP---NRKVLSCKQVSYLLKDVDPSI-REEFILSKDAPF 222
+ P + + D ++ E+ + P ++ L ++P + R E+ +
Sbjct: 152 EKPTTFSEVLLEDGKKVEHKLTPADIRARLEKIPDSDLRLLGINPDVARPEWTI------ 205
Query: 223 LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSH------LVQD 276
L PV P VT P + D+ T L ++ R E +++D
Sbjct: 206 LTVLPVPP----VTMRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQDAGAPQLIIED 261
Query: 277 CLKISKLHLDKSSRKDSA---EVRQKKNIDISNSSGLRWIKD-----VVLGKRNDDCFRM 328
++ + H+ + A R + + S KD + GKR + R
Sbjct: 262 LWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRLKGKDGRFRGSLSGKRVNFSART 321
Query: 329 VVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLV 388
V++ +PN+ + E+GIP +A + + R+ +N E L V + +G +C ++
Sbjct: 322 VISPNPNLSISEVGIPIGIANEMSVPVRVTPYNIEELRVYVRKGPNREGLKDICGANYVI 381
Query: 389 RI--RRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
R RR+ + +E G + R L DGDIVL NR PS+H S++A +KV+
Sbjct: 382 RPDNRRLRLADGNLETIAEQIEPGWTVERQLRDGDIVLFNRQPSLHRMSIMAHRIKVME- 440
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
+NP C P++ DFDGD ++ ++PQ AR E + LVA+ + +++ + G ++
Sbjct: 441 GRTFRLNPAVCPPYNADFDGDEMNLHVPQTEEARAEASILVAVQQNILSPRFGGPIIGGI 500
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL----------SPDIFKISKD-SVWSG 544
D ++ +L D L+ F FL P+ KI WS
Sbjct: 501 HDHISGIFMLTHD-----------LRWFAKDDFLYLLKYYDFDHMPEPGKIENGIPYWSN 549
Query: 545 KQLFSMLLPPDFEYTFPS----------KD-------VYISGGKLISAE-GSSWLRDYEG 586
KQ+FSM+LP + F + KD V I G+LI+ + ++G
Sbjct: 550 KQVFSMILPNELNMVFKASSCANCDVCVKDQCERDAFVRILEGQLITGTIDKKSIGAFDG 609
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ +I++Y ++ F+ ++ + + + G + + D L+ + +DE+
Sbjct: 610 EILNRIIRQYGMERAAKFIDDMTKLSIKGIMIDGFSFGIDDEDLSKTEYGQ---IDEV-- 664
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQ-GEHLSYEKQRSAALSQASVDAFK 704
L A N + + + M + E T +Q + L + R+ ++ A +
Sbjct: 665 -LDNATTDVNRRIRIYEDGQLEPMPGRTPEETLEMQIMQVLGKSRDRTGEIAGAHL---- 719
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
NS + M +G++G++L L Q + C+G Q R +
Sbjct: 720 --------------GLGNSAVLMAVSGARGSMLNLTQMAGCIGQQSVRGERIVRGYFGRT 765
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLP 821
+ R GD A + V++S+ +GLNP E F H++ R+ D A
Sbjct: 766 LPHFKR---GDRGADAHGF-----VKHSYKSGLNPTEFFFHAIGGRE-GLVDTAVRTSQS 816
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G L RRL+ ++DL YDGTVR G +I+QF Y +GT G GD
Sbjct: 817 GYLQRRLINALQDLKVEYDGTVRTT-GRRIIQFRYGEDGTDPMRGSFGD 864
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 161/589 (27%), Positives = 268/589 (45%), Gaps = 85/589 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 346 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 405
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 406 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 461
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 462 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 520
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMF--CPHRFLSPDIFK 535
K +++ QS R ++ + QD+L + + D+ + + M L + + +P I K
Sbjct: 521 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILK 580
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T S V I G+L+S
Sbjct: 581 --PQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKK 638
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL ++ + D + +
Sbjct: 639 ALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD------TIADAA 692
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE-----HLSYEKQRSA 693
M++I + A++ N + A++ RSL+ E S+E + +
Sbjct: 693 TMEKINETISAAKNEVK----------NLIKKAQE----RSLEPEPGRTMMDSFENKVNQ 738
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
L++A DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 739 VLNKARDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 790
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P D ++ + VENS+L GL P E F H++ R+
Sbjct: 791 K---RIPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGL 842
Query: 814 FSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 843 IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 890
Score = 45.8 bits (107), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 20 ISLGISTDTEKEKLSVMEI--GAVSE--------VTNPRLGLPNPTNECSSCGAKDRKAC 69
+ GI + E ++SV++I G +E +++PRLG + +C +C A + C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTA-NMAEC 76
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
GHFG ++ + H F+ + ++ S+C C I
Sbjct: 77 PGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKI 112
Score = 42.4 bits (98), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ +++ GI+A + L L IS G + HL I+ +T++ G
Sbjct: 1342 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1401
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + + P ++ F + AA D+L+G + + G++ +
Sbjct: 1402 MAITRHGI-----NRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPI 1456
Query: 1252 GTGG 1255
GTGG
Sbjct: 1457 GTGG 1460
>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
Length = 872
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 157/570 (27%), Positives = 266/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIHRLTELVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+I+
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICAVPLQIISP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P+ + +W+G
Sbjct: 328 QSNKPIMGIVQDTLCGVRKMTLRDNFVEYDQVMNMCFWIPDWDGVIPEPAILKPKPLWTG 387
Query: 545 KQLFSMLLPPDFE---------YTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL S+ +P ++ P+ + I G L + G L ++
Sbjct: 388 KQLLSLCIPKGIHLQRFDGGASWSSPTDSGMLIIDGEVLFGVVDKKTVGATAGGLIHTVM 447
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ V L+ Q+V+ WL G ++ + D +A S R EI + EA++
Sbjct: 448 REKGSAVCAKLFGNMQKVVNFWLLHNGFSIGIGDT-IADASTMR-----EITNTISEAKE 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++ +H+N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILLAHLNTL----EPEPGMTLRE---SFENNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M GSKG+ + + Q S C+G Q R P +
Sbjct: 553 L--------NNVKQMVVCGSKGSFINISQMSACVGQQ---IVEGRRIPFGFADRTLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YD T RN+ G+ ++QF Y +G
Sbjct: 657 ALEDIMVHYDSTARNSLGD-VIQFVYGEDG 685
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 162/635 (25%), Positives = 288/635 (45%), Gaps = 109/635 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPNI + ++G+P +A+ L E + +N + L + + +
Sbjct: 284 LMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTFPELVTPFNIDLLQGLVENGPSVH 343
Query: 376 KGELYVCRKGGLVRIRRID-----------ALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G YV R G RID L+LG + R L DGDI++ NR PS+H S
Sbjct: 344 PGAKYVIRDTG----ERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPSLHKMS 399
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ V+V+P S+ +N +P++ DFDGD ++ ++PQ++ + E++E+ + KQ+++
Sbjct: 400 MMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQSVETKAEISEICMVPKQVVS 458
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC---PHRFLSPDIFKISKDSV 541
QS + ++ + QD+L A + L+ + + M+ R P I K +
Sbjct: 459 PQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNILMWVLDWDGRLPIPCILK--PIPL 516
Query: 542 WSGKQLFSMLLP-------------PDFEYTFPS---KDVYISGGKLI------SAEGSS 579
W+GKQ+ SM++P P+ E++ S V I G+L+ G++
Sbjct: 517 WTGKQILSMIIPKGINSDNLRHSGHPENEHSDISPGDTKVLIEDGELLCGIVCKKTVGAT 576
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
++G + + + +K DFL Q V+ +WL G ++ + D +
Sbjct: 577 ----HQGLVHVIMNEMGPEKAKDFLNGCQAVVNQWLLQNGFSIGIGDTIADDET------ 626
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
M I + A+ +++ ++ + L A + R ++E + + L+ A
Sbjct: 627 MKNITNTISNAK--SRVAEIIGEAQQDKLECAP-GMTIRE------TFEHKVNKELNTAR 677
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLS 756
A K A + ++N++ M AGSKG+ + + Q + C+G Q+ P
Sbjct: 678 DAAGKS--------AEQSLKEENNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPFG 729
Query: 757 FRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
F+F PH D++ ++ + VEN +L GL P E F H++ R+
Sbjct: 730 FKFRTLPH---------FTKDDHSPESRGF-----VENCYLRGLTPQEFFFHAMGGREGL 775
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 776 IDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IVQFCYGEDG----------- 823
Query: 872 PVGSLSACAISEAAYSALDQPISLLETSPLLNLKN 906
+ AC + + L + + L+ LK+
Sbjct: 824 ----MDACFVEPQTFDTLPMNNAEFDNKYLIELKD 854
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 158/603 (26%), Positives = 279/603 (46%), Gaps = 91/603 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GK D R V+T DPN+++ ++G+P +A+ + E + S+N E++
Sbjct: 318 IRGNLMGKLVDFSARTVITPDPNLRIDQVGVPRIIAQNMTFPEIVTSFNIEKMQ-----E 372
Query: 373 LLEKGEL-YVCRKGG----LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
L+++GE Y+ R+ G L +++ LELGD + R + DGD+V++NR P++ ++
Sbjct: 373 LVQRGEAKYLIRENGDRFDLKYVKKNPVLELGDKLERNIRDGDLVVLNRQPALRKEHMMG 432
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
VKVLP S+ +NP C SP++ +FDGD ++ ++PQ++ R E +++ + +I Q+
Sbjct: 433 HRVKVLPWPSI-RLNPSCASPYNANFDGDEMNLHVPQSMETRAEAEQILITSRLIITPQA 491
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSG 544
+ ++ + QD+L A+ L + V L QM L MF P + P I K W+G
Sbjct: 492 NKPVMGIVQDTLVGAYKLTKRDVFLEKEQMMNLLMFLPTWDGKMPKPAILKPRPQ--WTG 549
Query: 545 KQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDY 584
KQLF++++P PD E P K + K++ G L
Sbjct: 550 KQLFTLIIPGNVNMMITHSTHPDDEDEGPYKWISPGDTKVMVENGELVMGILCKKTLGAS 609
Query: 585 EGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+L + +V Y Q V+ WL G ++ + D+ R MD I
Sbjct: 610 AASLLHIIFMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDML-----GDRPTYMD-I 663
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
++ A++ + +++ S + L + ++L+ + +++ +DA
Sbjct: 664 QATIQNAKE--DVIEVIQKSRNDELEPTPGNTLRQTLENQ-----------VNRILIDAR 710
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR-- 758
+N ++ N+L AM AGS G+ + + Q C+G Q+ P FR
Sbjct: 711 NETGGSAKNSLTEF----NNLKAMVVAGSSGSNVNISQVIACVGQQNVEGKRIPFGFRKR 766
Query: 759 -FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH + + P + F +GL P E + H++ + + D
Sbjct: 767 TLPHFIK----------------DDFGPES---RGFGSGLTPSEFYFHAMDRK--ALIDT 805
Query: 818 A---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVG 874
A G + R L+ M + YDGTVRN+ G +I+QFSY +G S + E+ P
Sbjct: 806 AVKTANTGYIQRSLIKAMESVMVHYDGTVRNSAG-RILQFSYGGDGLSAESVELQKMPTV 864
Query: 875 SLS 877
+LS
Sbjct: 865 NLS 867
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGA 63
++ + LGI + E K SV G + + +PR G+ N + C +C
Sbjct: 14 VVKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQGVTNRSARCQTCDG 73
Query: 64 KDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ C GHFG I + H F ++L +C C
Sbjct: 74 -NMNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYC 111
>gi|119643505|gb|ABL85574.1| RNA polymerase II largest subunit [Cetraria islandica]
Length = 1003
Score = 184 bits (467), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 150/577 (25%), Positives = 270/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 276 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEXVTPYNIQKLHQLVKNGPNEH 335
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 336 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 391
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 392 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 450
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + ++W+G
Sbjct: 451 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 510
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P S++ + ISGG+L+ + + G +++
Sbjct: 511 KQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKVVGASGGGVIHIVFN 570
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D ++ + + ++
Sbjct: 571 EKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIA-------------QIEEA 617
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
Q+ V + +SA +E SL G ++ ++E + S AL++A DA ++
Sbjct: 618 VILQKKEVAA---ITLSATANE-LESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 673
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 674 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 721
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 722 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 771
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 772 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 807
>gi|327242139|gb|AEA40848.1| RNA polymerase II largest subunit [Trichomonas gallinae]
Length = 1019
Score = 184 bits (467), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 163/582 (28%), Positives = 267/582 (45%), Gaps = 85/582 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR+D R V++ DP+I + ++G+P +A+ L E + + N + L S+ + G
Sbjct: 275 GKRDDFSARSVISPDPSISIDQVGVPEDLAKILTFPEIVTTTNQKWLESIVMKGHDDIGG 334
Query: 378 ELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
YV G AL G I+ R + D DIV+ NR PS+H S++
Sbjct: 335 ANYVTNDHGTKTDLAFCNDLSTIALSPGYIVDRHIRDNDIVIFNRQPSLHKMSMMGHRAL 394
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
++P + +N +P++ DFDGD ++ ++PQ+ AR E+ ++A+ KQ+I+ Q+ R +
Sbjct: 395 LMP-ARTFRLNLCDTTPYNADFDGDEMNLHVPQSQAARAEVRHIMAVPKQIISPQANRPV 453
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR----FLSPDIFKISKDSVWSGKQL 547
+ L QD+L LL + L+ Q+ L M+ P P I K + +WSGKQ+
Sbjct: 454 IGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPVQ--LWSGKQV 511
Query: 548 FSMLLPP-------------DFEYTFPSKD--VYISGGKLISA--EGSSWLRDYEGNLFQ 590
FS+ LP D + P+ D V I G L++ + +S R EG+L
Sbjct: 512 FSLFLPKINYDHFSNGARDDDKKSWMPANDTRVIIRDGHLLAGLLDKTSCARS-EGSLTH 570
Query: 591 YLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+I Y D DFL Q ++ WL RG ++ L D + + ++D++ + E
Sbjct: 571 VVINSYNTDIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVP------QSVLDQVEEKINE 624
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL-SYEKQRSAALSQASVDAFKHVFW 708
+D + +A+ + R ++ S+E + ++AL+Q DA+K +
Sbjct: 625 VEDNVK----------GVIRTAQSGKLERRPGMTYIQSFEAEVNSALNQVLGDAYKLIQK 674
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
DI+ +DNS + M AGSKG + Q + Q+
Sbjct: 675 DIR--------RDNSFIEMLTAGSKGANFNVTQVIGVVAQQN---------------IEG 711
Query: 769 NRLRAGDNTECAKSY-------IPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA--- 818
R++ G N Y IP +S++ GL P E H++ R + D A
Sbjct: 712 KRVKFGFNGRTLPHYQKHEYGLIPRGFCRHSYIEGLTPPEFLFHAMGGR-TGIIDTACKT 770
Query: 819 DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M AYDGTVRN+ N++VQF Y +G
Sbjct: 771 SDTGYIQRRLVKSMESHHVAYDGTVRNSL-NEVVQFVYGGDG 811
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 152/583 (26%), Positives = 268/583 (45%), Gaps = 89/583 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN++L E+G+P +A+ L ER+ +N L ++ E
Sbjct: 376 LMGKRVDFSARTVITGDPNLELDEVGVPESIAKNLTYPERVTPYNITALQALVAKGPDEL 435
Query: 376 KGELYVCRKGG-LVRIRRIDA-----LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV + G + +R + + L G I+ R L +GD VL NR PS+H S++A
Sbjct: 436 PGARYVVKDSGDRIDLRYLPSGTSIDLAYGWIVERHLRNGDYVLFNRQPSLHKMSMMAHR 495
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VK+LP S+ +N P++ DFDGD ++ ++PQ+ R EL ++ + +Q+++ Q+ +
Sbjct: 496 VKLLPYST-FRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELQQIAWVPRQIVSPQANK 554
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLF 548
++ + QD+L + +Q + ++ P L P + +W+GKQ+
Sbjct: 555 PVMGIVQDTLCGIRKFTLRDCFMDRDFVQNIMLWVPEWDGLLPPPAIVKPKPMWTGKQIL 614
Query: 549 SMLLP--------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRD 598
SM +P + + P D V + G++ Y G + + + R+
Sbjct: 615 SMCIPRGVNLFIDNEAHSSLPDDDSGVLVDDGEI-----------YYGVINKKTVGAQRE 663
Query: 599 KVLDFLY-------------AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
++D ++ Q+V+ WL G ++ + D + + + M I
Sbjct: 664 SLVDLIFREKGPEICRLFFTGVQKVVNFWLLHNGFSIGIGD------TVADRDTMRTITD 717
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
++ A+D + + L+ + + R ++E + + +L++A A +
Sbjct: 718 YIQTAKDEV---AVFISKAQQDLIEPEPGMTIRE------TFESKVTGSLNRARDTAGQS 768
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF--- 759
A + + N++ M AGSKG+ + + Q S C+G Q P FR+
Sbjct: 769 --------AERSLAASNNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRIPFGFRYRSL 820
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
PH D+T A+ + VENS+L GL P E F H++ R+
Sbjct: 821 PH---------FTKDDHTPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVK 866
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 867 TAETGYIQRRLVKALEDVMVNYDGTVRNSLGD-IVQFVYGEDG 908
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEI-----------GAVSEV----- 44
M N F + P + I GI + E LSV +I GA S V
Sbjct: 1 MQNAFTYS--QAPIRRVRQIQFGILSPEETRALSVAKIDSPEIYQDVGLGAGSSVGGRPK 58
Query: 45 ----TNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
+PR+G + +C +CG + C GHFG I+ + H F++ + K+L +C
Sbjct: 59 AGGLADPRMGTIDRNFKCQTCG-EGMAECPGHFGHIELGRPVYHVGFMTKVKKILECVCV 117
Query: 101 KCKTIRKE 108
+C T++ +
Sbjct: 118 QCGTLKSD 125
>gi|412989108|emb|CCO15699.1| DNA-directed RNA polymerase III largest subunit [Bathycoccus
prasinos]
Length = 1499
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 169/589 (28%), Positives = 261/589 (44%), Gaps = 88/589 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR D R V++ DPN+++ E+G+P +A +L E +N+ N L +L+ GE
Sbjct: 379 GKRVDFTARTVISPDPNLRIDEVGLPQHIAMQLTYPETVNNNNIAELR-----QLIINGE 433
Query: 379 -------LYVCRKGGLV---------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
++ G R R L+ GDI+ R + DGDIVL NR PS+H
Sbjct: 434 GKWPGANFVKSKQSGHFSAQYLKYGDRNRVAKKLKPGDIVERHVRDGDIVLFNRQPSLHK 493
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++A KV+P + + N C+P++ DFDGD ++ ++PQ AR E L+ + + L
Sbjct: 494 MSIMAHRAKVMPWRT-LRFNECVCAPYNADFDGDEMNIHLPQTEEARAEAISLMGVTQNL 552
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKD 539
++G L++ QD LTA+ LL V Q QL + S D+ +
Sbjct: 553 CTPKNGEILIAATQDFLTASFLLTSKEVFFDRSQFGQLAAYMSDALESIDLPSPAIVKPI 612
Query: 540 SVWSGKQLFSMLLPPDFE-------------YT-----FPSKDVY--ISGGKLISAE-GS 578
+W+GKQ+FS+L+ P YT S D Y I ++IS + G
Sbjct: 613 EMWTGKQIFSVLIRPRMRDQIFVNLEVSEKAYTKVNQQMCSNDGYVCIQNSEIISGQLGK 672
Query: 579 SWLRDYEGN---LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
+ L GN LF L Y D + + ++ W+ +RG ++ + D+ +
Sbjct: 673 ATLGG--GNKTGLFYVLNSDYGADVAANAMNRLAKLAARWIGIRGFSIGIDDVKPSPELE 730
Query: 635 SRKILMDEIFYGLREAQD-TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
K + + G + + +F++ +D L ++E T L+ E L
Sbjct: 731 REK--QNRVDSGYAKCDERIASFEKGTLD-----LQPGCNAEQT--LEAEVLGVLSAVRE 781
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
A A +DA K NS L M GSKG+ + + Q C+G Q A
Sbjct: 782 AAGNACLDAL---------------PKLNSPLVMALCGSKGSTINISQMMACVGQQ---A 823
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + + G+ T AK + V NSF +GL P E F H++ R+
Sbjct: 824 VGGTRPPDGFFERSLPHFKRGEKTPAAKGF-----VANSFYSGLLPTEFFFHTMAGREGL 878
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G ++RRLM + DL YDGTVRN+ G+ IVQ Y +G
Sbjct: 879 VDTAVKTAETGYMSRRLMKALEDLSLGYDGTVRNSSGD-IVQLEYGDDG 926
Score = 45.4 bits (106), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 44 VTNPRLGLPNPTN-ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG N + EC +C K C GHFG++K + H + I L +C +C
Sbjct: 75 ILDPRLGTTNKSQPECQTCKGKIMD-CSGHFGYLKLELPVFHVGYFKAIVHCLQCVCKEC 133
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Cucumis sativus]
Length = 1853
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 161/589 (27%), Positives = 268/589 (45%), Gaps = 85/589 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 346 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 405
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 406 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQP 461
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 462 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 520
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMF--CPHRFLSPDIFK 535
K +++ QS R ++ + QD+L + + D+ + + M L + + +P I K
Sbjct: 521 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILK 580
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T S V I G+L+S
Sbjct: 581 --PQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKK 638
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL ++ + D + +
Sbjct: 639 ALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD------TIADAA 692
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE-----HLSYEKQRSA 693
M++I + A++ N + A++ RSL+ E S+E + +
Sbjct: 693 TMEKINETISAAKNEVK----------NLIKKAQE----RSLEPEPGRTMMDSFENKVNQ 738
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
L++A DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 739 VLNKARDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 790
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P D ++ + VENS+L GL P E F H++ R+
Sbjct: 791 K---RIPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGL 842
Query: 814 FSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 843 IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 890
Score = 45.8 bits (107), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 20 ISLGISTDTEKEKLSVMEI--GAVSE--------VTNPRLGLPNPTNECSSCGAKDRKAC 69
+ GI + E ++SV++I G +E +++PRLG + +C +C A + C
Sbjct: 18 VQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTA-NMAEC 76
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
GHFG ++ + H F+ + ++ S+C C I
Sbjct: 77 PGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKI 112
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ +++ GI+A + L L IS G + HL I+ +T++ G
Sbjct: 1342 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1401
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + + P ++ F + AA D+L+G + + G++ +
Sbjct: 1402 MAITRHGI-----NRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPI 1456
Query: 1252 GTGG 1255
GTGG
Sbjct: 1457 GTGG 1460
>gi|119643566|gb|ABL85577.1| RNA polymerase II largest subunit [Hypotrachyna degelii]
Length = 925
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 151/577 (26%), Positives = 268/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 184 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 243
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR H S+
Sbjct: 244 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVXRHIVDGDYIIFNRQLXXHKESM 299
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 300 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 358
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + ++W+G
Sbjct: 359 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 418
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISA-EGSSWLRDYEGNLFQYLI- 593
KQ+ S+++P S++ + ISGG+L+ + G + +
Sbjct: 419 KQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKTVGASPGGVIHIVFN 478
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + +DF AQ V+ WL G ++ + D H+ +++ ++
Sbjct: 479 EKGPEAAMDFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIENA 525
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V + SA ++E SL G ++ ++E + S AL++A DA ++
Sbjct: 526 VNNQKAEV---LEITRSATENE-LESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 581
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 582 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 629
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 630 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 679
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 680 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 715
>gi|397135818|gb|AFO11404.1| RNA polymerase I, partial [Kuraishia capsulata]
Length = 870
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 159/576 (27%), Positives = 272/576 (47%), Gaps = 77/576 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLSYPETVTPYNIQKLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + Q+ + + P P I K +W
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMLFWIPQWDGVIPQPAILK--PKPLW 385
Query: 543 SGKQLFSMLLPPD-----FEYTFPS-KD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
SGKQL S +P F+ + S KD + ++G + + + G L ++
Sbjct: 386 SGKQLLSTCIPKGIYLQRFDGSLLSPKDSGMLIVNGEIMFGVVNKATVGATAGGLIHTVM 445
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+ Q+V+ WL G ++ + D + + + M I + EA++
Sbjct: 446 REKGPQVCAQLFGNIQKVVNYWLLHNGFSIGIGD------AIADRETMRVITETIGEAKE 499
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q +++D+ N L+ + + R S+E++ S L++A A K +++
Sbjct: 500 KV--QNIILDAQRN-LLEPEPGMTVRE------SFEQKVSKVLNEARDSAGKSAELSLKD 550
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCA 766
N++ M AGSKG+ + + Q S C+G Q +SF F PH
Sbjct: 551 --------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRISFGFADRSLPH----- 597
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + +K + VENS+L GL P E F H++ R+ G +
Sbjct: 598 ----FTKDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 649 QRRLLKALEDIMVHYDGTARNSLGD-VIQFLYGEDG 683
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 184 bits (466), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 161/590 (27%), Positives = 259/590 (43%), Gaps = 98/590 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + E+G+P +A L E + +N ER+ + E
Sbjct: 273 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEH 332
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L DGD+V+ NR PS+H S+
Sbjct: 333 PGAKYVIRDTG----ERIDLRYHKRAGDIPLQYGYKVERHLNDGDVVIFNRQPSLHKMSM 388
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ E+ E+ + KQ+I+
Sbjct: 389 MGHKVRVMPYST-FRLNLSVTSPYNADFDGDEMNMHVPQSEETNAEIKEICMVPKQIISP 447
Query: 486 QSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + DS + L M L + P + +W+G
Sbjct: 448 QSNKPVMGIVQDTLCGIRKFTKRDSFVDKALVMNILMWVADWDGVIPTPAILKPQPLWTG 507
Query: 545 KQLFSMLLP------------PDFEYTFPS---KDVYISGGKLIS---------AEGSSW 580
KQL +M++P PD E + S V + G+LIS A W
Sbjct: 508 KQLVTMIVPKNINCITYHSAHPDDEKSDISPGDTKVVVENGELISGIVCKKTVGASNGGW 567
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + KR F AQ V+ WL G ++ + D +A + I
Sbjct: 568 VHVAMNEHGPEVAKR-------FFSGAQAVVNYWLLQHGFSIGIGDT-IADGKTTEHIT- 618
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+T N + V + L + +D+ ++E + + L++A
Sbjct: 619 -----------ETINSAKQRVSEII--LSAQQDTLECAPGMTIRETFENKVNRELNRARD 665
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
+ + A K ++N++ M +GSKG+ + + Q S C+G Q+ P F
Sbjct: 666 HSGRS--------AEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGF 717
Query: 758 RF---PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
+F PH Y P + VENS+L GL P E + H++ R+
Sbjct: 718 KFRTLPH----------------FSKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREG 761
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ GN I+QF Y +G
Sbjct: 762 LIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGN-IIQFCYGEDG 810
>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
Length = 1255
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 235/952 (24%), Positives = 403/952 (42%), Gaps = 183/952 (19%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTN--PRLG----LPNPTNE----CSS 60
E+ + ++ I G+ + E K SV++I + N P+ G L T E CSS
Sbjct: 4 EIVTKRISSIQFGLFSPEEIRKSSVVQIIHPETMENGFPKSGGLIDLKMGTTERAFLCSS 63
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC-------KTIRKER---- 109
C KD +C GHFG I+ + H +++ I K+L +C C K ++K+
Sbjct: 64 C-EKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLKKDLNFVW 122
Query: 110 --------------QKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIV 155
+ G +QP + K + + F ++ GK ++
Sbjct: 123 NISKTKSVCEGEIGENGFTGCGNKQPVIKK-------ELMSLIAFMKGEEESDGK---VI 172
Query: 156 EIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFI 215
E++ KK+ + F+ FD + KP +L+ V V PSI E +
Sbjct: 173 LNGERVHNILKKIVNXDAVFLGFD----QKFTKPEWLILTVLLVP--PPSVRPSIVMEGM 226
Query: 216 LSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR-DIELSHLV 274
L + H++ ++ A ++ KK + H+ + DY ++ ++
Sbjct: 227 LRAEDDL---------THKLADIVKANTYLKKYELEGAPGHVVR--DYEQLLQFHIATMI 275
Query: 275 QDCLKISKLHLDKSSR---KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
+ + L KS R SA ++ K+ ++ ++GKR D R V+T
Sbjct: 276 DNDISGQPQALQKSGRPLKSISARLKGKEG----------RVRGNLMGKRVDFSARSVIT 325
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
DPNI ++E+G+P ++A+ E + +N +RL+ +S E G YV R G
Sbjct: 326 PDPNISVEEVGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPGANYVIRNDG---- 381
Query: 391 RRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTIN 442
+RID LE G ++ R + DGD+VL NR PS+H S++A V+V+ +N
Sbjct: 382 QRIDLNFNRGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVME-GKTFRLN 440
Query: 443 PLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAA 502
C SP++ DFDGD ++ ++PQ+ ++ EL EL + KQ+++ QS + ++ + QDSLTA
Sbjct: 441 LSCVSPYNADFDGDEMNLHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTAL 500
Query: 503 HLL-MEDSVLLSHLQMQ----------------QLQMFCPHRFL-------SPDIFKISK 538
L + DS MQ +L M F S +I KI
Sbjct: 501 RLFTLRDSFFDRRETMQLLYSVNINNYEFTDSSKLIMTHDDSFXNNLHTEESSNIMKILN 560
Query: 539 -------DSVWSGKQLFSMLLP-------------PDFEYTFPSKDVYISGGKLIS---- 574
+W+GKQ+ S +LP D E S V I G+++S
Sbjct: 561 FPAISYPKKLWTGKQILSYILPNTIYNGKSNEHNEEDLENVEDSY-VIIRNGEILSGIID 619
Query: 575 --AEGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWL-SVRGMTVSLSDLYLA 630
A GS+ +G L + + D+V F AQ+++ + ++ ++ + D
Sbjct: 620 KKAVGST-----QGGLIHIIANDFGPDRVTCFFDDAQKMMNLYFATINAFSIGIGD---- 670
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ 690
+ + K M ++ + A++ N +++V + N L S + + ++Y
Sbjct: 671 --AIADKETMSQVQRSIETAKEQVN--EIIVKAQKNKLERLPGMSMRESFESQ-VNYILN 725
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
+ +S AS A K S N++ M AGSKG+ + + Q + CLG Q+
Sbjct: 726 KPRDISGAS--------------ASKSLSFCNNMRTMVLAGSKGSFINISQVTACLGQQN 771
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
R P + + D + ++ + VENS++ G+ P E F H++ R
Sbjct: 772 VEGK---RIPFGFNYRSLPHFSKADYSGKSRGF-----VENSYVKGITPEEFFFHAMGGR 823
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ M D D +VR A G I Q+ Y +G
Sbjct: 824 EGLIDTAIKTAETGYIQRRLVKAMEDATVTLDRSVRGADG-FIYQYEYGEDG 874
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 155/584 (26%), Positives = 270/584 (46%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD V NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRLDLRYLKKSGDHHLELGYKVERHLNDGDFVFFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPSKD-VYISGGKLISAE-GSS 579
+W+GKQ+F++++P + P V I G+L+S
Sbjct: 503 --PRPLWTGKQVFNLIIPKQINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL + ++ + D + +
Sbjct: 561 TLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGD------TIADAA 614
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 615 TMEKINETISKAKNEV--KELIKAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P + D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPFGFNDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
Length = 863
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 155/568 (27%), Positives = 264/568 (46%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 151 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEH 210
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 211 PGAKYVIRDSG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 266
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 267 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSP 325
Query: 486 QSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + DS + M L + P + +W+G
Sbjct: 326 QSNKPVMGIVQDTLCGIRKMTLRDSFIEYDQVMNMLYWIPTWDGVIPPPAVMKPKPLWTG 385
Query: 545 KQLFSMLLPP-------DFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQL SM +P + + P+ + + + G + + G L +++
Sbjct: 386 KQLLSMAIPKGIHLQRLESNLSCPNDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMRE 445
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V L++ Q+V+ WL G ++ + D S + M + + EA+
Sbjct: 446 KGPQVCAQLFSNIQKVVNYWLLHNGFSIGIGDTIADSDT------MKTVTTTIEEAK--A 497
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q++++++ N L + E +L+ S+E S L+QA A + +++L
Sbjct: 498 KVQEIILNAQRNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKDL- 549
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 550 -------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFTKD 599
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 600 DYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 654
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 655 EDIMVHYDGTTRNSLGD-IIQFVYGEDG 681
>gi|332157774|ref|YP_004423053.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
gi|331033237|gb|AEC51049.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
Length = 906
Score = 184 bits (466), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 159/596 (26%), Positives = 274/596 (45%), Gaps = 91/596 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR + R V++ DP I + E+G+P ++A L + E++ +N E+L + ++ G
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMILNGPDKYPG 380
Query: 378 ELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV G RIR +++ +++G + R L DGDIVL NR PS+H S++A
Sbjct: 381 ANYVIDPEGR-RIRIMESNKENLARMIDIGWTVERHLVDGDIVLFNRQPSLHRMSIMAHR 439
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +++ + G
Sbjct: 440 VRVMPYKTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHILSPRYGG 498
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQ 546
++ QD ++ +LL + + +++Q+ MF PD + + +WSGK
Sbjct: 499 PIIGGIQDHISGGYLLTREGAYFTREEVEQMLMFAGLDIKELPEPDKYDENGRPLWSGKT 558
Query: 547 LFSMLLPPDF-----------------------EYTFPSKD----------VYISGGKLI 573
+FS+LLP D E P + VYI GKL+
Sbjct: 559 IFSLLLPDDLTVWYRNKLCDEPERCEALERLIEEKLMPDPEEVRKLAYDGFVYIQNGKLL 618
Query: 574 SA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T + D L
Sbjct: 619 SGAIDKKAYGRE-DGIILDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTGIDDEDLP 677
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYE 688
+ R + EI +REA++ + L+ A L G+ L + E
Sbjct: 678 EEAKDR---IREI---IREAEE-----------RVEKLIEAYKRGELEPLPGKTLEETLE 720
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ A L++A +A +A KY DN + M K G++G +L + Q + LG
Sbjct: 721 SKIMAVLAEARDNA--------GAVAEKYLGMDNHTVIMAKTGARGKILNITQMAALLGQ 772
Query: 749 QHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
Q +R + + GD A+ + V NS+ +GL+P E F H++
Sbjct: 773 QSIRGKRLYRG---FRGRVLSHFKPGDLGARARGF-----VVNSYKSGLSPQEYFFHAMG 824
Query: 809 SRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 825 GRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-VIVQFRYGEDGV 878
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S +E+ V + R+G+ +P C +CGAK
Sbjct: 7 VIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAK 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIK 107
>gi|397135850|gb|AFO11420.1| RNA polymerase I, partial [Saccharomycodes ludwigii]
Length = 871
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 176/652 (26%), Positives = 295/652 (45%), Gaps = 82/652 (12%)
Query: 272 HLVQDCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRND 323
H++QD K+ + H+ D A + QK K+I I++ ++GKR D
Sbjct: 100 HVIQDIEKLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRNNLMGKRVD 159
Query: 324 DCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-GELYVC 382
R V++GDPN++L ++G+P +A L E + +N +RL+ + E G YV
Sbjct: 160 FSGRTVISGDPNLELDQVGVPLSIARTLTYPEIVTPYNIDRLTQLVRNGPNEHPGAKYVI 219
Query: 383 RKGGLVRIRRIDALELGDI-------IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
R G RI + GDI + R + D D VL NR PS+H S++A VKV+P
Sbjct: 220 RDNG-TRIDLRYSKRTGDIQLQYGWKVERHIVDNDPVLFNRQPSLHKMSMMAHRVKVMPY 278
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++ QS + + +
Sbjct: 279 STF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIV 337
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFSMLLPP 554
QD+L L S + + Q+ + + P + P I +W+GKQ+ SM +P
Sbjct: 338 QDTLAGVRKLTLKSTFIEYDQVLNMLYWIPEWDGIVPPPTIIKPKPLWTGKQVLSMAIPS 397
Query: 555 --------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDF 603
D KD + I G + + G L + + V
Sbjct: 398 GIHLQRFDDGTTMLSPKDNGILIIDGKIMFGVVDKKTVGSSSGGLIHVVTREKGPYVCAS 457
Query: 604 LYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVD 662
L+ Q+V+ W G ++ + D + + + M EI + A+ +++ +
Sbjct: 458 LFGNIQKVVNFWFLHNGFSIGIGD------TIADEKTMREITESIAVAKQKV--EEVTKE 509
Query: 663 SHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDN 722
+ N L++AK + R S+E L++A A + ++++L N
Sbjct: 510 AQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRSAEVNLKDL--------N 554
Query: 723 SLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAWNRLRAGDN 776
++ M AGSKG+ + + Q S C+G Q ++F F PH D
Sbjct: 555 NVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPH---------FSKDDY 605
Query: 777 TECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRD 834
+ +K + VENS+L GL P E F H++ R+ G + RRL+ + D
Sbjct: 606 SPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALED 660
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
+ YDGT RN+ GN I+QF Y +G I Q + ++S S+AA+
Sbjct: 661 IMVHYDGTTRNSLGN-IIQFIYGEDGID--ASHIEKQSIDTISG---SDAAF 706
>gi|13274160|emb|CAC33863.1| RNA polymerase II largest subunit [Pleistophora sp. LS]
Length = 897
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 227/913 (24%), Positives = 378/913 (41%), Gaps = 117/913 (12%)
Query: 74 GFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK----ERQKGAGSSRKEQPRVCKYCVR 129
G I+ + H ++ I K+L S+C C I+ R + S+ + +C
Sbjct: 1 GHIELCKPVFHIGYIGRIKKILESVCFYCSRIKNGDSNTRSLNSAWSKNKSKSLCDSGCG 60
Query: 130 NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKP 189
+ + R + + + +V EK+++ ++ D + FD SV
Sbjct: 61 SKQPHFKREGMNIFTTIDENR---VVLSGEKVAEIFARITDGDCKALGFD------SVNA 111
Query: 190 NRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFLKCFPVTPNNH--RVTEVPHAFSHEK 246
+ L V + PSI E F+ ++D K + +N R E A +H
Sbjct: 112 HPSSLLISSVLVVPPACRPSISLEGFLRAEDDLTHKLSDIIKSNKTLRKNEAEGAPAHVI 171
Query: 247 KLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISN 306
+ + H+ +D E++ Q K + SSR E R + N+
Sbjct: 172 REYEQLLQFHVNTYMD-----TEIAGQPQALQKSGRPIKSISSRIKGKEGRIRGNL---- 222
Query: 307 SSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS 366
+GKR D R V+T +PNI L E+G+P ++A E++NS+N RLS
Sbjct: 223 -----------MGKRVDFSARSVITAEPNIDLDELGVPREIAVIETFPEKVNSYNIIRLS 271
Query: 367 VCISFRLLE-KGELYVCRKGGL---VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ + G YV R G+ +R R L++G + R + DGD VL NR PS+H
Sbjct: 272 ELVKRGPAQYPGANYVIRGDGMKIDLRFTRSVELQIGWTVERHMVDGDYVLFNRQPSLHK 331
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ V+V+ S +N +P++ DFDGD ++ ++PQ+ VEL L + +
Sbjct: 332 MSMMCHRVRVMEGKSF-RLNLSVTTPYNADFDGDEMNLHMPQSYITAVELRRLTHVPLHI 390
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF------CPHRFLSPDIFKI 536
++ QS + ++ + QD+L +++ DS+ + L C L P
Sbjct: 391 LSPQSNKPIMGIVQDTLVGVYIMSGDSIFIEESTTHNLMYTVDIDSKCTPAILRP----- 445
Query: 537 SKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGN-LFQYLIKR 595
+ +++GKQLFSM+LPP Y + ++ I G LI S + N L L
Sbjct: 446 --ERIYTGKQLFSMVLPPTLIYC--TDNIKIVDGVLIKGVVSKKVVGSVRNSLIHILYLD 501
Query: 596 YRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
Y KV L F Q V+ +LS G + + D +A S KI + L++A D+
Sbjct: 502 YGAKVALSFFNNIQRVVTAFLSSYGFSCGIGDT-IADFDTSMKINEE-----LKDAVDSV 555
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQN 712
N L+ +D + R G L ++E L++A +
Sbjct: 556 N----------GLLLEGRDRK-LRRRPGLSLRETFESSVMQILNKARDTS--------GT 596
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
+A K S DN+L M AGSKG+ + + Q + C+G Q ++C + R
Sbjct: 597 VAQKSLSSDNNLRTMVLAGSKGSFINISQVTACVGQQTVEG-------RRIACGYYYHKR 649
Query: 773 A------GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + A+ + V NS+L+GLNP E + H++ R+ G +
Sbjct: 650 TLPHFSRDDLSPRARGF-----VVNSYLSGLNPDEFYFHAMGGREGLIDTACKTAETGYM 704
Query: 825 TRRLMFFMRDLCTAYDGT------VRNAYGNQIVQFSYNIEGTS-----TPTGEIGDQPV 873
RRL+ M +L YDG VR YG+ + NI G P GE D +
Sbjct: 705 QRRLIKAMENLRVEYDGNVGDGGIVRFGYGDGNDGWDANISGECRGVQYNPIGEYIDAYI 764
Query: 874 GSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRR 933
S + L ++ T P +N+K VL + +F S+K +
Sbjct: 765 QCKSIEEEMKCERQTLSASSTIKCTMP-INIKRVLSTAMRFDTVPANYRIFFSSKRALIK 823
Query: 934 HGFEYGALEVKNH 946
+ +Y +++ H
Sbjct: 824 NMLKYLDMDIIIH 836
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 154/577 (26%), Positives = 268/577 (46%), Gaps = 77/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + E
Sbjct: 346 LMGKRVDFSARTVITGDPNLSLDELGVPRTIAKTLTYPETVTPYNIYQLQELVRNGPDEH 405
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L G + R + DGD+V+ NR PS+H S+
Sbjct: 406 PGAKYIIRDTG----ERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSM 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ E+ + +Q+++
Sbjct: 462 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEIAMVPRQIVSP 520
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L LS + + ++ P+ + P + +W+G
Sbjct: 521 QSNKPVMGIVQDTLAGVRKFSLRDNFLSRDVVMNIMLWVPNWDGVVPPPVILKPKPLWTG 580
Query: 545 KQLFSMLLPPDFE---------YTFPS-KDVYISGGKLI-SAEGSSWLRDYEGNLFQYLI 593
KQ+ S+++P Y P+ K + I G ++ + +G L +
Sbjct: 581 KQILSLVIPKGINLTRDDDKQTYINPNDKGMLIENGDIVYGVVDKKTVGASQGGLVHTIW 640
Query: 594 KRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
K +V F Q V+ WL G ++ + D + + M +I +++A+
Sbjct: 641 KEKGPEVCKSFFNGIQRVVNFWLLHNGFSIGIGD------TIADLATMKDITRTVKDARR 694
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+ + D+ N L E +L+ ++E + S L+QA +A +
Sbjct: 695 QVT--ECIKDAQQNRL----KPEPGMTLRE---TFEAKVSRILNQARDNAGR-------- 737
Query: 713 LAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSC 765
+ ++ KD N++ M +GSKG+ + + Q S C+G Q P F++ PH
Sbjct: 738 -SAEHSLKDSNNVKQMVASGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPH---- 792
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D++ ++ +I ENS+L GL P E F H++ R+ G
Sbjct: 793 -----FPKDDDSPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 842
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M D+ YDGTVRNA G+ IVQF+Y +G
Sbjct: 843 IQRRLVKAMEDVMVRYDGTVRNAMGD-IVQFAYGEDG 878
Score = 47.8 bits (112), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEI------------GAVSEVTNPRLGLPNPTNECS 59
VP + + GI + E +SV +I V+ + +PRLG + +C
Sbjct: 11 VPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDETGLRPRVAGLLDPRLGTIDRQFKCQ 70
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+CG + C GHFG I+ + H FL+ I K+L +C C ++
Sbjct: 71 TCG-ETMAECPGHFGHIELAKPVFHIGFLTKIKKILECVCWNCGKLK 116
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 173/636 (27%), Positives = 285/636 (44%), Gaps = 88/636 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L + + Q+ + + P +P I K
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILK--P 568
Query: 539 DSVWSGKQLFSMLLPPDFE---------YTFPSKD--VYISGGKLISAEGSSWLRDYEGN 587
+WSGKQL SM +P Y P + + I G + + G
Sbjct: 569 KPLWSGKQLLSMAIPSGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V L+ Q+V+ WL G ++ + D +A R+I D I
Sbjct: 629 LIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIGDT-IADEKTMREI-TDAIALA 686
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
++ ++ Q L++AK + R S+E L++A A +
Sbjct: 687 KKKVEEVTKEAQAN-------LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGRSA 733
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
++++L N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 734 EVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLP 785
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 786 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G I Q + ++
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGEDGMD--AAHIEKQSIDTIPG 888
Query: 879 CAIS-EAAYSALDQPISLLETSPLLNLKNVLECGSK 913
++ E Y I LL + L+ N+LE G++
Sbjct: 889 SDLAFEKRYR-----IDLLNPNYALD-PNLLESGTE 918
Score = 44.7 bits (104), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H F+S I K+ +C
Sbjct: 50 VGGLNDPRLGSIDRNFKCQTCG-EGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCM 108
Query: 101 KC 102
C
Sbjct: 109 HC 110
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 173/636 (27%), Positives = 285/636 (44%), Gaps = 88/636 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L + + Q+ + + P +P I K
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILK--P 568
Query: 539 DSVWSGKQLFSMLLPPDFE---------YTFPSKD--VYISGGKLISAEGSSWLRDYEGN 587
+WSGKQL SM +P Y P + + I G + + G
Sbjct: 569 KPLWSGKQLLSMAIPSGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V L+ Q+V+ WL G ++ + D +A R+I D I
Sbjct: 629 LIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIGDT-IADEKTMREI-TDAIALA 686
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
++ ++ Q L++AK + R S+E L++A A +
Sbjct: 687 KKKVEEVTKEAQAN-------LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGRSA 733
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
++++L N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 734 EVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLP 785
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 786 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G I Q + ++
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGEDGMD--AAHIEKQSIDTIPG 888
Query: 879 CAIS-EAAYSALDQPISLLETSPLLNLKNVLECGSK 913
++ E Y I LL + L+ N+LE G++
Sbjct: 889 SDLAFEKRYR-----IDLLNPNYALD-PNLLESGTE 918
Score = 44.7 bits (104), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H F+S I K+ +C
Sbjct: 50 VGGLNDPRLGSIDRNFKCQTCG-EGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCM 108
Query: 101 KC 102
C
Sbjct: 109 HC 110
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 164/582 (28%), Positives = 270/582 (46%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R+ G RID + GDI + R +TD D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRESG----DRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L + + Q+ + + P +P I K
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPV- 569
Query: 539 DSVWSGKQLFSMLLPP-------DFEYTFPS-KD---VYISGGKLISAEGSSWLRDYEGN 587
+WSGKQ+ SM +P D TF S KD + I G + + G
Sbjct: 570 -PLWSGKQVLSMAIPNGIHLQRFDDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + ++ L++ Q+V+ WL G ++ + D +A R+I + I
Sbjct: 629 LIHVVTREKGPEICARLFSNIQKVVNYWLLHNGFSIGIGDT-IADEKTMREI-TEAIAVA 686
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
++ +D Q L++AK + R S+E L++A A +
Sbjct: 687 KKKVEDVTKEAQAN-------LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGRSA 733
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
++++L N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 734 EVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLP 785
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 786 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN ++QF Y +G
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGEDG 872
Score = 47.8 bits (112), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
+ + +PRLG + +C +CG + C GHFG I+ + H FLS I K+ S+C
Sbjct: 50 IGGLNDPRLGSIDRNYKCQTCG-EGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCM 108
Query: 101 KC 102
C
Sbjct: 109 HC 110
>gi|327242119|gb|AEA40838.1| RNA polymerase II largest subunit [Trichomonas gallinae]
Length = 1019
Score = 183 bits (465), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 163/582 (28%), Positives = 267/582 (45%), Gaps = 85/582 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR+D R V++ DP+I + ++G+P +A+ L E + + N + L S+ + G
Sbjct: 275 GKRDDFSARSVISPDPSISIDQVGVPEDLAKILTFPEIVTTTNQKWLESIVMKGHDDIGG 334
Query: 378 ELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
YV G AL G I+ R + D DIV+ NR PS+H S++
Sbjct: 335 ANYVTNDHGTKTDLAFCNDLSTIALSPGYIVDRHIRDNDIVIFNRQPSLHKMSMMGHRAL 394
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
++P + +N +P++ DFDGD ++ ++PQ+ AR E+ ++A+ KQ+I+ Q+ R +
Sbjct: 395 LMP-ARTFRLNLCDTTPYNADFDGDEMNLHVPQSQAARAEVRHIMAVPKQIISPQANRPV 453
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR----FLSPDIFKISKDSVWSGKQL 547
+ L QD+L LL + L+ Q+ L M+ P P I K + +WSGKQ+
Sbjct: 454 IGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPVQ--LWSGKQV 511
Query: 548 FSMLLPP-------------DFEYTFPSKD--VYISGGKLISA--EGSSWLRDYEGNLFQ 590
FS+ LP D + P+ D V I G L++ + +S R EG+L
Sbjct: 512 FSLFLPKINYDHFSNGASDDDKKSWMPANDTRVIIRDGHLLAGLLDKTSCARS-EGSLTH 570
Query: 591 YLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+I Y D DFL Q ++ WL RG ++ L D + + ++D++ + E
Sbjct: 571 VVINSYNTDIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVP------QSVLDQVEEKINE 624
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL-SYEKQRSAALSQASVDAFKHVFW 708
+D + +A+ + R ++ S+E + ++AL+Q DA+K +
Sbjct: 625 VEDNVK----------GVIRTAQSGKLERRPGMTYIQSFEAEVNSALNQILGDAYKLIQK 674
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
DI+ +DNS + M AGSKG + Q + Q+
Sbjct: 675 DIR--------RDNSFIEMLTAGSKGANFNVTQVIGVVAQQN---------------IEG 711
Query: 769 NRLRAGDNTECAKSY-------IPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA--- 818
R++ G N Y IP +S++ GL P E H++ R + D A
Sbjct: 712 KRVKFGFNGRTLPHYQKHEYGLIPRGFCRHSYIEGLTPPEFLFHAMGGR-TGIIDTACKT 770
Query: 819 DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M AYDGTVRN+ N++VQF Y +G
Sbjct: 771 SDTGYIQRRLVKSMESHHVAYDGTVRNSL-NEVVQFVYGGDG 811
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 159/601 (26%), Positives = 271/601 (45%), Gaps = 108/601 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ L E + +N ++L ++
Sbjct: 344 IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRG 403
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 404 DTQYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLH 459
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +Q
Sbjct: 460 KMSMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQ 518
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
LI Q+ + ++ + QD+L A ++ + + + M L M+ P + P I K
Sbjct: 519 LITPQANKPVMGIVQDTLCAVRMMTKRDIFIDWSFMMDLLMYLPTWDGKVPQPAILK--P 576
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQ+FS+++P PD E P K V I G+L++ S
Sbjct: 577 KPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDAGPYKWISPGDTKVLIEHGELLTGIVCS 636
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ GNL + ++ Y+ Q V+ WL G T+ + D
Sbjct: 637 KTVGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGD----------- 685
Query: 638 ILMDEIFYGLREAQDTC-NFQQLMVD----SHMNFLMSAKDSESTRSLQ---GEHLSYEK 689
+ D+ Y R+ QDT +Q +VD +H + L + ++ + + L+ +
Sbjct: 686 TIADQETY--RDIQDTIRKAKQDVVDIIEKAHNDDLEPTPGNTLRQTFENKVNQILNDAR 743
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ 749
R+ + +Q S+ F N+ +M +GSKG+ + + Q C+G Q
Sbjct: 744 DRTGSSAQKSLSEF------------------NNFKSMVVSGSKGSKINISQVIACVGQQ 785
Query: 750 H---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLE 801
+ P FR PH + Y P + VENS+L GL P E
Sbjct: 786 NVEGKRIPFGFRHRTLPHFIK----------------DDYGPESKGFVENSYLAGLTPSE 829
Query: 802 CFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIE 859
F H++ R+ G + RRL+ M + YDGTVRN+ Q+VQ Y +
Sbjct: 830 FFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA-QMVQLRYGED 888
Query: 860 G 860
G
Sbjct: 889 G 889
>gi|119643649|gb|ABL85581.1| RNA polymerase II largest subunit [Platismatia glauca]
Length = 996
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 152/577 (26%), Positives = 268/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 269 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 328
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD + NR P H S+
Sbjct: 329 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHVVDGDYIXFNRQPXXHKESM 384
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 385 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 443
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + ++W+G
Sbjct: 444 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKKQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 503
Query: 545 KQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P E P D + ISGG+L+ + G ++I
Sbjct: 504 KQILSLVIPTGLNLLRGSEEGLSPVNDDGLLISGGELMYGLLNKKSVGASGGGVIHIIFN 563
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D H+ +++ ++
Sbjct: 564 EKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIENA 610
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V + SA +++ SL G ++ ++E + S AL++A DA ++
Sbjct: 611 VNEQKAEV---LEITRSATENQ-LDSLPGMNVRETFESKVSKALNKARDDAGTVTENSLK 666
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+ N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 667 DF--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 714
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 715 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 764
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 765 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 800
>gi|119643674|gb|ABL85582.1| RNA polymerase II largest subunit [Punctelia hypoleucites]
Length = 1004
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 155/588 (26%), Positives = 254/588 (43%), Gaps = 97/588 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 276 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 335
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 336 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 391
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL L + +++
Sbjct: 392 MGHRVRVMPYSTF-RLNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCMVPLNIVSP 450
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P I W+G
Sbjct: 451 QRNSPLMGIIQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPQPAIIKPTPRWTG 510
Query: 545 KQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGN-LFQYLIKRYR------ 597
KQ+ SM+LPP + + G + + L EGN +F L K+Y
Sbjct: 511 KQMISMVLPPALNL----ERLDAKGEDPFTPVNDTGLIVLEGNVMFGLLSKKYVGTSAGG 566
Query: 598 -----------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC--------SRKI 638
+ L F AQ V+ WL G ++ + D + ++K
Sbjct: 567 IIHTIYNELGWETALAFFNGAQTVVNYWLLHNGFSIGIGDTVPDPETVQKIQDAVDTKKA 626
Query: 639 LMDEI---FYGLR-EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
+D I G+R EA N +Q MN L A+D
Sbjct: 627 EVDAISKLAQGMRLEASPGMNIRQTFESKVMNSLNQARDQAGA----------------- 669
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
A+ D+ K + N+ + M +AGSKG+ + + Q + +G Q A
Sbjct: 670 ---ATEDSLKDL---------------NNAITMARAGSKGSTINIAQMTAIVGQQ---AV 708
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R P + D + ++ + VENS+L GL P E F H++ R+
Sbjct: 709 EGKRIPFGFKYRSLPHFTKDDYSAPSRGF-----VENSYLRGLTPTEFFFHAMAGREGLI 763
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YD TVR++ GN +VQF Y +G
Sbjct: 764 DTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-VVQFIYGEDG 810
>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
Length = 1651
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 158/591 (26%), Positives = 268/591 (45%), Gaps = 91/591 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L I +
Sbjct: 263 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIARTLTYPEVVTPYNINKLGTLIDNG 322
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R + DGD++L NR PS+
Sbjct: 323 PDVHPGARYVIRSTG----ERIDLRHHKGGGGRNFLQYGWKVERHIQDGDVILFNRQPSL 378
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL EL +
Sbjct: 379 HKESMMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELKELCLVPL 437
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + L+ Q+ + M+ P P IFK
Sbjct: 438 NIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNIMMWVPDWDGVIPQPAIFK-- 495
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWL 581
W+GKQ+ SM+LP KD +++ GG+L+ S +
Sbjct: 496 PRPRWTGKQIISMVLPAGLNLLRLDKDKAPLGDRFSPPADGGLFVHGGELMFGMFSKKSV 555
Query: 582 RDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y +V L+F AQ V+ WL G ++ + D + + + +
Sbjct: 556 GAAGGGIIHTIFNEYGHEVALNFFNGAQTVVNYWLLHNGFSIGIGDTIPDAGTIEK---I 612
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ +E DT SA D+ + L G ++ ++E + S AL+ A
Sbjct: 613 EQAVRVRKEEVDTIT-------------ASATDN-TLEPLPGMNVRETFESKVSRALNNA 658
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---P 754
+A + KD N+ + M ++GSKG+ + + Q +G Q P
Sbjct: 659 RDEA---------GTVTEKSLKDCNNGVQMARSGSKGSTINISQMMAIVGQQSVEGKRIP 709
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 710 FGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGRE 755
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 756 GLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFLYGEDG 805
>gi|355570729|ref|ZP_09041999.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
gi|354826011|gb|EHF10227.1| DNA-directed RNA polymerase subunit A' [Methanolinea tarda NOBI-1]
Length = 879
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 223/900 (24%), Positives = 371/900 (41%), Gaps = 164/900 (18%)
Query: 49 LGLPNPTNECSSCGAKDRKA--CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI- 105
LG+ +P C +C D+KA C GHFG I+ ++H + I KLL C C +
Sbjct: 50 LGVIDPGLRCKTC---DQKASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCSRLL 106
Query: 106 --RKERQKGAGS---------SRKE--QPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTA 152
+E +K G+ S K+ + RVC YC + K++ + + +
Sbjct: 107 LSPEEIEKVVGTEDDLTGDVLSEKDIKKERVCPYCGEQ--------QLKINFEKPTTFSE 158
Query: 153 IIVE----IDEKLSKKN-----KKLPDD---YWGFIPFDAQQEENSVKPNRKVLSCKQVS 200
II+E I+ KL+ + +K+PD+ + G P + +P VL+ V
Sbjct: 159 IIIEDGKKIEHKLTPADIRARLEKIPDEDLRHLGINP-------DVARPEWTVLTVLPVP 211
Query: 201 YLLKDVDPSI-REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKK 259
+ + PSI E S+D K + N R E A + + + D W
Sbjct: 212 PVT--MRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQDAGA-PQLIIEDLWELLQYH 268
Query: 260 MVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLG 319
+ Y L + V C +R S + + + G + + G
Sbjct: 269 VTTY------LDNEVAGC---------PPARHRSGRPLKTLSQRLKGKDG--RFRGSLSG 311
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--- 376
KR + R V++ DPN+ + E+GIP VA + + + +N E L + + +
Sbjct: 312 KRVNFSARTVISPDPNLSVMEVGIPLAVANEMTLPVTVTPYNIEELRQMVRNGPVRRSLS 371
Query: 377 ---GELYVCR---------KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G YV R +G L + + LE G ++ R + DGDIVL NR PS+H S
Sbjct: 372 QPCGANYVIRPDKRRMRLAEGNLETV--AEMLEPGWVVERQIRDGDIVLFNRQPSLHRMS 429
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++A VKV+ +NP C P++ DFDGD ++ +IPQ AR E LVA+++ +++
Sbjct: 430 IMAHRVKVMD-GRTFRLNPAVCPPYNADFDGDEMNLHIPQTEEARAEAAILVAVEENILS 488
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSV--W 542
+ G ++ D ++ +L L H + + L + + KD V W
Sbjct: 489 PRFGGPIIGGIHDHVSGIFMLTNQ--LKWHTKQEALYLLKNIEIEHLPPPGMVKDGVPYW 546
Query: 543 SGKQLFSMLLPPDFEYTFPS---------------KDVYISGGKLISAEGSSWLRD---- 583
S KQ+FS++LP + F + +D Y+ ++I S D
Sbjct: 547 SNKQIFSIVLPKELNMVFRASSCQNCETCKRQECDRDAYV---RIIDGNLESGTIDKKAI 603
Query: 584 --YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
++G + +I++Y + DF+ + + + G + + D L+ K
Sbjct: 604 GAFDGQIVNRIIRQYGMKRAADFIDDITHLAIRAIMMNGFSFGIDDEDLS------KTEY 657
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQ-GEHLSYEKQRSAALSQAS 699
+I LR A + + + M + E T +Q + L + R+
Sbjct: 658 GQIEEVLRNAITDVQRRIRIYEDGQLEAMPGRTPEETLEMQIMQVLGKARDRTG------ 711
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR- 758
+A ++ NS + M +G++G++L L Q + C+G Q R
Sbjct: 712 ------------EIAGRHLGLGNSAVVMAVSGARGSMLNLTQMAGCVGQQSVRGERIMRG 759
Query: 759 -----FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
PH R GD A +I +S+ +GLNP E F H++ R+
Sbjct: 760 YDDRTLPH---------FRKGDRGAAAHGFI-----SHSYKSGLNPTEFFFHAIGGRE-G 804
Query: 814 FSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
D A G L RR++ ++DL AYDGTVR G +I+QF Y +GT GD
Sbjct: 805 LVDTAVRTSQSGYLQRRMINALQDLKVAYDGTVRTT-GGRIIQFCYGEDGTDPMKSSFGD 863
>gi|397135936|gb|AFO11463.1| RNA polymerase I, partial [Candida santjacobensis]
Length = 873
Score = 183 bits (465), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 157/570 (27%), Positives = 266/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L ++G+P +A L E + +N +RL+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIQRLTQLVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID AL+ G + R + D D VL NR PS+H S+
Sbjct: 213 PGAKYIIRDTG----ERIDLRYHKRVGDIALQYGWKVERHIVDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N +P++ DFDGD ++ ++PQ+ R EL++L + Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + PH + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTKRDTFIEFDQVMNILFWVPHWDGVVPQPAILKPKPLWTG 387
Query: 545 KQLFSMLLPPD-FEYTFPSKDVYIS---GGKLIS-AEGSSWLRDYE------GNLFQYLI 593
KQ+ S+ +P F F + IS G LIS E + D + G L ++
Sbjct: 388 KQMASLCIPKGIFLQRFDEGNPLISPKDNGMLISKGEIMYGVVDKKTVGATGGGLIHTIM 447
Query: 594 KRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V F Q+V+ WL G ++ + D + + M +I + EA+
Sbjct: 448 REKGPQVCSSFFGNIQKVVNFWLLHNGFSIGIGD------TIADGATMRDIANTISEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++ + N L S + + R S+E+ S L+QA A + ++
Sbjct: 502 KV--QEIILQAQANTL-SPEPGMTLRE------SFEQNVSRVLNQARDTAGRSAEMSLKE 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M AGSKG+ + + S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVVAGSKGSFINISLMSACVGQQ---IVEGRRIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIXRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-VIQFIYGEDG 685
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 154/569 (27%), Positives = 268/569 (47%), Gaps = 63/569 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N ++L+ + E
Sbjct: 342 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNIQKLTELVRNGPNEH 401
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 402 PGAKYVIRDSG----DRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSM 457
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL ++ A+ Q+++
Sbjct: 458 MAHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICAVPLQIVSP 516
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 517 QSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMCFWIPNWDGVVPQPAILKPKPLWSG 576
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ SM +P D P S + ++G + + + G L +++
Sbjct: 577 KQVLSMCIPQGIFLQRLDGSLLSPKDSGMLIVNGEIMFGVVNKATVGSSAGGLIHTVMRE 636
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
KV L+ Q+V+ WL G ++ + D S + M I + A++
Sbjct: 637 KGPKVCAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSET------MKTITETIAIAKE-- 688
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q++++D+ N L+ A+ + R S+E++ S L++A A K +++
Sbjct: 689 KVQEVIMDAQKN-LLEAEPGMTVRE------SFEQKVSKLLNEARDSAGKSAETSLKD-- 739
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLRA 773
N++ M AGSKG+ + + Q S C+G Q ++F F +
Sbjct: 740 ------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADR----SLPHFTK 789
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFF 831
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 790 DDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKA 844
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 845 LEDIMVHYDGTTRNSLGD-VIQFIYGEDG 872
Score = 45.1 bits (105), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C ++D + C GHFG I+ + H F+S I K+ +C C
Sbjct: 53 LNDPRLGSIDRNFRCQTC-SEDMQECPGHFGHIELAKPVFHIGFVSRIKKVCECVCMNCG 111
Query: 104 TI 105
I
Sbjct: 112 KI 113
>gi|111278791|gb|ABH09093.1| RNA polymerase II largest subunit [Staurothele frustulenta]
Length = 1010
Score = 183 bits (464), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 162/597 (27%), Positives = 271/597 (45%), Gaps = 103/597 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L + ++
Sbjct: 265 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNG 324
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ G RID L+ G + R + DGD++L NR PS+
Sbjct: 325 PERHPGARYIIREQG----ERIDLRFHKNTNSITLKAGWKVERHIMDGDVILFNRQPSLX 380
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 381 XXXXXXXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 439
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 440 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 497
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D ++IS G+L+
Sbjct: 498 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFISDGQLMFGLFNKKSV 557
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D + S
Sbjct: 558 GTGSNGIIHTIFNEFGH------ETAMSFFNGAQTVINYWLLHNGFSIGIGDT-VPDVST 610
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
KI + + ++ V+ + + +E +L G ++ ++E + S
Sbjct: 611 VEKI------------KSEVDKKKAEVER----ITQSAVAEDLEALPGMNVRETFESKVS 654
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 655 AALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 705
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH A D+ A P VENS+L GL P E F H
Sbjct: 706 EGKRIPFGFKYRTLPH----------FAKDDYSAA----PKGFVENSYLRGLTPTEFFFH 751
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 752 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 807
>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
Length = 871
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 161/582 (27%), Positives = 266/582 (45%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIIDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ +Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L + + Q+ + + P P I K
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPKPTILK--P 381
Query: 539 DSVWSGKQLFSMLLPPDFE---------YTFPSKD--VYISGGKLISAEGSSWLRDYEGN 587
+WSGKQL SM +P Y P + + I G + + G
Sbjct: 382 KPLWSGKQLLSMAIPNGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 441
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V L+ Q+V+ WL G ++ + D + + + M EI
Sbjct: 442 LIHVVTREKGPQVCAKLFGNIQKVVNYWLLHNGFSIGIGD------TIADEKTMREITEA 495
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ A+ Q++ ++ N L++AK + R S+E L++A A +
Sbjct: 496 IALAKKRV--QEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRSA 546
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
++++L N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 547 ELNLRDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLP 598
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 599 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 644
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G
Sbjct: 645 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGEDG 685
>gi|424812808|ref|ZP_18238048.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
gi|339757030|gb|EGQ40613.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
Length = 823
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 156/562 (27%), Positives = 267/562 (47%), Gaps = 57/562 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR + R V++ DPNI + E+GIP QVA++L I +N N E+ + E
Sbjct: 284 LIGKRVNFSARTVISPDPNIGINEVGIPYQVAKKLTIPVEVNEQNLEQAREWVRNGSEEH 343
Query: 377 -GELYVCRKGGLVR---------IRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
G YV + G R + + E G + R L DGD VL NR PS+H S++
Sbjct: 344 CGANYVFQPNGQRRKITDENQEELAEEMSAEAGWKVERHLQDGDTVLFNRQPSLHRLSIL 403
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
A +KVLP + INP C+P++ DFDGD ++ ++PQ AR E EL+ + + + +
Sbjct: 404 AHEIKVLPYRTF-RINPNVCAPYNADFDGDEMNLHVPQTEEARAEAEELLKVQEHVKMPK 462
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQ-MQQLQMFCPHRFLSPDIFKISKDSVWSGK 545
+G ++ + QD ++ +LL ++ V LS Q L H PD + +G+
Sbjct: 463 TGGPIVGMLQDYVSGLYLLTQEGVELSREQAFNLLAEAGEHEAELPD------GDIVTGR 516
Query: 546 QLFSMLLPPDFEYTF---PSKDVYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RDKV 600
+L S+ +P D + T +V I G+L+ + L DY G + Q L Y DKV
Sbjct: 517 ELVSLFVPDDIDITINENEPNEVRIEDGQLVDGQLDDDALSDYGGEIIQQLKIHYGSDKV 576
Query: 601 LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLM 660
+FL + +LS RG ++S+ DL + S DEI + A D
Sbjct: 577 AEFLNRVSRIGAIYLSRRGFSISIDDLEIPDDST------DEIHGLIDGAVDDA------ 624
Query: 661 VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720
N ++ +++ ++ G+ L E+ R ++Q A ++F ++ ++ +
Sbjct: 625 -----NEVLDQYETDELEAITGKTL--EETREIRVTQ----ALNNIFTEVGDIISENVDS 673
Query: 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECA 780
++S M +G++G++ + + +G + R E + + + R G+ + +
Sbjct: 674 ESSAYIMADSGARGSMQNVTTMAGLMGQESVRDQRVNRGYKERTTSHFKR---GEVSPES 730
Query: 781 KSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN--ADLPGTLTRRLMFFMRDLCTA 838
K + V NS + G +PL+ F ++ R + + G + RR+ ++DL
Sbjct: 731 KGF-----VANSIMEGFDPLDMFFEQMSQRKALMDKSLRTKTSGYMYRRVSNSLQDLTVD 785
Query: 839 YDGTVRNAYGNQIVQFSYNIEG 860
YD TVRNA G +IVQF +G
Sbjct: 786 YDQTVRNAEG-EIVQFRAGEDG 806
>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
Length = 1016
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 151/571 (26%), Positives = 259/571 (45%), Gaps = 66/571 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P VA L E + +N +L + +
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIHKLHQLVKNGPNDH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRADG----ERIDLRHHKRAGEIPLQYGWKVERHIVDGDFIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+++L + ++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVPP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + +W+G
Sbjct: 450 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPRPLWTG 509
Query: 545 KQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P E P +D + ISGG+++ + G ++I
Sbjct: 510 KQILSLVMPVGLNLLRVSNEGFSPLRDDGLLISGGEIMYGLLNKKTVGASGGGVVHIIFN 569
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D + D G EA
Sbjct: 570 EKGPEAAMKFFNGAQTVVNYWLLHNGFSIGIGD-----------TIPDRATIGKIEA--A 616
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ + + + SL G ++ ++E + S AL+ A DA + ++
Sbjct: 617 VNKQK----DEVGVITKSATENELESLPGMNVRETFESKVSKALNNARDDAGRVTEESLK 672
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRL 771
+L N+ M ++GSKG+ + + Q + +G Q R P
Sbjct: 673 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGK---RIPFGFKYRTLPHF 721
Query: 772 RAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLM 829
D + ++ + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 722 TKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 776
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 777 KALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 150/577 (25%), Positives = 261/577 (45%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R+ G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRESG----ERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + L V LS Q+ + ++ P + P + W+G
Sbjct: 450 QRNGPLMGIVQDTLCGIYKLCRRDVFLSKEQVMNILLWIPDWDGILPQPAILKPRPKWTG 509
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISA--EGSSWLRDYEGNLFQYLI 593
KQ+ S+++P T + + +SGGKL+ S G +
Sbjct: 510 KQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSGIIHIIFN 569
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D + +++ +D
Sbjct: 570 EKGPEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGT-------------IKQIKDA 616
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ + + + + L G ++ ++E + S AL++A DA ++
Sbjct: 617 VNKQK----EDVAVITQSATANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 672
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 673 DL--------NNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 720
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 721 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 770
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 771 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
aggregatum]
Length = 1016
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 159/602 (26%), Positives = 270/602 (44%), Gaps = 76/602 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + ++G+P +A L E + +N RL + +E
Sbjct: 277 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPENVTPYNIARLQKYVQNGPMEH 336
Query: 377 -GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G ++ R L+ G + R L D D+V+ NR PS+H S++
Sbjct: 337 PGAKYVIRDNGERIDLRYSKVGRDIHLQPGYKVERHLMDDDVVIFNRQPSLHKMSMMGHR 396
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + KQ++ Q
Sbjct: 397 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETRAEIQELCMVPKQIVTPQKNG 455
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLF 548
+ + QD+L A LS + L M+ P P I +W+GKQ+
Sbjct: 456 PCMGIVQDTLCAIRKFTRRDCFLSKDMVMNLLMWVPDWDGTVPTPCIIKPIPLWTGKQMM 515
Query: 549 SMLLP-----------PDFEYTFPS---KDVYISGGKLISA------EGSSWLRDYEGNL 588
S+++P PD E + S VYI G+L++ GSS G +
Sbjct: 516 SLIIPRINMVGYHMAHPDDEKSDISPGDTKVYIEDGELLTGILCKKTVGSS----QNGII 571
Query: 589 FQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + F + Q ++ WL G ++ + D + + K M++I ++
Sbjct: 572 HITFNEHGPEAAKGFFNSCQLIVNYWLLHNGFSIGIGD------TIADKQTMEKINQSIQ 625
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE--HLSYEKQRSAALSQASVDAFKHV 706
A+ + +N +++ + L G LS+E + L++A A K
Sbjct: 626 SAK-----------AEVNKIIAKAQRDELAVLPGMTIRLSFEALVNKELNRARDMAGKS- 673
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
A + + N++ M AGSKG+ + + Q + C+G Q+ R P
Sbjct: 674 -------AERSLKEQNNVKQMVTAGSKGSFINISQMTGCVGQQNVEGK---RIPFGFKDR 723
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
+ D++ ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 724 SLPHFTKDDHSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYI 778
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEA 884
RRL+ M D+ YDGT+R++ G ++QF Y +G E +L + A+S+A
Sbjct: 779 QRRLVKAMEDVMVRYDGTIRDSLGT-VIQFCYGEDGMDGAKVE-----RQNLESLAMSDA 832
Query: 885 AY 886
+
Sbjct: 833 KF 834
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 220/938 (23%), Positives = 387/938 (41%), Gaps = 149/938 (15%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCV 128
C GHFGFI+ + H F+ KLL +C C + ++ + P V K
Sbjct: 2 CPGHFGFIELAKPMFHAGFMGMTLKLLRCVCYFCSRLL--------ITKVDDPGVQKILK 53
Query: 129 RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDE------------KLSKKNKKLPDDYWGFI 176
R ++ S + + +I E + K ++ K+ D+
Sbjct: 54 AVSKMESRAARLRIMSGLCTARKCLITESPDGGASTGCGHEQPKYKREGLKIRADF---- 109
Query: 177 PFDAQQEENSVKPNRKV-LSCKQVSYLLKDVDPSIREEFILSK-----DAPFLKCFPVTP 230
P D + + RK +S ++V + K + + E LS + L PV P
Sbjct: 110 PDDGADVDGAPANERKQNVSAEKVLSVFKRISDNDAELMGLSARWARPEWLILTLLPVPP 169
Query: 231 NNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIE----LSHLVQDCLKISKLH 284
+ R + + A + D+ T +L +V R++E +H + + + + + H
Sbjct: 170 PHVRTSIMMDATQRGE----DDLTHNLAVIVKNNTALRNLEGHGAPAHRLAEQIFLLQFH 225
Query: 285 --------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNI 336
L R R K+I ++ ++GKR D R V+T DPN+
Sbjct: 226 VATYMNNDLPGMPRAAQKSGRPLKSISQRLKGKEGRLRGNLMGKRVDFSARTVITPDPNL 285
Query: 337 KLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG------ELYVCRKGGL--- 387
+L ++G+P +A+ L E + ++N E + +L+E G Y+ R G
Sbjct: 286 RLDQVGVPFSIAKNLTFPETVTAYNIEEMQ-----QLVENGPDEYPDAKYIQRDDGYQVN 340
Query: 388 ---VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPL 444
VR R LE+G + R +T+GD ++ NR PS+H S++ +KV+P S+ +N
Sbjct: 341 LAYVRNRADVQLEIGYKVVRHITNGDFIVFNRQPSLHKMSIMGHRIKVMPYSTF-RLNLS 399
Query: 445 CCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHL 504
SP++ DFDGD ++ ++PQ R E+ EL+ + + +++ Q + ++ + QD+L L
Sbjct: 400 VTSPYNADFDGDEMNLHVPQTHATRAEVMELMMVPRCIVSPQGNKPVMGIVQDTLLGCML 459
Query: 505 LM-EDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLP---------- 553
D+ L + M L + P I + +W+GKQLFS+LLP
Sbjct: 460 FTYRDTFLRRDVTMSLLLHVEGWDGVIPPPAIIKPEPLWTGKQLFSLLLPDVNLVRYCNT 519
Query: 554 -PDFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI--KRYRDKVLDFLYAA 607
PD E T S V I GG+LI+ N ++ ++ ++ + A
Sbjct: 520 HPDDESTDISPGDTRVLIVGGELITGIVDKRTVGSAANGLIHVTWKEKGPERTCVLISAI 579
Query: 608 QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
Q ++ ++ +RG ++ + D +H+ D+++
Sbjct: 580 QVLVNHYVIMRGQSIGIGDTIADAHT----------------------------DANVRA 611
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGS-------- 719
++ +E T Q E + E + + ++ +++F+ + N A
Sbjct: 612 TITGAQAEVT---QLERRAQEGELTLLPGKSMMESFEVEVNKVLNGARDTSGSSAQLSLL 668
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTEC 779
K N++ M AGSKG+ + + Q C+G Q+ R + R D
Sbjct: 669 KSNNIKRMVSAGSKGSFINISQICACVGQQNVEGK---RISYGFRRRTLPHFRMDDLGPE 725
Query: 780 AKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCT 837
++ + VENS+L GL P E F H++ R+ G + RRL+ M D+
Sbjct: 726 SRGF-----VENSYLIGLRPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDVMV 780
Query: 838 AYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLE 897
YDGTVRN+ + ++QF Y +G E DQ + +L + S L
Sbjct: 781 KYDGTVRNSR-SSVIQFLYGEDGLDGALVE--DQKLDTLRSTNDSFTKRYHL-------- 829
Query: 898 TSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHG 935
T P L+L+ V++ + Q LG+RR G
Sbjct: 830 TEPDLHLQGVVQFSVLVAGGSQRY------PLGRRRRG 861
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1712
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 161/592 (27%), Positives = 273/592 (46%), Gaps = 93/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N RL + +
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNG 411
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G +V R G RID L+ G + R L DGD +L NR PS+
Sbjct: 412 PDVHPGARHVIRSSG----ERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSL 467
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L +
Sbjct: 468 HKESMMSHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPL 526
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 527 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILK-- 584
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
WSGKQ+ SM+LP P E P D V + GG+L+ S +
Sbjct: 585 PRPRWSGKQMISMVLPSGLNLLRIDKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTV 644
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y D + F AQ V+ WL G ++ + D +
Sbjct: 645 GASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLET------- 697
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQ 697
+++ ++ ++ VDS ++A +E+T +L G ++ ++E + S AL+
Sbjct: 698 ------IQKIENAVRVRKEEVDS-----ITASATENTLEALPGMNVRETFESKVSRALNN 746
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
A +A A + KD N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 747 ARDEA---------GTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRI 797
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + ++ + VENS+L GL P E F H++ R
Sbjct: 798 PFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGR 843
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + R+L+ + ++ YDGTVRN+ G+ IVQF Y +G
Sbjct: 844 EGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IVQFLYGEDG 894
Score = 47.4 bits (111), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 1025
Score = 183 bits (464), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 267/584 (45%), Gaps = 86/584 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+++ ++G+P +A+ L E + +N +RL + E
Sbjct: 280 LMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEH 339
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L++G + R L D D+V+ NR PS+H S+
Sbjct: 340 PGAKYVIRDSG----ERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLHKMSM 395
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+ S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + KQ+++
Sbjct: 396 MGHRVKVMDYSTF-RLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQIVSP 454
Query: 486 QSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
Q R ++ + QD+L A + + D+++ L M L + P + +WSG
Sbjct: 455 QGNRPIMGIVQDTLCAMIMFTKRDNLMKQDLVMDLLLKVPGWDGMIPPPCILKPQPLWSG 514
Query: 545 KQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISA-EGSSWLRDYEGNL 588
KQL+S+L+P PD E ++ S V + G L+S + G L
Sbjct: 515 KQLYSLLIPDGINCYTFLKEHPDLETSWSSPGDTRVVVENGVLLSGIVCKQTVGAVRGGL 574
Query: 589 FQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ + FL Q V+ +WL G ++ + D + + MD + +
Sbjct: 575 VHTIFNELGPEATKVFLGGTQRVINQWLVTNGFSIGIGDTITDAST------MDSVSKII 628
Query: 648 REAQDTCNFQQLM---VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
EA + Q++ ++ M L E ++E + L++A +A K
Sbjct: 629 SEAHRIVD--QIIKDCIEDKMKGLPGMTYKE----------TFENNINFELNKARENAGK 676
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR--- 758
V +++ N++ M +GSKG+ + + Q + +G Q+ P FR
Sbjct: 677 SVQAQLKDC--------NNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRDRT 728
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
PH D T ++ + VENS+L+GL P E + H++ R+
Sbjct: 729 LPH---------FTKDDYTPHSRGF-----VENSYLSGLTPQEFYFHAMGGREGLIDTAV 774
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G I++F+Y +G
Sbjct: 775 KTAETGYIQRRLVKALEDVMVHYDGTVRNSLG-AIIEFAYGHDG 817
>gi|123979324|gb|ABM81487.1| RNA polymerase II largest subunit [Cladonia stipitata]
Length = 984
Score = 183 bits (464), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 150/576 (26%), Positives = 262/576 (45%), Gaps = 75/576 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P VA L E + +N +L + +
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIHKLHQLVKNGPNDH 315
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 316 PGAKYVIRADG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSLHKESM 371
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 372 MGHRVRVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSS 430
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V ++ + + ++ P + P I +W+G
Sbjct: 431 QRNGPLMGIVQDTLCGTYKMCRRDVFMTKEAVMNILLWVPDWDGVIPQPAIIKPRPMWTG 490
Query: 545 KQLFSMLLPPDFEY----------TFPSKDVYISGGKLI------SAEGSSWLRDYEGNL 588
KQ+ S+++P Y + +I GG+L+ A G++ +G +
Sbjct: 491 KQILSLVIPAGLNYMKLDETEGFTALTDEGQFIHGGELMFGLLDKKAVGAA----TQGVI 546
Query: 589 FQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ D + F AQ V+ WL G ++ + D + +R
Sbjct: 547 HLIFNELGSDAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTINR------------ 594
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHV 706
+ N Q+ V+ SA+ +E SL G ++ ++E + S AL++A +A K
Sbjct: 595 -IKTVVNAQKQEVEE---ITQSAQLNE-LESLPGMNVRDTFESKVSNALNKAREEAGKVT 649
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
++++ N+ + M ++GSKG + + Q + +G Q R P
Sbjct: 650 EESLKDV--------NNAIQMARSGSKGTNINISQMTAVVGQQSVEGK---RIPFGFKYR 698
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
+ D + ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 699 SLPHFAKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 753
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 754 QRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 788
>gi|397135880|gb|AFO11435.1| RNA polymerase I, partial [Lodderomyces elongisporus]
Length = 872
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 154/570 (27%), Positives = 269/570 (47%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPSEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWRVERHLMDEDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P I +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAIIKPKPLWSG 387
Query: 545 KQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQ+ S+ +P +KD + + G + + G L ++
Sbjct: 388 KQMLSLAIPKGIHLQRFDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ V L+++ Q+V+ WL G ++ + D + + M +I ++EA+
Sbjct: 448 REKGPTVCAQLFSSIQKVVNFWLLHNGFSIGIGD------TIADAATMKDITKTIQEAK- 500
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + +++
Sbjct: 501 -AKVQEIILDAQHNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMSLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 685
>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
Length = 991
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 154/572 (26%), Positives = 265/572 (46%), Gaps = 80/572 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN++L E+G+P +A L ER+ +N L + +
Sbjct: 258 LMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAY 317
Query: 376 KGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L +R DA L+ G I+ R L DGD VL NR PS+H S+++ V
Sbjct: 318 PGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRV 377
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++P S+ +N P++ DFDGD ++ +IPQ+ R EL+++ + +Q+I+ + +
Sbjct: 378 KLMPYSTF-RLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPHANKP 436
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L L Q+Q + ++ P +P I K +W+GKQ+
Sbjct: 437 VMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGAVPTPAIIK--PKPLWTGKQI 494
Query: 548 FSMLLP--------PDFEYTFPSKD--VYISGGKLI------SAEGSSWLRDYEGNLFQY 591
S+++P PD + + P D + I G+++ G+S +G L
Sbjct: 495 LSLVIPRGINIHRAPDPKSSNPVFDDGMMIENGEIVFGIVEKKTVGAS-----QGGLIHV 549
Query: 592 LIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ + + + D Q V+ WL G ++ + D + S + +E
Sbjct: 550 VFREKGPEATRDLFTGIQMVVNFWLFHNGFSIGIGDAIAGPNVMS---------FITQEI 600
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
D +++ + + A + R S+E + L++A + ++ ++
Sbjct: 601 NDRKQQVTTIIEDAYHDRLKAMPGMTIRE------SFESKVERELNRARDTSGRYAQENL 654
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELS 764
+ +DN++ M AGSKG+ + + Q S+C+G Q P FR PH
Sbjct: 655 K--------EDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPH--- 703
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 704 ------FTKDDFSPEARGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 752
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
+ RRL+ + D+ YDGTVRN+ G+ ++QF
Sbjct: 753 YIQRRLVKALEDVMVCYDGTVRNSLGD-LLQF 783
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 182 bits (463), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 159/591 (26%), Positives = 258/591 (43%), Gaps = 104/591 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N +L+ + E
Sbjct: 353 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIAKLTKYVQNGPTEH 412
Query: 376 KGELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G +V R G L RR LE G + R L DGD ++ NR PS+H S++
Sbjct: 413 PGARFVVRSDGTRIDLRHSRRATGIQLEYGWKVERHLLDGDYIIFNRQPSLHKESMMGHR 472
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 473 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNG 531
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
L+ + QD+L + L V L+ ++ + ++ P P IFK W+GKQ
Sbjct: 532 PLMGIVQDTLAGVYKLCRRDVFLTKEEVMNIMLWVPDWDGIIPLPAIFK--PRPRWTGKQ 589
Query: 547 LFSMLLP-----------PDFEYTFPSKDVYISGGKL---------ISAEGSSWLRDYEG 586
+ SM++P PD ++ F + I G+L + A G +
Sbjct: 590 IISMVIPNIINIHMPSDQPDRDHPFKDDGLLIQQGELMFGLLMKKSVGAAGGGIVHLCYN 649
Query: 587 NLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L Y +DFL Q V+ WL G ++ + D
Sbjct: 650 ELGPY-------GAMDFLNGCQRVVNYWLLHNGHSIGIGDTI------------------ 684
Query: 647 LREAQDTCNFQQLMVDSHMN-------FLMSAKDSESTRSLQGEHL--SYEKQRSAALSQ 697
DT + ++ H+N L A + +L G ++ ++E + S AL++
Sbjct: 685 ----PDTITIE--LIQKHINDEKEEVRRLTQAATNNQLEALPGMNIRETFENKVSTALNK 738
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAP 754
A A +++L N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 739 ARDKAGTSTEKSLKDL--------NNAVTMARSGSKGSAINISQMTALVGQQIVEGKRIP 790
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 791 FGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGRE 836
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D YDGTVRN+ G+ I+QF Y +G
Sbjct: 837 GLIDTAVKTAETGYIQRRLVKALEDAEARYDGTVRNSLGD-IIQFVYGEDG 886
Score = 48.1 bits (113), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C ++ C GHFG I+ + HP F+ + KLL +C C
Sbjct: 55 LNDPLLGSVDRQFKCKTC-TENMTECPGHFGHIELSRPVFHPGFIRRVKKLLEMVCHNCS 113
Query: 104 TIRKER--QKGAGSSRKEQPRV 123
+ +R ++ A + R P+V
Sbjct: 114 KVLADREDEQYAAAMRIRDPKV 135
Score = 42.4 bits (98), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D R+ +++ +GI+A + L ++ G + HL ++ + ++
Sbjct: 1344 IDGVDTKRTSTNDLYQIVDVFGIEAARSALMQELTQVLAFDGSYVNHRHLALLVDVMTYR 1403
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + G+ + + + ++ F ++AA G +D+ +G + + G++
Sbjct: 1404 GSIAAVTRHGI-----NRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQM 1458
Query: 1249 PSVGTGGHFDII 1260
+GT GHFD++
Sbjct: 1459 APMGT-GHFDVL 1469
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 152/596 (25%), Positives = 270/596 (45%), Gaps = 98/596 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ + E + +N ++L ++
Sbjct: 342 IRGNLMGKRVDFSARTVITPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNVDKLQELVNRG 401
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 402 DSQYPGAKYIIRDNGA----RVDLRYHPRAADLLLQPGYRVERHMKDGDIIVFNRQPTLH 457
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N +P++ DFDGD ++ ++PQ++ + E++E+ + +Q
Sbjct: 458 KMSMMGHRVKILPWSTF-RMNLSVTTPYNADFDGDEMNLHLPQSLETKAEISEIAMVPRQ 516
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
LI Q+ + ++ + QD+LTA ++ + V + +M L M P+ + P I K
Sbjct: 517 LITPQANKPVMGIVQDTLTAVRMMTKRDVFIELPRMMDLLMQMPNWDGKIPQPAILK--P 574
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEG--------S 578
+W+GKQ+F++++P PD E + P K + K+I G S
Sbjct: 575 KPLWTGKQVFTLIIPGNVNVLRTHSTHPDDEDSGPYKWISPGDTKVIIEHGELLAGIICS 634
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ GNL + +V Y+ Q + WL G T+ + D + + +
Sbjct: 635 KTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTTVNAWLLAEGHTIGIGD------TIADQ 688
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDS---ESTRSLQGEHLSYEKQRSAA 694
+I +R+A+ + +++ +H + L + ++ ++ L+ + R+
Sbjct: 689 ATYKDIQETIRKAK--YDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILNDARDRTGG 746
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---S 751
+Q S+ F N+ AM AGSKG+ + + Q C+G Q+
Sbjct: 747 SAQRSLSEF------------------NNFKAMVVAGSKGSKINISQVIACVGQQNVEGK 788
Query: 752 LAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHS 806
P FR PH + Y P + VENS+L GL P E F H+
Sbjct: 789 RIPFGFRHRTLPHFIK----------------DDYGPESKGFVENSYLAGLTPSEFFFHA 832
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+ G + RRL+ M + YDGTVRN+ Q+VQ Y +G
Sbjct: 833 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSIA-QMVQLRYGEDG 887
>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Mastigoproctus giganteus]
Length = 887
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 159/590 (26%), Positives = 261/590 (44%), Gaps = 114/590 (19%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ E+GIP +A+ L E + +N +++ + + G Y+ R
Sbjct: 3 RTVITPDPNLRIDEVGIPRSIAQNLTFPEIVTPFNIDKMHELVRRGNNQYPGAKYIIRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + +GD+V+ NR P++H S++ ++VLP
Sbjct: 63 G----ERIDLRFHPKASDLHLQCGYKVERHVKNGDVVIFNRQPTLHKMSMMGHKIRVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + +Q+I QS + ++ +
Sbjct: 119 STF-RLNLSVTTPYNADFDGDEMNLHVPQSLETRAEVQELALVPRQIITPQSNKPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V L QM L MF P + P + K +W+GKQLFS+++
Sbjct: 178 QDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAVLK--PKPLWTGKQLFSLII 235
Query: 553 P------------PDFEYTFPSK-------DVYISGGKLISA------EGSSWLRDYEGN 587
P PD E P K V I G+LIS GS+ G+
Sbjct: 236 PDNVNLIRTHSTHPDDEDDGPYKWISPGDTKVLIEHGQLISGIVCKKTVGSA-----SGS 290
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSD------LYLASHSCSRKILM 640
L + +V Y Q V+ WL + G T+ + D Y+ + +K
Sbjct: 291 LMHVVFAELGHEVAGAFYGHIQTVVNNWLLLEGHTIGIGDTIADPQTYIDIQNTIKKAKH 350
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
D I E + + +L + N L +++ R L + ++ A +Q S+
Sbjct: 351 DVI-----EVIEKAHNDELE-PTPGNTLRQTFENQVNRILND-----ARDKTGASAQKSL 399
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
F N+ AM +G+KG+ + + Q C+G Q+ P F
Sbjct: 400 SEF------------------NNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGF 441
Query: 758 R---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
R PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 442 RKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG 485
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGT+RN+ G Q++Q Y +G
Sbjct: 486 LIDTAVKTAETGYIQRRLIKAMESVMATYDGTIRNSTG-QVIQLRYGEDG 534
>gi|449540821|gb|EMD31809.1| hypothetical protein CERSUDRAFT_144684 [Ceriporiopsis subvermispora
B]
Length = 1403
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 181/681 (26%), Positives = 306/681 (44%), Gaps = 93/681 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LEKG 377
GKR D R V++ DPN+++ E+ +P +VA+ L ER+ + N E L + + G
Sbjct: 351 GKRVDFSGRTVISPDPNLRIDEVAVPERVAKVLTYPERVTAHNIEVLRRAVRNGCDVHPG 410
Query: 378 ELYVCRKG-GLVRIRRI-------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV G G + + D L +GDI+ R + DGDIVL NR PS+H S++
Sbjct: 411 ANYVTTGGTGFKKFLKFGNRAAIADGLRIGDIVERHIIDGDIVLFNRQPSLHKLSIMCHR 470
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P + +N C P++ DFDGD ++ ++PQ AR E EL+++ L+ ++G
Sbjct: 471 VKVRPWRTF-RLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGE 529
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKISKDSVWSG 544
+++ QD +TA+ LL + Q Q+ + L P I+K + +W+G
Sbjct: 530 PVIAAIQDFITASFLLSQRDRFFDRRQFTQICSYLADADLKIDIPPPTIWKPQR--LWTG 587
Query: 545 KQLFSMLLPPD-----------------------FEYTFPSKDVYISGGKL--ISAEGSS 579
KQ+F++L+ P+ + P+ D+ + G L +++E
Sbjct: 588 KQIFNVLMRPNRSSKVLVNVESKCAKEEKPNVACYPMKKPAPDLAPNDGWLVIVNSEIMC 647
Query: 580 WLRD-------YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS 631
+ D + ++F +++ Y + + +V WL+ G ++ ++D+
Sbjct: 648 GVMDKATVGSGKKKSIFGVIMRDYGPHEAAAAMNRVAKVCARWLANFGFSLGINDVIPGP 707
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQR 691
+K M + +A + C+ L++ + L + + ++L E
Sbjct: 708 QLSQQKEDM------VMKAYNACD--DLIMKAKKGLLENKPGCDQEQTL-------EAMI 752
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
S+ LS +V + N+ K S+ N+ L M GSKG+++ + Q C+G Q
Sbjct: 753 SSILS--------NVRDQVGNICMKELSRHNAPLVMATCGSKGSVINVCQMVACVG-QQI 803
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
+A R P + +K + V NSF TGL+P E H+++ R+
Sbjct: 804 IA--GHRVPDGFQDRSLPHFPKKSREPPSKGF-----VRNSFYTGLSPTEFLFHAISGRE 856
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRLM + DL T YD +VRNA G +VQF Y +G E
Sbjct: 857 GLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGG-VVQFRYGDDGLDPACLEGD 915
Query: 870 DQPVGSLSACAISEAAYSALDQ---PISLLE--TSPLLNLKNVLEC-GSKKSNADQTMSL 923
QPV L A + + + S + P +LE L N + EC + + +S
Sbjct: 916 AQPVEFLRAWSHASSIASRSTRGLLPFEILEFVDRELANRRFTSECMPAYLAIVRSFISD 975
Query: 924 FLSNKLG--KRRHGFEYGALE 942
++NKL +R+HG Y ALE
Sbjct: 976 HIANKLAEVRRQHGM-YDALE 995
Score = 45.4 bits (106), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 1140 DNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGL 1199
++I C GI+A Q + ++ + G +I P H++++ + ++ GE +G+ G+
Sbjct: 1270 NHIVEVCQVLGIEAARQTIINEIQYTMQSHGMSIDPRHVMLLGDVMTYKGEVLGITRFGV 1329
Query: 1200 ALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDI 1259
A + S + A F AA G D++ G +++ G P+ TG
Sbjct: 1330 AKMK-----DSVLMLASFEKTTDHLFDAAALGKTDSIAGVSESIIMGN-PAAATGTSMPA 1383
Query: 1260 IYSGEGRTLSKP 1271
+ + +L KP
Sbjct: 1384 LVT-PAPSLGKP 1394
>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
Length = 773
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 157/587 (26%), Positives = 266/587 (45%), Gaps = 75/587 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + ++G+P +A L E + +N ERL + +
Sbjct: 23 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 82
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 83 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQP 138
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 139 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 197
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ Q+ R ++ + QD+L + + + + M+ + +P I K
Sbjct: 198 PKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILK 257
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPS-KDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P Y P V I G+L+S
Sbjct: 258 --PRPLWTGKQVFNLIIPKQINLLRYSVWHNDSEKGYITPGDTQVRIEKGELLSGTLCKK 315
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + D FL Q ++ WL + ++ + D +A S KI
Sbjct: 316 TLGTSTGSLIHVIWXEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDT-IADASTMEKI 374
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+E + ++L+ + L ++E R++ S+E + + L++A
Sbjct: 375 --NETISNAK-----AKVKELIKAAQEKLL----EAEPGRTMME---SFENRVNQVLNKA 420
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 421 RDDA--------GSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 469
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D ++ + VENS+L GL P E F H++ R+
Sbjct: 470 IPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 524
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G +
Sbjct: 525 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMDS 570
>gi|397135806|gb|AFO11398.1| RNA polymerase I, partial [Ogataea angusta]
Length = 866
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 156/574 (27%), Positives = 269/574 (46%), Gaps = 73/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNIQKLTELVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL ++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDTFIEYDQVMNMCFWIPNWDGVVPQPAILKPKPLWSG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ SM +P D P S + ++G + + + G L +++
Sbjct: 388 KQVLSMCIPQGIFLQRLDGSLLSPKDSGMLIVNGEIMFGVVNKATVGSSAGGLIHTVMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
KV L+ Q+V+ WL G ++ + D S + M I + A++
Sbjct: 448 KGPKVCAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSET------MKTITETIAIAKEKV 501
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q++++D+ N L+ A+ + R S+E++ S L++A A K +++
Sbjct: 502 --QEVIMDAQKN-LLEAEPGMTVRE------SFEQKVSKLLNEARDSAGKSAETSLKD-- 550
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAW 768
N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 551 ------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPH------- 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 --FTKDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 650
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 651 RLLKALEDIMVHYDGTTRNSLGD-VIQFIYGEDG 683
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 182 bits (463), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 154/580 (26%), Positives = 261/580 (45%), Gaps = 71/580 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+ GDPN+ L+E+G P A L E + +N E L ++
Sbjct: 353 LRQNLMGKRVDFSARTVICGDPNLSLEEVGTPRSTAMILTYPEVVTPYNIEFLQKLVNNG 412
Query: 372 RLLEKGELYVCRKGG----LVRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
+ G Y+ R G L R+ +A L G + R L DGD++L NR PS+H S++
Sbjct: 413 PTIYPGARYIVRDNGERIDLRMARKTNANLLYGWKVERHLLDGDVILFNRQPSLHKESMM 472
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL +L + +++ Q
Sbjct: 473 GHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQSEEARAELLQLALVPNNIVSPQ 531
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGK 545
L+ + QDSL + + V L+ Q+ L ++ P + P I W+GK
Sbjct: 532 RNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPDWDGVIPQPAIIKPRPRWTGK 591
Query: 546 QLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEGNLF 589
Q+ SM+LP KD + + GG+L+ S + G +
Sbjct: 592 QIISMVLPSGLNLLRVDKDKAPLSEKFSPLTDGGILVHGGQLMYGMFSKKTVGASGGGVV 651
Query: 590 QYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ Y + + F AQ V+ WL G ++ + D + R + D + G
Sbjct: 652 HTIFNEYGPEAAVSFFNGAQRVVNYWLLHNGFSIGIGDTIPDKKTIER--IEDAVRAGKA 709
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
E ++ +V S + A + R ++E + S AL+ A A
Sbjct: 710 EVEE-------IVQSATENTLEALPGMNIRE------TFESKVSRALNNAREAAGSETEK 756
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHE 762
+++L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 757 SLKDL--------NNAIQMARSGSKGSAINISQMTAIVGQQSVEGKRIPFGFKYRTLPH- 807
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 808 --------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 854
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + +L YDGTVRN+ G+ I+QF Y +G
Sbjct: 855 TGYIQRKLVKALEELMVKYDGTVRNSLGD-IIQFLYGEDG 893
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG + C +C + +K C GH+G I+ + H FL+ KLL ++C C I
Sbjct: 57 DPRLGTLDRQYYCETC-EEGQKECPGHYGHIELATPVYHIGFLTKTKKLLETVCHNCGKI 115
Query: 106 RKE 108
+ +
Sbjct: 116 KAD 118
>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 983
Score = 182 bits (463), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 267/584 (45%), Gaps = 86/584 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+++ ++G+P +A+ L E + +N +RL + E
Sbjct: 261 LMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEH 320
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L++G + R L D D+V+ NR PS+H S+
Sbjct: 321 PGAKYVIRDSG----ERIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLHKMSM 376
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+ S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + KQ+++
Sbjct: 377 MGHRVKVMDYSTF-RLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQIVSP 435
Query: 486 QSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
Q R ++ + QD+L A + + D+++ L M L + P + +WSG
Sbjct: 436 QGNRPIMGIVQDTLCAMIMFTKRDNLMKQDLVMDLLLKVPGWDGMIPPPCILKPQPLWSG 495
Query: 545 KQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISA-EGSSWLRDYEGNL 588
KQL+S+L+P PD E ++ S V + G L+S + G L
Sbjct: 496 KQLYSLLIPDGINCYTFLKEHPDLETSWSSPGDTRVVVENGVLLSGIVCKQTVGAVRGGL 555
Query: 589 FQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ + FL Q V+ +WL G ++ + D + + MD + +
Sbjct: 556 VHTIFNELGPEATKVFLGGTQRVINQWLVTNGFSIGIGDTITDAST------MDSVSKII 609
Query: 648 REAQDTCNFQQLM---VDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
EA + Q++ ++ M L E ++E + L++A +A K
Sbjct: 610 SEAHRIVD--QIIKDCIEDKMKGLPGMTYKE----------TFENNINFELNKARENAGK 657
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR--- 758
V +++ N++ M +GSKG+ + + Q + +G Q+ P FR
Sbjct: 658 SVQAQLKDC--------NNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRDRT 709
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
PH D T ++ + VENS+L+GL P E + H++ R+
Sbjct: 710 LPH---------FTKDDYTPHSRGF-----VENSYLSGLTPQEFYFHAMGGREGLIDTAV 755
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G I++F+Y +G
Sbjct: 756 KTAETGYIQRRLVKALEDVMVHYDGTVRNSLG-AIIEFAYGHDG 798
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 182 bits (463), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 153/585 (26%), Positives = 269/585 (45%), Gaps = 80/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L+E+G+P +A L E + +N E+L +S
Sbjct: 350 LRQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIEKLQTLVSNG 409
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R +L G + R + DGD++L NR PS+H S+
Sbjct: 410 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL++L + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + M+ P P I K W
Sbjct: 529 QRNGPLMGIVQDTLCGIYKICRRDVFLTKDQVMNIMMWVPDWDGVIPPPAILK--PRPRW 586
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I G+L+ S + G
Sbjct: 587 TGKQMISMALPSGLNLLRVDKDNSPLSEKFSPLADGGLLIHNGQLMYGMFSKKTVGASGG 646
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y + F AQ ++ WL G ++ + D + DE+
Sbjct: 647 GVIHTIFNEYGHGTAVAFFNGAQRIVNYWLLHNGFSIGIGD-----------TIPDELT- 694
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
++ ++ ++ V+S SA D+ + L G ++ ++E + S AL+ A +A
Sbjct: 695 -IQRIENCVRNRKKEVES---ITASATDN-TLEPLPGMNVRETFESKVSRALNNARDEAG 749
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF- 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 750 SETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYR 801
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 802 TLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 847
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 848 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 891
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIR 106
I+
Sbjct: 114 KIK 116
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 151/584 (25%), Positives = 267/584 (45%), Gaps = 77/584 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R + DGD++L NR PS+
Sbjct: 413 PDIHPGARYVIRNTG----ERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ ++V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL++L +
Sbjct: 469 HKESMMGHRIRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
Q+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 528 QIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVIPQPAILK-- 585
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKDVY--------ISGGKLISAEGSSWLRDYE---- 585
W+GKQ+ SM+LPP +D ++ G L+ G +
Sbjct: 586 PRPRWTGKQMISMVLPPGLNLLRVDRDKAPLSEKFSPLADGGLLVHSGELMYGMFSKKTV 645
Query: 586 ----GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y + ++F AQ V+ WL G ++ + D + + KI
Sbjct: 646 GATGGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDT-IPDLATIEKI-- 702
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VD SA D+ + L G ++ ++E + S AL+ A
Sbjct: 703 ----------EEAVRVRKEEVD---EITASATDN-TLEPLPGMNVRETFESKVSRALNNA 748
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
+A ++L N+ + M ++GSKG+++ + Q + +G Q S+ R
Sbjct: 749 RDEAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVG-QQSVE--GKR 797
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D + ++ + VENS+L GL P E F H++ R+
Sbjct: 798 IPFGFKYRTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAV 852
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 853 KTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGEDG 895
Score = 47.4 bits (111), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 154/572 (26%), Positives = 264/572 (46%), Gaps = 63/572 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ + ++G+P +A L E + +N +L + +
Sbjct: 264 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTYPEIVTPYNINKLQELVHNGPTQH 323
Query: 376 KGELYVCRKGG-LVRIRRIDA-----LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G V +R I A L+ G I+ R L DGD+++ NR PS+H S++
Sbjct: 324 PGAKYVIRDNGDRVDLRFIGAKGNLGLQYGWIVERHLDDGDVIIFNRQPSLHKMSMMGHK 383
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ++ A+ E+ +L + Q+I+ QS +
Sbjct: 384 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSLEAKAEIQQLCMVPLQIISPQSNK 442
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QD+L + + L M+ P+ P I K +W+GKQ
Sbjct: 443 PVMGIVQDTLCGITKFTRRDTFMDKNMVMNLLMWVPNWDGNVPPPAIMK--PKPLWTGKQ 500
Query: 547 LFSMLLP-----------PDFEYTFPSKD---VYISGGKLISA-EGSSWLRDYEGNLFQY 591
+ S+++P PD E T S V + G+L++ + G L
Sbjct: 501 ILSLVIPKVNCITHHSTHPDDESTDISPGDTRVIVEDGELLAGIVCKKTVGAAAGGLVHV 560
Query: 592 -LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++ + L Q ++ WL G ++ + D + + M +I + A
Sbjct: 561 SWMEHGPEAAKALLNGCQTIVNYWLLHNGFSIGIGD------TIADDATMAQINKIIASA 614
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+DT + + + + A + R ++E Q + AL++A A
Sbjct: 615 RDTV---KQTIHTAQRGQLKAMTGMTLRE------TFEAQVNRALNEAVNKA-------- 657
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
+ A K N++ M +GSKG+ + + Q S C+G Q+ R P +
Sbjct: 658 GSAAAKSFKVSNNVKQMVVSGSKGSNINISQMSACVGQQNVEGK---RIPFGFQYRSLPH 714
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D + ++ + VENS+L GL+P E F H++ R+ G + RRL
Sbjct: 715 FVKDDYSPESRGF-----VENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 769
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + D+ YDGTVRNA G+ I+QF+Y +G
Sbjct: 770 IKALEDIMVKYDGTVRNAQGH-IIQFAYGEDG 800
>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
Length = 1759
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 157/593 (26%), Positives = 256/593 (43%), Gaps = 102/593 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGD N+ L E+G+P +A L E + +N +L +
Sbjct: 350 LRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIAKLHQLVENG 409
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID +LE G + R L DGD ++ NR PS+H
Sbjct: 410 PNEHPGAKYVIRSDGT----RIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNRQPSLH 465
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKV+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL +
Sbjct: 466 KESMMGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCLVPNN 524
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QDSL + L + +Q L ++ P+ P I K
Sbjct: 525 IVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLMLWVPNWDGVIPQPAILK--P 582
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR- 597
W+GKQ+ SM++PP+ +Y KL + + L G L L+K+
Sbjct: 583 RPRWTGKQIISMVIPPEIS-------LYSKEDKLDNPRHDAGLLIQSGELMYGLLKKKSV 635
Query: 598 -----------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + FL Q+V+ WL G ++ + D
Sbjct: 636 GAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGFSIGIGDTV------------ 683
Query: 641 DEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAAL 695
+ T N Q +D H + L + + +L G ++ ++E + S AL
Sbjct: 684 --------PDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 735
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSL 752
+ A A +++ N+ + M +GSKG+ + + Q + +G Q
Sbjct: 736 NMARDQAGTSTMKSLKD--------SNNAVTMADSGSKGSSINISQMTALVGQQIVEGKR 787
Query: 753 APLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTS 809
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 788 IPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAG 833
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ ++QF Y +G
Sbjct: 834 REGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYGEDG 885
Score = 42.0 bits (97), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C ++ C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRQFKCKTC-SQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 1014
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 255/578 (44%), Gaps = 75/578 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ + E+G+P +A L + E + +N L + +
Sbjct: 270 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTLPEIVTRYNIGHLQALLKNGPSTH 329
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV + G RID L+ G I+ R + DGDI++ NR PS+H S+
Sbjct: 330 PGAKYVIKSNG----DRIDLRYTGNKGDLNLQYGWIVERHINDGDIIIFNRQPSLHKMSM 385
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ++ A+ E+ +L + Q+++
Sbjct: 386 MGHKVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVEAKAEIQQLCMVPLQIVSP 444
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVW 542
Q + ++ + QD+L + L+ + + M+ P P I K +W
Sbjct: 445 QGNKPVMGIVQDTLCGIRKFTQRDTFLTKSTVMCILMWVPGWDGNVPIPAILK--PKPLW 502
Query: 543 SGKQLFSMLLPP----DFEYTFPS---KDVYISGGKLISAEG--------SSWLRDYEGN 587
+GKQ+ S+++P F T P D+ K+I +G + G
Sbjct: 503 TGKQILSLIIPKVNCIAFHSTHPDDEKTDISPGDTKVIVEDGHLLAGIVCKKTVGTSSGG 562
Query: 588 LFQYLIKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + Y + FL Q ++ WL G ++ + D +
Sbjct: 563 LVHVIWMEYGSEACKHFLNGCQTIVNYWLIHNGFSIGIGDTIADN--------------- 607
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFK 704
+A + N L + ++ L+ + + G + ++E + + LS A
Sbjct: 608 --KAMEMINDIILAAKNQVSKLIGEAQKDHLKPQPGLTIRETFEAEVNQTLSDTVTSAGA 665
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
A + + N++ M AGSKG+ + + Q S C+G Q+ R P
Sbjct: 666 --------AAQRSFKEQNNVKQMVVAGSKGSYINISQMSACVGQQNVEGK---RIPFGFK 714
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D++ ++ + VENS+L GLNP E F H++ R+ G
Sbjct: 715 YRTLPHFVKDDHSPESRGF-----VENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETG 769
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRNA GN I+QF Y +G
Sbjct: 770 YIQRRLVKALEDVMVKYDGTVRNAQGN-IIQFVYGEDG 806
>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
Length = 871
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 159/571 (27%), Positives = 259/571 (45%), Gaps = 66/571 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A L E + +N +RLS + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPETVTPYNIQRLSELVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R + DGD VL NR PS+H S+
Sbjct: 213 PGARYVIRDSG----DRIDLRYHKRAGDIALQFGWKVERHINDGDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ AR EL++L + Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEEARAELSQLCLVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + ++ L + P P I K +W
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDNFIEYDKVMNLCYWIPEWDGVIPQPAILK--PKPLW 385
Query: 543 SGKQLFSMLLPP-------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYL 592
+GKQ+ SM +P D + KD + I G + + G + +
Sbjct: 386 TGKQMVSMAIPKGIHLQRVDDKNRLNPKDNSMLIIDGEIIYGVVDKKSVGATSGGIIHTI 445
Query: 593 IKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+ +V F Q+++ WL G ++ + D +A S R EI + +A+
Sbjct: 446 RQSKGPQVAAKFFGNVQKLVNYWLLHNGFSIGIGDT-IADASTMR-----EITTTIADAK 499
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
L L+ ST +E ++ L+QA +A K +++
Sbjct: 500 KKVEEITLKAQRDELELLPGMTLRST---------FESLVTSVLNQARDNAGKSSEVNLK 550
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRL 771
N DN++ M AGSKG+ + + Q S C+G Q R P +
Sbjct: 551 N--------DNNVKQMVVAGSKGSFINISQMSACVGQQIVEGK---RVPFGFADRTLPHF 599
Query: 772 RAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLM 829
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 600 TKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 654
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 655 KALEDIMVHYDGTTRNSLGD-IIQFIYGEDG 684
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
kawachii IFO 4308]
Length = 1747
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 153/585 (26%), Positives = 269/585 (45%), Gaps = 80/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L+E+G+P +A L E + +N E+L +S
Sbjct: 350 LRQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIEKLQTLVSNG 409
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R +L G + R + DGD++L NR PS+H S+
Sbjct: 410 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL++L + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + M+ P P I K W
Sbjct: 529 QRNGPLMGIVQDTLCGIYKICRRDVFLTKDQVMNIMMWVPDWDGVIPPPAILK--PRPRW 586
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I G+L+ S + G
Sbjct: 587 TGKQMISMALPSGLNLLRVDKDNSPLSEKFSPLADGGLLIHNGQLMYGMFSKKTVGASGG 646
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y + F AQ ++ WL G ++ + D + DE+
Sbjct: 647 GVIHTIFNEYGHGTAVAFFNGAQRIVNYWLLHNGFSIGIGD-----------TIPDELT- 694
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
++ ++ ++ V+S SA D+ + L G ++ ++E + S AL+ A +A
Sbjct: 695 -IQRIENCVRNRKKEVES---ITASATDN-TLEPLPGMNVRETFESKVSRALNNARDEAG 749
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF- 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 750 SETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYR 801
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 802 TLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 847
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 848 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 891
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIR 106
I+
Sbjct: 114 KIK 116
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 157/581 (27%), Positives = 270/581 (46%), Gaps = 73/581 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ + E
Sbjct: 265 LMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEIVTPYNIQKLTEMVRNGPNEH 324
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R+ G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 325 PGAKYVIRENG----DRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSM 380
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+EL A+ Q+I+
Sbjct: 381 MCHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSELCAVPLQIISP 439
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P + +WSG
Sbjct: 440 QSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQVMNMCYWIPDWDGVVPQPAILKPKPLWSG 499
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ S+ +P D T P S + ++G + + + G L ++
Sbjct: 500 KQILSLCIPNGIFLQRLDGSLTSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMRE 559
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
++ Q+V+ WL G ++ + D + + M I ++EA+D
Sbjct: 560 KGPTTCAKMFGNIQKVVNYWLLHNGFSIGIGD------AIADPETMKTITETIKEAKD-- 611
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q ++ ++ N L ++E +L+ S+E++ S L++A A K +++
Sbjct: 612 KVQTVIREAQKNLL----EAEPGMTLRE---SFEQKVSKILNEARDAAGKSAETSLKD-- 662
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAW 768
N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 663 ------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPH------- 709
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 710 --FTTDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 762
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
RL+ + D+ YDGT RN+ G+ ++QF Y +G T E
Sbjct: 763 RLLKALEDIMVHYDGTTRNSLGD-VIQFIYGEDGLDATTVE 802
>gi|240103982|ref|YP_002960291.1| DNA-directed RNA polymerase subunit A' [Thermococcus gammatolerans
EJ3]
gi|239911536|gb|ACS34427.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Thermococcus
gammatolerans EJ3]
Length = 905
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 161/599 (26%), Positives = 274/599 (45%), Gaps = 98/599 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR + R V++ DP I + E+G+P +A L + E++ +N+E+L R+L E
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLKQ----RVLNGPE 376
Query: 379 LY------VCRKGGLVRIRR------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
Y + +G +R+ + L++G + R L DGDIVL NR PS+H S++
Sbjct: 377 KYPGANYVIDPEGRRIRLMENNLETIAERLDIGWTVERHLEDGDIVLFNRQPSLHRMSIM 436
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
A V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ +
Sbjct: 437 AHRVRVMPYKTF-RLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPR 495
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWS 543
G L++ QD ++ +LL + + +++Q+ F PD + + +WS
Sbjct: 496 YGGPLIAGIQDHISGGYLLTREGAYFTRSEVEQMLTFAGVDVDELPKPDKVE-NGVELWS 554
Query: 544 GKQLFSMLLPPDF-----------------------EYTFPSKD----------VYISGG 570
GK +FS+LLP D E P + VYI G
Sbjct: 555 GKTIFSLLLPDDLTLWYRNKLCDEPERCEAIEKLIEEKLVPDPEEVRKIAYDGFVYIQNG 614
Query: 571 KLISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDL 627
KL+S + ++ R+ +G L +++ Y ++ FL ++ ++ +G T ++ D
Sbjct: 615 KLLSGAIDKKAYGRE-DGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDE 673
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL-- 685
L + R + EI +REA++ +N L+ A L G+ L
Sbjct: 674 DLPQEALDR---IKEI---IREAEE-----------RVNKLIEAYKRGELEPLPGKTLEE 716
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ E + A L++A +A K +A +Y +N + M K G++G +L + Q +
Sbjct: 717 TLESKIMAVLAEARDNAGK--------VAERYLGMNNHAVIMAKTGARGKILNITQMAAM 768
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
LG Q +R + GD A+ + V NS+ +GL P E F H
Sbjct: 769 LGQQSIRGKRLYRG---YRGRVLTHFKPGDLGARARGF-----VVNSYKSGLTPQEYFFH 820
Query: 806 SVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
++ R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 821 AMGGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFRYGEDGV 877
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIK 107
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 153/585 (26%), Positives = 269/585 (45%), Gaps = 80/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L+E+G+P +A L E + +N E+L +S
Sbjct: 350 LRQNLMGKRVDFSARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIEKLQTLVSNG 409
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R +L G + R + DGD++L NR PS+H S+
Sbjct: 410 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL++L + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + M+ P P I K W
Sbjct: 529 QRNGPLMGIVQDTLCGIYKICRRDVFLTKDQVMNIMMWVPDWDGVIPPPAILK--PRPRW 586
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I G+L+ S + G
Sbjct: 587 TGKQMISMALPSGLNLLRVDKDNSPLSEKFSPLADGGLLIHNGQLMYGMFSKKTVGASGG 646
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y + F AQ ++ WL G ++ + D + DE+
Sbjct: 647 GVIHTIFNEYGHGTAVAFFNGAQRIVNYWLLHNGFSIGIGD-----------TIPDELT- 694
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
++ ++ ++ V+S SA D+ + L G ++ ++E + S AL+ A +A
Sbjct: 695 -IQRIENCVRNRKKEVES---ITASATDN-TLEPLPGMNVRETFESKVSRALNNARDEAG 749
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF- 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 750 SETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYR 801
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 802 TLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 847
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 848 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 891
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIR 106
I+
Sbjct: 114 KIK 116
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 182 bits (462), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 155/592 (26%), Positives = 269/592 (45%), Gaps = 90/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ L E + +N ++L ++
Sbjct: 344 IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRG 403
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 404 DTQYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLH 459
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +Q
Sbjct: 460 KMSMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQ 518
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
LI Q+ + ++ + QD+L A ++ + V + M L M+ P + P I K
Sbjct: 519 LITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILK--P 576
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQ+FS+++P PD E + P K V I G+L+S S
Sbjct: 577 KPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCS 636
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ GNL + ++ Y+ Q V+ WL G T+ + D + + +
Sbjct: 637 KTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGD------TIADQ 690
Query: 638 ILMDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
+I +R+A QD + + + + ++ + + L+ + R+ + +
Sbjct: 691 ATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSA 750
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
Q S+ F N+ +M +GSKG+ + + Q C+G Q+
Sbjct: 751 QKSLSEF------------------NNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRI 792
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P FR PH + D +K + VENS+L GL P E F H++ R
Sbjct: 793 PFGFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTPSEFFFHAMGGR 838
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ M + YDGTVRN+ Q+VQ Y +G
Sbjct: 839 EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA-QMVQLRYGEDG 889
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSV--MEIGAVSE--------VTNPRLGLPNPTNECS 59
+ P I++ + GI E +++SV +E V E + +PR G+ + C
Sbjct: 8 FQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+C A + C GHFG ++ + H FL+ K+L +C C
Sbjct: 68 TC-AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYC 109
>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
Length = 1016
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 152/577 (26%), Positives = 268/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 277 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 336
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD +++NR PS+H S+
Sbjct: 337 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFIILNRQPSLHKESM 392
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 393 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 451
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P I W+G
Sbjct: 452 QRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIIKPRPKWTG 511
Query: 545 KQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P E P+ D +++ GG+L+ S G ++I
Sbjct: 512 KQIISLVIPKGLNLIRSSEEGLSPANDEGLFVHGGELMYGLFSKKSVGASGGGIIHIIFN 571
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D + S ++I ++
Sbjct: 572 EKGPEVAMNFFNGAQTVVNYWLLHNGFSIGIGDT-IPDRSTIQQI------------ENA 618
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V SA ++E L G ++ ++E + S AL+ A +A ++
Sbjct: 619 VNKQKADV---AEITRSATENE-LEPLPGMNVRETFESRVSKALNAARDEAGAVTEKSLK 674
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 675 DL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 722
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 723 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 772
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + + YDGTVRN+ G+ +VQF Y +G
Sbjct: 773 IQRRLVKALEGVMAKYDGTVRNSLGD-VVQFVYGEDG 808
>gi|31127024|gb|AAF26639.2|AF138989_1 RNA polymerase II largest subunit [Limnadia lenticularis]
Length = 624
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 163/608 (26%), Positives = 263/608 (43%), Gaps = 104/608 (17%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N E++ + + G ++ R
Sbjct: 3 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMQELVRRGNSQYPGAKFIIRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + DGD+V+ NR P++H S++ VKVLP
Sbjct: 63 G----DRIDLRFNPKSSDLHLQCGYKVERHVHDGDLVVFNRQPTLHKMSMMGHRVKVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ +
Sbjct: 119 STF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHVTPRQIITPQANKPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+L A + + V L QM L MF P + P I K +W+GKQLF++++
Sbjct: 178 QDTLCAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAIIK--PRPLWTGKQLFTLII 235
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL 592
P PD E P K + K+I G L +L +
Sbjct: 236 PGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVIVENGELIMGILCKKTLGASAASLLHII 295
Query: 593 IKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSD------LYLASHSCSRKILMDEIFY 645
+V Y Q V+ WL G ++ + D YL + +K D I
Sbjct: 296 FMELGHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLDIQATIKKAKEDVI-- 353
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+++ SH N + + R ++E Q + L+ A
Sbjct: 354 ------------EVIQKSH-NDELEPTPGNTLRQ------TFENQVNRILNDARDKT--- 391
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---F 759
A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR
Sbjct: 392 -----GGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL 446
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 447 PHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA 490
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGS 875
G + RRL+ M + YDGTVRN+ G Q++QF Y +G + + E QP
Sbjct: 491 VKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQFRYGEDGLAGESVEFQSQPTIK 549
Query: 876 LSACAISE 883
LS A +
Sbjct: 550 LSNKAFEK 557
>gi|123979332|gb|ABM81491.1| RNA polymerase II largest subunit [Masonhalea richardsonii]
Length = 993
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 152/588 (25%), Positives = 269/588 (45%), Gaps = 89/588 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 315
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 316 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 371
Query: 426 IALT-----------VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +
Sbjct: 372 MGHKGXHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQ 430
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDI 533
L + +++ Q L+ + QD+L + + V L+ Q+ + ++ P + P
Sbjct: 431 LCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQP 490
Query: 534 FKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDY 584
+ ++W+GKQ+ S+++P S++ + ISGG+L+ +
Sbjct: 491 AIVKPLAMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKTVGA 550
Query: 585 EGNLFQYLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G +++ ++ + + F AQ V+ WL G ++ + D H+
Sbjct: 551 SGGGVIHIVFNEKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT--------- 601
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASV 700
+++ + N Q+ D SA ++E SL G ++ ++E + S AL++A
Sbjct: 602 ----IQQIEKAVNLQK---DEVAKITKSATENE-LESLPGMNVRETFESKVSKALNKARD 653
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
DA +++L N+ M ++GSKG+ + + Q + +G Q P F
Sbjct: 654 DAGTATEKSLKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGF 705
Query: 758 RF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 706 KYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLI 751
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 752 DTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 798
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 182 bits (461), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 158/588 (26%), Positives = 267/588 (45%), Gaps = 91/588 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN++L E+G+P +A L E + +N +L +
Sbjct: 350 LRSNLMGKRVDFSARTVITGDPNLELDEVGVPRSIARILTYPETVTPYNIGKLHQLVQNG 409
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID +LE G+ + R + DGD ++ NR PS+H
Sbjct: 410 PNDHPGAKYIIRNDG----SRIDLRHHKRAGAISLEYGNKVERHIVDGDFIIFNRQPSLH 465
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ +L +
Sbjct: 466 KESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVNQLCMVPLN 524
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + L V L+ M + ++ P + P I
Sbjct: 525 IVSPQRNGPLMGIVQDTLAGVYKLTRRDVFLTKETMMNVLLWVPSWDGVIPQPAIIKPRP 584
Query: 541 VWSGKQLFSMLLPP--------DFEYTFPSKD--VYISGGKL--------ISAEGSSWLR 582
W+GKQL SM++P D P KD + IS G+L + S +
Sbjct: 585 RWTGKQLISMIIPKEVNLHTANDNREDAPLKDDGLLISEGELLFGLITKKVVGATSGGVV 644
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
N +L R +F Q V+ WL G ++ + D + K +D+
Sbjct: 645 HIIFNELGWLEAR------NFFTGCQTVVNYWLYHNGFSIGIGD------TIPDKATIDK 692
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASV 700
I ++E +D + L++++ N L SL G ++ ++E S AL+ A
Sbjct: 693 IEGAVKEQKDIVD--GLVLEATTNKL---------ESLPGMNVRETFESLVSKALNTARD 741
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSF 757
A ++++ N+ + M ++GSKG+ + + Q + +G Q P F
Sbjct: 742 KAGTRTEQSLKDI--------NNAVIMARSGSKGSTINISQMTALVGQQSVEGKRIPFGF 793
Query: 758 RF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 794 KYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPSEFFFHAMAGREGLI 839
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 840 DTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IVQFIYGEDG 886
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + +C++C A C GHFG I+ + HP FL I KLL C C
Sbjct: 55 LNDPRLGSIDRGFKCATCDAG-MAECPGHFGHIELAKPVYHPGFLKKIKKLLEIACHNCG 113
Query: 104 TIRKER 109
I +R
Sbjct: 114 KILLDR 119
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/595 (26%), Positives = 265/595 (44%), Gaps = 92/595 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER-LSVCISF 371
I+ ++GKR D R V+T DPN+++ E+G+P +A+ + E + +N + L +
Sbjct: 343 IRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDHMLELVRRG 402
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 403 NSQYPGAKYIIRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLH 458
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+VLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q
Sbjct: 459 KMSMMGHRVRVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQ 517
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V L QM L M P + +P I K
Sbjct: 518 IITPQANKPVMGIVQDTLTAIRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPTPCILK--P 575
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQLFS+++P PD E P K + K++ G
Sbjct: 576 KPMWTGKQLFSLIIPGNVNLIRTHSTHPDEEDNGPYKWISPGDTKVMVEHGELVMGILCK 635
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
S L G+L +V Y Q V+ WL G ++ + D +
Sbjct: 636 STLGTSAGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYL-- 693
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 694 ----EIQKAIKKAKE--DVIEVIQKAH-NMDLEPTPGNTLRQ------TFENQVNRILND 740
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM +G+KG+ + + Q C+G Q+ P
Sbjct: 741 ARDKT--------GGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIP 792
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E + H++
Sbjct: 793 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGG 836
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G S
Sbjct: 837 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLS 890
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/595 (26%), Positives = 265/595 (44%), Gaps = 92/595 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER-LSVCISF 371
I+ ++GKR D R V+T DPN+++ E+G+P +A+ + E + +N + L +
Sbjct: 343 IRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDHMLELVRRG 402
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 403 NSQYPGAKYIIRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLH 458
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+VLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q
Sbjct: 459 KMSMMGHRVRVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQ 517
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V L QM L M P + +P I K
Sbjct: 518 IITPQANKPVMGIVQDTLTAIRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPTPCILK--P 575
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQLFS+++P PD E P K + K++ G
Sbjct: 576 KPLWTGKQLFSLIIPGNVNLIRTHSTHPDEEDNGPYKWISPGDTKVMVEHGELVMGILCK 635
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
S L G+L +V Y Q V+ WL G ++ + D +
Sbjct: 636 STLGTSAGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYL-- 693
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 694 ----EIQKAIKKAKE--DVIEVIQKAH-NMDLEPTPGNTLRQ------TFENQVNRILND 740
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM +G+KG+ + + Q C+G Q+ P
Sbjct: 741 ARDKT--------GGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIP 792
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E + H++
Sbjct: 793 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGG 836
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G S
Sbjct: 837 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLS 890
>gi|241633681|ref|XP_002408700.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215501234|gb|EEC10728.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1394
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 172/682 (25%), Positives = 277/682 (40%), Gaps = 112/682 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--SFRLLEK 376
GKR D R V++ DPN+++ ++G+P VA+ L ER+ N + + +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHPG 417
Query: 377 GELYVCRKGGLVRIRRIDALEL-------GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
R G R R +L GD++ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFLESRDSGFKRYLRYGNRDLLAQQLRPGDVVERHLRDGDVVLFNRQPSLHKLSIMAHL 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KVLP N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 478 AKVLP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGTRANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKD---------- 539
L++ QD +T +LL + V + QL + L+ IS +
Sbjct: 537 PLIAAIQDFITGGYLLTQRDVFFDRAKAAQLAAY----MLAGKDVSISVELPPPAIRKPV 592
Query: 540 SVWSGKQLFSMLLPPD-----FEYTFPSKDVYISGGKLISAEGSSWLRDYE--------- 585
+W+GKQ+FS+++ P Y SG ++ + + +R+ E
Sbjct: 593 CLWTGKQIFSLIIRPSRSCPVLASLRAKGKSYTSGEEMCANDAYVLIRNSELLSGTMDKG 652
Query: 586 -------GNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLY--------- 628
N+F L++ Y D+ D ++ + ++ RG ++ + D+
Sbjct: 653 TMGSGSKNNIFYILLRDYGDQYAADAMWRLARIASFYMQNRGFSIGIGDVTPGAGLLKAK 712
Query: 629 --LASHSCSR-KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
L S +R + + ++ G +AQ CN ++ + + L +D L+ H
Sbjct: 713 HDLVSEGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVSLKELSVVRDHAGKACLRELH- 771
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
K NS L M GSKG+ + + Q C
Sbjct: 772 ----------------------------------KTNSPLIMAVCGSKGSFINISQMIAC 797
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
+G Q A R P+ + D T A+ + VE+SF +GL P E F H
Sbjct: 798 VGQQ---AISGHRVPNGFEDRSLPHFERNDRTPQARGF-----VEDSFYSGLTPTEFFFH 849
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ + DLC+ YD TVRN+ G+ IVQF Y +G
Sbjct: 850 TMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDMTVRNSCGD-IVQFCYGADGLDP 908
Query: 864 PTGE-IGDQPVGSLSACAISEA-----AYSALDQPISLLETSPLLNLKNVLECGSKKSNA 917
P E D PV ++ A LDQ L +L K+ CG A
Sbjct: 909 PAMEGKDDTPVDFGRVMELTRARKPCRGEKPLDQDAILRIGEEVLGGKSYEGCGESFREA 968
Query: 918 DQTMSLFLSNKLG--KRRHGFE 937
+ K+ + RHG +
Sbjct: 969 LSKFVHGYAAKVASTRARHGLD 990
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
TR+ +N GI+A + + + G ++ HL+++A+ ++ GE +G+
Sbjct: 1245 TRTSSNNTSEVEKCLGIEAARATIIREIGVTMESHGISVDRRHLMLLADLMTFRGEVLGI 1304
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA ++ S + A F AA G VD + G +++ G +GT
Sbjct: 1305 TRHGLARMKE-----SALMLASFERTADHLFDAAYYGQVDEITGVSESIILGVPMGIGT- 1358
Query: 1255 GHFDIIYSGEGRTLSKP 1271
G FD+++ + R L++P
Sbjct: 1359 GFFDMVHRVDWRPLAEP 1375
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 152/585 (25%), Positives = 269/585 (45%), Gaps = 78/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L +E + +N +L+ + +
Sbjct: 334 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAKTLTYTEIVTPYNINKLAALVENG 393
Query: 372 RLLEKGELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
+ G Y+ R G + + L+ G + R + DGD++L NR PS+H
Sbjct: 394 PDIHPGAKYIIRPTGEKINLGFNKGQAQGRAMLQYGFKVERHIQDGDVILFNRQPSLHKE 453
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ ++ EL EL + ++
Sbjct: 454 SMMAHKVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESKAELRELALVPLNIV 512
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVW 542
+ Q L+ + QD+L + + L+ + + M+ P + P + W
Sbjct: 513 SPQRNGPLMGIVQDTLCGIYKICRRDTFLTKDHVMNIMMWVPDWDGVIPQPAILKPRPRW 572
Query: 543 SGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM+LP P E P KD V+I GG+L+ + S + G
Sbjct: 573 TGKQIISMVLPSGLNLLRLDKDGAPLAERFSPLKDGGVFIHGGELMFGQFSKKTVGATGG 632
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y D + F AQ V+ WL G ++ + D + + ++ ++E
Sbjct: 633 GVIHTIFNEYGSDVAMSFFNGAQRVVNYWLLHNGFSIGIGDTIPDAATVAK---IEEAVR 689
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
+E D + D+ N L L G ++ ++E + S AL+ A DA
Sbjct: 690 DRKEEVD-----DITDDATRNAL---------DPLPGMNIRETFESKVSRALNNARDDA- 734
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF- 759
N+ K N + M ++GSKG+ + + Q +G Q P F++
Sbjct: 735 -------GNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYR 787
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 788 TLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 833
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 834 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFIYGEDG 877
Score = 49.3 bits (116), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + T +C++C + C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 37 LNDPRLGTIDRTWKCATC-EEGINECPGHFGHIELASPVFHIGFLTKIKKLLETVCLNCG 95
Query: 104 TIR 106
I+
Sbjct: 96 KIK 98
>gi|123979330|gb|ABM81490.1| RNA polymerase II largest subunit [Asahinea scholanderi]
Length = 983
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 150/577 (25%), Positives = 267/577 (46%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 315
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD + NR H S+
Sbjct: 316 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIXFNRQXXXHKESM 371
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 372 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 430
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + ++W+G
Sbjct: 431 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 490
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P SK+ + ISGG+L+ + G +++
Sbjct: 491 KQILSLVIPTGLNLLRGSKEGFSPLNDDGLLISGGELMYGLLNKKSVGASGGGVIHIVFN 550
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + ++F AQ V+ WL G ++ + D H+ +++ +
Sbjct: 551 EKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIEKA 597
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
+ Q+ D + SA ++E SL G ++ ++E + S AL++A DA ++
Sbjct: 598 VSTQK---DEVTDITRSATENE-LESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 653
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 654 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 701
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 702 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 751
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 752 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 787
>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
Length = 1020
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/626 (25%), Positives = 281/626 (44%), Gaps = 96/626 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L I
Sbjct: 276 VRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLIKNG 335
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + DGD ++ NR PS+H
Sbjct: 336 PNEHPGARYVIRDNG----ERIDLRYHRRAGDLVLQYGWKVERHIVDGDFIIFNRQPSLH 391
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L +
Sbjct: 392 KESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLN 450
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V L+ Q+ + ++ P + P +
Sbjct: 451 IVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQGQVMNILLWVPDWDGIIPQPAILKPTP 510
Query: 541 VWSGKQLFSMLLPPDFEYT-------FPSKDVYISGGKLISAEGSSWLRDYE--GNLFQY 591
VW+GKQ+ S+++P K ISGG+L+ + + + G +
Sbjct: 511 VWTGKQIVSLIIPAGLNLVRDKNHNPLDDKGALISGGELMYGLLTKRIVGAQMAGVIHIV 570
Query: 592 LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSD-------LYLASHSCSRKILMDEIF 644
++ + ++F AQ V+ WL G ++ + D + L + ++K DE+
Sbjct: 571 YNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTIPDRETIRLIEEAVTKK--KDEVA 628
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDA 702
+EA ++ + +L G ++ ++E + S AL+ A +A
Sbjct: 629 VITKEATNS----------------------TLETLPGMNIRETFESKVSKALNSARDNA 666
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF 759
+++L N+ M ++GSKG+ + + Q + +G Q P F++
Sbjct: 667 GTVTEDSLKDL--------NNATQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGFKY 718
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + ++ + VENS+L GL P F H++ R+
Sbjct: 719 RTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTGFFFHAMAGREGLIDT 764
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVG 874
G + RRL+ + D+ YDGT+RN+ G+ IVQF Y +G I QP+
Sbjct: 765 AVKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGD-IVQFVYGEDGLD--GAHIEPQPI- 820
Query: 875 SLSACAISEAAYSALDQPISLLETSP 900
+ C S+A + D + L+E P
Sbjct: 821 DIIKC--SDAKFEK-DFRVDLMEEDP 843
>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
Length = 780
Score = 182 bits (461), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/600 (26%), Positives = 272/600 (45%), Gaps = 77/600 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 23 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 82
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 83 PHPPPGKTGARYIIRDDG----QRLDLRYLKKSSDMHLELGYKVERHLNDGDFVLFNRQP 138
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 139 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 197
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ Q+ R ++ + QD+L + + + + M+ + +P I K
Sbjct: 198 PKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPVILK 257
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V I G+L++
Sbjct: 258 --PRPLWTGKQVFNLIIPKQINLLRYSAWHQEKEKGFITPGDTQVRIEKGELLTGTLCKK 315
Query: 580 WLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL ++ + D + +
Sbjct: 316 TLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD------TIADAA 369
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I ++ A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 370 TMEKINETIQNAKNEV--KELIRAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 420
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 421 RDDAGSS--------AQKSLSEHNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 469
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D ++ + VENS+L GL P E F H++ R+
Sbjct: 470 IPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 524
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSL 876
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G I QP+ SL
Sbjct: 525 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMDAVW--IESQPLESL 581
>gi|397135942|gb|AFO11466.1| RNA polymerase I, partial [Trichomonascus petasosporus]
Length = 873
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 170/640 (26%), Positives = 288/640 (45%), Gaps = 100/640 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN++L ++G+P +A L E + +N +RL+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLELDQVGVPKSIARTLTYPEIITPYNIQRLTELVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID AL+ G + R + D D VL NR PS+H S+
Sbjct: 213 PGAKYIIRDTG----ERIDLRYHKRAGDIALQYGWKVERHIQDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L + Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + L Q+ + + P +P I + +W
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMSKRDNFLEFDQVMNILFWIPSWDGNVPTPTILR--PKPLW 385
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYE----------------- 585
+GKQ+ SM +P +Y+ +L S GS+W+ +
Sbjct: 386 TGKQIISMCIP---------NGIYLQ--RLDSEGGSAWISPKDTGMLISKGEIMFGAVDK 434
Query: 586 -------GNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
G L +++ +V +F Q+V+ WL ++ + D + + S+
Sbjct: 435 KTVGATSGGLVHTIMREKGPQVACNFFGEVQKVVNYWLLHNSFSIGIGDTIADATTMSQ- 493
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ D I A Q+L++ N L S + R ++E S A +Q
Sbjct: 494 -VYDHI------ATAKAEVQKLILKVQSNDL-SPDPGMTLRE------TFEAHASKAFNQ 539
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
A DA K ++ L N++ M +GSKG+ + + Q S C+G Q
Sbjct: 540 ARDDAGKSAEKSLKEL--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK--- 588
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R P D + ++ +I ENS+L GL P E F H++ R+
Sbjct: 589 RIPFGFQDRTLPHFTKDDFSGESRGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTA 643
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGS 875
G + RRL+ + D+ YDGT RN+ G+ I+QF Y +G ++ Q V +
Sbjct: 644 VKTAETGYIQRRLVKALEDVMVHYDGTARNSLGD-IIQFLYGEDGLDGT--QVEKQNVDT 700
Query: 876 LS-ACAISEAAYSALDQPISLLETSPLLNLKN-VLECGSK 913
+S + A E Y I L+++ + LK+ +LE G++
Sbjct: 701 MSGSMAQFERRYR-----IDLMDSHGVKALKSQLLESGAE 735
>gi|123979344|gb|ABM81497.1| RNA polymerase II largest subunit [Rhizocarpon superficiale]
Length = 991
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 152/589 (25%), Positives = 270/589 (45%), Gaps = 92/589 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N ++L + E
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEH 315
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 316 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFIIFNRQPSLHKESM 371
Query: 426 IALT----------VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L
Sbjct: 372 MGHKGHKESMMGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQL 430
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPD 532
+ +++ Q L+ + QD+L + + V L+ Q+ + ++ P P
Sbjct: 431 CMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPHPA 490
Query: 533 IFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRD 583
IFK +W+GKQ+ S+++P + PS + + + GG+L+ +
Sbjct: 491 IFK--PRPMWTGKQIISLVIPENLSLVRPSSEGFSPLNDDGLGVHGGQLMYGLFNKKSVG 548
Query: 584 YEGNLFQYLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G +++ ++ + + F AQ V+ WL G ++ + D ++
Sbjct: 549 ASGGGIIHIVFNEKGPEAAMKFFNGAQTVVNYWLLRNGFSIGIGDTIPDRNT-------- 600
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
+++ +D N Q+ V +A ++E L G ++ ++E + S AL++A
Sbjct: 601 -----IQQIEDAVNKQKEDV---AEITRNATENE-LEPLPGMNVRETFESKVSKALNKAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLS 756
DA +++L N+ + M ++GSKG+ + + Q + G Q P
Sbjct: 652 DDAGTVTEESLKDL--------NNAIQMARSGSKGSTINISQMTAVAGQQSVEGKRIPFG 703
Query: 757 FRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 704 FKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGL 749
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 797
>gi|397135858|gb|AFO11424.1| RNA polymerase I, partial [Pichia membranifaciens]
Length = 870
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 160/583 (27%), Positives = 269/583 (46%), Gaps = 77/583 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A+ L E + +N + L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPRSIAKTLTYPEIVTPYNIQALTEMVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R+ G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRENG----DRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+EL A+ Q+I+
Sbjct: 269 MCHRVRVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSELCAVPLQIISP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + L + ++ + + P P I K +W
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDSFLEYSEVMSICYWIPDWDGVIPQPAILK--PKPLW 385
Query: 543 SGKQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQ+ S+ +P D P S + + G + + + G L +
Sbjct: 386 TGKQIMSLCIPKGIFLQRLDGSLLSPKDSGMLILDGEIIFGVVNKATVGSSAGGLIHTTM 445
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ V L+ Q+V+ WL G ++ + D + M I ++EA+D
Sbjct: 446 REKGPTVCAKLFGNIQKVVNYWLLHNGFSIGIGDAIADPET------MKAITETIKEAKD 499
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q ++ D+ N L ++E +L+ S+E++ S L++A A K +++
Sbjct: 500 KV--QGVIRDAQKNLL----EAEPGMTLRE---SFEQKVSKILNEARDSAGKSAETSLKD 550
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCA 766
DN++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 551 --------DNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPH----- 597
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + +K + VENS+L GL P E F H++ R+ G +
Sbjct: 598 ----FTTDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
RRL+ + D+ YDGT RN+ G+ ++QF Y +G T E
Sbjct: 649 QRRLLKALEDIMVHYDGTTRNSLGD-VIQFIYGEDGLDATTVE 690
>gi|397135812|gb|AFO11401.1| RNA polymerase I, partial [Ogataea minuta]
Length = 870
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 154/574 (26%), Positives = 270/574 (47%), Gaps = 73/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLE 375
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N ++L+ + ++
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKVLTYPEIVTPYNIQKLTELVLNGPNEH 212
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRYNKRAGDIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL ++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMCFWIPNWDGVVPQPAILKPKPLWSG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ SM +P D P S + ++G + + + G L +++
Sbjct: 388 KQVLSMCIPQGIFLQRLDGSLLSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTVMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V L+ Q+V+ WL G ++ + D + S + K + + I +
Sbjct: 448 KGPQVCAQLFGNIQKVVNYWLLHNGFSIGIGDAI--ADSATMKTITETIAIAKEKV---- 501
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q++++D+ N L+ A+ + R S+E++ S L++A A K +++
Sbjct: 502 --QEVIMDAQNN-LLEAEPGMTVRE------SFEQKVSKLLNEARDSAGKSAETSLKD-- 550
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAW 768
N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 551 ------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPH------- 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 --FTKDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 650
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 651 RLLKALEDIMVHYDGTTRNSLGD-IIQFVYGEDG 683
>gi|119643527|gb|ABL85575.1| RNA polymerase II largest subunit [Flavopunctelia flaventior]
Length = 995
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/600 (26%), Positives = 277/600 (46%), Gaps = 81/600 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 268 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 327
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DG+ ++ NR P H S+
Sbjct: 328 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGNYIIFNRQPXXHKESM 383
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 384 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 442
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + ++W+G
Sbjct: 443 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 502
Query: 545 KQLFSMLLPPDF------EYTF-PSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P E F P D + IS G+L+ + G +++
Sbjct: 503 KQILSLVIPTGLNLLRGNEEGFSPLNDDGLLISSGELMYGLLAKKTVGASGGGVIHIVFN 562
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D H+ +++ ++
Sbjct: 563 EKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHT-------------IQQIENA 609
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V + SA ++E SL G ++ ++E + S AL++A DA ++
Sbjct: 610 VNNQKAEV---LEITRSATENE-LESLPGMNVRETFESKVSKALNKARDDAGAVTEKSLK 665
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 666 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 713
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 714 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 763
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISE 883
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G G I Q V L AC+ +
Sbjct: 764 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDGLD--GGHIEPQRVDIL-ACSTKQ 819
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 164/593 (27%), Positives = 262/593 (44%), Gaps = 92/593 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ L E+G+P +A+ L + E + +N + L ++
Sbjct: 332 IRGNLMGKRVDFSGRTVITPDPNLALDELGVPKTIAQNLTVPELVTPFNLDILQDLVNRG 391
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R G R+D L++G + R + D DIV+ NR P++H
Sbjct: 392 DSHYPGAKYIIRDNGA----RVDLRYHPRLSDLHLQIGYTVERHMRDNDIVIFNRQPTLH 447
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+VLP S+ +N +P++ DFDGD ++ ++PQ+ A+ E+ EL + +
Sbjct: 448 KMSMMGHRVRVLPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSQEAKAEILELCMIPRM 506
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
++ Q+ R ++ + QD+LTA L + V + M L M P + P I K
Sbjct: 507 ILTPQANRPVMGIVQDTLTACRKLTKRDVFIDRATMFDLLMLLPKWNGKMPIPTIVK--P 564
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQLFSM++P PD E P K V I G+L+S
Sbjct: 565 KPLWTGKQLFSMIIPGNVNLIRTHSTHPDDEDNGPYKWISPGDTKVLIEHGQLLSGILCK 624
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + + Y+ Q V+ WL G ++ + D +A + +
Sbjct: 625 KTLGASAGSLMHIVTLELGCYIAASFYSDIQVVVNTWLLTEGHSIGIGDT-IADQATYLE 683
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
I D I R QD + + + + ++ + L+ + ++ A +Q
Sbjct: 684 I-KDTIH---RAKQDVIDVIERAHNDELEATPGNTLRDTFENSVNRILNDARDKTGASAQ 739
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
S+ F N+ AM AGSKG+ + + Q C+G Q+ P
Sbjct: 740 RSLSEF------------------NNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIP 781
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E F H++
Sbjct: 782 FGFRHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHTMGG 825
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + AYDGTVRNA G Q+VQ Y +G
Sbjct: 826 REGLIDTAVKTAETGYIQRRLIKAMESVMVAYDGTVRNATG-QLVQLRYGEDG 877
>gi|329132885|gb|AEB78333.1| RNA polymerase II largest subunit [Diplonema sp. ATCC 50224]
Length = 1010
Score = 181 bits (460), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 212/853 (24%), Positives = 360/853 (42%), Gaps = 141/853 (16%)
Query: 82 ILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFK 141
+LH +L + LL +C C I K P KY A+ P R +
Sbjct: 8 MLHFGYLRTMVNLLKCVCFHCSLI------------KLDPDDPKY-REAAAKRLPEHRLR 54
Query: 142 LSSKDLSGKTAIIV-----EIDE---------KLSKKNKKLPDDYWGFIPFDAQQ----- 182
+ +K +GK+ E+DE K K P + +I + +Q
Sbjct: 55 MFAKACAGKSICEAKHGSDELDEAHGAMSGCGKPQPKIYHEPHSFNLWIEYTSQSVDAEG 114
Query: 183 --EENSVKPN--RKVLSCKQVSYLLKDVDPSI--REEFILSKDAPFLKCFPVTPNNHRV- 235
+ ++P RK+L CK L D+ S R E++L L FP++P R
Sbjct: 115 ADRKQRLQPEDARKIL-CKIRESQLHDLGFSAQSRPEWML------LTEFPISPPAVRPA 167
Query: 236 --------TEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHL-- 285
TE + + K L ++N LKK V + D ++QD + + H+
Sbjct: 168 ITMDAVTKTEDHTTYMYNKILIYNN---KLKKAVAQQAAD----SVIQDYSNLVQYHIVT 220
Query: 286 ---DKSSRKDSAEVRQKKNID-----ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIK 337
++ + +VR + I I G ++ ++GKR D R V+ GD I
Sbjct: 221 LMDNEKNGIPKCKVRSGQPIKSIRERIKGKGGR--VRSNLMGKRVDFSARTVIGGDSQIG 278
Query: 338 LKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGL---VRIRRI 393
+ E+G+P +A + ER+ S+N + L V ++ + G ++ R+ G + RR
Sbjct: 279 MDEVGVPLSIAANMTFPERVTSYNQDILKVLVANGPDKYPGAKFIIREDGTRINLAFRRK 338
Query: 394 DA---LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
D+ L+ G I+ R + D+VL NR P++H S++ +V+P + +N SP++
Sbjct: 339 DSELFLQPGYIVERHVLTNDVVLFNRQPTLHRMSMMGHRARVMPFCTF-RLNLSATSPYN 397
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
DFDGD ++ ++PQ++ ++ EL E + + K +I+ +S ++ + QDSL HLL + S
Sbjct: 398 ADFDGDEMNLHVPQSVLSKSELQEFMMVPKNIISPKSNSPVMGIVQDSLLGIHLLTKRST 457
Query: 511 LLSHLQMQQLQMFCPHRFLSPDIFKISK-DSVWSGKQLFSMLLPPDFEYTFPSKDVYISG 569
L M M P I I K + +W+GKQLFS++LPP +T S +
Sbjct: 458 FLDKQFMMNAVMHIPTMPAQIPIPAILKPEMLWTGKQLFSLVLPP-VNFTATSNEDISEP 516
Query: 570 GKLISAEGSSWLRDYEGNLFQYLIKRYR------------------DKVLDFLYAAQEVL 611
+ + + +R +GNL +I + D D + Q +
Sbjct: 517 DRFLPL-ADTKVRIEKGNLHTGIIDKKSVGSSENSLVHVIHNEFSPDWARDLINGIQRIT 575
Query: 612 CEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSA 671
+L +G +V + D + ++K++ + I + CN
Sbjct: 576 AFYLINKGFSVGVQD--TVADVNTKKMIQEIIRRSYDSVDELCN---------------- 617
Query: 672 KDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFK 729
K E + G+ + ++E + L++ DA K A + ++ NS M
Sbjct: 618 KAQEGLKRQPGKTVKETFEANINKILNKTREDAGKR--------AQQSLTRSNSFKVMVS 669
Query: 730 AGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVV 789
AGSKG+ L + Q + +G Q+ R P+ D ++ + V
Sbjct: 670 AGSKGSYLNISQITAVVGQQNVGGK---RIPYGFRKRTLPHFTQDDYGPESRGF-----V 721
Query: 790 ENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAY 847
+NS+L GL P E F H R+ G + R+L+ + DL YD TVR+A
Sbjct: 722 QNSYLEGLTPSEFFFHMSGGREGLIDTACKTAETGYIQRKLVKALEDLYVGYDATVRDAQ 781
Query: 848 GNQIVQFSYNIEG 860
G ++VQF Y EG
Sbjct: 782 G-RVVQFLYGEEG 793
>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
Length = 1464
Score = 181 bits (459), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 166/594 (27%), Positives = 276/594 (46%), Gaps = 99/594 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+T DPNI L EIGIP +A L E ++ +N +++ + +
Sbjct: 323 VRGNLMGKRVDFSARTVITPDPNILLDEIGIPWSIALNLTYPEIVSEFNMKKMKKIVQNG 382
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID LE+G+ I R L DGD+VL NR PS+H
Sbjct: 383 PIHHPGAKYIIRNDG----SRIDLRFVKNLSEIKLEIGNQIERHLQDGDLVLFNRQPSLH 438
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK++ S+ +N SP++ DFDGD ++ ++PQ + + EL L+ L
Sbjct: 439 KMSMMGHIVKIMHFSTF-RMNLSATSPYNADFDGDEMNLHLPQTLEGKSELLNLLMLPNC 497
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSH-------LQMQQLQMFCPHRFLSPDIF 534
+I+QQ + ++ + QDSL + LL + ++ L + +Q+Q+ P P I
Sbjct: 498 IISQQGNKPVIGIVQDSLLGSFLLSQRNIFLDYSKFMLLLMQLQEWDGSIP----IPSII 553
Query: 535 KISKDSVWSGKQLFSMLLP------------PDFEYTFPSKD--VYISGGKLIS------ 574
K ++W+GKQ+FS+ LP + + KD V I GG+LIS
Sbjct: 554 K--PQTLWTGKQVFSLFLPKINFLRKCLSHSENEKTNISPKDTRVMILGGQLISGMIDKR 611
Query: 575 AEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
+ G+S G++ K + K +F+ Q ++ WL G +V + D +
Sbjct: 612 SVGASG-----GSIIHICWKEFGPKKTSNFISQFQTIVNSWLLFEGFSVGIGD------T 660
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLS--YEKQR 691
+ K M+ I ++ A+ +++ L++ SE + G+ L +E
Sbjct: 661 IADKKTMNNIIKTIKSAK---------IEARQVTLLNINKSE--ENFLGKILKDDFENHI 709
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
+ L+ A A + A K S N++ M GSKG+ + + Q C+G Q+
Sbjct: 710 NKILNSARDKAGSN--------AQKSLSNANNIKRMVDCGSKGSFINISQIIACVGQQNV 761
Query: 751 --SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P+ F ++ S +++ G T V+NS+++GL P E F HS+
Sbjct: 762 EGKRIPMGF---NKRSLPHFSKDNYGPETR--------GFVQNSYISGLRPDEFFFHSMG 810
Query: 809 SRDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL M ++ YD TVRN GN I++F Y +G
Sbjct: 811 GREGLIDTAIKTSETGYIQRRLSKAMENVMVEYDFTVRNCEGN-IIEFFYGEDG 863
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID+TR ++I GI+A + + L + IS G + HL ++ + ++ G+
Sbjct: 1336 IDYTRCSSNDILEIYKILGIEAVRKILIQELRNLISFDGSYVNSRHLSLLVDVMTHKGKL 1395
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + P + F +AA G DNL+G ++ G+V S+
Sbjct: 1396 MSITRHGI-----NRTDIGPIAKCSFEETIEVLYQAAAFGVCDNLKGVSGSILVGQVSSL 1450
Query: 1252 GTG 1254
GTG
Sbjct: 1451 GTG 1453
>gi|145342014|ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576317|gb|ABO94385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1395
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 164/594 (27%), Positives = 259/594 (43%), Gaps = 74/594 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNW----ERLSVCIS---- 370
GKR D R V++ DPN+++ E+G+P +A+ + E +N N ER+ ++
Sbjct: 372 GKRVDFSARTVISPDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAKHPG 431
Query: 371 --FRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
F G + + G +I L+ GDI+ R L DGDI+L NR PS+H S++A
Sbjct: 432 ANFVKFASGGMQYLKYGDRRKI--ASELKFGDIVERHLHDGDILLFNRQPSLHKMSIMAH 489
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+++ ++ N C+P++ DFDGD ++ + PQ AR E +L+ + L ++G
Sbjct: 490 KARIMECRTL-RFNECVCTPYNADFDGDEMNIHCPQTEEARAEAMQLMGVQHNLCTPKNG 548
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGK 545
L++ QD LTAA LL Q L + LS D+ + +W+GK
Sbjct: 549 EILIAATQDFLTAAFLLTIKDAFFDRSQFGSLVAYMGDALLSVDLPTPAILKPIELWTGK 608
Query: 546 QLFSMLLPPD-----------FEYTFPSKD---------VYISGGKLISAE-GSSWL-RD 583
Q+FS+L+ P E + KD V I ++IS + G + L
Sbjct: 609 QVFSVLIRPKASDHIYVNLEVAEKLYNKKDKTMCPDDGYVCIQNSEIISGQLGKATLGSG 668
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
+ LF L Y + + + ++ WL RG ++ + D+ A+ + K E
Sbjct: 669 NKSGLFYVLNIEYGAEAAANAMNRLAKLSARWLGTRGFSIGIDDVSPAAELSAEKGRRIE 728
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
Y TC+ + + L + ++E T L+ E L A A + A
Sbjct: 729 DGY------RTCDERIASYEKGTLPLQAGCNAEET--LEAEVLGVLSAVREAAGNACLKA 780
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ N+ L M GSKG+ + + Q C+G Q A R P
Sbjct: 781 L---------------PRRNAPLIMALCGSKGSTINISQMIACVGQQ---AVGGSRPPDG 822
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
+ + R G+ T AK + V NSF +G+ P E F H++ R+
Sbjct: 823 FAERSLPHFRRGEKTPAAKGF-----VANSFFSGMRPTEFFFHTMAGREGLVDTAVKTAE 877
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD-QPV 873
G ++RRLM + DL YDGTVRN+ G IVQ Y +G E D QP+
Sbjct: 878 TGYMSRRLMKALEDLSLQYDGTVRNSMGG-IVQLRYGDDGMEPTMMESEDAQPI 930
Score = 44.3 bits (103), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 44 VTNPRLGLPNPTN-ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PR+G + EC++C + C GHFG+IK + H + +I +L +C C
Sbjct: 73 ILDPRMGTTDKRGGECATCRG-NMVDCAGHFGYIKLELPVFHIGYFKNIISVLQCVCKNC 131
Query: 103 KTI 105
I
Sbjct: 132 SRI 134
>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
boomerangus]
Length = 1024
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 266/582 (45%), Gaps = 82/582 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + ++G+P +A + E + +N E+L + E
Sbjct: 279 LMGKRVDFSARTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPYNIEKLQEMVQNGPNEH 338
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L +G + R + D D+V+ NR PS+H S+
Sbjct: 339 PGAKYVIRDSG----ERIDLRYSKRGGDIPLRIGYRVERHMLDDDVVIFNRQPSLHKMSM 394
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E+TE+ + KQ+++
Sbjct: 395 MGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHLPQSEETRAEVTEICMVPKQIVSP 453
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS ++ + QD+L A ++ + LL + + L M P + P + +WSG
Sbjct: 454 QSNMPVMGIVQDTLCAINIFTKRDTLLQYDFVMNLLMTIPDWDGIVPTPCILKPQPLWSG 513
Query: 545 KQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
KQ++SM++P PD EYT+ S + I G+L+S + + G +
Sbjct: 514 KQIYSMVIPKGVNCHRYNSTHPDNEYTWCSPGDTRIIIENGELLSG---ALCKRTVGAVD 570
Query: 590 QYLIKRYR-----DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
LI R D F Q+++ W G +V + D +A S + +
Sbjct: 571 SGLIHVIRNELGPDYAKKFFGGTQKLVNYWFLQTGFSVGIGDT-IADDSTMQTV------ 623
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR--SLQGEHL--SYEKQRSAALSQASV 700
++ + +M +D++ R L G L ++E + + L++A
Sbjct: 624 ------------GDIIRECYMRVDELIRDAQEDRLERLPGMTLKETFESKVNGELNRARD 671
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
A K V QN + N++ M +GSKG+ + + Q + +G Q+ R P
Sbjct: 672 QAGKTV----QNRLKEC----NNVRRMVVSGSKGSYINVSQMTASVGQQNVEGK---RIP 720
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D + ++ + VENS+L GL P E + H++ R+
Sbjct: 721 FGFKNRTLPHFSKDDYSPQSRGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTAVKT 775
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ I+ F Y +G
Sbjct: 776 AETGYIQRRLVKALEDIMVHYDGTVRNSLGS-IIDFVYGEDG 816
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 157/581 (27%), Positives = 265/581 (45%), Gaps = 77/581 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR + R V+TGDP ++L E+G+P +A L ER+ +N LS +
Sbjct: 350 LRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNG 409
Query: 373 LLE-KGELYVCRKGG----LVRIRRID-ALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
+ G YV R G L RR D AL+ G I+ R L DGD VL NR PS+H S++
Sbjct: 410 PNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYVLFNRQPSLHKMSMM 469
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
+ +K++ S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+++ Q
Sbjct: 470 SHRIKLMDYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGK 545
+ + ++ + QD+L LL + Q+QQ+ ++ + P + WSGK
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYHQVQQVLLWVADWDGVVPMPCILKPKPYWSGK 588
Query: 546 QLFSMLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
Q+ SM +P F KD VYI G+++ + + ++I
Sbjct: 589 QILSMCIPKGIN-VFLDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHII 647
Query: 594 KRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
R + V+ F Q V+ WL G ++ + D + + K D I + A+
Sbjct: 648 FREKGPVICKRFFSGVQRVVNFWLLHNGFSIGIGD------TVADKATTDSINQTISAAK 701
Query: 652 DTCNFQQLMVDSHMNFLMSAKDS----ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
M+++ A+ E+ +L+ S+E + L+QA D H
Sbjct: 702 SAV----------MDYIKYARHDWLKVEAGMTLRE---SFEANVNRVLNQARDDVGNHAE 748
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPH 761
+ + N++ M +GSKG+ + + Q S C+G Q P FR PH
Sbjct: 749 GSLPDF--------NNVKQMVVSGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPH 800
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D T ++ + VENS+L GL E F H++ R+
Sbjct: 801 ---------FTKDDFTPESRGF-----VENSYLRGLTAQEFFFHAMAGREGLIDTAVKTA 846
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ N ++QF+Y +G
Sbjct: 847 ETGYIQRRLVKALEDVMVCYDGTVRNST-NNVIQFAYGEDG 886
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
+ +++PRLG + +C +CG + + C GHFG I + H +L + K+L +C
Sbjct: 54 IGGLSDPRLGTLDRNYKCQTCG-EGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCF 112
Query: 101 KCKTIRKE----------RQKGAGSSRKEQPRVCKYCVR 129
C ++ + + GS ++ RV +YC +
Sbjct: 113 HCGKLKADVVTDPVFDQIVKATRGSRKRRFQRVWEYCSK 151
>gi|284162089|ref|YP_003400712.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
gi|284012086|gb|ADB58039.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus profundus DSM
5631]
Length = 871
Score = 181 bits (459), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 263/574 (45%), Gaps = 66/574 (11%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR + R V++ DP I + E+G+P ++AE L + + N E I R
Sbjct: 310 GKRVNFSARTVISPDPCISINEVGVPKEIAEELTVPIYVTERNIEEAREYI-LRTEHPKA 368
Query: 379 LYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R G RIR +D LE G I+ R L DGDIVL NR PS+H S++A V
Sbjct: 369 NYVIRPDGR-RIRVMDTNREELAEKLEPGWIVERQLKDGDIVLFNRQPSLHRMSIMAHYV 427
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VLP +NP C P++ DFDGD ++ ++PQ+I A+ E L+A+ + +++ + G
Sbjct: 428 RVLP-GKTFRLNPAVCPPYNADFDGDEMNLHVPQSIEAQAEAKILMAVQQHILSPRFGGP 486
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQ-MQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFS 549
++ D ++ +LL L S + M L F P + K K W+GKQ+FS
Sbjct: 487 IIGGIHDHISGLYLLTRGEKLFSKEEVMYLLGPFDLKELPEPKVVKDGK-PYWTGKQIFS 545
Query: 550 MLLPPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWLRDYEGNLFQY 591
+L PD F ++ D Y I G+LI + ++G +
Sbjct: 546 AIL-PDVTLEFKAEICKGCNECKKESCEYDAYVIIKNGELIRGTIDEKAVGAFKGIIIDE 604
Query: 592 LIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++++Y + V F+ + + + G T+ + D L + ++ + EI
Sbjct: 605 IVRKYGNDVAKKFIDDMTHLAIRAIMLTGFTIGIDDEDLPEEAIAQ---VKEII------ 655
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
++ ++D + + RSL+ E L R L +A A +
Sbjct: 656 ---AEAEKKVIDLIKAYREGNLEPMPGRSLE-ETLEMMIMRE--LGRARDMAGR------ 703
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
+A K+ +N + M +G++G++L L Q S C+G Q S+ + +
Sbjct: 704 --VAEKFLGYNNPAVIMAVSGARGSMLNLTQMSACIG-QQSVRGERINRGYTYTNRTLPH 760
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRR 827
+ GD + A+ + VE+S+ GLNP+E F H++ R+ D A + G L RR
Sbjct: 761 FKPGDLSARARGF-----VESSYKRGLNPIEFFFHAMGGRE-GLVDTACRTSISGYLQRR 814
Query: 828 LMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
++ ++D+ YDGTVR +VQF Y +G
Sbjct: 815 MINALQDIKVEYDGTVREQTSETVVQFRYGEDGV 848
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG+ +P C +CG K + C GHFG I+ ++H + IAKLLN+ C +C
Sbjct: 44 LMDPRLGVIDPGLRCRTCGGKAGE-CPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECG 102
Query: 104 TIR 106
+R
Sbjct: 103 RLR 105
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 153/582 (26%), Positives = 256/582 (43%), Gaps = 83/582 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + ++G+P +A L E + N RL + E
Sbjct: 276 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIASNLTYPEMVTRHNVNRLQEAVERGPEEH 335
Query: 377 -GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G + + +L+ G I+ R L D D+++ NR PS+H S++
Sbjct: 336 PGAKYVIRPDGTRVDLRVTGVTGAPSLQPGWIVERHLMDDDVIIFNRQPSLHKMSMMGHR 395
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ++ AR E+ +L + Q+++ QS +
Sbjct: 396 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVSPQSNK 454
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQ 546
++ + QD+L + + L M+ P P I K +W+GKQ
Sbjct: 455 PVMGIVQDTLCGITKFTRRDTFMDRAMVMNLLMWVPGWDGNMPPPAIVK--PKPMWTGKQ 512
Query: 547 LFSMLLPP----DFEYTFPSKD----------VYISGGKLISA-EGSSWLRDYEGNLFQY 591
+ S+++P F T P + V + G+L++ + G L
Sbjct: 513 IMSLIIPKVNAVTFHSTHPDGETDLLSPGDTRVIVEDGELVAGIVCKKTVGTAAGGLVHV 572
Query: 592 -LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++ + L Q ++ WL G +V + D + L++++ + R+
Sbjct: 573 SWMEHGPEAAKALLNGCQTIVNYWLLHTGFSVGIGDTVADDETTD---LINKMIFDARQ- 628
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFW 708
+N ++ S+ G L ++E + L++A A
Sbjct: 629 -------------RVNEIIGEAQSDKLERQTGMTLRETFEANVNRTLNEAVNKA------ 669
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHE 762
A K N++ M AGSKG+ + + Q S C+G Q+ P F++ PH
Sbjct: 670 --GGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHF 727
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GLNP E F H++ R+
Sbjct: 728 VK----------------DDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKT 771
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRNA GN I+QF Y +G
Sbjct: 772 AETGYIQRRLVKALEDIMVKYDGTVRNAQGN-IIQFLYGEDG 812
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 157/577 (27%), Positives = 263/577 (45%), Gaps = 77/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR + R V+TGDP ++L E+G+P +A L ER+ +N LS + +
Sbjct: 355 LMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDY 414
Query: 376 KGELYVCRKGG----LVRIRRID-ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
G YV R G L RR D AL+ G I+ R L DGD +L NR PS+H S+++ +
Sbjct: 415 PGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMMSHRI 474
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
K++ S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+++ Q+ +
Sbjct: 475 KLMDYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKP 533
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFS 549
++ + QD+L LL + Q+QQ+ ++ + P + WSGKQ+ S
Sbjct: 534 VMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGKQILS 593
Query: 550 MLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR 597
M +P F KD VYI G+++ + + ++I R +
Sbjct: 594 MCIPKGIN-VFLDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHIIFREK 652
Query: 598 DKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
V+ F Q V+ WL G ++ + D + + K D I + A+
Sbjct: 653 GPVVCKRFFSGVQRVVNFWLLHNGFSIGIGD------TVADKATTDSINQTITAAKAAV- 705
Query: 656 FQQLMVDSHMNFLMSAKDS----ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
M+++ A+ E+ +L+ S+E + L+QA D H +
Sbjct: 706 ---------MDYIKYARHDWLKVEAGMTLRE---SFEANVNRVLNQARDDVGNHAEASLP 753
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSC 765
+ N++ M AGSKG+ + + Q S C+G Q P FR PH
Sbjct: 754 DF--------NAVKQMVVAGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPH---- 801
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D T ++ + VENS+L GL E F H++ R+ G
Sbjct: 802 -----FTKDDFTPESRGF-----VENSYLRGLTAQEFFFHAMAGREGLIDTAVKTAETGY 851
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ N ++QF+Y +G
Sbjct: 852 IQRRLVKALEDVMVCYDGTVRNST-NNVIQFAYGEDG 887
Score = 48.5 bits (114), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
+ +++PRLG + +C +CG + + C GHFG I + H +L + K+L +C
Sbjct: 54 IGGLSDPRLGTLDRNYKCQTCG-EGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCY 112
Query: 101 KCKTIRKE----------RQKGAGSSRKEQPRVCKYCVR 129
C ++ + + GS ++ RV +YC +
Sbjct: 113 HCGKLKADVVTDPVFDQIVKATRGSRKRRFQRVWEYCSK 151
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 224/961 (23%), Positives = 396/961 (41%), Gaps = 179/961 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIGA-VSEVT-----------NPRLGLPNPTNECSSCGAKDRK 67
+ I + E +++SV E G SE T +PR G+ + + C +C A +
Sbjct: 19 VQFSILSPDEIKRMSVTEGGIRYSETTEGGRPKLQGLMDPRQGVVDRLSRCQTC-AGNMH 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAK------------LLNSICPKCKTIRKERQKGAGS 115
C GHFG I+ + H F++ + K L+++ PK K I K G
Sbjct: 78 DCPGHFGHIELSKPVFHVGFIAKVVKVLRCFCFYCSKLLVDNNHPKIKEILI---KSKGL 134
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY-- 172
RK V + C + + M K + DL+ + E D+ K Y
Sbjct: 135 PRKRLGHVYELCKGKKVCEGGEEMDHKFDA-DLAQRED---EADQPAKPKGHGGCGRYQP 190
Query: 173 ------------WGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDA 220
W + D+Q++ + +L+ ++V + K + S E I+ D
Sbjct: 191 SIRRAGLELTAEWKNVNEDSQEK-------KIILTAERVLEIFKRI--SDEESLIIGMDP 241
Query: 221 PFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------D 267
+ + PV P R V + + + D+ T L +V + +
Sbjct: 242 QYTRPDWMIVTVLPVPPLAVRPAVVMNGSAKNQ----DDLTHKLADIVKASNQLKRNEQN 297
Query: 268 IELSHLVQDCLKISKLHL----DKSS----RKDSAEVRQKKNIDISNSSGLRWIKDVVLG 319
+H++ + K+ + H+ D R R K+I I+ ++G
Sbjct: 298 GAAAHIIAEDTKMLQFHVCTMVDNEQPGLPRAMQKSGRPLKSIKQRLKGKEGRIRGNLMG 357
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGE 378
KR D R V+T DPN+ + ++G+P +A+ L E + +N +R+ + + G
Sbjct: 358 KRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPELVTPFNIDRMHELVKRGNNQYPGA 417
Query: 379 LYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
Y+ R G RID L+ G + R + D D V+ NR P++H S++
Sbjct: 418 KYIIRDNG----DRIDLRFHPKASDLHLQCGYRVERHIRDNDYVIFNRQPTLHKMSMMGH 473
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+K+LP S+ +N +P++ DFDGD ++ ++PQ++ + E++E++ + +Q+I QS
Sbjct: 474 RIKILPWSTF-RLNLSVTTPYNADFDGDEMNLHVPQSLETKAEISEIILVPRQIITPQSN 532
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGK 545
+ ++ + QDSL A + V L + L M+ P + P I K +W+GK
Sbjct: 533 KPVMGIVQDSLAAVRKFTKRDVFLEKEDVMILLMWLPSWDGKMPQPCILK--PKPLWTGK 590
Query: 546 QLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYE 585
QL S+++P PD E T P K V I G+++S L
Sbjct: 591 QLMSLIVPGNVNLVRTHSTHPDEEDTGPYKWISPGDTKVLIENGEVLSGILCKKTLGTSS 650
Query: 586 GNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G+L + ++ Y Q V+ +L + G T+ + D + + D+I
Sbjct: 651 GSLGHVVFVEMGHEIAKEFYGNIQTVVNNYLLIEGHTIGMGDCIADAQT------YDDIQ 704
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE---HLSYEKQRSAALSQASVD 701
+R+A+ + +++ +H + L + + ++ + + L+ + ++ + +Q S+
Sbjct: 705 NTIRKAKQ--DVIEVIEKAHNDELEPSPGNTLRQTFENQVNRLLNDARDKTGSSAQKSLS 762
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
F N+ AM AGSKG+ + + Q C+G Q+ P FR
Sbjct: 763 EF------------------NNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFR 804
Query: 759 ---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 805 HRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGL 848
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ M + YDGTVRN+ + +VQ Y +G E D
Sbjct: 849 IDTAVKTAETGYIQRRLIKAMESVMVRYDGTVRNS-NDALVQLRYGEDGLDGAHVEFQDM 907
Query: 872 P 872
P
Sbjct: 908 P 908
>gi|327242111|gb|AEA40834.1| RNA polymerase II largest subunit [Monocercomonas sp. ATCC 50210]
Length = 1019
Score = 181 bits (458), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 172/640 (26%), Positives = 283/640 (44%), Gaps = 75/640 (11%)
Query: 256 HLKKMVDYRGRDIELSHLVQDCLKISKLHL------DKSS--RKDSAEVRQKKNIDISNS 307
HLKK++ + + QD +++ + H+ DK + R + R K I
Sbjct: 211 HLKKLIQDNAQQVAQ----QDAIEMLQYHISTYLINDKPALQRATTKNGRPIKAISQRLK 266
Query: 308 SGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV 367
I+ + GKR + R V++ DP+I + ++G+P ++A+ L E + N E L
Sbjct: 267 GKEGHIRGHLSGKRVNFSARSVISPDPSISIDQVGVPLEIAKVLTFPEVVTPRNREYLQQ 326
Query: 368 CI-SFRLLEKGELYVCRKGG----LVRIRRIDALELGD--IIYRPLTDGDIVLINRPPSI 420
+ + ++G Y+ G L AL L D I+ R L D DIV+ NR PS+
Sbjct: 327 LVYNGPDAQQGANYIITPQGIRINLAVTEERSALHLNDNAIVERHLRDDDIVIFNRQPSL 386
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ ++P S +N +P++ DFDGD ++ ++PQ+ AR E+ ++ +
Sbjct: 387 HKMSMMGHRAYLMP-GSTFRLNLCDTTPYNADFDGDEMNLHVPQSQTARAEVKHIMFVPN 445
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR-FLSPDIFKISKD 539
Q+I+ Q+ + ++ L QD+L A L+ L+ Q+ L M+ R + P +
Sbjct: 446 QIISPQANKPIIGLVQDALLACRLMTLRDTFLNRNQVMNLMMWIKKRDVVLPPPCILKPQ 505
Query: 540 SVWSGKQLFSMLLPPDFEYTFPS------------KDVYISGGKLISA-EGSSWLRDYEG 586
+WSGKQ+FS+ LP F + K V I GKL++ + E
Sbjct: 506 QLWSGKQVFSLFLPEINHDAFSADNKDDSWLPVDDKRVIIRDGKLLAGILDLKTVAKSEK 565
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+L +I + +D DFL Q V+ WL +RG ++ + D + + + + E
Sbjct: 566 SLVHVVINSWDKDIARDFLNQTQLVVNNWLELRGFSIGIIDCIASPRTLEK---VSEQLG 622
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
L+++ D L + M+ K++ S RS S D K+
Sbjct: 623 DLKKSVDEITHSALNGTLKIQPGMTLKETFE---------SEVNTRSNDFINKSGDVVKN 673
Query: 706 --VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
FW NSL+ M AGSKG+ + + Q C+G Q+ R P+
Sbjct: 674 DSRFW-------------NSLMQMVAAGSKGSKINISQILACVGQQNVEGK---RVPNGF 717
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DL 820
D AK + E+S++ GL P E F HS+ R + D A
Sbjct: 718 KNRTLPHYFKDDVGLEAKGF-----CEHSYIQGLTPPEFFFHSMGGR-TGIIDTACKTSD 771
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL FM C YDGT+RN+ N+++QF Y +G
Sbjct: 772 TGYIQRRLCKFMESHCVQYDGTIRNSL-NEVIQFLYGTDG 810
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 181 bits (458), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 158/593 (26%), Positives = 263/593 (44%), Gaps = 92/593 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER-LSVCISF 371
I+ ++GKR D R V+T DPN+ + ++G+P +A+ + E + +N ++ L +
Sbjct: 343 IRGNLMGKRVDFSARTVITPDPNLGIDQVGVPRSIAQNMTFPEIVTPFNIDKMLELVRRG 402
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 403 NSQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQPTLH 458
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q
Sbjct: 459 KMSMMGHRVKVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 517
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V L QM L M P + P I K
Sbjct: 518 IITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPQPCILK--P 575
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 576 KPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDNGPYKWISPGDTKVMVEHGELVMGILCK 635
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L +V Y Q V+ WL + G ++ + D +
Sbjct: 636 KTLGTSAGSLLHICFLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL-- 693
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 694 ----EIQKAIKKAKE--DVIEVIQKAH-NMDLEPTPGNTLRQ------TFENQVNRILND 740
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 741 ARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 792
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E F H++
Sbjct: 793 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGG 836
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 837 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDG 888
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRHSRCQTC-AGNMS 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG I + H F++ K+L +C C +
Sbjct: 75 ECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKL 112
>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
strain Muguga]
gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
parva]
Length = 1681
Score = 181 bits (458), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 225/918 (24%), Positives = 390/918 (42%), Gaps = 156/918 (16%)
Query: 26 TDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHP 85
T TE + + + G ++++ R+G +P + C +C + D K C GHFG I + H
Sbjct: 41 TLTELYREGIPQTGGLNDL---RMGTTDPRHICLTC-SMDLKYCPGHFGHIVLAKPMYHY 96
Query: 86 YFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKLSSK 145
F+ + K+L +C C + K PRV + +++P+ + R S+
Sbjct: 97 GFMMTVLKILRCVCFNCSKLLLN---------KNDPRV-QLILKSPSSSF---RLNHLSE 143
Query: 146 DLSGKTAIIVEIDEKLSKKNKKLPDDYWG------FIPFDAQQ----EENSVKPN--RKV 193
S ++ + P + I F +Q EE+ + N ++
Sbjct: 144 LCSASRTCRIDTQTNTKIEGCGYPQPSYTKEGPNLMIQFSQKQREILEESDEQCNDIKRP 203
Query: 194 LSCKQVSYLLKDVDPSIRE--EFILSKDAP---FLKCFPVTPNNHRVTEVPHAFSHEK-- 246
L+ ++ +L+ + + F+ + P L+ PV P R V + +
Sbjct: 204 LTPEEAFKVLRGITLEDMKCLGFVPERSQPCWLILQVLPVPPPAVR-PYVQYGSDRSEDD 262
Query: 247 ---KLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDS-----AEVRQ 298
KL T +L K D R H++Q+ ++ + H+ D A R
Sbjct: 263 LTLKLLDVLKTNNLIKRHDKRA---TAPHIIQEMCQLLQFHITTLFDNDIPGMPIASTRS 319
Query: 299 KKNIDISNSSGLRW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
KK I S + L+ ++ ++GKR D R V+TGDPNI + IG+P +A L
Sbjct: 320 KKPIK-SIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFC 378
Query: 355 ERLNSWNWERLSVCISFRLLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLT 407
E +NS N+E L + + G Y+ R G L +++ L+L G + R +
Sbjct: 379 ETVNSLNYESLRKKVETGPHDWPGAKYIIRDDGTRFDLRHVKKSSELQLEYGYKVERHMQ 438
Query: 408 DGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIG 467
DGD +L NR PS+H S++ K+LP S+ +N +P++ DFDGD ++ ++ Q
Sbjct: 439 DGDYILFNRQPSLHKMSIMGHRAKILPYSTF-RLNLSVTTPYNADFDGDEMNLHLVQTHE 497
Query: 468 ARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH- 526
R E+ L+ + KQ+++ Q R ++ + QDSL A + L+ ++ L ++ P+
Sbjct: 498 TRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSLLIWIPYW 557
Query: 527 --RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPS---------------------- 562
+ P IF ++W+GKQ+ S+LL + +
Sbjct: 558 DGKLPQPAIF--FPKNLWTGKQVISVLLTFNQSQGITNINLIRDGTIKLDKDNLNCSIND 615
Query: 563 ------KDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWL 615
K+ +ISG G S G+L L +K DFL Q+V+ W
Sbjct: 616 SRVIIRKNEHISGIICKKTVGCS-----SGSLIHILWHEAGPEKCRDFLTTLQKVVNNWF 670
Query: 616 SVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDS- 674
G TVS SD+ C + ++++ L +++ Q+L++ + L
Sbjct: 671 LQIGFTVSCSDI------CCSESTLNKVSRILDKSKK--EVQKLVLQAQKGKLKCQPGKS 722
Query: 675 --ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGS 732
ES + + L+ +++S ++ +S+ NL+ N++L+M +GS
Sbjct: 723 LFESFEARVNKELNDAREQSGSIVASSL-----------NLS-------NNILSMVNSGS 764
Query: 733 KGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPS 786
KG+ + + Q C+G Q+ P FR PH + Y P
Sbjct: 765 KGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHFIK----------------HDYGPE 808
Query: 787 A--VVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGT 842
+ V NS+L+GL P E F H++ R+ G + RRL+ M D+ YD T
Sbjct: 809 SRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYVQRRLIKAMEDVMVQYDRT 868
Query: 843 VRNAYGNQIVQFSYNIEG 860
RN G +I+QF Y +G
Sbjct: 869 ARNGNG-EILQFLYGEDG 885
Score = 49.3 bits (116), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D+T++ +++ +GI+A + L + + IS G + HL ++ + ++ G
Sbjct: 1336 VDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYL 1395
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + P ++ F + + AA G VD+L+G + + G++
Sbjct: 1396 MSITRHGI-----NRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTENVIVGQLSPY 1450
Query: 1252 GTGGHFDII 1260
GTG FDI+
Sbjct: 1451 GTGA-FDIM 1458
>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
bovis]
Length = 1746
Score = 181 bits (458), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 169/593 (28%), Positives = 259/593 (43%), Gaps = 97/593 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D C R V+TGDPN+ + IG+P +A L SE + N E L + E
Sbjct: 341 LMGKRVDFCARTVITGDPNLPVDVIGVPKSIAMTLTFSETVTPLNLENLRKKVEMGPHEW 400
Query: 376 KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G Y+ R G L ++R L+L G + R L DGD +L NR PS+H S++
Sbjct: 401 PGAKYIVRADGSRFDLRHVKRASDLQLEYGYRVERHLQDGDYILFNRQPSLHKMSIMGHR 460
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KVLP S+ +N SP++ DFDGD ++ ++ Q R E+ L+ + KQ+++ Q R
Sbjct: 461 CKVLPYSTF-RLNLSVTSPYNADFDGDEMNLHLAQTHETRAEVKHLMLVPKQIVSPQGNR 519
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
++ + QDSL L+ + L M+ P+ + P IF +W+GKQ
Sbjct: 520 PVMGIVQDSLLGISKFTRRDCFLTKDMLMNLLMWIPYWDGKLPQPCIFH--PVPLWTGKQ 577
Query: 547 LFSMLLPPD-----------------FEYTFP-----------SKDVYISGGKLISAEGS 578
+ S++L D E P SK+ ++SG G+
Sbjct: 578 VVSIMLTFDQMNSLTCINLMRNSAVALENDNPYCSANDSKVIISKNEHLSGIICKKTVGT 637
Query: 579 SWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
S G+L L D+ DFL Q+V+ WL G TVS SD+ +AS S +
Sbjct: 638 S-----SGSLIHVLWHEAGPDRCKDFLTTLQKVVNNWLVYNGFTVSCSDI-MASESTLTQ 691
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ EI R ++ L + ES + + L+ +++S ++
Sbjct: 692 VA--EILE--RSKKEVQRLVGLAQRGKLKCQPGKSLFESFEARVNKELNEAREQSGTIAA 747
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
S+D + N++LAM +GSKG+ + + Q C+G Q+ P
Sbjct: 748 KSLD------------------ERNNILAMVNSGSKGSTINISQIIACVGQQNVEGKRVP 789
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + V NS+L+GL P E F H++
Sbjct: 790 FGFRDRSLPHFIK----------------HDYGPESRGFVSNSYLSGLTPQEMFFHAMGG 833
Query: 810 RDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRLM M D+ YD TVR+ G I+QF Y +G
Sbjct: 834 REGVIDTACKTSETGYVQRRLMKAMEDIMVHYDKTVRSG-GGDILQFLYGEDG 885
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/355 (19%), Positives = 139/355 (39%), Gaps = 67/355 (18%)
Query: 940 ALEVKNHLECLMLSDIVSTSMIIYSPQTGS--------------------MKHFSPWICH 979
A +++ LE L +V+ S +IY P M PW+
Sbjct: 1149 AKDMQTRLEYTTLDKVVALSQVIYDPNVSQTIVPKDYAWVREYYEFPDEDMNRLGPWVLR 1208
Query: 980 FHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAF 1039
+ ++M L I+D +Y++ SN + I+ + ND
Sbjct: 1209 IQLSNKVMTDKRLTMKEIVDRIYQE----------------FSNDEIDCIHTD-DNNDEL 1251
Query: 1040 CVTV------MIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASK 1093
+ + M V+ + E +Q ++ L+ ++G +I KV + +++A
Sbjct: 1252 VLRIRVKYSNMDVDQQNMGENEGEFLQRFMSQVLVNVKLRGVSKITKVYM----REEART 1307
Query: 1094 SHDDSFGELYLRVSM----SGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAY 1149
++++ G + RVS + C++ + S + +D +S ++I
Sbjct: 1308 KYNETNGR-FERVSQWVLDTDGCNLEDVLS---------IPCVDAQKSISNDISEIFHVL 1357
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A L L + IS G + HL ++ + ++ G + + GL + +
Sbjct: 1358 GIEAARMALLRELRAVISFDGSYVNYRHLSLLCDVMTQKGHIMSITRHGL-----NRADR 1412
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGE 1264
P V+ F + + AA +D L+G + + G++ +GTG FDI+ E
Sbjct: 1413 GPLVKCSFEETLEALVDAAVFAELDLLKGVTENVMLGQLCPMGTGS-FDIMIDDE 1466
Score = 40.4 bits (93), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 26 TDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHP 85
T TE + V G ++++ R+G + + C +C D K C GHFG I + H
Sbjct: 41 TQTELYREGVPHTGGLNDL---RMGTTDARHNCLTC-FMDVKYCTGHFGHITLAKEMYHC 96
Query: 86 YFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRV 123
L+ + K+L +C C ++ + KE PRV
Sbjct: 97 CLLTSVLKVLRCVCFNCSSLLCD---------KEDPRV 125
>gi|67612875|ref|XP_667260.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis
TU502]
gi|54658380|gb|EAL37032.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium
hominis]
Length = 1869
Score = 181 bits (458), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 178/664 (26%), Positives = 287/664 (43%), Gaps = 111/664 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPNI++ E+ +P +A++L ER+N+ N + L ++ + G
Sbjct: 354 GKRVDFSGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPG 413
Query: 378 ELYVCRKGG-----LVRIRRI--DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV + G RR+ + LE+GDI+ R + GDIVL NR PS+H S+++ V
Sbjct: 414 ACYVYKSNGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKV 473
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
V+P + N C+P++ DFDGD ++ ++PQ AR E L+ L L+ ++G
Sbjct: 474 VVMPWRTF-RFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNGEP 532
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC--------PHRFLSPDIFKISKDSVW 542
L++ QD L ++L + L+ Q Q +C P P I K + +W
Sbjct: 533 LIAATQDFLLGMYVLTGRDIFLTRDQFSQ---YCCHFSNGQIPMELPPPTILKPVE--LW 587
Query: 543 SGKQLFSMLLPP--------DFEYTFPSKD----------------VYISGGKLIS-AEG 577
+GKQ+F+M+L P D + +D V + +L++ A G
Sbjct: 588 TGKQVFNMILRPNSNENERIDVSFELKERDYDSKSDLKDLCPNEGYVVVRHSELLAGAIG 647
Query: 578 SSWL--RDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL-ASHSC 634
L EG F L++ K + + + +L+ +GMT+ + D+ A
Sbjct: 648 KKVLGGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTPNAELLV 707
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
++K L+++ G + QD N SYEK +
Sbjct: 708 AKKNLLED---GYQRVQDEIN------------------------------SYEKGKLTP 734
Query: 695 LSQASVD-----AFKHVFWDIQNLAYKYG----SKDNSLLAMFKAGSKGNLLKLVQHSLC 745
S++ K + DI+N A K N L M+ +G+KG L+ + Q C
Sbjct: 735 HPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMVAC 794
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
+G Q+ + NR C V NSF +GL P E F H
Sbjct: 795 VGQQNVAG-------QRIQNGFTNRTLPHFKMNCVDGR-SRGFVGNSFFSGLQPDEFFFH 846
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
+++ R+ G + RRL+ + DLC YD TVR + G QI+QF Y +G +
Sbjct: 847 TMSGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDG-QIIQFIYGDDGLNP 905
Query: 864 PTGEIGDQPV--GSL-----SACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSN 916
E + V G L S + Y + ++ LE PL N N+ E K+SN
Sbjct: 906 MLMEEKLELVNFGKLFKHIYSQTKVHSNFYFLFNNYLNFLENQPLKNDLNISE-NPKQSN 964
Query: 917 ADQT 920
+ ++
Sbjct: 965 SKRS 968
Score = 40.8 bits (94), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + RLG +CSSCG K C GH+G+I + H + + +L IC C
Sbjct: 76 VLDSRLGAHRADAQCSSCGGT-LKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSC 133
>gi|397135822|gb|AFO11406.1| RNA polymerase I, partial [Ascoidea rubescens]
Length = 872
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 158/590 (26%), Positives = 270/590 (45%), Gaps = 65/590 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ +
Sbjct: 149 VRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARILTYPEIVTPYNIHRLTEYVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G +V R G RID L+ G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKHVIRDTG----DRIDLKYHKKAGDIQLQYGWRVERHLMDDDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ K++P S+ IN SP++ DFDGD ++ ++PQ+ R EL LVA+ Q
Sbjct: 265 KMSMMCHRAKIMPYSTF-RINLSVTSPYNADFDGDEMNLHVPQSAETRAELQNLVAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + ++ + QD+L + + + + Q+ Q+ + + P +
Sbjct: 324 IVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMQICYWVKDWNGIMPPPAILKPKP 383
Query: 541 VWSGKQLFSMLLPP-------DFEYTF--PSKD--VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQL S+ +P D + T P+ D + I+G + + G L
Sbjct: 384 LWTGKQLLSLAIPEGIHLLRFDEKTTLLSPNDDGMLIINGEIMFGIVNKKTVGATNGGLI 443
Query: 590 QYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ K D Q+++ WL G ++ + D + + M +I +
Sbjct: 444 HTVMREKGSKACADLFGNIQKIVNYWLLHNGFSIGIGDTIADADT------MKKITTTIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ Q L++D+ N L + E +L+ S+E + S L+QA DA
Sbjct: 498 EAKQKV--QDLILDAQANRL----ELEPGMTLRE---SFESKVSRVLNQARDDAGHCAQM 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
+++ L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 549 NLKEL--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFTKDDFSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSL 876
RL+ + D+ YDGT RN+ G I+QF Y +G ++ QP+ ++
Sbjct: 653 RLVKALEDIMVHYDGTTRNSVG-AIIQFIYGEDGLDAT--QVEKQPIDTI 699
>gi|427788425|gb|JAA59664.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1390
Score = 180 bits (457), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 264/628 (42%), Gaps = 101/628 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--SFRLLEK 376
GKR D R V++ DPN+++ E+G+P VA+ L ER+ N E + I +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPG 417
Query: 377 GELYVCRKGGLVRIRR-------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
CR G+ R R L LGD++ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFLECRGTGIKRYLRYGNREQLAQQLRLGDMVERHLKDGDVVLFNRQPSLHKLSIMAHV 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KVLP N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 478 AKVLP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGTRANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ--MFCPH------RFLSPDIFKISKDSV 541
L++ QD +T +L+ + V L ++ QL M P I K +
Sbjct: 537 PLIAAIQDFITGGYLITQKDVFLDRIKACQLASCMLAGKDTNMKVELPPPAILK--PVCL 594
Query: 542 WSGKQLFSMLLPPDFEYTF-----PSKDVYISGGKLISAEGSSWLRDYE----------- 585
W+GKQ+FS+++ P Y SG ++ + +R+ E
Sbjct: 595 WTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGEEMCVNDAYVLIRNSELLSGTMDKGTM 654
Query: 586 -----GNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLY----------- 628
N+F L++ Y D+ D ++ + ++ RG ++ + D+
Sbjct: 655 GSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGDVTPGAGLIKAKQD 714
Query: 629 LASHSCSR-KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
L S +R + + ++ G +AQ CN ++ + + L +D L+ H
Sbjct: 715 LVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVCLKELSVVRDHAGKACLRELH--- 771
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
K NS L M GSKG+ + + Q C+G
Sbjct: 772 --------------------------------KTNSPLIMAVCGSKGSFINISQMIACVG 799
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q A R P+ + D + A+ + VE+SF +GL P E F H++
Sbjct: 800 QQ---AISGHRVPNGFEDRSLPHFEKHDRSPQARGF-----VEDSFYSGLTPTEFFFHTM 851
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPT 865
R+ G + RRL+ + DLC YD +VRN+ G ++VQF Y +G +
Sbjct: 852 GGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDRSVRNSCG-EVVQFCYGADGLDPAS 910
Query: 866 GE-IGDQPVGSLSACAISEAAYSALDQP 892
E D+PV ++ A + ++P
Sbjct: 911 MEGKDDKPVDFGRVMEVTRARNTHRNEP 938
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A + + + + G ++ HL+++A+ ++ GE +G+ GLA ++
Sbjct: 1258 GIEAARTTIIREIGVTMQNHGISVDRRHLMLLADLMTFRGEVLGITRHGLARMKE----- 1312
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLS 1269
S + A F AA G D + G +++ G ++GT G FD+++ + + L+
Sbjct: 1313 SALMLASFEKTADHLFDAAYYGQTDEISGVSESIILGVPMAIGT-GFFDLVHKVDWQPLA 1371
Query: 1270 KP 1271
P
Sbjct: 1372 AP 1373
Score = 40.0 bits (92), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + RLG +C +CG K C GHFG + + H + + +L+++C C
Sbjct: 55 VLDNRLGTSQKDKKCETCG-KGLTDCVGHFGQVSLGMPVFHVGYFKAVYNILHTVCKMCA 113
Query: 104 TI 105
+
Sbjct: 114 RV 115
>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
NIH/UT8656]
Length = 1762
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 148/578 (25%), Positives = 254/578 (43%), Gaps = 69/578 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L ++
Sbjct: 345 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANG 404
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + DGD++L NR PS+H
Sbjct: 405 PTEHPGARYVIRDTG----ERIDLRHHKRASEMTLQYGWKVERHIQDGDVILFNRQPSLH 460
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL L +
Sbjct: 461 KESMMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCMVPLN 519
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + L+ Q+ + ++ P + P I
Sbjct: 520 IVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTREQVMNIMLWVPEWDGVIPQPAIIKPRP 579
Query: 541 VWSGKQLFSMLLPPDFEYT----------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
W+GKQ+ SM+LP P+ D + + G + ++ G
Sbjct: 580 RWTGKQMISMVLPRALNLERLDAKGEDPYVPANDTGLMVLEGHLMFGLFSKKFVGTSAGG 639
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI--LMDEIF 644
+ + + + + F AQ V+ WL G ++ + D + RKI ++DE
Sbjct: 640 VIHTIFNEFGHEAAMAFFNGAQHVVNYWLLHNGFSIGIGDT-VPDPETVRKIQEVVDEKK 698
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
+ E + L MN ++E + AL+QA A
Sbjct: 699 KEVEEITIRAYKEDLEPSPGMNV----------------RQTFESKVMNALNQARDQAGA 742
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
+++L N+ + M +AGSKG+ + + Q + +G Q A R P
Sbjct: 743 VTENSLKDL--------NNAITMARAGSKGSTINIAQMTAIVGQQ---AVEGKRIPFGFK 791
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 792 YRTLPHFAKDDYSAPSRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 846
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 847 YIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYGEDG 883
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 13/99 (13%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEV------------TNPRLGLPNPTNECSSCGAKDRK 67
I G+ + E E+L+V+EI + +P LG + +CS+C ++
Sbjct: 19 IQFGLFSAKETERLAVIEIEYPETMDEQRLRPREKGPNDPHLGTIDRNFKCSTC-EENMS 77
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
C GHFG IK + H F+ + K+L ++C C I+
Sbjct: 78 ECPGHFGVIKLATPVYHYGFMGKVKKILETVCLNCGKIK 116
Score = 43.5 bits (101), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ +D TR++ + GI+A L L +S G + HL I+ + ++A
Sbjct: 1336 IEGVDTTRTYTNRFTEIFEVLGIEATRAAILRELTQVLSFDGSYVNARHLGILCDVMTAR 1395
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + + G+ + S + ++ F ++AA AG +D+ +G + L G+V
Sbjct: 1396 GYVMAVTRHGI-----NKSDTGALMRCSFEQTVEILLEAAAAGELDDCRGVSENLILGQV 1450
Query: 1249 PSVGTG 1254
VGTG
Sbjct: 1451 APVGTG 1456
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 157/593 (26%), Positives = 265/593 (44%), Gaps = 92/593 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER-LSVCISF 371
I+ ++GKR D R V+T DPN+++ E+G+P +A+ + E + +N ++ L +
Sbjct: 343 IRGNLMGKRVDFSARTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDQMLELVRRG 402
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 403 NSQYPGAKYIIRDNG----ERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLH 458
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V+VLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q
Sbjct: 459 KMSMMGHRVRVLPWSTF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQ 517
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V + QM L M P + +P I K
Sbjct: 518 IITPQANKPVMGIVQDTLTAIRKMTKRDVFIEKEQMMNLLMHLPIWDGKMPTPCILK--P 575
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 576 KPMWTGKQVFSLIIPGNVNMIRTHSTHPDEEDNGPYKWISPGDTKVMVEHGELVMGILCK 635
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + +V Y Q V+ WL G ++ + D +
Sbjct: 636 KTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYL-- 693
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 694 ----EIQRAIKKAKE--DVIEVIQKAH-NMDLEPTPGNTLRQ------TFENQVNRILND 740
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ NSL AM +GSKG+ + + Q C+G Q+ P
Sbjct: 741 ARDKT--------GGSAKKSLTEYNSLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 792
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E + H++
Sbjct: 793 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGG 836
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G
Sbjct: 837 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDG 888
Score = 40.8 bits (94), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + + C +C A +
Sbjct: 16 VQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRFSRCQTC-AGNMT 74
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG I+ + H FL+ K+L +C C +
Sbjct: 75 ECCGHFGHIELAKPVFHIGFLTKAIKILRCVCFYCSKL 112
>gi|427798211|gb|JAA64557.1| Putative rna polymerase i large subunit, partial [Rhipicephalus
pulchellus]
Length = 1429
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 162/628 (25%), Positives = 264/628 (42%), Gaps = 101/628 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--SFRLLEK 376
GKR D R V++ DPN+++ E+G+P VA+ L ER+ N E + I +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPG 417
Query: 377 GELYVCRKGGLVRIRR-------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
CR G+ R R L LGD++ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFLECRGTGIKRYLRYGNREQLAQQLRLGDMVERHLKDGDVVLFNRQPSLHKLSIMAHV 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KVLP N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 478 AKVLP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALILMGTRANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ--MFCPH------RFLSPDIFKISKDSV 541
L++ QD +T +L+ + V L ++ QL M P I K +
Sbjct: 537 PLIAAIQDFITGGYLITQKDVFLDRIKACQLASCMLAGKDTNMKVELPPPAILK--PVCL 594
Query: 542 WSGKQLFSMLLPPDFEYTF-----PSKDVYISGGKLISAEGSSWLRDYE----------- 585
W+GKQ+FS+++ P Y SG ++ + +R+ E
Sbjct: 595 WTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGEEMCVNDAYVLIRNSELLSGTMDKGTM 654
Query: 586 -----GNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLY----------- 628
N+F L++ Y D+ D ++ + ++ RG ++ + D+
Sbjct: 655 GSGSKNNIFYILLRDYGDQYAADAMWRLVRLTAYYIQNRGFSIGIGDVTPGAGLIKAKQD 714
Query: 629 LASHSCSR-KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
L S +R + + ++ G +AQ CN ++ + + L +D L+ H
Sbjct: 715 LVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVCLKELSVVRDHAGKACLRELH--- 771
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
K NS L M GSKG+ + + Q C+G
Sbjct: 772 --------------------------------KTNSPLIMAVCGSKGSFINISQMIACVG 799
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q A R P+ + D + A+ + VE+SF +GL P E F H++
Sbjct: 800 QQ---AISGHRVPNGFEDRSLPHFEKHDRSPQARGF-----VEDSFYSGLTPTEFFFHTM 851
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPT 865
R+ G + RRL+ + DLC YD +VRN+ G ++VQF Y +G +
Sbjct: 852 GGREGLVDTAVKTAETGYMQRRLVKSLEDLCCHYDRSVRNSCG-EVVQFCYGADGLDPAS 910
Query: 866 GE-IGDQPVGSLSACAISEAAYSALDQP 892
E D+PV ++ A + ++P
Sbjct: 911 MEGKDDKPVDFGRVMEVTRARNTHRNEP 938
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A + + + + G ++ HL+++A+ ++ GE +G+ GLA ++
Sbjct: 1297 GIEAARTTIIREIGVTMQNHGISVDRRHLMLLADLMTFRGEVLGITRHGLARMKE----- 1351
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTLS 1269
S + A F AA G D + G +++ G ++GT G FD+++ + + L+
Sbjct: 1352 SALMLASFEKTADHLFDAAYYGQTDEISGVSESIILGVPMAIGT-GFFDLVHKVDWQPLA 1410
Query: 1270 KP 1271
P
Sbjct: 1411 AP 1412
Score = 40.0 bits (92), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + RLG +C +CG K C GHFG + + H + + +L+++C C
Sbjct: 55 VLDNRLGTSQKDKKCETCG-KGLTDCVGHFGQVSLGMPVFHVGYFKAVYNILHTVCKMCA 113
Query: 104 TI 105
+
Sbjct: 114 RV 115
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 223/903 (24%), Positives = 380/903 (42%), Gaps = 149/903 (16%)
Query: 35 VMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
VME G V + + R+G + C SCG D +C GHFG I+ + H ++S I
Sbjct: 36 VMESGVPKVGGLIDLRMGTTDRMYLCQSCGG-DNFSCPGHFGHIELTKPMFHVGYISKIK 94
Query: 93 KLLNSICPKCKTIRKERQKGAGS------SRKEQPRVCKYCV----------RNPAQWYP 136
K+L +C C I K ++GA S S + VC+ V R P
Sbjct: 95 KVLECVCFYCSKI-KIPKRGAKSTLNSVWSMSKGKAVCEGEVVGDERSGCGNRQPVVKKE 153
Query: 137 RMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSC 196
+ K ++ E++ KK+ D+ ++ FD + +P +L+
Sbjct: 154 GLTLVAFMKGEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMILTV 209
Query: 197 KQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRH 256
V V PSI E L + H++ ++ + + KK + H
Sbjct: 210 LLVPP--PSVRPSIVMEGSLRGEDDL---------THKLADIIKSNGYLKKYEQEGAPGH 258
Query: 257 LKKMVDYRGR-DIELSHLVQDCLKISKLHLDKSSR---KDSAEVRQKKNIDISNSSGLRW 312
+ + DY ++ L+ + + L KS R SA ++ K+
Sbjct: 259 IVR--DYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEG----------R 306
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI L+E+G+P +VA+ E++ S+N +RL +
Sbjct: 307 IRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEVAKIHTFPEKVTSFNIDRLEKLVRTG 366
Query: 373 LLEK-GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPH 423
E G YV R G ++ID LE G ++ R + GD+VL NR PS+H
Sbjct: 367 PNEHPGANYVLRSDG----QKIDLNFNKSDIKLEEGYVVERHMQTGDVVLFNRQPSLHKM 422
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++A +V+ +N SP++ DFDGD ++ ++PQ+ ++ EL EL + KQ+I
Sbjct: 423 SMMAHYARVMD-DKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQII 481
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM-----FCP-----------HR 527
+ QS + ++ + QD+LT L L+ ++ L FC R
Sbjct: 482 SPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFCDTPPGSTGYIGLRR 541
Query: 528 FLSPDIFKISKDS-------VWSGKQLFSMLLPPDFEYT-FPS----------------- 562
DI K+ K +W+GKQ+ S +L P+ YT F S
Sbjct: 542 TKDYDIMKVLKRPAIAKPMRLWTGKQILSFVL-PNMNYTGFSSEHNDEDSENINDTKVII 600
Query: 563 KDVYISGGKL-ISAEGSSWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLS-VRG 619
+D YI G + A G++ +G L + + K F Q ++ +++ +
Sbjct: 601 QDGYIHSGVIDKKAAGAT-----QGGLVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHT 655
Query: 620 MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRS 679
++ + D + + +++E +R+A++ + ++ ++ N L S
Sbjct: 656 FSIGIGDTIADAKTVK---MVEE---AIRKAKEEVSV--IIENARQNRLERLPGMTMKES 707
Query: 680 LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKL 739
+ HL+ R+ +S S A + S +N++ M AGSKG+ + +
Sbjct: 708 FE-SHLNLVLNRARDVSGTS--------------AQRSLSGNNNMKTMVLAGSKGSFINI 752
Query: 740 VQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
Q + C+G Q+ R P S D T ++ + VENS+LTGL+P
Sbjct: 753 SQVTACVGQQNVEGK---RIPFGFSHRTLPHFVKDDYTGRSRGF-----VENSYLTGLDP 804
Query: 800 LECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E F H++ R+ G + RRL+ + D D +VR+ G + Q Y
Sbjct: 805 EEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNG-LVYQVKYG 863
Query: 858 IEG 860
+G
Sbjct: 864 EDG 866
>gi|315230006|ref|YP_004070442.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
gi|315183034|gb|ADT83219.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
Length = 906
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 164/601 (27%), Positives = 276/601 (45%), Gaps = 102/601 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DP + + E+G+P +A L + E++ +N E+L + EK
Sbjct: 321 GKRVNFSARTVISPDPMLSINEVGVPLAIAMELTVPEKVTDFNIEKLRKMV-LNGPEKYP 379
Query: 377 GELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G YV G RIR +++ L++G + R L DGDIVL NR PS+H S++A
Sbjct: 380 GANYVIDPQGR-RIRLMESNRETIAEMLDIGWTVERHLMDGDIVLFNRQPSLHRMSIMAH 438
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G
Sbjct: 439 RVRVMPYKTF-RLNLAVCPPYNADFDGDEMNLHVPQTEEAQAEARILMEVQNHIISPRYG 497
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK-DSV------ 541
++ QD ++ +LL + + +++Q+ MF DI K+ + D V
Sbjct: 498 GPIIGGIQDHISGGYLLTREGAYFTRSEVEQMLMFA-----GVDIDKLPEPDKVEDGIEY 552
Query: 542 WSGKQLFSMLLPPDF-----------------------EYTFPSKD----------VYIS 568
WSGK +FS+LLP D E P + VYI
Sbjct: 553 WSGKTIFSLLLPDDLTIWYRNKLCDDPSKCEPLEKLIEEKLLPDPEEVRKLAYDGFVYIQ 612
Query: 569 GGKLISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLS 625
GKL+S + ++ R+ +G + +++ Y ++ FL ++ ++ +G T ++
Sbjct: 613 NGKLLSGAIDKKAYGRE-DGKILDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAID 671
Query: 626 DLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
D L + MD I +REA++ + L+ A + L G+ L
Sbjct: 672 DEDLPEEA------MDRIKEIIREAEE-----------RVKRLIEAYKAGELEPLPGKTL 714
Query: 686 --SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHS 743
+ E + A L++A +A K +A +Y +N + M K G++G +L + Q +
Sbjct: 715 EETLESKIMAVLAEARDNAGK--------VAEQYLGMNNFAVIMAKTGARGKILNITQMA 766
Query: 744 LCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECF 803
LG Q +R + + GD A+ + V NS+ +GL P E F
Sbjct: 767 ALLGQQSIRGKRLYR---GYRGRVLSHFKPGDLGARARGF-----VINSYKSGLTPQEYF 818
Query: 804 IHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
H++ R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 819 FHAMGGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFRYGEDG 876
Query: 861 T 861
Sbjct: 877 V 877
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 -YGDCPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIK 107
>gi|222639938|gb|EEE68070.1| hypothetical protein OsJ_26086 [Oryza sativa Japonica Group]
Length = 804
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 153/562 (27%), Positives = 261/562 (46%), Gaps = 66/562 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI + E+G+P +A L E + +N ERL + +
Sbjct: 277 IRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYG 336
Query: 373 LL----EKGELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G V+ LELG + R L DGD VL NR PS+H
Sbjct: 337 PHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHK 396
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ + K +
Sbjct: 397 MSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 455
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ QS R ++ + QD+L + + L+ + M+ + +P I K
Sbjct: 456 VSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILK--PR 513
Query: 540 SVWSGKQLFSMLLP------------PDFEYTFPSKD---VYISGGKLISAE-GSSWLRD 583
+W+GKQ+F++++P + E F + V I G+L+S L
Sbjct: 514 PIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGT 573
Query: 584 YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + D FL Q ++ WL G ++ + D + + M +
Sbjct: 574 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGD------TIADAATMVK 627
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +A+D + ++L++ +H L ++E R++ S+E + + L++A DA
Sbjct: 628 INETISKAKD--DVKELIMQAHDKQL----EAEPGRTMME---SFENRVNQVLNKARDDA 678
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ A K S+ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 679 --------GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIPFG 727
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 728 FIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 782
Query: 821 PGTLTRRLMFFMRDLCTAYDGT 842
G + RRL+ M D+ YDGT
Sbjct: 783 TGYIQRRLVKAMEDIIVKYDGT 804
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 152/578 (26%), Positives = 263/578 (45%), Gaps = 65/578 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L +E + +N +L ++
Sbjct: 330 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVQMVNNG 389
Query: 373 L-LEKGELYVCRKGG----LVRIRRIDA---LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
+ G Y+ R G LV + + L+ G + R + DGD++L NR PS+H S
Sbjct: 390 PNIHPGAKYIIRPTGEKLNLVGNKTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKES 449
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL EL + +++
Sbjct: 450 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKELALVPLNIVS 508
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWS 543
Q L+ + QD+L + + L+ + + M+ P + P I W+
Sbjct: 509 PQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPRPRWT 568
Query: 544 GKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWLRDYEGN 587
GKQ+ SM+LP P E P D +I GG+L+ + S + G
Sbjct: 569 GKQIISMVLPSGLNLLRLDKDGAPLAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGG 628
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + Y D + F Q V+ WL G ++ + D + + ++ I
Sbjct: 629 VIHTIFNEYGPDVCMSFFNGTQRVVNYWLLHNGFSIGIGDTIPDAKTVAK------IEEA 682
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFK 704
+RE +D + + D+ + L L G ++ ++E + S AL+ A DA
Sbjct: 683 VRERKD--EVEDITDDATRDAL---------DPLPGMNIRETFESKVSRALNNARDDA-- 729
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
N+ K N + M ++GSKG+ + + Q +G Q R P
Sbjct: 730 ------GNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEGK---RIPFGFK 780
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 781 YRTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 835
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 836 YIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFIYGEDG 872
Score = 46.6 bits (109), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 20 ISLGISTDTEKEKLSVMEI------------GAVSEVTNPRLGLPNPTNECSSC--GAKD 65
I G+ + E +K+SV++I + +P+LG + +C++C G D
Sbjct: 1 IQFGLLSPDEIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGIMD 60
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKE 108
C GHFG I+ + H FL+ I KLL ++C C I+ +
Sbjct: 61 ---CPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKAD 100
>gi|110669618|gb|ABG81904.1| RNA polymerase II largest subunit [Simonyella variegata]
Length = 1013
Score = 180 bits (457), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 200/854 (23%), Positives = 357/854 (41%), Gaps = 111/854 (12%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI--RKERQKGAGSSRKEQPR---- 122
C GHFG I+ + H F++ KLL ++C C + + Q A + R P+
Sbjct: 2 CPGHFGHIELAAPVFHIGFINKTKKLLETVCHNCSKVLLDESNQAFAAALRIRDPKRRFD 61
Query: 123 ----VCK---YCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGF 175
+CK CV +P+ K + K G ++ K+ K+ W
Sbjct: 62 TVHKLCKSRPICVPDPSPEEKEADPKEAMKPTHGGCG---NRHPQIRKEGLKI-QGTWK- 116
Query: 176 IPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP-----FLKCFPVTP 230
+P +EE +++++ + + +++ + LS D + PV P
Sbjct: 117 VPKGEDEEERGATEEKRMITPQMALDIFRNISQEDIRKLGLSNDYARPEWMIITVLPVPP 176
Query: 231 NNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV----DYRGRDIELS--HLVQDCLKISKLH 284
R + V + S D+ T L +V + R + E S H+ + + + H
Sbjct: 177 PQVRPSVV-VSNSGAGPRGEDDLTYKLGDIVRANMNVRRCESEGSPQHVKTEFESLLQFH 235
Query: 285 LDKSSRKDSA--------EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNI 336
+ + A R K+I ++ ++GKR D R V+TGDPN+
Sbjct: 236 VATYMDNNIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 295
Query: 337 KLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKGELYV-----CRKGGLVRI 390
L E+G+P + + L E +N N LS + + L G YV + L R+
Sbjct: 296 SLDEVGVPVTICKTLTYVETVNPRNIAYLSRLVETGPNLHPGANYVINMDRTKTWDLRRV 355
Query: 391 RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
+ LE G + R + DGD ++ NR PS+H S++ VKV+P S+ +N P++
Sbjct: 356 KNPPRLEYGWQVERHIDDGDYIIFNRQPSLHKESMMGHRVKVMPWSTF-RLNLSVTGPYN 414
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
DFDGD ++ ++PQ R E+ EL + +++ Q L+ + QD+L + + V
Sbjct: 415 ADFDGDEMNLHVPQTEATRAEVKELCMVPHNIVSPQRNGPLMGIVQDTLCGIYKICRRDV 474
Query: 511 LLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFSMLLPPDF-------EYTFPS 562
L+ Q + M+ P + P + +W+GKQ+ S+ LP E P
Sbjct: 475 FLTQEQAMNVLMWVPEWDGIMPQPALLKPKPMWTGKQIISLALPAGLNLLRGSEEGMSPV 534
Query: 563 KD--VYISGGKLISAEGSSWLRDYEGNLFQYLI--KRYRDKVLDFLYAAQEVLCEWLSVR 618
D ++++ G+L+ S G ++I ++ D + F AQ+++ WL
Sbjct: 535 NDDGLFVNNGELMFGLFSKKSVGASGGGIIHVIFNEKGPDAAVRFFNGAQQIVNYWLLQN 594
Query: 619 GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
G ++ + D + +++ Q + Q+ V++ + + +
Sbjct: 595 GFSIGIGDTTPDPTT-------------VQQIQGAIDEQKAEVEA----ITTEATNNELE 637
Query: 679 SLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNL 736
L G ++ ++E + S AL+ A +A ++++ N+ + M +AGSKG+
Sbjct: 638 PLPGMNIRETFESKVSKALNSARDNAGSKTEKSLKDI--------NNAVQMARAGSKGST 689
Query: 737 LKLVQHSLCLGLQH---SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAV-V 789
+ + Q + +G Q P F++ PH Y P A +
Sbjct: 690 INISQMTAVVGQQSVEGKRIPFGFKYRTLPH----------------FTKDDYSPEAPWL 733
Query: 790 ENSFLT-GLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNA 846
FL+ GL P E F H++ R+ G + RRL+ + D+ YD TVRN+
Sbjct: 734 CGKFLSXGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDTTVRNS 793
Query: 847 YGNQIVQFSYNIEG 860
G+ IVQF Y +G
Sbjct: 794 LGD-IVQFVYGEDG 806
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 157/586 (26%), Positives = 262/586 (44%), Gaps = 95/586 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N RL + E
Sbjct: 353 LMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGRLHELVQNGPNEH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L GD ++ NR PS+H S+
Sbjct: 413 PGAKYVIRTDGT----RIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 469 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPINIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L A+ L V LS Q+ + ++ P+ + P + W+G
Sbjct: 528 QRNGPLMGIVQDTLAGAYKLCRRDVFLSKEQVMNIMLWVPNWDGIIPPPAIVRPRPRWTG 587
Query: 545 KQLFSMLLP--------PDFEYTFPSKD--VYISGGKLISAEGSSW-LRDYEGNLFQYLI 593
KQ+ S+ +P PD + P KD + I G+++ S + G + +
Sbjct: 588 KQIMSLAVPNIVSLHSAPDSKEDNPLKDEGLLIQSGQIMYGLLSKKNIGAASGGIVHIVY 647
Query: 594 KRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ + + FL Q+V+ WL G ++ + D + K+ ++++
Sbjct: 648 NEHGPEAAMKFLNGVQQVVNYWLLHNGFSIGIGD------TIPDKVTIEKV--------- 692
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL----------SYEKQRSAALSQASVDA 702
Q+ +D H A+ E TR L ++E + S AL+ A A
Sbjct: 693 -----QVHIDEH-----KAEVEEYTRQATANELEPLPGMNIRETFESKVSKALNTARDKA 742
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF 759
+++L N+ + M +GSKG+ + + Q + +G Q P F++
Sbjct: 743 GTTTQKSLKDL--------NNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKY 794
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 795 RTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDT 840
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 841 AVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGD-ILQFLYGEDG 885
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C ++ C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRQFKCKTC-SQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCS 113
Query: 104 TIRKER 109
+ +R
Sbjct: 114 KVLADR 119
Score = 40.0 bits (92), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D R++ +++ +GI+A + L ++ G + HL ++ + ++
Sbjct: 1343 VDGVDSNRTYTNHLWQVVEVFGIEAARAALVRELTQVLAFDGSYVNHRHLALLCDVMTYR 1402
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + G+ + + + ++ F ++AA G +D+ +G + + G++
Sbjct: 1403 GTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQM 1457
Query: 1249 PSVGTGGHFDII 1260
+GT GHFD++
Sbjct: 1458 APMGT-GHFDVL 1468
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 224/894 (25%), Positives = 381/894 (42%), Gaps = 131/894 (14%)
Query: 35 VMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
VME G + + R+G + C SCG D +C GHFG I+ + H ++S I
Sbjct: 36 VMEGGVPKTGGLIDLRMGTTDRMYLCQSCGG-DNFSCPGHFGHIELTKPMFHVGYISKIK 94
Query: 93 KLLNSICPKCKTIRKERQKGAGS------SRKEQPRVCKYCV----------RNPAQWYP 136
K+L +C C I K ++G S S + VC+ + R P
Sbjct: 95 KVLECVCFYCSKI-KVSKRGVRSTLNNVWSMSKSKLVCEGEILDNGKSGCGNRQPVIKKE 153
Query: 137 RMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSC 196
+ K ++ E++ KK+ D+ ++ FD + +P +L+
Sbjct: 154 GLTLVAFMKGEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMILTV 209
Query: 197 KQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRH 256
V V PSI E L + H++ ++ + + KK + H
Sbjct: 210 LLVPP--PAVRPSIVMEGSLRGEDDL---------THKLADIIKSNGYLKKYEQEGAPGH 258
Query: 257 LKKMVDYRGR-DIELSHLVQDCLKISKLHLDKSSR---KDSAEVRQKKNIDISNSSGLRW 312
+ + DY ++ L+ + L L KS R SA ++ K+
Sbjct: 259 IVR--DYEQLLQFHVATLIDNELGGQPQALQKSGRPLKSLSARLKGKEG----------R 306
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI L+E+G+P +VA+ ER+ S+N ++L +
Sbjct: 307 IRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEVAKIHTFPERVTSFNIDKLEKLVRAG 366
Query: 373 LLEK-GELYVCRKGGL---VRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
E G YV R G + R D LE G I+ R + GD+VL NR PS+H S++A
Sbjct: 367 PNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYIVERHMQSGDVVLFNRQPSLHKMSMMA 426
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
+V+ +N SP++ DFDGD ++ ++PQ+ ++ EL EL + KQ+I+ QS
Sbjct: 427 HYARVMG-DKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQS 485
Query: 488 GRNLLSLGQDSLTAAHL-------LMEDSVLL---------SHLQMQQLQMFCPHRFLSP 531
+ ++ + QD+LT L L E V+L S + +R
Sbjct: 486 NKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFSDTAPGETTYMGVNRTKDY 545
Query: 532 DIFKISKD-------SVWSGKQLFSMLLPPDFEYT-FPSK-----DVYISGGKLISAEG- 577
DI K+ K+ +W+GKQ+ S +L P+ YT F S+ + I+ K+I G
Sbjct: 546 DIMKVLKNPAIAKPMKLWTGKQILSFVL-PNLNYTGFSSEHNEDDNENINDTKVIIQNGY 604
Query: 578 -SSWLRD------YEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLS-VRGMTVSLSDLY 628
S + D +G L + + K F Q+++ +++ + ++ + D
Sbjct: 605 IHSGVIDKKAAGATQGGLIHIIFNDFGPKRAAQFFNGVQKMINIFMTGIHTFSIGIGDTI 664
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYE 688
+ + ++DE +R+A++ + ++ ++ N L S + HL+
Sbjct: 665 ADAKTVK---MVDE---AIRKAKEEVSI--IIENARQNRLERLPGMTMKESFE-SHLNLV 715
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
R+ +S S A + S +N++ M AGSKG+ + + Q + C+G
Sbjct: 716 LNRARDVSGTS--------------AQRSLSGNNNMKTMVLAGSKGSFINISQVTACVGQ 761
Query: 749 QHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
Q+ R P S D T ++ + VENS+LTGL+P E F H++
Sbjct: 762 QNVEGK---RIPFGFSQRTLPHFVKDDYTGKSRGF-----VENSYLTGLDPEEFFFHAMG 813
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + D D +VR+ G + Q Y +G
Sbjct: 814 GREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNG-LVYQVKYGEDG 866
>gi|397135866|gb|AFO11428.1| RNA polymerase I, partial [Aciculoconidium aculeatum]
Length = 872
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 153/570 (26%), Positives = 265/570 (46%), Gaps = 63/570 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEFVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P+ + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDIYIEYDQVMNICYWIPNWDGVIPPPAIVKPKPLWTG 387
Query: 545 KQLFSMLLP-----------PDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D + + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHLQRFDGGKDMLSPNDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L+++ Q+V+ WL G ++ + D +A + I ++EA++
Sbjct: 448 REKGPQVCAKLFSSIQKVVNYWLLHNGFSIGIGDT-IADAGTXKTITST-----IQEAKE 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
++++D+ N + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--XEIILDAQQN----RXEPEPGMTLRE---SFEHNVSRILNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S +G Q R P S
Sbjct: 553 L--------NNVKQMVTSGSKGSFINISQMSAXVGQQIVEGK---RIPFGFSDRTLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ D+ YDGT RN+ G+ IVQF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IVQFVYGEDG 685
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 159/612 (25%), Positives = 264/612 (43%), Gaps = 79/612 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPN+ + ++G+P +A L E + +N E LS + + +
Sbjct: 260 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNLEMLSQMVRNGPNVH 319
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G +V R G RID L+ G + R L D D ++ NR PS+H S+
Sbjct: 320 PGAKHVIRDTG----ERIDLRYSKRGGDIHLQYGYKVERHLLDDDYIIFNRQPSLHKMSM 375
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VK++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + KQ+++
Sbjct: 376 MGHRVKIMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSHETRAEIQQLCMVPKQIVSP 434
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR---FLSPDIFKISKDSVW 542
Q ++ + QD+L + L + L M+ P+ P I K +W
Sbjct: 435 QKNAPVMGIVQDTLCGIRKFTKRDTFLHRDLLMNLLMWVPNWDGIIPMPAILK--PIPLW 492
Query: 543 SGKQLFSMLLP-----------PDFEYTFPS---KDVYISGGKLISA------EGSSWLR 582
+ KQ+ S+++P PD E T S V I G+L++ GSS
Sbjct: 493 TAKQVMSIIIPQINMIGFHSTHPDDENTDISPGDTKVIIENGELLAGILCKKTVGSS--- 549
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G + + + + DF Q V+ WL G ++ + D ++ K + D
Sbjct: 550 -ASGVIHTSMNEHGPEITKDFFNGTQAVVNYWLLQNGFSIGIGDTIADKNTM--KAINDT 606
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + +E Q ++ + L S SL L+ + + +Q S+
Sbjct: 607 IAHAKKEVNKIILKAQ---NNELECLPGMTIRGSFESLVNMELNRARDNAGKSAQKSLKE 663
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
F N++ M AGSKG+ L + Q + C+G Q+ R P
Sbjct: 664 F------------------NNVKQMVVAGSKGSFLNISQMTACVGQQNVEGK---RIPFG 702
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D++ ++ + VENS+L GL P E F H++ R+
Sbjct: 703 FKDRTLPHFTKDDHSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 757
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D YDGTVRN+ G+ I+QFSY +G E P ++S A
Sbjct: 758 TGYIQRRLVKALEDATVKYDGTVRNSLGD-IIQFSYGEDGMDGARLEKQKLPSMTMSDAA 816
Query: 881 ISEAAYSALDQP 892
+ + +P
Sbjct: 817 FKKKYRIDISEP 828
>gi|31127042|gb|AAF26663.2|AF139013_1 RNA polymerase II largest subunit [Tanystylum orbiculare]
Length = 624
Score = 180 bits (456), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 150/585 (25%), Positives = 264/585 (45%), Gaps = 104/585 (17%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R
Sbjct: 3 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMHELVHRGNSQYPGAKYIIRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G R+D L+ G + R + DGD+V+ NR P++H S++ V+VLP
Sbjct: 63 G----ERVDLRFHPKPSDVHLQYGYRVERHVRDGDVVIFNRQPTLHKMSMMGHRVRVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N +P++ DFDGD ++ ++PQ++ R E+ +L + + +I Q+ + ++ +
Sbjct: 119 STF-RMNLSVTTPYNADFDGDEMNLHVPQSLETRAEIEKLAMVPRNIITPQANKPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+L A + + V L QM L MF P R + P I K +W+GKQLFS+++
Sbjct: 178 QDTLMAVRKMTKRDVFLERDQMMTLLMFLPTWDGRMMQPAILK--PKPLWTGKQLFSLII 235
Query: 553 P------------PDFEYTFPSK-------DVYISGGKLISA------EGSSWLRDYEGN 587
P PD E P K V I G L+S G S G+
Sbjct: 236 PGTVNCIRTHSTHPDDEDDGPYKWISPGDTKVLIEHGHLLSGIICKRTVGPSG-----GS 290
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ +V Y Q V+ WL + G ++ + D +A H + +I
Sbjct: 291 LMHIVMLELGHEVAGLFYGHIQTVVNNWLLLEGHSIGIGDT-IADHQTYQ-----DIRNT 344
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAF 703
+R+A++ + +++ +H + L + ++ + + L+ + ++ + +Q S+ F
Sbjct: 345 IRKAKN--DVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEF 402
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR-- 758
N+ AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 403 ------------------NNFKAMVVSGSKGSKINISQVIACVGQQNVEGKRIPFVFRKR 444
Query: 759 -FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH + R VENS+L+GL P E F H++ R+
Sbjct: 445 TLPHFIKXXXXPXSR--------------GFVENSYLSGLTPAEFFFHAMGGREGLIDTA 490
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGT+RN+ Q++Q Y +G
Sbjct: 491 VKTAETGYIQRRLIKAMESVMVTYDGTIRNSV-QQLIQLRYGEDG 534
>gi|223478217|ref|YP_002582841.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
gi|214033443|gb|EEB74270.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
Length = 905
Score = 180 bits (456), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 160/599 (26%), Positives = 273/599 (45%), Gaps = 98/599 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR + R V++ DP I + E+G+P +A L + E++ +N+E+L R+L E
Sbjct: 321 GKRVNFSARTVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLRQ----RVLNGPE 376
Query: 379 LY------VCRKGGLVRIRR------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
Y + +G +R+ + L++G + R L DGDIVL NR PS+H S++
Sbjct: 377 KYPGANYVIDPEGRRIRLMENNLEIIAERLDIGWTVERHLEDGDIVLFNRQPSLHRMSIM 436
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
A V+V+P + +N C P++ DFDGD ++ ++PQ A+ E L+ + +I+ +
Sbjct: 437 AHRVRVMPYKTF-RLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPR 495
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWS 543
G L++ QD ++ +LL + + +++Q+ F PD + + +WS
Sbjct: 496 YGGPLIAGIQDHISGGYLLTREGAYFTRSEVEQMLTFAGVDVDELPEPDKVE-NGVELWS 554
Query: 544 GKQLFSMLLPPDF-----------------------EYTFPSKD----------VYISGG 570
GK +FS+LLP D E P + VYI G
Sbjct: 555 GKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLVPDPEEVRKLAYDGFVYIQNG 614
Query: 571 KLISA--EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDL 627
KL+S + ++ R+ +G L +++ Y ++ FL ++ ++ +G T ++ D
Sbjct: 615 KLLSGAIDKKAYGRE-DGKLLDLIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDE 673
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL-- 685
L + R + EI +REA++ + L+ A L G+ L
Sbjct: 674 DLPQEALDR---IKEI---IREAEE-----------RVQRLIEAYKRGELEPLPGKTLEE 716
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ E + A L++A +A K +A +Y +N + M K G++G +L + Q +
Sbjct: 717 TLESKIMAVLAEARDNAGK--------VAERYLGMNNHAVIMAKTGARGKILNITQMAAM 768
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
LG Q +R + GD A+ + V NS+ +GL P E F H
Sbjct: 769 LGQQSIRGKRLYRG---YRGRVLTHFKPGDLGARARGF-----VVNSYKSGLTPQEYFFH 820
Query: 806 SVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
++ R+ D A G + RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 821 AMGGRE-GLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTG-IIVQFRYGEDGV 877
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
+ C GHFG I+ ++H F I ++L S C +C I+
Sbjct: 67 AGE-CPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIK 107
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 229/936 (24%), Positives = 376/936 (40%), Gaps = 152/936 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEIG----------AVSEVTNPRLGLPNPTNECSSCGAKDR 66
+ + G+ + E ++SV EI + +PRLG C +C D
Sbjct: 17 VKAVQFGVLSPDEIRRMSVCEIKFETAFEMGKPKTEGLMDPRLGAIGRDLPCKTCHC-DE 75
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC-KTIRKERQKGAGSSRKE------ 119
K C GHFG I+ + + F ++L +C C K + R A K+
Sbjct: 76 KNCPGHFGHIELVKPMFNIGFFGMTLRVLRCVCFFCSKLLIDPRDPKADFEVKKVLRIKN 135
Query: 120 -------------QPRVCKYCVRNPAQWYP-----RMRFKLSSKDLSGKTAIIVEIDEKL 161
+ ++CK+C ++ R FK S+ D K I+ EK+
Sbjct: 136 RINRLKKVQNLCSKVKICKHCSNEQPKFAKEGLQFRAEFKGSADDTMEKKQIVSA--EKV 193
Query: 162 SKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP 221
K + DD + Q S E FIL+
Sbjct: 194 LSIFKHISDDDIEIMGLSPQH--------------------------SRPEWFILT---- 223
Query: 222 FLKCFPVTPNNHRVTEVPHA-FSHEKKLFF--------DNWTRHLKKMVDYRGRDIELSH 272
FPV P + R + + A E L + +N R +++ R E H
Sbjct: 224 ---LFPVPPPHIRPSVMMDASMRGEDDLTYKLGDIVRNNNALREMERTGAPAHRLNEQIH 280
Query: 273 LVQ-DCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
++Q + I L R R K+I ++ ++GKR D R V++
Sbjct: 281 VLQAHIITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGKRVDFSGRTVIS 340
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG---- 386
DPN++L ++G+P +A L E + +N E++ + E G Y+ R G
Sbjct: 341 PDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPGAKYIERLDGSKVN 400
Query: 387 --LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPL 444
V+ R L G+ + R L DGD V+ NR PS+H S++ VKV+ SS +N
Sbjct: 401 LAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRYSSF-RLNLS 459
Query: 445 CCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHL 504
C SP++ DFDGD ++ ++PQ+ AR E+ +L+ + + +++ Q + ++ + QD+L L
Sbjct: 460 CTSPYNADFDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGIVQDTLVGTML 519
Query: 505 LME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLP---------- 553
+ D+ + L M L F + P + +W+GKQLFSM+LP
Sbjct: 520 FTQRDTFMEKDLVMNLLLHFRGWDGVIPPPAILKPRQLWTGKQLFSMILPDVNLVRFSNT 579
Query: 554 ---PDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR--DKVLDFLYAAQ 608
D E +K V IS G+L+S N ++ + + D + Q
Sbjct: 580 HDDDDIENAGDTK-VLISRGELLSGTVDKRTVGSAANSLVHVTWKEHGPEGACDLISNIQ 638
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILM-----DEIFYGLREAQDTCNFQQLMVDS 663
++ WL RG ++ + D + I + +E+ +R+AQ+ QL+
Sbjct: 639 TLVNHWLLQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRLVRKAQE--GELQLLPGK 696
Query: 664 HMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNS 723
M M + ++ + L G A ++ DA K + K N+
Sbjct: 697 TM---MESFETGVNKVLNG-----------ARDKSGSDAQKSLL------------KTNN 730
Query: 724 LLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY 783
+ M AGSKG+ + + Q C+G Q+ R + D ++ +
Sbjct: 731 IKRMVNAGSKGSFINISQICACVGQQNVEGK---RISYGFRRRTLPHFVLDDLGPESRGF 787
Query: 784 IPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDG 841
VENS+L GL E F H++ R+ G + RRL+ + D+ YDG
Sbjct: 788 -----VENSYLRGLTATEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKALEDVMVKYDG 842
Query: 842 TVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
TVRN+ G IVQF Y +G E DQ + +LS
Sbjct: 843 TVRNSTG-LIVQFLYGEDGMDGAMVE--DQNLRTLS 875
Score = 45.8 bits (107), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D+TR+ +++ + GI+ L + IS G + HL I+A+ ++ G
Sbjct: 1348 VDYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHLAILADIMTCRGHI 1407
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + ++ F ++AA G VD+++G + + G++ V
Sbjct: 1408 MSITRHGI-----NRVETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPV 1462
Query: 1252 GTG 1254
GTG
Sbjct: 1463 GTG 1465
>gi|330791878|ref|XP_003284018.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
gi|325086064|gb|EGC39460.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
Length = 1396
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 167/600 (27%), Positives = 261/600 (43%), Gaps = 78/600 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ + E+ +P +A + ER++ +N ERL I+ G
Sbjct: 347 GKRVDFSGRTVISPDPNLNIDEVAVPQLIALTMTYPERVSDYNIERLQKYVINGPDRHPG 406
Query: 378 ELYVCRKGGLV-------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ + G+ R + L++GDI+ R + DGDI+L NR PS+H S+++
Sbjct: 407 ANYIIYQDGVKKWLKFGNREKFAAELKVGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKA 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+V+P ++ N C+P++ DFDGD ++ ++PQ AR E T L+ + LI ++G
Sbjct: 467 RVMPWRTL-RFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH--------RFLSPDIFKISKDSVW 542
L++ QD LTA++L+ + + C H P I K +W
Sbjct: 526 LVAATQDFLTASYLISRRDAFYDRY---RFTLMCTHFADANEHIDLPPPAILK--PIELW 580
Query: 543 SGKQLFSMLLPPDFEY----TFPSKD-VYISGGKLISAEGSSWLRDYE------------ 585
+GKQ+F +LL P + TF +K Y + +G + R+ E
Sbjct: 581 TGKQIFEVLLRPSVKSHVLCTFETKSRTYSKNLYMCPKDGYVYFRNSELMCGSIDKSIIG 640
Query: 586 -GN---LFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKILM 640
GN LF L++ + + LC +L +G ++ + D+ A RK +
Sbjct: 641 GGNKNSLFHILMRDFSPSIAANSMTRLAKLCARFLGDQGFSIGIPDVQPAPDLDQRKRDI 700
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
E Y C+ Q + D L A + ++E + + LSQ
Sbjct: 701 IETAYS------KCD--QFLKDFENGNLPVASGCSMEQ-------TFEAKMNQTLSQIRD 745
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
D K D+ N NS L M GSKG+ + + Q C+G Q R P
Sbjct: 746 DCGKLCVNDLPNY--------NSPLIMGLCGSKGSNINIAQMICCVGQQIVNGT---RIP 794
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ + AK + V NSF TG+ P E F H++ R+
Sbjct: 795 NGFTNRTTPHFLHFQKNAKAKGF-----VSNSFYTGMIPTEFFFHTMGGREGLVDTAVKT 849
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRLM + DL T YD TVR+++G IVQF Y +G E D+PV L A
Sbjct: 850 AETGYMQRRLMKALEDLSTHYDYTVRDSFGG-IVQFCYGDDGLDPAGMEAKDRPVDFLRA 908
Score = 49.3 bits (116), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + +LG + C++CG C GHFG+IK + H +L +I +L IC C
Sbjct: 49 VLDNKLGTSDKQQNCTTCGLSIVD-CVGHFGYIKLQLPVFHIGYLKNIMNILQMICKNCS 107
Query: 104 TIRKERQKGAGSSRK 118
+I + +K + RK
Sbjct: 108 SILLDEEKKSTYLRK 122
>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
kw1407]
Length = 1745
Score = 179 bits (455), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 152/575 (26%), Positives = 258/575 (44%), Gaps = 76/575 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N RL + E
Sbjct: 354 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGRLHQLVQNGPNEH 413
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 414 PGAKYVIRSDGT----RIDLRHHRRAGQISLEYGWKVERHLIDGDFIIFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L A+ L V LS Q+ + ++ P + P + W+G
Sbjct: 529 QRNGPLMGIVQDTLAGAYKLCRRDVFLSKEQVMNIMLWVPEWNGVIPRPAILKPRPRWTG 588
Query: 545 KQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIKRY 596
KQ+ S+++P + D + L+ G + G +
Sbjct: 589 KQIMSLVIPKTINLRMGNDDTALKDDGLLIQTGELMYGLPTKKSVGASGGGIIHICFNEL 648
Query: 597 -RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN 655
D + FL Q V+ WL G ++ + D + K ++++ Q+ +
Sbjct: 649 GSDGAMAFLNGCQRVVNYWLLHNGHSIGIGD------TIPDKATIEKV-------QEQID 695
Query: 656 FQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNL 713
Q+ V + + +A + E +L G ++ ++E + S AL+ A A ++++
Sbjct: 696 TQKEEV-RRLTAMATANELE---ALPGMNIRETFENKVSKALNTARDKAGTTTQESLKDI 751
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSCAA 767
N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 752 --------NNAVTMARSGSKGSSINISQMTALVGQQIVEGRRIPFGFKYRTLPH------ 797
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + A+ + VENS+L GL P E F H++ R+ G +
Sbjct: 798 ---FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 849
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 850 RRLVKALEDVSAKYDGTVRNSLGD-VIQFVYGEDG 883
Score = 44.3 bits (103), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V +P LG + +C +C ++ C GHFG I+ + HP F+ K+L +C C
Sbjct: 55 VNDPLLGSVDRQFKCKTC-TENMSECPGHFGHIELAKPVYHPGFIKKTKKVLEIVCHNCS 113
Query: 104 TIRKER 109
+ +R
Sbjct: 114 MVLADR 119
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D R++ +++ +GI+A L L + +S G + HL ++ + ++
Sbjct: 1347 VDGVDPKRTYTNDLHQVVDVFGIEAARSTLLRELTAVLSFDGSYVNHRHLALLVDVMTYR 1406
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + G+ + + + ++ F ++AA G +D+ +G + + G++
Sbjct: 1407 GSIAAVTRHGI-----NRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQL 1461
Query: 1249 PSVGTGGHFDII 1260
+GT GHF+++
Sbjct: 1462 APMGT-GHFEVL 1472
>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
Length = 847
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 154/583 (26%), Positives = 269/583 (46%), Gaps = 81/583 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P +A L E + N + L + E
Sbjct: 105 LMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTYPELVTRLNIDHLQELVRNGPSEH 164
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L++G + R + DGDIV+ NR PS+H S+
Sbjct: 165 PGAKYVIRDTG----ERIDLKHYKRAGEVRLQIGWKVERHIDDGDIVIFNRQPSLHKMSM 220
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ +IPQ++ + E+ E+ + KQ+++
Sbjct: 221 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHIPQSVETKAEIMEICMVPKQIVSP 279
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L A + L+ + + M+ P P I K +W
Sbjct: 280 QSNKPVMGIVQDTLCAIRKFTKRDCFLTRDLVMNILMWVPDWDGHIPIPCILKPV--PMW 337
Query: 543 SGKQLFSMLLP-------------PDFEYTFPS---KDVYISGGKLISA------EGSSW 580
+GKQ+ S+++P PD E + S V I G+L+S G+S
Sbjct: 338 TGKQILSIIIPKGVNSDNLRHSTHPDNETSDISPGDTKVLIEDGELLSGIVCKKTVGTS- 396
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+G + + + + +FL Q V+ WL G ++ + D + + K +
Sbjct: 397 ---QQGLIHVIMQELGPEAAKNFLNGCQGVVNYWLLQNGFSIGIGD------TIADKDTI 447
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+ I + A+ Q++++ + + L + + R ++E + + L+ A
Sbjct: 448 ESIAQTISNAK--SRVQEIIIQAQQDKL-EPQPGMTIRK------TFENKVNKELNTARD 498
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
A + A K + N++ M +GSKG+ + + Q S C+G Q+ R P
Sbjct: 499 AAGRS--------AEKSLGEYNNVKQMVISGSKGSFINISQMSACVGQQNVEGK---RIP 547
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D++ ++ + VENS+L GL P E F H++ R+
Sbjct: 548 FGFKYRTLPHFTKDDHSPESRGF-----VENSYLRGLTPTEFFFHAMGGREGLIDTAVKT 602
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G + RRL+ + D+ YDGTVRN+ G+ +++F Y +GT
Sbjct: 603 AETGYIQRRLVKALEDVMVKYDGTVRNSLGD-VIRFCYGEDGT 644
>gi|397135800|gb|AFO11395.1| RNA polymerase I, partial [Barnettozyma populi]
Length = 871
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 161/585 (27%), Positives = 264/585 (45%), Gaps = 85/585 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRIDALEL------GDIIY-------RPLTDGDIVLINRPP 418
E G YV R G D L+L GDI+ R L D D VL NR P
Sbjct: 209 PNEHPGAKYVIRDNG-------DRLDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQP 261
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL + A+
Sbjct: 262 SLHKMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAAV 320
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
Q+++ QS + + + QD+L + + + QM + + P P I K
Sbjct: 321 PLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIEYDQMMNILYWIPEWDGVIPQPAILK 380
Query: 536 ISKDSVWSGKQLFSMLLPP-------DFEYTFPSKD----VYISGGKLISAEGSSWLRDY 584
+WSGKQ+ SM +P D T S + + I+G + +
Sbjct: 381 --PKPLWSGKQMMSMTIPKGINLQRFDEGTTLLSPNDNGMLVINGEIMFGVVDKKTVGAT 438
Query: 585 EGNLFQYLIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
G L +++ + + D + Q+V+ WL G ++ + D + + M EI
Sbjct: 439 NGGLIHTVMREKGSRQCADLFGSIQKVVNFWLLHNGFSIGIGDTIADTET------MKEI 492
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
+ A++ + + D ++AK + R S+E L++A A
Sbjct: 493 TEAIAIAKEKV---EEVTDEAQQNKLTAKHGMTLRE------SFEDNVIRYLNEARDKAG 543
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHE 762
+ +++ L N++ M AGSKG+ + + Q S C+G Q ++F F
Sbjct: 544 RSAEVNLKGL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGF--- 592
Query: 763 LSCAAWNRLRAGDNT--ECAK-SYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
GD T AK Y P + VENS+L GL P E + H++ R+
Sbjct: 593 -----------GDRTLPHFAKDDYSPQSKGFVENSYLRGLTPQEFYFHAMGGREGLIDTA 641
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G
Sbjct: 642 VKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGEDG 685
>gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III subunit, probable [Cryptosporidium
parvum]
Length = 1907
Score = 179 bits (455), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 178/664 (26%), Positives = 286/664 (43%), Gaps = 111/664 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPNI++ E+ +P +A++L ER+N+ N + L ++ + G
Sbjct: 390 GKRVDFSGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPG 449
Query: 378 ELYVCRKGG-----LVRIRRI--DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV + G RR+ + LE+GDI+ R + GDIVL NR PS+H S+++ V
Sbjct: 450 ACYVYKSNGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKV 509
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
V+P + N C+P++ DFDGD ++ ++PQ AR E L+ L L+ ++G
Sbjct: 510 VVMPWRTF-RFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNGEP 568
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC--------PHRFLSPDIFKISKDSVW 542
L++ QD L ++L + L+ Q Q +C P P I K + +W
Sbjct: 569 LIAATQDFLLGMYVLTGRDIFLTRDQFSQ---YCCHFSNGQIPMELPPPTILKPVE--LW 623
Query: 543 SGKQLFSMLLPP--------DFEYTFPSKD----------------VYISGGKLIS-AEG 577
+GKQ+F+M+L P D + +D V + +L++ A G
Sbjct: 624 TGKQVFNMILRPNSNEKERIDVSFELKERDYDSKSDLKDLCPNEGYVVVRHSELLAGAIG 683
Query: 578 SSWL--RDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL-ASHSC 634
L EG F L++ K + + + +L+ +GMT+ + D+ A
Sbjct: 684 KKVLGGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTPNAELLV 743
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
++K L+++ G + QD N SYEK +
Sbjct: 744 AKKNLLED---GYQRVQDEIN------------------------------SYEKGKLTP 770
Query: 695 LSQASVD-----AFKHVFWDIQNLAYKYG----SKDNSLLAMFKAGSKGNLLKLVQHSLC 745
S++ K + DI+N A K N L M+ +G+KG L+ + Q C
Sbjct: 771 HPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMVAC 830
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
+G Q+ + NR C V NSF +GL P E F H
Sbjct: 831 VGQQNVAG-------QRIQNGFTNRTLPHFKMNCVDGR-SRGFVGNSFFSGLQPDEFFFH 882
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
+++ R+ G + RRL+ + DLC YD TVR + G QI+QF Y +G +
Sbjct: 883 TMSGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDG-QIIQFIYGDDGLNP 941
Query: 864 PTGEIGDQPV--GSL-----SACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSN 916
E + V G L S + Y + ++ LE PL N N+ E K SN
Sbjct: 942 MLMEEKLELVNFGKLFKHIYSQTKVHSNFYFLFNNYLNFLENQPLKNDLNISE-NPKPSN 1000
Query: 917 ADQT 920
+ ++
Sbjct: 1001 SKRS 1004
Score = 40.8 bits (94), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + RLG +CSSCG K C GH+G+I + H + + +L IC C
Sbjct: 112 VLDSRLGAHRADAQCSSCGGT-LKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSC 169
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 162/613 (26%), Positives = 272/613 (44%), Gaps = 92/613 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +++ +
Sbjct: 325 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRG 384
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGD+V+ NR P++H
Sbjct: 385 NSQYPGAKYIVRDNG----ERIDLRFHPKPSDLHLQCGYRVERHVRDGDLVIFNRQPTLH 440
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N SP++ DFDGD ++ ++PQ++ R E+ + +Q
Sbjct: 441 KMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQ 499
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V L QM + M P + P I K
Sbjct: 500 IITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILK--P 557
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFP-------SKDVYISGGKLISA-EGS 578
+W+GKQ+FS+++P PD E P V + G+L+
Sbjct: 558 KPLWTGKQVFSLIIPGNVNMIRTHSTHPDDEDDGPYCWISPGDTKVMVEHGELVMGILCK 617
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + +V Y Q V+ WL + G ++ + D +
Sbjct: 618 KTLGTSAGSLLHICMLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYL-- 675
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 676 ----EIQKAIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILND 722
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM +GSKG+ + + Q C+G Q+ P
Sbjct: 723 ARDKT--------GGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIP 774
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E F H++
Sbjct: 775 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGG 818
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
R+ G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E
Sbjct: 819 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVG-QLIQLRYGEDGLCGETVE 877
Query: 868 IGDQPVGSLSACA 880
+ P LS A
Sbjct: 878 FQNLPTIKLSNKA 890
>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
Length = 1015
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 154/580 (26%), Positives = 269/580 (46%), Gaps = 83/580 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+++L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P I W+G
Sbjct: 450 QRNAPLMGIVQDTLCGIYKICRRDVFLTKEQIMNVLLWVPDWDGVIPQPAIIKPRPKWTG 509
Query: 545 KQLFSMLLPP-------DFEYTF-PSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIK 594
KQ+ S+++P D + +F P D V++SGG+L+ + + ++I
Sbjct: 510 KQIISLVIPEGLNLIRKDKKESFSPINDDGVFVSGGELMYGLLNKKTVGASSSGLIHII- 568
Query: 595 RYRD----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
Y + ++F AQ V+ WL G ++ + D + ++
Sbjct: 569 -YNELGPQAAMNFFNGAQTVINYWLLHNGFSIGIGDTIPDRDT-------------IQLI 614
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFW 708
++ N ++ D SA ++E L G ++ ++E + S AL+ A DA
Sbjct: 615 ENAVNKRK---DEVAELTRSATENE-LEPLPGMNVRETFESKVSKALNTARDDAGTVTED 670
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHE 762
+++L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 671 SLKDL--------NNAIQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPH- 721
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 722 --------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 768
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 769 TGYIQRRLVKAMEDVMAKYDGTVRNSLGD-VVQFVYGEDG 807
>gi|397135844|gb|AFO11417.1| RNA polymerase I, partial [Lachancea thermotolerans]
Length = 871
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 169/633 (26%), Positives = 290/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G Y+ R G RID + GDI + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYIIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ +Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L + + Q+ + + P + P +
Sbjct: 324 IVSAQSNKPCMGIVQDTLCGVRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPIILKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 384 LWSGKQILSIAIPSGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLI 443
Query: 590 QYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + K+ L++ Q+V+ WL G ++ + D +A R+I + I R
Sbjct: 444 HVVTREKGPKICARLFSNLQKVVNFWLLHNGFSIGIGDT-IADEKSMREI-TEAIIVAKR 501
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+ ++ ++ N L++AK + R S+E L++A A +
Sbjct: 502 KVEEVTK------EAQAN-LLTAKHGMTLRE------SFEDSVVRYLNEARDKAGRSAEV 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 549 NLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 600 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YDGT RN+ GN ++QF Y +G I Q + ++++
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGEDGMD--AAHIEKQTIDTIAS-- 701
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + I LL L+ ++LE GS+
Sbjct: 702 -SDAAFERRFR-IDLLNPRHALD-PSLLESGSE 731
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 155/580 (26%), Positives = 263/580 (45%), Gaps = 75/580 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +L+ +
Sbjct: 295 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIHKLTELVRNG 354
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R L D D VL NR PS+H
Sbjct: 355 PNEHPGAKYVIRDTG----DRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQPSLH 410
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL + A+ Q
Sbjct: 411 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAAVPLQ 469
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L + + + QM + + P + P +
Sbjct: 470 IVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIDYDQMMNILYWIPGWNGVVPQPTILKPKP 529
Query: 541 VWSGKQLFSMLLPP-------DFEYTFPSKD----VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ SM +P D T S + + + G + + G L
Sbjct: 530 LWTGKQMLSMAIPKGIHMQRYDEGTTLLSPNDNGMMVVDGQIMFGVVDKKTVGATNGGLI 589
Query: 590 QYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ KV L+ + Q+V+ W G ++ + D + + + K + D I
Sbjct: 590 HTVMREKGPKVCSELFGSLQKVVNFWFLHNGFSIGIGDTI--ADASTMKEITDAIALAKE 647
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+ D + +++ N L +AK + R S+E L++A A +
Sbjct: 648 KVDD------VTLEAQQNKL-TAKHGMTLRE------SFEDNVIRYLNEARDKAGRSAEV 694
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 695 NLKSL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPH- 745
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E + H++ R+
Sbjct: 746 --------FAKDDYSPESKGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAE 792
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G
Sbjct: 793 TGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGEDG 831
Score = 44.7 bits (104), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H F+S I K+ +C
Sbjct: 9 VGGLNDPRLGSIDRNFKCQTCG-EGMNECPGHFGHIELAKPVFHIGFISKIKKVCECVCM 67
Query: 101 KC 102
C
Sbjct: 68 HC 69
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 151/578 (26%), Positives = 264/578 (45%), Gaps = 65/578 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L +E + +N +L ++
Sbjct: 330 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNG 389
Query: 373 L-LEKGELYVCRKGG----LVRIRRIDA---LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
+ G Y+ R G LV + + L+ G + R + DGD++L NR PS+H S
Sbjct: 390 PNIHPGAKYIIRPTGEKLNLVGNKTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKES 449
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL EL + +++
Sbjct: 450 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKELALVPLNIVS 508
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWS 543
Q L+ + QD+L + + L+ + + M+ P + P I W+
Sbjct: 509 PQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPRPRWT 568
Query: 544 GKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWLRDYEGN 587
GKQ+ SM+LP P E P D +I GG+L+ + S + G
Sbjct: 569 GKQIISMVLPSGLNLLRLDKDGAPLAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGG 628
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + Y D + F Q V+ WL G ++ + D +++ ++ I
Sbjct: 629 VIHTIFNEYGPDVCMSFFNGTQRVVNYWLLHNGFSIGIGDTIPDANTVAK------IEEA 682
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFK 704
+RE ++ + + D+ + L L G ++ ++E + S AL+ A DA
Sbjct: 683 VRERKE--EVEDITDDATRDAL---------DPLPGMNIRETFESKVSRALNNARDDA-- 729
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
N+ K N + M ++GSKG+ + + Q +G Q R P
Sbjct: 730 ------GNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEGK---RIPFGFK 780
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 781 YRTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 835
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 836 YIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFIYGEDG 872
Score = 47.0 bits (110), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +P+LG + +C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 37 LNDPKLGTIDRAFKCATCEQGIMD---CPGHFGHIELASPVFHIGFLTKIKKLLETVCIN 93
Query: 102 CKTIRKE 108
C I+ +
Sbjct: 94 CGKIKAD 100
>gi|83320464|gb|ABC02859.1| RNA polymerase II largest subunit, partial [Scutellospora
heterogama]
Length = 639
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 153/579 (26%), Positives = 270/579 (46%), Gaps = 86/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLE 375
++GKR D R V+TGDPNI + ++G+P +A+ L E + +N + L + + +
Sbjct: 105 LMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTFPELVTPFNIDLLQGLVENGPSVH 164
Query: 376 KGELYVCRKGGLVRIRRID-----------ALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G YV R G RID L+LG + R L DGDI++ NR PS+H S
Sbjct: 165 PGAKYVIRDTG----ERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPSLHKMS 220
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ V+V+P S+ +N +P++ DFDGD ++ ++PQ++ + E++E+ + KQ+++
Sbjct: 221 MMGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQSVETKAEISEICMVPKQVVS 279
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC---PHRFLSPDIFKISKDSV 541
QS + ++ + QD+L A + L+ + + M+ R P I K +
Sbjct: 280 PQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNILMWVLDWDGRLPIPCILK--PIPL 337
Query: 542 WSGKQLFSMLLP-------------PDFEYTFPS---KDVYISGGKLISAE--GSSWLRD 583
W+GKQ+ SM++P P+ E++ S V I G+L+ +
Sbjct: 338 WTGKQILSMIIPKGINSDNLRHSGHPENEHSDISPGDTKVLIEDGELLCGIVCKKTVGAT 397
Query: 584 YEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
++G + + + +K DFL Q V+ +WL G ++ + D + M I
Sbjct: 398 HQGLVHVIMNELGAEKAKDFLNGCQAVVNQWLLQNGFSIGIGDTIADDET------MKNI 451
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
+ A+ +++ ++ + L A + R ++E + + L+ A A
Sbjct: 452 TNTISNAKQ--RVAEIIAEAQQDKLECAP-GMTIRE------TFEHRVNKELNTARDAAG 502
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF- 759
K A + ++N++ M AGSKG+ + + Q + C+G Q+ P F+F
Sbjct: 503 KS--------AEQSLKEENNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPFGFKFR 554
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D++ ++ + VEN +L GL P E F H++ R+
Sbjct: 555 TLPH---------FTKDDHSPESRGF-----VENCYLRGLTPQEFFFHAMGGREGLIDTA 600
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
G + RRL+ + D+ YDGTVRN+ G+ IVQF
Sbjct: 601 VKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGD-IVQF 638
>gi|449296109|gb|EMC92129.1| hypothetical protein BAUCODRAFT_78328 [Baudoinia compniacensis UAMH
10762]
Length = 1477
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 235/954 (24%), Positives = 387/954 (40%), Gaps = 199/954 (20%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI-- 105
+LG + C +CG K C GHFG +K LH ++ I +L+ +C C I
Sbjct: 74 KLGTSGKNSLCQTCGL-GLKECNGHFGHVKLTLPALHYGYMKKIVDVLSCVCKGCSRILL 132
Query: 106 ---------RKERQKGAGSSRK-----------EQPRVCKYC------VRNPAQWYPRM- 138
R+ R+ G S RK ++ +VC C VR A ++
Sbjct: 133 PEKERRVALRQLRRPGLDSLRKAALCKKISADCKKIKVCPRCAGLNGPVRRQAHHPVKIM 192
Query: 139 -----RFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKV 193
++ S+ K +VE +E ++ K D I + ++ + + P R +
Sbjct: 193 HHRFAKYTSSNAKSKQKPQAMVEFEESFTEAKKASAD-----IERNMRRALDDLTPLRVL 247
Query: 194 LSCKQVSYL---LKDVDPSI--REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKL 248
K++ + L +DPS R E+++ P P R + A S E
Sbjct: 248 HIFKKMPDMDVELLGLDPSRGGRPEYMVWTHVP------APPVAIRPSVAQDAASTE--- 298
Query: 249 FFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSS 308
D+ T L G +++++L++ L + + + +V+ ID N
Sbjct: 299 --DDITNKL-------GDIVQINNLLKAALTLGQPITKVMEMWEFLQVQVAMYID-GNCP 348
Query: 309 GL----RW-----------------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQV 347
GL +W + + GKR D R V++ DPN+ + E+ +P +V
Sbjct: 349 GLGRDSQWGRMMRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPVRV 408
Query: 348 AERLQISERLNSWNWERLSVCISFRLLEK--GELYV--CRKGGLVRIR----------RI 393
A + ER+ S+N E+L I R +K G +V R G + +R +
Sbjct: 409 AMHMTYPERVTSYNIEKLRKRI-LRGTQKHPGANHVVKARDGRKIMLRIMEQNGKLQQVV 467
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
D LE+GD++ R L DGDIVL NR PS+H S+++ VKV P + +N C+P++ DF
Sbjct: 468 DRLEIGDVVERHLEDGDIVLFNRQPSLHKLSILSHKVKVRPWRTF-RLNECVCNPYNADF 526
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGD ++ ++PQ AR E EL+ + L ++G +++ QD +T ++L+ + +
Sbjct: 527 DGDEMNLHVPQTEEARTEAIELMGVKHNLATPKNGTPIIAAIQDFITGSYLISQKDRFFT 586
Query: 514 HLQMQQLQMFC---------------PHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEY 558
Q Q+ F + P IFK S+W+GKQ++++L+ P Y
Sbjct: 587 RRQFCQIVTFMFDGMHVDDPLTGEQRDVQIPPPAIFK--PQSLWTGKQVWNVLMKPHPSY 644
Query: 559 TFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR----------------------- 595
P + GK SA + D N YL+ R
Sbjct: 645 --PVNVNLDAKGKQYSAPLGNTAPDLLPN-DSYLVVRNSEVMCGTMDKAVIGDGKKDSIF 701
Query: 596 ---YRDKVLDFLYAAQEVLCE----WLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
RD ++ AA L + WL+ +G ++ +SD+Y + LR
Sbjct: 702 YVIMRDFGPEYAVAAMNRLAKLSARWLTEQGFSIGISDVYPSGK--------------LR 747
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQ-GEHLSYEKQRSAALSQASVDAFKHVF 707
E ++ N + ++ + + + R E + E Q S LS+ V
Sbjct: 748 EEKE--NLVKAAYAKCVHLIKLYNEGKLQRDPGCDEEQTMENQISGILSE--------VR 797
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ-----HSLAPLSFR-FPH 761
N+ + S+ N+ L M K GSKG+ + + Q +G Q L R PH
Sbjct: 798 QQCGNVCFSELSRFNAPLTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLDGFQDRTLPH 857
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
AK + V NSF +GLNP E H+++ R+
Sbjct: 858 ---------FSKNSRDPPAKGF-----VVNSFFSGLNPTEFIFHAMSGREGLVDTAVKTA 903
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G ++RRLM + DL YD TVRN+ +VQ + +G E +PV
Sbjct: 904 ETGYMSRRLMKSLEDLSARYDHTVRNS-SEGVVQMRFGDDGLDPLDMEGSAKPV 956
Score = 42.0 bits (97), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID + ++I GI+A + ++ + S + G +I P H+ ++A+ ++ GE
Sbjct: 1315 IDGLHTTTNSIMEVASVLGIEAARRTIISEISSVMG--GMDIDPRHMQLLADVMTYRGEV 1372
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ GL+ R S A F AA G D ++G + + G+ +
Sbjct: 1373 LGITRFGLSKMR-----DSVLQLASFEKTPDHLFDAAVGGKRDEVKGVSECIIMGQPVRI 1427
Query: 1252 GTG 1254
GTG
Sbjct: 1428 GTG 1430
>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
Length = 1028
Score = 179 bits (455), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 154/588 (26%), Positives = 263/588 (44%), Gaps = 79/588 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
+++ ++GKR D R V+T DPN+++ ++G+P +A + ER+ +N ERL +
Sbjct: 255 LRNNLMGKRVDFSARTVITPDPNLEIDQVGVPISIASNMTFPERVTLYNMERLKEKVENG 314
Query: 373 LLEKGELYVCRKGGL-----VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
G ++ K G + L+ G I+ R + D D++L NR P++H S++
Sbjct: 315 SEYPGAKFIIHKDGTSVDVELASDEYKQLQPGYIVERHVEDDDLILFNRQPTLHKMSMMG 374
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
VKVLP S+ +N SP++ DFDGD ++ ++PQ++GA+ EL E++ + K +++ Q
Sbjct: 375 HRVKVLPYSTF-RLNVSVTSPYNADFDGDEMNLHLPQSLGAKAELQEMMMVSKNIVSTQG 433
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS--PDIFKISKDSVWSGK 545
++++ QD+L + L+ + V L M M F P + +WSGK
Sbjct: 434 NAPVIAIVQDALLGSVLMTKRDVFLEKDIMMNCCMRLKENFNGELPQPCILKPKQLWSGK 493
Query: 546 QLFSMLLP---------------------PDFEYTFPSKD--VYISGGKLISAEGSS-WL 581
QLFS++L +F+ D V IS G+LIS L
Sbjct: 494 QLFSLVLKGCEVNLFREANQYDDVKKIMGKEFDEDICPMDTKVVISRGELISGVADKRTL 553
Query: 582 RDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + Y + +FL Q V+ W+ G ++ + D +A + + ++
Sbjct: 554 GKGGGSLIHTIFNEYSFIEASNFLNTLQWVVNYWMLQHGYSIGVEDT-IADENTADQV-- 610
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
QQ + +H K+++ + +S ++ AA+++
Sbjct: 611 ----------------QQTLSKAHEEVSKYIKEAQEGKLKSKPGMSLQESFEAAVNKTLN 654
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
D+ +N A SK N + M GSKG+ + Q C+G Q+ F
Sbjct: 655 DSMSSAG---KNSASSL-SKRNRIKTMVVGGSKGSNTNISQIIACVGQQNIEGKRITFGF 710
Query: 758 R---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R PH D+ ++ + V+NS+L GL P E F H++ R+
Sbjct: 711 RKRTLPH---------FEQNDHRPISRGF-----VQNSYLRGLLPQEFFFHTMGGREGLI 756
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D YDGTVR++ GN I+QF Y +G
Sbjct: 757 DTAVKTAKTGYIQRRLIKSMEDFQVKYDGTVRDSAGN-ILQFLYGEDG 803
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 151/578 (26%), Positives = 264/578 (45%), Gaps = 65/578 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L +E + +N +L ++
Sbjct: 330 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNG 389
Query: 373 L-LEKGELYVCRKGG----LVRIRRIDA---LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
+ G Y+ R G LV + + L+ G + R + DGD++L NR PS+H S
Sbjct: 390 PNIHPGAKYIIRPTGEKLNLVGNKTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKES 449
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL EL + +++
Sbjct: 450 MMAHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKELALVPLNIVS 508
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWS 543
Q L+ + QD+L + + L+ + + M+ P + P I W+
Sbjct: 509 PQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPRPRWT 568
Query: 544 GKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWLRDYEGN 587
GKQ+ SM+LP P E P D +I GG+L+ + S + G
Sbjct: 569 GKQIISMVLPSGLNLLRLDKDGAPLAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGG 628
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + Y D + F Q V+ WL G ++ + D +++ ++ I
Sbjct: 629 VIHTIFNEYGPDVCMSFFNGTQRVVNYWLLHNGFSIGIGDTIPDANTVAK------IEEA 682
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFK 704
+RE ++ + + D+ + L L G ++ ++E + S AL+ A DA
Sbjct: 683 VRERKE--EVEDITDDATRDAL---------DPLPGMNIRETFESKVSRALNNARDDA-- 729
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
N+ K N + M ++GSKG+ + + Q +G Q R P
Sbjct: 730 ------GNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEGK---RIPFGFK 780
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 781 YRTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 835
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 836 YIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFIYGEDG 872
Score = 46.6 bits (109), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +P+LG + +C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 37 LNDPKLGTIDRAFKCATCEQGIMD---CPGHFGHIELASPVFHIGFLTKIKKLLETVCIN 93
Query: 102 CKTIRKE 108
C I+ +
Sbjct: 94 CGKIKAD 100
>gi|110669627|gb|ABG81908.1| RNA polymerase II largest subunit [Astrothelium cinnamomeum]
Length = 1021
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 150/568 (26%), Positives = 260/568 (45%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L ++G+P + + L E + +N +L + E
Sbjct: 278 LMGKRVDFSARTVITGDPNLDLDQVGVPRTICKTLTYPETVTPYNISKLHELVRNGPNEH 337
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L DGD ++ NR PS+H S+
Sbjct: 338 PGAKYVIRDTG----ERIDLRHHKRASEITLQYGWKVERHLMDGDFIIFNRQPSLHKESM 393
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ L + +++
Sbjct: 394 MGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVMNLCMVPLNIVSP 452
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q + L+ + QD+L + + V ++ Q+ ++ P + P + +W+G
Sbjct: 453 QGNKPLMGIIQDTLCGIYKICRKDVFITKEQVMNTLLWVPDWDGVVPPPTIVRPRPMWTG 512
Query: 545 KQLFSMLLPPDFE-------YTFPS-KDVYISGGKLISAEGSSWL--RDYEGNLFQYLIK 594
+Q+ SM LP + PS + +++ GG+L+ + + +G + +
Sbjct: 513 EQIISMALPAGLNLFRKASTHNPPSDQGLFVKGGELMYGLFNKKIVGAGPQGVIHSIYNE 572
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ + + F AAQ ++C WL G +V + D + K ++I + E +
Sbjct: 573 KGWEAAVAFFNAAQRIVCFWLLHNGFSVGIGD------TIPDKDTTEQIETVINEQK--A 624
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++ + N L A S R ++E + S AL++A A K +++L
Sbjct: 625 EVEKPTAQAQENKL-EALPGMSIRE------TFENKVSNALNEARNRAGKVTEDSLKDL- 676
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N+ + M ++GSKG+ + + Q + +G Q R P +
Sbjct: 677 -------NNAIQMARSGSKGSAINISQMTAAVGQQSVEGK---RIPFGFKYRSLPHFTKD 726
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + A+ + VENS L GL P E F H++ R+ G + RRL+ +
Sbjct: 727 DYSPEARGF-----VENSCLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 781
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 782 EDVMAKYDGTVRNSLGD-IVQFVYGEDG 808
>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
Length = 871
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 161/582 (27%), Positives = 267/582 (45%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R+ G RID L+ G + R +TD D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRENG----DRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DF GD ++ ++PQ+ R EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFXGDEMNLHVPQSEETRAELSQLCAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L + + Q+ + + P +P I K
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIEIDQVLNMLYWIPDWXGIIPTPAILK--P 381
Query: 539 DSVWSGKQLFSMLLPP-------DFEYTFPS-KD---VYISGGKLISAEGSSWLRDYEGN 587
+WSGKQ+ SM +P D TF S KD + I G + + G
Sbjct: 382 KPLWSGKQILSMAIPNGIHLQRFDDGTTFLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 441
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + ++ L++ Q+V+ W G ++ + D +A R+I + I
Sbjct: 442 LIHVVTREKGPEICARLFSNIQKVVNYWFLHNGFSIGIGDT-IADEKTMREI-TEAIAIA 499
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
++ +D Q L++AK + R S+E L++A A +
Sbjct: 500 KKKVEDVTKEAQAN-------LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGRSA 546
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
++++L N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 547 EVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLP 598
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 599 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 644
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN ++QF Y +G
Sbjct: 645 AXTGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGEDG 685
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM
1558]
Length = 1808
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 167/625 (26%), Positives = 280/625 (44%), Gaps = 87/625 (13%)
Query: 267 DIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCF 326
D E++ L QD K + +R E R + N+ +GKR D
Sbjct: 322 DNEIAGLPQDMQKSGRPIKAIRARLKGKEGRMRGNL---------------MGKRVDFSA 366
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLLEKGELYVCRKG 385
R V+TGDPN++L ++G+P +A L ER+ +N L ++ G Y +
Sbjct: 367 RTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPSTYPGARYYVKDT 426
Query: 386 GLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID +L+ G I+ R L DGD VL NR PS+H S++ VK++
Sbjct: 427 G----ERIDLKYRKSGEPISLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMNY 482
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ + +Q+I+ Q+ + ++ +
Sbjct: 483 STF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIV 541
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+L Q+Q + ++ P +P I K +W+GKQL SM +
Sbjct: 542 QDTLCGIRKFTLRDNYCDWKQVQNILLWLPGWDGTIPTPAILK--PKPMWTGKQLMSMTI 599
Query: 553 PPDFEYTF-----PS------KDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVL 601
P TF PS ++V I G++I + N ++I R V
Sbjct: 600 PKGINITFKNNEKPSPIDITDENVLIDNGEIIHGTIVKNMAGSANNGLVHVIFRELGHVA 659
Query: 602 --DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQL 659
DF A Q ++ WL G +V + D + + + M I + EA++ Q+L
Sbjct: 660 ARDFFSACQMMVNFWLLHYGFSVGIGDTIVDTAT------MAGITNRMVEAKEAV--QRL 711
Query: 660 MVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS-QASVDAFKHVFWDIQNLAYKYG 718
+ ++ N M K + R ++ E ++ + + + D K
Sbjct: 712 IAEAEAN-RMKPKPGMTIRETLEAGIATELNKARDWTGKTAQDNLK-------------- 756
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLRAGDNT 777
+DN++ M +G+KG+ + + Q + +G Q ++F F H + + + G +
Sbjct: 757 -EDNNVKQMVVSGAKGSFINISQMTGVVGQQFVEGKRINFGFKHR-TLPHFPKDDYGPES 814
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDL 835
VENS+L GL P E + H++ R+ G + RRL+ M DL
Sbjct: 815 R--------GFVENSYLRGLTPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDL 866
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEG 860
AYDGTVRN+ G+ +VQF Y +G
Sbjct: 867 KVAYDGTVRNSTGD-VVQFLYGEDG 890
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEI-----------GAVSEVTNPRLGLPNPTNECSS 60
P+ + I G+ + E + SV +I V + +PR+G + +C +
Sbjct: 10 APTRQVKEIQFGVMSPEEIKAFSVAKIEHPEVMDENNRQKVGGLMDPRMGTIDRNFKCQT 69
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
C + C GHFG I+ + H F+ + K+L IC C +R
Sbjct: 70 C-LEGMAECPGHFGHIELARPVFHGGFMVKVKKILECICFSCGKLR 114
Score = 42.4 bits (98), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D R++ +N GI+AG L I G + HL ++ + + +
Sbjct: 1336 VDGVDAVRTYSNNCYEVYQTLGIEAGRNALFKELNGVIEMGGSYVNYRHLALLCDLMCSK 1395
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G+ + + G+ + + + +A F ++AA G VD+ G + + G++
Sbjct: 1396 GQLMSITRHGI-----NRTDAGALSRASFEETVEILLEAAAVGDVDDCHGVAENVLLGQI 1450
Query: 1249 PSVGTGGHFDI 1259
+GTG FD+
Sbjct: 1451 APMGTGA-FDV 1460
>gi|66475716|ref|XP_627674.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
Length = 1871
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 178/664 (26%), Positives = 286/664 (43%), Gaps = 111/664 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPNI++ E+ +P +A++L ER+N+ N + L ++ + G
Sbjct: 354 GKRVDFSGRTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPG 413
Query: 378 ELYVCRKGG-----LVRIRRI--DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV + G RR+ + LE+GDI+ R + GDIVL NR PS+H S+++ V
Sbjct: 414 ACYVYKSNGSKSSLRYANRRVVSERLEIGDIVERHMKTGDIVLFNRQPSLHRLSIMSHKV 473
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
V+P + N C+P++ DFDGD ++ ++PQ AR E L+ L L+ ++G
Sbjct: 474 VVMPWRTF-RFNECACAPYNADFDGDEMNLHLPQNELARSESKHLMGLMNNLVTPRNGEP 532
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC--------PHRFLSPDIFKISKDSVW 542
L++ QD L ++L + L+ Q Q +C P P I K + +W
Sbjct: 533 LIAATQDFLLGMYVLTGRDIFLTRDQFSQ---YCCHFSNGQIPMELPPPTILKPVE--LW 587
Query: 543 SGKQLFSMLLPP--------DFEYTFPSKD----------------VYISGGKLIS-AEG 577
+GKQ+F+M+L P D + +D V + +L++ A G
Sbjct: 588 TGKQVFNMILRPNSNEKERIDVSFELKERDYDSKSDLKDLCPNEGYVVVRHSELLAGAIG 647
Query: 578 SSWL--RDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYL-ASHSC 634
L EG F L++ K + + + +L+ +GMT+ + D+ A
Sbjct: 648 KKVLGGGSKEGLFFYILLENNAKKSSECMGRISRFVSRYLANKGMTIGIDDVTPNAELLV 707
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
++K L+++ G + QD N SYEK +
Sbjct: 708 AKKNLLED---GYQRVQDEIN------------------------------SYEKGKLTP 734
Query: 695 LSQASVD-----AFKHVFWDIQNLAYKYG----SKDNSLLAMFKAGSKGNLLKLVQHSLC 745
S++ K + DI+N A K N L M+ +G+KG L+ + Q C
Sbjct: 735 HPGLSLEDTLELKVKKILDDIRNEAGKASHISLPPSNKPLLMYLSGAKGQLINIAQMVAC 794
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
+G Q+ + NR C V NSF +GL P E F H
Sbjct: 795 VGQQNVAG-------QRIQNGFTNRTLPHFKMNCVDGR-SRGFVGNSFFSGLQPDEFFFH 846
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
+++ R+ G + RRL+ + DLC YD TVR + G QI+QF Y +G +
Sbjct: 847 TMSGREGLVDTAVKTAETGYMQRRLVKALEDLCIKYDQTVRTSDG-QIIQFIYGDDGLNP 905
Query: 864 PTGEIGDQPV--GSL-----SACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSN 916
E + V G L S + Y + ++ LE PL N N+ E K SN
Sbjct: 906 MLMEEKLELVNFGKLFKHIYSQTKVHSNFYFLFNNYLNFLENQPLKNDLNISE-NPKPSN 964
Query: 917 ADQT 920
+ ++
Sbjct: 965 SKRS 968
Score = 40.4 bits (93), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + RLG +CSSCG K C GH+G+I + H + + +L IC C
Sbjct: 76 VLDSRLGAHRADAQCSSCGGT-LKTCGGHWGYIDLQQPVFHVGYFKHLYGVLCCICKSC 133
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 156/581 (26%), Positives = 265/581 (45%), Gaps = 77/581 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR + R V+TGDP ++L E+G+P +A L ER+ +N LS +
Sbjct: 350 LRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNG 409
Query: 373 LLE-KGELYVCRKGG----LVRIRRID-ALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
+ G YV R G L RR D AL+ G I+ R L DGD +L NR PS+H S++
Sbjct: 410 PNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMM 469
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
+ +K++ S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+++ Q
Sbjct: 470 SHRIKLMDYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 528
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGK 545
+ + ++ + QD+L LL + Q+QQ+ ++ + P + WSGK
Sbjct: 529 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGK 588
Query: 546 QLFSMLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
Q+ SM +P F KD VYI G+++ + + ++I
Sbjct: 589 QILSMCIPKGIN-VFLDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHII 647
Query: 594 KRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
R + V+ F Q V+ WL G ++ + D + + K D I + A+
Sbjct: 648 FREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGD------TVADKATTDSINQTIAAAK 701
Query: 652 DTCNFQQLMVDSHMNFLMSAKDS----ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
M+++ A+ E+ +L+ S+E + L+QA D H
Sbjct: 702 AAV----------MDYIKYARHDWLKVEAGMTLRE---SFEANVNRVLNQARDDVGNHAE 748
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPH 761
+ + N++ M +GSKG+ + + Q S C+G Q P FR PH
Sbjct: 749 TSLPDF--------NNVKQMVVSGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPH 800
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D T ++ + VENS+L GL E F H++ R+
Sbjct: 801 ---------FTKDDFTPESRGF-----VENSYLRGLTAQEFFFHAMAGREGLIDTAVKTA 846
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ N ++QF+Y +G
Sbjct: 847 ETGYIQRRLVKALEDVMVCYDGTVRNST-NNVIQFAYGEDG 886
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
+ +++PRLG + +C +CG + + C GHFG I + H +L + K+L +C
Sbjct: 54 IGGLSDPRLGTLDRNYKCQTCG-EGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCF 112
Query: 101 KCKTIRKER----------QKGAGSSRKEQPRVCKYCVR 129
C ++ + + GS ++ RV +YC +
Sbjct: 113 HCGKLKADTVTDPVFDQIVKATRGSKKRRFQRVWEYCSK 151
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 179 bits (454), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 152/585 (25%), Positives = 262/585 (44%), Gaps = 80/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L +S
Sbjct: 351 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNG 410
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R +L G + R + DGD++L NR PS+H S+
Sbjct: 411 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNRQPSLHKESM 470
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L + +++
Sbjct: 471 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLALVPMNIVSP 529
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + L+ Q+ L M+ P P I K W
Sbjct: 530 QRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMMWVPDWDGVIPPPAILK--PRPRW 587
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I GG+L+ S + G
Sbjct: 588 TGKQIISMALPSGLNLLRVDKDNSALSEKFAPLNDGGLLIHGGQLMYGMFSKKTVGASGG 647
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y + F AQ ++ WL G ++ + D + + + I
Sbjct: 648 GVIHTIFNEYGPGTAVAFFNGAQAIVNYWLLHNGFSIGIGD------TIPDAVTIQRIEN 701
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
+RE + SA D+ + L G ++ ++E + S AL+ A +A
Sbjct: 702 CVRERKKEVE----------TITASATDN-TLEPLPGMNVRETFESKVSRALNNARDEAG 750
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF- 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 751 SETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYR 802
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 803 TLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 848
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 849 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 892
Score = 49.7 bits (117), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIR 106
I+
Sbjct: 114 KIK 116
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 153/606 (25%), Positives = 265/606 (43%), Gaps = 107/606 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+ DPN+++ ++G+P VA L + ER+ ++N + +
Sbjct: 350 IRGNLMGKRVDFSARTVINPDPNLEIDQVGVPTSVALTLTVPERVTNFNINTMKQYVDRG 409
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G +RID L+ G I+ R L D D+++ NR P++H
Sbjct: 410 PNQHPGAKYIIRDDG----QRIDLRHARNAMDLNLQPGYIVERHLKDDDVIIFNRQPTLH 465
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N SP++ DFDGD ++ ++PQ++G R E+ E++ + +
Sbjct: 466 KMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSLGTRAEVEEIMMVQRN 524
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
++ Q+ R ++ + QD+LTA L + M QL M+ P+ R P + K +
Sbjct: 525 ILTPQANRPVMGIIQDTLTAIRKLTFRDTFIEKDDMMQLLMWYPNWDGRLPEPALLKPKE 584
Query: 539 DSVWSGKQLFSMLLPPDFEYT--FPSKDVYIS-----GGKLISAEGSSWLRDYE------ 585
+W+GKQL SM+LP + D + G +I AE ++ + ++
Sbjct: 585 --LWTGKQLVSMVLPDKINLVQFYSQHDGSVDTPRDKDGNVIEAEDATHITQHDTRVLIQ 642
Query: 586 -------------------GNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSD 626
G + +++ ++ F Q V+ WL + G ++ + D
Sbjct: 643 NGKLISGILCKKTMGARANGVIHVIMMEHGHERARQFYGNVQTVVNNWLLIHGHSIGIGD 702
Query: 627 LYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL- 685
+H+ DT + ++ + +N L+ + G +
Sbjct: 703 AIADTHTY-----------------DTIDSEKAAANEKVNELIQDAQLDKIEPSPGHTIR 745
Query: 686 -SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
++E + + L+Q V K S+ N+ AM AGSKG+ + + Q
Sbjct: 746 QTFEAKVNKNLNQ--------VIKKTGGAVQKALSEHNNFKAMSTAGSKGSEINISQIIA 797
Query: 745 CLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTG 796
C+ Q+ P FR PH + Y P A V +S++ G
Sbjct: 798 CVSQQNVEGKRIPFGFRHRSLPHFVK----------------DDYGPHACGFVFSSYIQG 841
Query: 797 LNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
L P E F H++ R+ G + RRL+ M L YDGTVRN+ G+ +VQ
Sbjct: 842 LEPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKSMEGLRLEYDGTVRNSTGD-LVQL 900
Query: 855 SYNIEG 860
Y +G
Sbjct: 901 HYGEDG 906
Score = 41.2 bits (95), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 9 GLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKA 68
G+ P I G I+T +E V + G +S+ PR+G + C +C +
Sbjct: 22 GILSPDEIKAGSVCEITTPEHQEN-GVPKPGGLSD---PRMGPIDRDLRCETCHGTASE- 76
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG I ++H +S I ++L IC C +
Sbjct: 77 CPGHFGHIDLAKPVVHVGMISKIVQVLRCICKSCSKL 113
>gi|110669625|gb|ABG81907.1| RNA polymerase II largest subunit [Echinoplaca strigulacea]
Length = 1017
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 161/587 (27%), Positives = 259/587 (44%), Gaps = 94/587 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P VA L E + +N ++L + +
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIQKLHQLVKNGPNDH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R +TDGD ++ NR PS+H S+
Sbjct: 335 PGAKYVIRDTG----ERIDLRHHKRAGELSLQYGWKVERHITDGDFIIFNRQPSLHKESM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ L + +Q+++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRSEVANLCWVPRQILSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK-ISKDSV 541
L+ + QDSL + + V L++ + + ++ P P I K I K
Sbjct: 450 AKNGPLMGIVQDSLCGFYKMTRKDVYLNYEDVMNILLWVPDWDGTIPQPAIIKPIPK--- 506
Query: 542 WSGKQLFSMLLP--------------PDFEYTFPSKDVY--ISGGKLISAEGSSWLRDYE 585
W+GKQ+ S++LP P F FP DV+ I G+L+ + + +
Sbjct: 507 WTGKQVVSLILPEGLSLHRVDGGKNEPGF---FPRTDVHVLIQNGELVFGQMTKQVVGAA 563
Query: 586 GNLFQYLIKRY--RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
G ++ D L F +Q V+ WL G +V + D + + EI
Sbjct: 564 GGGVVHVTTAEFGFDAALKFFKGSQVVINYWLLHNGFSVGIGDTIPDKSTVD---AIGEI 620
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
F +E + + + L E+ SL + L+ + S +
Sbjct: 621 FTSKKEK--VKEITAMAQANELEPLPGMTVRETFESLVAKELNDARNESGST-------- 670
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ------HSLAPLSF 757
V +++L N+ LAM +GSKG+ + + Q S +G Q +SL
Sbjct: 671 --VVKRLKDL--------NNTLAMSNSGSKGSQINIAQMSAAVGQQNVEGQTYSLGFAYR 720
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFS 815
PH Y P + +ENS+L GL P E + H+++ R+
Sbjct: 721 SLPH----------------FTKDDYSPESGGFIENSYLRGLTPTEFYFHAMSGREGLID 764
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M DL YDGTVRN+ G+ IVQF Y +G
Sbjct: 765 TAVKTAETGYIQRRLVKSMEDLIVKYDGTVRNSLGD-IVQFVYGEDG 810
Score = 40.0 bits (92), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG I+ + H F++ I KLL ++C C I
Sbjct: 2 CPGHFGHIELAVPVFHVGFITKIKKLLETVCHNCGKI 38
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 155/586 (26%), Positives = 260/586 (44%), Gaps = 79/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + ++G+P +A L E + +N ERL + +
Sbjct: 265 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 324
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 325 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQP 380
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 381 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 439
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ Q+ R ++ + QD+L + + + + M+ + +P I K
Sbjct: 440 PKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILK 499
Query: 536 ISKDSVWSGKQLFSMLLPPDFEY---------------TFPSKDVYISGGKLISAE-GSS 579
+W+GKQ+F++++P T V I G+L++
Sbjct: 500 --PRPLWTGKQVFNLIIPKQINLLRYSAWHNDSEKGPITPGDTQVRIEKGELLTGTLCKK 557
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
L G+L + + D FL Q ++ WL ++ + D +A S KI
Sbjct: 558 TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT-IADASTMEKI 616
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALS 696
+E + S + L+ A + + G + S+E + + L+
Sbjct: 617 --NETISNAK--------------SKVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLN 660
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
+A DA A K S+ N+L AM AGSKG+ + + Q + C+G Q+
Sbjct: 661 KARDDAGSS--------AEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK-- 710
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P D ++ + VENS+L GL P E F H++ R+
Sbjct: 711 -RIPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDT 764
Query: 817 NADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 765 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 809
>gi|329132883|gb|AEB78332.1| RNA polymerase II largest subunit [Parabodo caudatus]
Length = 1035
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 155/576 (26%), Positives = 257/576 (44%), Gaps = 74/576 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR + R V+TGDPNI + E+G+P VA L ER+N N RL+ +
Sbjct: 238 LMGKRVNFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNHLNRHRLTQIVRSSQYPS 297
Query: 377 GELYVCRKGGLVRI-------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
V G + R+ R+ LE+GDI+ R + +GD+VL NR P++H S++
Sbjct: 298 ANAIVSNSGTVWRLNGMKPERRQQLTLEIGDIVERQVLNGDVVLFNRQPTLHRMSMMGHR 357
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 358 VRVLNYNTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSA 416
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS------PDIFKISKDSVWS 543
+ + QDSL + + + V L +Q + M+ S P I K +W+
Sbjct: 417 PCMGIVQDSLLGSWRITDKEVFLDKYFVQNVFMWLSDLIPSLTELPIPAILK--PRPLWT 474
Query: 544 GKQLFSMLL------PPDFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
GKQ+FS++L + + +FP D I G ++ + L F ++I
Sbjct: 475 GKQMFSLILRETNITRENLKKSFPHDDAGTLIRNGDVLVGQVDKGLIGASPGSFIHVIFN 534
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC-SRKILMDEIFYGLREAQD 652
R D V F+ Q + +L +V + D ++ S K ++ + +R
Sbjct: 535 DRGSDAVAQFINGVQRLTTHYLYHFSFSVGVQDTLGDENTLRSVKEMIADARKQVRNRGS 594
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
N ++L + M +L G S+E + ++ L+ A V +
Sbjct: 595 AANEKRLTRRAGM-------------TLMG---SFEFEVNSILNNVREKASPMVKNGVH- 637
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPHELSCA 766
+ NS M AGSKG+ L + Q +G Q+ P FR PH +
Sbjct: 638 -------RRNSFRVMVDAGSKGSPLNIYQIVAAVGQQNIFGARIPFYFRRRTLPHFM--- 687
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + +K ++ VE GL P E F H++ R+ G
Sbjct: 688 ------LDDYGDASKGHVSRGYVE-----GLKPYEFFFHTMGGREGLIDTAVKTAETGYF 736
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+L+ M DL AYDGTVRNA ++VQF+Y +G
Sbjct: 737 QRKLVKAMEDLHVAYDGTVRNA-DQEVVQFTYGEDG 771
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 156/591 (26%), Positives = 267/591 (45%), Gaps = 92/591 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ L E + +N ++L
Sbjct: 344 IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQ-----E 398
Query: 373 LLEKGEL-YVCRKGGLVRI------RRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHS 424
L+ +G+ Y K R+ R D L+ G + R + DGDI++ NR P++H S
Sbjct: 399 LVNRGDTQYPGAKENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMS 458
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ VK+LP S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +QLI
Sbjct: 459 MMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLIT 517
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSV 541
Q+ + ++ + QD+L A ++ + V + M L M+ P + P I K +
Sbjct: 518 PQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILK--PKPL 575
Query: 542 WSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGSSWL 581
W+GKQ+FS+++P PD E + P K V I G+L+S S +
Sbjct: 576 WTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTV 635
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
GNL + ++ Y+ Q V+ WL G T+ + D + + +
Sbjct: 636 GKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGD------TIADQATY 689
Query: 641 DEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
+I +R+A QD + + + + ++ + + L+ + R+ + +Q S
Sbjct: 690 LDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKS 749
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLS 756
+ F N+ +M +GSKG+ + + Q C+G Q+ P
Sbjct: 750 LSEF------------------NNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPFG 791
Query: 757 FR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRD 811
FR PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 792 FRHRTLPHFIK----------------DDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 835
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ Q+VQ Y +G
Sbjct: 836 GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA-QMVQLRYGEDG 885
Score = 40.8 bits (94), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSV--MEIGAVSE--------VTNPRLGLPNPTNECS 59
+ P I++ + GI E +++SV +E V E + +PR G+ + C
Sbjct: 8 FQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+C A + C GHFG ++ + H FL+ K+L +C C
Sbjct: 68 TC-AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYC 109
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/585 (25%), Positives = 262/585 (44%), Gaps = 80/585 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L +S
Sbjct: 351 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNG 410
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R +L G + R + DGD++L NR PS+H S+
Sbjct: 411 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNRQPSLHKESM 470
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L + +++
Sbjct: 471 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLALVPMNIVSP 529
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + L+ Q+ L M+ P P I K W
Sbjct: 530 QRNGPLMGIVQDTLCGIYKICRRDTFLTKEQVMNLMMWVPDWDGVIPPPAILK--PRPRW 587
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I GG+L+ S + G
Sbjct: 588 TGKQIISMALPSGLNLLRVDKDNSALSEKFAPLNDGGLLIHGGQLMYGMFSKKTVGASGG 647
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y + F AQ ++ WL G ++ + D + + + I
Sbjct: 648 GVIHTIFNEYGPGTAVAFFNGAQAIVNYWLLHNGFSIGIGD------TIPDAVTIQRIEN 701
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
+RE + SA D+ + L G ++ ++E + S AL+ A +A
Sbjct: 702 CVRERKKEVE----------TITASATDN-TLEPLPGMNVRETFESKVSRALNNARDEAG 750
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF- 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 751 SETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYR 802
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 803 TLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 848
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ I+QF Y +G
Sbjct: 849 VKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-IIQFIYGEDG 892
Score = 49.3 bits (116), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIR 106
I+
Sbjct: 114 KIK 116
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 178/637 (27%), Positives = 291/637 (45%), Gaps = 86/637 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTHLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVRVMPFSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L L + Q+ L + P +P I K
Sbjct: 511 IVSAQSNKPCMGIVQDTLCGIRKLTLRDNFIEFDQVLNLLYWVPDWDGVIPTPAILK--P 568
Query: 539 DSVWSGKQLFSMLLPP-------DFEYTFPS-KD---VYISGGKLISAEGSSWLRDYEGN 587
+WSGKQ+ S+ +P D TF S KD + I G + + G
Sbjct: 569 KPLWSGKQILSIAIPKGIHLQRFDEGTTFLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + ++ L++ Q+V W G + + D + M EI
Sbjct: 629 LIHVVTREKGPQICAKLFSNIQKVTNYWFLHNGFSTGIGDTIADGET------MREITGT 682
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ +++ ++ N L++AK + R S+E L++A A +
Sbjct: 683 IAEAKRKV--EEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGR-- 731
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
LA + N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 732 ------LAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 785
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 786 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ + D+ YD T RN+ GN ++QF Y +G G I Q + ++
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDGID--AGHIEKQSIDTIGG 888
Query: 879 CAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKS 915
S+AA+ + I LL T LN ++LE G++ S
Sbjct: 889 ---SDAAFEKRYR-IDLLNTENSLN-PSLLESGAEIS 920
Score = 41.6 bits (96), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHIG 94
Query: 87 FLSDIAKLLNSICPKC 102
F+S I K+ IC C
Sbjct: 95 FISKIKKVCECICMHC 110
>gi|397135930|gb|AFO11460.1| RNA polymerase I, partial [Zygoascus hellenicus]
Length = 871
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 156/574 (27%), Positives = 262/574 (45%), Gaps = 71/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLSYPEIVTPYNIQKLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----ERIDLRYHKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L L L Q+ + + P+ + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKLSLRDTFLDFDQVMNILFWVPNWDGVVPTPAVLKPRPMWTG 387
Query: 545 KQLFSMLLPPD-----FEYTFPSKDVYISGGKLISAEGSSWLRDYE------GNLFQYLI 593
KQ+ S+ +P F+ P+ +G + E + D + G L ++
Sbjct: 388 KQMVSLAIPSGIFMQRFDEGNPANSPKDNGMLVYKGEIMYGVVDKKTVGATAGGLIHTIM 447
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ V F Q+++ WL G +V + D S + M I + EA+
Sbjct: 448 REKGPYVAAGFFGNIQKIVNFWLLHHGFSVGIGDTIADSAT------MTGIAATISEAKQ 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDS----ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+ ++M A+++ E +L+ S+E S L+QA A +
Sbjct: 502 KVS----------EYIMEAQENKLAPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAET 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
+++ N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 549 SLKD--------SNNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFTKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGT RN+ GN I+QF Y +G
Sbjct: 653 RLVKALEDVMVQYDGTTRNSLGN-IIQFVYGEDG 685
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 158/574 (27%), Positives = 261/574 (45%), Gaps = 71/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N E+L + E
Sbjct: 355 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIEKLHQLVENGPNEH 414
Query: 376 KGELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G L RR A LE G + R L GD ++ NR PS+H S++
Sbjct: 415 PGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHR 474
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++ Q
Sbjct: 475 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSPQKNG 533
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
L+ + QDSL A+ + V L+ Q+ ++ P+ P I+K W+GKQ
Sbjct: 534 PLMGIVQDSLAGAYKMCRRDVFLTKEQIMNCMLWVPNWDGVIPQPAIYK--PRPRWTGKQ 591
Query: 547 LFSMLLP--------PDFEYTFPSKD--VYISGGKLISA--EGSSWLRDYEGNLFQYLIK 594
L SM++P D + P KD + I G+L+ S G + +
Sbjct: 592 LISMVIPKEVSIFNGTDSGESAPLKDEGLLIQAGQLMYGLLTKKSVGASAGGIVHISYNE 651
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ + FL Q+V+ WL G ++ + D + + ++ Q
Sbjct: 652 LGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTIPDAVTIAK-------------VQAHI 698
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
+ ++ V + + + +A + E+ + ++E + S AL+QA A +++
Sbjct: 699 DDEKAEV-ARLTAMATANELEALPGMN-VRATFENKVSMALNQARDKAGTTTQKSLKD-- 754
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSCAAW 768
N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 755 ------SNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH------- 801
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + A+ + VENS+L GL P E F H++ R+ G + R
Sbjct: 802 --FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 854
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + DL YDGTVRN+ G+ IVQF Y +G
Sbjct: 855 RLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDG 887
>gi|119643881|gb|ABL85592.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 179 bits (454), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 149/577 (25%), Positives = 259/577 (44%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R+ G RID +L+ G + R + DGD ++ NR PS+H S
Sbjct: 335 PGAKYVIRESG----ERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKEST 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R + +L + +++
Sbjct: 391 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAGINQLCMVPLNIVSP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + L V LS Q+ + ++ P + P + W+G
Sbjct: 450 QRNGPLMGIVQDTLCGIYKLCRRDVFLSKEQVMNILLWIPDWDGILPQPAILKPRPKWTG 509
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISA--EGSSWLRDYEGNLFQYLI 593
KQ+ S+++P T + + +SGGKL+ S G +
Sbjct: 510 KQIISLVIPSGLNLTRAGGEGFSPLNDDGLLVSGGKLMYGLLSKKSVGATSSGIIHIIFN 569
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D + +++ +D
Sbjct: 570 EKGPEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGT-------------IKQIEDA 616
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ + + + + L G ++ ++E + S AL++A DA ++
Sbjct: 617 VNKQK----EDVAVITQSATANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 672
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 673 DL--------NNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 720
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 721 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 770
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 771 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 806
>gi|358342624|dbj|GAA33483.2| DNA-directed RNA polymerase III subunit RPC1 [Clonorchis sinensis]
Length = 1462
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 164/616 (26%), Positives = 273/616 (44%), Gaps = 95/616 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL----------- 365
+LGKR + R V++ DPN+++ E+ +P A+ L R+ ++N + L
Sbjct: 418 LLGKRTNYTARTVISPDPNLRIDEVCVPDHCAKLLTFPARVTTFNLDFLRSLVLNGPNRY 477
Query: 366 --SVCISFRLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIV 412
++ +S++L + + G ++R A L+ GD++ R L DGDI+
Sbjct: 478 PGALFVSYKLRGEQKRQAEATGSSDVVKRFLASARAREDVARHLQPGDVVERHLVDGDII 537
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVEL 472
L NR PS+H S+ A V P + NP CC+PF+ DFDGD ++ ++PQ AR E
Sbjct: 538 LFNRQPSLHRVSIQAFKAVVKPFRTF-RFNPCCCNPFNADFDGDEMNVHLPQTEAARAEA 596
Query: 473 TELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL--------QMFC 524
L+ + +++ ++G L+S QD +TA HLL V + Q QL ++
Sbjct: 597 KHLMLSLRNIVSPKNGEPLISPIQDLITATHLLTLKDVFFTRDQACQLASQIIAGNHLYQ 656
Query: 525 PHRFLSPDIFKISKDSVWSGKQLFSMLLPP------DFEYTFPSKDVYISGGK------- 571
P + P I K + +W+GKQLFS++L P +K VY + G+
Sbjct: 657 PIKLPKPAIMKPRR--LWTGKQLFSLILSPHPSTGVKINIRQATKSVYSNRGEEMCPNDG 714
Query: 572 LISAEGSSWLR----------DYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGM 620
I S L + ++F L++ Y + D ++ + +L+ RG
Sbjct: 715 FILIHNSQLLAGCADKKLLGGGSKASIFYSLLRNYGSETCADAMWRLARISLFYLAHRGF 774
Query: 621 TVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSL 680
++ L ++ + K + ++ + TC+ + N L +L
Sbjct: 775 SIGLGEVMPSQELVKSKTKVIDVGF------STCD--DYIHQYEKNTLKCNPGCSMEDTL 826
Query: 681 QGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLV 740
+ +LS E + + A+ H NS L M ++GSKG+ L +
Sbjct: 827 ES-NLSQELSKIRDEAGAACKRQLH--------------PSNSPLVMAQSGSKGSFLNIS 871
Query: 741 QHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPL 800
Q C+G Q R P ++ + G T AK + V NSF +GL P
Sbjct: 872 QMIACVGQQ---VIGGKRVPDVINGRSLIHFPRGSRTPEAKGF-----VGNSFYSGLTPS 923
Query: 801 ECFIHSVTSRDS---SFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E F H+++ R+ + AD G + RRL+ F+ DL AYD TVR++ G+ I+QF Y
Sbjct: 924 EFFFHAMSGREGLTDTAVKTADT-GYMQRRLIKFLEDLTIAYDNTVRDSRGD-IIQFCYG 981
Query: 858 IEGTSTPTGEIGDQPV 873
+G E+ PV
Sbjct: 982 SDGLDPLEMEVETFPV 997
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 153/584 (26%), Positives = 271/584 (46%), Gaps = 77/584 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + +
Sbjct: 353 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGELVDNG 412
Query: 372 RLLEKGELYVCRKGGLVRIRRIDA-----------LELGDIIYRPLTDGDIVLINRPPSI 420
+ G YV R G RID L+ G + R + DGD++L NR PS+
Sbjct: 413 PDIHPGARYVIRNTG----ERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSL 468
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ ++V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL++L +
Sbjct: 469 HKESMMGHRIRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPL 527
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
Q+++ Q L+ + QD+L + + V L+ Q+ + ++ P P I K
Sbjct: 528 QIVSPQRNGPLMGIVQDTLCGIYKICSRDVFLTKEQIMNILLWVPDWDGVIPQPAILK-- 585
Query: 538 KDSVWSGKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWL 581
W+GKQ+ SM+LP P E P D + + G+L+ S +
Sbjct: 586 PRPRWTGKQVISMVLPAGLNLLRVDRDKAPLSEKFSPLTDGGLLVHSGELMYGMFSKKTV 645
Query: 582 RDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + Y ++ ++F AQ V+ WL G ++ + D + + +KI
Sbjct: 646 GATGGGIIHTIFNEYGPELAMNFFNGAQTVVNYWLLHHGFSIGIGDT-IPDLATIQKI-- 702
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ ++ VD SA D+ + L G ++ ++E + S AL+ A
Sbjct: 703 ----------EEAVRVRKEEVD---EITASATDN-TLEPLPGMNVRETFESKVSRALNNA 748
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
+A ++L N+ + M ++GSKG+++ + Q + +G Q S+ R
Sbjct: 749 RDEAGTETEKSFKDL--------NNAVQMARSGSKGSIINISQMTAVVG-QQSVE--GKR 797
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D + ++ + VENS+L GL P E F H++ R+
Sbjct: 798 IPFGFKYRTLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAV 852
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ +VQF Y +G
Sbjct: 853 KTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VVQFLYGEDG 895
Score = 47.4 bits (111), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 44 VTNPRLGLPNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+ +PRLG + C++C G D C GHFG I+ + H FL+ I KLL ++C
Sbjct: 55 LNDPRLGTIDRNWRCATCEEGIND---CPGHFGHIELSTPVFHIGFLTKIKKLLETVCHN 111
Query: 102 CKTIR 106
C I+
Sbjct: 112 CGKIK 116
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 155/579 (26%), Positives = 263/579 (45%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + +
Sbjct: 348 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKTGPNDH 407
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 408 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESM 463
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 464 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 522
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V LS + + ++ P P I K W
Sbjct: 523 QRNGPLMGIVQDTLCGIYKICRRDVFLSKEMVMNILLWVPDWDGVIPQPAILKPRPK--W 580
Query: 543 SGKQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQ+ S+++PP E P D + +SGG+L+ + N ++I
Sbjct: 581 TGKQIISLIIPPGLNLFRSSSEGPSPLNDDGLQVSGGELMYGLFNKKSVGATSNGVVHII 640
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ D + F Q V+ WL G ++ + D + D + EA
Sbjct: 641 FNEKGPDAAMSFFNGCQTVVNYWLLHNGFSIGIGD-----------TIPDRVTIQAIEA- 688
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
N Q+ V SA ++E L G ++ ++E + AL++A DA
Sbjct: 689 -AVNEQKAEV---AEITRSATENE-LEPLPGMNVRETFESKVQKALNKARDDAGTVTEKS 743
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF---PHEL 763
++++ N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 744 LKDI--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH-- 793
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 794 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 841
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 842 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 879
Score = 44.3 bits (103), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + +C +C ++ C GHFG I+ + H F++ KLL ++C C
Sbjct: 55 LADPRLGSIDRAIKCGTCD-ENMSECPGHFGHIELAVPVFHVGFMTKKKKLLETVCHNCG 113
Query: 104 TI 105
I
Sbjct: 114 KI 115
>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
marinus ATCC 50983]
Length = 1667
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 165/609 (27%), Positives = 275/609 (45%), Gaps = 118/609 (19%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL------- 365
I+ ++GKR D R V+TGDPNI + ++G+P +A L +ER+ N+ ++
Sbjct: 361 IRGNLMGKRVDFSARTVITGDPNIDIDQVGVPKSIAMNLTFAERVTPLNYAKMRELVMRG 420
Query: 366 --------------SVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDI 411
+ CI R ++ + V R G V R + D D+
Sbjct: 421 PTSWPGAKRIIRDDNSCIDLRFTKQAQDIVLRYGWRVE--------------RHMQDNDL 466
Query: 412 VLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVE 471
V+ NR PS+H S++ K+LP S+ +N SP++ DFDGD ++ ++ Q+ R E
Sbjct: 467 VIFNRQPSLHKMSMMGHRAKILPFSTF-RLNLSVTSPYNADFDGDEMNMHLAQSHETRAE 525
Query: 472 LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLS 530
+ ++ + +Q+++ Q R ++ + QDSL A+ LL + D+ + + MQ L P +
Sbjct: 526 IRNIMMVPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIEKDMCMQLLMWLLPASWDG 585
Query: 531 -----PDIFKISKDSVWSGKQLFSMLLPP----------------DFEYTFPSKDVYISG 569
P I K +WSGKQLFSMLLP D ++ V I
Sbjct: 586 GNMPMPCILK--PRPLWSGKQLFSMLLPKISLQKDAGIASKNRGDDPWFSRSDCRVIIQE 643
Query: 570 GKLISA------EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTV 622
G+++S G+S G L Y ++ F+ Q ++ WL G TV
Sbjct: 644 GEIMSGVICKKTVGAS-----SGGLIHITWLDYGPERTKQFIGGIQRLVNFWLLHHGFTV 698
Query: 623 SLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQG 682
+D+ +A+ +K+ D + AQ + ++L++D+ L +++ +SLQ
Sbjct: 699 GCADI-VANDGTMQKV-ADTL------AQAKRDVRKLVLDAQRGRL----EAQPGKSLQQ 746
Query: 683 EHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQH 742
S+E + + L+QA D+ + LA N+++AM +GSKGN + + Q
Sbjct: 747 ---SFEARVNQRLNQAREDSGR--------LAADSLDDKNNIIAMVDSGSKGNPINIAQI 795
Query: 743 SLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTG 796
C+G Q+ P FR PH D ++ + VENS+L G
Sbjct: 796 IACVGQQNVEGKRIPTGFRDRTLPH---------FTKDDFGPESRGF-----VENSYLAG 841
Query: 797 LNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF 854
L P E F H++ R+ G + RRL+ M + YDG+VRN +++VQF
Sbjct: 842 LTPQEFFFHAMGGREGIIDTACKTAETGYIQRRLIKSMESIKVRYDGSVRNEM-DEVVQF 900
Query: 855 SYNIEGTST 863
Y +G +
Sbjct: 901 LYGEDGMTA 909
Score = 48.5 bits (114), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+++PRLG +P C +CG K R C GHFG ++ + H FL K L +C C
Sbjct: 43 LSDPRLGSVDPRTPCETCGMKMRD-CPGHFGHLELAKPMYHGGFLKTTLKALRCVCYYCS 101
Query: 104 TI 105
+
Sbjct: 102 KL 103
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
M+ +D TR+ ++I GI+A + L L IS G + H+ ++ +T+
Sbjct: 1376 MEAVDSTRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYVNYRHMSVLCDTMCQK 1435
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + + G+ + P +++ F + AA D+++G + + G++
Sbjct: 1436 GHLMSITRHGINRVER-----GPLMRSSFEEMVEMLMDAACYAETDHMRGVSENIMLGQL 1490
Query: 1249 PSVGTG 1254
+GT
Sbjct: 1491 APIGTA 1496
>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
Length = 1406
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 230/971 (23%), Positives = 391/971 (40%), Gaps = 164/971 (16%)
Query: 4 EFCEEGLE--VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSC 61
+FC G + V ++ + + T TE++ + E GA+ R+G + C++C
Sbjct: 17 QFCLSGPKEFVKDAVVEVSTRDLYTMTERKPV---EHGALDR----RMGTTDRNAVCATC 69
Query: 62 GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI-----------RKERQ 110
G + C GHFG ++ + + + +L +IC C T+ ++ R+
Sbjct: 70 G-EGVADCIGHFGHVRLALPVFNIGYFKTTLTILQNICKDCATVLVSQREKQNFLKELRK 128
Query: 111 KGAGSSRKEQ-----------PRVCKYCVRNPAQ---------WYPRMRFKLSSKDLSGK 150
G + R+ Q RVC YC + + R RF ++ G
Sbjct: 129 PGIDNLRRTQICKRLNDACKKVRVCPYCNKTQGVVKKAGPLKIIHERFRFNRKMQEEGG- 187
Query: 151 TAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYL---LKDVD 207
E + + K +PD + + + + P R + KQ++ + L +D
Sbjct: 188 -----EFRQSFDQALKAMPD-----LRPHLHKAHDDLNPLRVLNLFKQITPMDCELLGMD 237
Query: 208 PSI-REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEK----KLFFDNWTRHLKKMVD 262
P R E +L + P P R T + E KL WT L +
Sbjct: 238 PEKGRPENLL------WQYMPAPPVTIRPTVAQEGATTEDDITIKLTEIVWTSSLIRAAL 291
Query: 263 YRGRDIELSHLVQDCLKIS-KLHLD-------------KSSRKDSAEVRQKKNIDISNSS 308
+G I + L++S L+++ K +R ++ K+ N S
Sbjct: 292 NKGTPINSLMEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRLKGKQGRFRGNLS 351
Query: 309 GLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVC 368
G KR D R V++ DPN+++ ++ +P ++A+ L E++ N + L
Sbjct: 352 G----------KRVDFSGRTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTR 401
Query: 369 ISFRL-LEKGELYVC-RKGGLVRIRRI-------DALELGDIIYRPLTDGDIVLINRPPS 419
++ + G YV R G+ R R + L +GD + R L D D+VL NR PS
Sbjct: 402 VTNGPDVHPGANYVVDRDTGIKRFLRFGNRKRIAEELHVGDTVERHLQDNDVVLFNRQPS 461
Query: 420 IHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALD 479
+H S++A VKV P ++ N C P++ DFDGD ++ ++PQ AR E EL+ +
Sbjct: 462 LHKLSIMAHLVKVRPWRTL-RFNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMGIK 520
Query: 480 KQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---I 536
L+ ++G +++ QD +TA++LL L L F + DI +
Sbjct: 521 NNLVTPRNGEPIIAATQDFITASYLLSLKDCFLDRKTFCNLCCFMVDASVHIDIPPPAIL 580
Query: 537 SKDSVWSGKQLFSMLLPPD----FEYTFPSKDVYISGGK--------------------L 572
+W+GKQLF +L+ P+ + I+ GK L
Sbjct: 581 KPRCLWTGKQLFGVLMRPNHLSPVMVNLAANTRSIAKGKCSPPEMCPNDGYLLIQNSELL 640
Query: 573 ISAEGSSWLRDYEGNLFQYLIKRYRDKV--LDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
S + D + N Y+I R + + ++ +L RG ++ ++D+
Sbjct: 641 AGVVDKSIVGDGKKNSLFYVILRDYGPIEAAATMNRLAKLCARYLGNRGFSIGINDVQPG 700
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ 690
K + E Y + + D M + AK + + + + E +
Sbjct: 701 QRLYHTKEALVEKAYSVSD------------DLIMQY---AKGTLECQPGMNQEATLESK 745
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
S+ LS+ D + ++ GS+ N+ L M GSKG+ + + Q C+G Q
Sbjct: 746 ISSTLSKVRDDVGETCMKEL-------GSR-NAPLIMATCGSKGSKINVSQMVACVGQQI 797
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
R P + R AK + V NSF TGL P E H+++ R
Sbjct: 798 ISGK---RVPDGFQDRSLPHFRKNSKHPLAKGF-----VSNSFYTGLTPTEFLFHAISGR 849
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G ++RRLM + DL +AYDGTVR++ + IVQF+Y +G PT
Sbjct: 850 EGLVDTAVKTAETGYMSRRLMKSLEDLTSAYDGTVRSS-NSSIVQFTYGDDGLD-PTYLE 907
Query: 869 GDQPVGSLSAC 879
GD + C
Sbjct: 908 GDGTPVAFERC 918
Score = 44.7 bits (104), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
I +++ +++ GI+A Q + ++S + + G + P H++++ + ++ GE
Sbjct: 1256 IVGSKTFTNHVMEMNAVLGIEAARQSIIYEIDSTMRNHGLTVDPRHIMLLGDVMTCKGEV 1315
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ G+A + K S +S A F AA A D+++G + + GK+ +
Sbjct: 1316 LGITRFGVA-KMKDSVLS----LASFEKTTDHLFDAAARFAKDSIEGISECIVLGKLAPI 1370
Query: 1252 GTGGHFDIIYSGE 1264
GT F +I + E
Sbjct: 1371 GT-NVFQLIRTTE 1382
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 158/574 (27%), Positives = 261/574 (45%), Gaps = 71/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N E+L + E
Sbjct: 355 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIEKLHQLVENGPNEH 414
Query: 376 KGELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G L RR A LE G + R L GD ++ NR PS+H S++
Sbjct: 415 PGAQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHR 474
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++ Q
Sbjct: 475 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSPQKNG 533
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
L+ + QDSL A+ + V L+ Q+ ++ P+ P I+K W+GKQ
Sbjct: 534 PLMGIVQDSLAGAYKMCRRDVFLTKEQIMNCMLWVPNWDGVIPQPAIYK--PRPRWTGKQ 591
Query: 547 LFSMLLP--------PDFEYTFPSKD--VYISGGKLISA--EGSSWLRDYEGNLFQYLIK 594
L SM++P D + P KD + I G+L+ S G + +
Sbjct: 592 LISMVIPKEVTIFNGTDSGESAPLKDEGLLIQAGQLMYGLLTKKSVGASAGGIVHISYNE 651
Query: 595 RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ + FL Q+V+ WL G ++ + D + + ++ Q
Sbjct: 652 LGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTIPDAVTIAK-------------VQAHI 698
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
+ ++ V + + + +A + E+ + ++E + S AL+QA A +++
Sbjct: 699 DDEKAEV-ARLTAMATANELEALPGMN-VRATFENKVSMALNQARDKAGTTTQKSLKD-- 754
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSCAAW 768
N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 755 ------SNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH------- 801
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + A+ + VENS+L GL P E F H++ R+ G + R
Sbjct: 802 --FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQR 854
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + DL YDGTVRN+ G+ IVQF Y +G
Sbjct: 855 RLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDG 887
>gi|397135816|gb|AFO11403.1| RNA polymerase I, partial [Candida boidinii]
Length = 870
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 153/568 (26%), Positives = 265/568 (46%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEIVTPYNIQKLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNICYWIPNWDGVVPQPAILKPKPLWSG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ SM +P D P S + I+G + + + G L ++
Sbjct: 388 KQMLSMCIPKGIFLQRLDGSLLCPKDSGMLIINGEIMFGVVNKATVGATAGGLIHTTMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
V ++ Q+V+ WL G ++ + D + + K + + I A
Sbjct: 448 KGPYVCAGMFGNIQKVVNFWLLHNGFSIGIGDAI--ADGATMKTITETI------AVAKE 499
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
QQ++ D+H N L+ + + R S+E++ S L++A A K +++
Sbjct: 500 KVQQVITDAHKN-LLEPEPGMTVRE------SFEQKVSKILNEARDAAGKSAEASLKD-- 550
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M AGSKG+ + + Q S C+G Q + RF S +
Sbjct: 551 ------SNNVKQMVTAGSKGSYINISQMSACVG-QQIVEGKRIRFG--FSDRSLPHFTKD 601
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 602 DYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 656
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YD ++RN+ G+ I+QF Y +G
Sbjct: 657 EDIMVHYDSSIRNSVGD-IIQFLYGEDG 683
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 156/577 (27%), Positives = 256/577 (44%), Gaps = 77/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N +L+ + E
Sbjct: 354 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEH 413
Query: 376 KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G L RR L+L G + R L DGD ++ NR PS+H S++
Sbjct: 414 PGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 474 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNG 532
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
L+ + QD+L A+ L V L+ ++ + ++ P P I K W+GKQ
Sbjct: 533 PLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILK--PRPRWTGKQ 590
Query: 547 LFSMLLPP----------DFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY 596
+ SM++P D E K + I G++I + + +L Y
Sbjct: 591 IISMVVPKIINLKNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHLC--Y 648
Query: 597 RD----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMDEIFYGLREAQ 651
+ +DFL Q V+ WL G ++ + D + + ++ + +D+ +++
Sbjct: 649 NELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQLT 708
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
D QL MN ++E + S AL+ A A ++
Sbjct: 709 DMATNNQLEPLPGMNI----------------RETFENKVSKALNTARDKAGTSTESSLK 752
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSC 765
++ N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 753 DI--------NNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH---- 800
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 801 -----FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGY 850
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D YDGTVRN+ G+ I+QF Y +G
Sbjct: 851 IQRRLVKALEDSAAQYDGTVRNSLGD-IIQFVYGEDG 886
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +CG ++ C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSVDRQFKCKTCG-ENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCS 113
Query: 104 TIRKER--QKGAGSSRKEQPRV 123
+ +R ++ A + R P+V
Sbjct: 114 KVLADRNDKEFAAAMRIRDPKV 135
>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
Length = 871
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/602 (26%), Positives = 270/602 (44%), Gaps = 77/602 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL + A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QS + + + QD+L + + DS + M L + P +
Sbjct: 324 IVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIEYDQMMNILYWISDWDGVIPQPAILKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ SM +P KD + ++G L + G L
Sbjct: 384 LWSGKQMLSMTIPKGIHLQRFDEGTTLLSPKDNGMLIVNGEILFGVVDKKTVGATNGGLI 443
Query: 590 QYLIK-RYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ + + D Q+V+ WL G ++ + D + + M EI +
Sbjct: 444 HTVMREKGAAQCADLFGKIQKVVNFWLLHNGFSIGIGDTIADAGT------MKEITEAIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
A++ + ++ +++ N L +AK + R S+E L++A A +
Sbjct: 498 IAKEKVD--EVTLEAQQNKL-TAKHGMTLRE------SFEDNVIRYLNEARDKAGRSAEV 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
+++ L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 549 NLKGL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E + H++ R+
Sbjct: 600 --------FAKDDYSPESKGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G G + Q + ++
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGEDGLD--AGHVEKQTIDTIPGED 703
Query: 881 IS 882
I+
Sbjct: 704 IA 705
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 149/586 (25%), Positives = 267/586 (45%), Gaps = 82/586 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L +
Sbjct: 352 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNG 411
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L +R +L G + R + DGD++L NR PS+H S+
Sbjct: 412 PNEHPGARYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESM 471
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL++L + +++
Sbjct: 472 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSP 530
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + + L+ Q+ + M+ P P I K W
Sbjct: 531 QRNGPLMGIVQDTLCGIYKICRRDIFLTKDQVMNMMMWVPDWDGVIPPPAILK--PRPRW 588
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLISAEGS-SWLRDYEG 586
+GKQ+ SM LP KD + I GG+L+ S + G
Sbjct: 589 TGKQMISMALPSGLNLLRVDKDNSALSEKFSPLNDGGLLIHGGQLMYGMFSKKTVGASGG 648
Query: 587 NLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ + Y + F AQ ++ WL G ++ + D + + R
Sbjct: 649 GVIHTIFNEYGPGTAVAFFNGAQSIVNYWLLHNGFSIGIGDTIPDALTIQR--------- 699
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQASVDA 702
++ ++ V++ ++A +E+T L G ++ ++E + S AL+ A +A
Sbjct: 700 ----IENCVRVRKKEVEA-----ITASATENTLEPLPGMNVRETFESKVSRALNNARDEA 750
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 751 GSETEKSLKDL--------NNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKY 802
Query: 760 ---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 803 RTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDT 848
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + ++ YDGTVRN+ G+ ++QF Y +G
Sbjct: 849 AVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGD-VIQFVYGEDG 893
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + C +C + +K C GHFG I+ + H FL+ I KLL ++C C
Sbjct: 55 LNDPRLGTIDRQWNCETC-EEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCG 113
Query: 104 TIRKE 108
I+ +
Sbjct: 114 KIKAD 118
>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
CM01]
Length = 1757
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 154/591 (26%), Positives = 260/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGD N+ L E+G+P +A L E + +N +L +
Sbjct: 350 LRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIAKLHQLVENG 409
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID +LE G + R L DGD ++ NR PS+H
Sbjct: 410 PNEHPGAKYVIRSDGT----RIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNRQPSLH 465
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKV+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL +
Sbjct: 466 KESMMGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCLVPNN 524
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QDSL + L + +Q + ++ P+ + P +
Sbjct: 525 IVSPQKNGPLMGIVQDSLAGCYKLCRRDTFIDKELVQNIMLWVPNWDGVIPQPAILKPRP 584
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM++P + +Y KL + + + + G L L+K+
Sbjct: 585 RWTGKQIISMVIPAEIS-------LYSKEDKLDNPKHDAGMLIQSGQLIYGLLKKKYVGA 637
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
D + FL Q+V+ WL G ++ + D + K +D+
Sbjct: 638 AAGGIIHLCYNELGPDGAMAFLNGVQQVVTYWLLNTGHSIGIGD------TIPDKETIDK 691
Query: 643 IFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQ 697
I Q +D H + L + + +L G ++ ++E + S AL+
Sbjct: 692 I--------------QAHIDEHKAEVARLTAQATANELEALPGMNVRATFESKVSLALNM 737
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAP 754
A A +++ N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 738 ARDQAGTSTQKSLKD--------SNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIP 789
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 790 FGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMAGRE 835
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ ++QF Y +G
Sbjct: 836 GLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-VIQFLYGEDG 885
Score = 43.5 bits (101), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C A+ C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRQFKCKTC-AQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 267/584 (45%), Gaps = 79/584 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+ GDPN+ L E+G P A L E + +N E L ++
Sbjct: 353 LRQNLMGKRVDFSARTVICGDPNLSLFEVGTPRSSAMILTYPEVVTPYNIEFLQKLVNNG 412
Query: 372 RLLEKGELYVCRKGGL---VRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLI 426
+ G Y+ R G +R+ R + L G + R L DGD++L NR PS+H S++
Sbjct: 413 PTIYPGARYIVRDNGERIDLRMARKTSSNLLYGWKVERHLLDGDVILFNRQPSLHKESMM 472
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
A V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL EL + +++ Q
Sbjct: 473 AHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVPQSEEARAELQELALVPLNIVSPQ 531
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWS 543
L+ + QDSL + + V L+ Q+ L ++ P P I K W+
Sbjct: 532 RNGPLMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPDWDGVIPQPAILK--PRPRWT 589
Query: 544 GKQLFSMLLP-------------PDFEYTFPSKD--VYISGGKLISAEGS-SWLRDYEGN 587
GKQ+ SM+LP P E P D + + GG+L+ S + G
Sbjct: 590 GKQIISMVLPSGLNLLRIDKDKAPLSEKFSPLADGGLLVHGGQLMYGMFSKKTVGASGGG 649
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + Y D + F AQ V+ WL G ++ + D + K ++ I
Sbjct: 650 IVHTIFNEYGPDAAVTFFDGAQRVVNYWLLHNGFSIGIGD------TIPDKKTIERIEAA 703
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFK 704
+R + +Q++ + N L L G ++ ++E + S AL+ A +A
Sbjct: 704 VRAGK--AEVEQIVQSATENTL---------EPLPGMNIRETFESKVSRALNNAREEAGS 752
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF-- 759
+++L N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 753 ETEKSLKDL--------NNAVQMARSGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRT 804
Query: 760 -PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
PH D + ++ + VENS+L GL P E + H++ R+
Sbjct: 805 LPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFYFHAMGGREGLIDTAV 850
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + R+L+ + +L YDGTVRN+ G+ I+QF Y +G
Sbjct: 851 KTAETGYIQRKLVKALEELMVKYDGTVRNSLGD-IIQFLYGEDG 893
Score = 47.8 bits (112), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG + C +C + +K C GHFG I+ + H FL+ KLL ++C C I
Sbjct: 57 DPRLGTLDRQYYCETC-EEGQKECPGHFGHIELATPVFHIGFLTKTKKLLETVCHNCGKI 115
Query: 106 RKE 108
+ +
Sbjct: 116 KAD 118
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 154/585 (26%), Positives = 256/585 (43%), Gaps = 94/585 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 354 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 413
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 414 PGAKYVIRSDGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QDSL A+ + L Q+ L ++ P+ + P + W+G
Sbjct: 529 QKNGPLMGIVQDSLAGAYKICRRDTFLDKNQVMNLMLWVPNWDGIIPQPAILKPRPRWTG 588
Query: 545 KQLFSMLLPPDFEYTFP---SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR---- 597
KQ+ SM++P + P + + G LI A G L L+K+
Sbjct: 589 KQIISMVIPKEISLNAPEDKADNPLNDTGLLIQA----------GELMYGLMKKKSIGSA 638
Query: 598 --------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ + FL Q+V WL G ++ + D +
Sbjct: 639 SGGVIHLCYNELGPEGAMAFLNGVQQVTAYWLLQEGHSIGIGDTIPDKQT---------- 688
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
+ + Q + Q+ V + + +A + E+ + ++E + S AL+QA A
Sbjct: 689 ---IEKVQAHIDTQKAEV-ARLTAQATANELEALPGMN-VRATFENKVSMALNQARDQAG 743
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF- 759
+++ N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 744 TTTQKSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 795
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 796 TLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTA 841
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 842 VKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGD-IIQFLYGEDG 885
Score = 41.6 bits (96), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRQFKCKTC-TQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
3 [Strongylocentrotus purpuratus]
Length = 1921
Score = 179 bits (453), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 157/594 (26%), Positives = 264/594 (44%), Gaps = 94/594 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +L +S
Sbjct: 350 IRGNLMGKRVDFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRG 409
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G R+D L+ G + R L D D+V+ NR P++H
Sbjct: 410 HNQYPGAKYIIRDNG----ERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPTLH 465
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+L S +N +P++ DFDGD ++ ++PQ++ R E++E++ + +
Sbjct: 466 KMSMMGHRVKIL-TWSTFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIMVSRN 524
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+I QS R ++ + QDSL A + V ++ + L +F P+ + P I K
Sbjct: 525 MITPQSNRPVMGIVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPNWDGKIPKPAILK--P 582
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISAEGSS 579
+W+GKQL ++++P PD E P K VYI G+LI+
Sbjct: 583 RPLWTGKQLLTLVIPDNVNVVRFHSTHPDGEDRGPYKWLSPGDTKVYIVNGELITGIVCK 642
Query: 580 WLRDYEGNLFQYLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
G ++I +R + +F Q ++ WL + G ++ + D + +
Sbjct: 643 KTVGASGGTLGHIIFMERGHEIAKEFYSVVQVLVNNWLLLEGHSIGIGDCIADAST---- 698
Query: 638 ILMDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
D+I +R+A QD +++ N ++ S R ++E Q + L+
Sbjct: 699 --YDDIQNTIRKAKQDVIE----VIEKAHNDELTPTPGNSLRQ------TFENQVNRLLN 746
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
+A A K S+ N+ M AGSKG+ + + Q C+G Q+
Sbjct: 747 EARDKT--------GGSAQKSLSEFNNFKTMVVAGSKGSKINISQVIACVGQQNVEGKRI 798
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVT 808
P FR PH + Y P + VENS+L GL P E F H++
Sbjct: 799 PFGFRHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEMFFHAMG 842
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGT RN+ +Q+VQ Y +G
Sbjct: 843 GREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRNS-NDQLVQLRYGEDG 895
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 35 VMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
+ME G + + +PR G + T+ C +C A ++ C GHFG ++ + H FL+
Sbjct: 44 IMEAGKPKLGGLMDPRQGAIDRTSRCQTC-ACNQTDCPGHFGHMELAKAVFHIGFLTKTI 102
Query: 93 KLLNSICPKCKTI 105
K+L +C C +
Sbjct: 103 KVLRCVCFFCSKL 115
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 179 bits (453), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 156/577 (27%), Positives = 256/577 (44%), Gaps = 77/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N +L+ + E
Sbjct: 354 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEH 413
Query: 376 KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G L RR L+L G + R L DGD ++ NR PS+H S++
Sbjct: 414 PGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 474 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNG 532
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
L+ + QD+L A+ L V L+ ++ + ++ P P I K W+GKQ
Sbjct: 533 PLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILK--PRPRWTGKQ 590
Query: 547 LFSMLLPP----------DFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY 596
+ SM++P D E K + I G++I + + +L Y
Sbjct: 591 IISMVVPKIINLKNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHLC--Y 648
Query: 597 RD----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMDEIFYGLREAQ 651
+ +DFL Q V+ WL G ++ + D + + ++ + +D+ +++
Sbjct: 649 NELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQLT 708
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
D QL MN ++E + S AL+ A A ++
Sbjct: 709 DMATNNQLEPLPGMNI----------------RETFENKVSKALNTARDKAGTTTESSLK 752
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSC 765
++ N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 753 DI--------NNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH---- 800
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 801 -----FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGY 850
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D YDGTVRN+ G+ I+QF Y +G
Sbjct: 851 IQRRLVKALEDSAAQYDGTVRNSLGD-IIQFVYGEDG 886
Score = 48.9 bits (115), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +CG ++ C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSVDRQFKCKTCG-ENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCS 113
Query: 104 TIRKER--QKGAGSSRKEQPRV 123
+ +R ++ A + R P+V
Sbjct: 114 KVLADRNDKEFAAAMRIRDPKV 135
>gi|397135886|gb|AFO11438.1| RNA polymerase I, partial [Kurtzmaniella cleridarum]
Length = 872
Score = 179 bits (453), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 153/571 (26%), Positives = 263/571 (46%), Gaps = 63/571 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N +L+ + +
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIHKLTEYVRNGPNDH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQLPETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + Q+ + + P+ + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDNFIEFDQVMNMLYWIPNWDGVIPPPAIVKPKPLWTG 387
Query: 545 KQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
KQL SM +P D + KD + + G + + G L ++
Sbjct: 388 KQLLSMAIPKGIHIQRFDDGKDLLSPKDSGMLIVDGEIIFGVVDKKTVGATGGGLIHTVM 447
Query: 594 KRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ +V L++ Q+V+ WL G ++ + D S + M + + A+
Sbjct: 448 REKGPQVCAQLFSLIQKVVNYWLLHNGFSIGIGDTIADSET------MRTVTTTIDAAKK 501
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
Q++++D+ N L + E +L+ S+E S L+QA A + ++++
Sbjct: 502 KV--QEIILDAQRNKL----EPEPGMTLRE---SFEHNVSRVLNQARDTAGRSAEMNLKD 552
Query: 713 LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLR 772
L N++ M +GSKG+ + + Q S C+G Q R P + +
Sbjct: 553 L--------NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFT 601
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 602 KDDYSPELKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 656
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
+ D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 ALEDIMVHYDGTTRNSLGD-IIQFIYGEDGV 686
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 157/594 (26%), Positives = 265/594 (44%), Gaps = 94/594 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +L +S
Sbjct: 350 IRGNLMGKRVDFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRG 409
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G R+D L+ G + R L D D+V+ NR P++H
Sbjct: 410 HNQYPGAKYIIRDNG----ERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPTLH 465
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+L S+ +N +P++ DFDGD ++ ++PQ++ R E++E++ + +
Sbjct: 466 KMSMMGHRVKILTWSTF-RLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIMVSRN 524
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+I QS R ++ + QDSL A + V ++ + L +F P+ + P I K
Sbjct: 525 MITPQSNRPVMGIVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPNWDGKIPKPAILK--P 582
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISAEGSS 579
+W+GKQL ++++P PD E P K VYI G+LI+
Sbjct: 583 RPLWTGKQLLTLVIPDNVNVVRFHSTHPDGEDRGPYKWLSPGDTKVYIVNGELITGIVCK 642
Query: 580 WLRDYEGNLFQYLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
G ++I +R + +F Q ++ WL + G ++ + D + +
Sbjct: 643 KTVGASGGTLGHIIFMERGHEIAKEFYSVVQVLVNNWLLLEGHSIGIGDCIADAST---- 698
Query: 638 ILMDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
D+I +R+A QD +++ N ++ S R ++E Q + L+
Sbjct: 699 --YDDIQNTIRKAKQDVIE----VIEKAHNDELTPTPGNSLRQ------TFENQVNRLLN 746
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
+A A K S+ N+ M AGSKG+ + + Q C+G Q+
Sbjct: 747 EARDKT--------GGSAQKSLSEFNNFKTMVVAGSKGSKINISQVIACVGQQNVEGKRI 798
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVT 808
P FR PH + Y P + VENS+L GL P E F H++
Sbjct: 799 PFGFRHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEMFFHAMG 842
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ M + YDGT RN+ +Q+VQ Y +G
Sbjct: 843 GREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRNS-NDQLVQLRYGEDG 895
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 35 VMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
+ME G + + +PR G + T+ C +C A ++ C GHFG ++ + H FL+
Sbjct: 44 IMEAGKPKLGGLMDPRQGAIDRTSRCQTC-ACNQTDCPGHFGHMELAKAVFHIGFLTKTI 102
Query: 93 KLLNSICPKCKTI 105
K+L +C C +
Sbjct: 103 KVLRCVCFFCSKL 115
>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
mytilus]
Length = 1678
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 156/576 (27%), Positives = 261/576 (45%), Gaps = 70/576 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+T DPN++L ++G+P Q+A L + E + + N + + +L+E+
Sbjct: 241 LMGKRVDFSARTVITPDPNLQLDQLGVPQQIALNLTVPETVTNENIDEMR-----KLIER 295
Query: 377 G------ELYVCRKG------GLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G Y+ R +R R + G + R L D D V+ NR PS+H S
Sbjct: 296 GPNIWPGAKYIIRHDDRQIDLSQMRNRSEATIHPGFKVERHLRDNDYVIFNRQPSLHKMS 355
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
L+ VKVLP S+ +N +P++ DFDGD ++ ++PQ+ E+ E++A+ Q+++
Sbjct: 356 LMGHRVKVLPFSTF-RLNLSVTTPYNADFDGDEMNMHVPQSYETMAEIKEIMAVPNQIVS 414
Query: 485 QQSGRNLLSLGQDSLTAAHLL-MEDSVLLSHLQMQQLQ--MFCPHRFLSPDIFKISKDSV 541
QS + ++ + QDSL L ++D+ + L MQ L + +F P I K +
Sbjct: 415 PQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWAKYEDDKFPMPTILK--PRPL 472
Query: 542 WSGKQLFSMLLPP-DFEYTFPSK----------DVYISGGKLISAEGSSWLRDYEGNLFQ 590
W+GKQ+FS+++P + + K ++ I G+LI +
Sbjct: 473 WTGKQIFSLIIPDINLQKVGEKKGLIWDSAGDLNILIRKGELICGNLTKGTIGSSSGGMI 532
Query: 591 YLIKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
++I + + DFL Q ++ WL G TV + D+ I EI +R
Sbjct: 533 HIIWKEKGPYCCRDFLSNTQLIINNWLHQNGFTVGVQDI----------IAKKEIVQKIR 582
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
++ F++ + + S+ +S+ S+E + L++A D
Sbjct: 583 DS--MTKFKRDVTKIQQKAQLGKLKSQPGKSMME---SFEASVNQCLNKARDDCGNMALA 637
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
D+ S N L AM AGSKG+ L + Q C+G Q+ R P +
Sbjct: 638 DL--------SSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVEGK---RIPFGFYKRSL 686
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D +K + VEN +L GL P E F H++ R+ G + R
Sbjct: 687 PHFSKDDFGPESKGF-----VENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 741
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
RL+ + D+ YDGTVR + QI+QF Y +G +
Sbjct: 742 RLIKALEDVMVKYDGTVRTS-KEQIIQFLYGEDGMA 776
>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
Length = 1801
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 183/662 (27%), Positives = 291/662 (43%), Gaps = 106/662 (16%)
Query: 271 SHLVQDCLKISKLHL-----DKSSRKDSAEVRQKKNIDISNS---SGLRWIKDVVLGKRN 322
+H++Q+ ++ + H+ ++ A R KK I S ++ ++GKR
Sbjct: 331 AHIIQEMCQLLQFHITTLFDNEIPGMPVASTRSKKPIKAIRSRLKGKEGRLRGNLMGKRV 390
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYV 381
D R V+TGDPNI + IG+P +A L E + N+ L + E G Y+
Sbjct: 391 DFSARTVITGDPNIPIDTIGVPKSIAMTLTFPETVTPLNYAILKKKVEKGPHEWPGAKYI 450
Query: 382 CRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
R G L +RR L+L G + R + DGD +L NR PS+H S++ K+LP
Sbjct: 451 VRDDGTRYDLRHVRRPSELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHKAKILPY 510
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N SP++ DFDGD ++ ++ Q AR E+ L+ KQ+++ Q R ++ +
Sbjct: 511 STF-RLNLSVTSPYNADFDGDEMNLHLAQTHEARSEIKHLMLSPKQIVSPQGNRPVMGIV 569
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLL 552
QDSL LS + L + P+ R P IF + +W+GKQ+ S+LL
Sbjct: 570 QDSLLGVSKFTMKDTFLSRDVLMNLLTWIPYWDGRVPLPCIFYPQR--LWTGKQVISILL 627
Query: 553 PPDFEYTFPSKDVYI-----SGGKLISAEGS----------SWLRDYE------------ 585
F+ + I SG ++ +GS +R E
Sbjct: 628 --SFDQAHLQNQININLRRTSGFSSVTGQGSVRALEMIDSEVTIRQNEHLTGTICKRTVG 685
Query: 586 ---GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
G+L L ++ DF+ Q+V+ WL G TVS SD+ A + +D
Sbjct: 686 SSSGSLIHVLWHEAGPERTKDFITTLQKVVNNWLIETGFTVSCSDIITADTT------LD 739
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
+ L A+D QQL+ + L + + +SL S+E + + L++A
Sbjct: 740 MVAESLGAAKD--RVQQLVSLAQRGKL----ECQPGKSL---FESFEARVNKELNEAREQ 790
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF- 757
+ + V + + N++LAM AGSKG+ + + Q C+G Q+ P F
Sbjct: 791 SGRIVAESL--------DEQNNILAMVNAGSKGSSINISQIIACVGQQNVEGKRIPFGFC 842
Query: 758 --RFPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSS 813
PH + Y P + V NS+L+GL P E F H++ R+
Sbjct: 843 DRSLPHFIK----------------HDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGI 886
Query: 814 FSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRL+ M D+ YDGTVRN+ G I+QF Y +G + E DQ
Sbjct: 887 IDTACKTSETGYIQRRLIKAMEDIMVHYDGTVRNS-GGDILQFLYGEDGMNAEFVE--DQ 943
Query: 872 PV 873
P+
Sbjct: 944 PL 945
Score = 40.8 bits (94), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
R+G + CS+C D K C GHFG I + H F++ + K+L +C C +
Sbjct: 60 RMGTTDYRINCSTCNM-DVKHCPGHFGHITLAKPMYHYGFITTVMKVLRCVCYNCGRLLI 118
Query: 108 ERQKGAGSSRKEQP------RVCKYCV 128
+ + K +P R+ + CV
Sbjct: 119 SPEDPRAMALKNRPGAQKLHRMAELCV 145
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 165/582 (28%), Positives = 265/582 (45%), Gaps = 75/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G P +A L E + +N R+ I
Sbjct: 342 IRGNLMGKRVDFSARTVITADPNLGIDQVGCPRSIALNLTYPEIVTKFNMPRMYELIRNG 401
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R G L I++ L L G + R + DGD VL NR PS+H S+
Sbjct: 402 PNEHPGARYIIRDDGQRLDLRYIKKASDLHLEPGYRVERHIQDGDYVLFNRQPSLHKMSI 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N +P++ DFDGD ++ ++ Q R E+ E+ + +Q+I+
Sbjct: 462 MGHRVKVMPYSTF-RLNLSVTTPYNADFDGDEMNMHVAQTFETRAEVQEICLVPRQIISP 520
Query: 486 QSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMF--CPHRFLSPDIFKISKDSVW 542
QS R ++ + QD+L A+ + + D+ + + M L R P I K +W
Sbjct: 521 QSNRPVMGIVQDTLMASQKMTIRDTFIEKDVVMNILMHLDSFDGRLPIPAILK--PRPLW 578
Query: 543 SGKQLFSMLLP-----------PDFEYTFPS---KDVYISGGKLISA-EGSSWLRDYEGN 587
+GKQLF+M LP PD E + S V I G+L++ L G+
Sbjct: 579 TGKQLFTMFLPNVNLIRFCSQHPDNEVSDISPGDTKVIIEQGELLAGIVCKRTLGTSSGS 638
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + D F Q+V+ WL G ++ + D + + + M+ I
Sbjct: 639 LIHVIWNEHGHDIARVFFSMTQKVINNWLINVGFSIGIGD------TIADEATMETINQH 692
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ A+ QQL++D N L + + R+L S+E + + L+ A +A
Sbjct: 693 IGTAK--TRVQQLILDCQQNRL----ECQPGRTLLE---SFENRVNKELNTARDNAGAS- 742
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FP 760
A K N++ AM +GSKG+ + + Q C+G Q+ P FR P
Sbjct: 743 -------AQKSLKPSNNVKAMVTSGSKGSFINISQMIACVGQQNVEGKRIPFGFRDRTLP 795
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D ++ + VENS+L GL P E F H++ R+
Sbjct: 796 H---------FHKNDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 841
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YD T+RN+ G+ I+QF Y +G
Sbjct: 842 SETGYIQRRLIKAMEDVMVQYDSTLRNSIGD-IIQFVYGEDG 882
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 20 ISLGISTDTEKEKLSVMEI----------GAVSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
+ GI E ++SV +I + + +PR+G + +C +C A C
Sbjct: 20 VQFGILGPDEIRRMSVAKIEYPECFENGRPKLGGLMDPRMGSIDRQFKCQTC-AGSMSEC 78
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
GHFG ++ +LH F++ I K+L +C C +
Sbjct: 79 PGHFGHLELAKPVLHIGFMTTILKILRCVCFHCSKL 114
>gi|340503712|gb|EGR30247.1| hypothetical protein IMG5_137010 [Ichthyophthirius multifiliis]
Length = 1464
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 224/912 (24%), Positives = 381/912 (41%), Gaps = 145/912 (15%)
Query: 48 RLGLPNPTN--ECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+GL N +C +C D C GHFG+IK I H F ++I +L IC C I
Sbjct: 43 RMGLSMRENNQKCQTCQM-DMIDCPGHFGYIKLVLPIFHVGFFTEIINILQCICKNCGEI 101
Query: 106 R---------KERQKGAGSSRKEQPRVCKYC-VRNPAQWYPRMRFKLSSKDLSGKTAIIV 155
K+R + A + + Q R+ Y +R + R ++ +G +
Sbjct: 102 LLNIDEKLACKKRMQRAINEKNYQLRMLIYTKMRKECKKGANSRCRICDYK-NGNLKKMP 160
Query: 156 EIDEKLSKKN-KKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDP------ 208
++ +S +N K+ D+ + Q+EN RK+L KQ+ +++ +P
Sbjct: 161 KMPTTISFQNHTKMESDFREIKKSENLQQENL----RKILDQKQLKDMIQLYNPLQTFNL 216
Query: 209 --SIREE----FILSKDAPF---LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKK 259
I + F + ++ P L V P+ R P E + D+ T ++
Sbjct: 217 FKKIAQSDVILFNIDQNHPIDLILTHIIVPPSCIR----PTIKEGESNVRHDDLTVKIR- 271
Query: 260 MVDYRGRDIELSHLVQDCLKISKLH------------------------LDKS-SRKDSA 294
D+ R+ ++ ++ D SK++ +DK +KD
Sbjct: 272 --DFLERNKRIAQMINDGEDPSKINQEWFLLQCSHAHYLNAETPNLPFKMDKDFGKKDIR 329
Query: 295 EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
+ Q+ + G + + GKR++ R V++ DPNI + + IP +A+ L
Sbjct: 330 ALAQR----LKGKKG--RFRGNLSGKRSNFTGRTVISPDPNIPIDNVVIPEYMAKILTFP 383
Query: 355 ERLNSWNWERLS-VCISFRLLEKGELYVCRKGGL--------VRIRRIDALELGDIIYRP 405
E + S+N ++L + I+ G Y+ K R ++ D L++GD++ R
Sbjct: 384 ETVASYNIDKLKKLVINGPDKYPGAHYIISKDTQDKFNLSIDNRRKKADELKIGDVVERH 443
Query: 406 LTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQA 465
+ +G+IVL NR PS+H S++A + +++ N CC+PF+ DFDGD ++ ++PQ
Sbjct: 444 IQNGEIVLFNRQPSLHRISIMAFKANIQKWNTL-RFNECCCAPFNADFDGDEMNIHVPQT 502
Query: 466 IGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP 525
I AR E L+ + + LI+ ++G +++L QD LTA++L+ + QL +
Sbjct: 503 IEARAEAQYLLDVKQNLISPKNGETIIALVQDFLTASYLITHKDMFFDRAAFSQLCTYFS 562
Query: 526 ---HRFLSPDIFKISKDSVWSGKQLFSMLLPP---------------------DFEYTFP 561
+ P I +W+GKQ +L P D E P
Sbjct: 563 DGNEQIQLPPPAVILPVEMWTGKQAIDAMLIPNRKNKIIVNLTLKEKCYNTKKDREIMCP 622
Query: 562 SKDVYI--SGGKLISAE-GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQ--EVLCEWLS 616
KD Y+ +L+ G + L N Y + R + + + ++ WLS
Sbjct: 623 -KDGYVVFQNSELLCGNLGKTTLGSGNKNGLFYRLSRDNSQQIAAAVMTRFAKLSARWLS 681
Query: 617 VRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSES 676
GMT+ +SD+ + L ++ EA C ++ + +N + +
Sbjct: 682 NYGMTIGISDVTPSPQ------LNEQNEKQKDEAIQKCTYESKKFEREINAQQKLHTTSN 735
Query: 677 TRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNL 736
T + + +KQ A +S+ V DI + K N L M GSKG+
Sbjct: 736 TSEIAADK---KKQVEAFISK----TLNQVREDIGSNCNKELPPTNGPLIMATCGSKGSA 788
Query: 737 LKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYI---PSAV--VEN 791
L Q C+G Q R P+ + AK I P A+ V N
Sbjct: 789 TNLSQMIGCVGQQIIGGK---RVPNGFTGRTLPHF--------AKDEIFPHPEAMGFVRN 837
Query: 792 SFLTGLNPLECFIHSVTSRDS---SFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYG 848
SF TGL+ E F H++ R+S + AD G ++RRL+ + DL YD TVR
Sbjct: 838 SFFTGLSAPEFFFHTMAGRESLVDTAVKTADT-GYMSRRLVKMLEDLSINYDLTVRTCDK 896
Query: 849 NQIVQFSYNIEG 860
+++QF Y +G
Sbjct: 897 KELIQFRYGGDG 908
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 146/402 (36%), Gaps = 60/402 (14%)
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLG 930
+ VG++ A +ISE A + + + + V A + + KL
Sbjct: 1090 EAVGAIGATSISEPATQMTLKSFHFAGIASMNITQGVPRMKEIIDAAKNISTPVIDVKLL 1149
Query: 931 KRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRK-----E 985
EY ++ +E L +I YSP+ CH H++ E
Sbjct: 1150 PEYQTDEYNFRSIRLQIEKTYLGEICEFYKEAYSPKD----------CHLHIQLNQQQLE 1199
Query: 986 IMKRTGLK--EHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTV 1043
+ GL+ +II + K + E + V KE F +
Sbjct: 1200 KYRTLGLQIPTENIIKGILETAKDIKMEQIVEV----------------KEQGSHFSTAL 1243
Query: 1044 MIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHD-DSFGEL 1102
I IQ W L VV G + +K+V+I KDK+K + + D F E
Sbjct: 1244 KIYPTNDLKKNVFFKIQNW-KKILPTAVVSGMKNVKRVNI-SKDKKKNEQHYKFDLFVEG 1301
Query: 1103 YLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNL 1162
+L LM ++ +D++ + +I GI+A + + +
Sbjct: 1302 ------------NALKQILM------LEKVDFSSTSTVDIYEVFEVLGIEAARKTIINEI 1343
Query: 1163 ESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGA 1222
I N+ HL++VA+ L++ G G +G+ + S + A F
Sbjct: 1344 TKTIKSHSLNVDTRHLVLVADVLTSKGRLYGSTRQGINFMK-----DSTLMLASFEKTTE 1398
Query: 1223 SFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGE 1264
AA G D L+G + + G+ +GTG F+++Y +
Sbjct: 1399 ILYNAALQGRKDLLEGVSERIIIGQNIPMGTGT-FNVLYGNQ 1439
>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
Length = 865
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 154/568 (27%), Positives = 255/568 (44%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPLSIARTLSYPEIVTPFNIHRLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + D+ + M L + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDNFIELDQVMNMLYWIPTWDGVIPPPAVMKPKPLWTG 387
Query: 545 KQLFSMLLPPDFEYT------FPSKD---VYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQL S+ +P KD + + G + + G L + +
Sbjct: 388 KQLLSIAIPKGIHLQRLESSLLSPKDNGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVFRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V L++ Q+V+ WL G ++ + D S + K++ I + QD
Sbjct: 448 KSPQVCAQLFSNIQKVVNFWLLHNGFSIGIGDTIADSETM--KVVTTTIEEAKSKVQDII 505
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
MN + E+ +L+ ++E S L+QA A + +++L
Sbjct: 506 ----------MNAQRDKLEPEAGMTLRE---TFENNVSRVLNQARDTAGRSAEMSLKDL- 551
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 552 -------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFTKD 601
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 602 DYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 656
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGT RN+ G+ IVQF Y +G
Sbjct: 657 EDIMVHYDGTTRNSLGD-IVQFLYGEDG 683
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 157/590 (26%), Positives = 259/590 (43%), Gaps = 98/590 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + E+G+P +A L E + +N ER+ + E
Sbjct: 275 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEH 334
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L +GD+V+ NR PS+H S+
Sbjct: 335 PGAKYVIRDTG----ERIDLRYHKRAGDIPLQYGYKVERHLNNGDVVIFNRQPSLHKMSM 390
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ + E+ E+ + KQ+I+
Sbjct: 391 MGHKVRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETKAEIKEICMVPKQIISP 449
Query: 486 QSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + D + L M L + P + +W+G
Sbjct: 450 QSNKPVMGIVQDTLCGIRKFTKRDCFVDKALVMNILMWVADWDGVIPTPAILKPQPLWTG 509
Query: 545 KQLFSMLLP------------PDFEYTFPS---KDVYISGGKLIS---------AEGSSW 580
KQL +M++P PD E + S V + G+L+S A W
Sbjct: 510 KQLVTMIVPKNINCITYHSAHPDDEKSDISPGDTKVVVENGELLSGIVCKKTVGASNGGW 569
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + K+ F AQ V+ WL G ++ + D +A + I
Sbjct: 570 VHVAMNEHGPEVAKK-------FFSGAQAVVNYWLLQHGFSIGIGDT-IADGQTTEHIT- 620
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+T N + V + L + +D+ ++E + + L++A
Sbjct: 621 -----------ETINSAKQRVSEII--LSAQQDTLECAPGMTIRETFENKVNRELNRARD 667
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSF 757
+ + A K ++N++ M +GSKG+ + + Q S C+G Q+ P F
Sbjct: 668 HSGRS--------AEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPFGF 719
Query: 758 RF---PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDS 812
+F PH Y P + VENS+L GL P E + H++ R+
Sbjct: 720 KFRTLPH----------------FTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREG 763
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ GN I+QF Y +G
Sbjct: 764 LIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGN-IIQFCYGEDG 812
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 178 bits (452), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 160/616 (25%), Positives = 272/616 (44%), Gaps = 92/616 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+++ ++G+P +A+ L E + +N +++ +
Sbjct: 323 IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRG 382
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGD+++ NR P++H
Sbjct: 383 NSQYPGAKYIIRDNG----ERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNRQPTLH 438
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N SP++ DFDGD ++ +IPQ++ R E+ + +Q
Sbjct: 439 KMSMMGHRVKVLPWSTF-RMNLSVTSPYNADFDGDEMNMHIPQSMETRAEVENIHITTRQ 497
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISK 538
+I Q+ + ++ + QD+LTA + + V L QM + M P + P I K
Sbjct: 498 IITPQANKPVMGIVQDTLTAVRKMTKRDVFLEKEQMLNILMHLPIWDGKMPQPAILK--P 555
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQ+FS+++P PD E P K + K++ G
Sbjct: 556 KPLWTGKQVFSLIIPGNVNMIRTHSAHPDEEDDGPYKWISPGDTKVMVEHGDLVMGILCK 615
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L +V Y Q V+ WL + G ++ + D S +
Sbjct: 616 KTLGTSAGSLLHICFVELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGD------SIADP 669
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
EI +++A++ + +++ +H N + + R ++E Q + L+
Sbjct: 670 QTYLEIQKTIKKAKE--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILND 720
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
A A K ++ N+L AM +G+KG+ + + Q C+G Q+ P
Sbjct: 721 ARDKT--------GGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEGKRIP 772
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTS 809
FR PH + Y P + VENS+L GL P E F H++
Sbjct: 773 FGFRKRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGG 816
Query: 810 RDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
R+ G + RRL+ M + YDGT+RN+ G Q++Q Y +G + E
Sbjct: 817 REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVG-QLIQLRYGEDGLAGEHVE 875
Query: 868 IGDQPVGSLSACAISE 883
P LS A +
Sbjct: 876 FQSLPTVKLSNRAFEK 891
Score = 43.5 bits (101), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC---- 99
+ +PR G+ + + C +C A + C GHFG I + H FL K+L +C
Sbjct: 32 LMDPRQGVVDRLSRCQTC-AGNMTECPGHFGHIDLAKPVFHSGFLVKSIKILRCVCFYCS 90
Query: 100 -----PKCKTIRKERQKGAGSSRKEQPRVCKYC 127
P I+ QK G RK V C
Sbjct: 91 KLLVNPTTPRIKDILQKSKGQPRKRLAAVYDLC 123
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 153/584 (26%), Positives = 267/584 (45%), Gaps = 75/584 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A + E + +N ERL +
Sbjct: 268 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNMTYPETVTPYNIERLKELVENG 327
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R+ G +R+D LELG + R L DGD VL NR P
Sbjct: 328 PHPPPGKTGAKYIIREDG----QRVDLRYLRKSSDHHLELGYKVERHLIDGDFVLFNRQP 383
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ +K++P S+ +N SP++ DFDGD ++ ++PQ R E+ EL+ +
Sbjct: 384 SLHKMSIMGHRIKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQCFETRAEVLELMMV 442
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ QS R ++ + QD+L + + + + M+ + +P I K
Sbjct: 443 PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAIMK 502
Query: 536 ISKDSVWSGKQLFSMLLPPDFE--------------YTFPSKD-VYISGGKLISAE-GSS 579
+W+GKQ+F++++P + P V I G+L+S
Sbjct: 503 --PRPLWTGKQVFNLIIPKQINLIRYSAWHSESETGFITPGDTCVRIERGELLSGTLCKK 560
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
+ G+L + + D FL Q ++ WL ++ + D + +
Sbjct: 561 TMGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAST----- 615
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
M++I + +A++ ++L+ + L ++E R++ S+E + + L++A
Sbjct: 616 -MEKINETISKAKNEV--KELIKAAQEKQL----EAEPGRTMME---SFENRVNQVLNKA 665
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
DA + A + S+ N+L AM AGSKG+ + + Q + C+G Q+ R
Sbjct: 666 RDDA--------GSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---R 714
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P D ++ + VENS+L GL P E F H++ R+
Sbjct: 715 IPFGFIDRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAV 769
Query: 819 DL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 770 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 812
>gi|397135814|gb|AFO11402.1| RNA polymerase I, partial [Ambrosiozyma monospora]
Length = 870
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 160/596 (26%), Positives = 281/596 (47%), Gaps = 70/596 (11%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A+ L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLSYPEIVTPYNIQKLTELVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N +P++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MCHRVKVMPYSTF-RMNLSVTTPYNADFDGDEMNLHVPQSYETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L A + + + + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGARKMTLRDIFIEYDQVMNICFWIPNWDGVVPQPCIMKPKPLWSG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ S+ +P D P S + ++G + + + G L ++
Sbjct: 388 KQMMSLCIPKGIFLQRLDGPLICPKDSGMLVVNGEIMFGVVNKATIGASAGGLIHTTMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V L+ Q+V+ WL G ++ + D + + M I + A+D
Sbjct: 448 KGPQVCAQLFGNIQKVVNFWLLHNGFSIGIGD------AIADPDTMKNITETIATAKDKV 501
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q +++D+ N L A+ + R S+E++ S L++A D+ +
Sbjct: 502 --QGVIMDAQNNRL-EAEPGMTVRE------SFEQKVSNILNKAR---------DVAGKS 543
Query: 715 YKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLR 772
+ KD N++ M AGSKG+ + + Q S C+G Q ++F F +
Sbjct: 544 AETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADR----SLPHFT 599
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMF 830
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 600 KDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLK 654
Query: 831 FMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
+ D+ YDGT RN+ G+ I+QF Y +G PT ++ Q V ++ S+AA+
Sbjct: 655 ALEDIMVHYDGTTRNSLGD-IIQFLYGEDGLD-PT-QVEKQTVDTIPG---SDAAF 704
>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
Length = 871
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 163/596 (27%), Positives = 271/596 (45%), Gaps = 77/596 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R L D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYNKRAGDVVLQYGWKVERHLMDDDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL + A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNICAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L + V + + QM + P + P +
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGVRKMTLRDVFIEYDQMMNTLYWIPDWNGVIPQPAILKPKP 383
Query: 541 VWSGKQLFSMLLPP-------DFEYTFPS-KD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQL S+ +P D T S KD + + G L + G L
Sbjct: 384 LWTGKQLLSVAIPDGIHLQRLDEGTTMASPKDNGMLIVDGEILFGVVDKKTVGATNGGLI 443
Query: 590 QYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ + D Q+V+ WL G ++ + D +A S M EI +
Sbjct: 444 HTVMREKGPRACADLFGKLQKVVNFWLLHNGFSIGIGDT-IADAST-----MKEITEAIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
A++ + ++ +++ N L +AK + R S+E L++A A +
Sbjct: 498 IAKEKVD--EVTLEAQQNKL-TAKHGMTLRE------SFEDNVIRYLNEARDKAGRSAEV 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
+++ L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 549 NLKGL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E + H++ R+
Sbjct: 600 --------FAKDDYSPESKGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSL 876
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G G + Q + +L
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSTGN-IIQFVYGEDGLD--AGHVEKQTIDTL 699
>gi|407917443|gb|EKG10751.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
Length = 1466
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 156/615 (25%), Positives = 266/615 (43%), Gaps = 111/615 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISF-RLLEKG 377
GKR D R V+ DPN+ ++E+ +P +VA+ + E+++ +N E+L C+ + G
Sbjct: 368 GKRVDFSGRTVIGPDPNLSIEEVAVPERVAKNMTYPEKVSRYNLEKLRGCVRRGKFKHPG 427
Query: 378 ELYVCRKGGLVRIRRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
++ ++ G + + + L++GD++ R + DGDIVL NR PS+H S++
Sbjct: 428 ANFIVKQDGRRMVLEVLQKLGKLEQTAEQLQIGDVVERHIEDGDIVLFNRQPSLHKLSIL 487
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
+ KV P + +N C+P++ DFDGD ++ ++PQ AR E EL+ + L +
Sbjct: 488 SHKAKVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEAIELMGVKNNLATPK 546
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRF-----------------L 529
+G +++ QD +T A L + L + + C + F L
Sbjct: 547 NGTPIIAAIQDFITCAFLTTRKDLFLDR---KTFALMCSYMFNGDSVRDPETGKYHKIDL 603
Query: 530 SPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYIS---------GGKLISAEGSSW 580
P + + ++W+GKQ++++L+ P + + V ++ G K E +W
Sbjct: 604 PPPVI-LKPQALWTGKQVWNVLMRP-----YKASKVLVNLDAACKQYKGNKKDLNEDDAW 657
Query: 581 L--RDYE-------------GNLFQYLIKRYRDKVLDFLYAAQEVLCE----WLSVRGMT 621
L R+ E G RD D+ A L + WL+ RG +
Sbjct: 658 LVVRNSEVMCGVMDKSTVGDGKKDSVFYVMMRDFGPDYAVQAMNRLAKLSARWLTNRGFS 717
Query: 622 VSLSDLYLASHSCSRKI-LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSL 680
+ +SD+ S RK L+ + + ++ + N +L D+ +
Sbjct: 718 IGVSDVTPGSKLVERKTKLIQDAYIQAKKIVELYNTGKLERDAGCD-------------- 763
Query: 681 QGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLV 740
E L+ E + S L++ +A F ++ N NS L M K GSKG+ + +
Sbjct: 764 --EELTMENKISGVLNKVRAEAGDICFSELTNW--------NSPLIMAKCGSKGSNINVA 813
Query: 741 QHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPL 800
Q C+G Q R G AK + V NSF +GL P
Sbjct: 814 QMVACVGQQIIGGA---RVQDGFQDRTLPHFAKGGRLPDAKGF-----VANSFYSGLTPY 865
Query: 801 ECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY-- 856
E H+++ R+ G ++RRLM + DL YD TVRN+ +QIVQF Y
Sbjct: 866 EFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDDTVRNS-ASQIVQFRYGD 924
Query: 857 ------NIEGTSTPT 865
++EG + P
Sbjct: 925 DNLDPVDMEGKAKPV 939
Score = 50.1 bits (118), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI-- 105
R+G+ + + C +CG +D K+C GHFG +K H +L I ++L+ IC +C I
Sbjct: 66 RMGISSKSAACETCG-EDLKSCNGHFGHVKLALPAFHIGYLKMIIEVLHCICKECSNILL 124
Query: 106 -RKERQKGAGSSRK 118
RQ+ S R+
Sbjct: 125 DEASRQRYTKSLRR 138
>gi|342183998|emb|CCC93479.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma
congolense IL3000]
Length = 1537
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 164/598 (27%), Positives = 264/598 (44%), Gaps = 106/598 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG- 377
GKR D R V++ DPN+ + E+ +P VA L +R+ N E + RL+ G
Sbjct: 361 GKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKSNHELMR-----RLVRNGP 415
Query: 378 -------ELYVCRKGGLV-------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
+Y+ ++G R+R L +GDI+ R + +GD++L NR PS+H
Sbjct: 416 DVHPGAVTVYLAQEGSRKSLKNERDRLRLAARLAVGDIVERHVMNGDLILFNRQPSLHRV 475
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++A +VLP + N CC+P++ DFDGD ++ + Q AR E +L++ K +I
Sbjct: 476 SMMAHRARVLPFRTF-RFNECCCAPYNADFDGDEMNVHFVQTEEARAEALQLMSTAKNII 534
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF-----CPHRFLSPDIFKISK 538
+ ++G +++ QD L AA+L V L+M Q+ + R P I K ++
Sbjct: 535 STKNGEPIIACTQDFLAAAYLATGRDVFFDRLEMSQMVSYWLGPVTQFRLPIPAILKPTE 594
Query: 539 DSVWSGKQLFSMLLPP----DFEYTF--PSKDVYISGGKLISAEGSSWLRDYEGNLFQYL 592
+W+GKQLF ++L P D TF P+K G ++EG Y L
Sbjct: 595 --LWTGKQLFELILRPSPEVDILLTFEAPTKFYTKKGKHDCASEG------YVAFLDSCF 646
Query: 593 IKRYRDKVL------DFLYAAQEVLC-----------------EWLSVRGMTVSLSDLYL 629
I DK L D L+A L +L+ G ++ L D+
Sbjct: 647 ISGRLDKKLLGGGAKDGLFARLHTLAGGEYTARVMSRIAQFTTRYLTNYGFSLGLGDVAP 706
Query: 630 ASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE-HLSYE 688
+ RK + L + +TCN +L+ + ++ +SL+ +
Sbjct: 707 TAELNERKAAV------LNRSVETCN--RLIASAKTGRMIPLPGLTVRQSLEARLNTELS 758
Query: 689 KQR----SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
K R +AA+ S+D+ N+ L M ++GSKG+ L + Q
Sbjct: 759 KVRDECGTAAMQTLSIDS-------------------NTPLLMVQSGSKGSALNIAQMMA 799
Query: 745 CLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
C+G Q + S ++R + A+ + V NSF +GL+P E F
Sbjct: 800 CVGQQTVNGRRILDAFQDRSLPHFHRF---EEAPAARGF-----VANSFYSGLSPTEFFF 851
Query: 805 HSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
H++ R+ G + RRLM M +LC YDGTVRNA G+ +VQ + +G
Sbjct: 852 HTMAGREGLVDTAVKTAETGYIYRRLMKAMENLCVRYDGTVRNARGD-VVQLKFGEDG 908
Score = 45.8 bits (107), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVME----IGAVSE--VTNPRLGLPNP 54
+ +F E P I + + GI + ++ +LSV+ +G V E V + RLG+ +
Sbjct: 12 LPQQFVEPQPHAPVEI-SALHYGILSRSDIHRLSVLPCRRVVGDVKEYGVNDTRLGVCDR 70
Query: 55 TNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+ C +CG + + C GH G I + H F S + ++ +IC +C +
Sbjct: 71 ISLCETCGLNNVE-CVGHPGHIDLEAPVFHLGFFSTVLRICRTICKRCSHV 120
>gi|342183052|emb|CCC92532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1754
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 156/574 (27%), Positives = 265/574 (46%), Gaps = 78/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFVR-REVYP 406
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GDI+ R + +GD+VL NR P++H S++ V
Sbjct: 407 SANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHVINGDVVLFNRQPTLHRMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++ S R
Sbjct: 467 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPTSQRR 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
L + + A + L +Q + ++ L P + K +W+GKQ+FS
Sbjct: 526 AWELCRTVCSEA--TGDKDTFLDKYFVQSVALWLDLWQLPIPAVLK--PRPLWTGKQVFS 581
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYE-GNLFQYLI-KRYRD 598
++LP P + FP D V I G+L+ + + G+L + ++ D
Sbjct: 582 LILPEVNHPTTPHDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLIHVIFNEQGSD 641
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD----TC 654
+V F+ Q V +L G +V + D + + + M+E+ RE +
Sbjct: 642 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQ---MNEVLVKTRENVEKIGAAA 698
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
N + L + M L S+E ++AL++ +A K +++
Sbjct: 699 NNRTLNRKAGMTLLQ----------------SFEADVNSALNKCREEAAKKALSNVR--- 739
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 740 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 787
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 788 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 840
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA +++QF Y +G
Sbjct: 841 KLIKALEDVHAAYDGTVRNA-NEELIQFMYGEDG 873
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 156/577 (27%), Positives = 256/577 (44%), Gaps = 76/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N ERL+ + E
Sbjct: 355 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPFNIERLTQYVQNGPNEH 414
Query: 376 KGELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G +V R G L RR + LE G + R L DGD V+ NR PS+H S++
Sbjct: 415 PGARFVVRSDGTRIDLRHHRRASSIQLEYGWKVERHLIDGDYVIFNRQPSLHKESMMGHR 474
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 475 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNG 533
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLF 548
L+ + QD+L + + V L+ Q+ L ++ P + P + W+GKQ+
Sbjct: 534 PLMGIVQDTLAGVYKMCRRDVFLTKEQVMNLMLWVPDWDGIIPIPAILKPRPRWTGKQIV 593
Query: 549 SMLLP-----------PDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR 597
SM++P PD + F + I G+++ S G +L Y
Sbjct: 594 SMIIPKIINLHMGSDSPDKNHPFKDDGLLIQQGEIMYGLLSKKSVGASGGGIVHLC--YN 651
Query: 598 D----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
+ +DFL Q V+ WL G ++ + D + + Q
Sbjct: 652 ELGPQGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDPKT-------------IELVQKH 698
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N ++ V+ L + L G ++ ++E + S AL+ A A ++
Sbjct: 699 INDEKAEVER----LTKMATNNELEPLPGMNIRETFENKVSTALNMARDKAGTTTEKSLK 754
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSC 765
+L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 755 DL--------NNAVTMARSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH---- 802
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 803 -----FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGY 852
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D YDGTVRN+ G+ ++QF Y +G
Sbjct: 853 IQRRLVKALEDAEAHYDGTVRNSLGD-VIQFVYGEDG 888
Score = 43.5 bits (101), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C ++ C GHFG I+ + HP F+ KLL +C C
Sbjct: 55 LNDPLLGSVDRQFKCKTC-TENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCS 113
Query: 104 TIRKER 109
+ +R
Sbjct: 114 RVLADR 119
Score = 40.4 bits (93), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
++ +D R+ +++ +GI+A L L ++ G + HL ++ + ++
Sbjct: 1346 IEGVDTRRTSTNDLYQIVDVFGIEAARAALLQELTQVLAFDGSYVNHRHLALLVDVMTYR 1405
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + G+ + + + ++ F ++AA G +D+ +G + + G++
Sbjct: 1406 GSIAAVTRHGI-----NRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQM 1460
Query: 1249 PSVGTGGHFDII 1260
+GT GHFD++
Sbjct: 1461 APMGT-GHFDVL 1471
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 154/585 (26%), Positives = 257/585 (43%), Gaps = 94/585 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 354 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 413
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 414 PGAKYVIRSDGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QDSL A+ + L Q+ L ++ P+ + P + W+G
Sbjct: 529 QKNGPLMGIVQDSLAGAYKICRRDTFLDKNQVMNLMLWVPNWDGIIPQPAILKPRPRWTG 588
Query: 545 KQLFSMLLPPDFEYTFP---SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR---- 597
KQ+ SM++P + P S+ G LI A G L L+K+
Sbjct: 589 KQIISMVIPKEISLHAPEDKSESPLRDTGLLIQA----------GELMYGLMKKKNIGSA 638
Query: 598 --------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ + FL Q+V+ WL G ++ + D +
Sbjct: 639 SGGVIHLCYNELGPEGAMAFLNGVQQVVSYWLLQNGHSIGIGDTIPDKQT---------- 688
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
+ + Q + Q+ V + + + +A + E+ + ++E + S AL+ A A
Sbjct: 689 ---IEKVQVHIDTQKAEV-ARLTAMATANELEALPGMN-VRATFENKVSMALNMARDQAG 743
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF- 759
+++ N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 744 TTTQKSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 795
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 796 TLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTA 841
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 842 VKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGD-IIQFLYGEDG 885
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 12 VPSGILTGISLGISTDTEKEKLSV--------MEIGAVSE----VTNPRLGLPNPTNECS 59
P + I G+ + E + +SV ME G + +P LG + +C
Sbjct: 11 APLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDRQFKCK 70
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+C + C GHFG I+ + HP F+ + K+L +C C +
Sbjct: 71 TC-TQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKV 115
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 172/638 (26%), Positives = 284/638 (44%), Gaps = 70/638 (10%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R +TD D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L L ++ + + P + P I
Sbjct: 511 IVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDEVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + + G + + G L
Sbjct: 571 LWSGKQVLSIAIPRGIHLQRFDEGTTLLSPKDNGMLVVDGQIIFGVVDKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + + L+ Q+V+ WL G + + D +A S ++I + I R
Sbjct: 631 HVVTREKGPTICAKLFGNIQKVVNFWLLHNGFSTGIGDT-IADGSTIKEI-TETIADAKR 688
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+ +D Q + L++AK + R S+E L++A A +
Sbjct: 689 KVEDVTKEAQ-------SNLLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEM 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
++ +L N++ M AGSKG+ + + Q S C+G Q R +
Sbjct: 736 NLNDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGK---RIGYGFVDRTL 784
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 785 PHFSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 839
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
RL+ + D+ YDGT RN+ GN ++QF Y +G I Q SL S+AA+
Sbjct: 840 RLVKALEDIMVHYDGTARNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIGGSDAAF 893
Query: 887 SALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLF 924
+ I L+ L+ ++LE GS+ + + SL
Sbjct: 894 EKRYR-IDLMNPKNALD-PSLLESGSEITGDVKLQSLL 929
Score = 43.9 bits (102), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I +LH
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVLHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ S+C C
Sbjct: 95 FIAKIKKVCESVCMHC 110
>gi|31127010|gb|AAF26623.2|AF138973_1 RNA polymerase II largest subunit [Ctenolepisma lineata]
Length = 624
Score = 178 bits (451), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 159/596 (26%), Positives = 262/596 (43%), Gaps = 92/596 (15%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER-LSVCISFRLLEKGELYVCRKG 385
R V+T DPN+++ ++G+P VA+ L E + +N ++ L + G Y+ R
Sbjct: 3 RTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMLDLVRRGNSQYPGAKYIVRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + DGD+V+ NR P++H S++ VKVLP
Sbjct: 63 G----ERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N SP++ DFDGD ++ ++PQ++ R E+ + +Q+I QS + ++ +
Sbjct: 119 STF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQSNKPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V L QM + M P + P I K +W+GKQ+FS+++
Sbjct: 178 QDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPYPSILK--PKPLWTGKQVFSLII 235
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL 592
P PD E P K + K++ G L G+L
Sbjct: 236 PGNVNVTRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGSSAGSLLHIC 295
Query: 593 IKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+ +V Y Q V+ WL + G ++ + D + + EI +++A+
Sbjct: 296 MLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYT------EIQRAIKKAK 349
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + +++ +H N + + R ++E Q + L+ A
Sbjct: 350 E--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------G 392
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSC 765
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 393 GSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK- 451
Query: 766 AAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
Y P + VENS+L GL P E F H++ R+
Sbjct: 452 ---------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 496
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G T E P LS
Sbjct: 497 GYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGETVEFQSLPTLKLS 551
>gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pedetontus saltator]
Length = 722
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 154/594 (25%), Positives = 262/594 (44%), Gaps = 88/594 (14%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R
Sbjct: 3 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPGAKYIIRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + +GD+++ NR P++H S++ VKVLP
Sbjct: 63 G----ERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ +
Sbjct: 119 STF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHITXRQIITPQANKPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V L QM + M P + P I K +W+GKQ+FS+++
Sbjct: 178 QDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILK--PKPMWTGKQVFSLII 235
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL 592
P PD E P K + K++ G L G+L
Sbjct: 236 PGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHIC 295
Query: 593 IKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+ +V Y Q V+ WL + G ++ + D + EI +++A+
Sbjct: 296 MLELGHEVAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYL------EIQKAIKKAK 349
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + +++ +H N + + R ++E Q + L+ A
Sbjct: 350 E--DVIEVIQKAH-NMELEPTPGNTLRQ------TFENQVNRILNDARDKT--------G 392
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSC 765
A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 393 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKX 452
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
R VENS+L GL P E F H++ R+ G
Sbjct: 453 XXGPESR--------------GFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGY 498
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ RRL+ M + YDGT+RN+ G Q++Q Y +G + T E QP LS
Sbjct: 499 IQRRLIKAMESVMVHYDGTIRNSVG-QLIQLRYGEDGLAGETVEFQTQPTIKLS 551
>gi|113957512|gb|ABI49119.1| RNA polymerase II largest subunit [Coccocarpia erythroxyli]
Length = 997
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 148/579 (25%), Positives = 264/579 (45%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + +
Sbjct: 256 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNDH 315
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS H S+
Sbjct: 316 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSXHKESM 371
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 372 MGHRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 430
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ Q+ + ++ P P I K W
Sbjct: 431 QKNGPLMGIVQDTLCGIYKICRRDVFLTKEQIMNILLWVPDWDGVLPQPAILK--PRPRW 488
Query: 543 SGKQLFSMLLPPDFEYTFPS---------KDVYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQ+ S+++P +T PS + +SGG+L+ + + ++I
Sbjct: 489 TGKQIISLVIPTGLNFTMPSGAGWSPLNDNGLMVSGGELMYGLFTKKSVGVTPSAVVHII 548
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + + F AQ V+ WL G ++ + D ++ +++ +
Sbjct: 549 FNEKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNT-------------IQQIE 595
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
+ N Q+ V S A D+E L G ++ ++E + + AL++A DA
Sbjct: 596 NAVNKQKEEVASITRI---ATDNE-LEPLPGMNVRETFESKVARALNKARDDAGTVTEES 651
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKG---NLLKLVQHSLCLGLQHSLAPLSFRF---PHEL 763
++++ N+ M ++GSKG N+ ++ + P F++ PH
Sbjct: 652 LKDI--------NNATQMARSGSKGSTINISQMTAXXXXXXXEGKRIPFGFKYRTLPH-- 701
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 702 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 749
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 750 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 787
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 156/590 (26%), Positives = 259/590 (43%), Gaps = 104/590 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 354 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 413
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 414 PGAKYVIRSDGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QDSL A+ L L Q+ L ++ P+ + P + W+G
Sbjct: 529 QKNGPLMGIVQDSLAGAYKLCRRDTFLDKNQVMNLMLWVPNWDGVIPQPAILKPRPRWTG 588
Query: 545 KQLFSMLLPPDFEYTFP---SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR---- 597
KQ+ SM++P + P S G LI A G L L+K+
Sbjct: 589 KQIISMVIPKEISLHAPEDKSDSPLKDAGLLIQA----------GELMYGLMKKKNIGSA 638
Query: 598 --------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ + FL Q+V+ WL G ++ + D + K ++++
Sbjct: 639 SGGVIHLCYNELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGD------TIPDKQTIEKV 692
Query: 644 FYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
Q+ +D+ + L + + +L G ++ ++E + S AL+ A
Sbjct: 693 --------------QVHIDTQKAEVARLTAMATNNELEALPGMNVRATFENKVSMALNMA 738
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPL 755
A +++ N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 739 RDQAGTTTQKSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPF 790
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 791 GFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMAGREG 836
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 837 LIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGD-IIQFLYGEDG 885
Score = 42.0 bits (97), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 12 VPSGILTGISLGISTDTEKEKLSV--------MEIGAVSE----VTNPRLGLPNPTNECS 59
P + I G+ + E + +SV ME G + +P LG + +C
Sbjct: 11 APLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDRQFKCK 70
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+C + C GHFG I+ + HP F+ + K+L +C C +
Sbjct: 71 TC-TQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKV 115
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 155/578 (26%), Positives = 261/578 (45%), Gaps = 71/578 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGD N+ L E+G+P +A L E + +N RL +
Sbjct: 348 LRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHQYVENG 407
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G YV R G L RR A LE G + R L DGD ++ NR PS+H S+
Sbjct: 408 PNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLIDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL + L L+ Q+ ++ P+ P I K W
Sbjct: 527 QKNGPLMGIVQDSLAGVYKLCRRDTFLTKEQIMNSMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLP--------PDFEYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYL 592
+GKQL SM++P D + P KD + I G+L+ + + ++
Sbjct: 585 TGKQLISMVIPKEVTLHNGTDKKEDAPLKDEGILIQAGQLMYGLPTKKIVGAAAGGIVHI 644
Query: 593 I--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ + + FL Q+V+ WL G ++ + D + K ++++ + E
Sbjct: 645 SYNELGAEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TIPDKATIEKVQVHIDEE 698
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+ + + + +A + E+ + ++E + S AL+QA A +
Sbjct: 699 KAEV--------ARLTAMATANELEALPGMN-VRATFENKVSMALNQARDKAGTTTQKSL 749
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
++ N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 750 KD--------SNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH--- 798
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 799 ------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETG 847
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + DL YDGTVRN+ G+ +VQF Y +G
Sbjct: 848 YIQRRLVKALEDLSARYDGTVRNSLGD-VVQFLYGEDG 884
Score = 40.8 bits (94), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRQFRCKTC-TQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|397135864|gb|AFO11427.1| RNA polymerase I, partial [Kodamaea ohmeri]
Length = 870
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 153/568 (26%), Positives = 263/568 (46%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEFVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + + Q+ + + P + P I +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNICYWIPDWDGVIPPPAIIKPKPLWSG 387
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ S+ +P KD+ + G + + G L +++
Sbjct: 388 KQILSLAIPKGIHLQDGVKDMLSPNDSGMLIVDGEIMFGVVLKKTVGASAGGLIHTVMRE 447
Query: 596 YRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
L+++ Q+++ WL G ++ + D S + M + ++EA++
Sbjct: 448 KGPYECAKLFSSIQKLVNYWLLHNGFSIGIGDTIADSAT------MKNVTETIQEAKEKV 501
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
+++ D+ N L + E +L+ S+E S L+QA A + ++++L
Sbjct: 502 --LEIISDAQQNRL----EPEPGMTLRE---SFEHNVSRILNQARDTAGRSAEMNLKDL- 551
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 552 -------NNVKQMVTSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRTLPHFTKD 601
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 602 DYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 656
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGT RN+ G+ IVQF Y +G
Sbjct: 657 EDIMVHYDGTTRNSLGD-IVQFIYGEDG 683
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 221/903 (24%), Positives = 379/903 (41%), Gaps = 149/903 (16%)
Query: 35 VMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
VME G V + + R+G + C SCG D +C GHFG I+ + H ++S I
Sbjct: 36 VMESGVPKVGGLIDLRMGTTDRMYLCQSCGG-DNFSCPGHFGHIELTKPMFHVGYISKIK 94
Query: 93 KLLNSICPKCKTIRKERQKGAGS------SRKEQPRVCKYCV----------RNPAQWYP 136
K+L +C C I K ++GA S S + VC+ R P
Sbjct: 95 KVLECVCFYCSKI-KIPKRGAKSTLNSVWSMSKGKTVCEGEAVGDERSGCGNRQPVVKKE 153
Query: 137 RMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSC 196
+ K ++ E++ KK+ D+ ++ FD + +P +L+
Sbjct: 154 GLTLVAFMKGEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMILTV 209
Query: 197 KQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRH 256
V V PSI E L + H++ ++ + + KK + H
Sbjct: 210 LLVPP--PSVRPSIVMEGSLRGEDDL---------THKLADIIKSNGYLKKYEQEGAPGH 258
Query: 257 LKKMVDYRGR-DIELSHLVQDCLKISKLHLDKSSR---KDSAEVRQKKNIDISNSSGLRW 312
+ + DY ++ L+ + + L KS R SA ++ K+
Sbjct: 259 IVR--DYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEG----------R 306
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ L+E+G+P +VA+ E++ S+N +RL +
Sbjct: 307 IRGNLMGKRVDFSARTVITPDPNLSLEEVGVPLEVAKIHTFPEKVTSFNIDRLEKLVRTG 366
Query: 373 LLEK-GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPH 423
E G YV R G ++ID LE G ++ R + GD+VL NR PS+H
Sbjct: 367 PNEHPGANYVLRSDG----QKIDLNFNKSDIKLEEGYVVERHMQTGDVVLFNRQPSLHKM 422
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++A +V+ +N SP++ DFDGD ++ ++PQ+ ++ EL EL + KQ+I
Sbjct: 423 SMMAHYARVMD-DKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQII 481
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM-----FCP-----------HR 527
+ QS + ++ + QD+LT L L+ ++ L FC R
Sbjct: 482 SPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFCDTPPGSTGYIGFRR 541
Query: 528 FLSPDIFKISKD-------SVWSGKQLFSMLLPPDFEYT-FPS----------------- 562
DI K+ K +W+GKQ+ S +L P+ YT F S
Sbjct: 542 TKDYDIMKVLKRPAIAKPMRLWTGKQILSFVL-PNMNYTGFSSEHNDEDSENINDTKVII 600
Query: 563 KDVYISGGKL-ISAEGSSWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLS-VRG 619
+D YI G + A G++ +G L + + K F Q ++ +++ +
Sbjct: 601 QDGYIHSGVIDKKAAGAT-----QGGLVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHT 655
Query: 620 MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRS 679
++ + D + + +++E +R+A++ + ++ ++ N L S
Sbjct: 656 FSIGIGDTIADAKTVK---MVEE---AIRKAKEEVSV--IIENARQNRLERLPGMTMKES 707
Query: 680 LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKL 739
+ HL+ R+ +S S A + S +N++ M AGSKG+ + +
Sbjct: 708 FE-SHLNLVLNRARDVSGTS--------------AQRSLSGNNNMKTMVLAGSKGSFINI 752
Query: 740 VQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
Q + C+G Q+ R P S D T ++ + VENS+LTGL+P
Sbjct: 753 SQVTACVGQQNVEGK---RIPFGFSHRTLPHFVKDDYTGRSRGF-----VENSYLTGLDP 804
Query: 800 LECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E F H++ R+ G + RRL+ + D D +VR+ G + Q Y
Sbjct: 805 EEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNG-LVYQVKYG 863
Query: 858 IEG 860
+G
Sbjct: 864 EDG 866
>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
Length = 870
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 160/598 (26%), Positives = 269/598 (44%), Gaps = 81/598 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ +
Sbjct: 148 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNG 207
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R L D D VL NR PS+H
Sbjct: 208 PNEHPGAKYVIRDTG----DRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQPSLH 263
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL + A+ Q
Sbjct: 264 KMSMMCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNICAVPLQ 322
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L + + + QM + + P +P I K
Sbjct: 323 IVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIEYDQMMNILYWIPEWDGVIPAPTILK--P 380
Query: 539 DSVWSGKQLFSMLLPP-------DFEYTFPSKD----VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQ+ SM +P D T S + + I G L + G
Sbjct: 381 KPLWTGKQMLSMTIPKGIHLQRFDEGTTLLSPNDNGMLVIDGQILFGVVDKKTVGATNGG 440
Query: 588 LFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L +++ + D Q+V+ WL G ++ + D + + M EI
Sbjct: 441 LIHTVMREKGPRACADLFGNIQKVVNFWLLHNGFSIGIGDTIADAGT------MKEITEA 494
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ A++ +++ +++ N L +AK + R S+E L++A A +
Sbjct: 495 IAIAKEKV--EEVTLEAQQNKL-TAKHGMTLRE------SFEDNVIRYLNEARDKAGRSA 545
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
+++ L N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 546 EVNLKGL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLP 597
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E + H++ R+
Sbjct: 598 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTAVKT 643
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSL 876
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G G + Q + +L
Sbjct: 644 AETGYIQRRLVKALEDIMVHYDGTTRNSMGN-IIQFIYGEDGLD--AGHVEKQTIDTL 698
>gi|171677863|ref|XP_001903882.1| hypothetical protein [Podospora anserina S mat+]
gi|170937000|emb|CAP61658.1| unnamed protein product [Podospora anserina S mat+]
Length = 1521
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 159/604 (26%), Positives = 268/604 (44%), Gaps = 95/604 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPN+ ++++ +P +VA+ L ER+++ N ++L C+ E G
Sbjct: 374 GKRVDFSGRTVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKLKACVRNGPTEYPG 433
Query: 378 ELYVCRKGGL--------------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
L + + G + + D L +GD++ R L D DIVL NR PS+H
Sbjct: 434 ALQITKNQGEENEMKFLLKHMKPHILEKNADNLRIGDVVERHLEDNDIVLFNRQPSLHKL 493
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S+++ K+ P + +N CSP++ DFDGD ++ ++PQ AR E L+ + L
Sbjct: 494 SIMSHYAKIRPWRTF-RLNECVCSPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLC 552
Query: 484 NQQSGRNLLSLGQDSLTAAHLL-----MEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISK 538
++G +++ QD +TAA+LL D +++ Q L P I K
Sbjct: 553 TPKNGEPIIAATQDFITAAYLLSGKDRFYDRSSFTYICTQMLLGDTYLELPPPAILK--P 610
Query: 539 DSVWSGKQLFSMLLPPDFE----YTFPSKDVYISGGKLISAE------------------ 576
++W+GKQ+F++++ P+ E +K+ + G L +
Sbjct: 611 KALWTGKQIFNVMMRPNKESPVLVNLDAKNKVYNKGNLQPPDMDIDDSFLVVRNSEVICG 670
Query: 577 --GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEW----LSVRGMTVSLSDLYLA 630
S + + + N Y+I RD D+ A L + L++RG ++ + D++ +
Sbjct: 671 RMDKSTVGEGKKNSVFYVI--LRDYGADYAAATMNRLAKLCARSLTLRGFSIGVGDVFPS 728
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ 690
K+++ L +A C+ + + L A + +L E +
Sbjct: 729 QALTEHKLML------LEKATTVCD--GFISQAENGTLEKAPGCDMKETL-------ETK 773
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
S LS A + +NL S++N+ L M K+GSKG+ + + Q C+G Q
Sbjct: 774 LSGTLSAVRQAAGSYC---TENL-----SRNNAPLIMAKSGSKGSEINVAQMIACVGQQI 825
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
R GD AK + V+NSF TGL+P E H+++ R
Sbjct: 826 IGGK---RVADGFQNRTLPHFEKGDKRAAAKGF-----VKNSFYTGLHPTEFLFHAISGR 877
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEG 860
+ G ++RRLM + DL T YD TVR + G IVQF Y ++EG
Sbjct: 878 EGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGG-IVQFQYGADRLDPVDMEG 936
Query: 861 TSTP 864
+ P
Sbjct: 937 DARP 940
Score = 48.1 bits (113), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 46 NPRL---GLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+PRL P P +C +C +D C GHFG +K P + H +L I L +IC C
Sbjct: 68 DPRLQGTSSPKPDAKCHTC-HQDLMGCPGHFGHVKLPLPVFHIGYLKYIQATLQNICKSC 126
Query: 103 KTI 105
I
Sbjct: 127 SRI 129
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 222/897 (24%), Positives = 378/897 (42%), Gaps = 137/897 (15%)
Query: 35 VMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
VME G V + + R+G + C SCG D +C GHFG I+ I H ++S I
Sbjct: 36 VMEGGVPKVGGLIDLRMGTTDRMYLCQSCGG-DNFSCPGHFGHIELTKPIFHVGYISKIK 94
Query: 93 KLLNSICPKCKTIRKERQKGAGS------SRKEQPRVCKYCV----------RNPAQWYP 136
K+L +C C I K ++G S S + VC+ V R P
Sbjct: 95 KVLECVCFYCSKI-KVPKRGVRSTLNNVWSMSKGKSVCEGEVVGDGRSGCGNRQPVVKKE 153
Query: 137 RMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSC 196
+ K ++ E++ KK+ D+ ++ FD + +P + +
Sbjct: 154 GLTLVAFMKGEESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYS----RPEWMIFTV 209
Query: 197 KQVSYLLKDVDPSIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRH 256
V V PSI E L + H++ ++ + + KK + H
Sbjct: 210 LLVPP--PSVRPSIVMEGSLRGEDDL---------THKLADIIKSNGYLKKYEQEGAPGH 258
Query: 257 LKKMVDYRGR-DIELSHLVQDCLKISKLHLDKSSR---KDSAEVRQKKNIDISNSSGLRW 312
+ + DY ++ L+ + + L KS R SA ++ K+
Sbjct: 259 IVR--DYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEG----------R 306
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI L+E+G+P +VA+ E++ S+N ++L +
Sbjct: 307 IRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEVAKVHTFPEKVTSFNIDKLEKLVRTG 366
Query: 373 LLEK-GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPH 423
E G YV R G ++ID LE G I+ R + GD+VL NR PS+H
Sbjct: 367 PNEHPGANYVLRSDG----QKIDLNFNKSDIRLEEGYIVERHMQTGDVVLFNRQPSLHKM 422
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++A +V+ +N SP++ DFDGD ++ ++PQ+ ++ EL EL + KQ+I
Sbjct: 423 SMMAHYARVMD-DKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSKQII 481
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM-----FCP-----------HR 527
+ QS + ++ + QD+LT L L+ ++ L FC R
Sbjct: 482 SPQSNKPVMGIVQDTLTGLRLFTLRDTFLNEREVMLLLYAVNIEFCDTPPGGTSYMELRR 541
Query: 528 FLSPDIFKISKD-------SVWSGKQLFSMLLPPDFEYTFPSK-----DVYISGGKLISA 575
DI K+ K +W+GKQ+ S +LP F S+ + IS K+I
Sbjct: 542 TKDYDIMKVLKRPAIAKPMKLWTGKQILSFVLPNMNYVGFSSEHNDNDNENISDTKVIIQ 601
Query: 576 EG--SSWLRD------YEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLS-VRGMTVSLS 625
+G S + D +G L + + K F Q ++ +++ + ++ +
Sbjct: 602 DGYIHSGVIDKKAAGATQGGLVHIIFNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIG 661
Query: 626 DLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
D + + K++ + I R+A++ + ++ ++ N L S + HL
Sbjct: 662 DTIADAKTV--KMVKEAI----RKAKEEVSV--IIENARQNRLERLPGMTMKESFE-SHL 712
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ R+ +S S A + S++N++ M AGSKG+ + + Q + C
Sbjct: 713 NLVLNRARDVSGTS--------------AQRSLSENNNMKTMVLAGSKGSFINISQVTAC 758
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
+G Q+ R P S D T ++ + VENS+LTGL+P E F H
Sbjct: 759 VGQQNVEGK---RIPFGFSHRTLPHFVKDDYTGRSRGF-----VENSYLTGLDPEEFFFH 810
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ + D D +VR+ G + Q Y +G
Sbjct: 811 AMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNG-LMYQIKYGEDG 866
Score = 40.4 bits (93), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 72/368 (19%), Positives = 135/368 (36%), Gaps = 76/368 (20%)
Query: 943 VKNHLECLMLSDIVSTSMIIYSPQTGSM-----KHF-----------------SPWICHF 980
++N +ECL + D+ +S I Y P+ S K F SP++
Sbjct: 1118 IQNEIECLCVKDLCLSSEIYYDPEITSTEIAEDKDFVETYFEFPDDDVDFSCLSPFLMRL 1177
Query: 981 HVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFC 1040
V + + G + +S+ ++ + + C+D
Sbjct: 1178 IVDRAKLVGRGANLEYVAESIRKELGSGAHVI----------------------CSDENA 1215
Query: 1041 VTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFG 1100
V ++I ++ + M ++ LLK ++G++ +KKV I S D
Sbjct: 1216 VHMVIRIRVGKSEDESLNFYMTILNSLLKLQLRGYKSVKKVYI----------SEDKDKK 1265
Query: 1101 ELYLRVSMSGQCHITSLWSALMNDCHQIM-DMIDWTRSHPDNIRSFCLAYGIDAGLQFFL 1159
E YL+ G C L + +N I D+I+ + GI+A + L
Sbjct: 1266 EWYLQT--DGTCLPQVLGNPAVNSRLTISNDLIEIAET-----------LGIEAARESIL 1312
Query: 1160 TNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSN 1219
L I G + H+ ++A+ ++ G G+ G+ + + + ++ F
Sbjct: 1313 RELAMVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGV-----NKAGAGALKRSSFEE 1367
Query: 1220 PGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGG---HFDIIYSGEGRTLSKPVDVYN 1276
+ AA + +G + + G++ +GTG D+ + LS PV N
Sbjct: 1368 TVEILLDAALVSEKNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVFKPN 1427
Query: 1277 LLSTPVSS 1284
TPV S
Sbjct: 1428 EPVTPVIS 1435
>gi|410670214|ref|YP_006922585.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
gi|409169342|gb|AFV23217.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
Length = 880
Score = 177 bits (450), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 152/583 (26%), Positives = 269/583 (46%), Gaps = 79/583 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV-CISFRLLEKG 377
GKR + R VV+ +PN+ + E+G+P ++A ++ I ER+ + N + L + + + G
Sbjct: 315 GKRVNFSARTVVSPEPNLSINEVGVPFEIAHQMTIPERVTTRNIDLLRMYVLRGSEVHPG 374
Query: 378 ELYVCRKGGL-VRIRRIDALELGD------IIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R+ G +R+ I+ EL + ++ R L DGDIVL NR PS+H S++A V
Sbjct: 375 ANYVIREDGRRIRVSEINKEELAEKIQTGWVVERQLMDGDIVLFNRQPSLHKMSIMAHRV 434
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP + +NP C P++ DFDGD ++ ++ Q +R E + L+ + + +++ + G
Sbjct: 435 KVLPYKT-FRLNPAVCPPYNADFDGDEMNMHVLQTEESRAEASILMQVQENILSPRFGGP 493
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL-SPDIFKISKDSVWSGKQLFS 549
++ D ++ LL + ++ +L R L P + + +W+GKQ+FS
Sbjct: 494 IIGGIHDHISGLFLLTRNENSITKTAALELLRKSDIRVLPEPSSYTADGEPLWNGKQIFS 553
Query: 550 MLLPPDFEYTFPSKD-----------------VYISGGKLISAEGSSWLRDYEGNLFQYL 592
+LP FP++ V I G++I +G + +
Sbjct: 554 QILPKGLYLEFPAQVCFKCDTCKKRDCEYEAYVVIENGEMI-----------QGTIDEQA 602
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
I ++ K+LD +V+ E+ + G LA R ++ + +G+ + +D
Sbjct: 603 IGAFKGKILD------KVVKEYGTEAGAKFVDDFTRLA----IRGVMKTGLSFGISD-ED 651
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD---------AF 703
++ + + +N E+ ++Q +YE + AL ++D
Sbjct: 652 IPTTAKMQIANLLN--------EAEENVQRLIQAYEAKELEALPGRTMDETIEMKIMQEL 703
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
N+A + +NS + M K+G++G++L L Q + C+G Q A R
Sbjct: 704 GKARDQTGNIAGRQLGLENSAVIMAKSGARGSMLNLTQMAACVGQQ---AVRGERIRRGY 760
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DL 820
+ GD A+ + V+ S+ +GLNP E F H++ R+ D A
Sbjct: 761 NGRTLPHFDKGDLGADARGF-----VKASYKSGLNPTEYFFHAIGGRE-GLVDTAVRTSQ 814
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G L RRL+ ++DL YDG+VR G IVQF Y +G +
Sbjct: 815 SGYLQRRLVNALQDLEVQYDGSVRETRG-VIVQFKYGEDGIDS 856
Score = 47.0 bits (110), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
RLG+ +P +C +CG++ + C GHFG I+ ++H F I K L SIC C
Sbjct: 53 RLGVIDPGLKCKTCGSRAGE-CPGHFGHIELVAPVIHVGFNKTIRKALRSICHNC 106
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 152/584 (26%), Positives = 266/584 (45%), Gaps = 76/584 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISF- 371
I+ ++GKR D R V+T DPN+ L E+G+P +A + E + +N ERL +
Sbjct: 327 IRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPEMVTPYNIERLRKLVENG 386
Query: 372 ---RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPP 418
E G Y+ R+ G +R+D LE G + R + +GD VL NR P
Sbjct: 387 PHPPPGETGAKYIIREDG----QRLDLRFLKKESDKRLEYGYRVERHMINGDCVLFNRQP 442
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ V+++P S+ +N P++ DFDGD ++ ++PQ++ R E+ EL+ +
Sbjct: 443 SLHKMSIMGHRVRIMPYSTF-RMNISVTPPYNADFDGDEMNMHLPQSLETRAEVQELMMV 501
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFK 535
K +++ Q+ + ++++ QD+L A+ L+ + + + M+ + + P I K
Sbjct: 502 PKMIVSPQANKPVMAIVQDTLLASRLMTKRDTFIKKDVFMNILMWLENWDGKVPKPAILK 561
Query: 536 ISKDSVWSGKQLFSMLLP--------------PDFEYTFPSKDVYISGGKLISA-EGSSW 580
+ +W+GKQ+F+M LP +++ V I G+LI+
Sbjct: 562 --PEPLWTGKQVFTMFLPDVSLTKQSAWAKDNDPHDFSVEDTGVRIEKGELITGILCKKT 619
Query: 581 LRDYEGNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
L G L + + + F+ Q +L WL G T+ +SD + + +
Sbjct: 620 LGSGGGGLIHVIWEEWGPTAARGFVSQVQWLLNYWLLQHGFTIGISDTI--ADDGTMNSI 677
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
D I ++ ++ Q +A + + ++Q S+E++ + L++A
Sbjct: 678 NDTITKAKQDVKEVIALAQ----------TNALELQPGMTMQQ---SFEQKVNQILNKAR 724
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
+A N A N++ AGSKG+ L + Q C+G Q+ R
Sbjct: 725 DNA--------GNSAQGSLDDTNNVKMTVTAGSKGSFLNISQMIACVGQQNVEGK---RI 773
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA- 818
P + D ++ + VENS+L GL P E F H++ R+ D A
Sbjct: 774 PFGFDGRSLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGRE-GLIDTAV 827
Query: 819 --DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 828 KTSETGYIQRRLVKAMEDIIVKYDGTVRNSAGD-VIQFLYGEDG 870
>gi|296243131|ref|YP_003650618.1| DNA-directed RNA polymerase subunit A' [Thermosphaera aggregans DSM
11486]
gi|296095715|gb|ADG91666.1| DNA-directed RNA polymerase, subunit A' [Thermosphaera aggregans
DSM 11486]
Length = 881
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 159/589 (26%), Positives = 259/589 (43%), Gaps = 93/589 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R VV+ DPN+ + E+G+P VA+ L I E++ WN E + + ++ G
Sbjct: 315 GKRVDFSARTVVSPDPNLSINEVGVPEMVAKILTIPEKVTPWNIEEMRKLVLNGPDKWPG 374
Query: 378 ELYVCRKGGL-VRIRRID------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G + ++ +D +L G I+ R L DGDIVL NR PS+H S++A V
Sbjct: 375 ANYIVRPDGRKISLKYVDRKAAAESLAPGYIVERHLLDGDIVLFNRQPSLHRISVMAHVV 434
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VLP ++ +N L C P++ DFDGD ++ ++PQ+ AR E L+ ++K ++ + G
Sbjct: 435 RVLPYKTL-RLNVLVCPPYNADFDGDEMNLHVPQSEEARAEARLLMLVEKHILTPRYGGP 493
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSM 550
++ QD ++ A +L S +L ++ +L + P+ + W+GKQL S+
Sbjct: 494 IIGGLQDYISGAFVLTSKSTILRKEEVAELLGVAGYHEAIPEPAILKPKEYWTGKQLVSV 553
Query: 551 LLPPDFEYTFPSK------------------DVYISGGKLISA--EGSSWLRDYEGNLFQ 590
LP D Y SK V I G L+ + +S R+ +L
Sbjct: 554 FLPKDLNYRRNSKLAGASALRCVDEDCPHDSIVIIKKGVLLEGVLDKASIGREEPESLIH 613
Query: 591 YLIKRY--------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA--SHSCSRKILM 640
+LIK Y +D+V A E G+T+ S L L + R+I++
Sbjct: 614 WLIKEYGEDIGRLFKDRVYKMFLRASEKY-------GLTMGYSHLSLPELAREKIRQIIL 666
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
++ ++L+ L +L+ E + LS+ +
Sbjct: 667 EK----------KNRVEELIRIYRQGKLTPRPGKTPEETLEDEIVDL-------LSKRLL 709
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH------SLAP 754
D D+ + Y + N ++ M + G++GN + L Q + LG Q S
Sbjct: 710 D-------DVADTITPYFTLTNPVVIMARTGARGNPVNLTQMAALLGQQTVRGKRLSRGY 762
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
L PH + D A+ +I N F+ GL LE F H+ R+
Sbjct: 763 LYRPLPH---------FKQKDIGPEARGFI-----ANGFVNGLEALEMFFHAAAGREGLI 808
Query: 815 SD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G + RRL+ ++DL YDGTVR G ++VQ Y +G
Sbjct: 809 DTAVRTSQSGYMQRRLINALQDLRVEYDGTVRTTSG-ELVQLVYGEDGV 856
Score = 50.8 bits (120), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 20 ISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKDRKA 68
I G+ + E KLSV +I GA + V + RLG P C CG R +
Sbjct: 8 IRFGLLSPEEIRKLSVTQIITSDVYDNDGAPIDGGVMDKRLGAIEPGETCPVCG-NTRDS 66
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR---KERQK 111
C GHFG I+ ++H F I L + C +C I+ KERQ+
Sbjct: 67 CPGHFGHIELTKPVIHAGFAKHILMYLKATCRECGRIKIPEKERQE 112
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 150/581 (25%), Positives = 264/581 (45%), Gaps = 70/581 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISF- 371
++ ++GKR D R V++GDPNI + E+G+P +A L E + N++ L +
Sbjct: 267 VRGNLMGKRVDFSARTVISGDPNISIDELGVPWSIALNLTYPETVTPHNYKWLQQLVENG 326
Query: 372 ---RLLEKGELYVCRKGGL---VRIRRIDA---LELGDIIYRPLTDGDIVLINRPPSIHP 422
+ G Y+ R+ G +R R D+ LE G + R L +GD VL NR PS+H
Sbjct: 327 PHPPAGQTGAKYIIREDGQRLDLRFLRKDSDRHLEFGYKVERHLVNGDYVLFNRQPSLHK 386
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ V++LP S+ +N SP++ DFDGD ++ ++PQ R E E++ + + +
Sbjct: 387 MSMMGHKVRILPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQTPETRTETREIMMVPRNI 445
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKD 539
++ Q+ + ++ + QD+L L+ + + + M+ + P I K
Sbjct: 446 VSPQANKPVIGIVQDTLLGCRLMTKRDTFIEKDLFMNILMWLEDWDGKIPMPAILK--PK 503
Query: 540 SVWSGKQLFSMLLP--------------PDFEYTFPSKDVYISGGKLISAE-GSSWLRDY 584
+W+GKQ++++ +P +++ V I G+L++ L
Sbjct: 504 PLWTGKQVYNLFMPRVNIRRQSAWYKDNEPLDFSPSDSQVLIQNGELLTGTLCKKTLGAS 563
Query: 585 EGNLFQYL-IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
G+L + ++ + FL +Q WL G ++ + D + + M+ I
Sbjct: 564 AGSLIHVIWMEEGPEAARAFLSQSQYTTNHWLLQHGFSIGIGD------TVADAKTMNII 617
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
+ EA++ +L+ + N + A+ + S+E+Q + L+ A DA
Sbjct: 618 SETIAEAKEKV---KLLTEKLQNRDLEARPGMTMME------SFEQQVNQVLNTARDDAG 668
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
K LA N+++ M AGSKG+ + + Q C+G Q+ R P
Sbjct: 669 K--------LAQSSLDDTNNVVRMVTAGSKGSFINISQMIACVGQQNVEGK---RIPFGF 717
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR----DSSFSDNAD 819
D ++ + VENS+L GL P E F H++ R D++ ++
Sbjct: 718 QRRTLPHFTKDDLGPESRGF-----VENSYLRGLTPQELFFHAMGGREGLIDTAVKTSST 772
Query: 820 LPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M DL YDGTVR A G+ +VQF Y +G
Sbjct: 773 --GYIQRRLVKAMEDLMIKYDGTVRTANGS-VVQFLYGEDG 810
Score = 40.4 bits (93), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D+ R+ +++ GI+A L + I G + HL + +++++ G F
Sbjct: 1265 VDYRRTISNHLVEIIEVLGIEAARNALLKEMRGVIEFDGSYVNYRHLAALVDSMTSRGHF 1324
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P Q F +AA D++ G + + G++ +
Sbjct: 1325 MAITRHGINRQE-----NGPLAQCSFEETVDILFRAAAFSEKDHMTGVSENIMLGQLAPL 1379
Query: 1252 GTG 1254
GTG
Sbjct: 1380 GTG 1382
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica T-34]
Length = 1947
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 156/581 (26%), Positives = 266/581 (45%), Gaps = 77/581 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR + R V+TGDP ++L E+G+P +A L ER+ ++N LS +
Sbjct: 513 LRGNLMGKRVNFSARTVITGDPLLELDEVGVPKSIARNLTYPERVTAYNRAWLSELVRNG 572
Query: 373 LLE-KGELYVCRKGG----LVRIRRID-ALELGDIIYRPLTDGDIVLINRPPSIHPHSLI 426
+ G YV R G L RR D AL+ G I+ R L DGD +L NR PS+H S++
Sbjct: 573 PNDYPGAKYVIRDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMM 632
Query: 427 ALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQ 486
+ +K++ S+ +N P++ DFDGD ++ ++PQ+ R EL+++ + +Q+++ Q
Sbjct: 633 SHRIKLMDYSTF-RLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQ 691
Query: 487 SGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGK 545
+ + ++ + QD+L LL + Q+QQ+ ++ + P + WSGK
Sbjct: 692 ANKPVMGIVQDTLCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGK 751
Query: 546 QLFSMLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
Q+ SM +P F KD V I G+++ + + ++I
Sbjct: 752 QILSMCIPKGIN-VFLDKDKGLKNNFLKDDGVCIENGEIMYGVINKKVVGASAGGLIHII 810
Query: 594 KRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
R + V+ F Q V+ WL G ++ + D + + K D I + +A+
Sbjct: 811 FREKGPVVCKRFFSGVQRVVNFWLLHNGFSIGIGD------TVADKATTDSINQTISDAK 864
Query: 652 DTCNFQQLMVDSHMNFLMSAKDS----ESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
M+++ A+ E+ +L+ S+E + L+QA D H
Sbjct: 865 AAV----------MDYIEYARHDWLKVEAGMTLRE---SFEANVNRVLNQARDDVGNHAE 911
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPH 761
+ + N++ M AGSKG+ + + Q S C+G Q P FR PH
Sbjct: 912 SSLPDF--------NNVKQMVVAGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPH 963
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D T ++ + VENS+L GL E F H++ R+
Sbjct: 964 ---------FTKDDFTPESRGF-----VENSYLRGLTAQEFFFHAMAGREGLIDTAVKTA 1009
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ N ++QF+Y +G
Sbjct: 1010 ETGYIQRRLVKALEDVMVCYDGTVRNST-NNVIQFAYGEDG 1049
Score = 47.8 bits (112), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
+ +++PRLG + +C +CG + + C GHFG I + H +L + K+L +C
Sbjct: 217 IGGLSDPRLGTLDRNYKCQTCG-EGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCF 275
Query: 101 KCKTIRKE----------RQKGAGSSRKEQPRVCKYCVR 129
C ++ + + GS ++ RV +YC +
Sbjct: 276 HCGKLKADVLTDPVFDQIVKATRGSRKRRFQRVWEYCSK 314
>gi|397135948|gb|AFO11469.1| RNA polymerase I, partial [Starmerella bombicola]
Length = 869
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 157/597 (26%), Positives = 277/597 (46%), Gaps = 81/597 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR + R V+TGDPN++L ++G+P +A L E + +N RL+ + E
Sbjct: 152 LMGKRVNFSARTVITGDPNLELDQVGVPKSIARTLSYPETVTPYNIHRLTEYVRNGPNEH 211
Query: 377 -GELYVCRKGGLVRIRRIDAL---ELGDI-------IYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID +GDI + R L D D VL NR PS+H S+
Sbjct: 212 PGAKYIIRDSG----ERIDLRYHKRVGDIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSM 267
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++
Sbjct: 268 MAHRVKVMPFSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 326
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + L + +Q + + P+ + P + +W+G
Sbjct: 327 QSNKPVMGIVQDTLCGIRKMTLRDTFLDYHSVQNILFWVPNWDGVVPQPAILKPKPLWTG 386
Query: 545 KQLFSMLLPPD-FEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR-------- 595
KQ+ SM +PP F F + I++ + + Y+G + ++ +
Sbjct: 387 KQMVSMAIPPGIFMQRFDENNP-------INSPKDNGMLVYKGEVMYGVVNKKTVGATAG 439
Query: 596 ------YRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+R+K F+ Q+++ WL G ++ + D + + M +
Sbjct: 440 GLIHTIFREKGPQACSQFVGDLQKIVNYWLLHVGFSIGIGD------TIADAATMYNVTQ 493
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+ +A+ QQ++ D+ N L + E +L+ S+E L+ A + +
Sbjct: 494 TIADAK--SKVQQIINDAQANTL----NPEPGMTLRE---SFEASVIRELNSARDTSGRE 544
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELS 764
+++ DN++ M AGSKG+ + + Q S C+G Q + F F + S
Sbjct: 545 AETSLKD--------DNNVKQMVSAGSKGSFINISQMSACVGQQIVEGKRIGFGFV-DRS 595
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
+ R D + +K + VENS+L GL P E F H++ R+ G
Sbjct: 596 LPHFTR---DDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 647
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSAC 879
+ RRL+ + D+ YDG+ RN+ G+ ++QF Y +G G++ Q + SL
Sbjct: 648 YIQRRLVKALEDVMVQYDGSARNSLGD-VIQFVYGEDGLD--GGQVESQTLDSLPGS 701
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 177 bits (449), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 160/581 (27%), Positives = 262/581 (45%), Gaps = 77/581 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGD N+ L E+G+P +A L E + +N +L +
Sbjct: 350 LRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENG 409
Query: 373 LLE-KGELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G YV R G L RR A LE G + R L GD ++ NR PS+H S+
Sbjct: 410 PNEHPGAKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 470 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L V L+ Q+ ++ P+ P I+K W
Sbjct: 529 QKNGPLMGIVQDSLAGAYKLCRRDVFLTKEQIMNCMLWVPNWDGVIPQPAIYK--PRPRW 586
Query: 543 SGKQLFSMLLP--------PDFEYTFPSKD--VYISGGKLISA-EGSSWLRDYEGNLFQY 591
+GKQL SM++P D P KD + I G+L+ + G +
Sbjct: 587 TGKQLISMVIPKEVSLFNGTDSGENAPLKDEGLLIQAGQLMYGLLTKKNIGAAAGGIVHI 646
Query: 592 LIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMDEIFYGLRE 649
+ + FL Q+V+ WL G ++ + D + + ++ ++ +DE
Sbjct: 647 SYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTIPDAATIAKVQVHIDE------- 699
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVF 707
+ +L + N L +L G ++ ++E + S AL+QA A
Sbjct: 700 --EKAEVARLTAMATANEL---------EALPGMNVRATFENKVSMALNQARDKAGTTTQ 748
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PH 761
+++ N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 749 KSLKD--------SNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH 800
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D + A+ + VENS+L GL P E F H++ R+
Sbjct: 801 ---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTA 846
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ IVQF Y +G
Sbjct: 847 ETGYIQRRLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDG 886
Score = 41.2 bits (95), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRQFRCKTC-TQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|268323372|emb|CBH36960.1| probable DNA-directed RNA polymerase, subunit A' [uncultured
archaeon]
Length = 889
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 207/905 (22%), Positives = 366/905 (40%), Gaps = 121/905 (13%)
Query: 24 ISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTIL 83
I+ DT E +E+G V N R+G+ +P C +CG + C GHFG I+ I+
Sbjct: 28 ITPDTYGEDGFPIELGLV----NQRIGVIDPGLRCKTCGGR-MGECPGHFGHIELAAPII 82
Query: 84 HPYFLSDIAKLLNSICPKC-KTIRKERQKGAGSSRKEQPRVCKYCVRNPAQWYPRMRFKL 142
H + I ++L + C +C K + E + EQ + + V + ++ FK
Sbjct: 83 HVGYAKMIYRILAATCRRCGKVLLGEEARAKFLDGIEQQKEKQADVGDVV----KLVFKE 138
Query: 143 SSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPN---RKVLSCKQV 199
++K+ + +++ K+ K D G+I D + +E + P ++
Sbjct: 139 AAKN------DVCPFCDEIQKRIKY--DKPTGYIEIDKEDKERRLMPTDVRERLEKIPDD 190
Query: 200 SYLLKDVDP-SIREEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLK 258
L +DP + R E+++ + PV P VT P + D+ T L
Sbjct: 191 DIPLFGMDPKNARPEWMI------ITVLPVPP----VTARPSITLESGQRSEDDLTHKLV 240
Query: 259 KMVDYRGRDIELSH------LVQDCLKISKLHLDK----------SSRKDSAEVRQKKNI 302
++ R +E +++D ++ + H+ +R S +
Sbjct: 241 DIIRINQRFMENRDAGAPQLIIEDLWELLQYHVSTYFNNEIPSIPPARHRSGRPLKTMTQ 300
Query: 303 DISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNW 362
+ G + + GKR + R V++ DP I++ E+G+P +A+ L I+ + N
Sbjct: 301 RLKGKEG--RFRGSLSGKRVNFSARTVISPDPEIEIDEVGVPKDIAKELTINVNVTERNL 358
Query: 363 ERLSVCISFRLLEKGELYVCRKGGL-VRIRRI------DALELGDIIYRPLTDGDIVLIN 415
E + + G YV R V++ + L +G + R L DGDIVL N
Sbjct: 359 EAIRETLKRGSKHPGANYVRRSDDKKVKVTETNHELLAEELGVGWKVERHLQDGDIVLFN 418
Query: 416 RPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
R PS+H S++A V+V+P +NP C P++ D+DGD ++ ++ Q AR E L
Sbjct: 419 RQPSLHRLSIMAHYVRVMP-GRTFRLNPTVCPPYNADYDGDEMNMHVLQTEEARAEAKIL 477
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ-LQMFCPHRFLSP-DI 533
+A+ + +++ + GR ++ D +T +L + Q L H P
Sbjct: 478 MAVKRNIMSPRFGRPIIGGIHDYITGLFILTWGEKRFEKEKAQDMLNRINIHDLGEPAGT 537
Query: 534 FKISKD---SVWSGKQLFSMLLPPDFEYTFPS-------------------KDVYI---S 568
F+ S W+GKQLF +LP + F ++ Y+
Sbjct: 538 FESSSGIQVPYWTGKQLFGRILPKQMDLQFRGVVCGKCIERGEKCKKENCPREAYVVIKE 597
Query: 569 GGKLISAEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL 627
G L + ++G + + + + Y D+ F+ + + + G + +SD
Sbjct: 598 GNLLCGVIDEMAIGSFKGKIIEQIFRLYGEDEAKKFINDSARLAINCIKQSGFSFGISDE 657
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
+ ++ + +E Y + + L+ A D+E +L G L
Sbjct: 658 DIPKEGKAQ--IREEAVYA--------------AEHKVEELIRAYDAEELEALPGRSL-- 699
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
L + D ++A +Y +N+ + M K+G++G++L L Q + C+G
Sbjct: 700 ----EETLELLIMQELGRARDDAGDIAERYLGIENAAVLMAKSGARGSMLNLTQMAACVG 755
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q R ++GD A + V SF GL E F+H+V
Sbjct: 756 QQSVRGE---RINRGYQGRTLPHFKSGDRRAEAHGF-----VRASFKDGLTATEYFLHAV 807
Query: 808 TSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
R+ + D A G RRL+ ++DL DGTVR G +VQF Y +G
Sbjct: 808 GGRE-ALVDTAVRTSQSGYFQRRLINALQDLEVKNDGTVRETRGT-VVQFKYGDDGVDPS 865
Query: 865 TGEIG 869
E G
Sbjct: 866 KSECG 870
>gi|296109331|ref|YP_003616280.1| DNA-directed RNA polymerase subunit A' [methanocaldococcus infernus
ME]
gi|295434145|gb|ADG13316.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus infernus
ME]
Length = 886
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 222/926 (23%), Positives = 378/926 (40%), Gaps = 164/926 (17%)
Query: 24 ISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTIL 83
++ DT E +E G + +PRLG+ +P C +CG + + C GHFG I+ I+
Sbjct: 29 VTPDTYDEDGYPIEGG----LMDPRLGVIDPGLRCKTCGGRIGE-CPGHFGHIELAKPII 83
Query: 84 HPYFLSDIAKLLNSICPKCKTI------------RKERQKGAGSSRKEQPR--------- 122
H F I K+L ++CP C I + E+ + G ++ E +
Sbjct: 84 HVGFAKTIYKILKAVCPHCGRILIPENKRREILEKMEKLEREGGNKWEACKETYQEASKI 143
Query: 123 -VCKYC--------VRNPAQWY---PRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPD 170
VC YC P+ +Y KLS D+ EI EK+ PD
Sbjct: 144 SVCPYCGEVKWEIKFEKPSSFYRIEEGAEIKLSPADVR-------EILEKI-------PD 189
Query: 171 DYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFLKCFPVT 229
+ + + + +P VL+ V + V PSI E S+D K +
Sbjct: 190 EDCILLGLNPK----VARPEWMVLTVLPVPPVT--VRPSITLETGERSEDDLTHKLVEIV 243
Query: 230 PNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSS 289
N+R+ E H S L ++ L+ +D D EL + + + +
Sbjct: 244 RTNNRLME--HIESGAPNLVVEDVWSLLQYHIDTY-FDNELPGISPAKHRSGRPLKTLAQ 300
Query: 290 RKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAE 349
R E R + N+ GKR + R V++ DP + + E+G+P VA+
Sbjct: 301 RLKGKEGRFRYNL---------------AGKRVNFSSRTVISPDPCLSINEVGVPEVVAK 345
Query: 350 RLQISERLNSWNWERLSVCI-SFRLLEKGELYVCR----KGGLVRIRRI----------- 393
L + E++ +N E++ I + G Y+ R + G+V RI
Sbjct: 346 ELTVPEKVTKYNIEKIKELIKNGPNKHPGAKYIIRQIVGRDGMVHEYRIKLDENNKDFWV 405
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
+ ++ GDI+ R L DGDIVL NR PS+H S++ V+VLP + N C P++ DF
Sbjct: 406 ENIKEGDIVERHLMDGDIVLYNRQPSLHRMSIMGHKVRVLPYRTFRH-NLCVCPPYNADF 464
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGD ++ + PQ AR E L+ ++K +++ + G ++ D ++ A++L +
Sbjct: 465 DGDEMNLHAPQTEEARAEAETLMLVEKHILSPRFGGPIIGAIHDFISGAYILTSNYFTKD 524
Query: 514 HLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSK---------- 563
+ PD + + ++SGK++FS LP + +
Sbjct: 525 EATLILRSGGIKDELWEPDKVE-NGIPLYSGKKIFSKALPKGLNLRYKANICRKCDSCKK 583
Query: 564 -----DVY--ISGGKLISAEGSSWLRDY---EGNLFQYLIKRYRDKV-LDFLYAAQEVLC 612
D Y I G+L+ +G + Y G + ++K + + FL ++ ++
Sbjct: 584 ENCEYDAYVIIKDGELV--KGVIDKKGYGAESGLILHTIVKEFGPEAGRKFLDSSTKMAI 641
Query: 613 EWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK 672
L +RG T + D L + LRE + + + VD ++
Sbjct: 642 RTLMLRGFTTGIDDEDLPEEA-------------LREIEKVLDEAERKVDE----IIEQY 684
Query: 673 DSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGS 732
+ L G +S E+ R A + + +A +A +Y DN + M G+
Sbjct: 685 EKGELELLPG--MSPEESREAHIMRVLREARDKA----GEIAERYLGLDNHAVIMAITGA 738
Query: 733 KGNLLKLVQHSLCLGLQHSLAPLSFR------FPHELSCAAWNRLRAGDNTECAKSYIPS 786
+G +L + Q + C+G Q FR PH GD A +
Sbjct: 739 RGKILNITQMAACIGQQSVRGKRIFRGYKDRVLPH---------FEKGDLGARAHGF--- 786
Query: 787 AVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVR 844
V +S+ GL+P E F H++ R+ G + RRL+ ++DL + +D TVR
Sbjct: 787 --VRSSYKKGLSPTEFFFHAIGGREGLVDQAVRTAQSGYMQRRLINALQDLKSEFDFTVR 844
Query: 845 NAYGNQIVQFSYNIEGTSTPTGEIGD 870
++ G +VQF Y +G + G+
Sbjct: 845 DSRG-IVVQFRYGEDGVDPMLADRGE 869
>gi|157741532|gb|ABV69471.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 999
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 162/623 (26%), Positives = 274/623 (43%), Gaps = 115/623 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL G + R + DGDI+L NR P
Sbjct: 322 PQMHPGARYIIRENN----ERIDLRYHKNTADIALRTGWKVERHIMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q R L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNRPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D ++++ G+L+
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKPGQPPVERFAPAGDSGLFVADGQLMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGVIHTIFNEFGH------ETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV 601
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ F+ + + + + +E +L G ++ ++E + +
Sbjct: 602 EK-----------------IKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVA 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A D A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGAR---------DQAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ + ++ YDGTVR++ GN +VQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-VVQFIYGEDGLD- 799
Query: 864 PTGEIGDQPVGSLSACAISEAAY 886
I Q V A+S+AA+
Sbjct: 800 -GAHIESQRV---DVIAMSDAAF 818
>gi|397135838|gb|AFO11414.1| RNA polymerase I, partial [Naumovozyma dairenensis]
Length = 871
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 172/638 (26%), Positives = 284/638 (44%), Gaps = 70/638 (10%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R +TD D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L L ++ + + P + P I
Sbjct: 324 IVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDEVLNMLYWVPDWDGVIPTPAIIKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + + G + + G L
Sbjct: 384 LWSGKQVLSIAIPRGIHLQRFDEGTTLLSPKDNGMLVVDGQIIFGVVDKKTVGSSNGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + + L+ Q+V+ WL G + + D +A S ++I + I R
Sbjct: 444 HVVTREKGPTICAKLFGNIQKVVNFWLLHNGFSTGIGDT-IADGSTIKEI-TETIADAKR 501
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+ +D Q + L++AK + R S+E L++A A +
Sbjct: 502 KVEDVTKEAQ-------SNLLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEM 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
++ +L N++ M AGSKG+ + + Q S C+G Q R +
Sbjct: 549 NLNDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGK---RIGYGFVDRTL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
RL+ + D+ YDGT RN+ GN ++QF Y +G I Q SL S+AA+
Sbjct: 653 RLVKALEDIMVHYDGTARNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIGGSDAAF 706
Query: 887 SALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLF 924
+ I L+ L+ ++LE GS+ + + SL
Sbjct: 707 EKRYR-IDLMNPKNALD-PSLLESGSEITGDVKLQSLL 742
>gi|327242125|gb|AEA40841.1| RNA polymerase II largest subunit [Tritrichomonas foetus]
Length = 1293
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 170/593 (28%), Positives = 263/593 (44%), Gaps = 95/593 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DP+I++ ++G+P ++A+ L E + N E L+ + I+ KG
Sbjct: 279 GKRVDFSARSVISPDPSIRIDQVGVPQEIAKILTFPEVVTPRNREELTKLVINGPEELKG 338
Query: 378 ELYVCR----KGGLVRIRRIDALELGD--IIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
Y+ K L A+ L D I+ R LTDGDIV+ NR PS+H S++
Sbjct: 339 ANYIITPQQMKIDLSHATERTAIHLDDLAIVERHLTDGDIVIFNRQPSLHKMSMMGHHAL 398
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
+LP S +N +P++ DFDGD ++ ++PQ AR E+ ++ + Q+I Q + +
Sbjct: 399 ILP-GSTFRLNLCVTTPYNADFDGDEMNLHVPQTQSARAEVKHIMLVPNQIITPQGNKPI 457
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR---FLSPD--IFKISKDSVWSGKQ 546
+ L QDSL A LL S L+ +M L M+ + L P I +K +WSGKQ
Sbjct: 458 IGLVQDSLLACRLLSLKSSFLNRNEMMNLMMWVRSKQNLVLPPPCIIHPGNKVFLWSGKQ 517
Query: 547 LFSMLLPP---DFEYT--------FPSKD--VYISGGKLISA-EGSSWLRDYEGNLFQYL 592
+FS+ LP DF P D + I G+L++ + E +L +
Sbjct: 518 VFSLFLPSINHDFVQKGAKEPGSWIPVDDTRIIIRDGQLLAGILDKDTVAKSEKSLAHVV 577
Query: 593 IKRYRDKVL--DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI--LMDEIFYGLR 648
I + DK L DFL Q V+ WL RG ++ L D +A+ + + + ++ ++
Sbjct: 578 INSW-DKNLARDFLSETQMVVNSWLESRGFSIGLID-AVATDKTNETVDQQIRDLESDVK 635
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV-- 706
E QL + M + S +E++ + L++A +DA
Sbjct: 636 EIISRTQKGQLTIQPGMTLIES----------------FEREVNTKLNKA-IDACGSTVQ 678
Query: 707 ----FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
FW NSL+ M KAGSKG+LL + Q +G Q+
Sbjct: 679 KSSRFW-------------NSLVQMVKAGSKGSLLNISQIIATVGQQN------------ 713
Query: 763 LSCAAWNRLRAGDNTECAKSYIPS-------AVVENSFLTGLNPLECFIHSVTSRDSSFS 815
R+R G + + FL GLNP E F H++ R+
Sbjct: 714 ---IEGKRIRFGFKNRTLPHFTKDDFGLESRGFCRHCFLEGLNPPEFFFHAMAGREGIID 770
Query: 816 D--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTG 866
G + RRL M C YDGTVRN+ N+++QF Y +G P G
Sbjct: 771 TACKTSDTGYIQRRLCKSMESHCVMYDGTVRNSL-NEVIQFIYGGDGLD-PVG 821
>gi|397779348|ref|YP_006543821.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
MS2]
gi|396937850|emb|CCJ35105.1| DNA-directed RNA polymerase subunit A' [Methanoculleus bourgensis
MS2]
Length = 882
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 205/881 (23%), Positives = 367/881 (41%), Gaps = 142/881 (16%)
Query: 49 LGLPNPTNECSSCGAKDRKA--CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI- 105
LG+ +P C +C D+KA C GHFG I+ ++H + I KLL C C +
Sbjct: 50 LGVIDPGLRCKTC---DQKAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCSRLL 106
Query: 106 --RKERQKGAGSSRKE------------QPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKT 151
+E +K G + + R+C +C + K++ + + +
Sbjct: 107 MTTEEVEKIVGPEESDLTVDVVSEKDVKKERICPHCGEQ--------QLKINFEKPTTFS 158
Query: 152 AIIVE----IDEKLSKKN-----KKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYL 202
+ VE ++ KL+ + +K+PDD + + + +P +L+ V +
Sbjct: 159 EVFVEDGRKVEHKLTPADIRARLEKIPDDDLRLMGVNP----DVARPEWTILTVLPVPPV 214
Query: 203 LKDVDPSI-REEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV 261
+ PSI E S+D K + N R E A + + + D W +
Sbjct: 215 T--MRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQDAGA-PQLIIEDLWELLQYHVT 271
Query: 262 DYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKR 321
Y L + V C +R S + + + G + + GKR
Sbjct: 272 TY------LDNEVAGC---------PPARHRSGRPLKTLSQRLKGKEG--RFRGSLSGKR 314
Query: 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK----- 376
+ R V++ DPN+ + E+GIP +A + + R+ +N E + + +
Sbjct: 315 VNFSARTVISPDPNLSIGEVGIPLAIANEMTVPVRITPFNIEEMRQYVLNGPVRPTIRSP 374
Query: 377 -GELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
G YV R R+R D LE G + R L DGDIVL NR PS+H S++A
Sbjct: 375 CGANYVIRPDNR-RMRLSDVNLETVMEMLEPGWTVERQLKDGDIVLFNRQPSLHRMSIMA 433
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
+ V+ +NP C P++ DFDGD ++ +IPQ AR E LV++ +++ ++
Sbjct: 434 HRIVVMD-GKTFRLNPAVCPPYNADFDGDEMNLHIPQTEEARAEAEILVSVQANILSPRT 492
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL----SPDIFKISKDSVWS 543
G ++ D ++ LL + H + + + H L PD + + +W+
Sbjct: 493 GGPIIGGIHDHISGIFLLTHR---MRHFRKEDVLYLTQHLDLDHLPEPDSVDSNGNLLWT 549
Query: 544 GKQLFSMLLPPDFEYTFPS---------------KDVYIS--GGKLISAE-GSSWLRDYE 585
KQ+FS++LP + F + D Y+ G+L++ + ++
Sbjct: 550 NKQVFSLILPGELNMIFRASSCQNCETCRREMCENDAYVRIIDGQLVTGTIDKKAIGAFD 609
Query: 586 GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G + +I++Y + F+ ++ + ++G + + D L + +DE+
Sbjct: 610 GQILHRIIRQYGMKRAARFIDDVTKLSIRGIMLQGFSFGIDDEDLTKTEYGQ---IDEVL 666
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQ-GEHLSYEKQRSAALSQASVDAF 703
G D ++ + + M + E T +Q + L + R+
Sbjct: 667 NG--AVSDVERRIKIFKEGQLE-PMPGRTLEETLEMQIMQVLGKARDRTG---------- 713
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+A ++ DNS + M +G++G++L L Q + CLG Q R +
Sbjct: 714 --------EIAGRHLGMDNSAVVMAVSGARGSMLNLTQMAGCLGQQSVRGERIMRGYEDR 765
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DL 820
+ + R G A+++ + NS+ +GL+P E F H++ R+ D A
Sbjct: 766 TLPHFRRNELG-----AEAH---GFIANSYKSGLSPTEFFFHAIGGRE-GLVDTAVRTSQ 816
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G L RR++ ++DL AYDGTVR G +I+QF Y +GT
Sbjct: 817 SGYLQRRMINALQDLKVAYDGTVRTT-GGRIIQFRYGEDGT 856
>gi|322511128|gb|ADX06441.1| putative DNA-dependent RNA polymerase II [Organic Lake
phycodnavirus 2]
Length = 1478
Score = 177 bits (448), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 148/571 (25%), Positives = 264/571 (46%), Gaps = 71/571 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--- 369
++ ++GKR D R V+T DP + + E+G+P ++A + +N N L I
Sbjct: 316 VRGNLMGKRVDFSARSVITPDPELSIAELGVPLKIAMNITKPIYVNDENKNYLLYLIKNG 375
Query: 370 -----SFRLLEKGELYVCRKGGLVRIRRIDALEL----GDIIYRPLTDGDIVLINRPPSI 420
++LEK + G + +R +D + GD ++R + DGD VL NR P++
Sbjct: 376 PDTYPGAKILEK------KNGENISLRYVDREHIMIYEGDKVHRHMLDGDYVLFNRQPTL 429
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++A VKVL +N P++ DFDGD ++ ++PQ A +EL L A+
Sbjct: 430 HRMSMMAHIVKVLNKGDTFRMNVADTKPYNADFDGDEMNMHMPQNDEAEMELKYLAAIPY 489
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPD--IFKISK 538
Q+++ + +++ + QDSL ++LL + +++ S + L + + PD IFK
Sbjct: 490 QIVSPANNNSIIGIFQDSLLGSYLLTKPNIIFSRKEAMNLIA----KTIQPDLSIFKDKS 545
Query: 539 DSVWSGKQLFSMLLP-------PDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGN-LFQ 590
+ ++ +L S +LP D E T S ++I G ++S + + G L Q
Sbjct: 546 KNTFTSHELISTILPNISLNYKKDDERTDSSNHIHIQNGTMMSGQIDKGVYGKAGKGLIQ 605
Query: 591 YLIKRYRD-KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+ Y FL Q ++ E++ G +V +SDL +A+ +R + L +
Sbjct: 606 RIYNDYSPLHCQYFLDDIQAIVTEYMKTTGFSVGMSDL-IATDDTTRNVKT----IILEK 660
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
N ++D + K S + +E + + L++AS ++
Sbjct: 661 KNKVAN----LIDDIQQGIFVNKSGLSNKEY------FESEVNNILNEASKES------- 703
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN 769
+++ K+ N + + GSKGN L + Q CLG Q+ R P+ +
Sbjct: 704 -GDISMKHLDPSNRFVTIITCGSKGNELNMSQMISCLGQQNVENK---RIPYSFTNRTLP 759
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR----DSSFSDNADLPGTLT 825
+ D+ ++ + VE+SF+ GL P E F H++ R D++ + G +
Sbjct: 760 HYQQFDDNPVSRGF-----VESSFIEGLRPEELFFHAIGGRIGLIDTAVKTST--TGYIQ 812
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
RRL+ + D+ YD T+RN N+I+QFSY
Sbjct: 813 RRLIKGLEDIQVCYDRTIRNN-KNKIIQFSY 842
Score = 48.1 bits (113), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 1048 NFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVS 1107
N+K ++ ++ + L + V++G +I+KV++ +K ++D G LY +
Sbjct: 1221 NYKGEDDNIYLVKSFQEKLLNQIVLRGINKIQKVNLREINKYM---NYD---GSLYTKNK 1274
Query: 1108 MSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAIS 1167
+ + S + ++ +D ID+ R++ +NI GI+A + ++ +
Sbjct: 1275 IYVLDTVGSNLAEVLT-----LDFIDYKRTYSNNISEMLEVLGIEAARKCLFNEIKEVME 1329
Query: 1168 DTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKA 1227
G I H+ ++ + ++ + V + G+ ++ P +A F F++A
Sbjct: 1330 FGGTYINHHHISLLCDRMTTNHKMVSIFRHGI-----NNDDIGPIAKASFEETTEMFLRA 1384
Query: 1228 AKAGAVDNLQGSVDALGWGKVPSVGT 1253
AK G +D ++G + G+ GT
Sbjct: 1385 AKHGELDQMRGVSANVMCGQDGYYGT 1410
Score = 42.4 bits (98), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGA----------VSEVTNPRLGLPNPTNECSSCG 62
PS + GI I + E + SV EI + + + +PR+G+ +P C + G
Sbjct: 7 PSSKIIGIQFSILSPDEIVRNSVAEITSKDTYNGMKPKIGGLFDPRMGVLDPGMICPTDG 66
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
++ C G+FG I + + + + I K+L IC KC
Sbjct: 67 -QNYIQCPGYFGHIVLAKPVFYIQYFNVIQKILKCICFKC 105
>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
dendrobatidis]
Length = 985
Score = 177 bits (448), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 152/580 (26%), Positives = 252/580 (43%), Gaps = 79/580 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + ++G+P +A L E + +N + L + E
Sbjct: 254 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEH 313
Query: 377 -GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G R+D L+ G + R L D D ++ NR PS+H S+
Sbjct: 314 PGAKYVIRDNG----ERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPSLHKMSM 369
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VK++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ L + Q+++
Sbjct: 370 MGHRVKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSP 428
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR---FLSPDIFKISKDSVW 542
Q ++ + QD+L + L M L M+ P +P I K +W
Sbjct: 429 QKNAPVMGIVQDTLCGIRKFSKRDTFLKRDLMMNLLMWVPDWDGIIPTPAILK--PIPLW 486
Query: 543 SGKQLFSMLLP-----------PDFEYTFPS---KDVYISGGKLI------SAEGSSWLR 582
+ KQ+ S++LP PD E T S V I G+L+ GSS
Sbjct: 487 TAKQIISLILPKINLVGFHAAHPDNEKTDISPGDTKVLIEDGELLMGILCKRTVGSS--- 543
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G + + + D + F Q V+ WL G ++ + D + + + D
Sbjct: 544 -ANGIIHTSMNELGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTIADRQTM--ETINDT 600
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + RE Q+ D+ + L +S SL + L+ + + ++ S+
Sbjct: 601 IAHAKREVNKI--IQKAQTDT-LEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKE 657
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ N++ M +GSKG+ + + Q + C+G Q+ R P
Sbjct: 658 Y------------------NNVKQMVVSGSKGSFINISQMTACVGQQNVEGK---RIPFG 696
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D++ ++ + VENS+L GL P E F H++ R+
Sbjct: 697 FKDRTLPHFTRDDHSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 751
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRNA G+ IVQF+Y +G
Sbjct: 752 TGYIQRRLVKALEDVMAKYDGTVRNALGD-IVQFTYGEDG 790
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 177 bits (448), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 154/575 (26%), Positives = 255/575 (44%), Gaps = 73/575 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N +L+ + E
Sbjct: 354 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEH 413
Query: 376 KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G L RR L+L G + R L DGD ++ NR PS+H S++
Sbjct: 414 PGAKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 474 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNG 532
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLF 548
L+ + QD+L A+ L V L+ ++ + ++ P + P + W+GKQ+
Sbjct: 533 PLMGIVQDTLAGAYKLCRRDVFLTKEEVMNVMLWVPEWDGIIPIPAILKPRPRWTGKQII 592
Query: 549 SMLLPP----------DFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRD 598
SM++P D E K + I G++I + + +L Y +
Sbjct: 593 SMVIPKIINLKNLDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIIHLC--YNE 650
Query: 599 ----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMDEIFYGLREAQDT 653
+DFL Q V+ WL G ++ + D + + ++ + +D+ ++ D
Sbjct: 651 LGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKMLTDQ 710
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
+L MN ++E + S AL+ A A +++L
Sbjct: 711 ATNNELEPLPGMNI----------------RETFENKVSKALNTARDKAGTTTEGSLKDL 754
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELSCAA 767
N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 755 --------NNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH------ 800
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + A+ + VENS+L GL P E F H++ R+ G +
Sbjct: 801 ---FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQ 852
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D YDGTVRN+ G+ I+QF Y +G
Sbjct: 853 RRLVKALEDSAAQYDGTVRNSLGD-IIQFVYGEDG 886
Score = 45.1 bits (105), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C ++ C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSVDRQFKCKTC-TENMSECPGHFGHIELARPVYHPGFIKRVKKILEIVCHNCS 113
Query: 104 TIRKER--QKGAGSSRKEQPRV 123
+ +R ++ A + + P+V
Sbjct: 114 KVLADRNDKEFAAAMKIRDPKV 135
>gi|113957504|gb|ABI49116.1| RNA polymerase II largest subunit [Lobariella pallida]
Length = 1002
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 260/578 (44%), Gaps = 80/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + +
Sbjct: 261 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNDH 320
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD + NR + H S+
Sbjct: 321 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIIDGDYIXFNRHHAXHKESM 376
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 377 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 435
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ QD+L + + V L+ Q+ + ++ P P I K W
Sbjct: 436 QRNGPLMGTVQDTLCGIYKICRRDVFLNKEQVMNILLWVPDWDGVLPQPAILKPRPK--W 493
Query: 543 SGKQLFSMLLPPDFEYTFPSKD---------VYISGGKLISAE-GSSWLRDYEGNLFQYL 592
+GKQ+ S+++PP T S + +++SGG+L+ + G + +
Sbjct: 494 TGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSGGELMYGLFNKKSVGATSGGIIHII 553
Query: 593 I-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ + ++F AQ V+ WL G ++ + D ++ R +
Sbjct: 554 FNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIQR-------------IE 600
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ N Q+ V + + + D E + ++E + S AL++A DA
Sbjct: 601 NAVNQQKEDV-AEITRSATENDLEPLPGMNVRE-TFESKVSKALNKARDDA--------- 649
Query: 712 NLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELS 764
+ G KD N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 650 GTVTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH--- 706
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 707 ------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 755
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 756 YIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 792
>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
Length = 1138
Score = 176 bits (447), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 219/952 (23%), Positives = 393/952 (41%), Gaps = 175/952 (18%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAV------------SEVTNPRLGLPNPTNECSSCGA 63
++ + LGI + E ++SV E G + + +PR G+ +C +C
Sbjct: 14 LVKKVQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQGVVIRKAKCQTCDG 73
Query: 64 KDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI----RKERQKGAGSSRKE 119
+ C GHFG I + H F ++L +C C + + K K+
Sbjct: 74 TINE-CPGHFGHINLAKPVYHVGFFEKTIEILRCVCYYCSKLLVNPNNPKFKEILVKSKD 132
Query: 120 QP--------------RVCKYCVRNPAQWYPRMR----FKLSSK----DLSGKTAIIVEI 157
QP +C+ ++ P++R FK++ + D + IV
Sbjct: 133 QPLKCMAHVYDLCKGINICEVGNGGCGRYLPKIRRLKGFKINGEWKHVDEDSQEKKIVLT 192
Query: 158 DEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILS 217
E++ + K++ D+ + D + +P+ +++C V I + I
Sbjct: 193 AERVWEIFKRISDEDCAILGMDPK----YARPDWMIVTCLPVPPPAVRPAQIIGMDQI-E 247
Query: 218 KDAPFLKCFPVTPNNHRVTEVPHA--FSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQ 275
D V NN + V S + K+ H+ M+D + + +
Sbjct: 248 NDLTMKLADIVRANNKLLGAVQSGEILSGKTKML----QLHIASMMDSKSTLLPAYY--- 300
Query: 276 DCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPN 335
+ L S KD E R + I+ ++GKR D R V+T DPN
Sbjct: 301 -----HESTLPTQSIKDRLEGRDGR------------IRGNLMGKRVDFAARTVITPDPN 343
Query: 336 IKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG-------ELYVCRKGGLV 388
+++ ++GIP +A+ + ER+ +N E++ L+++G + + +K G
Sbjct: 344 LRIDQVGIPRSIAQNMTFPERVAPFNIEKMQ-----ELVQRGNSQYPGAKFCIIKKNG-- 396
Query: 389 RIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSV 438
RID LE GDI+ R + DGD+V++NR PS+ ++ VKVLP S+
Sbjct: 397 --DRIDLRFPSKSPDLRLECGDIVERHICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTF 454
Query: 439 VTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498
+NP + ++ +FDGD ++ ++PQ++ R E+ L+ + +I Q+ + ++ + QD+
Sbjct: 455 C-LNPSVATAYNANFDGDEMNLHVPQSMETRSEVESLLVSSRLIITPQASKPVMGIVQDT 513
Query: 499 LTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP-- 553
L A+ L + V L QM L MF P + P I K W+ + S+++P
Sbjct: 514 LVGAYKLTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAILKPRPQ--WTAA-VHSIIIPGN 570
Query: 554 ----------PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGNLFQYLIKR 595
PD E P K V I G+L+ L +L +
Sbjct: 571 VNMMRTHSTHPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFME 630
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V Y Q V+ WL G ++ + D C + + + +E
Sbjct: 631 LGHEVCGRFYGNIQTVINNWLLYEGHSIGIEDTLA---DCQTYMGIQDTIQKAKE----- 682
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ +++ SH + L + ++ + + L+ +Q+++AL++ S+ +
Sbjct: 683 DVIEIIQKSHNDELEPTPGNTLRQTFENQVNRILNNAQQQASALAKNSLTEY-------- 734
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSC 765
N+L AM AGS G+ + Q C+G Q+ P FR PH +
Sbjct: 735 ----------NNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHFIK- 783
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLT 825
DN ++ + VENS+LTGL P E + H++ R+ + A +
Sbjct: 784 --------DDNGPESRGF-----VENSYLTGLTPSEFYFHAMAGRELLIYE-ARTETDII 829
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
R+L+ M + YDGTVRN+ G +++QF Y +G + + E+ P +LS
Sbjct: 830 RQLVKGMESVMVHYDGTVRNSAG-RLLQFCYGEDGLAAESVELQKMPTVNLS 880
>gi|397135856|gb|AFO11423.1| RNA polymerase I, partial [Saturnispora dispora]
Length = 870
Score = 176 bits (447), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 151/574 (26%), Positives = 262/574 (45%), Gaps = 73/574 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPRSIARTLTYPEIVTPYNIQKLTEMVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDNG----DRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MCHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQIAAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMCYWIPEWDGVIPPPCILKPKPLWSG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ S+ +P D P S + ++G + + + G L ++
Sbjct: 388 KQMMSLCIPKGIFLQRLDGSLLSPKDSGMLIMNGEIMFGVVNKATVGSSAGGLIHTTMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ ++ Q+V+ WL G ++ + D + M I ++EA++
Sbjct: 448 KGPTICARMFGNIQKVINYWLLHNGFSIGIGDAIADPET------MKTITETIKEAKEKV 501
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
QL++ L+ + + R S+E++ S L++A A K ++N
Sbjct: 502 ---QLVIKDAQQNLLEPEPGMTVRE------SFEQKVSKILNEARDSAGKSAETSLKN-- 550
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAW 768
N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 551 ------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPH------- 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 --FTKDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 650
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RL+ + D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 651 RLLKALEDIMVHYDGTTRNSLGD-IIQFLYGEDG 683
>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas
paramecium]
Length = 1452
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 162/587 (27%), Positives = 267/587 (45%), Gaps = 97/587 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI L+EIGIP VA L E + ++N++ + +
Sbjct: 316 IRGNLMGKRVDFSARTVITPDPNILLEEIGIPWNVALNLTYPEIVTNFNYQYMK-----Q 370
Query: 373 LLEKGEL------YVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSI 420
L++ G YV + G L ++++ LE+G + R L DGD++L NR PS+
Sbjct: 371 LVQNGPTRYPGAKYVIKNDGTRLDLRYVKKLSNVYLEIGYQVERHLRDGDVILFNRQPSL 430
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S+++ VK++ S+ +N +P++ DFDGD ++ ++PQ + + EL L+ + K
Sbjct: 431 HKMSMMSHIVKIMDYSTF-RMNLSATTPYNADFDGDEMNLHLPQTLESTSELLNLLTVSK 489
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH----------RFLS 530
+++QQS + ++ + QDSL A LL + V + M L M H F+
Sbjct: 490 CILSQQSNKPVIGIVQDSLIGAFLLTQKDVFMD---MCTLNMLLIHIDGCNSIPFPTFIK 546
Query: 531 PDIFKISKDSVWSGKQLFSMLLP-----------PDFEYTFPSKD-VYISGGKLI----- 573
P+I +W+GKQ+FS++LP D E F + V I G+LI
Sbjct: 547 PNI-------LWTGKQVFSLILPSVNLTRNCINYSDTETNFSQDNKVIILNGQLICGVID 599
Query: 574 -SAEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS 631
+ GSS G + K Y +K F+ Q ++ WL + G +V + D
Sbjct: 600 KRSAGSS-----SGGIIHVCWKEYGPEKTAFFISQFQWMINHWLLLCGFSVGVED----- 649
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQR 691
+ + KI+ ++ +++A++ + L S + +E Q
Sbjct: 650 -TIANKIINLKVVSIIKKAKNEVRY----------ILRKKVTSAEIYPDKNSDEIFECQI 698
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
+ L+ A A ++ K S N++ M +GSKGN + + Q C+G Q+
Sbjct: 699 NKILNTARDQA--------GSIVQKLLSDKNNIKKMVISGSKGNFINISQIIACVGQQNV 750
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
R DN K + V+NS+ +GLNP E F H++ R+
Sbjct: 751 NGK---RIDSAFGSRCLPHFLFDDNGPETKGF-----VQNSYSSGLNPDEFFFHAMGGRE 802
Query: 812 SSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
G + RRL M D+ YD TVRNA +I++F Y
Sbjct: 803 GLIDTAIKTSETGYIQRRLSKIMEDIVVEYDLTVRNA-QKEILEFFY 848
Score = 47.0 bits (110), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D TR+ ++I +GI+A + + +++ IS G + H+ ++A+ ++ G
Sbjct: 1324 NIVDPTRTVSNDILETFKTFGIEAARKILIKEIKNLISFDGSYVNFRHIFLLADIMTHGG 1383
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ + + G++ P ++ F F ++A G DN++G + G +
Sbjct: 1384 KLMSITRHGIS-----KIEIGPIAKSSFEETVDIFYQSAVFGIYDNIKGVSANIMVGNLL 1438
Query: 1250 SVGTG 1254
SVGTG
Sbjct: 1439 SVGTG 1443
>gi|157741626|gb|ABV69518.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 165/632 (26%), Positives = 277/632 (43%), Gaps = 102/632 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGD++L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMD 641
+ + F AQ V+ WL G ++ + D + + K+ +D
Sbjct: 550 GSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKLEVD 609
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
R+ + Q+ V +E +L G ++ ++E + SAAL+ A
Sbjct: 610 ------RKKAEVERITQMAV------------AEDLEALPGMNVRETFESKVSAALNGAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 652 DEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G I
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD--GAHIEK 805
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLL 902
Q V A+S+AA+ + + L+E+ L+
Sbjct: 806 QRV---DVIAMSDAAFEKQFR-VDLMESKKLV 833
>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 165/632 (26%), Positives = 277/632 (43%), Gaps = 102/632 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGD++L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMD 641
+ + F AQ V+ WL G ++ + D + + K+ +D
Sbjct: 550 GSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKLEVD 609
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
R+ + Q+ V +E +L G ++ ++E + SAAL+ A
Sbjct: 610 ------RKKAEVERITQMAV------------AEDLEALPGMNVREAFESKVSAALNGAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 652 DEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G I
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD--GAHIEK 805
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLL 902
Q V A+S+AA+ + + L+E+ L+
Sbjct: 806 QRV---DVIAMSDAAFEKQFR-VDLMESKKLV 833
>gi|226876154|gb|ACO89398.1| RNA polymerase II largest subunit, partial [Capronia semiimmersa]
Length = 993
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 146/578 (25%), Positives = 253/578 (43%), Gaps = 73/578 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L ER+ N ++L ++
Sbjct: 260 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPERVTQKNIDKLKRLVANG 319
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G I+ R + DGD++L NR
Sbjct: 320 PNEHPGARYVIRDSG----ERIDLRHHKNASEMNLQHGWIVERHIQDGDVILFNR----Q 371
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
P V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL L +
Sbjct: 372 PXXXXXXRVRVMPYSTF-RLNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCMVPLN 430
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + L+ Q+ + ++ P + P I
Sbjct: 431 IVSPQRNAPLMGIIQDTLCGIYKICRRDIFLTREQVMNIMLWVPDWDGVIPQPAIIKPTP 490
Query: 541 VWSGKQLFSMLLPPDFEYT----------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
W+GKQ+ SM+LPP P+ D + + G + ++ G
Sbjct: 491 RWTGKQMISMVLPPALNLERLDAKGEDPYVPANDTGLIVLEGNLMFGVLSKKFVGTGAGG 550
Query: 588 LFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + + + L F AQ V+ WL G ++ + D + +
Sbjct: 551 IIHTIYNEFGWETALSFFNGAQTVVNYWLLHNGFSIGIGDTVPDPDTVQK---------- 600
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFK 704
++ A DT + + L ++E G ++ ++E + AL+QA A
Sbjct: 601 IQNAVDTKK-------AEVEDLQKKAEAEDLEPSPGMNVRQTFESKAMNALNQARDQAGA 653
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
+++L N+ + M +AGSKG+ + + Q + +G Q A R P
Sbjct: 654 ATEDSLKDL--------NNAITMARAGSKGSTINIAQMTAIVGQQ---AVEGKRIPFGFK 702
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
+ D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 703 YRSLPHFTKDDYSAPSRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 757
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 758 YIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYGEDG 794
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 159/624 (25%), Positives = 276/624 (44%), Gaps = 90/624 (14%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ L E+G+P +A + E + +N ERL R
Sbjct: 343 IRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIERLQ-----R 397
Query: 373 LL---------EKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVL 413
L+ E G Y+ R+ G +R+D LE G + R + +GD+VL
Sbjct: 398 LVDNGPHPPPGETGARYIIREDG----QRLDLRFLKKASEKRLEYGYKVERHMVNGDVVL 453
Query: 414 INRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELT 473
NR PS+H S++ V+++P S+ +N P++ DFDGD ++ ++PQ+ + E+
Sbjct: 454 FNRQPSLHKMSIMGHRVRIMPYSTF-RLNLSVTPPYNADFDGDEMNMHLPQSYETKAEVK 512
Query: 474 ELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLS 530
EL+ + K +++ Q+ + ++++ QD+L L+ + + + M+ +
Sbjct: 513 ELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFIPKDVFMNIIMWLEDWDGKIPK 572
Query: 531 PDIFKISKDSVWSGKQLFSMLLPP--------------DFEYTFPSKDVYISGGKLISAE 576
P I K +W+GKQ+FSM+LP D ++ V I G+L++
Sbjct: 573 PAILK--PQPLWTGKQVFSMMLPKVNLLRTSAWARDADDVTFSVDDTGVRIEQGELLTGT 630
Query: 577 -GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE-WLSVRGMTVSLSDLYLASHSC 634
+ G L + + L + + L WL G TV ++D
Sbjct: 631 LCKKTMGSGGGGLIHVTWEEWGPIAARGLISQTQTLVNYWLLHHGFTVGIAD-------- 682
Query: 635 SRKILMDEIFYGLRE--AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
I DE + + + + ++++ + N L + + ++Q S+E++ +
Sbjct: 683 --TIADDETMFTINNTITKAKADVKEVIKQAQNNEL----ELQPGMTMQQ---SFEQKVN 733
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSL 752
L++A +A N A N++ M AGSKG+ L + Q C+G Q+
Sbjct: 734 QILNKARDNA--------GNSAQNSLKDTNNVKMMVTAGSKGSFLNISQMIACVGQQNVE 785
Query: 753 APLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
R P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 786 GK---RIPYGFKGRTLPHFSKDDFGPESRGF-----VENSYLRGLTPQEFFFHAMGGREG 837
Query: 813 SFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G I
Sbjct: 838 LIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGD-VIQFLYGEDGMDATM--IES 894
Query: 871 QPVGSLSACAISEAAYSALDQPIS 894
Q + +L A AA +D +S
Sbjct: 895 QVLDTLRLGAKEFAAVFQIDPDVS 918
>gi|324500904|gb|ADY40409.1| DNA-directed RNA polymerase III subunit RPC1 [Ascaris suum]
Length = 1405
Score = 176 bits (446), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 161/604 (26%), Positives = 264/604 (43%), Gaps = 91/604 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+++ ++G+P VA+ L E +N N ER+ + I+ + G
Sbjct: 355 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAKILTFPEIVNESNMERMRKLVINGDDIHPG 414
Query: 378 ELYVC-RKGGLVRIRRID-------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ R G R R L++GDI+ R L D D+VL NR PS+H S+++
Sbjct: 415 ANHIVERLTGNKRFLRYGNREQTAAQLKVGDIVERHLDDNDVVLFNRQPSLHKISIMSHR 474
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K++P N C+P++ DFDGD ++ ++PQ AR E + L+ + LI +SG
Sbjct: 475 AKIVP-GRTFRFNECACTPYNADFDGDEMNLHVPQTYEARAEASLLMGVKSNLITPRSGE 533
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS--------- 540
L++ QD +T +L+ ++ HRF S I +K
Sbjct: 534 PLIAAIQDFITGGYLMTHKDSFFPRSEV--------HRFASAIIDANAKKQSRIRIPPPA 585
Query: 541 ------VWSGKQLFSMLLPPDFE-------------YT----FPSKDVY--ISGGKLISA 575
+W+GKQL +++ PD + YT F KD Y I LI
Sbjct: 586 IRKPVELWTGKQLVELIIRPDVDSKVSLNLTTKNKSYTGNEEFCVKDSYVIIRNSVLICG 645
Query: 576 EGSSWL--RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASH 632
L + N+F L++ + D +D ++ + +L+ RG ++ + D+
Sbjct: 646 VLDKALLGSGSKTNIFYILLRDFGEDAAVDAMWRLARMAPVYLTNRGFSIGIGDVRPGEG 705
Query: 633 SCSRKILMDEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQR 691
L+ E L C+ + + + H+ + E+ +L + LS +
Sbjct: 706 ------LLKEKAALLAAGYKKCDEYITSLKEGHLKAQPGCTEHETLEALILKELSAIRDH 759
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
+ QA ++NL S+ N+ L M GSKG+ + + Q C+G Q
Sbjct: 760 AG---QAC----------LRNL-----SRHNAPLTMAVCGSKGSFINISQMIACVGQQ-- 799
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
A R P + T AK + VENSF +GL P E F H++ R+
Sbjct: 800 -AISGHRPPDGFEDRSLPHFERRQKTPAAKGF-----VENSFYSGLTPTEFFFHTMAGRE 853
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ + DLC YDGTVR++ G+ I++F++ +G E
Sbjct: 854 GLVDTAVKTAETGYMQRRLVKCLEDLCVNYDGTVRSSVGD-IIEFTFGEDGLDPALMEAK 912
Query: 870 DQPV 873
D V
Sbjct: 913 DGKV 916
Score = 42.0 bits (97), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID R++ +N + GI+A ++ + S + G + H++++A+ ++ GE
Sbjct: 1258 IDGRRTYFNNALTVAEVLGIEAARTSIISEILSTMESHGIGLDQRHVMLLADVMTYRGEV 1317
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ GL ++ S + A F +AA D + G + + G ++
Sbjct: 1318 LGITRNGLVKMKE-----SVLLLASFEKTTDHLYEAAFFSQEDKIAGVSECIIMGTPMTI 1372
Query: 1252 GTGGHFDIIYS 1262
GT G F ++Y+
Sbjct: 1373 GT-GLFKVLYN 1382
>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1466
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 160/614 (26%), Positives = 269/614 (43%), Gaps = 109/614 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V+ DPN+++ E+ +P +VA +L ER+ +N + + I+ L G
Sbjct: 362 GKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPG 421
Query: 378 ELYVCRK---GGLVRI------------RRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ RK G VRI R L++GDI++R + DGDIVL NR PS+H
Sbjct: 422 ANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHK 481
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ V+V P + +N C+P++ DFDGD ++ ++PQ AR E EL+++ K L
Sbjct: 482 LSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNL 540
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKIS 537
+ ++G +++ QD +TAA+LL Q Q+ + L P I+K
Sbjct: 541 VTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPTIWKPV 600
Query: 538 KDSVWSGKQLFSMLLPPDFEYTF-------------PSK------DVYISGGKLISAEGS 578
+ +W+GKQ+F++L+ P+ E P+K D+ + G L+
Sbjct: 601 R--LWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLVIQNSE 658
Query: 579 SWLRDYEGN---------LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLY 628
++ N +F +++ Y ++ + ++ WL+ G ++ ++D+
Sbjct: 659 IMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVI 718
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYE 688
IL + +A D C+ + +D ++ K + + E
Sbjct: 719 PGP------ILHASKDARVEKAYDECD---VFID------LAKKGKLENAPGCDQEATLE 763
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ S LS K ++ S+ N+ L M GSKG+++ + Q C+G
Sbjct: 764 SKISKTLSDVREAVGKICMQEL--------SRHNAPLIMATCGSKGSVINVAQMVACVGQ 815
Query: 749 QHSLAPLSFRFPHELSCAAWNRLRAGDNTEC-------AKSYIPSAVVENSFLTGLNPLE 801
Q +R+R G +K+ V NSF +GL P E
Sbjct: 816 Q---------------IIGGSRVRNGFQDRSLPHFRKKSKNPPSKGFVRNSFFSGLTPPE 860
Query: 802 CFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN-- 857
H+++ R+ G + RRLM + DLCT YD +VRN+ G IVQF Y
Sbjct: 861 FLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGG-IVQFQYGDD 919
Query: 858 ------IEGTSTPT 865
+EG +TP
Sbjct: 920 MLDPACLEGDATPV 933
Score = 43.5 bits (101), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G +C++CG +D + C GH+G+IK + H + +L+ IC C +
Sbjct: 69 RMGPNEKGKKCATCG-EDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTCARV 125
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 155/579 (26%), Positives = 261/579 (45%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + +
Sbjct: 348 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKTGPNDH 407
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ NR PS+H S+
Sbjct: 408 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESM 463
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 464 MGHRVRVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSP 522
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V L+ + + ++ P P I K W
Sbjct: 523 QRNGPLMGIVQDTLCGIYKICRRDVFLTKELVMNILLWVPDWDGVIPQPAILKPRPK--W 580
Query: 543 SGKQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLI 593
+GKQ+ S+++PP E P D + +SGG+L+ + N ++I
Sbjct: 581 TGKQIISLIIPPGLNLFRSSSEGPSPLNDDGLQVSGGELMYGLFNKKSVGATSNGVVHII 640
Query: 594 --KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ D + F Q V+ WL G ++ + D + D + EA
Sbjct: 641 FNEKGPDAAMSFFNGCQTVVNYWLLHNGFSIGIGD-----------TIPDRVTIQAIEA- 688
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
N Q+ V SA ++E L G ++ ++E + AL++A DA
Sbjct: 689 -AVNEQKAEV---AEITRSATENE-LEPLPGMNVRETFESKVQKALNKARDDA------- 736
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF---PHEL 763
+ K N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 737 -GTVTEKSLKDTNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH-- 793
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 794 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 841
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 842 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 879
Score = 47.0 bits (110), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + +C +C ++ C GHFG I+ + H F++ I KLL ++C C
Sbjct: 55 LADPRLGSIDRAIKCGTCD-ENMSECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCG 113
Query: 104 TI 105
I
Sbjct: 114 KI 115
>gi|123979336|gb|ABM81493.1| RNA polymerase II largest subunit [Buellia dialyta]
Length = 994
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 151/594 (25%), Positives = 272/594 (45%), Gaps = 92/594 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A + E + +N +L +
Sbjct: 251 VRGNLMGKRVDFSARTVITGDPNLCLDEVGVPRSIARTMTYPETVTPYNIHKLHQLVKNG 310
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID +L+ G + R + DGD ++ NR PS+H
Sbjct: 311 PNEHPGARYVIRDSG----ERIDLRYHKRAGELSLQYGWKVERHIVDGDYIIFNRQPSLH 366
Query: 422 PHSLIA----------LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVE 471
S++ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E
Sbjct: 367 KESMMGQGXTRNLXWVXRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAE 425
Query: 472 LTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLS 530
+ +L + +++ Q L+ + QD+L + + V L+ Q+ + ++ P +
Sbjct: 426 VNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQYQVMNILLWVPDWDGII 485
Query: 531 PDIFKISKDSVWSGKQLFSMLLPPDF--------EYTF-PSKD--VYISGGKLISAEGSS 579
P + +W+GKQ+ S+++P E F PS D +YIS G+L+ +
Sbjct: 486 PQPAILKPTPMWTGKQIVSLIIPAGLNLVRPGEKENPFSPSDDGGLYISNGELMYGLLAK 545
Query: 580 WLRDYEGNLFQYLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ +++ ++ + ++F AQ V+ WL G ++ + D + R
Sbjct: 546 KIVGASSGGIIHIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRDTIKR- 604
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAA 694
+D N Q+ V ++ + +ES +L G ++ ++E + S A
Sbjct: 605 ------------IEDAVNQQKADVTE-----ITKEATESVLDTLPGMNVRETFESKVSKA 647
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---S 751
L++A DA ++++ N+ + M ++GSKG+ + + + + +G Q
Sbjct: 648 LNKARDDAGTATEQSLKDI--------NNAIQMARSGSKGSTINISRMTAVVGQQSVEGK 699
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + ++ + VENS+L GL P E F H++
Sbjct: 700 RIPFGFKYRTLPH---------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMA 745
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 746 GREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFIYGEDG 798
>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
equi]
Length = 1733
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 169/644 (26%), Positives = 280/644 (43%), Gaps = 97/644 (15%)
Query: 272 HLVQDCLKISKLHLDKSSRKDS-----AEVRQKKNIDISNSSGLRW----IKDVVLGKRN 322
H+VQ+ ++ + H+ D A R KK I S + L+ ++ ++GKR
Sbjct: 288 HIVQEMAQLLQFHITTLFDNDIPGMPIASTRSKKPIK-SIRARLKGKEGRLRGNLMGKRV 346
Query: 323 DDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYV 381
D R V+TGDPN+ + IG+P +A L SE + N+E L + + G Y+
Sbjct: 347 DFSARTVITGDPNLPIDTIGVPKSIAMTLTFSETVTPLNFESLRRRVEVGPHDWPGAKYI 406
Query: 382 CRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
R G L +++ L+L G + R + DGD +L NR PS+H S++ K+LP
Sbjct: 407 IRDDGTKFDLRHVKKASELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPY 466
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N +P++ DFDGD ++ ++ Q R E+ L+ + KQ+++ Q R ++ +
Sbjct: 467 STF-RLNLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIV 525
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLL 552
QDSL + L+ ++ L M+ P+ + P IF +W+GKQ+ +++L
Sbjct: 526 QDSLLGISKFTKRDCFLTKDELMNLLMWVPYWDGKLPQPCIFH--PQPLWTGKQVITVML 583
Query: 553 PPDFEYTFPS----KDVYISGGK---LISAEGSSWLRDYEGNLFQYLIKRY--------- 596
D + + +D IS GK S S + +L + KR
Sbjct: 584 TFDQSQSLTNINLMRDAGISRGKDNPYCSENDSKVIIRKNEHLCGVICKRTVGCSSGSLI 643
Query: 597 --------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
++ DFL Q+V+ W G TVS SD+ + + SR + E R
Sbjct: 644 HVLWHEAGPERCKDFLTTVQKVVNAWFVHNGFTVSCSDITASESTLSRVAEVLE-----R 698
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
++ L + ES + + L+ +++S ++ S+D
Sbjct: 699 SKKEVQRLVGLAQRGKLKCQPGKSLFESFEARVNKELNDAREQSGTIAAQSLD------- 751
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
+ N++LAM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 752 -----------ERNNILAMVNSGSKGSTINISQIIACVGQQNVEGKRIPFGFRDRSLPHF 800
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD--NA 818
+ Y P + V NS+L+GL P E F H++ R+
Sbjct: 801 IK----------------HDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKT 844
Query: 819 DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
G + RRL+ M D+ YD T RN G I+QF Y +G S
Sbjct: 845 SETGYVQRRLIKAMEDIMVQYDKTARNG-GGDILQFLYGEDGMS 887
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/350 (18%), Positives = 134/350 (38%), Gaps = 65/350 (18%)
Query: 940 ALEVKNHLECLMLSDIVSTSMIIYSPQTGSM--------------------KHFSPWICH 979
A +++ LE L +V++S +IY P+ + PW+
Sbjct: 1149 AKDMQTRLEYTTLDKVVASSQVIYDPKVSNTIVAKDREWVRDYYEFPDEDENRLGPWLLR 1208
Query: 980 FHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAF 1039
+ +IM L I D +Y++ SN + I +
Sbjct: 1209 IQLSNKIMTDKRLTMKEIGDQIYKE----------------FSNDEIDCIYTDDNSEELV 1252
Query: 1040 CVTVMIVENFKRTSIDL-----ETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKS 1094
+ N + + + E +Q ++ L ++G +I KV + + K K +++
Sbjct: 1253 LRIRIKYMNVEGEELAVREDEGEFLQRFMTQLLSNIKLRGIPQISKVYMREEAKTKYNET 1312
Query: 1095 HDDSFGELYLRVSMSGQCHITSLWSALMNDCH--QIMDM--IDWTRSHPDNIRSFCLAYG 1150
+ G+ S W + C+ ++ + +D+ R+ +++ +G
Sbjct: 1313 N--------------GRFERVSQWVLDTDGCNLEDVLPIPSVDYVRTISNDVSEIFHVFG 1358
Query: 1151 IDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSS 1210
I+A + L L + IS G + HL ++ + ++ G + + GL + +
Sbjct: 1359 IEAARRALLRELRAVISFDGSYVNYRHLSLLCDVMTQKGHIMSITRHGL-----NRTDRG 1413
Query: 1211 PFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260
P V+ F + + A+ G VD L+G + + G++ GTG FDI+
Sbjct: 1414 PLVKCSFEETLETLLDASIFGEVDQLKGITENVIMGQLCPYGTGC-FDIM 1462
>gi|296090333|emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 135/514 (26%), Positives = 241/514 (46%), Gaps = 25/514 (4%)
Query: 787 AVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVR 844
++ + F GL+P E +HS+++R+ + L PGTL + LM +RD+ YDGTVR
Sbjct: 803 GLIRSCFFHGLDPYEEMVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVR 862
Query: 845 NAYGNQIVQFSYNIEGTSTPTGEI-GDQPVGSLSACAISEAAYSA-LDQPISLLETSPLL 902
N N I+QF Y ++ + P +PVG L+A A+S AY A LD S + L+
Sbjct: 863 NVCSNSIIQFEYGVKARTKPQHFFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWELM 922
Query: 903 NLKNVLECGSKKSN--ADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSM 960
K +L C N D+ + L+L++ R++ E A VKN L+ L D M
Sbjct: 923 --KEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKKASLKDTAVEFM 980
Query: 961 IIYSPQ---TGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKIS-- 1015
I Y Q +GS + + + H H+ K +++ + + + R + +
Sbjct: 981 IEYVKQHAVSGSSEPGTGLVGHIHLNKLLLQDLNVSMQEVCQKCEETINSFRKKKNVGPF 1040
Query: 1016 VPDMLISNKDCSSI--NMQKECNDAFCVTVMIVENFKRTSID--LETIQMWVMPFLLKTV 1071
+++S ++C + + Q + +D C+ N + +++ L + + P LL+T+
Sbjct: 1041 FKKIILSFRECCTFQHSCQSKGSDMPCLLFFWQGN-RDDNLEQILHILAHKICPVLLQTI 1099
Query: 1072 VKGFREIKKVDILWKDKQKASKSHD---DSFGELYLRVSMSGQC--HITSLWSALMNDCH 1126
+KG + V+I+W + + GEL L + + W +++ C
Sbjct: 1100 IKGDSRVCTVNIIWISPDTTTWIRNPCKSRKGELALDIVLEKAAVKQRGDAWRIVLDACL 1159
Query: 1127 QIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLS 1186
++ +ID RS P I+ GI + L +++ K +L EHL+++AN+++
Sbjct: 1160 PVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVLKEHLILLANSMT 1219
Query: 1187 ATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWG 1246
G +G N+ G + ++ PF +A P F KA++ D+L V + WG
Sbjct: 1220 CAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFEKASEKCHTDSLSSIVASCSWG 1279
Query: 1247 KVPSVGTGGHFDIIYSGE--GRTLSKPVDVYNLL 1278
K +VGTG FD+++ + G +D+Y+ L
Sbjct: 1280 KHVTVGTGSRFDVLWDTKEIGPAQDGGIDIYSFL 1313
Score = 162 bits (410), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 149/540 (27%), Positives = 250/540 (46%), Gaps = 73/540 (13%)
Query: 170 DDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFI----LSKDAPFLKC 225
D +W F+ + +++ ++L +V +L+ + R++ + +D L+
Sbjct: 214 DGFWDFLARYGYRYGHNLS---RILLPSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQY 270
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMV--------------DYRGRDIELS 271
PV PN V ++ S + D LKK++ ++ IE +
Sbjct: 271 LPVPPNCLSVPDISDGVS---IMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEAN 327
Query: 272 HL---VQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDV-VLGKRNDDCF- 326
+L ++ L++ K+SR S + R + + + SS W++ + L R F
Sbjct: 328 NLQSSIEQYLEVRGTA--KTSR--SLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFS 383
Query: 327 -RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS------VCISFRLLEKGEL 379
R V+TGD ++ EIG+P ++A+R+ ER+N N + L +C+++R +
Sbjct: 384 SRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYR--DGLST 441
Query: 380 YVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVV 439
Y R+G + L G +++R + DGDIV INRPP+ H HSL AL+V V V
Sbjct: 442 YSLREGS----KGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHD-DHTV 496
Query: 440 TINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSL 499
INPL C P DFDGDC+H + PQ++GA+ E+ EL +++KQL++ SG L L DSL
Sbjct: 497 KINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSL 556
Query: 500 TAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS-KDSVWSGKQLFSMLLPPDFEY 558
+ +L E L+ QQL MF P + K W+ Q+ LP F+
Sbjct: 557 LSLKVLFE-RYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDC 615
Query: 559 TFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLI---------KRYRDKVLDFLYAAQE 609
+ +IS ++ DY ++ Q L+ ++ ++VL F + Q
Sbjct: 616 I--GERHWISKSAILKV-------DYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQP 666
Query: 610 VLCEWLSVRGMTVSLSDLYLASHSCS--RKILMD--EIFYGLREAQDTCNFQQLMVDSHM 665
+L E L G +VSL D + S +K + D + Y LR + QL ++H+
Sbjct: 667 LLMENLFSEGFSVSLEDFSIPSEVTQNIQKNVEDISSLLYNLRSMYN--ELLQLQAENHL 724
Score = 70.5 bits (171), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 7 EEGLEVPSGILTGISLGISTDTEKEKLSVME--IGAVSEVTNPRLGLPNPTNECSSCGAK 64
E+ + G ++GI G++T E SV + I S++TNP LGLP +C SCG
Sbjct: 3 EDSSTILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTA 62
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKER 109
+ CEGHFG+I+ P I HP +S++ ++L+ +C KC IRK +
Sbjct: 63 EPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSK 107
Score = 61.2 bits (147), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 26/229 (11%)
Query: 1229 KAGAVDNLQGSVDALGWG------KVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLLSTPV 1282
+ AV N Q S + GWG ++PS G + E T S+ S P
Sbjct: 1635 RGSAVKNDQ-SESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSGKKSRPE 1693
Query: 1283 SSK---------QNEKLKVCKAQGLISDKCGAKFGDFAFKGLGNLDFETISRGVLRKSWT 1333
S+ +N+K + K QG ++D D++ G+ + + +
Sbjct: 1694 GSRGWGSNNTEWKNKKNRPNKPQGPLND-------DYSAGGIFTATRQRVDIFTSEEQDI 1746
Query: 1334 YNDVLRLSNALKKILHK--YSIGQRLSEKDKTTVIRALYF-HPRRNEKLGIEPPDIEVTY 1390
DV + ++++I+H+ Y+ G LS D++ ++ ++ HP + K+G + V+
Sbjct: 1747 LLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVSR 1806
Query: 1391 HPEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKWKR 1439
H SRCF +V DG EDFSY KC+ ++ P+ AE + K+ R
Sbjct: 1807 HSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFR 1855
>gi|31127030|gb|AAF26646.2|AF138996_1 RNA polymerase II largest subunit [Nebalia hessleri]
Length = 624
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 158/596 (26%), Positives = 264/596 (44%), Gaps = 92/596 (15%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R
Sbjct: 3 RTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNIQKMMELVKRGNSQYPGAKYIVRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R +TDGD+V+ NR P++H S++ VKVLP
Sbjct: 63 GA----RIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N SP++ DFDGD ++ ++PQ++ R E+ + + +I QS + ++ +
Sbjct: 119 STF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHVTPRMIITPQSNKPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V L +M MF P + P I K +W+GKQLF+M++
Sbjct: 178 QDTLTAVRKMTKRDVFLEMHEMMNCLMFLPIWDGKMPQPAILK--PKPLWTGKQLFTMII 235
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY- 591
P PD E P K + K++ G L G+L
Sbjct: 236 PGNLNMVKTHSTHPDDEDDGPYKWISPGDTKVLVEHGDLVMGIICKKSLGASSGSLLHIC 295
Query: 592 LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++ D F Q V+ WL + G ++ + D + S +I +R+A+
Sbjct: 296 WMELGHDIAGRFYGNIQTVVNNWLLLEGHSIGIGD------TISDPNTYRDITDTIRKAK 349
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + +++ +H N + A + R ++E Q + L+ A
Sbjct: 350 E--DVMEVIHKAH-NDDLEATPGNTLRQ------TFENQVNRILNDARDKT--------G 392
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSC 765
A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR PH +
Sbjct: 393 GSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK- 451
Query: 766 AAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
Y P + VENS+L GL P E + H++ R+
Sbjct: 452 ---------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAET 496
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G + E P +S
Sbjct: 497 GYIQRRLIKAMESVMVNYDGTVRNSVG-QVIQLRYGEDGLAGEFVEFQKMPTVKMS 551
>gi|83320428|gb|ABC02841.1| RNA polymerase II largest subunit, partial [Spizellomyces
punctatus]
Length = 792
Score = 176 bits (446), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 152/567 (26%), Positives = 244/567 (43%), Gaps = 82/567 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + E+G+P +A L E + +N RL + LE
Sbjct: 269 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTFPETVTPYNIHRLQEMVRKGPLEH 328
Query: 377 GEL-YVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV + G +RID L+ G + R L D DIV+ NR PS+H S+
Sbjct: 329 GGAKYVIKDDG----QRIDLRYNRRGGDIHLQNGYRVERHLMDNDIVIFNRQPSLHKMSM 384
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ N SP++ DFDGD ++ ++PQ+ + EL EL + KQ+++
Sbjct: 385 MGHRVKVMPYST-FRXNLSVTSPYNADFDGDEMNLHVPQSYETKAELMELCMVPKQIVSP 443
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q ++ + QD+L + L + L M+ P P I K +W
Sbjct: 444 QKNAPVMGIVQDTLCGIRKFTKRDTFLRRDFVMNLLMWVPDWDGTVPQPAILKPV--PLW 501
Query: 543 SGKQLFSMLLPPDFEYTF--------PSKD--------VYISGGKLISA------EGSSW 580
+GKQ+ S+++PP T KD V I G+L++ GSS
Sbjct: 502 TGKQIMSLVIPPKINVTGYHSAFDEQTDKDDGSSSDCKVLIENGELLTGILCKKTVGSS- 560
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G + + + + F Q V+ WL G ++ + D + + +
Sbjct: 561 ---ANGIIHVTMNEHGPEAAKAFFNGTQLVVNHWLLQNGFSIGIGD------TIADRPTS 611
Query: 641 DEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
D+I + A ++ + + L ES SL + L+ + + +QAS
Sbjct: 612 DQITSTISNAKKEVTKIIEKAQSDKLEGLPGMTIRESFESLVNKELNRARDNAGKSAQAS 671
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
+ + N++ M AGSKG+ + + Q S C+G Q+ R
Sbjct: 672 LKEY------------------NNVKQMVVAGSKGSYINISQMSACVGQQNVEGK---RI 710
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P + D+T ++ + VENS+L GL P E F H++ R+
Sbjct: 711 PFGFKYRSLPHFTKDDHTPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVK 765
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVR 844
G + RRL+ + DL YDGTVR
Sbjct: 766 TAETGYIQRRLVKALEDLMAQYDGTVR 792
>gi|432330443|ref|YP_007248586.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
gi|432137152|gb|AGB02079.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
Length = 879
Score = 176 bits (446), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 209/881 (23%), Positives = 364/881 (41%), Gaps = 126/881 (14%)
Query: 49 LGLPNPTNECSSCGAKDRKA--CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI- 105
LG+ +P C +C D+KA C GHFG I+ ++H + I KLL C C +
Sbjct: 50 LGVIDPGLRCKTC---DQKASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRACGRVL 106
Query: 106 -----------RKERQKGAGSSRKE--QPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTA 152
++ Q G S K+ + RVC +C + K++ + + +
Sbjct: 107 LSPEEVEKVVGTEDDQTGDLLSEKDVKKERVCPHCGEQ--------QLKINFEKPTTFSE 158
Query: 153 IIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-R 211
++VE +K+ K P D + + PN ++ ++P + R
Sbjct: 159 VMVEDGKKVEHK----------LTPADIRARLEKI-PNEDLIPLG--------INPDVAR 199
Query: 212 EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS 271
E+ + L PV P VT P + D+ T L ++ R E
Sbjct: 200 PEWTI------LTVLPVPP----VTMRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQ 249
Query: 272 H------LVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDISNSSGLRWIKD-----VV 317
+++D ++ + H+ + A R + + S KD +
Sbjct: 250 DAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRLKGKDGRFRGSL 309
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG 377
GKR + R V++ DPN+ + ++G+P VA + + R+ +N E L +
Sbjct: 310 SGKRVNFSSRTVISPDPNLSVSQVGVPRAVANEMTVPVRVTPYNIEELRQIVRNGPTRPD 369
Query: 378 ELYVCRKGGLVRI--RRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
C ++R RR+ D +E G + R L DGD+VL NR PS+H S
Sbjct: 370 VNAPCGANYVIRPDNRRLRLGADNLDTVADMIEPGYTVERQLRDGDVVLFNRQPSLHRMS 429
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++A VKV+ +NP C P++ DFDGD ++ ++PQ AR E + L+++ + +++
Sbjct: 430 IMAHRVKVME-GRTFRLNPAVCPPYNADFDGDEMNMHVPQTEEARAEASILISVQENILS 488
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSV--W 542
+ G ++ D ++ +L D + Q L + + P+ K+ +D V W
Sbjct: 489 PRFGGPIIGGIHDHVSGIFMLTHDLRWFTKEQALYLLRYTGIERM-PEPGKV-EDGVEYW 546
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVY-ISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVL 601
S KQ+FS++LP + F + K E +++R +G L I +
Sbjct: 547 SNKQVFSVILPENLNMVFHASSCQNCDTCKKEVCERDAYVRIIDGKLESGTIDKKAIGAF 606
Query: 602 DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMV 661
D +V+ + +GM + + + R I++D +G+ + +D + +
Sbjct: 607 D-----GQVVNRIIRQQGMKRATKFIDDFTKLSIRGIMLDGFSFGI-DDEDLSKTEYGQI 660
Query: 662 DSHMNFLMSAKDSE-STRSLQGEHLSYEKQRSA--ALSQASVDAFKHVFWDIQNLAYKYG 718
D + +A D E R + L R+ L + +A ++
Sbjct: 661 DEVLK--NAALDVERRIRIYEDGQLEPMPGRTVEETLEMQIMQVLGKARDQTGQIAGRHL 718
Query: 719 SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR------FPHELSCAAWNRLR 772
NS + M +G++G++L L Q + C+G Q R PH +
Sbjct: 719 GLGNSAVVMAVSGARGSMLNLTQMAGCIGQQSVRGERIVRGYDDRTLPH---------FK 769
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLM 829
GD A +I ++S+ GLNP E F H++ R+ D A G L RR++
Sbjct: 770 KGDRGSDAHGFI-----QHSYKGGLNPTEFFFHAIGGRE-GLVDTAVRTSQSGYLQRRMI 823
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
++DL AYDGTVR+ G +I+QF Y +GT GD
Sbjct: 824 NALQDLKVAYDGTVRST-GGKIIQFEYGEDGTDPTKSAFGD 863
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 176 bits (446), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 159/586 (27%), Positives = 262/586 (44%), Gaps = 91/586 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + ++G+P +A L E + N RL + E
Sbjct: 261 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIALNLTYPEMVTRHNIRRLQEMVHRGAEEH 320
Query: 377 -GELYVCR-KGGLVRIRRIDA-----LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G V +R A L+ G ++ R L+D D+++ NR PS+H S++
Sbjct: 321 PGAKYVIRPDGSRVDLRVSGAQGAPNLQPGWVVERHLSDNDVIIFNRQPSLHKMSMMGHK 380
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV+P S+ +N SP++ DFDGD ++ ++PQ++ AR E+ +L + Q+++ QS +
Sbjct: 381 VKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVSPQSNK 439
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQ 546
++ + QD+L + + L M+ P P I K +W+GKQ
Sbjct: 440 PVMGIVQDTLCGITKFTRRDTFMDKAMVMNLLMWVPGWDGNVPVPAILK--PKPLWTGKQ 497
Query: 547 LFSMLLP-----------PDFEYTFPSKD---VYISGGKLISA------EGSSWLRDYEG 586
+ S+++P PD E T S V + G+L++ G+S G
Sbjct: 498 ILSLIIPKVNCITLHSTHPDGETTDISPGDTRVIVEDGELLAGIVCKKTVGTS----AGG 553
Query: 587 NLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ ++ + L Q ++ WL G ++ + D + R ++E+
Sbjct: 554 LVHVSWMEHGPEAAKALLNGCQTIVNHWLLHNGFSIGIGDTIADDDTMQR---INELIGE 610
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFK 704
R +N ++ A ++ + G L ++E Q + L+ A A
Sbjct: 611 ARAG--------------VNAVIEAAQKDTLKVETGLTLRETFEAQVNRLLNGAVNAA-- 654
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF-- 759
A K N++ M AGSKG+ + + Q S C+G Q+ P F++
Sbjct: 655 ------GGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRS 708
Query: 760 -PHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH + Y P + VENS+L GLNP E F H++ R+
Sbjct: 709 LPHFVK----------------DDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDT 752
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRNA GN I+QF+Y +G
Sbjct: 753 AVKTAETGYIQRRLVKALEDIMVKYDGTVRNAQGN-IIQFAYGEDG 797
>gi|31127032|gb|AAF26647.2|AF138997_1 RNA polymerase II largest subunit [Cypridopsis vidua]
Length = 624
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 161/606 (26%), Positives = 258/606 (42%), Gaps = 106/606 (17%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE------LY 380
R V+T DPN+++ ++G+P +A+ L E + +N + L RL+ +G Y
Sbjct: 3 RTVITPDPNLRIDQLGVPRSIAQNLTFPEIVTPFNHDDLQ-----RLVHRGNSQYPGAKY 57
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID LE+G + R + DGD+V+ NR P++H S++ V
Sbjct: 58 IIRDNG----ERIDLRFHPKPSDLHLEVGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRV 113
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N C SP++ DFDGD ++ ++PQ++ R E+ L + +I Q+ +
Sbjct: 114 KVLPWSTF-RMNLSCTSPYNADFDGDEMNMHVPQSMETRAEIENLHLTPRMVITPQANKP 172
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQL 547
++ + QD+L A + + V L Q+ L M P R P I K +W+GKQL
Sbjct: 173 VMGIVQDTLCAVRKMTKRDVFLEKDQIMDLLMHLPRWDGRMPVPAILK--PKPLWTGKQL 230
Query: 548 FSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGN 587
FS+++P PD E P K V I G+LI L G+
Sbjct: 231 FSLIIPGNVNLVRTHSTHPDDEDDGPYKWISPGDTKVLIEHGQLIMGILCKRTLGASAGS 290
Query: 588 LFQYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ Y Q V+ WL + G ++ + D + + EI
Sbjct: 291 LLHICWLELGHEICGLFYGQIQTVINNWLLIEGHSIGIGDTIADTQTYL------EIQTT 344
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+R+A++ N + + A + E E L Q + +
Sbjct: 345 IRKAKEDVN----------DVIQKAHNDE-----------LEPTPGNTLRQTFENMVNRI 383
Query: 707 FWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR
Sbjct: 384 LNDARDKTGSSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 443
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
PH + R VENS+L GL P E + H++ R+
Sbjct: 444 RTLPHFIKXXXXPESR--------------GFVENSYLAGLTPSEFYFHAMGGREGLIDT 489
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVG 874
G + RRL+ M + YDGT+RN+ +Q++Q Y +G + E P
Sbjct: 490 AVKTAETGYIQRRLIKAMESVTVGYDGTIRNSV-SQLIQLRYGEDGLAAEFVEFQSLPTV 548
Query: 875 SLSACA 880
S A
Sbjct: 549 KPSNVA 554
>gi|111278789|gb|ABH09092.1| RNA polymerase II largest subunit [Endocarpon pallidulum]
Length = 1010
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 157/597 (26%), Positives = 267/597 (44%), Gaps = 103/597 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++
Sbjct: 265 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNG 324
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR PS+
Sbjct: 325 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPSLX 380
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL++L +
Sbjct: 381 XXXXXXXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLD 439
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 440 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLWVPDWDGVIPQPAIFK--P 497
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 498 RPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 557
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ W G ++ + D +
Sbjct: 558 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWFLHNGFSIGIGDT-VPDRGT 610
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
KI + + ++ V+ + + +E +L G ++ ++E + S
Sbjct: 611 VEKI------------KSEVDKKKAEVER----ITQSAVAEDLEALPGMNVRETFESKVS 654
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 655 AALNGARDEA---------GTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSV 705
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 706 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 751
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 752 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 807
>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
Length = 1782
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 157/585 (26%), Positives = 263/585 (44%), Gaps = 82/585 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+T DP ++L ++G+P Q+A L + E + + N + + + +
Sbjct: 324 LMGKRVDFSARTVITPDPILRLDQLGVPQQIALNLTVPETVTAENIDEMRYLVQNGPTQW 383
Query: 376 KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R R+ID +E G + R L + D V+ NR PS+H SL
Sbjct: 384 PGAKYIIRHDE----RQIDLSQLKNRSDLHIEPGFKVERHLRNDDYVIFNRQPSLHKMSL 439
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKVLP S+ +N +P++ DFDGD ++ ++PQ+ E+ E++A+ Q+++
Sbjct: 440 MGHRVKVLPFSTF-RLNLSVTTPYNADFDGDEMNMHVPQSYETMAEVKEIMAVPNQIVSP 498
Query: 486 QSGRNLLSLGQDSLTAAHLL-MEDSVLLSHLQMQQLQM--FCPHRFLSPDIFKISKDSVW 542
QS + ++ + QDSL L ++D+ + L MQ L + + P I K +W
Sbjct: 499 QSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQLLMWINYEDDKLPPPAILK--PKPLW 556
Query: 543 SGKQLFSMLLPPDFEY------------------TFPSKDVYISGGKLISAE-GSSWLRD 583
+GKQ+FS+++P D + ++ + G+L+ S +
Sbjct: 557 TGKQIFSLIIP-DINIQKVGERQKKGEPKNLIWDSAGDNNILMRKGELLCGNLTKSTIGS 615
Query: 584 YEGNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G + + K V DF+ Q V+ WL G TV + D+ +A +KI
Sbjct: 616 SSGGMIHVIWKEKGPYVTRDFMSNTQLVINNWLHQHGFTVGVQDI-IAKKEIVQKIRESM 674
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
+ + + QQ+ + M L T+ +G S+E + L++A D
Sbjct: 675 VIFKKK-------VQQITQKAQMGKL-------KTQPGKGMMDSFEASVNQCLNKARDDC 720
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF 759
D+Q+ N L AM AGSKG+ L + Q C+G Q+ P F
Sbjct: 721 GNMALADLQSW--------NRLKAMVYAGSKGSNLNISQIMACVGQQNVEGKRIPFGF-- 770
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
H S +++ G ++ VEN +L GL P E F H++ R+
Sbjct: 771 -HRRSLPHFSKDDYGPESK--------GFVENCYLNGLTPQEFFFHAMGGREGLIDTAVK 821
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
G + RRL+ + D+ YDGTVR + QI+QF Y +G +
Sbjct: 822 TAETGYIQRRLIKALEDVMVKYDGTVRTS-KEQIIQFLYGEDGMA 865
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 19 GISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ E K+SV+ I S + +PR+G + C +C +
Sbjct: 21 AVQFGLLNPDEVRKMSVVNINNERTYDDRGIPNFSGINDPRMGTMDKELRCFTCKGS-QA 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK 111
C GHFG I+ + H L I K+L +C C + E++K
Sbjct: 80 DCPGHFGHIELAKPVYHAGLLEFIRKVLRCVCFYCSKLLAEKEK 123
>gi|126460695|ref|YP_001056973.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum calidifontis
JCM 11548]
gi|126250416|gb|ABO09507.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis
JCM 11548]
Length = 884
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 156/596 (26%), Positives = 260/596 (43%), Gaps = 96/596 (16%)
Query: 320 KRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--G 377
KR + R V++ DP+I + E+G+P +A+ L + ER+ +WN + L + R E G
Sbjct: 326 KRVNFSARTVISPDPHISINEVGVPIDIAKVLTVPERVTTWNIDALREYV-LRGPEAWPG 384
Query: 378 ELYVCRKGG------LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV G V+ RR A L G I+ R L DGDIVL NR PS+H S++
Sbjct: 385 ANYVITPEGRRIDLRYVKDRRALAERLAPGWIVERHLVDGDIVLFNRQPSLHRVSMMGHL 444
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKVLP ++ C P++ DFDGD ++ ++PQ AR E L+ ++K +I + G
Sbjct: 445 VKVLP-GRTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAEARTLMLVEKHIITPRYGG 503
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFS 549
++ QD + A+LL S L+ ++ L P+ + +W+GKQ+ S
Sbjct: 504 AIIGARQDYIIGAYLLSHKSTFLTKKEVAYLLGAGKSAEDPPEPAILHPVELWTGKQIIS 563
Query: 550 MLLPPDFEYTFPS------KDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR-------- 595
LP D + P+ +D Y + +G W+ GNL + ++ +
Sbjct: 564 HFLPKDLNWVQPTAFKSKCQDAY-------TCDGDEWIIVINGNLVKGVLDKKSIGAEQV 616
Query: 596 ----------YRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
Y +V +L ++ + WL +RG T + +YL + L I
Sbjct: 617 DSLWHRIARDYPPEVAGRWLDSSLRLFLRWLDLRGFTFGMDSVYLPKEAYDE--LDKLIE 674
Query: 645 YGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
GL++A + F+ +++ F + ++E + + LS+ DA
Sbjct: 675 SGLKKADELIQEFKSGRLEAMPGFTVEE--------------TFENKITEVLSRVREDA- 719
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+ KY K++ M K G++G+++ +VQ LG Q
Sbjct: 720 -------ATVVEKYIRKNSEGYLMAKTGARGSIVNIVQMVATLGQQ-------------- 758
Query: 764 SCAAWNRLRAGDNTECAK--------SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
R+R G T +Y+ V++ F GL+P+E F H+ RD
Sbjct: 759 -TIRGERIRRGYRTRTLPHFPVGDIGAYV-GGFVKSCFRCGLSPVEYFFHAAAGRDGLID 816
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ ++D+ AYDGTVR + G+ ++Q Y +G + G
Sbjct: 817 TAVRTAQSGYMQRRLINALQDVYVAYDGTVRFS-GSTLLQVLYGEDGVDVSKSDHG 871
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEV------------TNPRLGLPNPTNECS 59
VP I+ I GI + K SVME+ SEV + RLG+ P C
Sbjct: 10 VPRKIIKSIRFGILSPDMIRKYSVMEV-TTSEVYDEGGLPVRGGIADRRLGVSEPGARCE 68
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+CG + C GHFG I+ ++H + I +L + CP C I
Sbjct: 69 TCG-QTHDVCPGHFGHIELVKPVIHVGYARIIYDVLRATCPNCGRI 113
>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1755
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 156/590 (26%), Positives = 257/590 (43%), Gaps = 104/590 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QDSL + L + + + ++ P+ + P + W+G
Sbjct: 527 QKNGPLMGIVQDSLAGVYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTG 586
Query: 545 KQLFSMLLPPDFEYTFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLIKRYR---- 597
KQL SM++P + P D I G LI + G L L+K+
Sbjct: 587 KQLISMVIPQEISLHAPEGDSDIPLKDTGLLIQS----------GELLYGLLKKKNVGAA 636
Query: 598 --------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
D + FL Q+V+ WL G ++ + D + K +++I
Sbjct: 637 AGGIIHLCYNELGPDGAMAFLNGVQQVVTYWLLNTGHSIGIGD------TVPDKQTIEKI 690
Query: 644 FYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
Q+ +D+ + L + + +L G ++ ++E + S AL+ A
Sbjct: 691 --------------QVHIDTQKAEVAKLTAQATANELEALPGMNVRATFENKVSMALNSA 736
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPL 755
A +++ N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 737 RDQAGTTTQKSLKD--------SNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIPF 788
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 789 GFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREG 834
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ IVQF Y +G
Sbjct: 835 LIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDG 883
Score = 41.6 bits (96), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1466
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 160/614 (26%), Positives = 269/614 (43%), Gaps = 109/614 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V+ DPN+++ E+ +P +VA +L ER+ +N + + I+ L G
Sbjct: 362 GKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPG 421
Query: 378 ELYVCRK---GGLVRI------------RRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ RK G VRI R L++GDI++R + DGDIVL NR PS+H
Sbjct: 422 ANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDIVHRHVRDGDIVLFNRQPSLHK 481
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ V+V P + +N C+P++ DFDGD ++ ++PQ AR E EL+++ K L
Sbjct: 482 LSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNL 540
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKIS 537
+ ++G +++ QD +TAA+LL Q Q+ + L P I+K
Sbjct: 541 VTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIVSYLDDANLKIEMPPPTIWKPV 600
Query: 538 KDSVWSGKQLFSMLLPPDFEYTF-------------PSK------DVYISGGKLISAEGS 578
+ +W+GKQ+F++L+ P+ E P+K D+ + G L+
Sbjct: 601 R--LWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLVIQNSE 658
Query: 579 SWLRDYEGN---------LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLY 628
++ N +F +++ Y ++ + ++ WL+ G ++ ++D+
Sbjct: 659 IMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVI 718
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYE 688
IL + +A D C+ + +D ++ K + + E
Sbjct: 719 PGP------ILHASKDARVEKAYDECD---VFID------LAKKGKLENAPGCDQEATLE 763
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ S LS K ++ S+ N+ L M GSKG+++ + Q C+G
Sbjct: 764 SKISKTLSDVREAVGKICMQEL--------SRHNAPLIMATCGSKGSVINVAQMVACVGQ 815
Query: 749 QHSLAPLSFRFPHELSCAAWNRLRAGDNTEC-------AKSYIPSAVVENSFLTGLNPLE 801
Q +R+R G +K+ V NSF +GL P E
Sbjct: 816 Q---------------IIGGSRVRNGFQDRSLPHFRKKSKNPPSKGFVRNSFFSGLTPPE 860
Query: 802 CFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN-- 857
H+++ R+ G + RRLM + DLCT YD +VRN+ G IVQF Y
Sbjct: 861 FLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGG-IVQFQYGDD 919
Query: 858 ------IEGTSTPT 865
+EG +TP
Sbjct: 920 MLDPACLEGDATPV 933
Score = 43.1 bits (100), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G +C++CG +D + C GH+G+IK + H + +L+ IC C +
Sbjct: 69 RMGPNEKGKKCATCG-EDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTCARV 125
>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
Length = 1738
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 211/876 (24%), Positives = 369/876 (42%), Gaps = 137/876 (15%)
Query: 62 GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ--KGAGSSR-K 118
G D K GHFG I+ H ++ ++ L +C C + + K G+ + K
Sbjct: 2 GNLDDKDDPGHFGHIELARPCYHLGYIKEVLMCLRCVCFHCSRLMADPSDYKVQGAQKYK 61
Query: 119 EQPRV------CKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDY 172
Q R+ C+ R ++ + + G + ++ +
Sbjct: 62 AQKRLEAMHGLCRSKKRCEFATGAELQQAIMDGEQEGAVYGCGALQPTFRRRTAQ----- 116
Query: 173 WGFIPFDAQQEENSVKPN---RKVLSCKQVSYLLKDVDPSIREEFILSKDAPF------- 222
I + Q +E ++ +++LS + +L+++ S ++ +L D F
Sbjct: 117 --SIEVEFQPDEETIPGTGDRKQILSAHRAYEVLRNI--SDKDAKMLGLDPKFARPEWLL 172
Query: 223 LKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHL------KKMVDYRGRDIELSHLVQD 276
+ PV P + R + S D+ T L K ++ R E +H+V
Sbjct: 173 ITVLPVAPPHVRPS---IQLSDSNARSEDDLTHQLVNIVKANKTLESLCRAGEANHVVSQ 229
Query: 277 C-----LKISKLHLDKSSRKDSAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCF 326
K++ L ++++ KD + RQ+ K I I+ ++GKR D
Sbjct: 230 FEELLQYKVNALFDNEANAKDGVQERQRGGKPLKTIRQRLKGKEGRIRGNLMGKRVDFSA 289
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKGELYVCRKG 385
R V+T DPN+ + ++G+P +A+ L + ER+ +N L + + + G YV
Sbjct: 290 RTVITADPNLSIDQVGVPRSIAKTLTVPERVAPYNVHALMELVRNGPEVWPGARYVVHAD 349
Query: 386 GLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RR+D AL G ++ R L D D+++ NR PS+H S++A VKVL
Sbjct: 350 G----RRVDLRFVKHLNDLALHTGFVVERHLRDDDLIVFNRQPSLHKMSIMAHRVKVLD- 404
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S +N SP++ DFDGD ++ ++PQ + A+ EL +L+ + + +++ QS + ++ +
Sbjct: 405 HSTFRLNLSVTSPYNADFDGDEMNLHVPQNVAAKAELQQLMMVPRNVVSPQSNKPVMGIV 464
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRF--LSPDIFKISKDSVWSGKQLFSMLLP 553
QDSL A+ + + + + M+ + + P + +W+GKQ+FS++LP
Sbjct: 465 QDSLLASARMTSKETFIDQDLLFNIVMWVGDDWDGVVPQPAILKPKPLWTGKQIFSLILP 524
Query: 554 P-DFE---YTFPSK----------DVYISGGKLISA-EGSSWLRDYEGNLFQYL-IKRYR 597
+F FP K +V I G+L++ L G+L + ++
Sbjct: 525 KLNFAGKGARFPKKGGNTLNWSDGEVLIQSGRLVTGVMDKKSLGTSGGSLIHVIWLEMGH 584
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI--LMDE--------IFYGL 647
+ FL Q +WL ++ + D +A S R I ++DE + G
Sbjct: 585 VAAMHFLNRVQTTTNQWLVNVSFSIGIGDA-VADQSTMRTIEKIIDEAKLKVKELVQKGQ 643
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
R A + C + M++ S+E + L+ A A V
Sbjct: 644 RGALE-CQPGRTMIE-----------------------SFEAMVNRVLNAARTSAGLSVQ 679
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
I S+ N++ +M AGSKGN + + Q C+G Q+ R P+
Sbjct: 680 ESI--------SEANNVKSMAMAGSKGNDINISQIIACVGQQNVEGK---RIPYGFRRRT 728
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTL 824
D ++ + VENS+L GL+P E + H++ R+ D A G L
Sbjct: 729 LPHFAKDDLGPESRGF-----VENSYLRGLSPQEFYFHAMGGRE-GLIDTACKTAQTGYL 782
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ M + YDGTVRN GN +VQF Y +G
Sbjct: 783 QRRLVKSMESIMVKYDGTVRNNQGN-VVQFLYGEDG 817
Score = 42.4 bits (98), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 73/356 (20%), Positives = 128/356 (35%), Gaps = 72/356 (20%)
Query: 937 EYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSM----------------------KHFS 974
E A EV+ LE L D+ + + I+Y P S K S
Sbjct: 1082 EEKAREVQAKLEHTTLGDVTTLTQIVYDPDATSTVVEDDREFVAAYCDVPDEDFDPKAMS 1141
Query: 975 PWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKE 1034
PW+ + +E+ + D R A T + D ++ C + +
Sbjct: 1142 PWVLRMELNREV----------VADKKLRMADVAAT-----IADEYGADLHCIYAD---D 1183
Query: 1035 CNDAFCVTVMIVENFKRTSIDLETIQM---------WVMPFLLKTVVKG-------FREI 1078
D + V I R D + W FL + ++G R +
Sbjct: 1184 NADKLVLRVRIRSGGARAGGDDAAPALGDAEVDDDEWT--FLRR--IEGNMLSDLRLRGV 1239
Query: 1079 KKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSH 1138
+V ++ K K ++ D+ G L + T+L +A++ D +D TR+
Sbjct: 1240 PRVTKVYIKKTKMTRWDPDT-GALGGDEEWVLETDGTNL-AAILGDRD-----VDHTRTC 1292
Query: 1139 PDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKG 1198
++I C GI+ Q L L IS G + HL ++ +T+ G + ++ G
Sbjct: 1293 SNDIVEICDVMGIEGTRQALLQMLREVISFDGAYVNYRHLAVLCDTMCFRGSLMAISRHG 1352
Query: 1199 LALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
+ + S P + A F K+A D++ G + G++ VG+G
Sbjct: 1353 I-----NRGDSGPLLSASFEETVEILFKSAVYARSDDVDGVTPNIMLGQLAHVGSG 1403
>gi|397135808|gb|AFO11399.1| RNA polymerase I, partial [Ogataea methanolica]
Length = 870
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 150/568 (26%), Positives = 261/568 (45%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN+ L ++G+P +A L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLDLDQVGVPKSIARTLSYPEIVTPYNIQKLTEYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + Q+ + + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDTFVEYDQVMNMCFWIPQWDGVVPQPAILKPKPLWTG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ S+ +P D P S + + G + + + G L +++
Sbjct: 388 KQMMSLCIPKGIFLQRLDGSLLSPKDSGMLIVDGEIMFGVVNKATVGATAGGLIHTVMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V ++ Q+V+ WL G ++ + D + + M I + A++
Sbjct: 448 KGPQVCAQMFGNIQKVVNYWLLHNGFSIGIGDAIADTET------MKTITETIGVAKEKV 501
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q++++D+ N L + + R S+E++ S L++A A K A
Sbjct: 502 --QEVILDAQNNIL-EPEPGMTVRE------SFEQKVSKILNEARDTAGKS--------A 544
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
+ N++ M AGSKG+ + + Q S C+G Q R S +
Sbjct: 545 ESSLKEANNVKQMVTAGSKGSYINISQMSACVGQQIVEGK---RINFGFSDRSLPHFTKD 601
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 602 DYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKAL 656
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGT RN+ G+ I+QF Y +G
Sbjct: 657 EDIMVHYDGTTRNSLGD-IIQFIYGEDG 683
>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
Length = 1760
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 157/594 (26%), Positives = 259/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N RL + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVLRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVRELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ + + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
D + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 41.2 bits (95), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|157741530|gb|ABV69470.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 989
Score = 176 bits (445), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 160/617 (25%), Positives = 270/617 (43%), Gaps = 103/617 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL G + R + DGDI+L NR P
Sbjct: 322 PQMHPGARYIIRENN----ERIDLRYHKNTADIALRTGWKVERHIMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q R L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNRPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D ++++ G+L+
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKPGQPPVERFAPAGDSGLFVADGQLMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGVIHTIFNEFGH------ETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV 601
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ F+ + + + + +E +L G ++ ++E + +
Sbjct: 602 EK-----------------IKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVA 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
AAL+ A D A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGAR---------DQAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
R P D + +K + VENS+L GL P E F H++ R+
Sbjct: 696 EGK---RIPFGSKYRTLPHFAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ + ++ YDGTVR++ GN +VQF Y +G I
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-VVQFIYGEDGLD--GAHIE 804
Query: 870 DQPVGSLSACAISEAAY 886
Q V A+S+AA+
Sbjct: 805 SQRV---DVIAMSDAAF 818
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1746
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 150/576 (26%), Positives = 256/576 (44%), Gaps = 73/576 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P +A L E + N ++L + E
Sbjct: 353 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLVKNGPDEH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R + DGD ++ NR PS+H S+
Sbjct: 413 PGAKYVIRSDGT----RIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ L + +++
Sbjct: 469 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTYETRAEVMNLCMVPLNIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V ++ + + ++ P P I K W
Sbjct: 528 QRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNILLWVPDWDGVIPQPAILK--PRPRW 585
Query: 543 SGKQLFSMLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYEGNLFQ 590
+GKQ+ S+++P SKD I G+L+ + GN
Sbjct: 586 TGKQIVSLIIPKIVNSYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIV 645
Query: 591 YLI--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+++ ++ D + F Q V+ WL G ++ + D + K +++I +
Sbjct: 646 HIVFNEQGPDAAMAFFNGCQRVINYWLLHNGFSIGIGD------TIPNKETIEQIEKAIA 699
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHV 706
+ + + + L+ S SL G ++ ++E Q S AL++A A
Sbjct: 700 KQK-----------AEVTELVEKATSNELESLPGMNVRETFESQVSKALNEARNTAGTKT 748
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
+ ++ N+ + M ++GSKG+ + + Q S +G Q S+ R P
Sbjct: 749 EDGLLDI--------NNAVQMARSGSKGSTINISQMSALVG-QQSVE--GKRIPFGFKYR 797
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 798 TLPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 852
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 853 QRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 887
Score = 49.3 bits (116), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + +C++C ++ C GHFG I+ + HP FL KLL +C C
Sbjct: 55 LNDPRLGSIDRQFKCATCD-QNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCG 113
Query: 104 TIRKERQKGA 113
++ +R A
Sbjct: 114 KVKLDRSNPA 123
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
dendrobatidis JAM81]
Length = 1797
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 152/580 (26%), Positives = 252/580 (43%), Gaps = 79/580 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + ++G+P +A L E + +N + L + E
Sbjct: 351 LMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEH 410
Query: 377 -GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G R+D L+ G + R L D D ++ NR PS+H S+
Sbjct: 411 PGAKYVIRDNG----ERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPSLHKMSM 466
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VK++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ L + Q+++
Sbjct: 467 MGHRVKIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSP 525
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q ++ + QD+L + L M L M+ P +P I K +W
Sbjct: 526 QKNAPVMGIVQDTLCGIRKFSKRDTFLKRDLMMNLLMWVPDWDGIIPTPAILK--PIPLW 583
Query: 543 SGKQLFSMLLP-----------PDFEYTFPS---KDVYISGGKLI------SAEGSSWLR 582
+ KQ+ S++LP PD E T S V I G+L+ GSS
Sbjct: 584 TAKQIISLILPKINLVGFHAAHPDNEKTDISPGDTKVLIEDGELLMGILCKRTVGSS--- 640
Query: 583 DYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G + + + D + F Q V+ WL G ++ + D + + + D
Sbjct: 641 -ANGIIHTSMNELGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTIADRQTM--ETINDT 697
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
I + RE Q+ D+ + L +S SL + L+ + + ++ S+
Sbjct: 698 IAHAKREVNKI--IQKAQTDT-LEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKE 754
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ N++ M +GSKG+ + + Q + C+G Q+ R P
Sbjct: 755 Y------------------NNVKQMVVSGSKGSFINISQMTACVGQQNVEGK---RIPFG 793
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D++ ++ + VENS+L GL P E F H++ R+
Sbjct: 794 FKDRTLPHFTRDDHSPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 848
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRNA G+ IVQF+Y +G
Sbjct: 849 TGYIQRRLVKALEDVMAKYDGTVRNALGD-IVQFTYGEDG 887
Score = 47.4 bits (111), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEVTN----------PRLGLPNPTNECSSCGAKDRKAC 69
+ GI + E + +SV +I + N PRLG + +C +CG ++ C
Sbjct: 23 VQFGILSPEETKAMSVAKIEHFELMDNDRPKLGGLLDPRLGTIDRNFKCQTCG-ENMTDC 81
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
GHFG I+ + H FL I K+L +C C ++
Sbjct: 82 PGHFGHIELAKPVFHQGFLKIIKKVLECVCHYCGKLK 118
>gi|392572905|gb|EIW66048.1| hypothetical protein TREMEDRAFT_72470 [Tremella mesenterica DSM
1558]
Length = 1457
Score = 175 bits (444), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 163/613 (26%), Positives = 273/613 (44%), Gaps = 109/613 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V+ DPN+++ E+ +P +VA +L ER+N++N + I L G
Sbjct: 362 GKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVNNYNIVAMRQAIIHGAKLHPG 421
Query: 378 ELYVCRK---GGLVR-----IRRID-------ALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ RK G VR I+ ++ L++GD+++R + DGDI L NR PS+H
Sbjct: 422 ANILERKAPDGTTVRTALHMIKDVERRTLVARELKIGDVVHRHVRDGDIALFNRQPSLHK 481
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ V+V P + +N C+P++ DFDGD ++ +IPQ AR E EL+++ K L
Sbjct: 482 LSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLHIPQTEEARTEALELMSVKKNL 540
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL-QMFCPHRF----LSPDIFKIS 537
+ ++G +++ QD +T + LL S Q Q+ FC P I+K
Sbjct: 541 VTPRNGEPIIAAIQDFITGSFLLSRRDRFFSRQQFTQICSFFCDADLDIDIPPPTIWKPQ 600
Query: 538 KDSVWSGKQLFSMLLP--------------------PDFEYTFPSKDVYISGGKLISAEG 577
+ +W+GKQ+F++L+ PD + FP D+ + G L+
Sbjct: 601 R--LWTGKQIFNVLMKPNRRSRIKVNLEAKCRTMKDPDPKDHFPP-DMSPNDGYLVIVNS 657
Query: 578 SSWLRDYEGN---------LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSD- 626
++ N +F +++ Y D+ + ++ WL+ +G ++ ++D
Sbjct: 658 EIMCGVFDKNTVGDGKKKSVFGVILRDYGPDEAAAGMNRLAKLAARWLANQGFSLGINDV 717
Query: 627 -----LYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQ 681
L+L+ + EA C+ L+ + L +A + +L
Sbjct: 718 IPGPKLHLSKDG------------KVEEAYKYCD--DLIEKAKKGLLENAPGCDQDTTL- 762
Query: 682 GEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQ 741
E+Q S LS+ V ++ L + S+ N+ L M GSKG+++ + Q
Sbjct: 763 ------EQQISGTLSK--------VRGEVGELCMQDLSRHNAPLIMATCGSKGSVINVAQ 808
Query: 742 HSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLE 801
C+G Q R P+ + +K + V NSF TGL+P E
Sbjct: 809 MVACVGQQ---IISGNRIPNGFQDRSLPHFHKKSRNPPSKGF-----VRNSFYTGLSPTE 860
Query: 802 CFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN-- 857
H+++ R+ G + RRLM M DL T YD +VRN+ G +VQF Y
Sbjct: 861 FLFHAISGREGLVDTAVKTAETGYMARRLMKAMEDLSTHYDLSVRNSEGG-VVQFQYGDD 919
Query: 858 ------IEGTSTP 864
+EG +TP
Sbjct: 920 MLDPACLEGDATP 932
Score = 44.3 bits (103), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI-- 105
R+G C +CG + K C GH+GFIK + H + +L+ IC C I
Sbjct: 69 RMGPNEKGRRCLTCGEEPAK-CVGHYGFIKLALPVFHIGYFRPTINMLSCICKTCSRILL 127
Query: 106 -RKERQ 110
R+ER+
Sbjct: 128 PRQERE 133
>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia
sclerotiorum]
Length = 1011
Score = 175 bits (444), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 149/580 (25%), Positives = 258/580 (44%), Gaps = 81/580 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + N ++L + E
Sbjct: 269 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLVKNGPDEH 328
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R + DGD ++ NR PS+H S+
Sbjct: 329 PGAKYVIRSDGT----RIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQPSLHKESM 384
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ L + +++
Sbjct: 385 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTYETRAEVMNLCMVPLNIVSP 443
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V ++ + + ++ P + P + W+G
Sbjct: 444 QRNGPLMGIVQDTLAGVYKICRRDVFITKEHLMNILLWVPDWDGVIPQPAILKPRPRWTG 503
Query: 545 KQLFSMLLPPDFEYTFPSKD------------VYISGGKLISAEGSSWLRDYEGNLFQYL 592
KQ+ S+++P SKD I G+L+ + GN ++
Sbjct: 504 KQIVSLIIPKIVNSYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIVHI 563
Query: 593 I--KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ ++ D + F Q V+ WL G ++ + D + K +++I + +
Sbjct: 564 VFNEQGPDAAMAFFNGCQRVINYWLLHNGFSIGIGD------TIPNKETIEQIEKAIAKQ 617
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFW 708
+ + + L+ S SL G ++ ++E Q S AL++A A
Sbjct: 618 K-----------AEVTELVEKATSNELESLPGMNVRETFESQVSKALNEARNTAGTKTED 666
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHE 762
+ ++ N+ + M ++GSKG+ + + Q S +G Q P F++ PH
Sbjct: 667 GLLDI--------NNAVQMARSGSKGSTINISQMSALVGQQSVEGKRIPFGFKYRTLPH- 717
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 718 --------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 764
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 765 TGYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 803
>gi|405121486|gb|AFR96255.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1437
Score = 175 bits (444), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 161/613 (26%), Positives = 270/613 (44%), Gaps = 107/613 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V+ DPN+++ E+ +P +VA +L ER+ +N + + I+ L G
Sbjct: 362 GKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNIQLMRQAIINGSKLHPG 421
Query: 378 ELYVCRK---GGLVRI------------RRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ RK G VRI R L++GD+++R + DGDIVL NR PS+H
Sbjct: 422 ANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDVVHRHVRDGDIVLFNRQPSLHK 481
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ V+V P + +N C+P++ DFDGD ++ ++PQ AR E EL+++ K L
Sbjct: 482 LSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNL 540
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKIS 537
+ ++G +++ QD +TAA+LL Q Q+ + L P I+K
Sbjct: 541 VTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIASYLGDANLKIEMPPPTIWKPV 600
Query: 538 KDSVWSGKQLFSMLLPPDFEYTF-------------PSK------DVYISGGKLISAEGS 578
+ +W+GKQ+F++L+ P+ E P+K D+ + G L+
Sbjct: 601 R--LWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPPDMSPNDGYLVIQNSE 658
Query: 579 SWLRDYEGN---------LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLY 628
++ N +F +++ Y ++ + ++ WL+ G ++ ++D+
Sbjct: 659 IMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDVI 718
Query: 629 LASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYE 688
IL + +A D C+ + +D ++ K + + E
Sbjct: 719 PGP------ILHASKDARVEKAYDECD---VFID------LAKKGKLENAPGCDQEATLE 763
Query: 689 KQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ S LS K ++ S+ N+ L M GSKG+++ + Q C+G
Sbjct: 764 SKISKTLSDVREAVGKICMQEL--------SRHNAPLIMATCGSKGSVINVAQMVACVGQ 815
Query: 749 Q---HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLEC 802
Q S F+ PH R +K + V NSF +GL P E
Sbjct: 816 QIIGGSRVRNGFQDRSLPH---------FRKKSKNPPSKGF-----VRNSFFSGLTPPEF 861
Query: 803 FIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN--- 857
H+++ R+ G + RRLM + DLCT YD +VRN+ G IVQF Y
Sbjct: 862 LFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGG-IVQFQYGDDM 920
Query: 858 -----IEGTSTPT 865
+EG +TP
Sbjct: 921 LDPACLEGDATPV 933
Score = 43.5 bits (101), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+ R+G +C++CG +D + C GH+G+IK + H + +L+ IC C +
Sbjct: 67 DARMGPNEKGKKCATCG-EDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTCARV 125
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 175 bits (444), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 161/582 (27%), Positives = 257/582 (44%), Gaps = 76/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P VA L + R+ +N + LS ++
Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPTRVTPFNIQELSALVANG 400
Query: 373 LLEK-GELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
E G ++ R GL RID L G I+ R L DGDIVL NR PS+H
Sbjct: 401 PTEHPGAKHIIRSDGL----RIDLRYVKNKSDLLLANGWIVERHLRDGDIVLFNRQPSLH 456
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ KVL S+ +N C SP++ DFDGD ++ ++PQ++ AR E ++ +
Sbjct: 457 KMSIMGHMAKVLDWSTF-RLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHSPRV 515
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS R ++ + QDSL A + + V + M + M+ R P I++
Sbjct: 516 IVSGQSNRPVMGIVQDSLLAVQKMTKRDVFVKKDLMMNILMWVEDWDGRIPPPAIYR--P 573
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRD 598
+ +W+GKQ+ SM+LP + K G + +R EG L + I D
Sbjct: 574 EELWTGKQIMSMILP---KINLTGKANNGGPGPNTFNAYDNLVRVMEGELIEGTI----D 626
Query: 599 KVLDFLYAAQEVLCEWLSV--------RGMTVSLSDLYLASHSCSRKILMDEI--FYGLR 648
K + WL V T +++ ++ S S + D I F +
Sbjct: 627 KKTIGSGMGGLIHTAWLDVGHEDTARFMNQTQVVTNYWVLQSSFSIGVC-DTIADFATME 685
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+ T N +L V + QG+ E Q + +++F+
Sbjct: 686 QIASTINKAKLQVLDLVR--------------QGQRGELETQPGRTM----IESFEQFVN 727
Query: 709 DIQNLAYKYGSKD--------NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
+ N A + K NS+ AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 728 KVLNTARDHAGKSAQASLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGN---RIP 784
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ D ++ + VENS+L+GL P E F H++ R+
Sbjct: 785 YGFKRRTLPHFSKDDLGPESRGF-----VENSYLSGLTPQEFFFHAMGGREGLIDTACKT 839
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGT+R + G QIVQF Y +G
Sbjct: 840 AETGYIQRRLVKAMETVMARYDGTLRTS-GGQIVQFLYGEDG 880
>gi|302500232|ref|XP_003012110.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
gi|291175666|gb|EFE31470.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
Length = 1444
Score = 175 bits (444), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 163/607 (26%), Positives = 263/607 (43%), Gaps = 108/607 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L CI G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 431
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G R+ + L GDI+ R L DGDIVL NR PS+H S+++
Sbjct: 432 ANYLIKEGNSFRLFLKYGNLNMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---QMFCPHRFLSPDIFKISKDSVWSGKQ 546
+++ QD +TAA+LL Q+ + RF P I +W+GKQ
Sbjct: 551 PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610
Query: 547 LFSMLLPPDFEYTFPSK---DVYISGGKLISA------EGSSWL--RDYE---------- 585
+FS+L+ P+ + P K D KL+ E WL R+ E
Sbjct: 611 VFSVLMRPNKDC--PVKVNLDAACRQLKLVKGQPRDLCENDGWLCIRNSEMLCGVADKST 668
Query: 586 ------GNLFQYLIKRYRDKVLDFLYAA--------QEVLCEWLSVRGMTVSLSDLYLAS 631
N+F ++I+R DF YAA ++ WL+ +G ++ ++D+Y
Sbjct: 669 IGAGKKDNIF-FVIQR------DFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPG- 720
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQ----LMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
E L++ FQQ + S M DS T
Sbjct: 721 ----------ESLVKLKDTLINTAFQQCDDLITAASKEKPQMGKSDSRQT---------A 761
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E + + L++ A ++ ++ SK N+ L M GSKG+ + + Q +G
Sbjct: 762 ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMVAVVG 813
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q + + + + R ++ + V NSF +GL P E H++
Sbjct: 814 QQSIENARVSKGFQDRTLPHFAR--------HSQHALAKGFVRNSFFSGLTPTEFLFHAM 865
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------N 857
+ R+ G ++RRLM + DL T YD TVR++ + I+QF Y N
Sbjct: 866 SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDS-SSFIIQFQYGDDQLDPVN 924
Query: 858 IEGTSTP 864
+E ++ P
Sbjct: 925 MEASAKP 931
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ N ++ C +CG D + C GHFG+++ H + ++L IC C I
Sbjct: 66 DPRLGISNKSDTCETCGG-DLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKI 124
Query: 106 -----------RKERQKGAGSSRKEQ--PRVCKYCVRNPAQWY 135
++ R+ G + R+ Q R+ C + P +Y
Sbjct: 125 LLPEDERRSYLKELRRPGLDNLRRMQINKRINVRCRKTPVCYY 167
Score = 48.9 bits (115), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I+ R+ +++ GI+A + + S +S G I P H+ ++A+ ++ G
Sbjct: 1281 DGIEGHRTRTNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKG 1338
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D +QG + + GK
Sbjct: 1339 EVLGITRFGLAKIR-----DSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTI 1393
Query: 1250 SVGTG 1254
S+GTG
Sbjct: 1394 SLGTG 1398
>gi|157741618|gb|ABV69514.1| RNA polymerase II largest subunit, partial [Verrucula biatorinaria]
Length = 999
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 165/632 (26%), Positives = 275/632 (43%), Gaps = 102/632 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGD++L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNAPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKELQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMD 641
+ + F AQ V+ WL G ++ + D + + K +D
Sbjct: 550 GSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKREVD 609
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
R+ + Q+ V +E +L G ++ ++E + SAAL+ A
Sbjct: 610 ------RKKAEVERITQMAV------------AEDLEALPGMNVRETFESKVSAALNGAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A A + KD N+ + M +AGSKG + + Q + +G Q P
Sbjct: 652 DEA---------GTATENSLKDINNAIQMARAGSKGTTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G I
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD--GAHIEK 805
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLL 902
Q V A+S+AA+ + + L+E+ L+
Sbjct: 806 QRV---DVIAMSDAAFEKQFR-VDLMESKKLV 833
>gi|336091018|gb|AEI00186.1| RNA polymerase II largest subunit [Capronia peltigerae]
Length = 973
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 149/575 (25%), Positives = 254/575 (44%), Gaps = 76/575 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + ++N ERL C++
Sbjct: 259 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTNFNIERLKRCVANG 318
Query: 373 LLE-KGELYVCRKGGLVRIRRIDALELGDI-------IYRPLTDGDIVLINRPPSIHPHS 424
E G Y R G RI A + GDI + R + DGDI+L NR PS+
Sbjct: 319 PTEWPGARYAIRGSG-DRIDLRHAKKSGDINLQYGWKVERHIVDGDIILFNRQPSLXXXF 377
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
+ L+V SP++ DFDGD ++ ++PQ+ AR EL +L + + +++
Sbjct: 378 RLNLSV---------------TSPYNADFDGDEMNLHVPQSQEARAELLQLCMVPRNIVS 422
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWS 543
Q L+ + QD+L + L V L+ Q+ + ++ P + P + W+
Sbjct: 423 PQKNAPLMGIVQDTLCGVYKLTRRDVFLTKEQVMNIMLWVPEWDGVIPQPALLKPTPRWT 482
Query: 544 GKQLFSMLLP-----------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLF 589
GKQ+FSM+LP + E+ F D + + GG+++ + + G +
Sbjct: 483 GKQIFSMVLPSNLNLQRKEDKTELEHWFHPSDASLIVQGGEVMMGQMHKKHVGTGAGGVI 542
Query: 590 QYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ D + F AQ V+ WL G ++ + D + +
Sbjct: 543 HTIFNENGHDAAMAFFNGAQVVVNYWLLHYGFSIGIGDTVPDVDTVGK------------ 590
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
QD + Q+ +VD + A E + ++E + L++A
Sbjct: 591 -IQDVVDTQKALVDK-ITAKAYANKLEPAPGMNVRQ-TFESKVMMELNKAR--------- 638
Query: 709 DIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
D+ + + KD N+L M ++GSKG+ + + Q +G Q A R P +
Sbjct: 639 DVAGDSAQQSLKDLNNLTQMARSGSKGSGINIAQVMALVGQQ---AVEGKRIPFGFNYRT 695
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + ++ +I ENS+ GL P E F H++ R+ G +
Sbjct: 696 LPHFSKDDYSATSRGFI-----ENSYXRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 750
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + ++ YDGTVR++ GN ++QF Y +G
Sbjct: 751 RRLVKALEEVSVKYDGTVRDSRGN-VMQFVYGEDG 784
>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe 972h-]
gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RPC158
gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe]
gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
Length = 1405
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 157/594 (26%), Positives = 264/594 (44%), Gaps = 78/594 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ ++ +P ++A+ L ER+ + N + L CI + + G
Sbjct: 352 GKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Query: 378 ELYVC-RKGGLVRIRRI-------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV R+ G R R D L++GDI+ R L D D+VL NR PS+H S++A
Sbjct: 412 ANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHL 471
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P ++ N C P++ DFDGD ++ ++PQ A+ E EL+ + L++ ++G
Sbjct: 472 VKVRPWRTL-RFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGE 530
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF----CPHRFLSPDIFKISKDSVWSGK 545
+++ QD +TAA+LL L + + + H L P I +W+GK
Sbjct: 531 PIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAI-IKPRCLWTGK 589
Query: 546 QLFSMLLPPD-FEYTFPSKDVYISGGKLISA--------EGSSWLRDYE----------- 585
Q+F++L+ P+ F + D I + +G +R+ E
Sbjct: 590 QVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVDKSVV 649
Query: 586 -----GNLFQYLIKRYRD-KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+LF +++ Y + + + ++ +L RG ++ + D+ S+K +
Sbjct: 650 GDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEI 709
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMS-AKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ Y + +F+M AK + + + E + S+ LS+
Sbjct: 710 LVNKAYATSD----------------DFIMQYAKGILECQPGMDQEATLEAKISSTLSK- 752
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
V D+ + NS L M GSKG+ + + Q C+G Q R
Sbjct: 753 -------VRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGK---R 802
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P + AK + V NSF +GL P E H+++ R+
Sbjct: 803 VPDGFQDRSLPHFHKNSKHPLAKGF-----VSNSFYSGLTPTEFLFHAISGREGLVDTAV 857
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G ++RRLM + DL +AYDGTVR++ + +VQF Y +G PT GD
Sbjct: 858 KTAETGYMSRRLMKSLEDLSSAYDGTVRSS-NSDVVQFVYGDDGLD-PTYMEGD 909
Score = 42.0 bits (97), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 49 LGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+G N C++CG + C GHFG++K + H + +L +IC C ++
Sbjct: 57 MGTSNKQINCATCG-ESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSV 112
Score = 41.6 bits (96), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
T++ +++ GI+A ++ + ++ G + P H++++ + ++ GE +G+
Sbjct: 1258 TKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGI 1317
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
G+A + S A F AA A D+++G + + GK+ +GT
Sbjct: 1318 TRFGVAKMK-----DSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGT- 1371
Query: 1255 GHFDIIYSGEGRTLSKPVDVYNLLSTP 1281
F +I E KP ++ L TP
Sbjct: 1372 NVFQLIRRTEEEEEQKPKEL--LFDTP 1396
>gi|327294643|ref|XP_003232017.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
rubrum CBS 118892]
gi|326465962|gb|EGD91415.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
rubrum CBS 118892]
Length = 1444
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 163/607 (26%), Positives = 263/607 (43%), Gaps = 108/607 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L CI G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 431
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G R+ + L GDI+ R L DGDIVL NR PS+H S+++
Sbjct: 432 ANYLIKEGNSFRLFLKYGNLNMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---QMFCPHRFLSPDIFKISKDSVWSGKQ 546
+++ QD +TAA+LL Q+ + RF P I +W+GKQ
Sbjct: 551 PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610
Query: 547 LFSMLLPPDFEYTFPSK---DVYISGGKLISA------EGSSWL--RDYE---------- 585
+FS+L+ P+ + P K D KL+ E WL R+ E
Sbjct: 611 VFSVLMRPNKDC--PVKVNLDAACRQLKLVKGQPRDLCENDGWLCIRNSEMLCGVADKST 668
Query: 586 ------GNLFQYLIKRYRDKVLDFLYAA--------QEVLCEWLSVRGMTVSLSDLYLAS 631
N+F ++I+R DF YAA ++ WL+ +G ++ ++D+Y
Sbjct: 669 IGAGKKDNIF-FVIQR------DFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPG- 720
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQ----LMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
E L++ FQQ + S M DS T
Sbjct: 721 ----------ESLVRLKDTLINTAFQQCDDLITAASKEKPQMGKSDSRQT---------A 761
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E + + L++ A ++ ++ SK N+ L M GSKG+ + + Q +G
Sbjct: 762 ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMVAVVG 813
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q + + + + R ++ + V NSF +GL P E H++
Sbjct: 814 QQSIENARVSKGFQDRTLPHFAR--------HSQHALAKGFVRNSFFSGLTPTEFLFHAM 865
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------N 857
+ R+ G ++RRLM + DL T YD TVR++ + I+QF Y N
Sbjct: 866 SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDS-SSFIIQFQYGDDQLDPVN 924
Query: 858 IEGTSTP 864
+E ++ P
Sbjct: 925 MEASAKP 931
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ N ++ C +CG D + C GHFG+++ H + ++L IC C I
Sbjct: 66 DPRLGISNKSDTCETCGG-DLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKI 124
Query: 106 -----------RKERQKGAGSSRKEQ--PRVCKYCVRNPAQWY 135
++ R+ G + R+ Q R+ C + P +Y
Sbjct: 125 LLPEDERRSYLKELRRPGLDNLRRMQINKRINVRCRKTPVCFY 167
Score = 48.9 bits (115), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I+ R+ +++ GI+A + + S +S G I P H+ ++A+ ++ G
Sbjct: 1281 DGIEGHRTRTNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKG 1338
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D +QG + + GK
Sbjct: 1339 EVLGITRFGLAKIR-----DSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTI 1393
Query: 1250 SVGTG 1254
S+GTG
Sbjct: 1394 SLGTG 1398
>gi|328874135|gb|EGG22501.1| RNA polymerase III [Dictyostelium fasciculatum]
Length = 1507
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 229/933 (24%), Positives = 373/933 (39%), Gaps = 148/933 (15%)
Query: 30 KEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLS 89
+EK + M G + +LG + C +CG C GHFG+I + H +
Sbjct: 136 QEKRAPMPYGCLDN----KLGTSDKGVNCQTCGLSIVD-CVGHFGYIDLQLPVFHIGYFK 190
Query: 90 DIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYCVRNP--AQWYPRMRFKL----- 142
+I +L IC C T+ + + A RK + R R + Y R K
Sbjct: 191 NITNILQMICKNCSTVLLDDEPKATYLRKMRNRKLDVLQRRALFKKVYTDCRKKKICPKC 250
Query: 143 -SSKDLSGKTAIIVEIDEKLSK--KNKKLPDDYWGFIPFDAQQEENSVKPNRKVLS---- 195
S K + + I EK K +++ L + + + +A+ N VK ++ L+
Sbjct: 251 NSVNGPVKKVSALKLIHEKYKKEEEHRDLIEQFEDALKANAEM-RNHVKKAQEDLNPLVV 309
Query: 196 ---CKQVSYL---LKDVDPSI--REEFILSK-DAPFLKCFPVTPNN-----------HRV 235
K++SY L D+DP + E IL+ P + P P + ++
Sbjct: 310 FNLFKRISYQDTELLDMDPDVGRPERLILTHLLVPPVSIRPSVPMDGGSGSNEDDLTMKL 369
Query: 236 TEVPHAFSH--------EKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDK 287
+E+ H H E + ++W + Y ++ L ++ K
Sbjct: 370 SEILHINDHIKTNVDRLEMQAVVEDWDYLQASVAIYINSELPGLPL--------QMKPQK 421
Query: 288 SSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQV 347
R S ++ K N SG KR D R V++ DPN+ + E+ IP +
Sbjct: 422 PIRGLSQRLKGKTGRFRGNLSG----------KRVDFSGRTVISPDPNLNIDEVAIPQLI 471
Query: 348 AERLQISERLNSWNWERLSVCI----------SFRLLEKGELYVCRKGGLVRIRRIDALE 397
A + ER S+N +RL I ++ + GE + G R + L+
Sbjct: 472 AVTMTYPERCTSFNIQRLQKYIINGPDKHPGANYIIYPDGEKKWLKYGN--REKFAAELK 529
Query: 398 LGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDC 457
+GDI+ R L DGD++L NR PS+H S++ +V+P + + N C+P++ DFDGD
Sbjct: 530 IGDIVERHLIDGDVMLFNRQPSLHKLSIMCHKARVMPWRT-LRFNECVCTPYNADFDGDE 588
Query: 458 LHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQM 517
++ + PQ AR E L+ + LI ++G L++ QD LT+++L+ +
Sbjct: 589 MNIHCPQTEEARAEALILMGVTNNLITPRNGEPLVAATQDFLTSSYLISRRDAFYDRARF 648
Query: 518 QQLQMFCPH--------RFLSPDIFKISKDSVWSGKQLFSMLLPPDFE----YTFPSKD- 564
Q+ C H P I K + +W+GKQLF +LL P + F +
Sbjct: 649 TQM---CTHFADAYEHIDLPQPTIVKPIE--LWTGKQLFEVLLRPSVKSHVLVNFETNSR 703
Query: 565 VYISGGKLISAEGSSWLRDYE-------------GN---LFQYLIKRYRDKVLDFLYAAQ 608
Y + +G R+ E GN LF L++ + +
Sbjct: 704 TYTKNTYMCPRDGYVCFRNSELMCGSIDKSIIGGGNKDSLFHVLMRDFTPAIAANAMTRL 763
Query: 609 EVLC-EWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
LC +L +G ++ + D+ + ++K D I ++ A D C+ F
Sbjct: 764 AKLCARFLGDQGFSIGIPDVKPSPDLNAKK---DAI---IKRAHDKCDV----------F 807
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
L K S R + E+ A ++Q + + L NS L M
Sbjct: 808 LTEYK---SGRLAAASGCTVEQTLEARMNQ----ILSGIRDECGKLCVSELPHYNSPLIM 860
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
GSKG+ + + Q C+G Q R P+ + AK +
Sbjct: 861 ALCGSKGSNINIAQMIACVGQQ---IVNGTRIPNGFTNRTTPHFPHFSREPKAKGF---- 913
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRN 845
V NSF TG+ P E F H++ R+ G + RRLM + DL T YD TVR+
Sbjct: 914 -VGNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTQYDYTVRD 972
Query: 846 AYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
+ G IVQF Y +G E ++PV + A
Sbjct: 973 STGG-IVQFIYGDDGLDPAGMEAKERPVDFIRA 1004
>gi|154151472|ref|YP_001405090.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
gi|154000024|gb|ABS56447.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
Length = 879
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 206/890 (23%), Positives = 362/890 (40%), Gaps = 144/890 (16%)
Query: 49 LGLPNPTNECSSCGAKDRKA--CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI- 105
LG+ +P C +C D+KA C GHFG I+ ++H + I KLL C C +
Sbjct: 50 LGVIDPGLRCKTC---DQKASDCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCGRLL 106
Query: 106 --RKERQKGAGSSRK-----------EQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTA 152
E +K G+ ++ RVC +C + K++ + + +
Sbjct: 107 LSPDEVEKVVGTDEDLTGDQISEKDVKKERVCPHCGEQ--------QLKINFEKPTTFSE 158
Query: 153 IIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSI-R 211
+++E +K+ K P D + + P+ ++ ++P + R
Sbjct: 159 VMIEDGKKVEHK----------LTPADIRARLEKI-PDEDLIPLG--------INPRVAR 199
Query: 212 EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS 271
E+ + L PV P VT P + D+ T L ++ R E
Sbjct: 200 PEWTI------LTVLPVPP----VTMRPSIILENGQRSEDDLTHKLVDIIRINQRFKENQ 249
Query: 272 H------LVQDCLKISKLHLDKSSRKDSA---EVRQKKNIDISNSSGLRWIKD-----VV 317
+++D ++ + H+ + A R + + S KD +
Sbjct: 250 DAGAPQLIIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRLKGKDGRFRGSL 309
Query: 318 LGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG 377
GKR + R V++ DPN+ + E+G+P VA + I R+ +N E L + +
Sbjct: 310 SGKRVNFSSRTVISPDPNLSVTEVGVPRAVANEMTIPVRVTPYNLEELKQIVRNGPIRSS 369
Query: 378 ELYVCRKGGLVRI--RRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
C ++R RR+ D +E G + R L DGDIVL NR PS+H S
Sbjct: 370 VNAPCGANYVIRPDNRRLRLGADNLDTVADMIETGWTVERQLRDGDIVLFNRQPSLHRMS 429
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++A +KV+ +NP C P++ DFDGD ++ ++PQ AR E + L ++ + +++
Sbjct: 430 IMAHRIKVME-GRTFRLNPAVCPPYNADFDGDEMNLHVPQTEEARAEASILCSVQENILS 488
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRF--LSPDIFKISKDSVW 542
+ G ++ D ++ +L D + + + L + P R + P + W
Sbjct: 489 PRFGGPIIGGIHDHISGIFMLTHDMRWFT--KEEALYLLKPVRVDHMPPPGKTENGIEYW 546
Query: 543 SGKQLFSMLLPPDFEYTFPS---------------KDVY--ISGGKLISAE-GSSWLRDY 584
S KQ+FS +LP F + +D Y I GG+L S + +
Sbjct: 547 SNKQVFSQILPTALNMVFHASSCQNCDTCKKELCERDAYVRIMGGRLESGTIDKKAIGAF 606
Query: 585 EGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+G + +I++Y + +F+ ++ + + G + + D L+ + +D++
Sbjct: 607 DGQIVNRIIRQYGMKRATEFIDQVTKLSIRGIMIDGFSFGIDDEDLSKTEYGQ---IDDV 663
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAF 703
A D ++ D + M + E T +Q + A Q A
Sbjct: 664 LN--TAALDVSRRIKIYEDGQLE-PMPGRTVEETLEMQ-----IMQVLGKARDQTGQIAG 715
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
+H+ NS + M +G++G++L L Q + C+G Q R +
Sbjct: 716 RHL------------GLGNSAVVMAVSGARGSMLNLTQMAGCIGQQSVRGERIVRGYDDR 763
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DL 820
+ + R GD A +I +S+ GLNP E F H++ R+ D A
Sbjct: 764 TLPHFKR---GDRGADAHGFI-----AHSYKGGLNPTEFFFHAIGGRE-GLVDTAVRTSQ 814
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G L RR++ ++DL AYDGTVR G +I+QF Y + T GD
Sbjct: 815 SGYLQRRMINALQDLKVAYDGTVRTT-GGRIIQFQYGEDSTDPTKSAFGD 863
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/597 (25%), Positives = 256/597 (42%), Gaps = 100/597 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +R+ +
Sbjct: 343 VRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRG 402
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L++G + R + D D ++ NR P++H
Sbjct: 403 ANQYPGAKYIIRDNG----ERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFNRQPTLH 458
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N +P++ DFDGD ++ ++PQ++ + E++ L + +
Sbjct: 459 KMSMMCHKVKVLPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRM 517
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+I Q+ R ++ + QD+LTA + + V L Q+ L MF P P I K
Sbjct: 518 IITPQANRPVMGIVQDTLTAVRKMTKRDVFLDRGQVMNLLMFLPRWDGHVPQPAILK--P 575
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQLFS+++P PD E P K V I G LIS
Sbjct: 576 KPLWTGKQLFSLVIPGRTNCIRTHSTHPDEEDKGPYKWISPGDTKVLIEDGMLISGILCK 635
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + Y + +Y Q ++ WL + G ++ + D
Sbjct: 636 KTLGTSSGSLAHVVFMEYGWVIAGEMYGHIQTLVNNWLLLEGHSIGIGDT---------- 685
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ + Q + Q + + + + E + L E L Q
Sbjct: 686 ---------IADPQTYIDIQDTIKKAKHDVI------EVIEKAHNDDL--EPTPGNTLRQ 728
Query: 698 ASVDAFKHVFWDIQN----LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
+ + D ++ A K S N+ AM AGSKG+ + + Q C+G Q+
Sbjct: 729 TFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEG 788
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIH 805
P FR PH + Y P + VENS+L GL P E + H
Sbjct: 789 KRIPFGFRHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFH 832
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ M + YDGTVRN Q+VQ Y +G
Sbjct: 833 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQV-EQLVQLRYGEDG 888
Score = 41.2 bits (95), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 20 ISLGISTDTEKEKLSVMEIG-AVSEVT-----------NPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV + G SEVT +PR G + + C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTDGGIRYSEVTEGGRPKLGGLMDPRQGTIDRSARCQTC-AGNIS 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GHFG I+ + H FL K+L +C C
Sbjct: 76 ECPGHFGHIELAKPVFHIGFLVKTIKILRCVCFFC 110
>gi|328766444|gb|EGF76498.1| hypothetical protein BATDEDRAFT_14837 [Batrachochytrium
dendrobatidis JAM81]
Length = 1407
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 164/612 (26%), Positives = 269/612 (43%), Gaps = 90/612 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV-CISFRLLEKG 377
GKR D R V++ DPN+++ ++ +P +VA+ L ER+ +N ERL + I+ + G
Sbjct: 356 GKRVDFSGRTVISPDPNLRIDQVAVPERVAKVLTYPERVTPYNIERLRMNVINGPDVHPG 415
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV + + R R D L+ GD + R L D D+VL NR PS+H S+++
Sbjct: 416 ATYVAAQSTGMKKFLKFGNRNRTADELQYGDTVERHLQDDDVVLFNRQPSLHKLSIMSHF 475
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P + N C+P++ DFDGD ++ ++PQ AR E EL+ L+ ++G
Sbjct: 476 VKVRPWRTF-RFNECVCTPYNADFDGDEMNLHVPQTEEARAEAMELMGTKNNLVTPRNGE 534
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGKQ 546
L++ QD +TA++LL V Q Q+ + L+ D+ + ++W+GKQ
Sbjct: 535 PLIAATQDFITASYLLSRKDVFYDRSQFSQICSYLGDSLLNIDLPPPTILKPFALWTGKQ 594
Query: 547 LFSMLLPPDFE-----------YTF--PSKDVY-ISGGKLISAEGSSWLRDY---EGNLF 589
+F ++L P E TF KD + I+ GK + G + + +G LF
Sbjct: 595 VFGVMLRPSQESKIIINLETKCRTFDKDQKDRHGIAFGKSKTQAGHLFHPSFCPNDGYLF 654
Query: 590 QY---LIKRYRDKVL-----------------------DFLYAAQEVLCEWLSVRGMTVS 623
+ L+ DK + D + ++ WL+ +G ++
Sbjct: 655 FHNSELMSGVIDKAIIGDGNKKSMFYVVLRDYGPPAAADCMNKIAKLSARWLANQGFSIG 714
Query: 624 LSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE 683
++D+ + K + E Y + + + S N L + ++L
Sbjct: 715 INDVQPGDRLRTEKEITVEKGY--------TDCDETIALSRQNLLPNQPGCNQEQTL--- 763
Query: 684 HLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHS 743
E + S LS+ D + F ++ +K N+ L M GSKG+ + + Q
Sbjct: 764 ----ESKLSGILSKIRDDVGQVCFQEL--------NKYNAPLIMSLCGSKGSKINVSQMV 811
Query: 744 LCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECF 803
C+G Q R P+ + T AK + V NSF +GL+P E
Sbjct: 812 ACVGQQIISGS---RIPNGFGDRSLPHFAKNSKTPPAKGF-----VGNSFYSGLSPTEFL 863
Query: 804 IHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
H+V+ R+ G + RRLM + DL YD +VR++ G IVQF Y +G
Sbjct: 864 FHAVSGREGLVDTAVKTAETGYMQRRLMKALEDLVCHYDLSVRDS-GGGIVQFRYGDDGL 922
Query: 862 STPTGEIGDQPV 873
P E + PV
Sbjct: 923 DPPNIEGSELPV 934
Score = 42.4 bits (98), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 20 ISLGISTDTEKEKLSVMEIGA-----VSEVTNP---------RLGLPNPTNECSSCGAKD 65
I G+ + + ++LS++E+ VS+ P RLG + + C +CG +
Sbjct: 17 IDFGVLSAQDAKQLSILELHQRDLYDVSKNNRPPAKFGALDRRLGTADKSIPCETCG-ET 75
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
+ C GHFG I+ + H + + +L +IC C + + Q
Sbjct: 76 MQDCVGHFGIIRLVLPVFHIGYFKLMITVLQNICKSCSCVLIDEQ 120
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 152/591 (25%), Positives = 267/591 (45%), Gaps = 90/591 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ L E+G+P +A + E + +N +RL R
Sbjct: 323 IRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIDRLQ-----R 377
Query: 373 LLEKGE---------LYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVL 413
L+E G Y+ R+ G +R+D LE G + R + +GD+VL
Sbjct: 378 LVENGPHPPPGETGARYIIREDG----QRLDLRFLKKSSEKRLEYGYKVERHMVNGDVVL 433
Query: 414 INRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELT 473
NR PS+H S++ V+++P S+ +N P++ DFDGD ++ ++PQ+ R E+
Sbjct: 434 FNRQPSLHKMSIMGHRVRIMPYSTF-RLNLSVTPPYNADFDGDEMNMHLPQSYETRAEVK 492
Query: 474 ELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLS 530
EL+ + K +++ Q+ + ++++ QD+L L+ + ++ + M+ +
Sbjct: 493 ELMMVPKMIVSPQANKPVMAIVQDTLLGCRLITKRDTFITKDVFMNIIMWLEDWDGKVPK 552
Query: 531 PDIFKISKDSVWSGKQLFSMLLPP--------------DFEYTFPSKDVYISGGKLISAE 576
P I K +W+GKQ+FSM+LP D ++ V I G+L++
Sbjct: 553 PAILK--PQPLWTGKQVFSMMLPKVNLLRTSAWAKDSDDMAFSVDDTGVRIEQGELLTGT 610
Query: 577 -GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE-WLSVRGMTVSLSDLYLASHSC 634
+ G L + + L + + L W+ G TV ++D
Sbjct: 611 LCKKTMGSGGGGLIHVTWEEWGPIAARGLISQTQTLVNYWVLHHGFTVGIAD-------- 662
Query: 635 SRKILMDEIFYGLRE--AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
I DE + + + + ++++ + N L + + ++Q S+E++ +
Sbjct: 663 --TIADDETMFSINNTITKAKADVKEVIKLAQNNEL----ELQPGMTMQQ---SFEQKVN 713
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSL 752
L++A +A N A N++ M AGSKG+ L + Q C+G Q+
Sbjct: 714 QILNKARDNA--------GNSAQNSLMDTNNVKMMVTAGSKGSFLNISQMIACVGQQNVE 765
Query: 753 APLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
R P+ D ++ + VENS+L GL P E F H++ R+
Sbjct: 766 GK---RIPYGFKGRTLPHFSKDDFGPESRGF-----VENSYLRGLTPQEFFFHAMGGRE- 816
Query: 813 SFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D A G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 817 GLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGD-VIQFLYGEDG 866
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 157/611 (25%), Positives = 271/611 (44%), Gaps = 97/611 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A+ L E + +N + + +
Sbjct: 355 IRGNLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRG 414
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G R+D L+ G + R + D D+++ NR P++H
Sbjct: 415 NNQYPGAKYIIRDNG----ERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLH 470
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N +P++ DFDGD ++ ++PQ++ ++ E+TE++ + +
Sbjct: 471 KMSMMGHRVKILPWSTF-RLNLSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMVPRN 529
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
++ QS + ++ + QDSLTA + V + M L M+ P + P I K
Sbjct: 530 IVTPQSNKPVMGIVQDSLTAVRKFTKRDVFIEKDAMMNLLMWIPTWDGKIPQPAILK--P 587
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKL---ISAEGSSWLRD 583
+W+GKQ+ SM++P PD E + P K +IS G I + S L
Sbjct: 588 RPLWTGKQICSMIIPGNVNVIRTHSTHPDDEDSGPYK--HISPGDTKARILCKKS--LGT 643
Query: 584 YEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
G+L + + Y+ Q V+ WL + G ++ + D S + DE
Sbjct: 644 SSGSLIHIIAMELGHDIARMFYSDVQCVVNNWLLLEGHSIGIGDCIADSDT------YDE 697
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQAS 699
I ++A+ +++ +H + L + ++ + + L+ + ++ +Q S
Sbjct: 698 IQRATKKAKK--EVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDCRDKTGGSAQKS 755
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLS 756
+ F N+ AM AGSKG+ + + Q +G Q+ P
Sbjct: 756 LSEF------------------NNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFG 797
Query: 757 FR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRD 811
FR PH + Y P + VENS+L GL P E F H++ R+
Sbjct: 798 FRHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 841
Query: 812 SSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ M L AYDGTVRN+ NQ++Q Y +G E
Sbjct: 842 GLIDTAVKTSETGYIQRRLVKAMEGLSVAYDGTVRNS-NNQLIQLRYGEDGMDGIAIEFQ 900
Query: 870 DQPVGSLSACA 880
+ P S A
Sbjct: 901 NMPTMRPSKTA 911
Score = 43.1 bits (100), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 22 LGISTDTEKEKLSVMEIG--AVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFP 79
+ ++TD + ME G ++ + +PR G + + C +C A + C GHFG I+
Sbjct: 30 MSVTTDGGVKYSETMEGGRPKLNGLMDPRQGTIDRFSRCQTC-AGNMTECPGHFGHIELA 88
Query: 80 FTILHPYFLSDIAKLLNSICPKCKT----IRKERQKGAGSSRKEQPR 122
+ H F++ I K L +C C + R K S QPR
Sbjct: 89 KPVFHVGFMTKIVKTLRCVCFYCSKLLVDLNNPRVKEILSKSHGQPR 135
Score = 40.0 bits (92), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + ++ IS G + HL ++ + ++ G
Sbjct: 1347 VDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHL 1406
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + + S F + + AA D L+G + + GK+P +
Sbjct: 1407 MAITRHGINRQEVGALMRSSFEETV-----DVLMDAAAHAETDYLRGVSECIIMGKLPRI 1461
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1462 GTGS-FDLMLDAE 1473
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/579 (27%), Positives = 256/579 (44%), Gaps = 80/579 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N E+L+ + E
Sbjct: 352 LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTFPETVTPYNIEKLTGYVKNGPNEH 411
Query: 376 KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G YV R G L +R AL+L G + R L DGD ++ NR PS+H S++
Sbjct: 412 PGAKYVIRSDGTRIDLRHHKRAGALQLEYGWKVERHLIDGDFIIFNRQPSLHKESMMGHR 471
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 472 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNG 530
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
L+ + QD+L + L L+ Q+ + M+ P P I+K W+GKQ
Sbjct: 531 PLMGIVQDTLAGVYKLTRRDTFLTKEQVMDVMMWVPDWDGVIPLPAIWK--PRPRWTGKQ 588
Query: 547 LFSMLLPPDF---------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
+ SM++P E P KD + I G+LI + G +L
Sbjct: 589 IISMVIPSIINLAMGADGEERDAPLKDEGLLIQQGQLIYGLLTKKSVGAAGGGIIHLC-- 646
Query: 596 YRD----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCS--RKILMDEIFYGLRE 649
Y + +DFL Q V+ WL G ++ + D + K + DE
Sbjct: 647 YNELGPSGAMDFLNGCQRVVNYWLLHCGHSIGIGDTIPDDKTIELIEKHINDEKAV---- 702
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWD 709
++ ++ + L E ++E + SAAL+ A A
Sbjct: 703 ---VAKLTKMATENQLEALPGMNVRE----------TFENKVSAALNTARDKAGTSTEKS 749
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHEL 763
+++L N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 750 LKDL--------NNAVTMARSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH-- 799
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + A+ + VENS+L GL P E F H++ R+
Sbjct: 800 -------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAET 847
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D YDGTVRN+ G+ I+QF Y +G
Sbjct: 848 GYIQRRLVKALEDAEAHYDGTVRNSLGD-IIQFVYGEDG 885
Score = 44.7 bits (104), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C ++ C GHFG I+ + HP F+ KLL +C C
Sbjct: 55 LNDPLLGSVDRQFKCKTC-TENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCS 113
Query: 104 TIRKERQKGA 113
+ +R A
Sbjct: 114 KVLADRSDPA 123
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/129 (18%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR++ +++ +GI+A + L ++ G + HL ++ + ++ G
Sbjct: 1347 VDTTRTYTNDLYQVVDVFGIEAARSALMAELTQVLAFDGSYVNHRHLALLVDVMTYRGSI 1406
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ G+ + + + ++ F ++AA G +D+ +G + + G++ +
Sbjct: 1407 AAVTRHGI-----NRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPM 1461
Query: 1252 GTGGHFDII 1260
GT GHF+++
Sbjct: 1462 GT-GHFEVL 1469
>gi|326469885|gb|EGD93894.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1444
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 163/607 (26%), Positives = 263/607 (43%), Gaps = 108/607 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L CI G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 431
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G R+ + L GDI+ R L DGDIVL NR PS+H S+++
Sbjct: 432 ANYLIKEGNSFRLFLKYGNLNMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---QMFCPHRFLSPDIFKISKDSVWSGKQ 546
+++ QD +TAA+LL Q+ + RF P I +W+GKQ
Sbjct: 551 PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610
Query: 547 LFSMLLPPDFEYTFPSK---DVYISGGKLISA------EGSSWL--RDYE---------- 585
+FS+L+ P+ + P K D KL+ E WL R+ E
Sbjct: 611 VFSVLMRPNKDC--PVKVNLDAACRQLKLVKGQPRDLCENDGWLCIRNSEMLCGVADKST 668
Query: 586 ------GNLFQYLIKRYRDKVLDFLYAA--------QEVLCEWLSVRGMTVSLSDLYLAS 631
N+F ++I+R DF YAA ++ WL+ +G ++ ++D+Y
Sbjct: 669 IGAGKKDNIF-FVIQR------DFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPG- 720
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQ----LMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
E L++ FQQ + S M DS T
Sbjct: 721 ----------ESLVRLKDTLINTAFQQCDDLITAASKEKPQMGKSDSRQT---------A 761
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E + + L++ A ++ ++ SK N+ L M GSKG+ + + Q +G
Sbjct: 762 ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMVAVVG 813
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q + + + + R ++ + V NSF +GL P E H++
Sbjct: 814 QQSIENARVSKGFQDRTLPHFAR--------HSQHALAKGFVRNSFFSGLTPTEFLFHAM 865
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------N 857
+ R+ G ++RRLM + DL T YD TVR++ + I+QF Y N
Sbjct: 866 SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDS-SSFIIQFQYGDDQLDPVN 924
Query: 858 IEGTSTP 864
+E ++ P
Sbjct: 925 MEASAKP 931
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ N ++ C +CG D + C GHFG+++ H + ++L IC C I
Sbjct: 66 DPRLGISNKSDTCETCGG-DLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKI 124
Query: 106 -----------RKERQKGAGSSRKEQ--PRVCKYCVRNPAQWY 135
++ R+ G + R+ Q R+ C + P +Y
Sbjct: 125 LLPEDERRSYLKELRRPGLDNLRRMQINKRINVRCRKTPVCYY 167
Score = 48.5 bits (114), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I+ R+ +++ GI+A + + S +S G I P H+ ++A+ ++ G
Sbjct: 1281 DGIEGHRTRTNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKG 1338
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D +QG + + GK
Sbjct: 1339 EVLGITRFGLAKIR-----DSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTI 1393
Query: 1250 SVGTG 1254
S+GTG
Sbjct: 1394 SLGTG 1398
>gi|113957418|gb|ABI49110.1| RNA polymerase II largest subunit [Letrouitia domingensis]
Length = 998
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 149/575 (25%), Positives = 257/575 (44%), Gaps = 74/575 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 257 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEH 316
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ N H S+
Sbjct: 317 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFMIFNGXXXXHKESM 372
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+++L + +++
Sbjct: 373 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVSP 431
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q ++ + QD+L + + V LS Q+ + ++ P + P + W+G
Sbjct: 432 QRNWPIMGIVQDTLCGIYKICRRDVFLSEEQVMNILLWVPDWDGVIPQPAILKPRPRWTG 491
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLI------SAEGSSWLRDYEGNLF 589
KQ+ S++LPP Y K + + GG++I A G+S +G +
Sbjct: 492 KQIISLVLPPTLNYLQLDKSGFSPINDAGMLVDGGEVIFGLFRKQAVGAS----KQGIIH 547
Query: 590 QYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
++ + L+F AQ V+ WL G ++ + D RK + G+
Sbjct: 548 IIFNEKGPEAALNFFNGAQTVVNYWLLHNGFSIGIGDTI-----PDRKTIQ-----GIEN 597
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVF 707
A + + + ++ SL G + ++E + AAL+QA +A
Sbjct: 598 AVSEQKKEVIEITRKAT-------ADELESLPGMSIRETFESKVQAALNQARENAGTKTQ 650
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+++L N+ + M +GSKG+ + + Q + +G Q A R P
Sbjct: 651 ESLKDL--------NNAVQMALSGSKGSTINISQMTAIVGQQ---AVEGKRIPFGFKYRT 699
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 700 LPHFTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 754
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + D+ YDGTVRN+ G+ +VQF Y +G
Sbjct: 755 RRLVKALEDVMAKYDGTVRNSLGD-VVQFLYGEDG 788
>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1706
Score = 175 bits (443), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 154/581 (26%), Positives = 266/581 (45%), Gaps = 67/581 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
I+ ++GKR D R V+T DPN+ + ++G+P VA L + R+ ++N LS ++
Sbjct: 272 IRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPIRVTAFNQAELSALVANG 331
Query: 372 RLLEKGELYVCRKGGL-VRIRRIDA-----LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G ++ R G + +R + L G I+ R L D DIVL NR PS+H S+
Sbjct: 332 PTMHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERHLRDDDIVLFNRQPSLHKMSI 391
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ KVL S+ +N C SP++ DFDGD ++ ++PQ + AR E ++ + +++
Sbjct: 392 MGHKAKVLDWSTF-RLNLSCTSPYNADFDGDEMNLHVPQGLAARAEAELMMLSSRVIVSG 450
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS R ++S+ QDSL A + + SV + + M+ P + P + K + +W
Sbjct: 451 QSNRPVMSIVQDSLLATQKMTKRSVFIEKDLCYNMLMWVPQWNGQIPIPAVIKPKE--LW 508
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLD 602
+GKQL S +LP + SK + G A G + + N++ +L+ + D
Sbjct: 509 TGKQLLSTILP---KVNLKSK---ANNGPGKDARGKNMPNTF--NMYDHLV-----TIQD 555
Query: 603 FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVD 662
E+L + + + S+ L H+ + +E + + Q N L
Sbjct: 556 -----GELLEGTVDKKTIGSSMGGLI---HTAWLDVGFEETARFMNQIQQLVNHWILQYS 607
Query: 663 SHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS------------VDAFKHVFWDI 710
+ + + D+++ R ++ ++Q + Q +++F+ + +
Sbjct: 608 FSIGAIDAVADADTMRQIESTIDKAKRQVQDLVRQGQLGELEIQPGRTMIESFEQLVNKV 667
Query: 711 QNLAYKYGSKD--------NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
N A + K NS+ AM AGSKG+ + + Q C+G Q+ R P+
Sbjct: 668 LNTARDHAGKSAQSSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGK---RIPYG 724
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---D 819
D ++ + VENS+L GL+P E F H++ R+ D A
Sbjct: 725 FKKRTLPHFSKDDIGSESRGF-----VENSYLRGLSPQEFFFHAMGGRE-GLIDTACKTA 778
Query: 820 LPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGT+R + G QIVQF Y +G
Sbjct: 779 ETGYIQRRLVKAMETVMARYDGTLRTSSG-QIVQFLYGEDG 818
Score = 41.2 bits (95), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D TRS ++I +A GI+ L+ L + IS G + HL + + ++
Sbjct: 1290 VDYVDGTRSVSNDIVEVFVALGIEGVRGALLSELRNVISFDGSYVNYRHLACLVDVMTMQ 1349
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + ++ G+ + + P ++A F + AA + L+G + + G++
Sbjct: 1350 GHLMAIDRHGI-----NRVDTGPLLRASFEETVDMLMDAAVYAEEEILKGVTENIMMGQL 1404
Query: 1249 PSVGTG 1254
VGTG
Sbjct: 1405 ARVGTG 1410
>gi|302817897|ref|XP_002990623.1| hypothetical protein SELMODRAFT_1456 [Selaginella moellendorffii]
gi|300141545|gb|EFJ08255.1| hypothetical protein SELMODRAFT_1456 [Selaginella moellendorffii]
Length = 350
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 180/330 (54%), Gaps = 22/330 (6%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV--------- 367
+L K C ++TGD + ++EI IP +++ ++ + ER+ S+N ++L
Sbjct: 1 ILSKMTQYCAIALLTGDAYLGVEEILIPDEISRQVTLPERVTSFNADKLQAIVNDLQVCL 60
Query: 368 ----CISFRLLEKGELYVCRKGGLVRIRRIDA----LELGDIIYRPLTDGDIVLINRPPS 419
C F E ++ + G +R A LE+G +++RP+ DGD+V ++R P+
Sbjct: 61 ACLYCFGFDFREYQVGFIEQNGVTCDLRGQSAERRQLEIGAVVHRPVRDGDLVFVSRHPA 120
Query: 420 IHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALD 479
++ HS+IALT ++ P S INPL CSP GDFDGD LH Y PQA ARVE EL+ L
Sbjct: 121 VYKHSVIALTARIHPGKSF-RINPLVCSPLKGDFDGDRLHVYFPQAEDARVETRELMGLK 179
Query: 480 KQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKD 539
+Q SG ++SL QD L AA++L+ + Q+QQL + R+ PD +
Sbjct: 180 QQFQALSSGNPVISLTQDMLVAAYMLVSRHSFFTAPQIQQLGLHA-DRWSLPDPAIVKPR 238
Query: 540 SVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYR- 597
++W+G Q F +LLP + ++ V IS G+L++A + SWL +L + + +++
Sbjct: 239 ALWTGFQAFGLLLPSELAFS-TRTGVLISDGELVTAGDDGSWLGGGTDSLLRAIHEKFGV 297
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDL 627
+ + +L + +L E+L + G ++ L D
Sbjct: 298 AEAIAYLDSCCSMLKEFLHIEGFSIGLGDF 327
>gi|157741622|gb|ABV69516.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 999
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 166/632 (26%), Positives = 276/632 (43%), Gaps = 102/632 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGDI+L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLKGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMD 641
+ + F AQ V+ WL G ++ + D + + K+ +D
Sbjct: 550 GSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKLEVD 609
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
R+ + Q+ V +E +L G ++ ++E + SAAL+ A
Sbjct: 610 ------RKKAEVERITQMAV------------AEDLEALPGMNVRETFESKVSAALNGAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 652 DEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G I
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD--GAHIEK 805
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLL 902
Q V A+S+AA+ + + L+E+ L+
Sbjct: 806 QRV---DVIAMSDAAFEKQFR-VDLMESKKLV 833
>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
Length = 999
Score = 174 bits (442), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 165/632 (26%), Positives = 275/632 (43%), Gaps = 102/632 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGD++L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNAPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMD 641
+ + F AQ V+ WL G ++ + D + + K +D
Sbjct: 550 GSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKREVD 609
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
R+ + Q+ V +E +L G ++ ++E + SAAL+ A
Sbjct: 610 ------RKKAEVERITQMAV------------AEDLEALPGMNVRETFESKVSAALNGAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A A + KD N+ + M +AGSKG + + Q + +G Q P
Sbjct: 652 DEA---------GTATENSLKDINNAIQMARAGSKGTTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G I
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD--GAHIEK 805
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLL 902
Q V A+S+AA+ + + L+E+ L+
Sbjct: 806 QRV---DVIAMSDAAFEKQFR-VDLMESKKLV 833
>gi|157741492|gb|ABV69451.1| RNA polymerase II largest subunit, partial [Dermatocarpon miniatum]
Length = 999
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 263/594 (44%), Gaps = 104/594 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL++G + R + DGD++L NR P
Sbjct: 322 PEMHPGARYIIREHN----ERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP S + + G S L +G L L +
Sbjct: 488 RPRWTGKQMISMVLPPALNLVRIDGKSSQSPSERFAPAGDSGLFVADGQLLFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGVIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGD------------TV 595
Query: 641 DEIFYGLREAQDTCNFQQLMVD---SHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAAL 695
+I +T N +L VD + + + + +E +L G ++ ++E + SAAL
Sbjct: 596 PDI--------NTVNAIKLEVDKKKAEVERITESAVAEDLEALPGMNVRETFESKVSAAL 647
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---S 751
+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 648 NGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + +K + VENS+L GL P E F H++
Sbjct: 699 RIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMA 744
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 745 GREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
Length = 1756
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 155/587 (26%), Positives = 254/587 (43%), Gaps = 93/587 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N RL + E
Sbjct: 354 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHQLVENGPNEH 413
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 414 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 469
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 470 MGHQVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSP 528
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ + + + L ++ P+ P I K W
Sbjct: 529 QKNGPLMGIVQDSLAGAYKMCRRDTFIEKEMVMNLMLWVPNWDGVIPQPAILK--PRPRW 586
Query: 543 SGKQLFSMLLPPDFEYTFP-SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR---- 597
+GKQ+ SM++P + P S D + + G L G L L+K+
Sbjct: 587 TGKQIISMVIPKEISLNSPESADALDNADIPLKDTG---LLIQSGELLYGLLKKKNIGSA 643
Query: 598 --------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ + FL Q+V+ WL G ++ + D +
Sbjct: 644 AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQT---------- 693
Query: 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVD 701
+ + Q + Q+ V L + + +L G ++ ++E + S AL+ A
Sbjct: 694 ---IEKVQAHIDTQKAEVAR----LTAQATANELEALPGMNVRATFENKVSMALNSARDQ 746
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFR 758
A +++ N+ + M ++GSKG+ + + Q + +G Q P F+
Sbjct: 747 AGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFK 798
Query: 759 F---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
+ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 799 YRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLID 844
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ +VQF Y +G
Sbjct: 845 TAVKTAETGYIQRRLVKALEDLSAQYDGTVRNSLGD-VVQFLYGEDG 890
Score = 43.1 bits (100), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQTMSDCPGHFGHIELAKPVYHPGFIRKVKKILEMVCHNCS 113
Query: 104 TIR 106
+R
Sbjct: 114 KLR 116
>gi|149794933|gb|ABR31762.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 1003
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 160/620 (25%), Positives = 269/620 (43%), Gaps = 99/620 (15%)
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
+LDK+ K R K+I + ++ ++GKR D R V+TGDPN+ L E+G+
Sbjct: 237 NLDKAQHKSG---RPIKSIRARSKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 293
Query: 344 PCQVAERLQISERLNSWNWERLSVCISFRL-LEKGELYVCRKGGLVRIRRID-------- 394
P +A L E + +N RL ++ + G Y+ R+ RID
Sbjct: 294 PRSIARTLTYPETVTRFNISRLKELVTRGPEMHPGARYIIRENN----ERIDLRYHKDTA 349
Query: 395 --ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
AL++G + R + DGD++L NR PS L V+V+P S+ +N +P++ D
Sbjct: 350 GIALKVGWKVERHIMDGDVILFNRQPS-----LXXXRVRVMPYSTF-RLNLSVTTPYNAD 403
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGD ++ ++PQ+ +R EL +L + +++ Q L+ + QD+L + + V L
Sbjct: 404 FDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 463
Query: 513 SHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISG 569
S + + ++ P P IFK W+GKQ+ SM+LPP
Sbjct: 464 SREAVMNIMLWVPDWDGVIPQPAIFK--PRPRWTGKQIISMVLPPALNLVRIDGKASQPP 521
Query: 570 GKLISAEGSSWLRDYEGNLFQYLIKRY------------------RDKVLDFLYAAQEVL 611
G+ + G S L +G L L + + + F AQ V+
Sbjct: 522 GERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVV 581
Query: 612 CEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSA 671
WL G ++ + D + + ++ D + + + +
Sbjct: 582 NYWLLHNGFSIGIGDTVPDVGTVEK----------IKSEVDKKK-------AEVERITQS 624
Query: 672 KDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMF 728
+E +L G ++ ++E + SAAL+ A +A A + KD N+ + M
Sbjct: 625 AVAEDLEALPGMNVRETFESKVSAALNGARDEA---------GTATENSLKDINNAIQMA 675
Query: 729 KAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKS 782
+AGSKG+ + + Q + +G Q P F++ PH D + +K
Sbjct: 676 RAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPH---------FAKDDYSAASKG 726
Query: 783 YIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYD 840
+ VENS+L GL P E F H++ R+ G + RRL+ + ++ YD
Sbjct: 727 F-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYD 781
Query: 841 GTVRNAYGNQIVQFSYNIEG 860
TVR++ GN IVQF Y +G
Sbjct: 782 STVRDSRGN-IVQFIYGEDG 800
>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
Length = 1150
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 196/829 (23%), Positives = 343/829 (41%), Gaps = 140/829 (16%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKM---------LVSPHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G + P
Sbjct: 127 MKSRGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE--LSHLVQDCLK 279
PV P R V + + + +K + R + +H++Q+ +K
Sbjct: 241 IVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIK 300
Query: 280 ISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVT 331
+ + H+ D QK K I I+ ++GKR D R V+T
Sbjct: 301 MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT 360
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 361 PDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG---- 416
Query: 391 RRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S+
Sbjct: 417 ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF-R 475
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
+N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + QD+LT
Sbjct: 476 MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLT 535
Query: 501 AAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP---- 553
A + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 536 AVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK--PRPLWTGKQIFSLIIPGNVN 593
Query: 554 --------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-LIKRY 596
PD E P K + K++ G L G+L ++
Sbjct: 594 MIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELG 653
Query: 597 RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNF 656
D F Q V+ WL G ++ + D + +EI +++A+D
Sbjct: 654 HDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQT------YNEIQQAIKKAKDDV-- 705
Query: 657 QQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL--- 713
+N + A + E E L Q + + D ++
Sbjct: 706 --------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARDKTGG 746
Query: 714 -AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR 758
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR
Sbjct: 747 SAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFR 795
>gi|443729218|gb|ELU15202.1| hypothetical protein CAPTEDRAFT_219447 [Capitella teleta]
Length = 1381
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 159/597 (26%), Positives = 259/597 (43%), Gaps = 78/597 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LEKG 377
GKR D R V++ DPN+++ ++ +P VA+ L ER+N N + ++ G
Sbjct: 352 GKRVDFSGRTVISPDPNMRIDQVAVPVHVAKILTYPERVNYANLSLMKKLVTNGCDSHPG 411
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ ++G + R + + L++GDI+ R L D DIVL NR PS+H S+ A
Sbjct: 412 ANFILQRGTNLKKFLKYGNRAKIANELKVGDIVERHLLDRDIVLFNRQPSLHKLSIQAFY 471
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV+P N CC+PF+ DFDGD ++ ++PQ A+ E L+ ++ ++G
Sbjct: 472 AKVMP-HRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAIVLMGSKSNIVTPRNGE 530
Query: 490 NLLSLGQDSLTAAHLLMEDSVL--------LSHLQMQQLQMFCPHRFLSPDIFKISKDSV 541
L++ QD +T +LL + V L+ + Q+ P IFK K +
Sbjct: 531 PLIAAIQDFITGGYLLTQKDVFFDRAKACQLASAILSQMDRSTKVELPPPCIFKPLK--M 588
Query: 542 WSGKQLFSMLLPP-------------------DFEYTFPSKDVYISGGKLISA--EGSSW 580
WSGKQ+FS++L P D + V + L++ + +
Sbjct: 589 WSGKQIFSLILRPHQSSNVKINLRTKGKNYTKDEDLCIKDSFVVVHNSDLLAGCMDKGTL 648
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ N+F L++ Y ++ + LC +LS RG ++ + D+
Sbjct: 649 GSGSKNNVFYLLLRDYGEEAAAVSLSRLARLCPAYLSNRGFSIGIGDVTPG--------- 699
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ-RSAALSQA 698
GL +A+ Q L+ + + ++ + R S E+ S L +
Sbjct: 700 -----LGLLQAK-----QSLLDAGYSKCIEYIQELKENRLKSQPGCSPEETLESMILKEL 749
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
SV + N + K NS L M GSKG+ + + Q C+G Q A R
Sbjct: 750 SV-----IRDHAGNACLRELHKTNSPLTMAVCGSKGSFINISQMIACVGQQ---AISGKR 801
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ A A+ + V NSF +GL P E F H++ R+
Sbjct: 802 VPNGFEDRALPHFERHAKDPAARGF-----VSNSFYSGLTPTEFFFHTMGGREGLVDTAV 856
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G + RRL+ + DLC+ YD TVRN+ G +IVQF + +G E D+PV
Sbjct: 857 KTAETGYMQRRLVKSLEDLCSQYDLTVRNSMG-EIVQFVFGGDGLDPSCMEGKDKPV 912
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 159/582 (27%), Positives = 261/582 (44%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL++ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTMLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHVIDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ +Q
Sbjct: 452 KMSMMAHKVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L L + Q+ + + P +P I K
Sbjct: 511 IVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIELGQVLNMLYWVPDWDGVIPTPAILK--P 568
Query: 539 DSVWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQL S+ +P KD + I G + + G
Sbjct: 569 KPLWTGKQLLSVAIPKGIHLQRFDEGTTLLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V L++ Q+V+ W G + + D + M +I
Sbjct: 629 LIHVVTREKGPQVCATLFSNIQKVVNYWFLHCGFSTGIGDTIADGQT------MRQITEA 682
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ + + ++ N L++AK + R S+E L++A A +
Sbjct: 683 IAEAK--VKVEDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGR-- 731
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
LA + N + M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 732 ------LAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 785
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 786 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGEDG 872
Score = 42.4 bits (98), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG ++ +PRLG + + +C +C + C GHFG I+ + H
Sbjct: 39 ETMDETQTRAKIGGLN---DPRLGSIDRSLKCQTC-QEGMNECPGHFGHIELAKPVFHIG 94
Query: 87 FLSDIAKLLNSICPKC 102
F+S I K+ +C C
Sbjct: 95 FISKIKKVCECVCMHC 110
>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
Length = 1761
Score = 174 bits (442), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 157/594 (26%), Positives = 260/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD NI L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 40.8 bits (94), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.8 bits (94), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R ++ D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLVED-----DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|226876237|gb|ACO89439.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
TRN531]
Length = 983
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 156/603 (25%), Positives = 268/603 (44%), Gaps = 74/603 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L ER+ + N E+L C+
Sbjct: 250 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPERVTNKNVEKLKKCVMNG 309
Query: 373 LLE-KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G I+ R + DGD+
Sbjct: 310 PTEHPGARYVIRDSG----ERIDLRHHKRASEMTLQNGWIVERHIQDGDVXXX----XXX 361
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL L +
Sbjct: 362 XXXXXXXRVRVMPYST-FRLNLSVTAPYNADFDGDEMNLHVPQSQESRAELQNLCMVPLN 420
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + VLL+ Q+ + ++ P + P I
Sbjct: 421 IVSPQRNSPLMGIIQDTLCGVYKICRRDVLLTKEQVMDIMLWVPDWDGVIPQPAIIKPTP 480
Query: 541 VWSGKQLFSMLLPPDF---EYTFPSKDVYI--SGGKLISAEGS--------SWLRDYEGN 587
W+GKQ+FSM+LPP +D Y+ S LI EG ++ G
Sbjct: 481 RWTGKQMFSMVLPPTLNLERLDAKGEDPYVPESDTGLIVLEGEIMFGVLSKKYVGAGAGG 540
Query: 588 LFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + + + L F AQ V+ WL G ++ + D + +
Sbjct: 541 IIHTIYNEFGWETALAFFNGAQTVVNYWLLHNGFSIGIGDTVPDPDTVQK---------- 590
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+++A DT + + + A+D E + + ++E + +L+QA A
Sbjct: 591 IQDAVDTKKKEVVELQKK----AEAEDLEPSPGMNVRQ-TFESKVMNSLNQARDQAGAAT 645
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
+++L N+ + M +AGSKG+ + + Q + +G Q A R P
Sbjct: 646 ENSLKDL--------NNAITMARAGSKGSTINIAQMTAIVGQQ---AVEGKRIPFGFKYR 694
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
+ D + ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 695 SLPHFTKDDYSASSRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 749
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEA 884
RRL+ + ++ YD TVR+++GN +VQF Y +G G I +Q V ++ +SE
Sbjct: 750 QRRLVKALEEVTVKYDSTVRDSHGN-VVQFLYGEDGLD--GGHIENQKVDIIT---MSEK 803
Query: 885 AYS 887
A++
Sbjct: 804 AFN 806
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 155/610 (25%), Positives = 258/610 (42%), Gaps = 100/610 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+++ ++G+P +A+ + E + +N +R+ +
Sbjct: 261 VRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRG 320
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L++G + R + D D ++ NR P++H
Sbjct: 321 ANQYPGAKYIIRDNG----ERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFNRQPTLH 376
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VKVLP S+ +N +P++ DFDGD ++ ++PQ++ + E++ L + +
Sbjct: 377 KMSMMCHKVKVLPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRM 435
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+I Q+ R ++ + QD+LTA + + V L Q+ L MF P P I K
Sbjct: 436 IITPQANRPVMGIVQDTLTAVRKMTKRDVFLDRGQVMNLLMFLPRWDGHVPQPAILK--P 493
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQLFS+++P PD E P K V I G LIS
Sbjct: 494 KPLWTGKQLFSLVIPGRTNCIRTHSTHPDEEDKGPYKWISPGDTKVLIEDGMLISGILCK 553
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + Y + +Y Q ++ WL + G ++ + D
Sbjct: 554 KTLGTSSGSLAHVVFMEYGWVIAGEMYGHIQTLVNNWLLLEGHSIGIGDT---------- 603
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ + Q + Q + + + + + + + E L Q
Sbjct: 604 ---------IADPQTYIDIQDTIKKAKHDVIEVIEKAHND--------DLEPTPGNTLRQ 646
Query: 698 ASVDAFKHVFWDIQN----LAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH--- 750
+ + D ++ A K S N+ AM AGSKG+ + + Q C+G Q+
Sbjct: 647 TFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEG 706
Query: 751 SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIH 805
P FR PH + Y P + VENS+L GL P E + H
Sbjct: 707 KRIPFGFRHRTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFH 750
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ M + YDGTVRN Q+VQ Y +G
Sbjct: 751 AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQV-EQLVQLRYGEDGLDA 809
Query: 864 PTGEIGDQPV 873
E P
Sbjct: 810 THVEFQTMPT 819
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPSGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NMKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG ++ +PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLN---DPRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit [Neogonodactylus oerstedii]
Length = 624
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 157/611 (25%), Positives = 257/611 (42%), Gaps = 110/611 (18%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE------LY 380
R V+T DPN+++ ++G+P +A+ L E + +N ++ L+++G Y
Sbjct: 3 RTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNMTKM-----MELVKRGNNQYPGAKY 57
Query: 381 VCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
+ R G RID L+ G + R +TDGD+V+ NR P++H S++ V
Sbjct: 58 IVRDNGA----RIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQPTLHKMSMMGHRV 113
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP S+ +N SP++ DFDGD ++ ++PQ++ R E+ L + +I Q+ +
Sbjct: 114 KVLPWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENLHVTPRMIITPQANKP 172
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQL 547
++ + QD+LTA + + V L +M L MF P R P I K W+GKQ+
Sbjct: 173 VMGIVQDTLTAVRKMTKRDVFLEKHEMMTLLMFLPIWDGRMPQPAILK--PKPYWTGKQI 230
Query: 548 FSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGN 587
FS+++P PD E P + + K++ G L G+
Sbjct: 231 FSLIIPGNLNLIKTHSTHPDDEDDGPYRWISPGDTKVLVEHGELIMGILCKKTLGSSSGS 290
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ Y Q V+ WL + G ++ + D + D YG
Sbjct: 291 LLHVAWMELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGD-----------TISDPSTYG 339
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ +A + AK+ + + E L Q + +
Sbjct: 340 VIQAT----------------IHKAKEDVIEVIHKAHNDELEPTPGNTLRQTFENQVNRI 383
Query: 707 FWDIQNL----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR- 758
D ++ A K ++ N+L AM AGSKG+ + + Q C+G Q+ P FR
Sbjct: 384 LNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRK 443
Query: 759 --FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSF 814
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 444 RTLPHFIK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI 487
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGTVRN+ +Q++Q Y +G + E P
Sbjct: 488 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSV-SQVIQLRYGEDGLAGEFVEFQKMP 546
Query: 873 VGSLSACAISE 883
LS E
Sbjct: 547 TVKLSKRRFEE 557
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|315056651|ref|XP_003177700.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum
CBS 118893]
gi|311339546|gb|EFQ98748.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum
CBS 118893]
Length = 1429
Score = 174 bits (441), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 162/608 (26%), Positives = 263/608 (43%), Gaps = 108/608 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L CI G
Sbjct: 371 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 430
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G R+ + L GD++ R L DGDIVL NR PS+H S+++
Sbjct: 431 ANYLIKEGNSFRLFLKYGNLNMIANQLREGDVVERHLEDGDIVLFNRQPSLHKLSILSHF 490
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 491 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 549
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---QMFCPHRFLSPDIFKISKDSVWSGKQ 546
+++ QD +TAA+LL Q+ + RF P I +W+GKQ
Sbjct: 550 PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 609
Query: 547 LFSMLLPPDFEYTFPSK---DVYISGGKLISA------EGSSWL--RDYE---------- 585
+FS+L+ P+ + P K D KL+ E WL R+ E
Sbjct: 610 VFSVLMRPNKDS--PVKVNLDAACRQLKLVKGQPRDLCENDGWLCIRNSEMLCGVADKST 667
Query: 586 ------GNLFQYLIKRYRDKVLDFLYAA--------QEVLCEWLSVRGMTVSLSDLYLAS 631
N+F ++I+R DF YAA ++ WL+ +G ++ ++D+Y
Sbjct: 668 IGAGKKDNIF-FVIQR------DFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPG- 719
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQ----LMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
E L++ FQQ + S M DS T
Sbjct: 720 ----------ESLVRLKDTLINTAFQQCDDLITAASKEKPQMGKSDSRQT---------A 760
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E + + L++ A ++ ++ SK N+ L M GSKG+ + + Q +G
Sbjct: 761 ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMVAVVG 812
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q + + + + R ++ + V NSF +GL P E H++
Sbjct: 813 QQSIENARVSKGFQDRTLPHFAR--------HSQHALAKGFVRNSFFSGLTPTEFLFHAM 864
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------N 857
+ R+ G ++RRLM + DL T YD TVR++ + I+QF Y N
Sbjct: 865 SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDS-SSFIIQFQYGDDQLDPVN 923
Query: 858 IEGTSTPT 865
+E ++ P
Sbjct: 924 MEASAKPV 931
Score = 54.3 bits (129), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ N ++ C +CG D + C GHFG+++ H + ++L IC C I
Sbjct: 65 DPRLGISNKSDTCETCGG-DLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKI 123
Query: 106 -----------RKERQKGAGSSRKEQ--PRVCKYCVRNPAQWY 135
++ R+ G + R+ Q R+ C + P +Y
Sbjct: 124 LLPEDERRSYLKELRRPGLDNLRRMQINKRINVRCRKTPICYY 166
Score = 48.1 bits (113), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I+ R+ +++ GI+A + + S +S G I P H+ ++A+ ++ G
Sbjct: 1266 DGIEGHRTRTNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKG 1323
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D +QG + + GK
Sbjct: 1324 EVLGITRFGLAKIR-----DSVLQLASFEKTADHLFDAGGAGRHDTVQGVSECIIMGKTI 1378
Query: 1250 SVGTG 1254
S+GTG
Sbjct: 1379 SLGTG 1383
>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
Length = 1761
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 259/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ + + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
D + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPDGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M +GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMADSGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.8 bits (94), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGIERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|119643730|gb|ABL85585.1| RNA polymerase II largest subunit [Xanthoparmelia conspersa]
Length = 1000
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 147/575 (25%), Positives = 255/575 (44%), Gaps = 71/575 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 268 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 327
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DG+ + NR PS H S+
Sbjct: 328 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGEYIXFNRQPSXHKESM 383
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+VLP S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L + + +++
Sbjct: 384 MGHRVRVLPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSQESRAELQQLCLVPRNIVSP 442
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + L+ Q+ + ++ P P I K + W
Sbjct: 443 QKNAPLMGIVQDTLCGIYKICRRDNFLTKEQVMNIMLWVPEWDGTIPQPAILKPT--PRW 500
Query: 543 SGKQLFSMLLPPDF-----------EYTFPSKD-VYISGGKLISA--EGSSWLRDYEGNL 588
+GKQ+ SM+LP + +Y PS + + I G+L+ + + G +
Sbjct: 501 TGKQIISMVLPKNLNLEETESGSVKDYYAPSDEGLMIQEGELMFGLLKKKNVGTSAGGVI 560
Query: 589 FQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMDEIFYGL 647
+ D + F AQ V+ WL G ++ + D + + + + E +
Sbjct: 561 HTIFNENGHDAAMAFFNGAQVVVNYWLLHNGFSIGIGDTIPDGDTVKKIQSAVAEQKALV 620
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
+ +T +L MN M+ + S L+ + ++ +Q S+ +
Sbjct: 621 AKTTETAYNDELEPSPGMNIRMTFE------SKVMADLNKARDKAGGAAQDSLPDY---- 670
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
N + M +AGSKG+ + + Q +G Q A R P +
Sbjct: 671 --------------NDFVQMSRAGSKGSGINIAQIMALVGQQ---AVEGKRIPFGFNYRT 713
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
D + ++ +I ENS+L GL P E F H++ R+ G +
Sbjct: 714 LPHFSKDDYSPTSRGFI-----ENSYLRGLTPPEFFFHAMAGREGLIDTAVKTAETGYIQ 768
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + ++C YDGTVR++ GN I+QF Y +G
Sbjct: 769 RRLVKALEEVCVKYDGTVRDSRGN-IMQFLYGEDG 802
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 211/980 (21%), Positives = 388/980 (39%), Gaps = 203/980 (20%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI----------SFRLLE 375
R V+T DPN+ + ++G+P +A + +E + +N +RL + + + +
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 376 KGEL-----------------YVCRKGGLVRIRRIDALELGDIIYRP------------- 405
G+ Y R ++R +A + + RP
Sbjct: 423 NGDRIDLRFHPKPSDLHLQTGYKARNRPGSQLREQEAGKRVGTLSRPVHKDPDLLAVLKT 482
Query: 406 --------LTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDC 457
+ DGDIV+ NR P++H S++ V++LP S+ +N +P++ DFDGD
Sbjct: 483 AALWVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDE 541
Query: 458 LHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQM 517
++ ++PQ++ R E+ EL + + ++ QS R ++ + QD+LTA + V L ++
Sbjct: 542 MNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEV 601
Query: 518 QQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFEYTFPS 562
L MF + P I K +W+GKQ+FS+++P PD E + P
Sbjct: 602 MNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPY 659
Query: 563 KDVYISGGKLISAEGS--------SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCE 613
K + K++ G L G+L + Y+ Q V+
Sbjct: 660 KHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINN 719
Query: 614 WLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKD 673
WL + G T+ + D S + +I +++A+ + +++ +H N L
Sbjct: 720 WLLIEGHTIGIGD------SIADSKTYQDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPG 771
Query: 674 SESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKA 730
+ ++ + + L+ + ++ + +Q S+ + N+ +M +
Sbjct: 772 NTLRQTFENQVNRILNDARDKTGSSAQKSLSEY------------------NNFKSMVVS 813
Query: 731 GSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYI 784
G+KG+ + + Q +G Q+ P F+ PH + Y
Sbjct: 814 GAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIK----------------DDYG 857
Query: 785 PSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYD 840
P + VENS+L GL P E F H++ R+ G + RRL+ M + YD
Sbjct: 858 PESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYD 917
Query: 841 GTVRNAYGNQIVQFSYNIEG 860
TVRN+ NQ+VQ Y +G
Sbjct: 918 ATVRNSI-NQVVQLRYGEDG 936
>gi|157741630|gb|ABV69520.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 166/638 (26%), Positives = 285/638 (44%), Gaps = 114/638 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+T DPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITSDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGD++L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------SAE 576
W+GKQ+ SM+LPP E + P+ D ++++ G+L+
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKEPQPPGERSAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 577 GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR 636
GS+ + N F + + + F AQ V+ WL G ++ + D + +
Sbjct: 550 GSNGIIHTIFNEFGH------ETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEK 603
Query: 637 -KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSA 693
K+ +D R+ + Q+ V +E +L G ++ ++E + SA
Sbjct: 604 IKLEVD------RKKAEVERITQMAV------------AEDLEALPGMNVRETFESKVSA 645
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH-- 750
AL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 646 ALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVE 696
Query: 751 -SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHS 806
P F++ PH D + +K + VENS+L GL P E F H+
Sbjct: 697 GKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHA 742
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
+ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 743 MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD-- 799
Query: 865 TGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+AA+ + + L+E+ L+
Sbjct: 800 GAHIEKQRV---DVIAMSDAAFEKQFR-VDLMESKKLV 833
>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
Length = 891
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 151/576 (26%), Positives = 255/576 (44%), Gaps = 72/576 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ + E+G+P VA+ L + + WN E + ++ + G
Sbjct: 330 GKRVDFSSRTVISPDPNLSINEVGVPIDVAKILTVPMTVTEWNIEMARQLVLNGPEVWPG 389
Query: 378 ELYVCRKGGLVRIRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
YV G RR+D L G I+ R L +GDIVL NR PS+H S+
Sbjct: 390 ANYVVYPDG----RRVDLRYFRDRRELANKLAPGFIVERHLMNGDIVLFNRQPSLHRMSM 445
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+VLP ++ C P++ DFDGD ++ ++PQ AR E L+ + +I
Sbjct: 446 MGHIVRVLP-GRTFRLHLAVCPPYNADFDGDEMNLHVPQNEEARAEAKTLMLVQNHIITP 504
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGK 545
+ G ++ QD +T +LL ++ + L + + + +W+GK
Sbjct: 505 RYGGPIIGARQDYITGGYLLTRKDTFVNKELLMYLLAAANYDGEIDEPAIMHPKELWTGK 564
Query: 546 QLFSMLLPPDFEYTFPS------KDVY---------ISGGKLISA--EGSSWLRDYEGNL 588
Q+ SMLLP D + P+ KD Y + G + + + S + +L
Sbjct: 565 QVVSMLLPKDLNWVQPTAIKESCKDPYNCYTDEYIVVVNGYMATGVLDKKSIGAEQVDSL 624
Query: 589 FQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ ++KRY D ++ + L +L +RG T+ + L + S + +++++
Sbjct: 625 WHVVVKRYGNDYARKWVDSVLRALLRFLDLRGFTMGIDSLEMPRESYNE---LEKLYE-- 679
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
++ + D F ++E +++ + E + LS+ A +
Sbjct: 680 -------ESERKVFDYIQRFREGKLEAEPGLTVEE---TLENDITIELSRVREAAAR--- 726
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+A KY +KD M K G++G+++ + Q +G Q RF +
Sbjct: 727 -----VAEKYINKDGEAYIMAKTGARGSIVNITQMVAMIGQQTIRGE---RFKRGFTGRT 778
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTL 824
GD AK + V N+F GL P+E F H+ RD D A G +
Sbjct: 779 TAHFEPGDLGPMAKGF-----VRNNFKVGLTPVEFFFHAAGGRD-GLVDTAVRTAQSGYM 832
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ ++D+ AYDGTVRNA G+ I+Q Y +G
Sbjct: 833 QRRLINALQDIYVAYDGTVRNASGS-IIQTKYAEDG 867
Score = 48.9 bits (115), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECS 59
E+P + I I + +SVMEI V + + RLG+ P C
Sbjct: 14 EIPLKTIKAIKFSILSPDVIRSMSVMEITTSETYDEAGRPMVGGLMDRRLGVVEPGARCE 73
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+CG K C GHFG I+ ++H + I LL + C +C I
Sbjct: 74 TCGNPPDK-CPGHFGRIELARPVIHVEYAKYIHDLLRTTCRECGRI 118
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 181 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 240
Query: 373 LLE-KGELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 241 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 296
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 297 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 355
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 356 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 415
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 416 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 475
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 476 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 529
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 530 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 580
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 581 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 631
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 632 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 678
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 679 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 732
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 733 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 763
>gi|260946503|ref|XP_002617549.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
gi|238849403|gb|EEQ38867.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
Length = 1491
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 152/604 (25%), Positives = 273/604 (45%), Gaps = 90/604 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+++ E+ +P +VA+ L E+ +N ++L + ++ + G
Sbjct: 402 GKRVDFSGRTVISPDPNLRIDEVAVPDRVAKILTYPEKCTRYNRQKLQKLILNGPTVHPG 461
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ + R++ L +GDI+ R + DGD+VL NR PS+H S+++
Sbjct: 462 ANYVLKQNEVAKRNLKFGDRVKLAKTLRIGDIVERHIEDGDVVLFNRQPSLHRLSILSHY 521
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 522 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 580
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKISKDSVWSG 544
+++ QD +T ++L+ + QL + P +FK +W+G
Sbjct: 581 PIIAATQDFITGSYLISHKDSFFDRASLVQLLCMMSDADMQFDIPPPTVFKPV--MLWTG 638
Query: 545 KQLFSMLLPPDFE-------------YTFPSKD-----------VYISGGKLISA--EGS 578
KQ+FSML+ P+ + + P K V I G +++S + S
Sbjct: 639 KQVFSMLIRPNKKSNVVINVDAKNKTFIPPPKHLPNEMSPNDGFVVIRGSQILSGVMDKS 698
Query: 579 SWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ + ++F +++ Y D+ + ++ +L RG ++ ++D+ + ++K
Sbjct: 699 TLGDGKKHSVFYTILRDYGPDEAAKAMNRMAKLCARYLGNRGFSIGINDVTPGADLKAKK 758
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
M E Y C+ ++D + K T+ E + E + LS+
Sbjct: 759 ERMVEAAYA------KCD---ELID------LYTKGKLETQPGCNEEQTLEAKIGGLLSK 803
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAP 754
+ + ++ +L N+ L M GSKG+ L + Q +G Q + P
Sbjct: 804 VREEVGEVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVP 855
Query: 755 LSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F+ PH T+ +K+ V NSF +GL+P E H+++ R+
Sbjct: 856 DGFQDRSLPH--------------FTKMSKTPQSKGFVRNSFFSGLSPPEFLFHAISGRE 901
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G ++RRLM + DL ++YD TVRN+ N IVQF+Y +G E
Sbjct: 902 GLVDTAVKTAETGYMSRRLMKSLEDLSSSYDNTVRNS-SNGIVQFTYGGDGLDPLDMEGD 960
Query: 870 DQPV 873
QPV
Sbjct: 961 AQPV 964
Score = 43.5 bits (101), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 6 CEEGLEVPS----GILTGISLGIST----DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNE 57
C +GLE + I+ + I+T D EK + SV E GA+ + ++G E
Sbjct: 45 CIKGLEFSALSARDIVAQSEVEITTRDLYDLEKGR-SVREGGAL----DTKMGTSTNAVE 99
Query: 58 CSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
CS+C + C GHFG ++ + H + I +L IC C + + Q
Sbjct: 100 CSTCHG-NLATCHGHFGHVRLALPVFHVGYFKAIISVLQCICKNCAAVLLDEQ 151
>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
CQMa 102]
Length = 1746
Score = 174 bits (441), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 259/594 (43%), Gaps = 112/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 468 MGHQVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QDSL + L + + + ++ P+ + P + W+G
Sbjct: 527 QKNGPLMGIVQDSLAGVYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTG 586
Query: 545 KQLFSMLLP-------PDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR 597
KQL SM++P P+ + P KD G LI + G L L+K+
Sbjct: 587 KQLISMVIPQEISLHAPEGDSDIPPKDT----GLLIQS----------GELLYGLLKKKN 632
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 633 VGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGHSIGIGD------TIPDKQT 686
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
+++I Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 687 IEKI--------------QVHIDTQKAEVAKLTAQATANELEALPGMNVRATFENKVSMA 732
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 733 LNSARDQAGTTTQKSLKD--------SNNAVTMSESGSKGSSINISQMTALVGQQIVEGK 784
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 785 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMA 830
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ IVQF Y +G
Sbjct: 831 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDG 883
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|397135860|gb|AFO11425.1| RNA polymerase I, partial [Kregervanrija fluxuum]
Length = 870
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 150/576 (26%), Positives = 262/576 (45%), Gaps = 63/576 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L ++G+P +A+ L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDQVGVPISIAKTLSYPEIVTPYNIQKLTEMVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDSG----DRIDLRFNKRAGDIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++
Sbjct: 269 MCHKVKVMPYSTF-RMNLSVTSPYNADFDGDEMNLHVPQSYETRAELSQLCAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + L + Q+ + + P+ + P + +WSG
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTLRDNFLEYDQVMNICFWIPNWDGVVPQPAILKPKPLWSG 387
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ S+ +P D P S + ++G + + + G L ++
Sbjct: 388 KQVLSLCIPKGIFLQRLDGSLLSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMRE 447
Query: 596 YRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+V ++ Q+V+ WL G ++ + D I E + E D
Sbjct: 448 KGPEVCAKMFGNIQKVVNFWLLHNGFSIGIGD----------AIADPETMKTITETIDVA 497
Query: 655 NFQ-QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNL 713
+ Q+++ + L+ + + R S+E++ S L++A A K +++
Sbjct: 498 KEKVQVVIRDAQHNLLEPEPGMTVRE------SFEQKVSKILNEARDAAGKSAETSLKD- 550
Query: 714 AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRA 773
N++ M AGSKG+ + + Q S C+G Q R S +
Sbjct: 551 -------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEGK---RIHFGFSDRSLPHFTK 600
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFF 831
D + +K + VENS+L GL P E F H++ R+ G + RRL+
Sbjct: 601 DDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKA 655
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
+ D+ YDGT RN+ G+ ++QF Y +G + E
Sbjct: 656 LEDIMVHYDGTTRNSLGD-VIQFIYGEDGLDATSVE 690
>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
Length = 1754
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 260/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 40.8 bits (94), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.8 bits (94), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 174 bits (440), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 260/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.8 bits (94), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|397135854|gb|AFO11422.1| RNA polymerase I, partial [Candida abiesophila]
Length = 870
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 155/583 (26%), Positives = 263/583 (45%), Gaps = 77/583 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V++GDPN++L E+G+P +A+ L E + +N ++L+ + E
Sbjct: 153 LMGKRVDFSARTVISGDPNLELDEVGVPRSIAKTLSYPEIVTPYNIQKLTEMVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYVIRDNG----DRIDLRFNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ D DGD ++ ++PQ+ R EL+++ A+ Q+++
Sbjct: 269 MCHRVKVMPYSTX-RMNLSVTSPYNADXDGDEMNLHVPQSXETRAELSQICAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR---FLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + Q+ + + P P IFK +W
Sbjct: 328 QSNKPVMGIVQDTLCGVRKMTXRDNFIEYDQVMNMCYWIPDWDGIVPQPCIFK--PKPLW 385
Query: 543 SGKQLF---------------SMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGN 587
SGKQ+ SML P D S + ++G + + + G
Sbjct: 386 SGKQVLSLCISKGIFLQRLDGSMLSPKD------SGMLILNGEIMFGVVNKATVGPSAGG 439
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ V ++ Q+V+ WL G ++ + D + M I
Sbjct: 440 LIHTTMREKGSTVCAKMFGNIQKVVNYWLLHNGFSIGIGDAIADPET------MKTITET 493
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+REA++ Q ++ D+ N L + E +++ S+E++ S L++A A K
Sbjct: 494 IREAKEKV--QNVIKDAQANLL----EPEPGMTIRE---SFEQKVSKILNEARDSAGKSA 544
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
+++ N++ M AGSKG+ + + Q S C+G Q R +
Sbjct: 545 ETSLKD--------SNNVKQMVTAGSKGSYINISQMSACVGQQ---IVEGRRIHFGFADR 593
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + +K + VENS+L GL P E F H++ R+ G +
Sbjct: 594 TLPHFTKDDYSAESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
RRL+ + D+ YDGT RN+ G+ ++QF Y +G T E
Sbjct: 649 QRRLLKALEDIMVHYDGTTRNSLGD-VIQFLYGEDGLDATTVE 690
>gi|147921534|ref|YP_684650.1| DNA-directed RNA polymerase subunit A' [Methanocella arvoryzae
MRE50]
gi|110620046|emb|CAJ35324.1| DNA-directed RNA polymerase, subunit A1 [Methanocella arvoryzae
MRE50]
Length = 877
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 160/601 (26%), Positives = 272/601 (45%), Gaps = 100/601 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DPN+ + E+G+P ++A+ + + + +N E + + R E
Sbjct: 310 GKRVNFSARTVISPDPNLSINEVGVPLRIAKEMTVPVTVTPFNIEVVREYVR-RGSENHP 368
Query: 377 GELYVCRKGGLVRIRRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RR+ D +E+G + R L DGDIVL NR PS+H S+
Sbjct: 369 GANYVKRADG----RRLKITDKNCEELADQIEVGWKVDRQLKDGDIVLFNRQPSLHRMSI 424
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
++ V+V+P +NP C+P++ DFDGD ++ ++PQ + A E L+ + + +++
Sbjct: 425 MSHFVRVMP-HKTFRLNPAVCAPYNADFDGDEMNLHVPQTMEALAEARILMLVQENILSP 483
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQ-MQQLQMFCPHRFLSPDIFKISKD-SVWS 543
+ G ++ D ++ +LL + L + ++ L H P+ +K+ +S
Sbjct: 484 RFGGPIIGGLHDHVSGIYLLTKGYRLYTETDALEILSKVNVHEL--PEPYKVENGIRYYS 541
Query: 544 GKQLFSMLLPPDFEYTFPSKD-----------------VYISGGKLISAE-GSSWLRDYE 585
GKQ+FS +LP + T+ +K V IS G+L + + +
Sbjct: 542 GKQIFSQILPKGLDMTYKAKICENCEECKGELCEKDAFVRISDGELKTGTIDEKAIGAFS 601
Query: 586 GNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G + +IK Y + +FL + ++ RG + +SD +
Sbjct: 602 GKILDRIIKTYDEHTASNFLDNVTRLAIRAITARGFSYGISDTDIP-------------- 647
Query: 645 YGLREAQDTCNFQQLMVDS--HMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASV 700
A+ T +++++S + L+ A D L G L + E + L++A
Sbjct: 648 -----AESTAQITEILLNSGKQVRKLIEAHDHGELEPLPGRTLEETLEMRIMQELAKARD 702
Query: 701 DAFKHVFWDIQNLAYKY-GSK-DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
A +A K+ GS+ DNS + M ++G++GN L L Q + C+G Q R
Sbjct: 703 GA--------GGIAGKFLGSQEDNSAVIMARSGARGNFLNLTQMAGCVGQQSVRGERIMR 754
Query: 759 ------FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
PH +AGD A+ + VE+S+ GLNP E F H++ R+
Sbjct: 755 GYTDRTLPH---------FKAGDRGADARGF-----VESSYKKGLNPTEFFFHAMGGRE- 799
Query: 813 SFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
D A G L RRL+ ++DL +DGTVR G +VQF Y +G + G
Sbjct: 800 GLVDTAVRTSQSGYLQRRLVNALQDLEVKHDGTVRETRG-VVVQFLYGEDGVDPMKSDYG 858
Query: 870 D 870
+
Sbjct: 859 E 859
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKDRKA 68
I G+ + E K+SV +I + +PRLG+ +P C +CG + +
Sbjct: 10 IRFGLLSPAEIRKMSVTKIITADTYDDDGYPIDMGLMDPRLGVIDPGLRCRTCGGRPGE- 68
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GHFG I+ ++H F + K+L + C KC
Sbjct: 69 CPGHFGHIELAAPVIHVGFARLLRKVLRTTCRKC 102
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 172/633 (27%), Positives = 284/633 (44%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKK--KVLDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.4 bits (93), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG ++ +PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLN---DPRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|157741596|gb|ABV69503.1| RNA polymerase II largest subunit, partial [Wahlenbergiella mucosa]
Length = 999
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 157/592 (26%), Positives = 266/592 (44%), Gaps = 100/592 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RLS ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRTIARNLTYPETVTKFNIGRLSQLVANG 321
Query: 373 L-LEKGELYVCRK-GGLVRIRRIDA-----LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
+ G YV RK G + +R + + L+ G + R L DGD++L NR P
Sbjct: 322 PNVHPGAKYVIRKQGDRIDLRHVKSSRGVELQTGMKVERHLLDGDVILFNRQPX------ 375
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL++L + +++
Sbjct: 376 -XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLCMVPLNIVSP 433
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + V LS ++ + ++ P P IFK + W
Sbjct: 434 QRNGPLMGIVQDTLCGIYKICRRDVFLSRDEVMNIMLWVPDWDGVIPEPAIFK--PRTRW 491
Query: 543 SGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------SAEGS 578
+GKQ+ SM+LP E P+ D ++++ G+L+ GS
Sbjct: 492 TGKQIISMVLPTALNLVRIDGKASQSPCERFAPAGDGGLFVADGQLLFGLFNKKSVGTGS 551
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-K 637
+ + N F + + + F AQ V+ WL G ++ + D + + K
Sbjct: 552 NGIIHTIFNEFGH------ETAMSFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKVK 605
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+D+ + E + + L MN ++E + SAAL+
Sbjct: 606 REVDKKKTEVEEITQSAVAEDLEALPGMNV----------------RETFESRVSAALNG 649
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 650 ARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRI 700
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + +K + VENS+L GL P E F H++ R
Sbjct: 701 PFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGR 746
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 747 EGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|443906356|dbj|BAM76816.1| RNA polymerase II largest subunit, partial [Metacordyceps
brittlebankisoides]
Length = 845
Score = 174 bits (440), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 155/590 (26%), Positives = 257/590 (43%), Gaps = 104/590 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 178 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 237
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 238 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 293
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 294 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSP 352
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QDSL + L + + + ++ P+ + P + W+G
Sbjct: 353 QKNGPLMGIVQDSLAGVYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTG 412
Query: 545 KQLFSMLLPPDFEYTFPSKDVYI---SGGKLISAEGSSWLRDYEGNLFQYLIKRYR---- 597
KQL SM++P + P D I G LI + G L L+K+
Sbjct: 413 KQLISMVIPQEISLHAPEGDSDIPLKDTGLLIQS----------GELLYGLLKKKNVGAA 462
Query: 598 --------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ + FL Q+V+ WL G ++ + D + K +++I
Sbjct: 463 AGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGHSIGIGD------TVPDKQTIEKI 516
Query: 644 FYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
Q+ +D+ + L + + +L G ++ ++E + S AL+ A
Sbjct: 517 --------------QVHIDTQKAEVAKLTAQATANELEALPGMNVRATFENKVSMALNSA 562
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPL 755
A +++ N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 563 RDQAGTTTQKSLKD--------SNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIPF 614
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 615 GFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREG 660
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ IVQF Y +G
Sbjct: 661 LIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IVQFLYGEDG 709
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 158/610 (25%), Positives = 265/610 (43%), Gaps = 99/610 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 340 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYG 399
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELG------------------- 399
+ G Y+ R G +R+D LELG
Sbjct: 400 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDQHLELGYRYVLLSYSIHSTHKRLFL 455
Query: 400 ---------DIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
+ R L DGD VL NR PS+H S++ ++++P S+ +N SP++
Sbjct: 456 EVVIFMLSWSQVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYN 514
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLME-DS 509
DFDGD ++ ++PQ+ R E+ EL+ + K +++ Q+ R ++ + QD+L + + D+
Sbjct: 515 ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDT 574
Query: 510 VLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLP------------PDFE 557
+ + M L + P + +W+GKQ+F++++P D E
Sbjct: 575 FIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHADTE 634
Query: 558 YTFPS---KDVYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLC 612
F + V I G+L++ L G+L + + D FL Q ++
Sbjct: 635 TGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGHTQWLVN 694
Query: 613 EWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK 672
WL G T+ + D +A S KI + N + + D F
Sbjct: 695 YWLLQNGFTIGIGDT-IADSSTMEKI-----------NETISNAKTAVKDLIRQFQGKEL 742
Query: 673 DSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGS 732
D E R+++ ++E + + L++A DA + A K ++ N+L AM AGS
Sbjct: 743 DPEPGRTMRD---TFENRVNQVLNKARDDA--------GSSAQKSLAETNNLKAMVTAGS 791
Query: 733 KGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENS 792
KG+ + + Q + C+G Q+ R P D ++ + VENS
Sbjct: 792 KGSFINISQMTACVGQQNVEGK---RIPFGFDGRTLPHFTKDDYGPESRGF-----VENS 843
Query: 793 FLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQ 850
+L GL P E F H++ R+ G + RRL+ M D+ YDGTVRN+ G+
Sbjct: 844 YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD- 902
Query: 851 IVQFSYNIEG 860
++QF Y +G
Sbjct: 903 VIQFLYGEDG 912
>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
Length = 1752
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 260/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 40.8 bits (94), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.8 bits (94), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 260/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 40.8 bits (94), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|397135832|gb|AFO11411.1| RNA polymerase I, partial [Zygosaccharomyces rouxii]
Length = 871
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 159/582 (27%), Positives = 261/582 (44%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL++ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTMLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHVIDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ +Q
Sbjct: 265 KMSMMAHKVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L L + Q+ + + P +P I K
Sbjct: 324 IVSPQSNKPCMGVVQDTLCGIRKLTLRDNFIELGQVLNMLYWVPDWDGVIPTPAILK--P 381
Query: 539 DSVWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQL S+ +P KD + I G + + G
Sbjct: 382 KPLWTGKQLLSVAIPKGIHLQRFDEGTTLLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGG 441
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V L++ Q+V+ W G + + D + M +I
Sbjct: 442 LIHVVTREKGPQVCATLFSNIQKVVNYWFLHCGFSTGIGDTIADGQT------MRQITEA 495
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ + + ++ N L++AK + R S+E L++A A +
Sbjct: 496 IAEAK--VKVEDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGR-- 544
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
LA + N + M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 545 ------LAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 598
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 599 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 644
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G
Sbjct: 645 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGEDG 685
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 173 bits (439), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 169/629 (26%), Positives = 279/629 (44%), Gaps = 74/629 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S+++ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMSHRVKVVPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L +L L + + + P +P I K
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRILTLKDTFLEFDHVLNMLYWVPDWDGIIPTPAILK--P 568
Query: 539 DSVWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQ+ S +P KD + I G + + G
Sbjct: 569 KPLWTGKQILSAAIPKGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V L+ Q+V+ WL G + + D + + EI
Sbjct: 629 LIHVVTREKGPQVCSRLFGNIQKVVNFWLLHNGFSTGIGDTIANGET------IKEITET 682
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ +++ ++ N L++AK + R S+E L++A A +
Sbjct: 683 IAEAKK--KVEEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLA 733
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
++ + Y + M AGSKG+ + + Q S C+G Q R +
Sbjct: 734 EVNLNDTNY--------VKQMVSAGSKGSFINIAQMSACVGQQSVEGK---RIGYGFVDR 782
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + +K + VENS+L GL P E F H++ R+ G +
Sbjct: 783 TLPHFSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYI 837
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEA 884
RRL+ + D+ YDGT RN+ GN I+QF Y +G I Q SL S+A
Sbjct: 838 QRRLVKALEDIMVHYDGTTRNSLGN-IIQFIYGEDGID--ASHIEKQ---SLDTIGGSDA 891
Query: 885 AYSALDQPISLLETSPLLNLKNVLECGSK 913
A+ + I LL+ L+ ++LE GS+
Sbjct: 892 AFEKRYR-IDLLKVENSLD-PSLLESGSE 918
Score = 43.5 bits (101), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG ++ +PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLN---DPRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F+S I K+ S+C C
Sbjct: 95 FISKIKKVCESVCMHC 110
>gi|157741484|gb|ABV69447.1| RNA polymerase II largest subunit, partial [Catapyrenium daedaleum]
Length = 999
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 153/591 (25%), Positives = 255/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQFNKERLKQFVTNG 321
Query: 373 L-LEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ G RID L G + R + DGD++L NR P
Sbjct: 322 PDTHPGARYIIREQG----ERIDLRFHKDPKSITLLTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWIPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVADGQLLFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 548 GTGANGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEK---- 603
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 -------------IKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
Length = 1746
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 260/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 40.8 bits (94), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|397135834|gb|AFO11412.1| RNA polymerase I, partial [Saccharomyces cerevisiae]
Length = 871
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 172/633 (27%), Positives = 284/633 (44%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 384 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 444 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 498 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 549 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 600 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 647 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 700
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 701 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 731
>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
Length = 1756
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 260/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 40.8 bits (94), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.4 bits (93), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|290999395|ref|XP_002682265.1| predicted protein [Naegleria gruberi]
gi|284095892|gb|EFC49521.1| predicted protein [Naegleria gruberi]
Length = 1426
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 216/916 (23%), Positives = 389/916 (42%), Gaps = 169/916 (18%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC--- 102
+PRLG + C +CG C GH+G++K + H F+S++ ++L IC C
Sbjct: 69 DPRLGTGTKKDICETCGL-GVADCIGHYGYVKLELPVFHIGFISNVVEVLQRICKDCSRV 127
Query: 103 -------KTIRKERQKGAGSSRKEQ-----PRVCKYCVRNPAQWYPRMRF-KLSSKDL-- 147
++ R + ++ + +K+ +CK C + P + KL++ +
Sbjct: 128 LLSDSEIQSFRNKFKRPMDNQQKKALYKKVGELCKKCSQCPHCGSLNGKVTKLNAIKIVH 187
Query: 148 -SGKTAIIVEIDEKLSKKNKKLPDDYWGFI-------PF--DAQQEENSVKPNRKVLSCK 197
K A + + + +++++ ++ + PF +AQ + N ++ R +
Sbjct: 188 EKYKVASTRKGKDDIDQQSREFQSEFGLAVQLNPEIEPFLGEAQDDINPIRCLRLFKNIS 247
Query: 198 QVSYLLKDVDPSI--REEFILSKD-APFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWT 254
+ +++P + E FIL+ P L P + E D+ T
Sbjct: 248 DTDVEVLNMNPKVVRPENFILTHILVPPLVIRPTVNTDGGTNE-------------DDLT 294
Query: 255 RHLKKMVDYR---GRDIELSHLVQ------DCLKI-SKLHLDKSSRKDSAEVRQKKNIDI 304
+KK+++ +E +VQ D L++ + L+++ +R + V +KK +
Sbjct: 295 AQMKKIIETNIILRESVEQGAIVQNFMEKWDTLQLETALYINSDTRNIPSFVTKKK---V 351
Query: 305 SNSSGLRW------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLN 358
S + R + + GKR + R V++ DPN+++ ++ IP VA+ L E +N
Sbjct: 352 SKTLCQRLKGKHGRFRGNLSGKRANFTGRTVISPDPNLEINQVAIPELVAKVLTYPEVVN 411
Query: 359 SWNWERL-SVCISFRLLEKGELYVCRKGGLVR--------IRRIDALELGDIIYRPLTDG 409
N + L S+ ++ + G +V + G+ + + L+ GDI+ R + +G
Sbjct: 412 RTNKKLLQSLILNGPEVHPGANFVIKSDGIRKNLAFAKDKMEVAKNLKFGDIVERHVMNG 471
Query: 410 DIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGAR 469
D L NR PS+H S++ VKVLP + N C+P++ DFDGD ++ +IPQ A+
Sbjct: 472 DYALFNRQPSLHRLSIMCHRVKVLPYRTF-RFNVCDCAPYNADFDGDEMNVHIPQTEEAK 530
Query: 470 VELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM---------EDSVLLSHLQMQQL 520
E L+ + K LI ++G ++S QD LTAA + E +L S++ ++
Sbjct: 531 AEAGMLMDILKNLITPKNGDPVISCNQDFLTAAWKMTRKNTFFDRAEFCMLCSYMGIEDK 590
Query: 521 QMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDF------------------EYTFPS 562
++ P P I K +W+GKQLFS+L+ P+ E P+
Sbjct: 591 KIDLP----PPTILK--PIELWTGKQLFSLLVKPNNNTNVFVNFETKAKNYLKDETMCPN 644
Query: 563 ------KDVYISGGKL---ISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAA------ 607
++ Y+ G L I +GS + +LF LI + + YAA
Sbjct: 645 DGYVCFRNSYLICGNLDKKILGDGS------KSSLFYVLI-----RTVGPAYAAACMARV 693
Query: 608 QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCN-FQQLMVDSHMN 666
V WL G ++ + D+ ++ +K ++ L E C+ + +L D +
Sbjct: 694 ARVASRWLMNYGFSIGIDDVMPSAQLTEKKKMI------LSEGYAVCDEYIKLYKDGKLE 747
Query: 667 FLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLA 726
++ + LS + R+ ++ + W N+ L
Sbjct: 748 PQPGCNMEQTLEAKLNRELSEIRGRAGSM------CLDELHW------------LNAPLT 789
Query: 727 MFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPS 786
M GSKG+++ + Q C+G Q ++ R + AK +
Sbjct: 790 MSVCGSKGSVINISQMIACVG-QQTVG--GTRIANGFMNRTLPHFPMFARDPAAKGF--- 843
Query: 787 AVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVR 844
V NSF TGL P E F H++ R+ G + RRLM + DL AYDG+VR
Sbjct: 844 --VSNSFFTGLTPTEFFFHTMGGREGIVDTAVKTAETGYMQRRLMKALEDLFVAYDGSVR 901
Query: 845 NAYGNQIVQFSYNIEG 860
+A N ++QF Y +G
Sbjct: 902 SA-DNTVIQFKYGDDG 916
>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
Length = 1754
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 153/584 (26%), Positives = 261/584 (44%), Gaps = 80/584 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L + R+ +N LS ++
Sbjct: 347 IRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSIAMNLTVPTRVTPFNIHELSALVANG 406
Query: 373 LLE-KGELYVCRKGGL-VRIRRIDA-----LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G ++ R GL + +R + L G I+ R L DGDIVL NR PS+H S+
Sbjct: 407 PTEHPGAKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLNDGDIVLFNRQPSLHKMSI 466
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ KVL S+ +N C SP++ DFDGD ++ ++PQ++ AR E ++ K +++
Sbjct: 467 MGHQAKVLDWSTF-RLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHSPKVIVSG 525
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QDSL + + + + + + M+ R P I+K + +W
Sbjct: 526 QSNRPVMGIIQDSLLGVQKMTKRDIFIKKDLLMNILMWVTDWDGRIPPPAIYK--PEELW 583
Query: 543 SGKQLFSMLLP--------------PDFEYTFPSKDVYISGGKLISA--EGSSWLRDYEG 586
+GKQ+ +++LP PD + V I G+LI + + G
Sbjct: 584 TGKQIMTLILPKINLRGKANNGGPKPD-TFNVYDNQVRIMEGELIEGTIDKKTIGSGMGG 642
Query: 587 NLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + + F+ Q+V+ W+ ++ D +A S M++I
Sbjct: 643 IIHTAWLDVGHEDTTRFMNQTQQVVNHWILQYSFSIGACDA-IADVST-----MEQIANT 696
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ +A+ +N L + R Q L + R+ +++F+ +
Sbjct: 697 INKAK-------------LNVL------DLVRKGQRGELETQPGRTM------IESFEQL 731
Query: 707 FWDIQNLAYKYGSKD--------NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
+ N A + K NS+ AM AGSKG+ + + Q C+G Q+ R
Sbjct: 732 VNRVLNTARDHAGKSAQSSLSETNSVKAMVTAGSKGSFINISQIIACVGQQNVEG---NR 788
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P+ + D ++ + VENS+L GL P E F H++ R+
Sbjct: 789 IPYGFKRRTLPHFQKDDLGPESRGF-----VENSYLFGLTPQEFFFHAMGGREGLIDTAC 843
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGT+R + G QIVQF Y +G
Sbjct: 844 KTAETGYIQRRLVKAMETVMARYDGTLRTS-GGQIVQFLYGEDG 886
>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
niphandrodes]
Length = 1020
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 165/594 (27%), Positives = 270/594 (45%), Gaps = 95/594 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLLE 375
++GKR D R V+TGDPN+++ ++G+P +A L E + S N E L +S +
Sbjct: 264 LMGKRVDFSARTVITGDPNLQIDQVGVPRSIAMNLTYPELVTSMNLEMLRKAVSNGPSVW 323
Query: 376 KGELYVCRKGGLVRIRR-------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G Y+ R G R + LE G + R + DGD VL NR PS+H S++
Sbjct: 324 PGARYITRTDGTRFDLRHCAGNPAVLQLEPGYKVERHVRDGDYVLFNRQPSLHKMSIMGH 383
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
VKVLP S+ N +P++ DFDGD ++ ++ Q+ R E+ +L + KQ+++ Q
Sbjct: 384 RVKVLPWST-FRCNLSVTAPYNADFDGDEMNLHLAQSQETRAEIKQLCLVPKQIVSPQGN 442
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC---PHRFLSPDIFKISKDSVWSGK 545
+ ++ + QDSL + + M L ++ +P I+K K +W+GK
Sbjct: 443 KPVMGIVQDSLLGLAKMTSRDTFIDRPIMMGLCLWVRDWDGILPAPVIYKPEK--LWTGK 500
Query: 546 QLFSMLLPP------------DFEYTFPSKDVYISGGKLISAEGSSWLRDYE-------- 585
QL +M+L D + Y+S + +G ++D E
Sbjct: 501 QLITMILKAGQRGANHVTLHRDGAIRLKQDNEYLS-----ANDGRIIIQDSEHVAGIICK 555
Query: 586 -------GNLFQYLIKR-YRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
G+L L + +K DFL + Q+V+ WL G TV +SD+ S + SR
Sbjct: 556 RTAGTSSGSLIHVLWHQCGPEKTKDFLSSTQKVVNNWLVSIGFTVGVSDIVADSKTVSR- 614
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK-DSESTRSLQGEHLSYEKQRSAALS 696
++EA D + VD + K +++ +SL S+E + + L+
Sbjct: 615 ---------VKEALDDSYVK---VDELIRLARQGKLETQPGKSLLE---SFENRVNQELN 659
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
QA + + +A + + N++++M AGSKG+ + + Q C+G Q+
Sbjct: 660 QAREASGR--------IAAENLTNKNNIISMVNAGSKGSTINISQIMACVGQQNVEGKRI 711
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F+ PH L R G ++ V NS+L+GL P E F H++ R
Sbjct: 712 PFGFQDRSLPHFL------RHDYGPDSR--------GFVYNSYLSGLLPHELFFHAMGGR 757
Query: 811 DSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
+ G + RRL+ M D+ YD TVRN+ G +IVQF Y +G +
Sbjct: 758 EGIIDTACKTSETGYIQRRLVKAMEDVLVTYDRTVRNSNG-EIVQFLYGEDGMA 810
>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus
haptosporus]
Length = 976
Score = 173 bits (439), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 157/592 (26%), Positives = 257/592 (43%), Gaps = 102/592 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + E+G+P +A L + E + +N RL + +
Sbjct: 276 LMGKRVDFSARTVITGDPNLSIDEVGVPRSIARNLTVPEMVAPYNIGRLQELVRNGPNQH 335
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L+ G + R L +GD+V+ NR PS+H S+
Sbjct: 336 PGAKYIIRDTG----ERIDLRYHQRAGDIPLQYGYKVERHLDNGDVVIFNRQPSLHKMSM 391
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ +VE+ E+ + KQ+I+
Sbjct: 392 MGHKVRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETKVEIQEICMVPKQIISP 450
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + + + M +P I K +W
Sbjct: 451 QSNKPVMGIVQDTLCGVRKFTNRDCFMDKALVMNILMLVDDWNGVIXTPAILKPL--PLW 508
Query: 543 SGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLIS---------AEGS 578
+GKQL SM++P PD E + S V + G+LIS A
Sbjct: 509 TGKQLLSMVIPKGINCITYHSAHPDDEKSDISPGDTKVVVEDGELISGIVCKKTVGASNG 568
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
W+ + K+ FL Q V+ WL G ++ + D +A + I
Sbjct: 569 GWVHTIMNEHGPEIAKK-------FLCGTQAVVNYWLLQNGFSIGIGDT-IADEKTAEHI 620
Query: 639 LMDEIFYGLREAQDTCN--FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
E D+ ++++ + + L A + + + +S E R+ S
Sbjct: 621 T---------ETIDSAKQRVSEIILAAQQDKLECAPGMTIRETFESK-VSRELNRARDHS 670
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
S A + ++N++ M +GSKG+ + + Q S C+G Q
Sbjct: 671 GQS--------------AERSLKEENNVKQMVVSGSKGSFVNISQMSACVGQQDVEGKRI 716
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F+F PH D +K + VENS+L L P E F H++ R
Sbjct: 717 PFGFKFRTLPH---------FTKDDYGPESKGF-----VENSYLRRLTPQEFFFHAMGGR 762
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ + D+ YDGTVRN+ GN I+QF Y +G
Sbjct: 763 EGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGN-IIQFCYGEDG 813
>gi|429217660|ref|YP_007175650.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
DSM 15908]
gi|429134189|gb|AFZ71201.1| DNA-directed RNA polymerase subunit A'' [Caldisphaera lagunensis
DSM 15908]
Length = 888
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 154/578 (26%), Positives = 273/578 (47%), Gaps = 71/578 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR + R V++ DP I + E+G+P ++A+ L + + +N E ++ G
Sbjct: 324 GKRVNFSARTVISPDPYISIDEVGVPEEIAKILTLPIVVTPYNIEEARKYVLNGPYNWPG 383
Query: 378 ELYVCRKGGLVRI--------RRI-DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
++V + ++I R++ ++LE+GDI+ R L +GDIVL NR PS+H S++A
Sbjct: 384 AMFVYKSRQNMKIDLRYQRNYRQLAESLEVGDIVERHLLNGDIVLFNRQPSLHRMSIMAH 443
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
V+V+P +N L C+P++ DFDGD ++ ++P+ AR E EL+ ++KQ+++ + G
Sbjct: 444 KVRVMP-GRTFRLNLLDCAPYNADFDGDEMNLHVPRLEEARAEAEELMLVEKQILSPRYG 502
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLF 548
++ QD ++ ++LL + LL+ Q+ L ++ P+ I +W+GKQL
Sbjct: 503 GPIIGGRQDYISGSYLLTVKTNLLTKEQVSLLLAAANYKGKMPEPAIIKPQPLWTGKQLV 562
Query: 549 SMLLPPDFEYTFPSK---------------DVY--ISGGKLISA--EGSSWLRDYEGNLF 589
S+ LP + +K D Y IS G+L+ + ++ + N+
Sbjct: 563 SLFLPKGLSFEGRAKINAGELKCDNERCFFDSYTIISNGRLLMGVFDKNAIGAEQPENVL 622
Query: 590 QYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
Y+ Y DK +FL + L ++G ++SL ++ + +
Sbjct: 623 HYITLEYGPDKAREFLDNVFRMFIRMLEIKGFSISLKEVEIT-----------------K 665
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA--ALSQASVDAFKHV 706
EA+D ++MV+ N + E + + +L R+A +L + + +
Sbjct: 666 EAKDKI---KIMVEQAKNEI-----QEIINNYKEGNLEVIPGRTAEESLELKIIQRLQKL 717
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
D LA Y N+ M + G++G+ + + Q + LG Q R
Sbjct: 718 RDDAGKLAISYMDPFNNAFIMARTGARGSDINITQMAAMLGQQTVRGK---RISRGFRTR 774
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGT 823
+ + GD + A+ +I S +F GL P E F H+ R+ D A G
Sbjct: 775 TLPQFKPGDLSPEARGFIIS-----NFRLGLKPYEVFFHAAGGRE-GLVDTAVKTSQSGY 828
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
+ RRL+ ++DL +YDGTVR++ GN IVQF Y +G
Sbjct: 829 MQRRLINALQDLYVSYDGTVRDSVGN-IVQFKYGEDGV 865
>gi|255717220|ref|XP_002554891.1| KLTH0F16236p [Lachancea thermotolerans]
gi|238936274|emb|CAR24454.1| KLTH0F16236p [Lachancea thermotolerans CBS 6340]
Length = 1460
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 168/624 (26%), Positives = 279/624 (44%), Gaps = 88/624 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R VV+ DPN+ + E+ +P +VA+ L E + +N ++L + I+ G
Sbjct: 369 GKRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVINGPNEHPG 428
Query: 378 ELYVCRKGGLVR--IRRIDALEL------GDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ +K R +R D ++L GD++ R L DGD+VL NR PS+H S+++
Sbjct: 429 ANYLLKKDEEARRNLRYGDRMKLARNLQYGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 488
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 489 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 547
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS---KDSVWSGKQ 546
+++ QD +T ++L+ S + QL L DI S +W+GKQ
Sbjct: 548 PIIAATQDFITGSYLISHKDSFFSRAEFVQLLSMMSDGNLQFDIPPPSIMKPYYMWTGKQ 607
Query: 547 LFSMLLPPDFE------------YTFPSKD-------------VYISGGKLISA-EGSSW 580
+FS+L+ P+ E P KD V I G K++S S
Sbjct: 608 VFSLLIRPNKESPVVINLDAKNKVYIPPKDKSLPNEMSINDGYVVIRGSKILSGVMDKSV 667
Query: 581 LRD-YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKI 638
L D + ++F +++ + + F LC +L RG ++ ++D+ ++K
Sbjct: 668 LGDGKKHSVFYTILRDFGPQEAAFAMNRMAKLCARFLGNRGFSIGINDVTPGFELKNKKE 727
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+M E Y +A ++D + K T+ E + E + LS+
Sbjct: 728 IMVEDAYAKCDA---------LID------LFNKGKLETQPGCNEEQTLEAKIGGLLSKV 772
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPL 755
+ + ++ NL NS L M GSKG+ L + Q +G Q + P
Sbjct: 773 REEVGEVCIKELDNL--------NSCLIMANCGSKGSTLNVSQMVAVVGQQIISGNRVPD 824
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F+ PH L N++ +S V NSF +GL+P E H+++ R+
Sbjct: 825 GFQDRSLPHFLK-----------NSKTPQS---KGFVRNSFFSGLSPPEFLFHAISGREG 870
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G ++RRLM + DL YD T+R + N IVQF+Y +G E
Sbjct: 871 LVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTIRTS-SNGIVQFTYGGDGLDPIDMEGNA 929
Query: 871 QPVG-SLSACAISEAAYSALDQPI 893
QPV S S + ++ +D+P+
Sbjct: 930 QPVNFSRSWEHANNVTFNHVDKPL 953
Score = 45.4 bits (106), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G+ + ECS+C + +C GHFG IK + H + ++L SIC C +
Sbjct: 57 RMGVSSSQAECSTCHG-NLASCHGHFGHIKLSLPVFHVGYFKATIQVLQSICKTCAAL 113
>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
inebrians]
Length = 1761
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 151/589 (25%), Positives = 256/589 (43%), Gaps = 97/589 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ + + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYR----- 597
+GKQL SM++P + P + + ++ G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPESSAGQDNADIPLKDTGLLIQ--SGELLYGLLKKKNIGSAA 642
Query: 598 -------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
D + FL Q+V+ WL G ++ + D + K ++++
Sbjct: 643 GGIVHLSYNELGPDGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQTIEKV- 695
Query: 645 YGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
Q+ +D+ + L + + +L G ++ ++E + S AL+ A
Sbjct: 696 -------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSAR 742
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLS 756
A +++ N+ + M +GSKG+ + + Q + +G Q P
Sbjct: 743 DQAGTTTQRSLKD--------SNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFG 794
Query: 757 FRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
F++ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 795 FKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMAGREGL 840
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 841 IDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.4 bits (93), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGIERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQVVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 159/640 (24%), Positives = 291/640 (45%), Gaps = 97/640 (15%)
Query: 272 HLVQDCL-----KISKL------HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGK 320
H++++C+ K++ L H+ +S ++ R K I ++ ++GK
Sbjct: 220 HMIEECVEYIQFKVATLMDNNLPHMPQSQQRSG---RPIKAISQRLKGKEGRVRGNLMGK 276
Query: 321 RNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGEL 379
R D R V+T DPN+ + ++G+P VA +L + ER+ ++N +++ ++ + G
Sbjct: 277 RVDFSARTVITPDPNLAIDQVGVPRTVAAKLTVPERVTNFNLNKMNQYVANGPTQHPGAR 336
Query: 380 YVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVL 433
Y+ ++ G + R L+ G I+ R L D D+++ NR P++H S++ VKVL
Sbjct: 337 YIIQEDGTRIDLHIARSHSDRTLQPGFIVERHLQDNDVIIFNRQPTLHKMSMMGHRVKVL 396
Query: 434 PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLS 493
P S+ +N SP++ DFDGD ++ ++PQ++G+R E+ E++ + K ++ QS R ++
Sbjct: 397 PWSTF-RMNLSVTSPYNADFDGDEMNLHVPQSLGSRAEIEEIMMVHKNILTPQSNRPVMG 455
Query: 494 LGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSM 550
+ QD+LT A + + Q+ L M+ P+ + P I ++ +W+GKQL SM
Sbjct: 456 IIQDTLTVARRMTFRDCFIEREQLMHLLMWMPNWDGKIPVPAI--VAPKELWTGKQLVSM 513
Query: 551 LLPPDFE------------------YTFPSKDVYISGGKLISAEGSSWLRDYEGN--LFQ 590
++P T V IS G LIS + +G +
Sbjct: 514 IIPRRINLEGKHSTHEDKVDRATPYLTVHDTKVIISKGVLISGILCKSMLGAKGGGVIHA 573
Query: 591 YLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++ ++ F Q V+ WL + G ++ + D +A +++I +E+ +EA
Sbjct: 574 ITVEHGLEEARQFYGNIQTVINNWLLIHGHSIGIGDA-VADQDTNKRI--EEL---TQEA 627
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
T + +L+ + + + K + R ++E + + L+ A K
Sbjct: 628 --TRSVDELITKAQADDI-KPKPGNTVRE------TFEVEVNTVLNDMVNKAGKS----- 673
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF---PHELS 764
A S N+ AM AGSKG + + Q C+G Q+ P F++ PH +
Sbjct: 674 ---AQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQQNVEGKRIPFGFKYRTLPHFVK 730
Query: 765 CAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
Y P + V NS+ GL+ E F H++ R+
Sbjct: 731 ----------------DDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAVKTAE 774
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M L YDG++RN+ G+ ++Q Y +G
Sbjct: 775 TGYIQRRLVKSMEGLRLNYDGSIRNSNGD-LIQLCYGEDG 813
>gi|157741540|gb|ABV69475.1| RNA polymerase II largest subunit, partial [Endocarpon
diffractellum]
Length = 999
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 170/642 (26%), Positives = 282/642 (43%), Gaps = 122/642 (19%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMSIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 488 RPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWLLHNGFSIGIGDT-VPDIGT 600
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVD---SHMNFLMSAKDSESTRSLQGEHL--SYEK 689
KI +L VD + + + + +E +L G ++ ++E
Sbjct: 601 VEKI-------------------KLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFES 641
Query: 690 QRSAALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGL 748
+ SAAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G
Sbjct: 642 KVSAALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQ 692
Query: 749 QH---SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLEC 802
Q P F++ PH D + +K + VENS+L GL P E
Sbjct: 693 QSVEGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEF 738
Query: 803 FIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
F H++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 739 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
Query: 861 TSTPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+ A+ L + + L+E L+
Sbjct: 798 LD--GAHIESQRV---DVIAMSDGAFEKLFR-VDLMEPKKLV 833
>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
Length = 1764
Score = 173 bits (438), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 259/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 468 MGHQVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGIVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVAKLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 42.4 bits (98), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R I VD +D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLI--VD---EDGSEMAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGSISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
Score = 41.2 bits (95), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 155/581 (26%), Positives = 263/581 (45%), Gaps = 85/581 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGD N+ L E+G+P +A L E + +N RL + E
Sbjct: 353 LMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGRLHELVQNGPNEH 412
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L GD ++ NR PS+H S+
Sbjct: 413 PGAKYVIRSDGT----RIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 469 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPINIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L A+ L V L+ + + ++ P+ + P I W+G
Sbjct: 528 QRNGPLMGIVQDTLAGAYKLCRRDVFLTKEAVMNIMLWVPNWDGVIPPPAIIRPRPRWTG 587
Query: 545 KQLFSMLLP--------PDFEYTFPSKD--VYISGGKLISAEGSSW-LRDYEGNLFQYLI 593
KQ+ SM +P PD + P KD + I G+L+ S + G + +
Sbjct: 588 KQIMSMAIPNIVSLHNAPDSKEDNPLKDEGLLIQSGELLYGLLSKKNIGAASGGIVHIVY 647
Query: 594 KRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
+ + + FL Q+V+ WL G ++ + D + K+ ++++
Sbjct: 648 NEHGPEASMKFLNGVQQVVNYWLLHNGFSIGIGD------TIPDKLTIEKV--------- 692
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQ---GEHL--SYEKQRSAALSQASVDAFKHVF 707
Q+ +D H + + + L+ G ++ ++E + S AL+ A A
Sbjct: 693 -----QVHIDEHKAEVEAYTQQATANELEPLPGMNIRETFESKVSKALNTARDKAGTTTQ 747
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PH 761
+++L N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 748 KSLKDL--------NNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH 799
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP 821
D + A+ + VENS+L GL P E F H++ R+
Sbjct: 800 ---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTA 845
Query: 822 --GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 846 ETGYIQRRLVKALEDVSAKYDGTVRNSLGD-ILQFLYGEDG 885
Score = 43.9 bits (102), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPMLGSIDRQFKCKTCN-QAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCS 113
Query: 104 TIRKER 109
+ +R
Sbjct: 114 KVLADR 119
Score = 41.6 bits (96), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/132 (18%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D +D TR++ +++ +GI+A + L ++ G + HL ++ + ++
Sbjct: 1343 VDGVDSTRTYTNHLWQVVEVFGIEAARSALVRELTQVLAFDGSYVNHRHLALLCDVMTYR 1402
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G + G+ + + + ++ F ++AA G +D+ +G + + G++
Sbjct: 1403 GTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQM 1457
Query: 1249 PSVGTGGHFDII 1260
+GT GHF+++
Sbjct: 1458 APMGT-GHFEVL 1468
>gi|157741538|gb|ABV69474.1| RNA polymerase II largest subunit, partial [Staurothele areolata]
Length = 999
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 152/591 (25%), Positives = 258/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L + ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ G RID L+ G + R + DGD++L NR P
Sbjct: 322 PERHPGARYIIREQG----ERIDLRFHKNTNSITLKAGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVSDGQLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 548 GTGSNGIIHTIFNEFGHETAMSFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEK---- 603
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ D + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 ------IKSEVDKKK-------AEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|157741506|gb|ABV69458.1| RNA polymerase II largest subunit, partial [Neocatapyrenium
rhizinosum]
Length = 999
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 170/640 (26%), Positives = 282/640 (44%), Gaps = 118/640 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL++L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 488 RPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGVVHTIFNEFGH------ETAMAFFNGAQAVINYWLLHNGFSIGIGDTVPDIGTV 601
Query: 635 SR-KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQR 691
+ K+ +D R+ + Q V +E +L G ++ ++E +
Sbjct: 602 EKIKLEVD------RKKAEVERITQSAV------------AEDLEALPGMNVRETFESKV 643
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
SAAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 644 SAALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQS 694
Query: 751 ---SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
P F++ PH D + +K + VENS+L GL P E F
Sbjct: 695 VEGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFF 740
Query: 805 HSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
H++ R+ G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 741 HAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDATVRDSRGN-IVQFIYGEDGLD 799
Query: 863 TPTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+AA+ L + L+E L+
Sbjct: 800 --GAHIESQRV---DVIAMSDAAFEKLFH-VDLMEPKKLV 833
>gi|157741490|gb|ABV69450.1| RNA polymerase II largest subunit, partial [Dermatocarpon luridum]
Length = 999
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 155/594 (26%), Positives = 263/594 (44%), Gaps = 104/594 (17%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL++G + R + DGD++L NR P
Sbjct: 322 PEMHPGARYIIREHN----ERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP S + + G S L +G L L +
Sbjct: 488 RPRWTGKQMISMVLPPALNLVRIDGKSSQSPSERFAPAGDSGLFVADGQLLFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGD------------TV 595
Query: 641 DEIFYGLREAQDTCNFQQLMVD---SHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAAL 695
+I +T + +L VD + + + + +E +L G ++ ++E + SAAL
Sbjct: 596 PDI--------NTVDAIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAAL 647
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---S 751
+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 648 NGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + +K + VENS+L GL P E F H++
Sbjct: 699 RIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMA 744
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 745 GREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|157741510|gb|ABV69460.1| RNA polymerase II largest subunit, partial [Placidiopsis
cinerascens]
Length = 999
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 154/591 (26%), Positives = 256/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNKERLKQFVTNG 321
Query: 373 L-LEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G RID L G + R + DGDI+L NR P
Sbjct: 322 PDIHPGARYIIREQG----ERIDLRFHKDPKSITLLTGWKVERHIMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWIPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVADGLLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 548 GTGANGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEK---- 603
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 -------------IKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|224060165|ref|XP_002300065.1| predicted protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| predicted protein [Populus trichocarpa]
Length = 1394
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 167/604 (27%), Positives = 264/604 (43%), Gaps = 114/604 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-------- 370
GKR + R V++ DPN+K+ E+ IP +A L ER+ N E+L C++
Sbjct: 359 GKRVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPG 418
Query: 371 FRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
R++ + G R R + L+ G I++R L DGD+VL NR PS+H S++
Sbjct: 419 ARMVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRA 478
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+++P ++ N C+P++ DFDGD ++ ++PQ AR E L+ + L ++G
Sbjct: 479 RIMPWRTL-RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEI 537
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSV------WSG 544
L++ QD LT++ L+ + C + D+ + SV W+G
Sbjct: 538 LVASTQDFLTSSFLITRKDTFYDR---AAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTG 594
Query: 545 KQLFSMLLPP-------------DFEYTFPSKD--------------VYISGGKLISAE- 576
KQLFS+LL P + Y+ P+K+ VY +LIS +
Sbjct: 595 KQLFSVLLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQL 654
Query: 577 GSSWLRDYEGN---LFQYLIKRYRDKVLDFLYAAQEVL-------CEWLSVRGMTVSLSD 626
G + L + GN L+ L++ Y YAA + W+ G ++ + D
Sbjct: 655 GKATLGN--GNKDGLYSILLRDYN------AYAAATCMNRLAKLSARWIGNHGFSIGIDD 706
Query: 627 LYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLS 686
+ K L+DE + CN +L+ D + L ++T++L+ E
Sbjct: 707 VQPG------KKLIDEKGKTISNGYRHCN--KLIADYNGGRLALKSGCDATQTLETEI-- 756
Query: 687 YEKQRSAALSQASVDA-FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+R L + + D K + W NS L M + GSKG+ + + Q C
Sbjct: 757 --TERLNKLREEAGDVCMKELHW------------RNSPLIMSQCGSKGSPINISQMIAC 802
Query: 746 LGLQH---SLAPLSF---RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
+G Q S AP F PH T AK + V NSF +GL+
Sbjct: 803 VGQQSVGGSRAPDGFIDRSLPH---------FPRKSKTPAAKGF-----VANSFYSGLSA 848
Query: 800 LECFIHSVTSRDS---SFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
E F H++ R+ + AD G + RRL + DLC YD TV++A G IVQF Y
Sbjct: 849 TEFFFHTMGGREGLVDTAVKTAD-TGYMARRLSKGLEDLCVQYDNTVQDA-GGGIVQFLY 906
Query: 857 NIEG 860
+G
Sbjct: 907 GDDG 910
Score = 47.0 bits (110), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + + R+G PN C +CG C GHFG++ + + +LS I +L IC
Sbjct: 59 VGGLLDTRMGAPNKHGTCQTCGG-SFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICK 117
Query: 101 KC-KTIRKERQKGAGSSRKEQPRV 123
C + + E+ + + R PR
Sbjct: 118 SCSRVLVDEKLRKSYLKRMRNPRT 141
>gi|157741614|gb|ABV69512.1| RNA polymerase II largest subunit, partial [Verrucaria tristis]
Length = 988
Score = 173 bits (438), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 153/591 (25%), Positives = 255/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +RL ++
Sbjct: 251 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDRLKRLVTNG 310
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ G RID L+ G + R + DGDI+L NR P
Sbjct: 311 PEHHPGARYIIREQG----ERIDLRFHKNTGEITLKTGWKVERHIMDGDIILFNRQPX-- 364
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 365 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELHQLCMVPLN 418
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 419 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 476
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 477 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLXVSDGQLMFGLFNKKSV 536
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + R
Sbjct: 537 GTGSNGTIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVER---- 592
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 593 -------------IKFEVDKKKAEVEKITQSAVAEDLEALPGMNVRETFESKVSAALNGA 639
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 640 RDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 690
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 691 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 736
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 737 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYGEDG 786
>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
Length = 871
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 157/600 (26%), Positives = 274/600 (45%), Gaps = 68/600 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 149 IRSNLMGKRVDFSARTVISGDPNLELDQVGVPLSIAKTLTYPEIVTPYNIDRLTQLVKNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 209 PNQHPGAKYVIRDNGT----RIDLRYNKRAGDLQLQYGWKVERHIVDEDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ + EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETKAELSQLCAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDS 540
+++ QS + + + QD+L + + + + Q+ + + P + P I
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGVRKMTLRNNFIDYEQVLNMLYWIPDWDGNVPPPAIIKPKP 383
Query: 541 VWSGKQLFSMLLPP--------DFEYTFPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQL S +P D KD + + G + + G L
Sbjct: 384 LWTGKQLLSAAIPKGIHLQRFDDGTTMLSPKDNGILVVDGEIIFGVVDKKTVGSSAGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ K V L++ Q+V+ W G ++ + D + + + M EI +
Sbjct: 444 HVVTKEKGPYVCAKLFSNIQKVVNYWFLHNGFSIGIGD------TIADEKTMLEITEAIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
A+ +++ ++ N L+SAK + R S+E L++A A +
Sbjct: 498 IAK--VKVEEVTKEAQEN-LLSAKHGMTLRE------SFEDNVVRFLNEARDKAGRSAEV 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
++++L N++ M +GSKG+ + + Q S C+G Q R P +
Sbjct: 549 NLKSL--------NNVKQMVSSGSKGSFINIAQMSACVGQQSVEGK---RIPFGFADRTL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
RL+ + D+ YDGT RN+ GN ++QF Y +G G + Q + ++ S+AA+
Sbjct: 653 RLVKALEDIMVHYDGTTRNSLGN-VIQFIYGEDGLD--AGHVEKQSIDTIPG---SDAAF 706
>gi|157741544|gb|ABV69477.1| RNA polymerase II largest subunit, partial [Staurothele fissa]
Length = 999
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 152/591 (25%), Positives = 258/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L + ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNAEKLKQLVVNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ G RID L+ G + R + DGD++L NR P
Sbjct: 322 PERHPGARYIIREHG----ERIDLRFHKNTDSITLKAGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVSDGQLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 548 GTGSNGIIHTIFNEFGHETAMSFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEK---- 603
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
++ D + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 ------IKSEVDKKK-------AEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLE-KGELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQVLSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + I LL +L+ ++LE GS+
Sbjct: 888 GSDAAFERRYR-IDLLNPDHILD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
anathema]
Length = 1690
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 183/684 (26%), Positives = 297/684 (43%), Gaps = 130/684 (19%)
Query: 269 ELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDIS----NS--------SGLRWIKDV 316
+LS +V++ +I KL LD ++ + + I+++ NS +G R IK +
Sbjct: 179 QLSTIVKNNAQIRKLKLDGAAPINIQDTLDVLQINVACFFDNSVPSLEKAKNGNRPIKSL 238
Query: 317 --------------VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNW 362
++GKR D R V+T DP + L E+G+P VA L + E ++ N
Sbjct: 239 SERLRGKEGRVRGQLMGKRVDFSARSVITPDPTLALNELGVPRTVASNLTVPEMVSPLNI 298
Query: 363 ERLSVCI-SFRLLEKGELYVCRKGGLVRIRRIDALELGD-------IIYRPLTDGDIVLI 414
RL+ + + G YV R G RI GD II R L DGD V+
Sbjct: 299 HRLAALVRNGPGTYPGAKYVIRDDGA----RIALTSRGDMPIVPGYIIERHLMDGDHVVF 354
Query: 415 NRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
NR PS+H S++ V+VLP SS +N +P++ DFDGD ++ ++P ++ A E+
Sbjct: 355 NRQPSLHKMSMMGHQVRVLPYSSF-RLNLSVTTPYNADFDGDEMNMHVPNSLEAISEVKN 413
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM---FCPHRFLSP 531
L+A+ Q++ Q + + QDSL L+ L+ M L + + P + P
Sbjct: 414 LMAVPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFLTEDVMMNLALVISYDPDKIPQP 473
Query: 532 DIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQY 591
I + +W+GKQ FSMLLP D Y Y + + +S E ++ +Y +L
Sbjct: 474 AILR--PKPLWTGKQAFSMLLPKDLSYKG-KCGFYFNAEQSVSREVAAAQEEYMNSLLDS 530
Query: 592 LIK---------------------------RYRDK----VLDFLYAAQEVLCEWLSVRGM 620
+++ ++D+ DFL Q + ++ RG
Sbjct: 531 VVRIKKGQLHTGVITNKAVGKSGQGSIIHILWKDQGPMAARDFLSRVQLLTNAYILTRGF 590
Query: 621 TVSLSDLYLASHSCSRKILMDEIFYGLREAQ---DTCNFQQLMVDSHMNFLMSAKDSEST 677
+V D + + + EI R + D +L V + + L+ + ++++
Sbjct: 591 SVGTEDTLADPDTL--QAVKAEIEGAKRNVKIHIDDARAGRLKVQAGRS-LVESFEAKTN 647
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLL 737
+SLQ ALS A + + KY DN+ M ++GSKG+ +
Sbjct: 648 KSLQD-----------ALSNAGKKSLSSL---------KY---DNNFKLMIESGSKGSEM 684
Query: 738 KLVQHSLCLGLQHSLAP-LSFRF-----PHELSCAAWNRLRAGDNTECAKSYIPSAVVEN 791
+ Q + +G Q+ ++F F PH R D A+ + VEN
Sbjct: 685 NICQITGMVGQQNVEGKRIAFGFQRRTLPH---------FRKDDYEPEARGF-----VEN 730
Query: 792 SFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYG 848
S+++GL+P E F H + R+ D A G + R+LM M D+ YD TVRNA G
Sbjct: 731 SYVSGLSPQEFFFHMMGGRE-GLIDTAVKTSESGYIQRKLMKSMEDISVKYDTTVRNAAG 789
Query: 849 NQIVQFSYNIEGTSTPTGEIGDQP 872
I+QF+Y +G E D P
Sbjct: 790 -MILQFAYGEDGIDGTAHENQDIP 812
>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
Length = 1737
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 156/594 (26%), Positives = 259/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ L + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGVVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGH---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 40.8 bits (94), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGLKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.8 bits (94), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGTISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|397135842|gb|AFO11416.1| RNA polymerase I, partial [Vanderwaltozyma polyspora]
Length = 871
Score = 172 bits (437), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 261/582 (44%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPMQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L L + Q+ + + P P I K
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIEFDQVLNMLYWVPDWDGVIPQPAILK--P 381
Query: 539 DSVWSGKQLFSMLLPPDFEY--------TFPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQ+ S+ +P KD + I G + + G
Sbjct: 382 KPLWTGKQILSIAIPKGIHLQRFDEGTTMLSPKDNGMLVIDGQIVFGVVDKKTVGSSSGG 441
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V ++ Q+V+ WL G + + D + M EI
Sbjct: 442 LIHVVTREKGPQVCAKMFGNIQKVVNFWLLHNGFSTGIGDTIADGET------MKEITET 495
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ +++ ++ N L++AK + R S+E L++A A +
Sbjct: 496 IAEAKKKV--EEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGR-- 544
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
LA + N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 545 ------LAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 598
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 599 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 644
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YD T RN+ GN ++QF Y +G
Sbjct: 645 AETGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDG 685
>gi|157741528|gb|ABV69469.1| RNA polymerase II largest subunit, partial [Placocarpus schaereri]
Length = 999
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 161/616 (26%), Positives = 267/616 (43%), Gaps = 101/616 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGD++L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMD 641
D + F AQ V+ WL G ++ + D + + K+ +D
Sbjct: 550 GSNGIIHTIFNEFGHDTAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKLEVD 609
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
R+ + Q+ V +E +L G ++ ++E + SAAL+ A
Sbjct: 610 ------RKKAEVERITQMAV------------AEDLEALPGMNVRETFESKVSAALNGAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 652 DEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RL+ + ++ YD TVR++ GN IVQF Y +G I
Sbjct: 749 LIDTAVKTAETGYIQHRLVKALEEVTVKYDSTVRDSRGN-IVQFIYGEDGLD--GAHIES 805
Query: 871 QPVGSLSACAISEAAY 886
Q V A+S+AA+
Sbjct: 806 QRV---DVIAMSDAAF 818
>gi|308491392|ref|XP_003107887.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
gi|308249834|gb|EFO93786.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
Length = 1406
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 154/597 (25%), Positives = 266/597 (44%), Gaps = 77/597 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+++ ++G+P VA L E +N+ N E++ + I+ + G
Sbjct: 359 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDIHPG 418
Query: 378 ELY-VCRKGG---LVRIRRIDAL----ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y V +K G L++ + D L LGD + R L D D+VL NR PS+H S+++
Sbjct: 419 ANYLVDKKTGNKKLLKYGKRDELAKLLRLGDTVERHLDDNDVVLFNRQPSLHKISIMSHR 478
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV+P N C+P++ DFDGD ++ ++PQ A+ E +EL+ + LI +SG
Sbjct: 479 AKVMP-GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGE 537
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---------QMFCPHRFLSPDIFKISKDS 540
L++ QD +T +LL L ++ + + R P I K +
Sbjct: 538 PLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRKPVE-- 595
Query: 541 VWSGKQLFSMLLPPD----FEYTFPSKDVYISGG-KLISAEGSSWLRD------------ 583
+W+GKQL +++ PD +K+ SG +L S + +R+
Sbjct: 596 LWTGKQLIELIIRPDKGSQISLNLTAKNKSYSGNLELCSKDSYVIIRNSVLLAGVLDKSL 655
Query: 584 ----YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
+ N+F L++ Y D +D ++ + +LS RG ++ + D+ + K
Sbjct: 656 LGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSERLLQEKG 715
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ + Y + + + + + + + E+ ++ LS + + +
Sbjct: 716 QLVDTGY-----EQCAQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVC-- 768
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
++NL SK N+ L M GSKG+ + + Q C+G Q A R
Sbjct: 769 -----------LRNL-----SKYNAPLTMAVCGSKGSFINISQMIACVGQQ---AISGHR 809
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P + T AK + V NSF +GL P E F H++ R+
Sbjct: 810 PPDGFEERSLPHFERKKKTPEAKGF-----VANSFYSGLTPTEFFFHTMGGREGLVDTAV 864
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G + RRL+ + DLC +YDGTVR++ G+ +++F + +G E D V
Sbjct: 865 KTAETGYMQRRLVKCLEDLCASYDGTVRSSVGD-VIEFVFGEDGLDPAMMEAKDGSV 920
Score = 42.0 bits (97), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G+ T C++CG C GHFG+ + H F +LL IC
Sbjct: 58 DPRMGVSTKTGTCATCGL-GLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCIC------ 110
Query: 106 RKERQKGAGSS---RKEQPRVCKYCVRNP 131
K+R SS EQ RV V NP
Sbjct: 111 -KQRNFQNCSSILLNPEQHRVFSRQVMNP 138
>gi|157741602|gb|ABV69506.1| RNA polymerase II largest subunit, partial [Verrucaria polysticta]
Length = 999
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 172/668 (25%), Positives = 296/668 (44%), Gaps = 119/668 (17%)
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
+LDK+ K R K+I + ++ ++GKR D R V+TGDPN+ L E+G+
Sbjct: 236 NLDKAQHKSG---RPIKSIRVRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292
Query: 344 PCQVAERLQISERLNSWNWERLSVCIS-FRLLEKGELYVCRKGGLVRIRRID-------- 394
P +A L E + +N RL ++ G Y+ R+ RID
Sbjct: 293 PRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPGARYIIRENN----ERIDLRYHKDTS 348
Query: 395 --ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
AL+ G + R + DGD++L NR P V+V+P S+ +N +P++ D
Sbjct: 349 QIALKTGWKVERHIMDGDVILFNRQPX-------XXRVRVMPYSTF-RLNLSVTTPYNAD 400
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGD ++ ++PQ+ R EL +L + +++ Q L+ + QD+L + + V L
Sbjct: 401 FDGDEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFL 460
Query: 513 SHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLPPDF------------- 556
S ++ + ++ P P IFK W+GKQ+ SM+LPP
Sbjct: 461 SREEVMNIMLWVPDWDGVIPQPAIFK--PRPRWTGKQMISMVLPPALNLVRIDGKASQPP 518
Query: 557 -EYTFPSKD--VYISGGKLI--------SAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLY 605
E P+ D ++++ G+L+ GS+ + N F + + + F
Sbjct: 519 IERFAPAGDSGLFVADGELMFGLFNKKSVGTGSNGIVHTIFNEFGH------ETAMAFFN 572
Query: 606 AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHM 665
AQ V+ WL G ++ + D + +++I Y + + + + +
Sbjct: 573 GAQTVINYWLLHNGFSIGIGD------TVPDIGTVEKIKYEVDKKK-----------AEV 615
Query: 666 NFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD-N 722
+ + +E +L G ++ ++E + SAAL+ A +A A + KD N
Sbjct: 616 ERITQSAVAEDLEALPGMNVRETFESKVSAALNGARDEA---------GTATENSLKDIN 666
Query: 723 SLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSCAAWNRLRAGDN 776
+ + M +AGSKG+ + + Q + +G Q P F++ PH D
Sbjct: 667 NAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPH---------FAKDDY 717
Query: 777 TECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRD 834
+ +K + VENS+L GL P E F H++ R+ G + RRL+ + +
Sbjct: 718 SAASKGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEE 772
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQPIS 894
+ YDGTVR++ GN IVQF Y +G I Q V A+S++A+ L + +
Sbjct: 773 VTVKYDGTVRDSRGN-IVQFVYGEDGLD--GAHIESQRV---DIIAMSDSAFEKLFR-VD 825
Query: 895 LLETSPLL 902
L+E L+
Sbjct: 826 LMEPKKLV 833
>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 1469
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 161/617 (26%), Positives = 267/617 (43%), Gaps = 116/617 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+++ E+ +P +VA+ L ER+ +N +L ++ I+ + G
Sbjct: 368 GKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPERVTRYNKAKLQALIINGPDVHPG 427
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ +K V R + L +GDI+ R + DGDIVL NR PS+H S+++
Sbjct: 428 ANYLVKKHEDVKRNLRYGDRNKLAKQLAVGDIVERHIEDGDIVLFNRQPSLHRLSIMSHF 487
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 488 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGE 546
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL-----SPDIFKISKDSVWSG 544
+++ QD +T ++L+ Q+ L P IFK + +W+G
Sbjct: 547 PIIAATQDFITGSYLISNKDSFYDRATFTQMLAMMSDGALHVDIPPPAIFKPA--FMWTG 604
Query: 545 KQLFSMLL----------------------PPDFEYTFPSKD--VYISGGKLISA--EGS 578
KQLFS+L+ PP D V I +++S + S
Sbjct: 605 KQLFSLLIRPNRQSKVVINLDAKNKTFVPPPPGMPSEMSPNDGFVVIRNSQILSGVMDKS 664
Query: 579 SWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ + ++F +++ Y D+ + + ++ +L RG ++ ++D+ + +RK
Sbjct: 665 TLGDGKKHSVFYTILRDYGADEAANAMNRMAKLCARYLGNRGFSIGINDVTPGENLKNRK 724
Query: 638 ILMDEIFY------------GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
+ EI Y G E Q CN +Q + ++ + L+S
Sbjct: 725 EQLVEIAYRKCDELITLFKTGKLETQPGCNEEQTL-EAKIGGLLS--------------- 768
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
V ++ + K K N+ L M GSKG+ L + Q
Sbjct: 769 -------------------KVREEVGEVCIKELDKSNAPLIMATCGSKGSTLNVSQMVAV 809
Query: 746 LGLQ----HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLN 798
+G Q H + P F+ PH L + +KS V NSF +GL+
Sbjct: 810 VGQQIISGHRV-PDGFQDRSLPHFL--------------KNSKSPQSKGFVRNSFFSGLS 854
Query: 799 PLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
P E H+++ R+ G +RRLM M DL YD TVRN+ N IVQF+Y
Sbjct: 855 PPEFLFHAISGREGLVDTAVKTAETGYTSRRLMKSMEDLSAGYDETVRNS-SNGIVQFNY 913
Query: 857 NIEGTSTPTGEIGDQPV 873
+G E +PV
Sbjct: 914 GGDGLDPLDMEGDARPV 930
Score = 46.6 bits (109), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+ ++G+ + + EC++C + C GHFG IK + H + I ++L +IC C +
Sbjct: 55 DTKMGISSKSGECATCHG-NLNTCHGHFGHIKLALPVFHVGYFKSIIQVLQTICKTCSAV 113
>gi|321473486|gb|EFX84453.1| hypothetical protein DAPPUDRAFT_209553 [Daphnia pulex]
Length = 1387
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 181/698 (25%), Positives = 310/698 (44%), Gaps = 105/698 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------- 369
GKR D R V++ DPN+++ ++G+P VA+ L R+N N E + +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDQVGVPELVAKILTFPTRVNEANIELMRKLVRNGADVHPG 417
Query: 370 SFRLLEK--GELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+ L EK G + G + R L+LGD+I R + D DIVL NR PS+H S++
Sbjct: 418 ANYLQEKSSGMRKFLKYGNRENLAR--NLKLGDLIERHMMDEDIVLFNRQPSLHKLSIMC 475
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
K+LP N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++
Sbjct: 476 HRAKILP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAWILMGNKYNLVTPRN 534
Query: 488 GRNLLSLGQDSLTAAHLL-MEDS---------VLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
G L++ QD +T A+LL ++D+ ++ S L ++ M + P I K +
Sbjct: 535 GELLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVI--KLPPPCIQKPA 592
Query: 538 KDSVWSGKQLFSMLLPPD-------------FEYTFPSKDVYISGGKLI---------SA 575
++WSGKQ+FS++L P+ EY+ +++ ++ G L+
Sbjct: 593 --ALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSKKNEEFCVNDGFLLVRNSEVLAGCV 650
Query: 576 EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE----WLSVRGMTVSLSDLYLAS 631
+ S+ + N+F L++ Y + DF A LC ++ RG ++ + D+
Sbjct: 651 DKSTIGSGSKINIFYVLLRDYGE---DFAIQAMWKLCRVASYYMMNRGFSIGIGDV---- 703
Query: 632 HSCSRKILMDEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ 690
K L+ E L C+ + +L+ + L + ES S + LS +
Sbjct: 704 --TPGKTLLKEKQILLDSGYSKCDEYIRLLTIGQLPCLPGCNEEESLESKILKELSGIRD 761
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
++ + + + NS L M K+GSKG+ + + Q C+G Q
Sbjct: 762 QAGEVCKKELHP------------------SNSPLVMSKSGSKGSYINISQMIACVGQQ- 802
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
A R P+ + + AK + V NSF +GL P E F H++ R
Sbjct: 803 --ALNGKRVPNGFEDRSLPHFKRHSKIPAAKGF-----VSNSFYSGLTPTEFFFHTMGGR 855
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ + DLC YD TVRN+ G +I+QF Y +G E
Sbjct: 856 EGLVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVRNSAG-EIIQFVYGGDGLDPTYMEA 914
Query: 869 GDQPVGSLSACAISEAAYSALDQ-PISLLETSPLLNLKNVLECGSKKS---NADQTMSLF 924
D+PV A +AA D+ P+ +E N +++ S K+ + + +F
Sbjct: 915 KDRPVDFQRALDHIKAASPYPDEDPLDDIELQQAFN--TIMDTDSFKTLGIDFKHELRVF 972
Query: 925 LSNKLGKRRHGFEYGALE------VKNHLECLMLSDIV 956
L +++ + + + +E V+ HLE + + +V
Sbjct: 973 LESQVKRIKSVRKIFQMEGRPLHPVEKHLERITVGQLV 1010
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 26/206 (12%)
Query: 1067 LLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCH 1126
L K V+KG + + I D +K + YL V + + +
Sbjct: 1194 LPKVVIKGLPTVSRAVINIDDTRKPPR--------YYLLVEGDNMREVMATYG------- 1238
Query: 1127 QIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLS 1186
+ + + +NI GI+A ++ + G ++ H+ ++++ +S
Sbjct: 1239 -----VQGSSTTSNNILEVFSTLGIEAAKATIAKEIQFTMESHGMSVDRRHVALLSDLMS 1293
Query: 1187 ATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWG 1246
GE +G+ GLA ++ S + A F AA G D + G + + G
Sbjct: 1294 CRGEILGITRNGLAKMKE-----SVLMLASFERTSDHLFDAAYYGQEDEVTGVSECIIMG 1348
Query: 1247 KVPSVGTGGHFDIIYSGEGRTLSKPV 1272
++GTG F ++Y + KPV
Sbjct: 1349 IPMAIGTGA-FKLLYKTGKKDPPKPV 1373
>gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Abacion magnum]
Length = 624
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 148/595 (24%), Positives = 261/595 (43%), Gaps = 100/595 (16%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R
Sbjct: 3 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + DGD+V+ NR P++H S++ ++V P
Sbjct: 63 G----ERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVFPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + +Q+I QS R ++ +
Sbjct: 119 STF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQSNRPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V + M L MF P + P I K +W+GKQLFS+++
Sbjct: 178 QDTLTAVRKMTKRDVFIEKEHMMNLLMFLPIWDGKVPQPAILK--PKPLWTGKQLFSLII 235
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL 592
P PD E P K + K++ G L G+L +
Sbjct: 236 PGNVNCIRTHSTHPDDEDESPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIV 295
Query: 593 IKRYRDKVLDFLY-AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA- 650
+ +V + Y Q V+ WL + G T+ + D + +I +++A
Sbjct: 296 MLELGWEVAGYFYWHIQTVINNWLLLEGHTIGIGDTIADPQTYV------DIQNSIKKAK 349
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
QD +++ +H + L + ++ + + L+ + ++ +Q S+ F
Sbjct: 350 QDVI---EVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEF---- 402
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR---FPH 761
N+ AM +G+K + + + Q C+G Q+ P FR PH
Sbjct: 403 --------------NNFKAMVVSGAKXSKINISQVIACVGQQNVEGRRIPFGFRKRTLPH 448
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 449 FIK----------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 492
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ M + YDGT+RN+ Q++Q Y +G E+ + P
Sbjct: 493 TAETGYIQRRLIKAMESVMVTYDGTIRNSVC-QLIQLRYGEDGLDGGAVEMQNLP 546
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 149/578 (25%), Positives = 251/578 (43%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L + E
Sbjct: 353 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R + DGD ++ NR PS+H S+
Sbjct: 413 PGAKYVVRSDG----SRIDLRHHKRAGAISLEYGWKVERHIVDGDFIVFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ L + +++
Sbjct: 469 MGHRVRVMPYST-FRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIMNLCMVPLNIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L + + ++ + + ++ P P I K W
Sbjct: 528 QRNGPLMGIVQDTLAGVYKMCRRDCFVTKEHLMNILLWVPEWDGVIPQPAILK--PRPRW 585
Query: 543 SGKQLFSMLLPPDFEYTFPS---KDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+GKQ+ SM++P P+ +D + L+ EG + G +
Sbjct: 586 TGKQVVSMIIPKIVNLNMPNDGREDAPLKDDGLLVHEGELMYGLMAKKNIGATSGGIIHI 645
Query: 592 LIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ D + F Q V+ WL G ++ + D + S KI
Sbjct: 646 IFNEMGSDAAMAFFNGCQRVVNYWLLHNGFSIGIGDT-VPDKSTIAKI------------ 692
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+ Q+ V + + + +A ES + ++E Q S AL+ A A +
Sbjct: 693 EGAIGAQKEEV-AKLTAMATANQLESLPGMNVRE-TFESQVSKALNTARDQAGTKTEGSL 750
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFRF---PHELS 764
++ +N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 751 KD--------NNNAVTMARSGSKGSTINISQMTALVGQQSVEGKRIPFGFKYRTLPH--- 799
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 800 ------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 848
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 849 YIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 885
Score = 47.8 bits (112), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +PRLG + +C++C ++ C GHFG I+ + HP FL KLL +C C
Sbjct: 55 LNDPRLGSIDRQFKCATCD-QNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCG 113
Query: 104 TIRKERQKGA 113
+ +R A
Sbjct: 114 RVLLDRSNPA 123
>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
Length = 1024
Score = 172 bits (437), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 153/585 (26%), Positives = 263/585 (44%), Gaps = 88/585 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+ GDPNI++ ++G+P +A+ L E + +N ++L + E
Sbjct: 279 LMGKRVDFSARTVIAGDPNIEIDQVGVPRSIAKNLTYPEVVTPYNIDKLQEMVQNGPNEH 338
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L++G + R L D D+V+ NR PS+H S+
Sbjct: 339 PGAKYVIRDSG----ERIDLRYSKRGGDIPLQIGYRVERNLMDDDVVIFNRQPSLHKMSM 394
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + KQ+++
Sbjct: 395 MGHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHLPQSEETRAEIRELCMVPKQIVSP 453
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q+ + ++ + QD+L A + + L+ + L + P L P + +WSG
Sbjct: 454 QANKPVMGIVQDTLCALLMFTKRDTLMRLDMVMSLLLKVPGWDGLIPTPCILKPQPLWSG 513
Query: 545 KQLFSMLLPPDFE-YTF----PSKD----------VYISGGKLISA-EGSSWLRDYEGNL 588
KQ+FS+++P YTF P + V I G+L+S + G +
Sbjct: 514 KQIFSLIIPKGINCYTFFKDHPDNETAWCSPGDSRVVIENGELLSGIICKQTVGAVRGGI 573
Query: 589 FQYLIKRYRDKVLDFLYAA-QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ + + Q V+ W+ G ++ + D +A S +
Sbjct: 574 VHVIFNELGSEAAKIFFGGTQRVVNLWMLSNGFSIGIGDT-IADDSAMESV--------- 623
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTR--SLQGEHL--SYEKQRSAALSQASVDAF 703
++ +S+M KD+ R L G L ++E + L++A A
Sbjct: 624 ---------GNIITESYMRVDEMIKDTIEDRLDCLPGMTLKETFESGTNLELNRARDLAG 674
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PLSFR-- 758
K V ++ N++ M +GSKG+ + + Q + +G Q+ P FR
Sbjct: 675 KSVQTRLKEC--------NNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGRRIPFGFRNR 726
Query: 759 -FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + ++ + VENS+L GL P E + H++ R+
Sbjct: 727 TLPH---------FTKDDYSPQSRGF-----VENSYLRGLTPQEFYFHAMGGREGLIDTA 772
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ I++F+Y +G
Sbjct: 773 VKTAETGYIQRRLVKALEDIMVHYDGTVRNSLGS-IIEFAYGHDG 816
>gi|157741632|gb|ABV69521.1| RNA polymerase II largest subunit, partial [Verruculopsis
poeltiana]
Length = 988
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/591 (25%), Positives = 254/591 (42%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL + +
Sbjct: 251 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNMERLKNFVANG 310
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 311 PQMHPGARYIIRENN----ERIDLRYHKNTSEIALKKGWKVERHIMDGDVILFNRQPX-- 364
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL +L +
Sbjct: 365 -----XXRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEETRAELAQLCMVPLN 418
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS + + ++ P P I K
Sbjct: 419 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIMLWVPDWDGVIPQPAILK--P 476
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 477 RPRWTGKQIISMVLPPALNLVRIDGKPGQPPGERFAPAGDSGLFVADGQLMFGLFNKKSV 536
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 537 GTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDVGTVEK---- 592
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 593 -------------IKFEVDKKKTEVERITQSAVAEELEALPGMNVRETFESKVSAALNGA 639
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 640 RDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 690
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 691 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 736
Query: 812 SSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 737 GLIDTAVKTAEAGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 786
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/590 (25%), Positives = 259/590 (43%), Gaps = 99/590 (16%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N RL + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHHLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QDSL A+ + + + + ++ P+ + P + W+G
Sbjct: 527 QKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTG 586
Query: 545 KQLFSMLLPPDFEYTFPSKDVYISGGKLISAE---GSSWLRDYEGNLFQYLIKRYR---- 597
KQL SM++P + P S G +A+ + L G L L+++
Sbjct: 587 KQLISMVIPKEISLHSPE-----SSGAQDNADIPLKDTGLLIQSGELLYGLLRKKNIGSA 641
Query: 598 --------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643
+ + FL Q+V+ WL G ++ + D + K ++++
Sbjct: 642 AGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQTIEKV 695
Query: 644 FYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
Q+ +D+ + L + + +L G ++ ++E + S AL+ A
Sbjct: 696 --------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALNSA 741
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPL 755
A +++ N+ + M ++GSKG+ + + Q + +G Q P
Sbjct: 742 RDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPF 793
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 794 GFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMAGREG 839
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 840 LIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 41.2 bits (95), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.8 bits (94), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV--VD---DDGAEIAKKDDDKCTQWYLDTSGSALRDV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGSISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
Length = 1886
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 154/589 (26%), Positives = 263/589 (44%), Gaps = 82/589 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN++L ++G+P +A+ + I E + N + L R
Sbjct: 330 VRGNLMGKRVDFSARSVITPDPNLELDQLGVPMAIAQNVTIPEVVTPQNIDELR-----R 384
Query: 373 LLEKG------ELYVCRKG------GLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSI 420
L+E G Y+ R G++ R LE G + R L + D VL NR PS+
Sbjct: 385 LVENGPHRYPGAKYIIRHDERQIDIGILNERSDVHLEYGYKVERHLRNDDYVLFNRQPSL 444
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
H S++ K+LP S+ +N SP++ DFDGD ++ ++PQ+ + E+ E++A+
Sbjct: 445 HKMSIMGHRAKILPFSTF-RLNLSVTSPYNADFDGDEMNMFVPQSYESMAEVKEIMAVPN 503
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM----FCPHRFLSPDIFKI 536
Q+I+ QS + ++ + QDSL L + L M + +P + K
Sbjct: 504 QIISPQSNKPVMGIVQDSLLGIMLFTRKDNFIDRNTAMNLMMWLGKYSDKVLPTPAVLK- 562
Query: 537 SKDSVWSGKQLFSMLL--------------PPDFEYTFPSKD--VYISGGKLISAEGSSW 580
+W+GKQ+ S+++ PP P+++ V I G+LI+ +
Sbjct: 563 -PKPLWTGKQILSLVIPDVNLTKFFEAPPKPPQRRNWCPTQETIVLIQRGQLITGHLNKA 621
Query: 581 LRDYEGNLFQYLIKRY--RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
++I + D FL AQ V+ +WL G TV + D + + K
Sbjct: 622 TAGSSSQGLIHIIWKECGPDGAKQFLSNAQNVVNQWLIEHGFTVGVQD------TIASKK 675
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALS 696
MD I L+ ++ + L+ + + G+++ S+E + L+
Sbjct: 676 TMDGIHQKLQH-----------YNNKVARLIQKAEQGKLTTQPGKNMMESFEYLVNNNLN 724
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
QA +A + F D+ N + M AGSKG + + Q C+G Q+
Sbjct: 725 QARDEAGQLAFKDLDPW--------NKIQNMVGAGSKGTNINISQIMGCVGQQNVEGK-- 774
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R D +K + V N++++GL+P E F H++ R+ D
Sbjct: 775 -RVQFGFKSRTLPHFPKHDYGPASKGF-----VINNYISGLDPPEFFFHAMGGRE-GLID 827
Query: 817 NA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
A G + RRL+ + D+ YDGTVRN+ G Q++QF Y +G +
Sbjct: 828 TAVKTSETGYIQRRLVKALEDIMVKYDGTVRNS-GEQVIQFLYGEDGIA 875
>gi|354544265|emb|CCE40988.1| hypothetical protein CPAR2_110260 [Candida parapsilosis]
Length = 1446
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 159/596 (26%), Positives = 268/596 (44%), Gaps = 74/596 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + I+ + G
Sbjct: 372 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQGLIINGPDVHPG 431
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ RI+ +L++GD++ R + DGD+VL NR PS+H S++A
Sbjct: 432 ANYVMKQNEAGKRNLRFGDRIKLAKSLQVGDVVERHIEDGDVVLFNRQPSLHRLSILAHY 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 492 AKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 550
Query: 490 NLLSLGQDSLTAAHLL-MEDSVLLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQ 546
+++ QD +T ++L+ +DS +Q L M +F P + +W+GKQ
Sbjct: 551 PIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADIQFDIPPPTIVKPIMLWTGKQ 610
Query: 547 LFSMLLPPDF-----------EYTF--PSKD-----------VYISGGKLISA--EGSSW 580
+FS+L+ P+ TF P+K V I G +++S + S+
Sbjct: 611 VFSLLIKPNRHSKVVINLNAKNKTFHPPAKGLPSEMSPNDGFVIIRGSQILSGLMDKSTL 670
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ ++F +++ Y + LC +L RG ++ ++D+ A +K L
Sbjct: 671 GDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPAHELKQKKEL 730
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
M E Y L D ++ K T+ E + E + LS+
Sbjct: 731 MVEQAY-------------LKCDQLIDLYNRGK--LETQPGCNEEQTLEAKIGGLLSKVR 775
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
+ ++ +L N+ L M GSKG+ L + Q +G Q R
Sbjct: 776 EEVGDVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---IISGHRV 824
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P + T +K + V NSF +GL+P E H+++ R+
Sbjct: 825 PDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLSPPEFLFHAISGREGLVDTAVK 879
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G ++RRLM + DL + YD TVRN+ N IVQF+Y +G E +PV
Sbjct: 880 TAETGYMSRRLMKSLEDLSSQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAKPV 934
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
++G+ + ++EC++C + +C GHFG I+ + H + + +L +C C I
Sbjct: 58 KMGISSNSSECATCHG-NLASCNGHFGHIRLALPVFHVGYFKAVISVLQCVCKNCGAI 114
>gi|157741616|gb|ABV69513.1| RNA polymerase II largest subunit, partial [Verrucaria viridula]
Length = 999
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 167/639 (26%), Positives = 281/639 (43%), Gaps = 116/639 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL++L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 488 RPRWTGKQMVSMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDIGTV 601
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ ++ D S + + + +E +L G ++ ++E + S
Sbjct: 602 EK----------IKSEVDKKK-------SEVERITQSAVAEELEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDATVRDSRGN-IVQFIYGEDGLD- 799
Query: 864 PTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+AA+ L + + L+E L+
Sbjct: 800 -GAHIESQRV---DVIAMSDAAFEKLFR-VDLMEPKKLV 833
>gi|157741518|gb|ABV69464.1| RNA polymerase II largest subunit, partial [Placidium lacinulatum]
Length = 989
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 149/589 (25%), Positives = 259/589 (43%), Gaps = 94/589 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL++G + R + DGD++L NR P
Sbjct: 322 PEMHPGARYIIREHN----ERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL++L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP + G+ + G S L +G L L +
Sbjct: 490 RWTGKQMVSMVLPPALNLVRIDGKASLPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
+ + F AQ V+ WL G ++ + D + +
Sbjct: 550 GSNGVIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDVGTVEK------ 603
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASV 700
++ D + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 ----IKSEVDKKK-------AEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGARD 652
Query: 701 DAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLS 756
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 653 EA---------GSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFG 703
Query: 757 FRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 704 FKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREGL 749
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
WO-1]
Length = 1448
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 160/602 (26%), Positives = 269/602 (44%), Gaps = 86/602 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + ++ + G
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ R++ L++GD++ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLL-MEDSV--------LLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QD +T ++L+ +DS LLS + +Q P P IFK
Sbjct: 545 PIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIP----PPTIFKPV--M 598
Query: 541 VWSGKQLFSMLLPPDFE-----------YTF--PSKD-----------VYISGGKLISA- 575
+W+GKQ+FS+L+ P+ + TF P K V I G K++S
Sbjct: 599 LWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSKILSGL 658
Query: 576 -EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHS 633
+ S+ + ++F +++ Y + LC +L RG ++ ++D+ A
Sbjct: 659 MDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
+K LM E Y L D ++ K T+ E + E +
Sbjct: 719 KQKKELMVEQAY-------------LKCDQLIDLYNRGK--LETQPGCNEEQTLEAKIGG 763
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS+ + ++ +L N+ L M GSKG+ L + Q +G Q
Sbjct: 764 LLSKVREEVGDVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---I 812
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + T +K + V NSF +GL P E H+++ R+
Sbjct: 813 ISGHRVPDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLTPPEFLFHAISGREGL 867
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G ++RRLM + DL + YD TVRN+ N IVQF+Y +G E +
Sbjct: 868 VDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAK 926
Query: 872 PV 873
PV
Sbjct: 927 PV 928
Score = 45.8 bits (107), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSE---VTNPRLGLPNPTNECSSCG 62
C +GLE + I + + L +E G V + + ++G+ + ECS+C
Sbjct: 12 CIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCH 71
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
+ +C GHFG I+ + H + I +L IC C + + Q
Sbjct: 72 G-NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQ 118
>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1448
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 161/602 (26%), Positives = 269/602 (44%), Gaps = 86/602 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + ++ + G
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPDIHPG 425
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ R++ L++GDI+ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDIVERHIEDGDVVLFNRQPSLHRLSILSHY 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLL-MEDSV--------LLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QD +T ++L+ +DS LLS + +Q P P IFK
Sbjct: 545 PIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIP----PPTIFKPV--M 598
Query: 541 VWSGKQLFSMLLPPDFE-----------YTF--PSKD-----------VYISGGKLISA- 575
+W+GKQ+FS+L+ P+ + TF P K V I G K++S
Sbjct: 599 LWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSKILSGL 658
Query: 576 -EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHS 633
+ S+ + ++F +++ Y + LC +L RG ++ ++D+ A
Sbjct: 659 MDKSTLGDGKKHSVFYTILRDYGPEEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
+K LM E Y L D ++ K T+ E + E +
Sbjct: 719 KQKKELMVEQAY-------------LKCDQLIDLYNRGK--LETQPGCNEEQTLEAKIGG 763
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS+ + ++ +L N+ L M GSKG+ L + Q +G Q
Sbjct: 764 LLSKVREEVGDVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---I 812
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + T +K + V NSF +GL P E H+++ R+
Sbjct: 813 ISGHRVPDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLTPPEFLFHAISGREGL 867
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G ++RRLM + DL + YD TVRN+ N IVQF+Y +G E +
Sbjct: 868 VDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAK 926
Query: 872 PV 873
PV
Sbjct: 927 PV 928
Score = 45.8 bits (107), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSE---VTNPRLGLPNPTNECSSCG 62
C +GLE + I + + L +E G V + + ++G+ + ECS+C
Sbjct: 12 CIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCH 71
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
+ +C GHFG I+ + H + I +L IC C + + Q
Sbjct: 72 G-NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKNCAAVLLDEQ 118
>gi|452844664|gb|EME46598.1| hypothetical protein DOTSEDRAFT_70566 [Dothistroma septosporum
NZE10]
Length = 1491
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 161/625 (25%), Positives = 266/625 (42%), Gaps = 117/625 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLLEKG 377
GKR D R V++ DPN+ + E+ +P +VA + ER+ N+E+L CI + G
Sbjct: 374 GKRVDFSGRTVISPDPNLAIDEVAVPQRVAVNMTYPERVTKHNFEKLKACIRRGDKVHPG 433
Query: 378 ELYVCR--------------KGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
Y+ + KG L ++ D LE+GD + R L DGDIVL NR PS+H
Sbjct: 434 ANYIVKGRDKRRIVLRMVGLKGDLHKV--ADQLEIGDTVERHLEDGDIVLFNRQPSLHKL 491
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S+++ K+ P + +N C+P++ DFDGD ++ ++PQ AR E TEL+ + L
Sbjct: 492 SILSHRAKIRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKHNLA 550
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC---------------PHRF 528
++G +++ QD +T A+L+ + + S Q + F P
Sbjct: 551 TPKNGTPIIAAIQDFITGAYLISQKDLFFSRRQFTHVVSFMYNALEVTDPYTGKKYPIEI 610
Query: 529 LSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF-------------PSK----------DV 565
P I+K ++W+GKQ++++L+ P +Y PS+ D
Sbjct: 611 PPPAIWK--PQTLWTGKQIWNLLMKPHRDYPVNVNLEAKLKQFAPPSRPGDADDMVDSDS 668
Query: 566 YI---SGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE----WLSVR 618
Y+ + + A + + D + Y+I RD D+ AA L + WL R
Sbjct: 669 YLVIRNSETMCGAFDKATIGDGKKTSVFYVI--MRDFGPDYAAAAMTRLAKLSARWLGER 726
Query: 619 GMTVSLSDLYLASHSCSRKI-LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST 677
G ++ +SD+Y + +RK L+D + E D +L +
Sbjct: 727 GFSIGISDVYPSDKLNARKQELIDTAYKACDEVIDKFKKGKLERSPGCD----------- 775
Query: 678 RSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLL 737
E + E S LS+ F ++ SK N+ + M K GSKG+ +
Sbjct: 776 -----EEQTMEITLSGILSKVRAQCADACFAEL--------SKFNAPMTMAKCGSKGSNI 822
Query: 738 KLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG--DNT-----ECAKSYIPSAVVE 790
+ Q +G Q R+ G D T + ++ + V
Sbjct: 823 NVSQMVASVGQQ---------------IIGGQRVLEGFQDRTLPHFPKASRDPLAKGFVA 867
Query: 791 NSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYG 848
+SF +GL P E H+++ R+ G ++RRLM + DL YD TVRN+
Sbjct: 868 DSFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDLTVRNS-S 926
Query: 849 NQIVQFSYNIEGTSTPTGEIGDQPV 873
+ +VQ + +G E +PV
Sbjct: 927 SGVVQMKFGDDGLDPVDMEGSAKPV 951
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC-KT 104
+PRLG + CS+C + K C GHFG +K H +L I + LN +C C K
Sbjct: 66 DPRLGTSSKNGTCSTC-QQGLKECNGHFGHVKLALPCFHYGYLKRIIEALNCVCKDCSKV 124
Query: 105 IRKERQK 111
+ E++K
Sbjct: 125 LLPEKEK 131
Score = 44.3 bits (103), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 1067 LLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSG----QCHITSLWSALM 1122
L VVKG+ E + I+ KD +K D G+ + V + G C T +
Sbjct: 1268 LPSVVVKGYPEAARA-IIKKDDKK------DETGKEPISVLVEGYGLKACMTTEGVNGYK 1320
Query: 1123 NDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVA 1182
+ +M+M D GI+A + + + S + G +I P H+ ++A
Sbjct: 1321 TKSNNVMEMRD--------------VLGIEAARKTIIDEISSVMG--GMDIDPRHMQLLA 1364
Query: 1183 NTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDA 1242
+ ++ GE +G+ GLA R S + +F P F AAK D+++G +
Sbjct: 1365 DVMTYKGEVLGITRFGLAKMRD----SVLQLASFEKTPDHLFEAAAKMKK-DDIEGVSEC 1419
Query: 1243 LGWGKVPSVGTGG 1255
+ G+ VGTG
Sbjct: 1420 IIMGQSMGVGTGA 1432
>gi|321473720|gb|EFX84687.1| hypothetical protein DAPPUDRAFT_222950 [Daphnia pulex]
Length = 1387
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 181/696 (26%), Positives = 308/696 (44%), Gaps = 101/696 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LEKG 377
GKR D R V++ DPN+++ ++G+P VA+ L R+N N + + + + G
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDQVGVPELVAKILTFPTRVNEANIDLMRQLVRNGADVHPG 417
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ KG + R L+LGD+I R + D DIVL NR PS+H S++
Sbjct: 418 ANYLQEKGSELKKFLKYGNRESLARNLKLGDLIERHMMDEDIVLFNRQPSLHKLSIMCHR 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+LP N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 478 AKILP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEAWILMGNKFNLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLL-MEDS---------VLLSHLQMQQLQMFCPHRFLSPDIFKISKD 539
L++ QD +T A+LL ++D+ ++ S L ++ M + P I K +
Sbjct: 537 LLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVI--KLPPPCIQKPA-- 592
Query: 540 SVWSGKQLFSMLLPPD-------------FEYTFPSKDVYISGGKLI---------SAEG 577
++WSGKQ+FS++L P+ EY+ +++ ++ G L+ +
Sbjct: 593 ALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSKKNEEFCVNDGFLLVRNSEVLAGCVDK 652
Query: 578 SSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE----WLSVRGMTVSLSDLYLASHS 633
S+ + N+F L++ Y + DF A LC ++ RG ++ + D+
Sbjct: 653 STIGSGSKINIFYVLLRDYGE---DFAIQAMWKLCRVASYYMMNRGFSIGIGDV------ 703
Query: 634 CSRKILMDEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
K L+ E L C+ + +L+ + L + ES S + LS + ++
Sbjct: 704 TPGKTLLKEKQTLLDTGYSKCDEYIRLLTLGQLPCLPGCNEEESLESKILKELSGIRDQA 763
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSL 752
+ + + NS L M K+GSKG+ + + Q C+G Q
Sbjct: 764 GEVCKKELHP------------------SNSPLVMSKSGSKGSYINISQMIACVGQQ--- 802
Query: 753 APLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
A R P+ + + AK + V NSF +GL P E F H++ R+
Sbjct: 803 ALNGKRVPNGFEDRSLPHFKRHSKIPAAKGF-----VSNSFYSGLTPTEFFFHTMGGREG 857
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + DLC YD TVRN+ G +I+QF Y +G E D
Sbjct: 858 LVDTAVKTAETGYMQRRLVKSLEDLCCQYDSTVRNSTG-EIIQFVYGGDGLDPTYMEAKD 916
Query: 871 QPVGSLSACAISEAAYSALD-QPISLLETSPLLNLKNVLECGSKKS---NADQTMSLFLS 926
+PV A +AA D +P+ +E N +++ S K + + +F+
Sbjct: 917 RPVDFQRALDHIKAASPYPDEEPLDDIELQQAFN--TIMDTDSFKMLGVDFQHELRVFVE 974
Query: 927 N---KLGKRRHGFEYGA---LEVKNHLECLMLSDIV 956
+ ++ K R F+ L V+ HLE + + +V
Sbjct: 975 SQVKRIKKVRQLFKMEGRSLLRVEKHLERITVGQLV 1010
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC----- 102
R+G+ C++CG K C GHFG+I + H + + +L +IC C
Sbjct: 59 RMGMSVKDAICATCG-KGLTECVGHFGYIDLELPVFHVGYFKAVITILQTICKSCSHVML 117
Query: 103 ----KTIRKERQKGA-------GSSRKEQPRVCKYCVRNP 131
+ I + + KG + RK+ CK R P
Sbjct: 118 NEKMRKIYRAKLKGPKIPYLNKKALRKQIQEACKKVTRCP 157
Score = 42.0 bits (97), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 85/220 (38%), Gaps = 26/220 (11%)
Query: 1042 TVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGE 1101
T++IV+ + + + + L + V+KG + + I D +K +
Sbjct: 1169 TIVIVKPAPSSKSSMYHVMQHLKETLPRVVIKGLPTVSRAVINIDDTRKPPR-------- 1220
Query: 1102 LYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTN 1161
YL V + + + + T + +NI GI+A
Sbjct: 1221 YYLLVEGDNMREVMATYG------------VKGTSTTSNNILEVYTTLGIEAAKATIAKE 1268
Query: 1162 LESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPG 1221
++ + G ++ H+ ++++ +S GE +G+ GLA ++ S + A F
Sbjct: 1269 IQYTMESHGMSVDRRHVALLSDLMSCRGEILGITRHGLAKMKE-----SVLMLASFERTS 1323
Query: 1222 ASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIY 1261
A+ G D + G + + G S+GTG F ++Y
Sbjct: 1324 DHLFDASYYGQEDEITGVSECIIMGIPMSIGTGA-FKLLY 1362
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 1311
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 261/582 (44%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 18 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 77
Query: 373 LLE-KGELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 78 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 133
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 134 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPMQ 192
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L L + Q+ + + P P I K
Sbjct: 193 IVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIEFDQVLNMLYWVPDWDGVIPQPAILK--P 250
Query: 539 DSVWSGKQLFSMLLPPDFEY--------TFPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQ+ S+ +P KD + I G + + G
Sbjct: 251 KPLWTGKQILSIAIPKGIHLQRFDEGTTMLSPKDNGMLVIDGQIVFGVVDKKTVGSSSGG 310
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V ++ Q+V+ WL G + + D + M EI
Sbjct: 311 LIHVVTREKGPQVCAKMFGNIQKVVNFWLLHNGFSTGIGDTIADGET------MKEITET 364
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ +++ ++ N L++AK + R S+E L++A A +
Sbjct: 365 IAEAKKKV--EEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGR-- 413
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
LA + N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 414 ------LAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 467
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 468 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 513
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YD T RN+ GN ++QF Y +G
Sbjct: 514 AETGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDG 554
>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
Length = 1460
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 158/598 (26%), Positives = 260/598 (43%), Gaps = 77/598 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ + E+ +P +VA+ L E++ +N ++L + I+ + G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIINGPNVHPG 429
Query: 378 ELYVCRKGGLVR--------IRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ + R ++ L+ GD++ R L DGD+VL NR PS+H S+++
Sbjct: 430 ANYLLKNNEDARRNLRYGDRVKLAKNLQFGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 490 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 548
Query: 490 NLLSLGQDSLTAAHLLM-EDSVLLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQ 546
+++ QD +T ++L+ +DS Q L M C +F P + +W+GKQ
Sbjct: 549 PIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMCDANLQFDIPPPAIMKPHYLWTGKQ 608
Query: 547 LFSMLLPPDFE-------------YTFPSKDVY------------ISGGKLISA-EGSSW 580
LFS+L+ P+ + Y P Y I G +++S S
Sbjct: 609 LFSLLIKPNKDSPVVINLDAKNKVYIPPKTKAYPNEMSRNDGYVIIRGSQILSGVMDKSV 668
Query: 581 LRD-YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKI 638
L D + ++F +++ Y + LC +L RG ++ +SD+ A +K
Sbjct: 669 LGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGISDVTPADDLKQKKE 728
Query: 639 LMDEIFYG-LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ EI Y E D N +L N E + E + LS+
Sbjct: 729 ELVEIAYAKCDELIDQFNKGKLETQPGCN----------------EEQTLEAKIGGLLSK 772
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
+ ++ NL N+ L M GSKG+ L + Q +G Q
Sbjct: 773 VREEVGDVCINELDNL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---IISGN 821
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R P + + T +K + V NSF +GL P E H+++ R+
Sbjct: 822 RVPDGFQDRSLPHFQKNSKTPQSKGF-----VRNSFFSGLTPPEFLFHAISGREGLVDTA 876
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G ++RRLM + DL YD TVR + N IVQF+Y +G E +PV
Sbjct: 877 VKTAETGYMSRRLMKSLEDLSCQYDNTVRTS-SNGIVQFTYGGDGLDPMEMEGNAKPV 933
Score = 43.5 bits (101), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G+ + + EC +C + +C GHFG IK + H + ++L IC C I
Sbjct: 57 RMGVSSSSLECETCHG-NLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKTCSAI 113
>gi|397135836|gb|AFO11413.1| RNA polymerase I, partial [Torulaspora delbrueckii]
Length = 871
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 166/633 (26%), Positives = 284/633 (44%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTFLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ S+ +P KD + I G + + G L
Sbjct: 384 LWTGKQILSIAIPKGIHLQRFDEGTTLLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + ++ L+ Q+V+ W G + + D + M EI +
Sbjct: 444 HVVTREKGPQICARLFGNIQKVVNYWFLHNGFSTGIGDTIADGQT------MREITETIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A+ + + ++ N L++AK + R S+E L++A A +
Sbjct: 498 DAKKKV--EDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 549 NLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 600 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q + ++
Sbjct: 647 TGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDGMD--ASHIEKQAIDTIGG-- 701
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S++A+ + I LL LL+ ++LE GS+
Sbjct: 702 -SDSAFEKRYR-IDLLNPDHLLD-PSLLESGSE 731
>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1403
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 176/682 (25%), Positives = 296/682 (43%), Gaps = 95/682 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LEKG 377
GKR D R V++ DPN+++ E+ +P +VA+ L ER+ N +RL + + G
Sbjct: 351 GKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTGHNIDRLKKAVRNGCDVHPG 410
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV R D L +GDI+ R + DGDI L NR PS+H S++
Sbjct: 411 ANYVTAGSNGFKKYLKFGNRTAIADGLRIGDIVERHVIDGDIALFNRQPSLHKLSIMCHR 470
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
+KV P S +N C P++ DFDGD ++ ++PQ AR E EL+++ L+ ++G
Sbjct: 471 IKVRPWRSF-RLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGE 529
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKISKDSVWSG 544
+++ QD +TA+ LL Q Q+ + L P I+K + +W+G
Sbjct: 530 PVIAAIQDFITASFLLSRRDTFFDRRQFTQICSYFADADLQIDIPPPAIWKPVR--LWTG 587
Query: 545 KQLFSMLLPPD-----------------------FEYTFPSKDVYISGGKL--ISAEGSS 579
KQ+F++L+ P+ + P+ D+ + G L +++E
Sbjct: 588 KQVFNVLMRPNRQSKVFVNVESKCNKEDKPQAACYPRMRPAPDLSPNDGWLVIVNSEIMC 647
Query: 580 WLRD-------YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLAS 631
+ D + ++F +++ Y LC +L+ G ++ ++D+
Sbjct: 648 GVMDKATVGSGKKKSVFGVIMRDYGPHEAAAAMNRVAKLCARYLANIGFSLGINDVIPGP 707
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQR 691
+K M E Y C ++L++ + L + + ++L+ E
Sbjct: 708 VLSGKKDSMVEDAYA------AC--ERLIIRAKKGLLENKPGCDQEQTLEAE-------- 751
Query: 692 SAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
+S+ D V ++ + K S+ N+ L M GSKG+++ + Q C+G Q
Sbjct: 752 ---ISKVLSD----VRGNVGEICMKELSRHNAPLIMATCGSKGSVINVSQMVACVG-QQI 803
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
+A R P + +K + V NSF TGL P E H+++ R+
Sbjct: 804 IA--GHRVPDGFQDRSLPHFPKKSRDPPSKGF-----VRNSFYTGLTPTEFLFHAISGRE 856
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRLM + DL T YD +VRNA G +VQF Y +G E
Sbjct: 857 GLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGG-VVQFRYGDDGLDPACLEGD 915
Query: 870 DQPV----GSLSACAISEAAYSALDQPISLLE--TSPLLNLKNVLECGSKK-SNADQTMS 922
QPV AC+++ A L P ++E L K EC + + +S
Sbjct: 916 AQPVDYERAWRHACSLASRAPRGL-LPYEIIEFVDHELSTRKYTTECTAAYLATIRSFIS 974
Query: 923 LFLSNKLG--KRRHGFEYGALE 942
++ +LG ++RHG + ALE
Sbjct: 975 ENIAQRLGEVRKRHGM-FEALE 995
>gi|351518437|gb|AEQ39959.1| RNA polymerase II largest subunit [Lecophagus sp. ATCC 56071]
Length = 1000
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/572 (25%), Positives = 261/572 (45%), Gaps = 70/572 (12%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL----------- 365
++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL
Sbjct: 271 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHRLHQLVRNGPNDH 330
Query: 366 --SVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
+ C+ E+ +L ++ G + +L+ G + R + DGD ++ NR PS+H
Sbjct: 331 PGAKCVIRDTGERIDLRHHKRAGEI------SLQYGWKVERHIIDGDFIIFNRQPSLHKE 384
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++ ++VLP S+ ++ SP++ DFDGD ++ ++PQ+ R E+++L + Q++
Sbjct: 385 SMMGHRIRVLPYSTF-RLHLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLQIV 443
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVW 542
+ Q L+ + QD+L + + V L + + ++ P + P I + W
Sbjct: 444 SPQRNGPLMGIVQDTLCGVYKMTRRDVFLDRNAVMNILLWVPGWDGVIPPPAIIKPRARW 503
Query: 543 SGKQLFSMLLPPDFEYTFPS-------KDVYISGGKLISAEGSSWLRDY-EGNLFQYLIK 594
+GKQ+ S+++PP+ S +++S G+L+ S + +G L +
Sbjct: 504 TGKQVISLIIPPNINLVKTSDMPPLTDDGLWVSNGELLFGLLSKKVVGASQGGLIHIIYN 563
Query: 595 RYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
K + F Q V WL G ++ + D + + R Q+
Sbjct: 564 EKGSKTCMGFFNGCQLVTNYWLLHNGFSIGIGDTIPDAKTVKR-------------IQEI 610
Query: 654 CNFQQLMVDSHMNFLMSAKDSEST-RSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDI 710
+ ++ V+ ++ K E+T +L G ++ ++E + S +L+ A +A +
Sbjct: 611 VDAKKAEVEE-----VTRKAQENTLEALPGMNIRETFENKVSKSLNGARDEAGSATEKSL 665
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
++L N+ + M ++GSKG+ + + Q S +G Q R P
Sbjct: 666 KDL--------NNAIQMARSGSKGSNINISQMSAVVGQQSVEGK---RIPFGFKYRTLPH 714
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D + ++ + VENS+L GL P E F H++ R+ G + RRL
Sbjct: 715 FTKDDYSAESRGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 769
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ + D+ YDGTVRN+ G+ IV F Y +G
Sbjct: 770 VKALEDVMAKYDGTVRNSLGD-IVTFCYGEDG 800
>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
Y34]
gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae
P131]
Length = 1745
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 148/578 (25%), Positives = 252/578 (43%), Gaps = 82/578 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR D R V+TGD NI L E+G+P +A L E + N +RL ++
Sbjct: 342 LMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEH 401
Query: 376 KGELYVCRKGGL------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G Y+ R G V+ R LE G + R L GD ++ NR PS+H S++
Sbjct: 402 PGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQ 461
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 462 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNS 520
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLF 548
L+ + QD+L + L V L+ + + ++ P + P + W+GKQ+
Sbjct: 521 PLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQII 580
Query: 549 SMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR------------- 595
SM++ PDF T GG + L +F L K+
Sbjct: 581 SMVI-PDFVTTH-------QGGDWNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHIC 632
Query: 596 YRD----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
Y + + + FL Q V+ WL G ++ + D + + +++I + E +
Sbjct: 633 YNEQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGD------TIPDPVTIEKIQAHINEQK 686
Query: 652 -DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+ L + + L E+ S + L+ ++++ ++ S+ DI
Sbjct: 687 AEVAELTDLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLK-------DI 739
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 740 -----------NNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH--- 785
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 786 ------FTKDDFSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETG 834
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 835 YIQRRLVKALEDVAAKYDGTVRNSLGD-IIQFIYGEDG 871
>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
Length = 1448
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 160/602 (26%), Positives = 269/602 (44%), Gaps = 86/602 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + ++ + G
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ R++ L++GD++ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLL-MEDSV--------LLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QD +T ++L+ +DS LLS + +Q P P IFK
Sbjct: 545 PIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIP----PPTIFKPV--M 598
Query: 541 VWSGKQLFSMLLPPDFE-----------YTF--PSKD-----------VYISGGKLISA- 575
+W+GKQ+FS+L+ P+ + TF P K V I G K++S
Sbjct: 599 LWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSKILSGL 658
Query: 576 -EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHS 633
+ S+ + ++F +++ Y + LC +L RG ++ ++D+ A
Sbjct: 659 MDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
+K LM E Y L D ++ K T+ E + E +
Sbjct: 719 KQKKELMVEQAY-------------LKCDQLIDLYNRGK--LETQPGCNEEQTLEAKIGG 763
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS+ + ++ +L N+ L M GSKG+ L + Q +G Q
Sbjct: 764 LLSKVREEVGDVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---I 812
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + T +K + V NSF +GL P E H+++ R+
Sbjct: 813 ISGHRVPDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLTPPEFLFHAISGREGL 867
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G ++RRLM + DL + YD TVRN+ N IVQF+Y +G E +
Sbjct: 868 VDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAK 926
Query: 872 PV 873
PV
Sbjct: 927 PV 928
Score = 45.8 bits (107), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSE---VTNPRLGLPNPTNECSSCG 62
C +GLE + I + + L +E G V + + ++G+ + ECS+C
Sbjct: 12 CIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCH 71
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
+ +C GHFG I+ + H + I +L IC C + + Q
Sbjct: 72 G-NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQ 118
>gi|157741508|gb|ABV69459.1| RNA polymerase II largest subunit, partial [Placidiopsis
cartilaginea]
Length = 989
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 159/627 (25%), Positives = 268/627 (42%), Gaps = 98/627 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNKDRLKQFVTNG 321
Query: 373 L-LEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G RID L G + R + DGDI+L NR P
Sbjct: 322 PDIHPGARYIIREQG----ERIDLRFHKDPKSITLLTGWKVERHIMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWIPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVTDGLLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 548 GTGANGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEK---- 603
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 -------------IKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G E
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLDGAHIESQ 806
Query: 870 DQPVGSLSACAISEAAYSALDQPISLL 896
+ ++S A + L +P L+
Sbjct: 807 RVDIIAMSDIAFEQQFRVDLMEPTKLV 833
>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
Length = 1757
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 148/578 (25%), Positives = 252/578 (43%), Gaps = 82/578 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR D R V+TGD NI L E+G+P +A L E + N +RL ++
Sbjct: 354 LMGKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEH 413
Query: 376 KGELYVCRKGGL------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
G Y+ R G V+ R LE G + R L GD ++ NR PS+H S++
Sbjct: 414 PGAKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQ 473
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++ Q
Sbjct: 474 VRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNS 532
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLF 548
L+ + QD+L + L V L+ + + ++ P + P + W+GKQ+
Sbjct: 533 PLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQII 592
Query: 549 SMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR------------- 595
SM++ PDF T GG + L +F L K+
Sbjct: 593 SMVI-PDFVTTH-------QGGDWNPLNDDALLIQSGELMFGLLTKKNVGAASGGIIHIC 644
Query: 596 YRD----KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
Y + + + FL Q V+ WL G ++ + D + + +++I + E +
Sbjct: 645 YNEQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGD------TIPDPVTIEKIQAHINEQK 698
Query: 652 -DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+ L + + L E+ S + L+ ++++ ++ S+ DI
Sbjct: 699 AEVAELTDLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLK-------DI 751
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
N+ + M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 752 -----------NNAVTMSRSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH--- 797
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 798 ------FTKDDFSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETG 846
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 847 YIQRRLVKALEDVAAKYDGTVRNSLGD-IIQFIYGEDG 883
Score = 45.1 bits (105), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C D C GHFG I+ + HP F++ K+L +C +C
Sbjct: 55 LNDPLLGTTDRQYKCKTCN-NDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCS 113
Query: 104 TI 105
+
Sbjct: 114 KL 115
>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
Length = 1443
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 158/596 (26%), Positives = 269/596 (45%), Gaps = 74/596 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + I+ + G
Sbjct: 369 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQCLIINGPDVHPG 428
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ R++ +L++GD++ R + DGD+VL NR PS+H S++A
Sbjct: 429 ANYVMKQNEAGKRNLRFGDRVKLAKSLQIGDVVERHIEDGDVVLFNRQPSLHRLSILAHY 488
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 489 AKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 547
Query: 490 NLLSLGQDSLTAAHLLM-EDSVLLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQ 546
+++ QD +T ++L+ +DS +Q L M +F P + +W+GKQ
Sbjct: 548 PIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADIQFDIPPPAIMKPVMLWTGKQ 607
Query: 547 LFSMLLPPDFE-----------YTF--PSKD-----------VYISGGKLISA--EGSSW 580
+FS+L+ P+ + TF P+K V I G +++S + S+
Sbjct: 608 VFSLLIKPNRQSKVVINLNAKNKTFHPPAKGLPSEMSPNDGFVLIRGSQILSGLMDKSTL 667
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ ++F +++ Y + LC +L RG ++ ++D+ A +K L
Sbjct: 668 GDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPAHELKQKKEL 727
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
M E Y L D ++ K T+ E + E + LS+
Sbjct: 728 MVEQAY-------------LKCDQLIDLYNRGK--LETQPGCNEEQTLEAKIGGLLSKVR 772
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
+ ++ +L N+ L M GSKG+ L + Q +G Q R
Sbjct: 773 EEVGDVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---IISGHRV 821
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P + T +K + V NSF +GL+P E H+++ R+
Sbjct: 822 PDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLSPPEFLFHAISGREGLVDTAVK 876
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G ++RRLM + DL + YD TVRN+ N IVQF+Y +G E +PV
Sbjct: 877 TAETGYMSRRLMKSLEDLSSQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAKPV 931
Score = 45.8 bits (107), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSE---VTNPRLGLPNPTNECSSCG 62
C +GL+ + I + + L +E G V + + R+G+ + ++EC++C
Sbjct: 13 CIDGLDFSALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEGGALDTRMGISSNSSECATCH 72
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
+ +C GHFG I+ + H + + +L +C C I E Q
Sbjct: 73 G-NLASCNGHFGHIRLALPVFHVGYFKAVISVLQCVCKNCGAILLEPQ 119
Score = 40.4 bits (93), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
T++ +++ GI+A + ++ +S+ G ++ P H+ ++ + ++ GE +G+
Sbjct: 1297 TKTTTNHVLEVNEILGIEAARGSIIREIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1356
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GL+ R S A F AA D ++G + + GK SVGTG
Sbjct: 1357 TRFGLSKMR-----DSVLQLASFEKTTDHLFDAAFFMKKDKIEGVSECIILGKTMSVGTG 1411
Query: 1255 GHFDIIYS 1262
F ++ S
Sbjct: 1412 A-FKLVKS 1418
>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
Length = 1448
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 160/602 (26%), Positives = 269/602 (44%), Gaps = 86/602 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + ++ + G
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ R++ L++GD++ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYVMKQNEPGKRNLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLL-MEDSV--------LLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QD +T ++L+ +DS LLS + +Q P P IFK
Sbjct: 545 PIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIP----PPTIFKPV--M 598
Query: 541 VWSGKQLFSMLLPPDFE-----------YTF--PSKD-----------VYISGGKLISA- 575
+W+GKQ+FS+L+ P+ + TF P K V I G K++S
Sbjct: 599 LWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPKKGLPNEMSPNDGFVVIRGSKILSGL 658
Query: 576 -EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHS 633
+ S+ + ++F +++ Y + LC +L RG ++ ++D+ A
Sbjct: 659 MDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
+K LM E Y L D ++ K T+ E + E +
Sbjct: 719 KQKKELMVEQAY-------------LKCDQLIDLYNRGK--LETQPGCNEEQTLEAKIGG 763
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS+ + ++ +L N+ L M GSKG+ L + Q +G Q
Sbjct: 764 LLSKVREEVGDVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---I 812
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + T +K + V NSF +GL P E H+++ R+
Sbjct: 813 ISGHRVPDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLTPPEFLFHAISGREGL 867
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G ++RRLM + DL + YD TVRN+ N IVQF+Y +G E +
Sbjct: 868 VDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAK 926
Query: 872 PV 873
PV
Sbjct: 927 PV 928
Score = 45.8 bits (107), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSE---VTNPRLGLPNPTNECSSCG 62
C +GLE + I + + L +E G V + + ++G+ + ECS+C
Sbjct: 12 CIKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCH 71
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
+ +C GHFG I+ + H + I +L IC C + + Q
Sbjct: 72 G-NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQ 118
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 167/633 (26%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTFLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWTGKQILSIAIPKGIHLQRFDEGTTLLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + ++ L+ Q+V+ W G + + D + M EI +
Sbjct: 631 HVVTREKGPQICARLFGNIQKVVNYWFLHNGFSTGIGDTIADGQT------MREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A+ + + ++ N L++AK + R S+E L++A A +
Sbjct: 685 DAKKKV--EDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q + ++
Sbjct: 834 TGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDGMD--ASHIEKQAIDTIGG-- 888
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S++A+ + I LL LL+ ++LE GS+
Sbjct: 889 -SDSAFEKRYR-IDLLNPDHLLD-PSLLESGSE 918
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/594 (26%), Positives = 259/594 (43%), Gaps = 107/594 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVLRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVST 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ + + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGIVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRD-----YEGNLFQYLIKRYR 597
+GKQL SM++P + P SGG+ L+D G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPES----SGGQ---DNADIPLKDTGLLIQSGELLYGLLKKKN 637
Query: 598 ------------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + FL Q+V+ WL G ++ + D + K
Sbjct: 638 IGSAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQT 691
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAA 694
++++ Q+ +D+ + L + + +L G ++ ++E + S A
Sbjct: 692 IEKV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMA 737
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HS 751
L+ A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 738 LNSARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGK 789
Query: 752 LAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
P F++ PH D + A+ + VENS+L GL P E F H++
Sbjct: 790 RIPFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMA 835
Query: 809 SRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 836 GREGLIDTAVKTAETGYIQRRLVKALEDLSERYDGTVRNSLGD-IIQFLYGEDG 888
Score = 41.2 bits (95), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
Score = 40.4 bits (93), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/205 (18%), Positives = 91/205 (44%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + + D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV-----IDDDGAEIAKKDDDKCTQWYLDTSGSALREV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA G +D
Sbjct: 1389 HRHIALLVDVMTYRGSISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAATGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
>gi|327242127|gb|AEA40842.1| RNA polymerase II largest subunit [Trichomonas tenax]
Length = 1016
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 156/582 (26%), Positives = 263/582 (45%), Gaps = 86/582 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR+D R V++ DP+I + ++G+P +A+ L E + + N + L S+ + G
Sbjct: 275 GKRDDFSARSVISPDPSISIDQVGVPEDLAKILTFPEIVTTTNQKWLESIVMKGHDDIGG 334
Query: 378 ELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVK 431
YV G AL G ++ R + D DIV+ NR PS+H S++
Sbjct: 335 ANYVTNDHGTKTDLAFCNDLSTIALSPGYVVDRHIRDNDIVIFNRQPSLHKMSMMGHRAL 394
Query: 432 VLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNL 491
++P + +N +P++ DFDGD ++ ++PQ+ AR E+ ++A+ KQ+I+ Q+ R +
Sbjct: 395 LMP-ARTFRLNLCDTTPYNADFDGDEMNLHVPQSQTARAEVRHIMAVPKQIISPQANRPV 453
Query: 492 LSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHR----FLSPDIFKISKDSVWSGKQL 547
+ L QD+L LL + L+ Q+ L M+ P P I K + +WSGKQ+
Sbjct: 454 IGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPVQ--LWSGKQV 511
Query: 548 FSMLLPPDFEYT-------------FPSKD--VYISGGKLISA--EGSSWLRDYEGNLFQ 590
FS+ L P Y P D V I G L++ + S R EG+L
Sbjct: 512 FSLFL-PKISYDSYSNGATDKDKNWIPKNDSRVIIRDGNLLAGILDKRSCARS-EGSLTH 569
Query: 591 YLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+I Y + DFL Q ++ WL RG ++SL D + ++D++ G+ +
Sbjct: 570 VVINSYNTNIAKDFLNQTQLIVNNWLEYRGFSISLIDCVVP------HFVLDKVEEGIMQ 623
Query: 650 AQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL-SYEKQRSAALSQASVDAFKHVFW 708
++ + +A+ + R ++ S+E + ++ L++ A+K +
Sbjct: 624 VEENVR----------ETIRTAQSGKLDRRPGMTYIQSFEAEVNSQLNKVLSIAYKTITE 673
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
+I+ DNS + M AGSKG + Q + Q+
Sbjct: 674 NIR--------PDNSFVEMLTAGSKGADFNITQVIGVVAQQN---------------IEG 710
Query: 769 NRLRAGDNTECAKSY-------IPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA--- 818
R++ G N Y +P ++S++ GL P E H++ R + D A
Sbjct: 711 KRVKFGFNGRTLPHYQKHEYGLVPRGFCKHSYIEGLTPPEFLFHAMGGR-TGIIDTACKT 769
Query: 819 DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M AYDGTVRN+ N++VQF Y +G
Sbjct: 770 SDTGYIQRRLVKSMESHHVAYDGTVRNSL-NEVVQFIYGGDG 810
>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1460
Score = 172 bits (435), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 160/597 (26%), Positives = 261/597 (43%), Gaps = 75/597 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ + E+ +P +VA+ L E++ +N E+L ++ I+ + G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVINGPNVHPG 429
Query: 378 ELYVCRKGGLVR--------IRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ + R ++ L +GDI+ R L DGDIVL NR PS+H S+++
Sbjct: 430 ANYILKANEEARRNLRYGDRLKIAKQLRVGDIVERHLEDGDIVLFNRQPSLHRLSILSHF 489
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 490 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGE 548
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGKQ 546
+++ QD +T ++L+ L QL L DI I +W+GKQ
Sbjct: 549 PIIAATQDFITGSYLISHKDTFLDRATFTQLLSMMSDSNLQFDIPPPTIIKPYCLWTGKQ 608
Query: 547 LFSMLLPPDFEYT------------FPSKD-------------VYISGGKLISA-EGSSW 580
LFS+L+ P+ + P K V I G +++S S
Sbjct: 609 LFSLLIKPNKDSPVVINLDAKNKVFIPPKSKSLPNEMSQNDGFVVIRGSQILSGVMDKSV 668
Query: 581 LRD-YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKI 638
L D + ++F +++ Y + LC +L RG ++ +SD+ + +K
Sbjct: 669 LGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARYLGNRGFSIGISDVTPDNALKQKKE 728
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ EI Y C+ ++D + K T+ E + E + LS+
Sbjct: 729 ELVEIAYA------KCD---ELID------LFTKGKLETQPGCNEEQTLEAKIGGLLSKV 773
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
+ ++ NL N+ L M GSKG+ L + Q +G Q R
Sbjct: 774 REEVGDICINELDNL--------NAPLIMATCGSKGSNLNVSQMVAVVGQQ---IISGNR 822
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P + R T +K + V NSF +GL+P E H+++ R+
Sbjct: 823 VPDGFQDRSLPHFRKNSKTPQSKGF-----VRNSFFSGLSPPEFLFHAISGREGLVDTAV 877
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G ++RRLM + DL YD TVR + N IVQF+Y +G E QPV
Sbjct: 878 KTAETGYMSRRLMKSLEDLSCQYDNTVRTS-SNGIVQFTYGGDGLDPLEMEGNAQPV 933
Score = 47.4 bits (111), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P++G+ + + EC++C + +C GHFG IK + H + ++L IC C +I
Sbjct: 55 DPKMGVSSSSMECTTCHG-NLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKNCSSI 113
>gi|397135828|gb|AFO11409.1| RNA polymerase I, partial [Nakaseomyces delphensis]
Length = 871
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 281/633 (44%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +RLS +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLSQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRSGDVQLQYGWKVERHIMDEDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVVPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAH-LLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QS + + + QD+L L + DS L + L + P +
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKLTLRDSFLEFDEVLNMLYWVPDWDGVIPIPAVLKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ S+ +P KD + I G + + G L
Sbjct: 384 LWTGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGEIIFGTVDKKTVGSSSGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + V L+ Q+V+ WL G + + D + M EI +
Sbjct: 444 HVVTREKGPTVCARLFGNIQKVVNFWLLHNGFSTGIGDTVADGQT------MREISETIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A+ + + ++ N L++AK + R S+E L++A A +
Sbjct: 498 DAKKKV--EAVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGRLAEM 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q + F F PH
Sbjct: 549 NLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 600 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YDGT RN+ GN ++QF Y +G I Q SL
Sbjct: 647 TGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTMG 700
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+ A+ + I LL T+ L ++LE GS+
Sbjct: 701 GSDRAFERRYR-IDLLNTTNSLE-PSLLESGSE 731
>gi|157741558|gb|ABV69484.1| RNA polymerase II largest subunit, partial [Thelidium pyrenophorum]
Length = 999
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 154/591 (26%), Positives = 256/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++ I
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL++G + R + DGDI+L NR P
Sbjct: 322 PEHHPGARYIIRENN----ERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS + + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVADGQLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + KI
Sbjct: 548 GTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDFGTVEKI-- 604
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 605 --------------KFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDINNAIQMVRAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFVYGEDG 797
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 154/592 (26%), Positives = 259/592 (43%), Gaps = 103/592 (17%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 352 LMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEH 411
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L DGD ++ NR PS+H S+
Sbjct: 412 PGAKYVIRADGT----RIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESM 467
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ EL + +++
Sbjct: 468 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSP 526
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QDSL A+ + + + + ++ P+ P I K W
Sbjct: 527 QKNGPLMGIVQDSLAGAYKICRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILK--PRPRW 584
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAE---GSSWLRDYEGNLFQYLIKRYR-- 597
+GKQL SM++P + P S G +A+ + L G L L+K+
Sbjct: 585 TGKQLISMVIPKEISLHSPE-----SSGAQDNADIPLKDTGLLIQSGELLYGLLKKKNIG 639
Query: 598 ----------------DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
+ + FL Q+V+ WL G ++ + D + K ++
Sbjct: 640 SAAGGIVHLSYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGD------TVPDKQTIE 693
Query: 642 EIFYGLREAQDTCNFQQLMVDSH---MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALS 696
++ Q+ +D+ + L + + +L G ++ ++E + S AL+
Sbjct: 694 KV--------------QVHIDTQKAEVARLTAQATANELEALPGMNVRATFENKVSMALN 739
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLA 753
A A +++ N+ + M ++GSKG+ + + Q + +G Q
Sbjct: 740 SARDQAGTTTQRSLKD--------SNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRI 791
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + A+ + VENS+L GL P E F H++ R
Sbjct: 792 PFGFKYRTLPH---------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGR 837
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ + DL YDGTVRN+ G+ I+QF Y +G
Sbjct: 838 EGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD-IIQFLYGEDG 888
Score = 41.2 bits (95), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 1056 LETIQMWVMPFLLKT-VVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI 1114
L+T+ + +P + + + KG R + VD D + +K DD + YL S S +
Sbjct: 1286 LDTLTLRGVPGVERAFLTKGTRLV--VD---DDGSEIAKKDDDKCTQWYLDTSGSALREV 1340
Query: 1115 TSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNIL 1174
++ D +D TR++ +++ +GI+A + L + ++ G +
Sbjct: 1341 LAV------------DGVDPTRTYTNDLWQIVEVFGIEAARSALVKELTNVLAFDGSYVN 1388
Query: 1175 PEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVD 1234
H+ ++ + ++ G + G+ + + + ++ F ++AA +G +D
Sbjct: 1389 HRHIALLVDVMTYRGSISAVTRHGI-----NRADTGALMRCSFEETVEILLEAAASGELD 1443
Query: 1235 NLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +G + + G++ +GT G+FD+
Sbjct: 1444 DCRGISENVMLGQLAPMGT-GNFDV 1467
Score = 40.8 bits (94), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C C
Sbjct: 55 LNDPLLGSIDRGFKCKTC-TQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCS 113
Query: 104 TI 105
+
Sbjct: 114 KV 115
>gi|397135946|gb|AFO11468.1| RNA polymerase I, partial [Wickerhamiella domercqiae]
Length = 853
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/577 (26%), Positives = 261/577 (45%), Gaps = 77/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR + R V+TGDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 153 LMGKRVNFSARTVITGDPNLDLDQVGVPKSIARTLTYPEAVTPYNIHRLTQYVRNGPNEH 212
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 213 PGAKYIVRDTG----ERIDLRYHKRVGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 268
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++
Sbjct: 269 MAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSP 327
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + + + +Q + + P + P + +W+G
Sbjct: 328 QSNKPVMGIVQDTLAGIRKMTLRDTFIDYAAVQNILFWVPDWDGVVPPPAILKPKPLWTG 387
Query: 545 KQLFSMLLPPD-----FEYTFP---SKD----VYISGGKLISAEGSSWLRDYEGNLFQYL 592
KQ+ SM +P F+ P KD VY G + + G L +
Sbjct: 388 KQMASMAIPAGIFMQRFDDNNPLHSPKDNGMLVY-KGQVMYGVVNKKTVGSTAGGLIHTI 446
Query: 593 IKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+ V F + Q+++ WL G ++ + D + + + M + + +A+
Sbjct: 447 FREKGPYVCARFFSSIQKIVNFWLLHNGFSIGIGD------TIADRATMRNVTNTIADAK 500
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
Q++ D+ N L S + + R S+E L+ A + +Q
Sbjct: 501 QQV--QRITDDAQANTL-SPEPGMTLRE------SFEAAVILVLNNCRDTAGREAEMSLQ 551
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA-PLSFRF-----PHELSC 765
+ N++ M AGSKG+ + + Q S C+G Q ++F F PH +
Sbjct: 552 DT--------NNVKQMVSAGSKGSFINISQMSACVGQQIVEGRRIAFGFVDRTLPHFMR- 602
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + +K + VENS+L GL P E F H++ R+ G
Sbjct: 603 --------DDYSPESKGF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDG+ RN+ G+ ++QF+Y +G
Sbjct: 650 IQRRLVKALEDIMVQYDGSARNSLGD-VIQFTYGEDG 685
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/582 (26%), Positives = 259/582 (44%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L L + Q+ + + P +P + K
Sbjct: 511 IVSAQSNKPCMGIVQDTLCGIRKLTLRDTFIEFDQVLNMLYWVPDWDGVIPTPAVLK--P 568
Query: 539 DSVWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQ+ S +P KD + I G + + G
Sbjct: 569 KPLWTGKQVLSAAIPKGIHLQRFDEGTTLLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + + L+ Q+++ WL G + + D + + EI
Sbjct: 629 LIHVVTREKGPTICARLFGNIQKIVNFWLLHNGFSTGIGDTIADGQT------IKEITET 682
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ + + ++ N L++AK + R S+E L++A A +
Sbjct: 683 IAEAKKKV--EDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLA 733
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
++ +L N++ M AGSKG+ + + Q S C+G Q + F F P
Sbjct: 734 EVNLNDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLP 785
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 786 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGT RN+ GN ++QF Y +G
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-VIQFIYGEDG 872
Score = 42.4 bits (98), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG ++ +PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLN---DPRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ S+C C
Sbjct: 95 FIAKIKKVCESVCMHC 110
>gi|258564805|ref|XP_002583147.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus
reesii 1704]
gi|237906848|gb|EEP81249.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus
reesii 1704]
Length = 1435
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 156/604 (25%), Positives = 269/604 (44%), Gaps = 101/604 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L I + + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERIRNGTKVWPG 431
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G ++ D LE GD++ R L DGDIVL NR PS+H S+++
Sbjct: 432 ANYLSKRGTTFKVFLKYGNLRLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH------RFLSPDIFKISKDSVWS 543
+++ QD +TAA+LL + + ++C + +F P + +W+
Sbjct: 551 PIIAAIQDFITAAYLLSSKD---NFYDRKTFLLYCGYMLEPGTKFDLPPPAVLKPQMLWT 607
Query: 544 GKQLFSMLLPPD-------------FEYTFPS---KDVYISGGKLI--SAEGSSWLRD-- 583
GKQ+F++++ P E++ P +D+ G L ++E L D
Sbjct: 608 GKQVFNVMMRPSKDSPVLLNLDAACREFSAPKGTPRDLDADDGWLCIRNSEIMCGLMDKS 667
Query: 584 -----YEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ ++F +++ + +V + + + WL+ G ++ ++D+Y
Sbjct: 668 TIGSGKKDSVFYVMLRDFGPRVAAEAMNRLSRLSARWLTNMGFSIGITDVYPG------- 720
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
D + RE + Q D + + K ++ S E + E Q S L++
Sbjct: 721 ---DALLQAKREIVEEAYAQ---CDEVIQLFKTGKLEKAAGS--DEQQTMENQISGILNK 772
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
A + ++ SK NS L M ++GSKG+ + + Q +G Q
Sbjct: 773 VRQQAGEKCIAEL--------SKWNSPLIMAQSGSKGSTINVAQMIALVGQQ-------- 816
Query: 758 RFPHELSCAAWNRLRAG--DNT-----ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
R++ G D T + + + V NSF +GL P E F H+++ R
Sbjct: 817 -------IIGGQRVQNGFQDRTLPHFPKHTRQPLAKGFVRNSFFSGLTPSELFFHAISGR 869
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEG 860
+ G ++RRLM + DL YD TVRN+ N IVQF Y ++EG
Sbjct: 870 EGLIDTAVKTAETGYMSRRLMKSLEDLSCRYDDTVRNSSAN-IVQFQYGDDKLDPVDMEG 928
Query: 861 TSTP 864
+ P
Sbjct: 929 KAKP 932
Score = 46.2 bits (108), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I TR+ +NI GI+A + + + D I P H+ ++A+ ++ G
Sbjct: 1277 DGIWGTRTRTNNIMETKDVLGIEAARTTIVDEISEVMKDM--RIDPRHMQLLADVMTYKG 1334
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D ++G + + GK
Sbjct: 1335 EVLGITRFGLAKMR-----DSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIIMGKSV 1389
Query: 1250 SVGTGG 1255
S+GTG
Sbjct: 1390 SLGTGA 1395
Score = 42.0 bits (97), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G+ + + C +CG + C GHFG ++ H + + +L IC C I
Sbjct: 68 RMGISSKSGTCETCGGA-LQECNGHFGHVRLVLPAFHVGYFKRVISILQEICKDCSRI 124
>gi|397135862|gb|AFO11426.1| RNA polymerase I, partial [Dekkera bruxellensis]
Length = 793
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 147/568 (25%), Positives = 259/568 (45%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPNI+L ++G+P VA+ L E + +N +L+ + +
Sbjct: 97 LMGKRVDSSARSVISGDPNIELDQVGVPRTVAQTLTYPEVVTPYNIGQLTQLVRNGPNQY 156
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L DGD VL NR PS+H S+
Sbjct: 157 PGARYVIRDSG----ERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLFNRQPSLHKMSM 212
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ IN +P++ DFDGD ++ ++PQ+ + EL E+ A+ +Q+++
Sbjct: 213 MCHKVRVMPFSTF-RINLSVTTPYNADFDGDEMNMHVPQSYETKAELEEICAVPRQIVSP 271
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + +++ Q+ + + P + P + W+G
Sbjct: 272 QSNKPVMGIVQDTLVGVRKMTLRDSFVAYDQLMNMCFWNPGWDGVVPQPAVLKPRPXWTG 331
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+FS+ +P D P S + +G + + + G L ++
Sbjct: 332 KQVFSLTIPRGIFLQRVDGPPLSPRDSGMLIRNGDVMFGVVNKATVGTSSGGLIHTCMRE 391
Query: 596 YRDKVLDFLYAAQEVLCE-WLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ + + + +C WL G ++ + D + + M I + A+D
Sbjct: 392 KGPRECARMIGSIQKVCNYWLLHNGFSIGIGD------AIADPDTMKTITKTIATAKD-- 443
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q ++ D+ N L + + R S+E++ S L++A A K +++
Sbjct: 444 QVQGVIADAQANRL-QPEPGMTVRE------SFEQKVSKILNEARDAAGKSAETSLKD-- 494
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M AGSKG+ + + Q S C+G Q R + +
Sbjct: 495 ------SNNVKQMVTAGSKGSYINISQMSACVGQQIVEG---RRIYFGFADRSLPHFTKD 545
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 546 DYSAESKGF-----VENSYLRGLTPQELFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 600
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 601 EDIMVQYDGTTRNSLGD-VIQFLYGEDG 627
>gi|326479108|gb|EGE03118.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1427
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 162/607 (26%), Positives = 262/607 (43%), Gaps = 108/607 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L CI G
Sbjct: 371 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 430
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G R+ + L GDI+ R L DGDIVL NR PS+H S+++
Sbjct: 431 ANYLIKEGNSFRLFLKYGNLNMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSILSHF 490
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 491 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 549
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---QMFCPHRFLSPDIFKISKDSVWSGKQ 546
+++ QD +TAA+LL Q+ + RF P I +W+GKQ
Sbjct: 550 PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 609
Query: 547 LFSMLLPPDFEYTFPSK---DVYISGGKLISA------EGSSWL--RDYE---------- 585
+FS+L+ + + P K D KL+ E WL R+ E
Sbjct: 610 VFSVLMRSNKDC--PVKVNLDAACRQLKLVKGQPRDLCENDGWLCIRNSEMLCGVADKST 667
Query: 586 ------GNLFQYLIKRYRDKVLDFLYAA--------QEVLCEWLSVRGMTVSLSDLYLAS 631
N+F ++I+R DF YAA ++ WL+ +G ++ ++D+Y
Sbjct: 668 IGAGKKDNIF-FVIQR------DFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPG- 719
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQ----LMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
E L++ FQQ + S M DS T
Sbjct: 720 ----------ESLVRLKDTLINTAFQQCDDLITAASKEKPQMGKSDSRQT---------A 760
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E + + L++ A ++ ++ SK N+ L M GSKG+ + + Q +G
Sbjct: 761 ENEITGILNKVRQQAGEYCISEL--------SKHNAPLIMATCGSKGSNINVSQMVAVVG 812
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q + + + + R ++ + V NSF +GL P E H++
Sbjct: 813 QQSIENARVSKGFQDRTLPHFAR--------HSQHALAKGFVRNSFFSGLTPTEFLFHAM 864
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------N 857
+ R+ G ++RRLM + DL T YD TVR++ + I+QF Y N
Sbjct: 865 SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDS-SSFIIQFQYGDDQLDPVN 923
Query: 858 IEGTSTP 864
+E ++ P
Sbjct: 924 MEASAKP 930
Score = 54.7 bits (130), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ N ++ C +CG D + C GHFG+++ H + ++L IC C I
Sbjct: 65 DPRLGISNKSDTCETCGG-DLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKI 123
Query: 106 -----------RKERQKGAGSSRKEQ--PRVCKYCVRNPAQWY 135
++ R+ G + R+ Q R+ C + P +Y
Sbjct: 124 LLPEDERRSYLKELRRPGLDNLRRMQINKRINVRCRKTPVCYY 166
Score = 48.9 bits (115), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I+ R+ +++ GI+A + + S +S G I P H+ ++A+ ++ G
Sbjct: 1264 DGIEGHRTRTNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKG 1321
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D +QG + + GK
Sbjct: 1322 EVLGITRFGLAKIR-----DSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTI 1376
Query: 1250 SVGTG 1254
S+GTG
Sbjct: 1377 SLGTG 1381
>gi|157741580|gb|ABV69495.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 166/634 (26%), Positives = 273/634 (43%), Gaps = 106/634 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L I R
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPESVTPFNISKLKNLI-IR 320
Query: 373 LLEK--GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSI 420
E G Y+ R+ RID AL++G + R + DGDI+L NR P
Sbjct: 321 GPENHPGARYIIRENN----ERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNRQPX- 375
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 ------XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPL 428
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V LS + + ++ P P IFK
Sbjct: 429 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIMLWVPDWDGVIPQPAIFK-- 486
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 487 PRPRWTGKQIISMVLPPALNLVRIDGKASQPAGERFAPAGDSGLFVADGQLMFGLFNKKS 546
Query: 597 -----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + F AQ V+ WL G ++ + D + KI
Sbjct: 547 VGTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDFGTVEKI- 604
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQ 697
F+ + + + + +E +L G ++ ++E + SAAL+
Sbjct: 605 ---------------KFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNG 649
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 650 ARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRI 700
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH D + +K + VENS+L GL P E F H++ R
Sbjct: 701 PFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGR 746
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ + ++ YD TVR++ GN IVQF Y +G I
Sbjct: 747 EGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFVYGEDGLD--GAHI 803
Query: 869 GDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
Q V A+S+ A+ L + + L+E L+
Sbjct: 804 ESQRV---DVIAMSDQAFEKLFR-VDLMEPKKLV 833
>gi|119643711|gb|ABL85584.1| RNA polymerase II largest subunit [Vulpicida pinastri]
Length = 996
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/577 (24%), Positives = 263/577 (45%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 269 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 328
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD ++ H S+
Sbjct: 329 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFXXXXXXHKESM 384
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 385 MGHSVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 443
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ Q+ + ++ P + P + ++W+G
Sbjct: 444 QRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTG 503
Query: 545 KQLFSMLLPPDFEYTFPSKDVY---------ISGGKLISAEGSSWLRDYEGNLFQYLI-- 593
KQ+ S+++P S++ + ISGG+L+ + + G +++
Sbjct: 504 KQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISGGELMYGLLNKKVVGASGGGVIHIVFN 563
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D + ++ ++ +E
Sbjct: 564 EKGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRDTIAQ---IERAVIAQKE---- 616
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + ++ + SL G ++ ++E + S AL++A DA ++
Sbjct: 617 ----------EVTAITASATANELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 666
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 667 DL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 714
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ G
Sbjct: 715 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 764
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 765 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 800
>gi|157741552|gb|ABV69481.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
Length = 999
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 156/586 (26%), Positives = 254/586 (43%), Gaps = 88/586 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L I R
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLI-IR 320
Query: 373 LLEK--GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSI 420
E G Y+ R+ RID AL+ G + R + DGDI+L NR P
Sbjct: 321 GPENHPGARYIIRENN----ERIDLRYHKDLKGIALKTGWKVERHIMDGDIILFNRQPX- 375
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 ------XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPL 428
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V LS + + ++ P P IFK
Sbjct: 429 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIMLWVPDWDGVIPQPAIFK-- 486
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 487 PRPRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPVGDSGLFVADGQLMFGLFNKKS 546
Query: 597 -----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + F AQ V+ WL G ++ + D + KI
Sbjct: 547 VGTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDFGTVEKI- 604
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQ 697
F+ + + + + +E +L G ++ ++E + SAAL+
Sbjct: 605 ---------------KFEVDKKKAEVERITESAVAEDLEALPGMNVRETFESKVSAALNG 649
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
A +A A + KD N+ + M +AGSKG+ + + Q + +G Q S+A
Sbjct: 650 ARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVG-QQSVA--G 697
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P D + +K + VENS+L GL P E F H++ R+
Sbjct: 698 KRIPFGFKYRTLPHFAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREGLIDT 752
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 753 AVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFVYGEDG 797
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 171 bits (434), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 159/606 (26%), Positives = 272/606 (44%), Gaps = 80/606 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L ++ Q
Sbjct: 452 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCSVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIELDQLLNMLYWVPDWDGIIPTPAIIKPVP 570
Query: 541 VWSGKQLFSMLLPPDFEY--------TFPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSIAIPKGIHLQRFDEGTTMLSPKDNGMLIIDGQIIFGVVDKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + ++ ++ Q+V+ W G + + D + M EI +
Sbjct: 631 HVVTREKGPQICAKMFGNIQKVVNFWFLHNGFSTGIGDTIADGGT------MKEITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A+ +++ ++ N L++AK + R S+E L++A A +
Sbjct: 685 DAKRKV--EEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++ +L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLNDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G G I Q + ++
Sbjct: 834 TGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDGID--AGHIEKQSIDTIGG-- 888
Query: 881 ISEAAY 886
S+AA+
Sbjct: 889 -SDAAF 893
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHIG 94
Query: 87 FLSDIAKLLNSICPKC 102
F+S I K+ IC C
Sbjct: 95 FISKIKKVCECICMHC 110
>gi|340939410|gb|EGS20032.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1541
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 165/602 (27%), Positives = 263/602 (43%), Gaps = 92/602 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ ++++ +P VA+ L ER+N N E+L I+ G
Sbjct: 369 GKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRQRVINGPNNWPG 428
Query: 378 ELYVCRKGGL----------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+ + +K G +R R + L+ GDI+ R L D DIVL NR PS+H S+++
Sbjct: 429 AMGIIKKDGAKFNLKIGTEALRERHANDLQFGDIVERHLEDNDIVLFNRQPSLHKLSIMS 488
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
VKV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + LI ++
Sbjct: 489 HLVKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLITPKN 547
Query: 488 GRNLLSLGQDSLTAAHLLME-----DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVW 542
G +++ QD +TAA+LL D +++ Q L P I K +W
Sbjct: 548 GEPIIAATQDFITAAYLLSSKDKFFDRETFTYICTQMLLGETHLDLPPPAIMK--PRCLW 605
Query: 543 SGKQLFSMLLPPDFE-----------YTFPSK------DVYISGGKLISAEGS------- 578
+GKQ+F++L+ P+ E F K D+ I L+
Sbjct: 606 TGKQIFNVLMRPNKECPVLVNLDAKNKVFSKKKDGHPPDMDIDDAFLVVRNSEVMCGRMD 665
Query: 579 -SWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE----WLSVRGMTVSLSDLYLASHS 633
+ + + N Y+I RD D+ AA L + L++RG ++ + D++ +
Sbjct: 666 KATVGGGKKNSVFYVI--LRDYGPDYAAAAMNRLAKLCARMLTLRGFSIGVGDVWPSGPL 723
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
+ K + E +A C+ +L+ L A +L E S
Sbjct: 724 TAHKAKLVE------DAYKRCD--ELIETYRQGKLEKAPGCSMEETL-------ENMISG 768
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LSQ A + + N +N+ L M K+GSKG+ + + Q C+G Q
Sbjct: 769 ILSQVRQQAGNYCVDSLSN--------NNAPLIMAKSGSKGSDINVAQMIACVGQQIISG 820
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + +K + V NSF TGL P E H+++ R+
Sbjct: 821 K---RVPDGFQDRSLPHFHKNARQPPSKGF-----VRNSFYTGLTPSEFLFHAISGREGL 872
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEGTST 863
G ++RRLM + DL T YD TVR + GN +VQF Y ++EG +
Sbjct: 873 VDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGN-VVQFQYGADRLDPVDMEGDAK 931
Query: 864 PT 865
P
Sbjct: 932 PV 933
Score = 43.5 bits (101), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 46 NPRLGL--PNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+PR+G N +C++C G +D C GHFG ++ P + H +L I L +IC
Sbjct: 63 DPRMGTSSTNRDAKCATCNMGLQD---CPGHFGHVRLPLPVFHIGYLKYIQTTLQNICKD 119
Query: 102 CKTI 105
C +
Sbjct: 120 CARV 123
>gi|321260548|ref|XP_003194994.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
gattii WM276]
gi|317461466|gb|ADV23207.1| DNA-directed RNA polymerase III largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1463
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 163/615 (26%), Positives = 269/615 (43%), Gaps = 111/615 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V+ DPN+++ E+ +P +VA +L ER+ +N + + I+ L G
Sbjct: 362 GKRVDFSGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPG 421
Query: 378 ELYVCRK---GGLVRI------------RRIDALELGDIIYRPLTDGDIVLINRPPSIHP 422
+ RK G VRI R L++GD+++R + DGDIVL NR PS+H
Sbjct: 422 ANVLERKHENGSTVRISLNVMKDLEARKRYARELQIGDVVHRHVRDGDIVLFNRQPSLHK 481
Query: 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQL 482
S++ V+V P + +N C+P++ DFDGD ++ ++PQ AR E EL+++ K L
Sbjct: 482 LSIMCHRVRVRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMSVKKNL 540
Query: 483 INQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKIS 537
+ ++G +++ QD +TAA+LL Q Q+ + L P I+K
Sbjct: 541 VTPRNGEPIIAAIQDFITAAYLLSRRDRFYDRQQFTQIASYLGDANLKIEMPPPTIWKPV 600
Query: 538 KDSVWSGKQLFSMLL--------------------PPDFEYTFPSKDVYISGGKLISAEG 577
+ +W+GKQ+F++L+ P E FP D+ + G L+
Sbjct: 601 R--LWTGKQIFNLLMRPNKESKVLVNLEAKCRTLVDPAKEDRFPP-DMSPNDGYLVIQNS 657
Query: 578 SSWLRDYEGN---------LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL 627
++ N +F +++ Y ++ + ++ WL+ G ++ ++D+
Sbjct: 658 EIMCGVFDKNTVGDGKKNSVFGVILRDYGPEEAAQAMNRLAKIAARWLANIGFSLGINDV 717
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVD-SHMNFLMSAKDSESTRSLQGEHLS 686
+ K E YG C+ + +D + L +A + +L
Sbjct: 718 IPGPILHASKDARVEKAYG------ECD---VFIDLAKRGKLENAPGCDQEATL------ 762
Query: 687 YEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCL 746
E + S LS K ++ S+ N+ L M GSKG+++ + Q C+
Sbjct: 763 -ESKISKTLSDVREAVGKICMQEL--------SRHNAPLIMATCGSKGSVINVAQMVACV 813
Query: 747 GLQ---HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPL 800
G Q S F+ PH R +K + V NSF +GL P
Sbjct: 814 GQQIIGGSRVRNGFQDRSLPH---------FRKKSKNPPSKGF-----VRNSFFSGLTPP 859
Query: 801 ECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN- 857
E H+++ R+ G + RRLM + DLCT YD +VRN+ G IVQF Y
Sbjct: 860 EFLFHAMSGREGLVDTAVKTAETGYMARRLMKALEDLCTHYDLSVRNSVGG-IVQFQYGD 918
Query: 858 -------IEGTSTPT 865
+EG +TP
Sbjct: 919 DMLDPACLEGDATPV 933
Score = 43.5 bits (101), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+ R+G +C++CG +D + C GH+G+IK + H + +L+ IC C +
Sbjct: 67 DARMGPNEKGKKCATCG-EDTQKCVGHYGYIKLVLPVFHIGYFRPTINMLSCICKTCARV 125
>gi|111278799|gb|ABH09097.1| RNA polymerase II largest subunit [Ramichloridium anceps]
Length = 1002
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 145/576 (25%), Positives = 249/576 (43%), Gaps = 65/576 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L ++
Sbjct: 264 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTPFNLDKLKRLVANG 323
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G Y+ R G RID L+ G + R + D D++L NR PS+
Sbjct: 324 PTEHPGARYIIRDTG----ERIDLRHHKRTGDVVLQYGWKVERHIQDRDVILFNRQPSLX 379
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL L +
Sbjct: 380 XXXXXXXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCMVPLN 438
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V L+ Q+ + ++ P + P I
Sbjct: 439 IVSPQRNGPLMGIVQDTLCGIYKVCRRDVFLTRDQVMNIMLWVPDWDGVIPQPAIIKPRP 498
Query: 541 VWSGKQLFSMLLPPDFEYTF----------PSKDVYI---SGGKLISAEGSSWLRDYEGN 587
W+GKQ+ SM+LP PS D I G ++ ++ G
Sbjct: 499 RWTGKQMISMILPTALNLERVDAKGEDKWNPSSDTGILVLEGELMLGLFSKKFVGTSAGG 558
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ + + + F AQ V+ WL G ++ + D + ++
Sbjct: 559 VIHTIFNELGHEAAMAFFNGAQTVVNYWLLHHGFSIGVGDTVPDPETVAK---------- 608
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
QD + ++ VD+ L + KD ++E + AL+QA A
Sbjct: 609 ---IQDAVDTKKAEVDAIT--LQAYKDDLEPLPGMNVRQTFESKVMNALNQARDQAGAAT 663
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
+++L N+ + M +AGSKG+ + + Q + +G Q A R P
Sbjct: 664 ENSLKDL--------NNAIQMARAGSKGSTINIAQMTAIVGQQ---AVEGKRIPFGFKYR 712
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTL 824
D + ++ + VENS+L GL P E F H++ R+ G +
Sbjct: 713 TLPHFAKDDYSAPSRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 767
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 768 QRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYGEDG 802
>gi|397135840|gb|AFO11415.1| RNA polymerase I, partial [Kazachstania viticola]
Length = 871
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 280/643 (43%), Gaps = 75/643 (11%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 265 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L +L L + + + P + P I
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRILTLRDTFLEFDHVLNMLYWVPDWDGVIPPPAIIKPKP 383
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+W+GKQ+ S +P KD + I G + + G L
Sbjct: 384 LWTGKQILSAAIPKGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + EI +
Sbjct: 444 HVVTREKGPQVCARLFGNIQKVVNFWLLHNGFSTGIGDTIANGET------IKEITETIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + + ++ N L++AK + R S+E L++A A +
Sbjct: 498 EAKKKV--ENVTKEAQSN-LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGR---- 544
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
LA + N++ M AGSKG+ + + Q S C+G Q R P+
Sbjct: 545 ----LAEVNLNDSNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGK---RIPYGFVDRTL 597
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTR 826
D + +K + VENS+L GL P E F H++ R+ G + R
Sbjct: 598 PHFSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 652
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAY 886
RL+ + D+ YD T RN+ GN ++QF Y +G I Q + ++ +
Sbjct: 653 RLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDGID--ASHIEKQSIDTIGGSDSAFEKR 709
Query: 887 SALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKL 929
+D LLN+KN L+ +S ++ T L L + L
Sbjct: 710 YRID----------LLNVKNSLDPTLLESGSEITGDLKLQSLL 742
>gi|294659690|ref|XP_462102.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
gi|218511816|sp|Q6BI69.2|RPC1_DEBHA RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|199434160|emb|CAG90588.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
Length = 1457
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 158/616 (25%), Positives = 268/616 (43%), Gaps = 114/616 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + +S + G
Sbjct: 367 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPG 426
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++ R++ L +GD++ R + DGDIVL NR PS+H S+++
Sbjct: 427 ANYLLKQNESAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSILSHY 486
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 487 AKIRPWRTF-RLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPKSGE 545
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKISKDSVWSG 544
+++ QD +T ++L+ + QL + P IFK +W+G
Sbjct: 546 PIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKPV--MLWTG 603
Query: 545 KQLFSMLLPPDFE-------------YTFPSKD-----------VYISGGKLISA--EGS 578
KQ+FS+L+ P+ + YT P+K V I G +++S + S
Sbjct: 604 KQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNEMSPNDGFVIIRGSQILSGVMDKS 663
Query: 579 SWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ + ++F +++ Y D+ + + ++ +L RG ++ ++D+ S +K
Sbjct: 664 TLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSDLKQKK 723
Query: 638 ILMDEIFY------------GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
LM E Y G E Q CN +Q + + G L
Sbjct: 724 ELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTL-----------------EAKIGGLL 766
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
S ++ + +D+ N+ L M GSKG+ L + Q
Sbjct: 767 SKVREEVGEICINELDSA------------------NAPLIMATCGSKGSTLNVSQMVAV 808
Query: 746 LGLQ---HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
+G Q + P F+ PH T+ +K+ V NSF +GL P
Sbjct: 809 VGQQIISGNRVPDGFQDRSLPH--------------FTKNSKTPQSKGFVRNSFFSGLTP 854
Query: 800 LECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E HS++ R+ G ++RRLM + DL YD TVRN+ N IVQF+Y
Sbjct: 855 PEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRNS-SNGIVQFTYG 913
Query: 858 IEGTSTPTGEIGDQPV 873
+G E +PV
Sbjct: 914 GDGLDPFDMEGDARPV 929
Score = 45.4 bits (106), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
++G+ + NEC++C + +C GHFG IK + H + ++L IC C +
Sbjct: 57 KMGISSNANECATCHG-NLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLL 115
Query: 108 ERQ 110
+ Q
Sbjct: 116 DEQ 118
>gi|321458572|gb|EFX69638.1| hypothetical protein DAPPUDRAFT_62003 [Daphnia pulex]
Length = 1238
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 183/697 (26%), Positives = 313/697 (44%), Gaps = 103/697 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ ++G+P VA+ L +N N E + + + + G
Sbjct: 209 GKRVDFSGRTVISPDPNLRIDQVGVPEMVAKILTYPTLVNEANIELMRKLVRNGPDIHPG 268
Query: 378 ELYVCRKGGLVRI------RRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
+++ +K + I R A L+ GD+I R + D DIVL NR PS+H S++
Sbjct: 269 AIFLKKKVSKLTISLKHGNRETLARNLKRGDVIERHMMDEDIVLFNRQPSLHKLSIMCHR 328
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+LP N C+P++ DFDGD + + PQ AR E L+ L+ ++G
Sbjct: 329 AKILP-HRTFRFNECVCTPYNADFDGDEMTLHFPQTEEARAEALILMTNKSNLVTPRNGE 387
Query: 490 NLLSLGQDSLTAAHLL-MEDS---------VLLSHLQMQQLQMFCPHRFLSPDIFKISKD 539
L++ QD +T A+LL ++D+ ++ S L ++ M + P I K +
Sbjct: 388 LLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVI--KLPPPCIQKPA-- 443
Query: 540 SVWSGKQLFSMLLPPD-------------FEYTFPSKDVYISGGKLI---------SAEG 577
++WSGKQ+FS++L P+ EY+ +++ ++ G L+ +
Sbjct: 444 ALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSKKNEEFCVNDGFLLVRNSEVLAGCVDK 503
Query: 578 SSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE----WLSVRGMTVSLSDLYLASHS 633
S+ + N+F L++ Y + DF A LC ++ RG ++ + D+
Sbjct: 504 STIGSGSKINIFYVLLRDYGE---DFAIQAMWKLCRVASYYMMNRGFSIGIGDV------ 554
Query: 634 CSRKILMDEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRS 692
K L+ E L C+ + +L+ + L K ES S + LS + ++
Sbjct: 555 TPGKTLLKEKQKLLDSGFSKCDEYIRLLSIGQLPCLPGCKKEESLESKITKELSGIRDQA 614
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSL 752
+ + + NS L M K+GSKG+ + + Q C+G Q
Sbjct: 615 GEVCKKKLHP------------------SNSPLVMSKSGSKGSYINISQMIACVGQQ--- 653
Query: 753 APLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
A R P+ + + AK + V NSF +GL+P E F +++ R+
Sbjct: 654 ALNGKRVPNGFEDRSLPHFKRHSKIPAAKGF-----VSNSFYSGLSPTEFFFLAMSGRE- 707
Query: 813 SFSDNADL---PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
D A P + RRL+ F+ DLC YD TVRN+ G +I+QF Y +G E
Sbjct: 708 GLVDTAVTTAEPMYMQRRLIKFLEDLCCQYDSTVRNSAG-EIIQFVYGGDGLDPTYMEAK 766
Query: 870 DQPVGSLSACAISEAAYSALD-QPISLLETSPLLNLKNVLECGSKKS---NADQTMSLFL 925
D+PV +AA+S D +P+ +E N +++ S K + + +F+
Sbjct: 767 DRPVDFHRGFEHVKAAFSFPDEEPLDDIELQQAFN--TIMDTDSFKMLGVDFQHELRVFV 824
Query: 926 SN---KLGKRRHGFEYGA---LEVKNHLECLMLSDIV 956
+ ++ K R F+ L V+ HLE + + +V
Sbjct: 825 ESQVKRIKKVRQLFKMEGRSLLTVEKHLERITVGQLV 861
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 1115 TSLWSALM--NDCHQIMDM--IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTG 1170
T +S L+ N+ ++M I + + +NI GI+A ++S + G
Sbjct: 1069 TPRYSLLVEGNNMREVMATYGIQGSSTTSNNILEVFSTLGIEAAKATIAKEIQSTMESHG 1128
Query: 1171 KNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKA 1230
++ H+ ++++ +S GE +G+ GLA + SS + A F AA
Sbjct: 1129 MSVDRRHVALLSDLMSCRGEILGITRHGLAKMK-----SSVLMLASFERTSDHLFDAAYY 1183
Query: 1231 GAVDNLQGSVDALGWGKVPSVGTGGHFDIIY 1261
G D + G + + G +GTG F ++Y
Sbjct: 1184 GQEDEVSGVSERIIMGVPMGIGTGS-FKLLY 1213
>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
Length = 1436
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 158/604 (26%), Positives = 270/604 (44%), Gaps = 90/604 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P +VA+ L ER+ S N E+L + + + + G
Sbjct: 382 GKRVDFSARTVISPDPNLRIDEVAVPEKVAKILTYPERVTSHNLEQLRKAVRNGKEVHPG 441
Query: 378 ELYVCRKGGLVR--------IRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ I L +GD++ R L D DIVL NR PS+H S+++
Sbjct: 442 ACYVISAATGIKKDLKYGNPIELAKQLRIGDVVERHLRDDDIVLFNRQPSLHKLSIMSHR 501
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P + +N C+P++ DFDGD ++ ++PQ AR E L+++ + L+ ++G
Sbjct: 502 VKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARTEAAHLMSIKQNLVTPRNGE 560
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-----RFLSPDIFKISKDSVWSG 544
+++ QD +T A LL L+ ++ Q+ + P I + + +W+G
Sbjct: 561 PIIAATQDFITGAFLLSRRDKFLNRAEIGQILCYLTDAEGDLELPPPTILRPKQ--LWTG 618
Query: 545 KQLFSMLLPPDFE-----------YTFP------SKDVYISGGKLI--------SAEGSS 579
KQ+FS+L+ P TF + D+ + G L+ A +
Sbjct: 619 KQVFSVLMRPSSRSSICVNLEAKCRTFEAPPAGYAPDMSPNDGYLVIENSVIMCGALDKA 678
Query: 580 WLRDYEGN-LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ D + N +F L++ Y D + ++ WL+ +G ++ +SD+
Sbjct: 679 TVGDGKKNSVFGVLLRDYGADAAAQAMNRLSKLCARWLTNQGFSIGISDVTPGDK----- 733
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
L DE +R+A + N L+ + L +A + ++L E S LS+
Sbjct: 734 -LRDEKDDRIRKAYEESNL--LITQAAHGKLENAAGCDQDQTL-------EASISGVLSR 783
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP--- 754
V + + S++N+ L M GSKG+ + + Q C+G Q +
Sbjct: 784 --------VRDKVGEICMTELSRNNAPLIMAICGSKGSKINVCQMVACVGQQITNGKRVA 835
Query: 755 ---LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
++ PH L + +K+ V NSF +GL E F H+++ R+
Sbjct: 836 DGFINRSLPHYL--------------KKSKNPPSKGFVRNSFYSGLTATEFFFHAISGRE 881
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRLM + DL T YD +VR++ G+ IVQF Y +G E
Sbjct: 882 GLVDTAVKTAETGYMQRRLMKALEDLSTRYDLSVRSSTGS-IVQFMYGNDGLDPAYMEGD 940
Query: 870 DQPV 873
PV
Sbjct: 941 GSPV 944
Score = 47.4 bits (111), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC- 102
V + RLG+ + + C +CG + K C GH+G+IK + H + ++L IC C
Sbjct: 85 VLDRRLGIADKKSNCETCGER-AKECVGHYGYIKLTVPLFHTGYFRKTIEILQVICKVCS 143
Query: 103 KTIRKERQKGAGSSRKEQP 121
+T+ + Q+ A + +P
Sbjct: 144 RTLLDDDQQRAALRKLRRP 162
>gi|255722720|ref|XP_002546294.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
gi|240130811|gb|EER30373.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
Length = 1159
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 160/602 (26%), Positives = 270/602 (44%), Gaps = 86/602 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + + G
Sbjct: 366 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQRLVYNGPDTYPG 425
Query: 378 ELYVCRKG--GLVRIRRIDA------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ G +R D L++GD++ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYVAKQNEPGKRNLRFGDRAKLAKNLQIGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLLMED---------SVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QD +T ++L+ S LLS + +Q P P IFK
Sbjct: 545 PIIAATQDFITGSYLISHKDSFFDRASLSQLLSMMSDANIQFDIP----PPAIFKPV--M 598
Query: 541 VWSGKQLFSMLLPPDFE-----------YTF--PSKD-----------VYISGGKLISA- 575
+W+GKQ+FS+L+ P+ + TF P+K V I G +++S
Sbjct: 599 LWTGKQVFSLLIKPNKQSKVVINLDAKNKTFHPPAKGLPNEMSPNDGFVVIRGSQILSGL 658
Query: 576 -EGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
+ S+ + ++F +++ Y + + + ++ +L RG ++ ++D+ A
Sbjct: 659 MDKSTLGDGKKHSVFYTILRDYGPQEAANAMNRMAKMCARYLGNRGFSIGINDVTPADEL 718
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
+K LM E Y L D ++ K T+ E + E +
Sbjct: 719 KQKKELMVEQAY-------------LKCDQLIDLYNRGK--LETQPGCNEEQTLEAKIGG 763
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS+ + + ++ +L N+ L M GSKG+ L + Q +G Q
Sbjct: 764 LLSKVREEVGEVCIRELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---I 812
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + T +K + V NSF +GL P E H+++ R+
Sbjct: 813 ISGHRVPDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLTPPEFLFHAISGREGL 867
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G ++RRLM + DL T YD TVRN+ N IVQF+Y +G E +
Sbjct: 868 VDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAR 926
Query: 872 PV 873
PV
Sbjct: 927 PV 928
Score = 45.1 bits (105), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G+ + ECS+C + +C GHFG I+ + H + I +L IC C +
Sbjct: 57 RMGISSNAQECSTCHG-NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKNCAAV 113
>gi|31127003|gb|AAF26621.2|AF138971_1 RNA polymerase II largest subunit [Semibalanus balanoides]
Length = 624
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 156/607 (25%), Positives = 268/607 (44%), Gaps = 108/607 (17%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A L E + +N +++ + + G Y+ R
Sbjct: 3 RTVITADPNLRIDQVGVPKTIALNLTYPEIVTPFNIDKMQDLVKRGNNQYPGAKYIIRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + DGD+V+ NR P++H S++ VKVLP
Sbjct: 63 G----ERIDLRFHPKPSDLHLQCGYKVERHIIDGDLVIFNRQPTLHKMSMMGHRVKVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N SP++ DFDGD ++ ++PQ++ R E+ + + ++ QS + ++ +
Sbjct: 119 STF-RMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHVTPRMIVTPQSNKPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V L +M + MF P + P I K +W+GKQLFS+++
Sbjct: 178 QDTLTAVRKMTKRDVFLEKEEMMNMLMFLPTWDGKIPVPAIIK--PRPLWTGKQLFSLII 235
Query: 553 P------------PDFEYTFPSK-------DVYISGGKLI------SAEGSSWLRDYEGN 587
P PD E + P K V + G+LI + G+S G+
Sbjct: 236 PGNVNMVRTHSTHPDDEDSGPYKWVSPGDTKVLVDNGELIMGILCKKSLGAS-----AGS 290
Query: 588 LFQY-LIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L ++ D F + Q V+ WL G ++ + D + S +I
Sbjct: 291 LLHICWLELGHDIAGHFYHDIQSVVNAWLLYEGHSIGIGD------TISDPDTYSDIQNT 344
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAF 703
+R+A++ + Q++ +H + L + ++ + L+ + ++ A ++ S+ +
Sbjct: 345 IRKAKE--DVIQVIEKAHNDELEPTPGNTLRQTFENHVNRILNDARDKTGASAKNSLGEY 402
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR-- 758
N+L AM AGSKG+ + + Q C+G Q+ P FR
Sbjct: 403 ------------------NNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKR 444
Query: 759 -FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFS 815
PH + Y P + VENS+L GL P E + H++ R+
Sbjct: 445 TLPHFIK----------------DDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLID 488
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G + RRL+ M + YDGT+RN+ Q+VQ Y +G + E P
Sbjct: 489 TAVKTAETGYIQRRLIKAMESVMVNYDGTLRNSVA-QLVQLRYGEDGLAGEFVEFQSLPT 547
Query: 874 GSLSACA 880
LS A
Sbjct: 548 IKLSDAA 554
>gi|409049560|gb|EKM59037.1| hypothetical protein PHACADRAFT_169499 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1403
Score = 171 bits (433), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 174/666 (26%), Positives = 287/666 (43%), Gaps = 88/666 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LEKG 377
GKR D R V++ DPN+++ E+ +P +VA+ L ER+ N E L I + G
Sbjct: 351 GKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTQHNLEILKKAIRNGCDVHPG 410
Query: 378 ELYVCR-KGGLVRIRRI-------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV G + + D L +GDI+ R + DGDIVL NR PS+H S++
Sbjct: 411 ANYVTAGSSGFKKFLKFGNRNAIADGLRVGDIVERHIVDGDIVLFNRQPSLHKLSIMCHR 470
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P S +N C P++ DFDGD ++ ++PQ AR E EL+++ L+ ++G
Sbjct: 471 VKVRPWRSF-RLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGE 529
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGKQ 546
+++ QD +TA+ LL Q Q+ + L DI + +W+GKQ
Sbjct: 530 PVIAAIQDFITASFLLSRRDRFFDRCQFTQICSYLADADLQIDIPPPTILKPQRLWTGKQ 589
Query: 547 LFSMLL-----------------------PPDFEYTFPSKDVYISGGKLI--SAEGSSWL 581
+F++L+ P + P D+ + G L+ ++E +
Sbjct: 590 IFNVLMRPNRHSRVRVNVESRCNKVEKPDPKAYPRMTPVDDMSPNDGWLVIVNSEIMCGV 649
Query: 582 RDY-------EGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHS 633
D + ++F +++ Y LC +L+ G ++ ++D+
Sbjct: 650 MDKATVGSGKKKSIFGVILRDYGPHEAATAMGRLAKLCARYLANYGFSLGINDVIPGPIL 709
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
++K M +++A C+ L+ + L + + ++L E S+
Sbjct: 710 AAQKESM------VQKAYAECD--DLIARAKKGLLENKPGCDQEQTL-------EAMISS 754
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS +V + + K S+ N+ L M +GSKG+++ + Q C+G Q +A
Sbjct: 755 VLS--------NVREKVGEICMKELSRHNAPLIMATSGSKGSVINVSQMVACVG-QQIIA 805
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + +K + V NSF TGL P E H+++ R+
Sbjct: 806 --GHRVPDGFQDRSLPHFPKKSREPPSKGF-----VRNSFYTGLTPTEFLFHAISGREGL 858
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G + RRLM + DL T YD +VRNA G +VQF Y +G E Q
Sbjct: 859 VDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGG-VVQFRYGDDGLDPACLEGDAQ 917
Query: 872 PVGSLSACAISEAAYSALDQ---PISLLE--TSPLLNLKNVLECGSKKSNADQTMSLFLS 926
PV L A + + A S + P +LE L K EC + + T+ F+S
Sbjct: 918 PVEYLRAWSHASAIASRSSRGLFPFEILEFVNQELAKPKFTGECSAAYLS---TIREFVS 974
Query: 927 NKLGKR 932
+ +R
Sbjct: 975 EHIAQR 980
>gi|453086139|gb|EMF14181.1| DNA-directed RNA polymerase III subunit RPC1 [Mycosphaerella
populorum SO2202]
Length = 1484
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 164/624 (26%), Positives = 270/624 (43%), Gaps = 115/624 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-------- 370
GKR D R V++ DPN+ + E+ +P +VA + ER+ N+E+L C+
Sbjct: 374 GKRVDFSGRTVISPDPNLAIDEVAVPSRVAVIMTYPERVTKHNYEKLKACVKRGDKVHPG 433
Query: 371 ----FRLLEKGELY---VCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
+ +K L V +KG L ++ D LE+GDI+ R L DGDIVL NR PS+H
Sbjct: 434 ANFVIKGRDKRRLVLKVVGQKGDLKKV--ADQLEIGDIVERHLEDGDIVLFNRQPSLHKL 491
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S+++ K+ P + +N C+P++ DFDGD ++ ++PQ AR E TEL+ + L
Sbjct: 492 SILSHRAKIRPWRTF-RLNECVCNPYNADFDGDEMNLHVPQTEEARTEATELMGVKNNLS 550
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC---------------PHRF 528
++G +++ QD +T A+L+ + S + F P
Sbjct: 551 TPKNGSPIIAAIQDFITGAYLISQKDRFFSRRHFTHVVGFMYNAMQAKDPYTGKEYPIVI 610
Query: 529 LSPDIFKISKDSVWSGKQLFSMLLP--PDF-----------EYTFPSK----------DV 565
P I+K ++W+GKQ++++L+ PD+ +Y P++ D
Sbjct: 611 PPPAIWK--PQALWTGKQIWNLLIKPHPDYPVNVNLEARLKQYAPPTRPNDIPDMVDTDS 668
Query: 566 YI---SGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCE----WLSVR 618
Y+ + + + + D + + Y+I RD D+ AA L + WL +
Sbjct: 669 YLVIRNSEVMCGGFDKATIGDGKKDSLFYVI--MRDFGADYAAAAMTRLAKLSARWLGEQ 726
Query: 619 GMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
G ++ +SD+Y + RK+ + E Y C+ + K + R
Sbjct: 727 GFSIGISDVYPSEKLTKRKLNLVETAY------RKCD----------EIIHKFKTGKLER 770
Query: 679 SLQ-GEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLL 737
S E + E S LS+ + F ++ SK N+ + M K GSKG+ +
Sbjct: 771 SAGCDEEQTMEIMLSGILSKVRQECGDACFAEL--------SKYNAPMTMAKCGSKGSNI 822
Query: 738 KLVQHSLCLGLQ-----HSLAPLSFR-FPHELSCAAWNRLRAGDNTECAKSYIPSAVVEN 791
+ Q +G Q L R PH L + AK + V +
Sbjct: 823 NVSQMVAVVGQQIIGGKRVLEGFQDRTLPHFLKASP---------DPLAKGF-----VFD 868
Query: 792 SFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGN 849
SF +GL P E H+++ R+ G ++RRLM + DL YD TVRN+ G
Sbjct: 869 SFFSGLTPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDLTVRNSSGG 928
Query: 850 QIVQFSYNIEGTSTPTGEIGDQPV 873
IVQ + +G E +P+
Sbjct: 929 -IVQMKFGDDGLDPVDMEGNAKPI 951
Score = 46.6 bits (109), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 46/248 (18%)
Query: 1012 LKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTV 1071
+ IS+P+ S + S+ + +D + M V KR L + V
Sbjct: 1222 VNISLPEKERSRRQTSASKGRITESDGSELMFMQVHTLKRK--------------LPEVV 1267
Query: 1072 VKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSG----QCHITSLWSALMNDCHQ 1127
VKG+ + + I+ KD +K D G+ + V + G QC T
Sbjct: 1268 VKGYPDAHRA-IIKKDDKK------DRNGKEPISVFVEGYGLKQCMTT------------ 1308
Query: 1128 IMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSA 1187
D +D R+ +N+ GI+A + + +++ + +I P H+ ++A+ ++
Sbjct: 1309 --DGVDGYRTKSNNVMECRDVLGIEAARKTIIDEIDAVMGSM--DIDPRHMQLLADVMTY 1364
Query: 1188 TGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGK 1247
GE +G+ GLA R S + +F P F AAK D+++G + + G+
Sbjct: 1365 KGEVLGITRFGLAKMRD----SVLQLASFEKTPDHLFEAAAKMKK-DDIEGVSECIIMGQ 1419
Query: 1248 VPSVGTGG 1255
SVGTG
Sbjct: 1420 SMSVGTGA 1427
Score = 45.4 bits (106), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
RLG +C +CG + K C GHFG +K H +L I + +N +C C +
Sbjct: 68 RLGTSAKNGQCGTCG-QGLKECNGHFGHVKLALPCFHYGYLKRIIEAMNCVCKDCSRV 124
>gi|157741572|gb|ABV69491.1| RNA polymerase II largest subunit, partial [Verrucaria dolosa]
Length = 999
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 149/590 (25%), Positives = 252/590 (42%), Gaps = 96/590 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQFNISRLKQFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEMHPGARYIIRENN----ERIDLRYHKDTSGIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P+ DFDGD ++ + PQ+ R EL+ L +
Sbjct: 376 -----XXRVRVMPYST-FRLNLSVTTPYDADFDGDEMNLHAPQSEETRAELSRLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS + + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREDVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVADGQLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 548 GTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDVGTVEK---- 603
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 -------------IKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A ++++ N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEAGSATENSLKDI--------NNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|367030511|ref|XP_003664539.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
42464]
gi|347011809|gb|AEO59294.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
42464]
Length = 1555
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 166/602 (27%), Positives = 262/602 (43%), Gaps = 92/602 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ ++++ +P VA+ L ER+N N E+L I+ + G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPNIWPG 429
Query: 378 ELYVCRKGGL----------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+ +K G +R + +LE GD++ R L D DIVL NR PS+H S+++
Sbjct: 430 AQGIIKKDGAKYNLKIGTESLRQKHASSLEFGDVVERHLEDNDIVLFNRQPSLHKLSIMS 489
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
VKV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + LI ++
Sbjct: 490 HLVKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLITPKN 548
Query: 488 GRNLLSLGQDSLTAAHLLME-----DSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVW 542
G +++ QD +TAA+LL D +++ Q L P I K ++W
Sbjct: 549 GEPIIAATQDFITAAYLLSSKDRFFDRTSFTYICTQMLLGDTHLELPPPAILK--PRALW 606
Query: 543 SGKQLFSMLLPPDFEYTF------------PSKD-------------VYISGGKLISAEG 577
+GKQ+F++L+ P+ E P KD V + +
Sbjct: 607 TGKQIFNVLMRPNKESPVLVNLDAKNKVYKPKKDGQIPDMDIDDSFLVVRNSEVMCGRMD 666
Query: 578 SSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEW----LSVRGMTVSLSDLYLASHS 633
S + + N Y+I RD D AA L + L++RG ++ + D++ ++
Sbjct: 667 KSTVGGGKKNSVFYVI--LRDFGPDHAAAAMNRLAKLCARTLTLRGFSIGVGDVWPSTSL 724
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
K + E EA C+ L+ L A +L E S
Sbjct: 725 TKHKARLVE------EAYKKCD--DLIETYRQGKLEKAPGCNLEETL-------ENSISG 769
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS+ A + + NL S +N+ L M K+GSKG+ + + Q C+G Q
Sbjct: 770 ILSKVRQQAGDYC---VNNL-----SNNNAPLIMAKSGSKGSDINVAQMVACVGQQIIGG 821
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + +K + V NSF TGL P E H+++ R+
Sbjct: 822 K---RVPDGFQDRSLPHFHKNARQPPSKGF-----VRNSFYTGLVPTEFLFHAISGREGL 873
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEGTST 863
G ++RRLM + DL T YD TVR + G IVQF Y ++EG +
Sbjct: 874 VDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGG-IVQFQYGADRLDPVDMEGDAK 932
Query: 864 PT 865
P
Sbjct: 933 PV 934
Score = 44.3 bits (103), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 46 NPRLGL--PNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+PRLG N ++CS+C G ++ C GHFG ++ P + H +L I L +IC
Sbjct: 64 DPRLGTSSTNRESKCSTCHLGLQE---CPGHFGHVRLPLPVFHIGYLKYIQATLQNICKD 120
Query: 102 CKTI 105
C +
Sbjct: 121 CARV 124
Score = 42.7 bits (99), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A T + S + + NI P H+ ++A+ ++ GE +G+ GLA R
Sbjct: 1399 GIEAARATIATEIGSVMREM--NIDPRHMELLADVMTYKGEILGITRFGLAKMR-----D 1451
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260
S A F AA D +QG + + G+ S+GTG F ++
Sbjct: 1452 SVLQLASFEKTPDHLFDAAAGMKKDRIQGVSECIIMGQSMSIGTGA-FQVV 1501
>gi|157741556|gb|ABV69483.1| RNA polymerase II largest subunit, partial [Thelidium papulare]
Length = 999
Score = 171 bits (432), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 154/591 (26%), Positives = 256/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++ I
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL++G + R + DGDI+L NR P
Sbjct: 322 PEHHPGARYIIRENN----ERIDLRYHKDLKGIALKVGWKVERHIMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS + + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVADGQLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + KI
Sbjct: 548 GTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDFGTVEKI-- 604
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 605 --------------KFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDINNAIQMARAGSKGSTISISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFVYGEDG 797
>gi|157741600|gb|ABV69505.1| RNA polymerase II largest subunit, partial [Verrucaria nigrescens]
Length = 999
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 166/639 (25%), Positives = 280/639 (43%), Gaps = 116/639 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 488 RPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDIGTV 601
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ ++ D S + + + +E +L G ++ ++E + S
Sbjct: 602 EK----------IKSEVDKKK-------SEVERITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD- 799
Query: 864 PTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+ A+ L + + L+E L+
Sbjct: 800 -GAHIESQRV---DIIAMSDGAFEKLFR-VDLMEPKKLV 833
>gi|325185155|emb|CCA19646.1| DNAdirected RNA polymerase III largest subunit puta [Albugo
laibachii Nc14]
gi|325188545|emb|CCA23078.1| RNA polymerase III putative [Albugo laibachii Nc14]
Length = 1543
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 158/600 (26%), Positives = 264/600 (44%), Gaps = 86/600 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ ++G+P VA+ + E++ +N +L C+ + + G
Sbjct: 377 GKRVDFSGRTVISPDPNLRIDQVGVPQHVAKTMTYPEKVTRYNINKLRKCVVNGPNVHPG 436
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
+ +G + R D L++GD + R + DGD+VL NR PS+H S++A
Sbjct: 437 ANIIQLQGQNLTKNLSYGDRANMADDLKIGDTVERHMEDGDVVLFNRQPSLHKMSIMAHR 496
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV+P + N CSP++ DFDGD ++ ++PQ AR E L+ ++ +I ++G
Sbjct: 497 AKVMPWRTF-RFNECVCSPYNADFDGDEMNMHLPQTEEARTEALTLMGVEHNMITPRNGE 555
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGKQ 546
L++ QD LTA++LL + ++ + Q Q+ DI + I +W+GKQ
Sbjct: 556 PLVAATQDFLTASYLLTQKNIFFNREQFCQMIAIMSDAVEHIDIPEPAIIHPLRLWTGKQ 615
Query: 547 LFSMLLPP-DFEYTFPSKDV----YISGGKLISAEGSSWLRDYE---GN----------- 587
+ S+L+ P DF + ++ Y + + +G R+ E GN
Sbjct: 616 VISLLIKPNDFSKILVNLELKERNYTNNTYMCYKDGYVCFRNSELMCGNLCKKTLGDGSK 675
Query: 588 --LFQYLIKRYRDKVLDFLYAAQEVLC-EWL-SVRGMTVSLSDLYLASHSCSRK-ILMDE 642
LF LI+ + LC WL +G ++ + D+ + H +K L+
Sbjct: 676 QGLFYVLIRDHGSHEAARCMNRLAKLCARWLGGSKGFSIGIDDVTPSVHLMGKKNELLQS 735
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDA 702
+ G EA + +L + N + S + L G K R A ++
Sbjct: 736 GYNGANEAIEQYRLGKLPLKPGCNAIQSLES--ELNGLLG------KLRETAGAEC---- 783
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
++ L + N+ M + GSKG+ L + Q C+G Q
Sbjct: 784 -------MRTLPFH-----NNPRIMAECGSKGSALNISQMVACVGQQ------------- 818
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAV-------VENSFLTGLNPLECFIHSVTSRDSSFS 815
+ R+ G ++P A+ V NSF +GL E F H++ R+
Sbjct: 819 --SVSGKRVPEGFVNRTLPHFLPHALHAAAKGFVANSFYSGLTATEFFFHTMGGREGLVD 876
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G + RRLM + DL YD TVRN+ G +VQF Y +G + E D+PV
Sbjct: 877 TAVKTAETGYMARRLMKALEDLSCQYDRTVRNSEG-AVVQFMYGDDGLNPAFMEGDDRPV 935
Score = 49.7 bits (117), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 17 LTGISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAK 64
++ ++ G+ ++ E ++S M + A + V + RLG+ N ++ C +C +
Sbjct: 35 ISHLNFGLLSEVEMMRMSEMRVTSRDLFAVQSRDPAKNGVLDKRLGVSNKSDTCDTCSLR 94
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
C GHFG+IK + H F I ++L IC +C +
Sbjct: 95 -LSDCVGHFGYIKLELPVFHIGFFKAILEILQMICKECSRV 134
>gi|157741576|gb|ABV69493.1| RNA polymerase II largest subunit, partial [Verrucaria fuscula]
Length = 999
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 151/589 (25%), Positives = 259/589 (43%), Gaps = 94/589 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL++G + R + DGD+ L NR P
Sbjct: 322 PEMHPGARYIIREHN----ERIDLRYHKDTSQIALKVGWKVERHIMDGDVTLFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + LS Q+ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDEFLSREQVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L + +
Sbjct: 490 RWTGKQMVSMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVADGQLMFGMFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
+ + F AQ V+ WL G ++ + D + +KI
Sbjct: 550 GSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDVGTVQKI---- 604
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASV 700
+D + ++ V+ + + +E +L G ++ ++E + SAAL+ A
Sbjct: 605 --------KDEVDKKKAEVER----ITQSAVAEDLEALPGMNVRGTFESKVSAALNGARD 652
Query: 701 DAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLS 756
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 653 EA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFG 703
Query: 757 FRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 704 FKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREGL 749
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|111278793|gb|ABH09094.1| RNA polymerase II largest subunit [Capronia pilosella]
Length = 1001
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 148/588 (25%), Positives = 248/588 (42%), Gaps = 89/588 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N E+L V + +
Sbjct: 263 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTRFNVEKLKVLVKNG 322
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G YV R G RID L G + R + DGD++L NR PS+
Sbjct: 323 PNVHPGARYVIRDTG----ERIDLRHHKNLSEMTLGWGWKVERHIQDGDVILFNRQPSLX 378
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL L +
Sbjct: 379 XXXXXXXRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSQESRAELANLCMVPLN 437
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V L+ Q+ + ++ P + P I
Sbjct: 438 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTRGQVMNIMLWVPDWNGVIPQPAIIKPRP 497
Query: 541 VWSGKQLFSMLLPPDFEYT----------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
W+GKQ+ SM+LP P+ D + + G + ++ G
Sbjct: 498 RWTGKQMISMVLPNALNLERLDAKGEDPYVPTHDTGLMVLEGNLMFGLFSKKFVGTSAGG 557
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSD--------LYLASHSCSRKI 638
+ + + D + F AQ V+ WL G ++ + D L + S +K
Sbjct: 558 IIHTIFNEFGHDAAMAFFNGAQTVVNYWLLHTGFSIGIGDTVPDPDTVLKIQSAVDIKKE 617
Query: 639 LMDEI----FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
+ E+ + E N +Q MN L A+D +
Sbjct: 618 EVRELTVLAYNEELEPSPGMNVRQTFESKVMNSLNQARDQAGS----------------- 660
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
A+ D+ K + N+ + M +AGSKG+ + + Q + +G Q A
Sbjct: 661 ---ATEDSLKDL---------------NNAIQMARAGSKGSTINIAQMTAIVGQQ---AV 699
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R P D + ++ + VENS+L GL P E F H++ R+
Sbjct: 700 EGKRIPFGFKYRTLPHFAKDDYSAPSRGF-----VENSYLRGLTPTEFFFHAMAGREGLI 754
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 755 DXAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFIYGEDG 801
>gi|440634119|gb|ELR04038.1| hypothetical protein GMDG_06549 [Geomyces destructans 20631-21]
Length = 1478
Score = 171 bits (432), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 176/603 (29%), Positives = 269/603 (44%), Gaps = 99/603 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR D R V++ DPN+ ++E+ IP VA + ER++ N +L CI R K
Sbjct: 376 GKRVDFSGRTVISPDPNLSIEEVAIPILVATNMTYPERVHDRNIHKLRECIK-RGPGKWP 434
Query: 377 GELYVCRK--GGLVRIRRID------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G V +K G V ++ D L +GD++ R L DGDI+L NR PS+H S+++
Sbjct: 435 GANIVEKKMDGRKVSLKHADREYTANTLRVGDVVERHLEDGDIILFNRQPSLHKLSIMSH 494
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
VKV P + N C P++ DFDGD ++ ++PQ AR E L+ + L +SG
Sbjct: 495 YVKVRPWRTF-RFNECVCGPYNADFDGDEMNIHVPQTEEARTEAINLMGVKNNLCTPKSG 553
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK---ISKDSVWSGK 545
++S QD +TAA+LL L M+ + DI I +++W+GK
Sbjct: 554 EPIISATQDFITAAYLLSSKENFFDRKTFAHLCMYMVDGKMDIDIPPPAIIKPEALWTGK 613
Query: 546 QLFSMLLPPDFEYTFPSK---DVYISGGKLISAEG------SSWL--RDYE---GNLFQY 591
Q+FS+L+ P+ T P K D K ++ + WL R+ E G + +
Sbjct: 614 QVFSVLMRPN--KTSPVKVNLDAKCRDYKAVAGQAPDMDPNDGWLVVRNSEVMCGRMDKT 671
Query: 592 LIKR----------YRDKVLDFLYAAQEVLCE----WLSVRGMTVSLSDLYLASHSCSRK 637
+ RD D A L + +L+ RG ++ +SD+Y + K
Sbjct: 672 TVGSGKKDCIFYTILRDFGPDHAVLAMNRLAKLSARYLTNRGFSIGISDVYPS------K 725
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
L D+ + +A C+ L+V S K ++T E L E + S LS+
Sbjct: 726 SLEDQKLALVTKAYAECD--DLIVQ-----FKSGKLEKATGCNMEETL--ENKISGILSR 776
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH-SLAPLS 756
A + + SK NS L M K+GSKG+ + + Q +G Q S A ++
Sbjct: 777 VRQQAGEFCINTL--------SKWNSPLIMAKSGSKGSNINVAQMVTLVGQQMISGARVA 828
Query: 757 FRF-----PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F PH + A+ V NSF GL P E H+++ R+
Sbjct: 829 DGFQDRTLPH--------------FPKNARQPPSKGFVRNSFFGGLTPTEFLFHAISGRE 874
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEGT 861
G ++RRLM + DL T YD TVRN+ G IVQF + ++EG+
Sbjct: 875 GLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRNSSGG-IVQFQFGADKLDPVDMEGS 933
Query: 862 STP 864
+ P
Sbjct: 934 AVP 936
Score = 47.0 bits (110), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
D EK + V GAV +PRLG + T C +CG + C GHFG ++ H
Sbjct: 58 DVEKNRKPVPN-GAV----DPRLGTSSKTGRCETCG-EGLNNCNGHFGHVRLALPAFHIG 111
Query: 87 FLSDIAKLLNSICPKCKTI 105
+L + +L IC C +
Sbjct: 112 YLKLVIAILQEICKDCARV 130
Score = 43.1 bits (100), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 1066 FLLKTV----VKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHI-TSLWSA 1120
+L +T+ V G+ E + I+ +DK + + H + +G LR M+ + I T + +
Sbjct: 1267 YLKRTIPTIPVSGYPEATRA-IIQQDKGEHT-VHVEGYG---LRACMTTEGVIGTRVTTN 1321
Query: 1121 LMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLI 1180
+ +C+Q++ GI+A +ES +S+ NI P H+ +
Sbjct: 1322 SVVECNQVL--------------------GIEAARTTIANEIESVMSEM--NIDPRHMQL 1359
Query: 1181 VANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSV 1240
+A+ ++ GE +G+ GL+ R S A F AA D ++G
Sbjct: 1360 LADVMTYKGEILGITRFGLSKMR-----DSVLQLASFEKTPDHLFDAAAGMKKDAIEGVS 1414
Query: 1241 DALGWGKVPSVGTGG 1255
+ + G+ SVGTG
Sbjct: 1415 ECIIMGQTMSVGTGA 1429
>gi|397135826|gb|AFO11408.1| RNA polymerase I, partial [Tetrapisispora phaffii]
Length = 871
Score = 170 bits (431), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 158/606 (26%), Positives = 272/606 (44%), Gaps = 80/606 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 149 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 208
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 209 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 264
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L ++ Q
Sbjct: 265 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCSVPLQ 323
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 324 IVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIELDQLLNMLYWVPDWDGIIPTPAIIKPVP 383
Query: 541 VWSGKQLFSMLLPPDFEY--------TFPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 384 LWSGKQILSIAIPKGIHLQRFDEGTTMLSPKDNGMLIIDGQIIFGVVDKKTVGSSNGGLI 443
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + ++ ++ Q+V+ W G + + D + + M EI +
Sbjct: 444 HVVTREKGPQICAKMFGNIQKVVNFWFLHNGFSTGIGD------TIADGGTMKEITETIA 497
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
+A+ +++ ++ N L++AK + R S+E L++A A +
Sbjct: 498 DAKRKV--EEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 548
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++ +L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 549 NLNDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 599
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 600 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 646
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G G I Q + ++
Sbjct: 647 TGYIQRRLVKALEDIMVHYDSTTRNSLGN-VIQFVYGEDGID--AGHIEKQSIDTIGG-- 701
Query: 881 ISEAAY 886
S+AA+
Sbjct: 702 -SDAAF 706
>gi|325969566|ref|YP_004245758.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
gi|323708769|gb|ADY02256.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
Length = 891
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 149/572 (26%), Positives = 245/572 (42%), Gaps = 72/572 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ + E+G+P +A+ L + + WN E + + ++ + G
Sbjct: 330 GKRVDFSSRTVISPDPNLSINEVGVPIDIAKTLTVPMMVTEWNLELVRQLVLNGPEVWPG 389
Query: 378 ELYVCRKGGLVRIRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
YV G RR+D L G ++ R L +GDIVL NR PS+H S+
Sbjct: 390 ANYVIYPDG----RRVDLRYFRDRRELANKLAPGFVVERHLMNGDIVLFNRQPSLHRMSM 445
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+VLP ++ C P++ DFDGD ++ ++PQ AR E L+ + +I
Sbjct: 446 MGHIVRVLP-GRTFRLHLAVCPPYNADFDGDEMNLHVPQNEEARAEARTLMIVQNHIITP 504
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGK 545
+ G ++ QD +T +LL L++ + L + + + +W+GK
Sbjct: 505 RYGGPIIGARQDYITGGYLLTRKDNLINKELLTYLLAAANYDGEIDEPAIMHPKELWTGK 564
Query: 546 QLFSMLLPPDFEYTFPS------KDVY---------ISGGKLISA--EGSSWLRDYEGNL 588
Q+ SMLLP D + P+ K+ Y I G + + + S + +L
Sbjct: 565 QVISMLLPKDLNWVQPTAIKESCKEPYNCYTDEYIIIVNGYMATGVLDKKSIGAEQVDSL 624
Query: 589 FQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+ ++KRY D ++ + L +L +RG ++ + L + S
Sbjct: 625 WHVVVKRYGNDYARRWVDSILRALLRFLDLRGFSMGIDSLEMPRESY------------- 671
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
++L +S L + + R L+ ++ L V
Sbjct: 672 ------MELEKLYEESERKVLDYIQKYKEGRLEAEPGLTIDE----TLENDITIELSRVR 721
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+A +Y +KD M K G++G+++ + Q LG Q RF +
Sbjct: 722 EAAARVAERYINKDGEAYIMAKTGARGSIVNITQMVAMLGQQTIRGE---RFKRGFAGRT 778
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTL 824
GD AK + V N+F TGL PLE F H+ RD D A G +
Sbjct: 779 TAHFEPGDLGPIAKGF-----VRNNFKTGLTPLEFFFHAAGGRD-GLVDTAVRTAQSGYM 832
Query: 825 TRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
RRL+ ++D+ YDGTVRNA G+ I+Q Y
Sbjct: 833 QRRLINALQDIYVTYDGTVRNASGS-IIQTKY 863
Score = 48.5 bits (114), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 11 EVPSGILTGISLGISTDTEKEKLSVMEIGA-----------VSEVTNPRLGLPNPTNECS 59
E+P + I I + LSVMEI V + + RLG+ P C
Sbjct: 14 EIPLKTIKAIKFSILSPDIIRSLSVMEITTSETYDEAGRPMVGGLMDRRLGVVEPGARCE 73
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+CG K C GHFG I+ ++H + + LL + C +C I
Sbjct: 74 TCGNPPDK-CPGHFGRIELARPVIHVEYAKYVHDLLRTTCRECGRI 118
>gi|405974578|gb|EKC39212.1| DNA-directed RNA polymerase III subunit RPC1 [Crassostrea gigas]
Length = 1368
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 166/605 (27%), Positives = 262/605 (43%), Gaps = 94/605 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG- 377
GKR D R V++ DPN+++ ++ +P VA+ L ER+N N + + +L++ G
Sbjct: 356 GKRVDFSGRTVISPDPNMRIDQVAVPVHVAKVLTYPERVNKANIKLMR-----KLVKNGC 410
Query: 378 ------ELYVCRKGGLVRIRR-------IDALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
R + R R L+ GDI+ R L D DI+L NR PS+H S
Sbjct: 411 DTHPGANFIQQRDNNMKRYLRYGNREKIAKELKFGDIVERHLIDNDIILFNRQPSLHKLS 470
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
+ A KV+P N CC+PF+ DFDGD ++ ++PQ A+ E L+ +I
Sbjct: 471 IQAFYAKVMP-HRTFRFNECCCNPFNADFDGDEMNLHLPQTEEAKAEAITLMGSKSNIIT 529
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---QMFCPHRFLS-----PDIFKI 536
++G L++ QD +T +L+ + V L + QL + R L P I K
Sbjct: 530 PRNGEPLIAAIQDFITGGYLITQKDVFLDRARACQLIASMLSGRERTLKIDLPPPAIIKP 589
Query: 537 SKDSVWSGKQLFSMLLPPD----FEYTFPSKDVYISGGKLISAEGS-SWLRDYE------ 585
K +W+GKQ+FS+LL P+ +K SGG+ + S +R+ E
Sbjct: 590 IK--LWTGKQIFSVLLRPNKNSPVRANLWTKGKNYSGGEDLCINDSFVVIRNSELLCGAM 647
Query: 586 ----------GNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
N+F +++ + ++ D L + +LS RG ++ + D+ +
Sbjct: 648 DKGTLGGGSKNNIFYVILRDFGEQEAADALSRLARLCPAYLSHRGFSIGIGDVTPGA--- 704
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
GL +A++ L+ D + +D E + S E+ A
Sbjct: 705 -----------GLIKAKNN-----LLEDGYTKCDSFIRDLEEGKLQTQPGCSEEETLEAM 748
Query: 695 -LSQASV---DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
L + SV A K ++ K NS L M GSKG+ + + Q C+G Q
Sbjct: 749 ILRELSVIRDHAGKACLRELH--------KSNSPLNMAICGSKGSFINISQMIACVGQQ- 799
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
A R P+ A A+ + VENSF +GL P E F H++ R
Sbjct: 800 --AISGKRTPNGFEDRALPHFEKFSKDPAARGF-----VENSFYSGLTPTEFFFHTMAGR 852
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ + DLC+ YD TVR++ N IVQF Y + + E
Sbjct: 853 EGLVDTAVKTAETGYMQRRLVKSLEDLCSHYDLTVRSST-NDIVQFVYGGDSLDPASMEG 911
Query: 869 GDQPV 873
DQP+
Sbjct: 912 KDQPI 916
>gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit [Bothropolys multidentatus]
Length = 624
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 147/572 (25%), Positives = 252/572 (44%), Gaps = 78/572 (13%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ L E + +N +++ + + G Y+ R
Sbjct: 3 RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNNQYPGAKYIIRDN 62
Query: 386 GLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPI 435
G RID L+ G + R + DGD+V+ NR P++H S++ ++VLP
Sbjct: 63 G----ERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVLPW 118
Query: 436 SSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLG 495
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + +Q+I QS R ++ +
Sbjct: 119 STF-RMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQSNRPVMGIV 177
Query: 496 QDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLL 552
QD+LTA + + V L QM L MF P + P I K +W+GKQLFS+++
Sbjct: 178 QDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAILK--PKPLWTGKQLFSLII 235
Query: 553 P------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQYL 592
P PD E P K + K++ G L G+L +
Sbjct: 236 PGNVNCIRAHYSHPDDEDDSPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIV 295
Query: 593 IKRYRDKVLDFLY-AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA- 650
+ V Y Q V+ WL + G ++ + D + +I +++A
Sbjct: 296 MLELGWGVAGLFYWHIQMVINNWLLLEGHSIGIDDTIADPQTYI------DIQNSIKKAK 349
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
QD +++ N + + R ++E Q + L+ A
Sbjct: 350 QDVIE----VIEKAHNDELEPTPGNTLRQ------TFENQVNRILNDARDKT-------- 391
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNR 770
+ A K S+ N+ +M +G+KG + + Q +G Q+ R P
Sbjct: 392 GSSAEKSLSEFNNFKSMVVSGAKGXXINISQVIXXVGQQNVEGK---RIPFGFCKRTLPH 448
Query: 771 LRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRL 828
D ++ + VENS+L GL P E F H++ R+ G + RRL
Sbjct: 449 FIKNDYGPESRGF-----VENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRL 503
Query: 829 MFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ M + YDGT+RN+ G Q++Q Y +G
Sbjct: 504 IKAMESIMATYDGTIRNSVG-QLIQLRYGEDG 534
>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
Length = 1935
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 146/596 (24%), Positives = 262/596 (43%), Gaps = 98/596 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+T DPN+ + ++G+P +A + +E + +N +RL +
Sbjct: 315 VRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRG 374
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R G RID L+ G + R + DGDIV+ NR P++
Sbjct: 375 NSQYPGAKYIIRDNG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLR 430
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ V++LP S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + +
Sbjct: 431 KMSMMGHRVRILPWSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRM 489
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
++ QS R ++ + QD+LTA + V L ++ L MF + P I K
Sbjct: 490 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--P 547
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSKDVYISGGKLISAEGS-------- 578
+W+GKQ+FS+++P PD E + P K + K++ G
Sbjct: 548 RPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCK 607
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L G+L + Y+ Q V+ WL + G T+ + D S +
Sbjct: 608 KSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADS 661
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAA 694
+I +++A+ + +++ +H N L + ++ + + L+ + ++ +
Sbjct: 662 KTYQDIQNTIKKAKQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGS 719
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---S 751
+Q S+ + N+ +M +G+KG+ + + Q +G Q+
Sbjct: 720 SAQKSLSEY------------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGK 761
Query: 752 LAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHS 806
P F+ PH + Y P + VENS+L GL P E F H+
Sbjct: 762 RIPFGFKHRTLPHFIE----------------DDYGPESRGFVENSYLAGLTPTEFFFHA 805
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+ G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 806 MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 860
>gi|157741624|gb|ABV69517.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 987
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 163/632 (25%), Positives = 271/632 (42%), Gaps = 102/632 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKAFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G YV R+ G RID AL+ G + R L DGDI+L NR P
Sbjct: 322 PEAHPGARYVIRETG----ERIDLRYHKDTSQIALKTGWKVERHLMDGDIILFNRQPXXX 377
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
L +S +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 378 XXXXXXXXXXRLXLS--------VTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + + LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 490 RWTGKQVISMVLPPALNLVRIDGKEPQPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR-KILMD 641
+ + F AQ V+ WL G ++ + D + + K+ +D
Sbjct: 550 GSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKLEVD 609
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQAS 699
R+ + Q+ V +E +L G ++ ++E + SAAL+ A
Sbjct: 610 ------RKKAEVERITQMAV------------AEDLEALPGMNVRETFESKVSAALNGAR 651
Query: 700 VDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 652 DEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 703 GFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREG 748
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G I
Sbjct: 749 LIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD--GAHIEK 805
Query: 871 QPVGSLSACAISEAAYSALDQPISLLETSPLL 902
Q V A+S+AA+ + + L+E+ L+
Sbjct: 806 QRV---DVIAMSDAAFEKQFR-VDLMESKKLV 833
>gi|157741476|gb|ABV69443.1| RNA polymerase II largest subunit, partial [Verrucaria baldensis]
Length = 998
Score = 170 bits (431), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 150/596 (25%), Positives = 266/596 (44%), Gaps = 108/596 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A+ L E + WN ++L + ++
Sbjct: 261 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTLWNMDKLKQLVVNG 320
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G ++ R+ RID L+ G + R + DGD++L NR P
Sbjct: 321 PNNHPGARFIVRENN----ERIDLRYHKNTAEITLKTGWKVERHIKDGDVILFNRQPX-- 374
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 375 -----XXRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 428
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 429 IVSPQRNGPLMGIVQDTLCGIYKVCRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 486
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 487 RPRWTGKQMISMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVSDGQLMFGLFNKKSV 546
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 547 GTGSNGIIHTIYNEFGHEVAQA------FFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTV 600
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ ++ D + + + + +E +L G ++ ++E + S
Sbjct: 601 EK----------IKSEVDKKK-------AEVERITQSAVAEDLEALPGMNVRETFESKVS 643
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH-- 750
AAL+ A +A ++++ N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 644 AALNGARDEAGSATENSLKDI--------NNAITMARAGSKGSTINISQMTAIVGQQSVE 695
Query: 751 -SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHS 806
P F++ PH D + +K + VENS+L GL P E F H+
Sbjct: 696 GKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHA 741
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 742 MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 796
>gi|289596765|ref|YP_003483461.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
gi|289534552|gb|ADD08899.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
Length = 895
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 214/902 (23%), Positives = 366/902 (40%), Gaps = 158/902 (17%)
Query: 49 LGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK- 107
+G+ P C +CG K C GHFG I+ ++H F+ +I L++ C +C I+
Sbjct: 55 MGVIEPGLRCKTCGGK-VDECPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKLK 113
Query: 108 -----------ERQKGAGSSRKE--------------QPRVCKYCVRNPAQWYPRMRFKL 142
E K G+S E +P +C +C A+ K
Sbjct: 114 DDEIEIYKQKIEEAKKMGASPLELLFITKKIIDDASSRP-ICPHC---GAEQKKITLDKP 169
Query: 143 SSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYL 202
++ G+ EI E+L +++PD+ + + + + +P VL+ V +
Sbjct: 170 TTFREEGRKLTPKEIRERL----ERIPDEDLPLLGMNPE----TARPEWMVLTVLPVPPV 221
Query: 203 LKDVDPSIR-EEFILSKDAPFLKCFPVTPNNHRVTE-----VPHA--------FSHEKKL 248
+V P+I E S+D K + N R+ E P +
Sbjct: 222 --NVRPTITLETGERSEDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVTT 279
Query: 249 FFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSS 308
+FDN T + GR L LVQ R E R + N+
Sbjct: 280 YFDNQTSGIPPARHRSGR--PLKTLVQ--------------RLKGKEGRFRSNLS----- 318
Query: 309 GLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVC 368
GKR + R V++ +P + + E+G+P A L + + +N E++
Sbjct: 319 ----------GKRVNFSARTVISPEPFLSINEVGVPEAAARELTVPITVTEYNIEKMKEI 368
Query: 369 ISFRLLEKGELYVCRKGGLVRI--RRID-----------ALELGDIIYRPLTDGDIVLIN 415
+ KG+ Y+ ++R RRI L++G ++ R L DGD+VL N
Sbjct: 369 VRRGSNPKGDKYLPGANYVIRPDGRRIKITDRNAEDVSKKLDIGWVVERHLIDGDVVLFN 428
Query: 416 RPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
R PS+H S++ VKV+P + N C P++ DFDGD ++ ++ Q+ AR E L
Sbjct: 429 RQPSLHRMSMMGHLVKVMP-NRTFRFNLAVCPPYNADFDGDEMNLHVLQSEEARAEAKIL 487
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK 535
+ + + +++ + G ++ D +TA LL + + Q + + + L
Sbjct: 488 MLVQEHILSPRFGGPIIGGIHDHITAMFLLTHKNPKFTKEQAIHMLSYLDYDELPEPHKD 547
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPSK------------------DVY--ISGGKLISA 575
+ + + GK+LFS++LP D F SK D Y I GKL++
Sbjct: 548 ENGNEFYYGKELFSLILPKDLNMEFKSKICDPSVCNNKCVHEACPIDAYVVIRNGKLVAG 607
Query: 576 E-GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
+ + +G L + KR + +F+ + +S RG T + D + +
Sbjct: 608 TIDENAIGSMKGKLLDRIAKRGSKEAREFIDNMTRLAVGVISYRGFTSGIDDEDIPEEAI 667
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
I + EI +++ +++ + L+ S E L E R
Sbjct: 668 ---IQIHEII------KESIKKTDELIELYKQGLLQPAPGRSVE----ETLEMEIMR--V 712
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
L+ A +A K +A K+ +NS + M ++G++ ++L L Q + +G Q
Sbjct: 713 LAHARDEAGK--------IASKHLGLENSSVIMARSGARASMLNLSQMAGSIGQQSVRGQ 764
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R + + + R GD A+ + VE+S+ GL+P E F HS+ R+
Sbjct: 765 RLHRGYQDRTLPHFKR---GDLGALARGF-----VESSYKKGLSPTEYFFHSMGGRE-GL 815
Query: 815 SDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
D A G + RRL+ + DL DG V + GN +VQF Y +G PT G +
Sbjct: 816 VDTAVRTSRSGYMQRRLINALEDLKVIEDGKVVDTAGN-VVQFIYGEDGVD-PTRSSGGE 873
Query: 872 PV 873
V
Sbjct: 874 NV 875
>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Nasonia vitripennis]
Length = 1355
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 166/604 (27%), Positives = 260/604 (43%), Gaps = 92/604 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------S 370
GKR D R V++ DPN++++++G+P VA+ L ER+N N E + +
Sbjct: 330 GKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPERVNKCNIELMRRLVKNGPDVHPG 389
Query: 371 FRLLEKG---ELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+E G E R G R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 390 ANFIEIGKNKERRFLRYGN--RQKMAQDLQYGDIVERHLHDGDVVLFNRQPSLHKLSIMA 447
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
KVL + N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++
Sbjct: 448 HKAKVLE-NRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRN 506
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL------------QMFCPHRFLSPDIFK 535
G L++ QD +T +LL + L+ Q+ QL Q+ P P I K
Sbjct: 507 GELLIAATQDFITGGYLLTQKDTFLNKSQVSQLISCLLAGEDTTMQITLP----KPAILK 562
Query: 536 ISKDSVWSGKQLFSMLLPP-------------------DFEYTFPSKDVYISGGKLI--S 574
+ +W+GKQ+FS++L P + E V I +L+ S
Sbjct: 563 PA--IMWTGKQIFSVILRPNEKCPVKANLKTKGRAYTSNEELCINDSYVIIRNSQLLAGS 620
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDF-LYAAQEVLCEWLSVRGMTVSLSDLYLASHS 633
+ S+ + N+F L++ + + V ++ + +L RG ++ + D+ HS
Sbjct: 621 MDKSTLGSGAKQNIFYILLRDWGEDVAALVMWRLARIASYFLMNRGFSIGIGDV-TPGHS 679
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
R Q+L+ + + K +E R ++ L + S
Sbjct: 680 LLRA------------------KQELLNNGY------GKCTEYIRKMEAGKLPCQPGCSE 715
Query: 694 ALS-QASVDAFKHVFWD-IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS 751
S +A + V D + K NS L M +GSKG+ + + Q C+G Q
Sbjct: 716 EESLEAMILKELSVIRDHAGKVCLKELHPSNSPLVMALSGSKGSFINISQMIACVGQQ-- 773
Query: 752 LAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
A R P+ A AK + VENSF +GL P E F H++ R+
Sbjct: 774 -AISGHRVPNGFEDRALPHFEKYSKVPAAKGF-----VENSFYSGLTPTEFFFHTMGGRE 827
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ + DLC YD TVRN+ G+ IVQ Y + E
Sbjct: 828 GLVDTAVKTAETGYMQRRLVKSLEDLCLHYDLTVRNSTGD-IVQVLYGGDAMDPTYMEGK 886
Query: 870 DQPV 873
D PV
Sbjct: 887 DCPV 890
Score = 45.1 bits (105), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
RLG + N+CS+C K C GHFG++ + H + +L SIC KC +
Sbjct: 31 RLGTCSNANKCSTCN-KPLNECIGHFGYLDLELPVFHVGYFRSTIGILQSICKKCSQV 87
>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1645
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 170/663 (25%), Positives = 294/663 (44%), Gaps = 106/663 (15%)
Query: 254 TRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKD-----SAEVRQKKNIDISNSS 308
T +L K D R H++Q+ ++ + H+ D A R KK I S +
Sbjct: 273 TNNLIKRHDKRA---TAPHIIQEMCQLLQFHITTLFDNDIPGMPVASTRSKKPIK-SIRA 328
Query: 309 GLRW----IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER 364
L+ ++ ++GKR D R V+TGDPNI + IG+P +A L E +NS N+E
Sbjct: 329 RLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYES 388
Query: 365 LSVCISFRLLE-KGELYVCRKGG----LVRIRRIDALEL--GDIIYRPLTDGDIVLINRP 417
L + + G Y+ R+ G L +++ L+L G + R + DGD +L NR
Sbjct: 389 LRKKVEVGPHDWPGAKYIIREDGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQ 448
Query: 418 PSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVA 477
PS+H S++ K+LP S+ +N +P++ DFDGD ++ ++ Q+ R E+ L+
Sbjct: 449 PSLHKMSIMGHKAKILPYSTF-RLNLSVTTPYNADFDGDEMNLHLVQSHETRAEVKHLML 507
Query: 478 LDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIF 534
+ KQ+++ Q R ++ + QDSL A + L+ ++ L ++ P+ + P IF
Sbjct: 508 VPKQIVSPQGNRPVMGIVQDSLLAVSKFTKRDTFLTRDELMSLLIWIPYWDGKLPQPAIF 567
Query: 535 KISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSS--------WLRDYE- 585
++W+GKQ+ S+LL + + ++ G + + + +R E
Sbjct: 568 --FPKNLWTGKQVISVLLTFNQAQGITNINLIRDGSIKLEKDNLNCSVNDSRVIIRKNEH 625
Query: 586 --------------GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
G+L L +K DFL Q+V+ W G TVS SD+
Sbjct: 626 LSGIICKKTVGCSSGSLIHILWHEAGPEKCRDFLTTLQKVVNNWFLQVGFTVSCSDI--- 682
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDS---ESTRSLQGEHLSY 687
C ++++ L +++ Q+L++ + L ES + + L+
Sbjct: 683 ---CCSTTTLNKVSKILDKSKK--EVQKLVLQAQKGKLKCQPGKSLFESFEARVNKELND 737
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
+++S ++ +S++ N++L+M +GSKG+ + + Q C+G
Sbjct: 738 AREQSGSVVASSLNI------------------SNNILSMVNSGSKGSTINISQIIACVG 779
Query: 748 LQH---SLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNP 799
Q+ P F+ PH + Y P + V NS+L+GL P
Sbjct: 780 QQNVEGKRIPFGFKDRSLPHFIK----------------HDYGPESRGFVSNSYLSGLTP 823
Query: 800 LECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E F H++ R+ G + RRLM M D+ YD T RN G +I+QF Y
Sbjct: 824 QEMFFHAMGGREGIIDTACKTSETGYVQRRLMKAMEDVMVQYDRTARNGNG-EILQFLYG 882
Query: 858 IEG 860
+G
Sbjct: 883 EDG 885
Score = 49.7 bits (117), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGF 75
I+ +S+ T TE + V + G ++++ R+G +P + C++C D K C GHFG
Sbjct: 31 IIKRMSVCEITLTELYREGVPQTGGLNDL---RMGTTDPRHVCTTC-RMDLKYCPGHFGH 86
Query: 76 IKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
I + H F+ I K+L+S+C C +R +++
Sbjct: 87 IVLAKPMYHYGFMPTIIKILSSVCFNCSKLRLDKE 121
Score = 43.9 bits (102), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+++T++ +++ +GI+A + L + + IS G + HL ++ + ++ G
Sbjct: 1277 VEYTKTFSNDVSEIFNVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYL 1336
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + GL + + P V+ F + + AA VD L+G + + G++
Sbjct: 1337 MSITRHGL-----NRADRGPLVKCSFEETLETLLSAAAFSEVDPLRGVTENVVVGQLSPY 1391
Query: 1252 GTGGHFDII 1260
GTG FDI+
Sbjct: 1392 GTGC-FDIM 1399
>gi|149234447|ref|XP_001523103.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146453212|gb|EDK47468.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1450
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 155/598 (25%), Positives = 263/598 (43%), Gaps = 78/598 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N +L + I+ G
Sbjct: 372 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKRKLQQLIINGPDHHPG 431
Query: 378 ELYVCRKG--GLVRIRRID------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ G +R D +L++GD++ R + DGD+VL NR PS+H S+++
Sbjct: 432 ANYVQKQNEPGKRNLRFGDRHKLARSLQVGDLVERHIEDGDVVLFNRQPSLHRLSILSHY 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 492 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 550
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL-----SPDIFKISKDSVWSG 544
+++ QD +T ++L+ L + QL + P IFK +W+G
Sbjct: 551 PIIAATQDFITGSYLISHKDTFLDRASLVQLLSMMSDADIHFDIPPPAIFKPV--MLWTG 608
Query: 545 KQLFSMLLPPD----------------------FEYTFPSKDVY--ISGGKLISA--EGS 578
KQ+FS+L+ P+ F + D Y I G +++S + S
Sbjct: 609 KQVFSLLIKPNKQSKVIINLNAKNKTCHPAPKGFPPEMSTNDGYVVIRGSQILSGLMDKS 668
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRK 637
+ + ++F +++ Y LC +L RG ++ ++D+ A+ +K
Sbjct: 669 TLGDGKKDSVFYVILRDYGPHEAAAAMNRMAKLCARYLGNRGFSIGINDVTPATELRQKK 728
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
LM E Y L D ++ K T+ E + E + LS+
Sbjct: 729 ELMVEQAY-------------LKCDQLIDLFNRGK--LETQPGCNEEETLEAKIGGLLSK 773
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
+ ++ +L N+ L M GSKG+++ + Q +G Q
Sbjct: 774 VREEVGNECIRELDSL--------NAPLIMATCGSKGSIVNVSQMVAVVGQQ---IISGH 822
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R P + T +K + V NSF +GL+P E H+++ R+
Sbjct: 823 RVPDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFFSGLSPPEFLFHAISGREGLVDTA 877
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G ++RRLM + DL YD TVRN+ N IVQF+Y +G E +PV
Sbjct: 878 VKTAETGYMSRRLMKSLEDLSAQYDDTVRNS-SNGIVQFTYGGDGLDPYDMEGDAKPV 934
Score = 50.1 bits (118), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVT---NPRLGLPNPTNECSSCG 62
C GLE + I + + L +E G ++ +PR+G + ECS+C
Sbjct: 13 CISGLEFSALSADDIVAQSEVEVQTRDLYDLEKGRTAKAGGALDPRMGTSSNAQECSTCH 72
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+ +C+GHFG IK + H + I +L IC C +
Sbjct: 73 G-NLASCQGHFGHIKLALPVFHVGYFKAIITVLQCICKNCAAV 114
>gi|356541271|ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Glycine max]
Length = 1391
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 166/602 (27%), Positives = 264/602 (43%), Gaps = 91/602 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------S 370
GKR + R V++ DPN+K+ E+ IP +A L ER+ N E+L C+
Sbjct: 356 GKRVEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPG 415
Query: 371 FRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
R+L + + L R R D L +GDI+ R L DGDIVL NR PS+H S++
Sbjct: 416 ARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRA 475
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+++P + + N C+P++ DFDGD ++ ++PQ AR E L+ ++ L ++G
Sbjct: 476 RIMPWRT-LRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEI 534
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC--------PHRFLSPDIFKISKDSVW 542
L++ QD LT++ L+ + C P +P I K + +W
Sbjct: 535 LVASTQDFLTSSFLITRKDTFYDR---STFSLICSYIGDGMDPIDLPTPAIVKPVE--LW 589
Query: 543 SGKQLFSMLLPP-------------DFEYTFPSKD----------------VYISGGKLI 573
SGKQLFS++L P + YT K VY +LI
Sbjct: 590 SGKQLFSIILRPHANMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELI 649
Query: 574 SAE-GSSWLRD-YEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
S + G L + + LF L++ YR + ++ W+ G ++ + D+
Sbjct: 650 SGQVGKVTLGNGNKDGLFSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQ-- 707
Query: 631 SHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQ 690
++IL+++ + E C+ + L++ D+ T E +
Sbjct: 708 ----PKEILINKKDETISEGYRECDKHIEAFNKGKLELLAGCDAAQT---------LETR 754
Query: 691 RSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
+ L+ A K +Q L ++ NS L M + GSKG+ + + Q C+G Q
Sbjct: 755 ITGVLNGLRDTAGKVC---MQTLHWR-----NSPLIMSQCGSKGSSINISQMVACVG-QQ 805
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
S+ R P+ + T AK + V NSF +GL+ E F H++ R
Sbjct: 806 SVG--GRRTPNGFIDRSLPHFPRKSKTPAAKGF-----VANSFYSGLSATEFFFHTMGGR 858
Query: 811 DS---SFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGE 867
+ + AD G ++R+LM + DL YD TVRNA G IVQF Y +G P G
Sbjct: 859 EGLVDTAVKTAD-TGYMSRQLMKSLEDLFLHYDYTVRNA-GGSIVQFCYGDDGMD-PAGM 915
Query: 868 IG 869
G
Sbjct: 916 EG 917
Score = 45.1 bits (105), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PR+G N + C++C + C GH+G++ + + +LS I ++L IC C I
Sbjct: 65 DPRMGPANKSLVCATCDG-NFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCARI 123
Query: 106 ------RKERQKGAGSSRKEQ 120
RK+ K SS+K +
Sbjct: 124 LLDEDTRKKHLKKMRSSKKSE 144
Score = 44.7 bits (104), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDT-GKNILPEHLLIVANTLSATGE 1190
ID ++ ++I GI+A + + ++ + DT G NI H++++A+ ++ATG
Sbjct: 1251 IDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADMMTATGH 1310
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250
+G+N G++ K S + A F +A+ G D++ G +++ G
Sbjct: 1311 ILGINRFGISKMGK-----SVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPIQ 1365
Query: 1251 VGTG 1254
+GTG
Sbjct: 1366 IGTG 1369
>gi|157741504|gb|ABV69457.1| RNA polymerase II largest subunit, partial [Heteroplacidium
imbricatum]
Length = 999
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 148/589 (25%), Positives = 257/589 (43%), Gaps = 94/589 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL++G + R + DGD++L NR P
Sbjct: 322 PEMHPGARYIIREHN----ERIDLRYHKDTSQIALKVGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCVVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V LS ++ + ++ P + P +
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNITLWVPDWDGVIPQPAIVKPRP 489
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY---- 596
W+GKQ+ SM+LPP G+ + G S L +G L + +
Sbjct: 490 RWTGKQMISMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVADGQLMFGMFNKKSVGT 549
Query: 597 --------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDE 642
+ + F AQ + WL G ++ + D + + + +E
Sbjct: 550 GSNSVIHTIFNEFGHETAMAFFNGAQTAVNYWLLHNGFSIGIGDTVPDVGTVEK--IKNE 607
Query: 643 IFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASV 700
+ E + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 608 VDKKKAEVER---------------ITQSAVAEDLEALPGMNVRETFESKVSAALNGARD 652
Query: 701 DAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLS 756
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 653 EA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFG 703
Query: 757 FRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 704 FKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGREGL 749
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 750 IDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|11499472|ref|NP_070713.1| DNA-directed RNA polymerase subunit A' [Archaeoglobus fulgidus DSM
4304]
gi|2648656|gb|AAB89365.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Archaeoglobus
fulgidus DSM 4304]
Length = 867
Score = 170 bits (430), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 148/575 (25%), Positives = 266/575 (46%), Gaps = 75/575 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR + R V++ DP + + E+G+P ++AE L + + N + ++ R
Sbjct: 310 GKRVNFSARTVISPDPCLSINEVGVPREIAEELTVPIYVTPQNID-MAREFVLRSEHPKA 368
Query: 379 LYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ R G RIR I++ LE G I+ R L DGDIVL NR PS+H S++A V
Sbjct: 369 NYIVRPDGR-RIRVIESNKEELAEKLEPGWIVERQLMDGDIVLFNRQPSLHRMSIMAHYV 427
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VLP + +NP C P++ DFDGD ++ ++PQ++ A+ E L+A+ + +++ + G
Sbjct: 428 RVLPYKTF-RLNPAVCPPYNADFDGDEMNLHVPQSLEAQAEAKILMAVQEHILSPRFGGP 486
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSM 550
++ D ++ +LL + + +L S DI +I ++GK++FS
Sbjct: 487 IIGGIHDHISGLYLLTRGEKKFTREEAMEL-------LRSLDISEIPVKDEYTGKEIFSF 539
Query: 551 LLPPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWLRDYEGNLFQYL 592
+L PD F ++ D Y I GKL+ + ++G + +
Sbjct: 540 IL-PDITLEFKAEICQGCEECKGAECEYDAYVIIENGKLLKGTIDEKAVGAFKGIIIDEI 598
Query: 593 IKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
++Y ++ F+ ++ +S G TV + D + + + ++E+ L+EA+
Sbjct: 599 ARKYGKEMAKKFIDDMTQLAIRIISKLGFTVGIDDEDIPPEAAEQ---IEEV---LKEAE 652
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
+ +N L+ A + G + + E + L +A A K
Sbjct: 653 N-----------EVNRLIEAYRRGDLEPMPGRSIEETLEMRIMQVLGRARDRAGK----- 696
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWN 769
+A ++ DN+ + M +G++G++L L Q + C+G Q S+ + + +
Sbjct: 697 ---IAQRHLGMDNAAVIMAVSGARGSMLNLTQMAACIG-QQSVRGERISRGYTYTNRTLS 752
Query: 770 RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTR 826
+ GD A+ + V +S+ GL+P+E F H+ R+ D A G L R
Sbjct: 753 HFKPGDLGAEARGF-----VRSSYKKGLSPVEFFFHAAGGRE-GLVDTAVRTSQSGYLQR 806
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
R++ ++DL YDGTVR +VQF Y +G
Sbjct: 807 RMINALQDLKVEYDGTVREQTSGALVQFRYGEDGV 841
Score = 50.1 bits (118), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ + RLG+ +P C +CG K + C GHFG ++ ++H + IA+LLN C +C
Sbjct: 44 LMDTRLGVIDPGLRCKTCGGKAGE-CPGHFGHVELAAPVIHVGYAKMIARLLNGTCSECG 102
Query: 104 TI 105
I
Sbjct: 103 RI 104
>gi|157741554|gb|ABV69482.1| RNA polymerase II largest subunit, partial [Thelidium incavatum]
Length = 999
Score = 170 bits (430), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 157/592 (26%), Positives = 254/592 (42%), Gaps = 100/592 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L I R
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKNLI-IR 320
Query: 373 LLEK--GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSI 420
E G Y+ R+ RID AL+ G + R + DGDI+L NR P
Sbjct: 321 GPENHPGARYIIRENN----ERIDLRYHKDLKGIALKAGWKVERHIMDGDIILFNRQPX- 375
Query: 421 HPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDK 480
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 ------XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPL 428
Query: 481 QLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKIS 537
+++ Q L+ + QD+L + + V L + + ++ P P IFK
Sbjct: 429 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLPREAVMNIMLWVPDWDGVIPQPAIFK-- 486
Query: 538 KDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 487 PRPRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPVGDSGLFVADGQLMFGLFNKKS 546
Query: 597 -----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ + F AQ V+ WL G ++ + D + KI
Sbjct: 547 VGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDFGTVEKI- 604
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQ 697
F+ + + + + +E +L G ++ ++E + SAAL+
Sbjct: 605 ---------------KFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNG 649
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLA 753
A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 650 ARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRI 700
Query: 754 PLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F++ PH A D+ A P VENS+L GL P E F H++ R
Sbjct: 701 PFGFKYRTLPH----------FAKDDYSAA----PKGFVENSYLRGLTPTEFFFHAMAGR 746
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 747 EGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFVYGEDG 797
>gi|126178251|ref|YP_001046216.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|126178264|ref|YP_001046229.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|125861045|gb|ABN56234.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
gi|125861058|gb|ABN56247.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
Length = 882
Score = 170 bits (430), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 255/567 (44%), Gaps = 46/567 (8%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DPN+ + E+GIP +A + + R+ ++N E + + E+
Sbjct: 312 GKRVNFSARTVISPDPNLSIGEVGIPLAIANEMTLPIRVTTFNIEEMRQYV-LNGPERPT 370
Query: 377 -----GELYVCRKGGLVRIRRIDA--------LELGDIIYRPLTDGDIVLINRPPSIHPH 423
G Y R R+R DA +E G + R L D DIVL NR PS+H
Sbjct: 371 IRSPCGANYAIRPDNR-RMRLSDANLETVAEMIEPGWTVERQLKDNDIVLFNRQPSLHRM 429
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++A V V+ +NP C P++ DFDGD ++ +IPQ AR E LV++ ++
Sbjct: 430 SIMAHRVVVMD-GKTFRLNPAVCPPYNADFDGDEMNLHIPQTEEARAEAEILVSVSSNIL 488
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFL-SPDIFKISKDSVW 542
+ ++G ++ D ++ LL S ++ L P L PD + + +W
Sbjct: 489 SPRTGGPIIGGIHDHISGIFLLTHTVRHFSKEEVLYLTQHLPVEHLPEPDRMDENGNPLW 548
Query: 543 SGKQLFSMLLPPDFEYTFPSKDVY-ISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVL 601
+ KQ+FS++LP + F + K E +++R GNL I +
Sbjct: 549 TNKQVFSLVLPDNLNMVFQASSCQNCETCKREMCENDAFVRVVNGNLITGTIDKKGIGAF 608
Query: 602 DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMV 661
D ++L + GM + + + R I+++ +G+ + +D + +
Sbjct: 609 D-----GQILHRIIRQHGMKRAARFIDDVTKLSIRGIMLEGFSFGI-DDEDLTRTEYGQI 662
Query: 662 DSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN----LAYKY 717
D ++ +S D +G+ E L + V ++ +A ++
Sbjct: 663 DEVLDGAISDVDRRIKIYNEGQ---LEPMPGRTLEETLEMQIMQVLGKARDRTGEIAGRH 719
Query: 718 GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNT 777
DNS + M +G++G++L L Q + CLG Q R + + + R N
Sbjct: 720 LGMDNSAVVMAVSGARGSMLNLTQMAGCLGQQSVRGERIMRGYEDRTLPHFRR-----NE 774
Query: 778 ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRD 834
A+++ + NS+ +GL+P E F H++ R+ D A G L RR++ ++D
Sbjct: 775 RGAEAH---GFITNSYKSGLSPTEFFFHAIGGRE-GLVDTAVRTSQSGYLQRRMINALQD 830
Query: 835 LCTAYDGTVRNAYGNQIVQFSYNIEGT 861
L AYDGTVR G +I+QF Y +GT
Sbjct: 831 LKVAYDGTVRTT-GGRIIQFRYGEDGT 856
Score = 40.8 bits (94), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 49 LGLPNPTNECSSCGAKDRKA--CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC---- 102
LG+ +P C +C D+KA C GHFG I+ ++H + I KLL C C
Sbjct: 50 LGVIDPGLRCKTC---DQKAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCSRLL 106
Query: 103 -------KTIRKERQKGAGSSRKE----QPRVCKYC 127
K I E + AG E + RVC +C
Sbjct: 107 MTSEEVEKIIGPEDSELAGEIVSEKDIKKERVCPHC 142
>gi|389585038|dbj|GAB67769.1| DNA-directed RNA polymerase III largest subunit [Plasmodium
cynomolgi strain B]
Length = 1969
Score = 170 bits (430), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 159/615 (25%), Positives = 258/615 (41%), Gaps = 120/615 (19%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------- 369
GKR D R V++ DPNI + E+ IP +A RL E++N +N E+L I
Sbjct: 418 GKRVDFSSRTVISPDPNISIDEVVIPEIIAMRLTYPEKVNRYNIEKLKKLIKNGTNTWPG 477
Query: 370 SFRLLEKG-ELYVCRKGG---------LVRIRR------------------IDALELGDI 401
+ +++KG C +GG + ++R I+ L++GDI
Sbjct: 478 ANYIIKKGCNGRSCSRGGGFSSQGDSIIDVVKRGNPAINKISLKYANKKFVIENLQVGDI 537
Query: 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGY 461
+ R L +GDIVL NR PS+H S++ +V+ + N CSP++ DFDGD ++ +
Sbjct: 538 VERHLVNGDIVLFNRQPSLHRMSIMCHKARVMKYKTF-RFNECVCSPYNADFDGDEMNLH 596
Query: 462 IPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL--------- 512
+PQ AR E L+ + LI ++G +++L QD L+A++++ L
Sbjct: 597 VPQTEEARAEALYLMNVKHNLITPKNGEVMIALTQDFLSASYVITNKDTFLDRDSFCLLC 656
Query: 513 SHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPP-------------DFEYT 559
S+ ++ + P P I K +W+GKQL S+L+ P + EY+
Sbjct: 657 SYFSDAKVDIELP----VPAILK--PKELWTGKQLISVLIKPNRKENTIINFELKEREYS 710
Query: 560 FPSKDV-----------YISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKV-LDFLYAA 607
+ D+ + + + G L + LF YLI V L +
Sbjct: 711 TKNGDLKHMCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSYVALKIMNRF 770
Query: 608 QEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNF 667
++ + + +GMT+ + D+ DT ++ +
Sbjct: 771 SKLTSRYFTNKGMTIGIDDV---------------------TPSDT------LIQKKKDL 803
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK----YGSKDNS 723
L + + + L + Q L + K++ D++N A K Y N
Sbjct: 804 LQAGYEKVNKEILLYNEKKMQIQPGCTLEETLEIKVKNILDDLRNDAGKTCNQYLDHLNK 863
Query: 724 LLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY 783
L MF +G+KG L+ + Q C+G Q+ + NR N C S
Sbjct: 864 PLIMFNSGAKGALINIAQMIACVGQQNVTG-------QRIQNGFINRTLPHFNIHCKDSE 916
Query: 784 IPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDG 841
V+NSF TGLNP E F H+++ R+ G + RRLM + DL YD
Sbjct: 917 -SRGFVQNSFYTGLNPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDY 975
Query: 842 TVRNAYGNQIVQFSY 856
+VR+ QIVQF Y
Sbjct: 976 SVRSC-DKQIVQFIY 989
>gi|395330745|gb|EJF63128.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1404
Score = 169 bits (429), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 175/687 (25%), Positives = 299/687 (43%), Gaps = 104/687 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LEKG 377
GKR D R V++ DPN+++ E+ +P +VA+ L ER+ + N +RL + + G
Sbjct: 351 GKRVDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTAHNIDRLKKAVRNGCDVHPG 410
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV R D L +GDI+ R + DGDI L NR PS+H S++
Sbjct: 411 ANYVTAGSNGFKKYLKFGNRTAIADGLRVGDIVERHVIDGDIALFNRQPSLHKLSIMCHR 470
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
+KV P S +N C P++ DFDGD ++ ++PQ AR E EL+++ L+ ++G
Sbjct: 471 IKVRPWRSF-RLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGE 529
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ---------LQMFCPHRFLSPDIFKISKDS 540
+++ QD +TA+ LL Q Q LQ+ P P I++ +
Sbjct: 530 PVIAAIQDFITASFLLSRRDTFFDRRQFTQICSYFGDADLQIDIP----PPTIWRPVR-- 583
Query: 541 VWSGKQLFSMLLPPDFEYTF------------------------PSKDVYISGGKL--IS 574
+W+GKQ+F++L+ P+ + P+ D+ + G L ++
Sbjct: 584 LWTGKQIFNVLMRPNRKSRVFVNVESKCNKEEKADTKCYPWIGKPAPDLSPNDGWLVIVN 643
Query: 575 AEGSSWLRD-------YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSD 626
+E + D + ++F +++ Y LC +L+ G ++ ++D
Sbjct: 644 SEIMCGVMDKATVGSGKKKSVFGVIMRDYGPHEAAAAMNRVAKLCARYLANFGFSLGIND 703
Query: 627 LYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLS 686
+ +K M E Y C ++L++ + L + + ++L+ E
Sbjct: 704 VIPGPVLSDKKDSMVEAAYA------AC--EKLIIRAKKGLLENKPGCDQEQTLEAE--- 752
Query: 687 YEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCL 746
+S+ D V ++ + K S+ N+ L M GSKG+++ + Q C+
Sbjct: 753 --------ISKVLSD----VRGNVGEICMKELSRHNAPLIMATCGSKGSVINVSQMVACV 800
Query: 747 GLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHS 806
G Q +A R P + +K + V NSF TGL P E H+
Sbjct: 801 G-QQIIA--GHRVPDGFQDRSLPHFPKKSRDPPSKGF-----VRNSFYTGLTPTEFLFHA 852
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
++ R+ G + RRLM + DL T YD +VRNA G +VQF Y +G
Sbjct: 853 ISGREGLVDTAVKTAETGYMQRRLMKALEDLVTHYDSSVRNAVGG-VVQFRYGDDGLDPA 911
Query: 865 TGEIGDQPV----GSLSACAISEAAYSALDQPISLLE--TSPLLNLKNVLECGSKK-SNA 917
E QPV + AC+++ + L P +++ L + EC + +
Sbjct: 912 CLEGDAQPVEYERAWIHACSVAPRSTRGL-LPFEIMDHVDRALATRRFTSECTAAYIATI 970
Query: 918 DQTMSLFLSNKLGKRR--HGFEYGALE 942
+ +S ++ KLG+ R HG + ALE
Sbjct: 971 RKFISENIAQKLGEVRKAHGM-FEALE 996
>gi|157741564|gb|ABV69487.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 153/597 (25%), Positives = 268/597 (44%), Gaps = 110/597 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL G + R + DGD++L NR P
Sbjct: 322 PQMHPGARYIIRENN----ERIDLRYHKNTADIALRTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V L+ ++ + ++ P P IFK
Sbjct: 430 IVSPQRNAPLMGIVQDTLCGIYKICRRDVFLAREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLP--------------PDFEYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LP P E P+ D ++++ G+L+
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKSSQPPLERFAPAGDSGLFVADGQLMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVVNYWLLHNGFSIGIGD------TV 595
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+++I Y + + + + + + + +E +L G ++ ++E + S
Sbjct: 596 PDVGTVEKIKYEVDKKK-----------AEVERITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ + ++ YD TVR++ GN I+QF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEITVKYDTTVRDSRGN-ILQFIYGEDG 797
>gi|123979354|gb|ABM81502.1| RNA polymerase II largest subunit [Parmeliella sp. AFTOL 334]
Length = 982
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 151/577 (26%), Positives = 259/577 (44%), Gaps = 78/577 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N ++L + E
Sbjct: 255 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEH 314
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD H S+
Sbjct: 315 PGAKYVIRDSG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFXXXXXXXXXHKESM 370
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ +L + +++
Sbjct: 371 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSP 429
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V LS Q+ + ++ P + P + W+G
Sbjct: 430 QRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGILPQPAILKPRPKWTG 489
Query: 545 KQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISA--EGSSWLRDYEGNLFQYLI 593
KQ+ S+++P E P D + +SGGKL+ S G +
Sbjct: 490 KQIISLVIPSGLNLNRAGGEGFSPVNDDGLLVSGGKLMYGLLNKKSVGATSSGIIHIIFN 549
Query: 594 KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
++ + + F AQ V+ WL G ++ + D ++ +++ +D
Sbjct: 550 EKGPEAAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNT-------------IQQIEDA 596
Query: 654 CNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQ 711
N Q+ V SA ++E L G ++ ++E + S AL++A DA ++
Sbjct: 597 VNKQKEDV---AEITRSATENE-LEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLK 652
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHELSC 765
+L N+ M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 653 DL--------NNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH---- 700
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GT 823
D + ++ + VENS+L GL P E F H++ R+ + G
Sbjct: 701 -----FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVETAETGY 750
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 751 IQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 786
>gi|367041111|ref|XP_003650936.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
gi|346998197|gb|AEO64600.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
Length = 1547
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 165/600 (27%), Positives = 261/600 (43%), Gaps = 88/600 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ ++++ +P VA+ L ER+N N E+L I+ + G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPHIWPG 429
Query: 378 ELYVCRKGGL----------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+ +K G +R R D LE GD++ R L D DIVL NR PS+H S+++
Sbjct: 430 AQGIIKKDGSKYNLKIGKESLRERHADNLEFGDVVERHLEDDDIVLFNRQPSLHKLSIMS 489
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
VKV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + LI ++
Sbjct: 490 HLVKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLITPKN 548
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL--QMFCPHRFLS-PDIFKISKDSVWSG 544
G +++ QD +TAA LL + QM +L P I ++W+G
Sbjct: 549 GEPIIAATQDFITAAFLLSSKDRFFDRTTFTYICTQMLLGDTYLELPPPAIIKPRALWTG 608
Query: 545 KQLFSMLLPPDFE-----------YTFPSK------DVYISGGKLISAEGS--------S 579
KQ+F++++ P+ E F K D+ I L+ S
Sbjct: 609 KQIFNVMMRPNKESPVLVNLDAKNKAFQKKQDGEIPDMDIDDAFLVVRNSEVMCGRMDKS 668
Query: 580 WLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEW----LSVRGMTVSLSDLYLASHSCS 635
+ + N Y+I RD ++ AA L + L++RG ++ + D++ + +
Sbjct: 669 TVGGGKKNSVFYVI--LRDFGPEYAAAAMNRLAKLSARTLTLRGFSIGVGDVWPSDSLTA 726
Query: 636 RKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAAL 695
K + E +A C+ L+ L A +L E S L
Sbjct: 727 HKASLVE------DAYKKCD--DLIETYRQGKLEKAPGCNLEETL-------ENIISGIL 771
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPL 755
S+ A + + NL SK+N+ L M K+GSKG+ + + Q C+G Q
Sbjct: 772 SKVRQQAGNYC---VDNL-----SKNNAPLIMAKSGSKGSEINVAQMVACVGQQIISGK- 822
Query: 756 SFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
R P + +K + V NSF TGL P E H+++ R+
Sbjct: 823 --RVPDGFQDRSLPHFHKNARQPPSKGF-----VRNSFYTGLVPTEFLFHAISGREGLVD 875
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEGTSTPT 865
G ++RRLM + DL YD TVR + G IVQF Y ++EG + P
Sbjct: 876 TAVKTAETGYMSRRLMKSLEDLSAQYDDTVRTSEGG-IVQFQYGADRLDPVDMEGDAKPV 934
Score = 46.6 bits (109), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 46 NPRLGL--PNPTNECSSC--GAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
+PRLG N N+CS+C G ++ C GHFG ++ P + H +L I L +IC
Sbjct: 64 DPRLGTSSTNRENKCSTCHLGLQE---CPGHFGHVRLPLPVFHIGYLKYIQATLQNICKD 120
Query: 102 CKTI 105
C +
Sbjct: 121 CARV 124
>gi|321468709|gb|EFX79693.1| hypothetical protein DAPPUDRAFT_244672 [Daphnia pulex]
Length = 920
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 223/945 (23%), Positives = 392/945 (41%), Gaps = 190/945 (20%)
Query: 20 ISLGISTDTEKEKLSVMEIGAV------------SEVTNPRLGLPNPTNECSSCGAKDRK 67
+ LGI + E ++SV E G + + +PR G+ +C +C +
Sbjct: 57 VQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQGVVIRKAKCQTCDGTINE 116
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQP------ 121
C GHFG I + H +N PK K I K+QP
Sbjct: 117 -CPGHFGHINLAKPVYH----------VNPNNPKFKEIL--------VKSKDQPLKCMAH 157
Query: 122 --------RVCKYCVRNPAQWYPRMR----FKLSSK----DLSGKTAIIVEIDEKLSKKN 165
+C+ ++ P++R FK++ + D + IV E++ +
Sbjct: 158 VYDLCKGINICEVGNGGCGRYLPKIRRLKGFKINGEWKHVDEDSQEKKIVLTAERVWEIF 217
Query: 166 KKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLKC 225
K++ D+ + D + +P+ +++C V I + I D
Sbjct: 218 KRISDEDCAILGMDPKY----ARPDWMIVTCLPVPPPAVRPAQIIGMDQI-ENDLTMKLA 272
Query: 226 FPVTPNNHRVTEVPHA--FSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKL 283
V NN + V S + K+ H+ M+D + S L+ S L
Sbjct: 273 DIVRANNKLLGAVQSGEILSGKTKML----QLHIASMMDSK------STLLPAYYHESTL 322
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
S KD E R + I+ ++GKR D R V+T DPN+++ ++GI
Sbjct: 323 --PTQSIKDRLEGRDGR------------IRGNLMGKRVDFAARTVITPDPNLRIDQVGI 368
Query: 344 PCQVAERLQISERLNSWNWERLSVCISFRLLEKG-------ELYVCRKGGLVRIRRID-- 394
P +A+ + ER+ +N E++ L+++G + + +K G RID
Sbjct: 369 PRSIAQNMTFPERVAPFNIEKMQ-----ELVQRGNSQYPGAKFCIIKKNG----DRIDLR 419
Query: 395 --------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCC 446
LE GDI+ R + DGD+V++NR PS+ ++ VKVLP S+ +NP
Sbjct: 420 FPSKSPDLRLECGDIVERHICDGDLVVLNRQPSLRKEGVMGHRVKVLPCSTFC-LNPSVA 478
Query: 447 SPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM 506
+ ++ +FDGD ++ ++PQ++ R E+ L+ + +I Q+ + ++ + QD+L A+ L
Sbjct: 479 TAYNANFDGDEMNLHVPQSMETRSEVESLLVSSRLIITPQASKPVMGIVQDTLVGAYKLT 538
Query: 507 EDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP---------- 553
+ V L QM L MF P + P I K +W+ + S+++P
Sbjct: 539 KRDVFLEKEQMMNLLMFLPTWDGKMPKPAILK--PRPLWTA--VHSIIIPGNVNMMRTHS 594
Query: 554 --PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDKVLDF 603
PD E P K V I G+L+ L +L + +V
Sbjct: 595 THPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGR 654
Query: 604 LYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVD 662
Y Q V+ WL G ++ + D +C + + + +E + +++
Sbjct: 655 FYGNIQTVINNWLLYEGHSIGIEDTLA---NCQTYMGIQDTIQNAKE-----DVIEVIER 706
Query: 663 SHMNFLMSAKDSESTRSLQGE--HLSYE-KQRSAALSQASVDAFKHVFWDIQNLAYKYGS 719
SH + L + ++ + + + Y+ +Q+++AL++ S+ +
Sbjct: 707 SHNDELEPTPGNTLRQTFENQVNRIIYDAQQQASALAKNSLTEY---------------- 750
Query: 720 KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAWNRLRA 773
N+L AM AGS G+ + Q C+G Q+ P FR PH +
Sbjct: 751 --NNLKAMAVAGSSGSSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHFIK--------- 799
Query: 774 GDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPGT-LTRRLMFFM 832
DN ++ + VENS+LTGL P E + H++ R+ + T + R+L+ M
Sbjct: 800 DDNGPESRGF-----VENSYLTGLTPCEFYFHAMAGRELLIYETRIKSETGIIRQLVKGM 854
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
+ YDGTVRN+ G +++QFSY +G + + E+ P +LS
Sbjct: 855 ESVMVHYDGTVRNSAG-RLLQFSYGEDGLAAESVELQKMPTVNLS 898
>gi|157741584|gb|ABV69497.1| RNA polymerase II largest subunit, partial [Verrucaria hydrela]
Length = 999
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 153/591 (25%), Positives = 254/591 (42%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNKERLKKFVTNG 321
Query: 373 L-LEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ G RID L G + R + DGD++L NR P
Sbjct: 322 PDNHPGARYIVREQG----ERIDLRFHKDPKSITLLTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS + + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGLFVADGLLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + +
Sbjct: 548 GTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDTVPDVGTVEK---- 603
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 604 -------------IKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|157741500|gb|ABV69455.1| RNA polymerase II largest subunit, partial [Endocarpon pusillum]
Length = 999
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 166/639 (25%), Positives = 281/639 (43%), Gaps = 116/639 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 488 RPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ W G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWFLHNGFSIGIGDT-VPDRGT 600
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
KI + + ++ V+ + + +E +L G ++ ++E + S
Sbjct: 601 VEKI------------KSEVDKKKAEVER----ITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD- 799
Query: 864 PTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+ A+ L + + L+E L+
Sbjct: 800 -GAHIESQRV---DVIAMSDGAFEKLFR-VDLMEPKKLV 833
>gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit [Scutigerella sp. Scu3]
Length = 624
Score = 169 bits (429), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 148/579 (25%), Positives = 256/579 (44%), Gaps = 92/579 (15%)
Query: 327 RMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKG 385
R V+T DPN+++ ++G+P +A+ + E + +N+E L + + G Y+ R
Sbjct: 3 RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFEXLXXLVXRGNSQYPGAKYIIRXN 62
Query: 386 GLVRIRRIDA------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVV 439
G R L++G + R + DGD+++ NR P++H S++ +VLP S+
Sbjct: 63 GERXDLRFHPKXSDLHLQIGYKVERHVRDGDVIVFNRQPTLHKMSMMGHHXRVLPWSTF- 121
Query: 440 TINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSL 499
+N +P++ DFDGD ++ ++PQ+ R E+ EL + +Q+I QS R ++ + QD+L
Sbjct: 122 RMNLSVTTPYNADFDGDEMNLHVPQSNETRAEVEELAIVPRQIITPQSNRPVMGIVQDTL 181
Query: 500 TAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSMLLP--- 553
TA + + V L QM L MF P + P I K W+GKQ+FS+++P
Sbjct: 182 TAVRKMTKRDVFLDKDQMMNLLMFLPTWNGKVPQPCILKPKPQ--WTGKQIFSLIIPGNV 239
Query: 554 ---------PDFEYTFPSK-------DVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRY 596
PD E P K V + G LIS L G+L ++
Sbjct: 240 NCIRTHSTHPDEEDDGPYKWISPGDTKVLVEHGDLISGILCKKTLGTSAGSLLHIVVLEL 299
Query: 597 RDKVLDFLY-AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA-QDTC 654
+ + Y Q V+ WL + G ++ + D + +I +++A QD
Sbjct: 300 GFETAGYFYWHIQTVVNNWLLLEGHSIGMCDTIADPQTYV------DIQNSIKKAKQDVI 353
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVFWDIQ 711
+++ +H + L + ++ + + L+ + ++ +Q S+ F
Sbjct: 354 ---EVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEF-------- 402
Query: 712 NLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSC 765
N+ AM +G+KG+ + + Q C+G Q+ P FR PH +
Sbjct: 403 ----------NNFKAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIK- 451
Query: 766 AAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
Y P + VENS+L GL P E F H++ R+
Sbjct: 452 ---------------DDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 496
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + +YDGT RN+ Q++Q Y +G
Sbjct: 497 GYIQRRLIKAMESVMVSYDGTCRNSVC-QLIQLRYGEDG 534
>gi|336476453|ref|YP_004615594.1| DNA-directed RNA polymerase subunit A' [Methanosalsum zhilinae DSM
4017]
gi|335929834|gb|AEH60375.1| DNA-directed RNA polymerase subunit A' [Methanosalsum zhilinae DSM
4017]
Length = 880
Score = 169 bits (429), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 153/582 (26%), Positives = 257/582 (44%), Gaps = 77/582 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-FRLLEKG 377
GKR + R VV+ DPN+ + E+GIP ++A+ + I ++ N E L ++ + + G
Sbjct: 315 GKRVNFSARTVVSPDPNLSINEVGIPFEIAKHMTIPLKVIPRNMEILRKYVANGKTIYPG 374
Query: 378 ELYVCRKGGL-VRIRRIDA------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R G V+I +A LE+G + R L DGDIV+ NR PS+H S++A TV
Sbjct: 375 ANYVIRGDGRRVKITENNAEEIAEKLEVGWTVERQLIDGDIVIFNRQPSLHKMSIMAHTV 434
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP + +NP C P++ DFDGD ++ ++ Q A E L+ + + +++ + G
Sbjct: 435 KVLPYKT-FRLNPSVCPPYNADFDGDEMNLHVLQNYEAIAEAKILMQVQENILSPRFGGP 493
Query: 491 LLSLGQDSLTAAHLLMEDSVLLS-HLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFS 549
+ D ++ LL + ++ H ++ L+ P + W+GKQ+FS
Sbjct: 494 FIGGIHDHISGMFLLTRNEKQINKHDALELLRKSEVRSLPEPAGSGEGGEPYWNGKQIFS 553
Query: 550 MLLPPDFEYTFPSK---------------DVYI---SGGKLISAEGSSWLRDYEGNLFQY 591
+LP + FP++ D Y+ +G LI + ++G +
Sbjct: 554 QILPEGLDLEFPAEVCMKCDVCKKSECEHDAYVVIKNGELLIGTIDERAIGAFKGIVVDK 613
Query: 592 LIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++K Y + F+ ++ + G++ +SD + +EA
Sbjct: 614 IVKEYGTTRGAQFIDDVTKLAIRGIMRTGLSFGISDEDIP-----------------KEA 656
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE------HLSYEKQRSAALSQASVDAFK 704
Q + + + L+ A +++ G LS ++ A QA
Sbjct: 657 QVQITRSLITAEEEVGKLIQAYEAKELDPFPGRTLDETIELSIMQKLGKARDQAG----- 711
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
N+A Y +NS + M ++G++G++L L Q + C+G Q A R S
Sbjct: 712 -------NIAGNYLGLENSAVIMARSGARGSMLNLTQMAACVGQQ---AVRGERIRRGYS 761
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLP 821
GD A ++ S S+ +GLNP E F H++ R+ D A
Sbjct: 762 GRTLPHFDKGDLGAHAHGFVKS-----SYKSGLNPTEYFFHAIGGRE-GLVDTAVRTSQS 815
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
G L RRL+ ++DL YD TVR G IVQF Y +G +
Sbjct: 816 GYLQRRLVNALQDLEVQYDRTVRETRG-VIVQFKYGEDGIDS 856
Score = 48.5 bits (114), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
RLG+ +P +C SCG + + C GHFG I+ ++H F I K+L S C KC
Sbjct: 53 RLGVIDPGLKCKSCGGRAGE-CPGHFGHIELVAPVIHIGFNKTIRKILRSTCRKC 106
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 169 bits (429), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 151/591 (25%), Positives = 267/591 (45%), Gaps = 90/591 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ L ++G+P +A + E + +N + L+ R
Sbjct: 291 IRGNLMGKRVDFSARTVITPDPNLMLDQLGVPWSIALNMTYPETVTPYNIDELT-----R 345
Query: 373 LLEKGE---------LYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVL 413
L+E G Y+ R+ G +R+D LE G + R + + D+VL
Sbjct: 346 LVENGPHPPPGETGAKYIIREDG----QRLDLRFLKKASEKKLEFGYRVERHMKNDDVVL 401
Query: 414 INRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELT 473
NR PS+H S++ V+++P S+ +N P++ DFDGD ++ ++PQ+ R E+
Sbjct: 402 FNRQPSLHKMSIMGHRVRIMPYSTF-RMNISVTPPYNADFDGDEMNMHLPQSYETRAEVA 460
Query: 474 ELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLS 530
EL+ + K +++ Q+ + ++++ QD+L + + + M+ + +
Sbjct: 461 ELMMVPKMIVSPQANKPVMAIVQDTLLGCRKMTSRETFIKKDVFMNIIMWLENWDGKVPK 520
Query: 531 PDIFKISKDSVWSGKQLFSMLLP--------------PDFEYTFPSKDVYISGGKLISAE 576
P I K + +W+GKQ+ SM+LP D +++ V I G+LI+
Sbjct: 521 PAILK--PEPLWTGKQVLSMMLPHINLIRTSSWARDADDLDFSVDDTGVRIERGELITGT 578
Query: 577 -GSSWLRDYEGNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
+ G L + + + + Q ++ WL G T + D +A
Sbjct: 579 LCKKTMGSGGGGLIHVTWEEWGPTAARNLVSEVQRLVNYWLLHHGFTCGIIDT-IADDGT 637
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK-DSESTRSLQGEHLSYEKQRSA 693
R I DT + V + + + + +S+ ++Q S+E++ +
Sbjct: 638 MRTI------------NDTITKAKSDVKAVIKLAQNGELESQPGMTMQ---QSFEQKVNQ 682
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSL 752
L++A DA A + KD N++ M +AGSKG+ L + Q C+G Q+
Sbjct: 683 ILNKARDDA---------GTAAQVSLKDSNNVKMMVQAGSKGSFLNISQMCACVGQQNVE 733
Query: 753 APLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
R P+ + D ++ + VENS+L GL P E F H++ R+
Sbjct: 734 GK---RIPYGFVDRSLPHFSKDDFGPESRGF-----VENSYLRGLTPQEFFFHAMGGRE- 784
Query: 813 SFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D A G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 785 GLIDTAVKTSETGYIQRRLVKAMEDVIVKYDGTVRNSVGD-VIQFLYGEDG 834
>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora
passalidarum NRRL Y-27907]
Length = 1445
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 158/602 (26%), Positives = 270/602 (44%), Gaps = 86/602 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N+++L I + + G
Sbjct: 367 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNFKKLQKLIRAGPDVHPG 426
Query: 378 ELYVCRKGGLVRI------RRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++ L + R I A L +GD++ R + DGD+VL NR PS+H S+++
Sbjct: 427 ANYIMKQNELAKRNLRFGNREILAKNLRIGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 486
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 487 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 545
Query: 490 NLLSLGQDSLTAAHLLM-EDSV--------LLSHLQMQQLQMFCPHRFLSPDIFKISKDS 540
+++ QD +T ++L+ +DS LLS + +Q P P IFK
Sbjct: 546 PIIAATQDFITGSYLISHKDSFFDRASFVQLLSMMSDADVQFDLP----PPTIFKPV--M 599
Query: 541 VWSGKQLFSMLLPPDFE-------------YTFPSKD-----------VYISGGKLISA- 575
+W+GKQ+FS+L+ P+ + + P+K V I G +++S
Sbjct: 600 LWTGKQVFSLLIKPNKKSNVIINLDAKNKTFIPPAKGLPSEMSPNDGFVIIRGSQILSGL 659
Query: 576 -EGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHS 633
+ S+ + ++F +++ Y + LC +L RG ++ ++D+ +
Sbjct: 660 MDKSTLGDGKKHSVFYTILRDYGPQEAASAMNRMAKLCARYLGNRGFSIGINDVTPETKL 719
Query: 634 CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSA 693
+K LM E Y L D ++ K T+ E + E +
Sbjct: 720 KQKKELMVEQAY-------------LKCDELIDLYNRGK--LETQPGCNEEQTLEAKIGG 764
Query: 694 ALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA 753
LS+ + + ++ ++ N+ L M GSKG+ L + Q +G Q
Sbjct: 765 LLSKVREEVGEECIRELDSM--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---I 813
Query: 754 PLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
R P + T +K + V NSF +GL P E H+++ R+
Sbjct: 814 ISGHRVPDGFQDRSLPHFTKNSKTPQSKGF-----VRNSFYSGLTPPEFLFHAISGREGL 868
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
G ++RRLM + DL YD TVRN+ N IVQF+Y +G E +
Sbjct: 869 VDTAVKTAETGYMSRRLMKSLEDLSAQYDNTVRNS-SNGIVQFTYGGDGLDPYDMEGDAK 927
Query: 872 PV 873
PV
Sbjct: 928 PV 929
Score = 48.9 bits (115), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVT---NPRLGLPNPTNECSSCG 62
C +GLE + I + + L +E G +V + R+G+ + +ECS+C
Sbjct: 12 CIKGLEFSALSAKDIVAQSEVEVQTRDLYDLEKGRTPKVQGALDTRMGISSNASECSTCH 71
Query: 63 AKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ 110
+ +C GHFG I+ + H + I ++L IC C + + Q
Sbjct: 72 G-NLASCHGHFGHIRLALPVFHVGYFKSIIQVLQCICKNCSAVLLDEQ 118
>gi|254169021|ref|ZP_04875859.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
gi|197621991|gb|EDY34568.1| DNA-directed RNA polymerase subunit A' [Aciduliprofundum boonei
T469]
Length = 895
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 214/902 (23%), Positives = 365/902 (40%), Gaps = 158/902 (17%)
Query: 49 LGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK- 107
+G+ P C +CG K C GHFG I+ ++H F+ +I L++ C +C I+
Sbjct: 55 MGVIEPGLRCKTCGGK-VDECPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKLK 113
Query: 108 -----------ERQKGAGSSRKE--------------QPRVCKYCVRNPAQWYPRMRFKL 142
E K G+S E +P +C +C A+ K
Sbjct: 114 DDEIEIYKQKIEEAKKMGASPLELLFITKKIIDDASSRP-ICPHC---GAEQKKITLDKP 169
Query: 143 SSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYL 202
++ G+ EI E+L +++PD+ + + + + +P VL+ V +
Sbjct: 170 TTFREEGRKLTPKEIRERL----ERIPDEDLPLLGMNPE----TARPEWMVLTVLPVPPV 221
Query: 203 LKDVDPSIR-EEFILSKDAPFLKCFPVTPNNHRVTE-----VPHA--------FSHEKKL 248
+V P+I E S+D K + N R+ E P +
Sbjct: 222 --NVRPTITLETGERSEDDLTHKLVDIIRINQRLRENRDSGAPQLIIEDLWELLQYHVTT 279
Query: 249 FFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDISNSS 308
+FDN T + GR L LVQ R E R + N+
Sbjct: 280 YFDNQTSGIPPARHRSGR--PLKTLVQ--------------RLKGKEGRFRSNLS----- 318
Query: 309 GLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVC 368
GKR + R V++ +P + + E+G+P A L + + +N E++
Sbjct: 319 ----------GKRVNFSARTVISPEPFLSINEVGVPEAAARELTVPITVTEYNIEKMKEI 368
Query: 369 ISFRLLEKGELYVCRKGGLVRI--RRID-----------ALELGDIIYRPLTDGDIVLIN 415
+ KG+ Y+ ++R RRI L++G ++ R L DGD+VL N
Sbjct: 369 VRRGSNPKGDKYLPGANYVIRPDGRRIKITDRNAEDVSKKLDIGWVVERHLIDGDVVLFN 428
Query: 416 RPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
R PS+H S++ VKV+P + N C P++ DFDGD ++ ++ Q+ AR E L
Sbjct: 429 RQPSLHRMSMMGHLVKVMP-NRTFRFNLAVCPPYNADFDGDEMNLHVLQSEEARAEAKIL 487
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFK 535
+ + + +++ + G ++ D +TA LL + + Q + + + L
Sbjct: 488 MLVQEHILSPRFGGPIIGGIHDHITAMFLLTHKNPKFTKEQTIHMLSYLDYDELPEPHKD 547
Query: 536 ISKDSVWSGKQLFSMLLPPDFEYTFPSK------------------DVY--ISGGKLISA 575
+ + + GK+LFS++LP D F SK D Y I GKL++
Sbjct: 548 ENGNEFYYGKELFSLILPKDLNMEFKSKICDPSVCNNKCVHEACPIDAYVVIRNGKLVAG 607
Query: 576 E-GSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
+ + +G L + KR + F+ + +S RG T + D + +
Sbjct: 608 TIDENAIGSMKGKLLDRIAKRGSKEARKFIDNMTRLAVGVISYRGFTSGIDDEDIPEEAI 667
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
I + EI +++ +++ + L+ S E L E R
Sbjct: 668 ---IQIHEII------KESIKKTDELIELYKQGLLQPAPGRSVE----ETLEMEIMR--V 712
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
L+ A +A K +A K+ +NS + M ++G++ ++L L Q + +G Q
Sbjct: 713 LAHARDEAGK--------IASKHLGLENSSVIMARSGARASMLNLSQMAGSIGQQSVRGQ 764
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R + + + R GD A+ + VE+S+ GL+P E F HS+ R+
Sbjct: 765 RLHRGYQDRTLPHFKR---GDLGALARGF-----VESSYKKGLSPTEYFFHSMGGRE-GL 815
Query: 815 SDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQ 871
D A G + RRL+ + DL DG V + GN +VQF Y +G PT G +
Sbjct: 816 VDTAVRTSRSGYMQRRLINALEDLKVIEDGKVVDTAGN-VVQFIYGEDGVD-PTRSSGGE 873
Query: 872 PV 873
V
Sbjct: 874 NV 875
>gi|408381652|ref|ZP_11179200.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
gi|407815583|gb|EKF86153.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
Length = 871
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 160/590 (27%), Positives = 261/590 (44%), Gaps = 88/590 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-G 377
GKR + R V++ DPNI + E+G+P +A + + + WN E + I + G
Sbjct: 311 GKRVNFSARTVISPDPNISINEVGVPLMIATEVTVPIYVTEWNIEDMKKYIRNGPKQHPG 370
Query: 378 ELYVCRKGGL-VRIRR------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R +R+ I+ LE G ++ R L DGDIVL NR PS+H S++A V
Sbjct: 371 ANYVIRPDARKIRVYDETKEAIIEKLEPGFVVERHLMDGDIVLFNRQPSLHRMSMMAHEV 430
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
KVLP + +N C P++ DFDGD ++ ++ Q +R E L+ + + +++ + G
Sbjct: 431 KVLPYKT-FRLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKSLMRVQEHILSPRFGGP 489
Query: 491 LLSLGQDSLTAAHLLM-------EDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWS 543
++ D ++ A+LL ED V L+ QL + P ++ W+
Sbjct: 490 IIGGIHDHISGAYLLTREGSNFREDDV-FQMLKKSQLPIPKP------------RNQEWT 536
Query: 544 GKQLFSMLLPPDFEYTFPSK---------------DVY--ISGGKLIS-AEGSSWLRDYE 585
GK++FS+LLP D + ++ D Y I G+L S A +
Sbjct: 537 GKEIFSLLLPKDLNMVYKAEICRKCDECLRQECKNDAYVVIENGQLKSGAIDEKAYGAFS 596
Query: 586 GNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIF 644
G + ++K Y D+ +FL AA ++ + RG T S +D +EI
Sbjct: 597 GKILDSVVKEYGTDRAREFLDAATKLAISGIMKRGFTTSTAD--------------EEI- 641
Query: 645 YGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDA 702
REAQD + + L+ A ++ +L G L + E + L +A +
Sbjct: 642 --PREAQDRIEELLSRAEQKVEMLIEAYHNDELEALPGRSLRETLEMKIMQVLGEARDKS 699
Query: 703 FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
+ +A Y DN + M G++G++L L Q + C+G Q + R
Sbjct: 700 GE--------IAESYFGMDNHAVIMALTGARGSMLNLTQIAACVGQQ---SVRGGRIERG 748
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---D 819
S + G+ A S V +S+ TGL+PLE F H++ R+ D A
Sbjct: 749 YSKRTLPHFQEGELGAKA-----SGFVHSSYKTGLDPLEFFFHAMGGRE-GLVDTAIRTA 802
Query: 820 LPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ ++DL D TVR+ G ++Q Y +G + G
Sbjct: 803 QSGYMQRRLVNALQDLSVNADKTVRDNRG-VVIQTHYGEDGIDPAKSDYG 851
Score = 55.1 bits (131), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 24 ISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTIL 83
++ DT E +E G + +PRLG+ +P C SCG+K C+GHFG I ++
Sbjct: 30 VTPDTYDEDGYPIEAG----LMDPRLGVIDPGLRCRSCGSKG-GDCQGHFGHINLARPVV 84
Query: 84 HPYFLSDIAKLLNSICPKCKTI 105
H F I K+L S C +C +
Sbjct: 85 HVGFADTIHKILRSTCSECGRV 106
>gi|195478969|ref|XP_002100717.1| GE17218 [Drosophila yakuba]
gi|194188241|gb|EDX01825.1| GE17218 [Drosophila yakuba]
Length = 1383
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 157/596 (26%), Positives = 264/596 (44%), Gaps = 76/596 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+ + ++G+P +VA+ L ER+N N + + + + G
Sbjct: 357 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPG 416
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++G R + L+ GDI+ R L DGDIVL NR PS+H S++
Sbjct: 417 ANYVQQRGSSFKKYLAYGNREKVAQELKCGDIVERHLRDGDIVLFNRQPSLHKMSIMCHR 476
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 477 AKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGE 535
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL-------QMFCPHRFLSPDIFKISKDSVW 542
L++ QD +T +LL + V L+ + QL + H L P + +W
Sbjct: 536 ILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPAL-LKPRRLW 594
Query: 543 SGKQLFSMLLPPDFE-------------YT----FPSKD--VYISGGKLISA--EGSSWL 581
+GKQ+FS+L+ P+ + YT S D ++I +L+ + ++
Sbjct: 595 TGKQMFSLLMRPNDDSHVRLNMVNKGRNYTRNMDLCSNDSWIHIRNSELMCGVMDKATMG 654
Query: 582 RDYEGNLFQYLIKRYRD-KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ +F L++ + + ++ + +L RG + +SD+ + S+K+L
Sbjct: 655 SGTKQCIFYLLLRDFGELHATKAMWRLARIASYFLQNRGFSFGISDV-----TPSKKLLQ 709
Query: 641 DEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
+ L CN + +++ + E+ S+ LS ++++A
Sbjct: 710 HKELL-LNNGYSKCNEYIEMLKAGTLQCQPGCTPEETLESVMLRELSAIREQAA------ 762
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
K F ++ NS L M +GSKG+ + + Q C+G Q A R
Sbjct: 763 ----KTCFAELH--------PTNSALIMALSGSKGSNINISQMIACVGQQ---AISGKRV 807
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P+ A A+ + V+NSF +GL P E F H++ R+
Sbjct: 808 PNGFENRALPHFERHSAIPAARGF-----VQNSFYSGLTPTEFFFHTMAGREGLVDTAVK 862
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G L RRL+ + DL YDGTVRNA N++V Y +G + E ++PV
Sbjct: 863 TAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPV 917
Score = 48.1 bits (113), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
R+ +NI GI+A ++ + + G ++ H++++A+ ++A GE +G+
Sbjct: 1238 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1297
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA R+ S F A F AA G D + G + + G +GTG
Sbjct: 1298 RHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPAGIGTG 1351
>gi|344229980|gb|EGV61865.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1453
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 150/589 (25%), Positives = 262/589 (44%), Gaps = 86/589 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N +L + +S + G
Sbjct: 367 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKILTYPEKCTRYNRIKLQKLILSGPDVHPG 426
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++ R++ L +GD++ R + DGD+VL NR PS+H S+++
Sbjct: 427 ANYVLKQNENTKRNLRFGDRVKIAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHY 486
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 487 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 545
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
+++ QD +T ++L+ + QL +F P I S+W+GKQ
Sbjct: 546 PIIAATQDFITGSYLITHKDSFFERASVNQLLCMMSDANLQFDLPPPAIIKPVSLWTGKQ 605
Query: 547 LFSMLLPPD----------------------FEYTFPSKDVY--ISGGKLISA--EGSSW 580
+FS+L+ P+ F D Y I G +++S + S+
Sbjct: 606 VFSLLIKPNKASNVVINLDAKAKTYIPPERHFANEMSPNDGYVIIRGSQILSGVMDKSTL 665
Query: 581 LRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ ++F +++ Y + + + ++ +L RG ++ ++D+ S ++K L
Sbjct: 666 GDGKKHSVFYTILRDYGPTEAAEAMNRMSKLCARYLGNRGFSIGINDVTPGSDLKNKKEL 725
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
M E Y L D ++ K T+ E + E + LS+
Sbjct: 726 MVEQAY-------------LKCDELIDLYNRGK--LETQPGCNEEQTLEAKIGGLLSKVR 770
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLS 756
+ + ++ +L N+ L M GSKG+ L + Q +G Q + P
Sbjct: 771 EEVGEVCIKELDSL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDG 822
Query: 757 FR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813
F+ PH T+ +K+ V NSF +GL P E H+++ R+
Sbjct: 823 FQDRSLPH--------------FTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGL 868
Query: 814 FSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G ++RRLM + DL + YD TVRN+ N IVQF+Y +G
Sbjct: 869 VDTAVKTAETGYMSRRLMKSLEDLSSQYDNTVRNS-SNGIVQFTYGGDG 916
Score = 47.4 bits (111), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
D EK + +V E GA+ + ++G+ ++ECS+C + +C GHFG I+ + H
Sbjct: 41 DLEKGR-TVKEFGAL----DTKMGISANSSECSTCHG-NLASCHGHFGHIRLALPVFHVG 94
Query: 87 FLSDIAKLLNSICPKCKTIRKERQ 110
+ I ++L IC C I + Q
Sbjct: 95 YFKAIIQILQCICKNCGHILLDEQ 118
>gi|328790760|ref|XP_003251457.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like, partial
[Apis mellifera]
Length = 1374
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 185/696 (26%), Positives = 303/696 (43%), Gaps = 106/696 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------S 370
GKR D R V++ DPN++++++G+P VA+ L E++N N E + +
Sbjct: 358 GKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPG 417
Query: 371 FRLLEKGELYV---CRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+++G+ R G +I + L+ GDI+ R L D D+VL NR PS+H S++A
Sbjct: 418 ANFIQQGKTQFKKYLRYGNRQKIAQ--DLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMA 475
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
K+L N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++
Sbjct: 476 HKAKILD-HRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGNKSNLVTPRN 534
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ---MFCPHRFLS---PDIFKISKDSV 541
G L++ QD +T +LL + + L+ Q QL + P +S P+ + ++
Sbjct: 535 GELLIAATQDFITGGYLLTQKDMFLNKTQASQLAGCLLAGPDIAMSINLPEPAILKPTTL 594
Query: 542 WSGKQLFSMLLPPDF-------------------EYTFPSKDVYISGGKLI--SAEGSSW 580
W+GKQ+FS++L P+ E V I +L+ S + S+
Sbjct: 595 WTGKQIFSLILKPNNTCNIKANLKTKGRAYTTNEELCINDSYVIIRNSELLAGSMDKSTL 654
Query: 581 LRDYEGNLFQYLIKRYRDKVLDF-LYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ N+F L++ + + + ++ + +L RG ++ + D+
Sbjct: 655 GSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQ-------- 706
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSL-QGEHLSYEKQRSAALSQA 698
GL +A+ Q+L+ + +D E R + Q E + L +
Sbjct: 707 ------GLLKAK-----QELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILKEL 755
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD----NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
SV I++ A K K+ NS L M +GSKG+ + + Q C+G Q A
Sbjct: 756 SV---------IRDHAGKACLKELHPSNSPLIMALSGSKGSFINISQMIACVGQQ---AI 803
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R P+ A AK + VENSF +GL P E F H++ R+
Sbjct: 804 SGHRVPNGFEDRALPHFERHSKIPAAKGF-----VENSFYSGLTPTEFFFHTMGGREGLV 858
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ + DLC YD TVRN+ G+ IVQ Y + E D P
Sbjct: 859 DTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGD-IVQILYGGDALDPTYMEGKDCP 917
Query: 873 VG---------SLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
V + S C E +LD + T+ LLN + EC S++ Q +S
Sbjct: 918 VDYKRILDHVRAKSPCKNEE----SLDGHSVIKATNELLNSEE-YECLSEEFK--QELST 970
Query: 924 FL---SNKLGKRRHGFEYGALEVKNHLECLMLSDIV 956
FL + K+ + RH + V LE L +S +V
Sbjct: 971 FLKSVARKIARLRHNAALN-VPVILQLERLTVSQLV 1005
Score = 48.9 bits (115), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + R+G N T C+SCG K C GHFG+I + H + I +L +IC C
Sbjct: 55 VLDRRMGTCNNTTNCASCG-KTLNECIGHFGYIDLELPVFHVGYFRSIIGILQTICKNCS 113
Query: 104 TI 105
+
Sbjct: 114 HV 115
>gi|111278801|gb|ABH09098.1| RNA polymerase II largest subunit [Pyrenula pseudobufonia]
Length = 1007
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 147/590 (24%), Positives = 259/590 (43%), Gaps = 90/590 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L ++
Sbjct: 268 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARNLTYPEVVTPFNVDKLKRLVANG 327
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G +V R G RID L+ G + R ++ GDI+L NR PS+
Sbjct: 328 PTEHPGARFVVRDDGT----RIDLRHHKRTSELTLQFGWKVERHISHGDIILFNRQPSLX 383
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ AR EL L +
Sbjct: 384 XXXXXXXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEEARAELANLCMVPLN 442
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ Q L+ + QD+L + + V LS Q+ ++ P + P +
Sbjct: 443 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNTMLWVPDWDGVIPQPAVLKPRP 502
Query: 541 VWSGKQLFSMLLPPDFEYTFPSKD---------------VYISGGKLI------SAEGSS 579
W+GKQ+ SM+LPP+ KD +++ G+L+ + G+S
Sbjct: 503 RWTGKQVISMVLPPNLNLVRIDKDSGEEYERFSPLADGGLFVDRGELMFGLFNKKSVGTS 562
Query: 580 WLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
G + + + + + F AQ V+ WL G ++ + D + + +
Sbjct: 563 -----AGGIIHTVFNEFGPETAMAFFNGAQTVVNYWLLHYGFSIGIGD--TVPDNATVES 615
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ +++ E + Q N + A+ + R ++E + + AL+ A
Sbjct: 616 IKEQVNQRKSEVESITQKAQ-------NQELEAQPGMNVRE------TFESKVAKALNDA 662
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPL 755
A +++L N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 663 RDGAGGATESSLKDL--------NNAIQMARAGSKGSTINIAQMTAIVGQQSVEGKRIPF 714
Query: 756 SFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
F++ PH D + ++ + VENS+L GL P E F H++ R+
Sbjct: 715 GFKYRTLPH---------FAKDDYSAQSRGF-----VENSYLRGLTPSEFFFHAMAGREG 760
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + + YD TVR+A GN +VQF Y +G
Sbjct: 761 LIDTAVKTAETGYIQRRLVKALEETTVRYDNTVRDARGN-VVQFIYGEDG 809
>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1765
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 153/585 (26%), Positives = 254/585 (43%), Gaps = 88/585 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGD NI L E+G+P +A L E + +N RL ++
Sbjct: 355 LRGNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLSYPETVTPYNISRLHQYVANG 414
Query: 373 LLE-KGELYVCRKGGL------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G YV R G V+ R +LE G + R L GD ++ NR PS+H S+
Sbjct: 415 PNEHPGAKYVIRSDGSRIDLRHVKGRNGISLEYGWKVERHLLTGDYIIFNRQPSLHKESM 474
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ R E+ L + +++
Sbjct: 475 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVRGLCMVPLNIVSP 533
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + L V L+ + + ++ P + P + W+G
Sbjct: 534 QRNSPLMGIVQDTLAGCYKLCRRDVFLTKEHVMNIMLWVPDWDGIIPMPCILRPRPRWTG 593
Query: 545 KQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFL 604
KQ+ SM++P ++ + GN F L D L +
Sbjct: 594 KQIISMIIP-------------------------KFVTTHTGNDFNPL----NDDTL--M 622
Query: 605 YAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH 664
+ E++ L+ + + S + H C + D L Q N+ L
Sbjct: 623 IQSGELMYGLLTKKNVGASSGGII---HICYNEQGPDSAMAFLNGCQRVVNYMLLHYGHS 679
Query: 665 MNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV-------------DAFKHVFWDIQ 711
+ + D E+ +Q H++ +K A L+QA+ + F+
Sbjct: 680 IGIGDTIPDQETIAKIQA-HITEQKTEVAELTQAATTNTLEALPGMNIRETFESKVSKAL 738
Query: 712 NLAY-KYGS------KD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF- 759
N A K G+ KD N+ + M ++GSKG+ + + Q + +G Q P F++
Sbjct: 739 NTAREKAGTTTEKSLKDLNNAVTMSRSGSKGSAINISQMTALVGQQIVEGKRIPFGFKYR 798
Query: 760 --PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
PH D + A+ + VENS+L GL P E F H++ R+
Sbjct: 799 TLPH---------FTKDDYSPEARGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTA 844
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 845 VKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGD-IIQFVYGEDG 888
Score = 40.4 bits (93), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ +P LG + +C +C C GHFG I+ + HP F+ K+L +C +C
Sbjct: 55 LNDPLLGSVDRQFKCKTCN-NSMSECPGHFGHIELAKPVYHPGFIKKTKKILEMVCHECG 113
Query: 104 TIRKERQKGAG---SSRKEQPRV 123
+ ++ G + R P+V
Sbjct: 114 KLLCDKDNDEGFLDAIRTRDPKV 136
>gi|25145495|ref|NP_501127.2| Protein RPC-1 [Caenorhabditis elegans]
gi|351059526|emb|CCD66619.1| Protein RPC-1 [Caenorhabditis elegans]
Length = 1400
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 158/617 (25%), Positives = 265/617 (42%), Gaps = 117/617 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+++ ++G+P VA L E +N+ N E++ + I+ + G
Sbjct: 354 GKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 413
Query: 378 ELYVCRKGG----LVRIRRIDAL----ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ K L++ + D L +GD I R L D D+VL NR PS+H S+++
Sbjct: 414 ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHR 473
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV+P N C+P++ DFDGD ++ ++PQ A+ E +EL+ + LI +SG
Sbjct: 474 AKVMP-GRTFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGE 532
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDS--------- 540
L++ QD +T +LL L ++ +RF + I +K
Sbjct: 533 PLVAAIQDFITGGYLLTHKDTFLPRAEV--------YRFAAALIDASAKKQTKIRIPPPA 584
Query: 541 ------VWSGKQLFSMLLPP----DFEYTFPSKDVYISGG-KLISAEGSSWLRD------ 583
+W+GKQL +++ P D +K+ +G +L S + +R+
Sbjct: 585 IRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAG 644
Query: 584 ----------YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASH 632
+ N+F L++ Y D +D ++ + +LS RG ++ + D+ +
Sbjct: 645 CLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQ 704
Query: 633 --------------SCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
CS+ I E+ G +AQ C + E+
Sbjct: 705 LLREKGQLVDNGYSKCSQYI--KELEEGKLKAQPGCT-----------------EEETLE 745
Query: 679 SLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLK 738
S+ LS + + + ++NL SK N+ L M GSKG+ +
Sbjct: 746 SIILRELSTIRDHAGQVC-------------LRNL-----SKYNAPLTMAVCGSKGSFIN 787
Query: 739 LVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLN 798
+ Q C+G Q A R P + T AK + V NSF +GL
Sbjct: 788 ISQMIACVGQQ---AISGHRPPDGFEERSLPHFERKKKTPEAKGF-----VANSFYSGLT 839
Query: 799 PLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY 856
P E F H++ R+ G + RRL+ + DLC +YDGTVR++ G+ +++F +
Sbjct: 840 PTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGD-VIEFVF 898
Query: 857 NIEGTSTPTGEIGDQPV 873
+G E D V
Sbjct: 899 GEDGLDPAMMEAKDGSV 915
Score = 45.1 bits (105), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P++G+ T CS+CG C GHFG+ + H F +LL IC C +I
Sbjct: 58 DPKMGVSTKTGTCSTCGL-GLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSI 116
>gi|83320452|gb|ABC02853.1| RNA polymerase II largest subunit, partial [Umbelopsis ramanniana]
Length = 571
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 132/482 (27%), Positives = 230/482 (47%), Gaps = 67/482 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ + E+G+P +A L E + +N ++L + E
Sbjct: 105 LMGKRVDFSARTVITGDPNLSVDEVGVPRSIARTLTYPEIVTPYNMDKLQTLVRNGPTEH 164
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R + DGD+V+ NR PS+H S+
Sbjct: 165 PGAKYVIRDTG----ERIDLRYHKRAGEIPLQYGYKVERHINDGDVVIFNRQPSLHKMSM 220
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ++ R E+TE+ + KQ+++
Sbjct: 221 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSLETRAEITEICMVPKQIVSP 279
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS + ++ + QD+L + LS + + M+ P +P I K +W
Sbjct: 280 QSNKPVMGIVQDTLAGVNKFTRRDSFLSKDLVMNIVMWVPDWDGYLPTPAILK--PKPMW 337
Query: 543 SGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISA-EGSSWLRDYEG 586
+GKQ+ SM++P PD E T+ S V+I G+LI + G
Sbjct: 338 TGKQILSMIIPKGINCQTFHFNHPDGETTWISPRDTRVFIENGELICGIVCKKTVGTASG 397
Query: 587 NLFQYLI-KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
L ++ ++ + +FL AQ V+ WL G ++ + D + + + M+ I
Sbjct: 398 GLIHTIMNEQGPEAAKNFLNGAQTVVNYWLLQNGFSIGIGD------TIADRDTMENITG 451
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKH 705
+ A+D Q+++ L + +D + S+E + + AL++A DA K
Sbjct: 452 LISSAKDRV--QEII-------LAAQQDKLEVQPGMTIRESFEAKVNQALNKARDDAGKK 502
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF--- 759
++ +DN++ M AGSKG+ + + Q + C+G Q+ P F+F
Sbjct: 503 AQSSLR--------EDNNVKQMVVAGSKGSFINISQMTACVGQQNVEGKRIPYGFKFRTL 554
Query: 760 PH 761
PH
Sbjct: 555 PH 556
>gi|327311709|ref|YP_004338606.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
gi|326948188|gb|AEA13294.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
Length = 884
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 152/584 (26%), Positives = 245/584 (41%), Gaps = 86/584 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DPN+ + E+G+P +A+ L + ER+ WN + L + R E
Sbjct: 325 GKRVNFSARTVISPDPNLSINEVGVPIDIAKILTVPERVTEWNIDDLRQAV-MRGPETWP 383
Query: 377 GELYVCRKGGLVRIRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G YV G RR+D L G I+ R + DGDI L NR PS+H S
Sbjct: 384 GANYVITPEG----RRVDLRYVKDRKQLAEKLAPGWIVERHIRDGDIALFNRQPSLHRVS 439
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ V+VLP I+ C P++ DFDGD ++ +IPQ AR E L+ + + ++
Sbjct: 440 MMGHIVRVLP-GRTFRIHLAVCPPYNADFDGDEMNLHIPQTEEARAEARTLMLVQEHIVT 498
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
+ G ++ QD + A+LL + LL+ + L P+ + +W+G
Sbjct: 499 PRYGGAIIGARQDYIIGAYLLSRKTTLLTKKEAAYLAGAMKLEGDLPEPAIMHPVELWTG 558
Query: 545 KQLFSMLLPPDFEYTFPS------KDVYISGGKLISAEGSSWLRDYEGN----------- 587
KQ+ SM LP D + P+ K+ Y + E W+ GN
Sbjct: 559 KQIISMALPKDLNWVQPTAFKSACKEPY-------TCETDEWIIIINGNMVTGTLDKKSI 611
Query: 588 -------LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
L+ + + Y D +L ++ V +L +RG ++ L LY+ S +
Sbjct: 612 GAEQVDSLWHRIARDYPSDVARKWLDSSLRVFLRFLDLRGFSIGLDSLYIPSEA------ 665
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
+RE ++DS +N + + L+ Y Q + L
Sbjct: 666 -------VREVGK-------IIDSGINKALELIELYREGKLEAMP-GYTVQET--LENRL 708
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
+ V D + + +Y K++ M K G++G+L +VQ LG Q R
Sbjct: 709 AEVLSKVRSDAEGVVERYIDKNSEAYLMAKTGARGSLTNIVQMVATLGQQTIRGE---RI 765
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
GD + ++ S SF+ GL P+E F H+ RD
Sbjct: 766 KRGYRTRTLPHFPVGDIGPFSGGFVSS-----SFVKGLTPVEYFFHAAGGRDGLIDTAVR 820
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G + RR++ ++D AYDGTVR G ++Q Y +GT
Sbjct: 821 TAQSGYMQRRIINALQDAYVAYDGTVRYGSG-LLLQPLYGDDGT 863
Score = 52.8 bits (125), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNP------------RLGLPNPTNECS 59
VP+ ++ I GI + + SV+EI SE+ + RLG+ P C
Sbjct: 10 VPTKVIKDIKFGILSPDLIRRYSVLEI-TTSEIYDEGGLPIRGGLMDRRLGVAEPGARCE 68
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+CG + C GHFG I+ ++H F I +L + CP C I
Sbjct: 69 TCG-QPYDVCPGHFGHIELAKPVIHVEFARFIYDVLRATCPNCGRI 113
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS
8797]
Length = 1721
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 156/582 (26%), Positives = 259/582 (44%), Gaps = 79/582 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A L E + +N +RL+ +
Sbjct: 335 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNG 394
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R+ G RID L+ G + R + D D VL NR PS+H
Sbjct: 395 PNEHPGAKYVIRENG----DRIDLRYSKRAGDVQLQYGWKVERHIMDDDPVLFNRQPSLH 450
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 451 KMSMMAHKVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 509
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L +L L + + + P +P I K
Sbjct: 510 IVSPQSNKPCMGIVQDTLCGIRILTLRDTFLELDHVLNMLYWVPDWDGVIPTPAILK--P 567
Query: 539 DSVWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGN 587
+W+GKQ+ S+ +P KD + I G + + G
Sbjct: 568 KPLWTGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 627
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + + L+ Q+V+ WL G + + D + + + EI
Sbjct: 628 LIHVVTREKGPQTCARLFGNIQKVVNFWLLHNGFSTGIGD------TIADGATIKEITET 681
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ EA+ +++ ++ N L++AK + R S+E L++A A +
Sbjct: 682 IAEAKKKV--EEVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGR-- 730
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
LA + N + M AGSKG+ + + Q S C+G Q + F F P
Sbjct: 731 ------LAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLP 784
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 785 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 830
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YD T RN+ GN ++QF Y +G
Sbjct: 831 AETGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDG 871
Score = 40.0 bits (92), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG ++ +PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLN---DPRLGSIDRNLKCQTC-QEGMSECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FITKIKKVCECVCMHC 110
>gi|330507365|ref|YP_004383793.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
gi|328928173|gb|AEB67975.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
Length = 875
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 159/578 (27%), Positives = 262/578 (45%), Gaps = 74/578 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DPN+ + E+G+P +A L + NS N E + + R ++
Sbjct: 311 GKRVNFSARTVISPDPNLSIGEVGVPMDIAMELSVPMIANSRNMEIVKTFVR-RGPDRHP 369
Query: 377 GELYVCRKGGLVRIRRID--------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
G YV R R++ D +++G I R L DGDIVL NR PS+H S+++
Sbjct: 370 GVNYVTRPDQR-RVKVTDKNCEEVAEQIDIGWKIDRQLADGDIVLFNRQPSLHRMSIMSH 428
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
VKV+P + +NP C P++ DFDGD ++ ++PQ AR E L+ + + +++ + G
Sbjct: 429 RVKVMPYKTF-RLNPAVCPPYNADFDGDEMNMHVPQTEEARAEAEILMRVQENILSPRFG 487
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHL-QMQQLQMFCPHRFLSPDIFKISKDSVWSGKQL 547
++ D +T + LL + M+ L+ F +P+ +++ + W+GKQ+
Sbjct: 488 GPIIGGIHDYVTGSFLLTHGRKPIDRRGAMELLKKFDITELPAPE-GELNGEPYWTGKQI 546
Query: 548 FSMLLPPDFEYTFPS---------------KDVY--ISGGKL-ISAEGSSWLRDYEGNLF 589
FS++LP + F + D Y I G+L I + + ++G +
Sbjct: 547 FSLILPRGLDLNFKADFCYNCDVCKNEECENDAYVVIQDGQLKIGTIDAKAVGAFKGKIT 606
Query: 590 QYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+IK Y V +FL + + G + + D + + +D+I R
Sbjct: 607 DRIIKEYSPSVASEFLDRMTRLALRGIMHAGFSFGIDDEDIPPEA------VDQIEETTR 660
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHV 706
A++ QQ L+ A ++ L G L + E + L +A A K
Sbjct: 661 TAREKA--QQ---------LIEAYNAGELEPLPGRTLDETLEMRIMQTLGKARDTAGK-- 707
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCA 766
+A +Y DNS + M +G++G++L L Q + C+G Q R +
Sbjct: 708 ------IAGRYLGLDNSGVVMAVSGARGSMLNLTQMAACVGQQSVRGE---RIMRGYAGR 758
Query: 767 AWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGT 823
R GD A + VE+S+ GLNP E F H++ R+ D A G
Sbjct: 759 TLPHFRRGDLGAEAHGF-----VESSYKDGLNPTEFFFHAIGGRE-GLVDTAIRTSQSGY 812
Query: 824 LTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
L RRL+ ++DL YDGTV+ G IVQF Y +G
Sbjct: 813 LQRRLVNALQDLEVKYDGTVKETRG-MIVQFKYGEDGV 849
Score = 51.2 bits (121), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 24 ISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTIL 83
I+ DT + +E+G + +PRLG+ +P C SCG + + C GHFG I ++
Sbjct: 29 ITADTYDDDGFPIEMG----LMDPRLGVIDPGLRCRSCGGRPGE-CPGHFGHIDLIAPVI 83
Query: 84 HPYFLSDIAKLLNSICPKC 102
H F I K+L +IC C
Sbjct: 84 HVGFAKLIRKVLRAICRDC 102
>gi|157741548|gb|ABV69479.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
Length = 999
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 154/591 (26%), Positives = 255/591 (43%), Gaps = 98/591 (16%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISF 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++ I
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNISKLKNLIIRG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGDI+L NR P
Sbjct: 322 PESHPGARYIIRENN----ERIDLRYHKDLKGIALKTGWKVERHIMDGDIILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS + + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIMLWVPDWDGVIPLPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY-- 596
W+GKQ+ SM+LPP G+ + G S L +G L L +
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKASQPPGERFAPAGDSGLFVADGQLMFGLFNKKSV 547
Query: 597 ----------------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ + F AQ V+ WL G ++ + D + KI
Sbjct: 548 GTGSNGVVHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDFGTVEKI-- 604
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQA 698
F+ + + + + +E +L G ++ ++E + SAAL+ A
Sbjct: 605 --------------KFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 650
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAP 754
+A A + KD N+ + M +AGSKG+ + + Q + +G Q P
Sbjct: 651 RDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIP 701
Query: 755 LSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRD 811
F++ PH D + +K + VENS+L GL P E F H++ R+
Sbjct: 702 FGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFHAMAGRE 747
Query: 812 SSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + ++ YD TVR++ GN IVQF Y +G
Sbjct: 748 GLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGN-IVQFVYGEDG 797
>gi|157741494|gb|ABV69452.1| RNA polymerase II largest subunit, partial [Endocarpon adscendens]
Length = 999
Score = 169 bits (428), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 164/639 (25%), Positives = 279/639 (43%), Gaps = 116/639 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 488 GPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ W G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWFLHNGFSIGIGDTVPDIGTV 601
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ ++ D + + + + +E +L G ++ ++E + S
Sbjct: 602 EK----------IKSEVDKKK-------AEVERITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD- 799
Query: 864 PTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+ A+ L + + L+E L+
Sbjct: 800 -GAHIESQRV---DVIAMSDGAFEKLFR-VDLMEPKKLV 833
>gi|302661310|ref|XP_003022324.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
gi|291186264|gb|EFE41706.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
Length = 1444
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 161/607 (26%), Positives = 262/607 (43%), Gaps = 108/607 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L I G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQRIRNGTKTWPG 431
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G R+ + L GDI+ R L +GDIVL NR PS+H S+++
Sbjct: 432 ANYLIKEGNSFRLFLKYGNLNMIANQLREGDIVERHLENGDIVLFNRQPSLHKLSILSHF 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKNGE 550
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL---QMFCPHRFLSPDIFKISKDSVWSGKQ 546
+++ QD +TAA+LL Q+ + RF P I +W+GKQ
Sbjct: 551 PIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTGKQ 610
Query: 547 LFSMLLPPDFEYTFPSK---DVYISGGKLISA------EGSSWL--RDYE---------- 585
+FS+L+ P+ + P K D KL+ E WL R+ E
Sbjct: 611 VFSVLMRPNKDC--PVKVNLDAACRQLKLVKGQPRDLCENDGWLCIRNSEMLCGVADKST 668
Query: 586 ------GNLFQYLIKRYRDKVLDFLYAA--------QEVLCEWLSVRGMTVSLSDLYLAS 631
N+F ++I+R DF YAA ++ WL+ +G ++ ++D+Y
Sbjct: 669 IGAGKKDNIF-FVIQR------DFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPG- 720
Query: 632 HSCSRKILMDEIFYGLREAQDTCNFQQ----LMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
E L++ FQQ + S M DS T
Sbjct: 721 ----------ESLVKLKDTLINTAFQQCDDLIAAASKEKPQMGKSDSRQT---------A 761
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
E + + L++ A ++ ++ SK N+ L M GSKG+ + + Q +G
Sbjct: 762 ENEITGILNKVRQQAGEYCISEV--------SKHNAPLIMATCGSKGSNINVSQMVAVVG 813
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q + + + + R ++ + V NSF +GL P E H++
Sbjct: 814 QQSIENARVSKGFQDRTLPHFAR--------HSQHALAKGFVRNSFFSGLTPTEFLFHAM 865
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------N 857
+ R+ G ++RRLM + DL T YD TVR++ + I+QF Y N
Sbjct: 866 SGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRDS-SSFIIQFQYGDDQLDPVN 924
Query: 858 IEGTSTP 864
+E ++ P
Sbjct: 925 MEASAKP 931
Score = 54.7 bits (130), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ N ++ C +CG D + C GHFG+++ H + ++L IC C I
Sbjct: 66 DPRLGISNKSDTCETCGG-DLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKI 124
Query: 106 -----------RKERQKGAGSSRKEQ--PRVCKYCVRNPAQWY 135
++ R+ G + R+ Q R+ C + P +Y
Sbjct: 125 LLPEDERRSYLKELRRPGLDNLRRMQINKRINVRCRKTPVCYY 167
Score = 48.5 bits (114), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I+ R+ +++ GI+A + + S +S G I P H+ ++A+ ++ G
Sbjct: 1281 DGIEGHRTRTNHVMEMRDVLGIEAARTTIIDEISSVMS--GMAIDPRHMQLLADVMTYKG 1338
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D +QG + + GK
Sbjct: 1339 EVLGITRFGLAKIR-----DSVLQLASFEKTADHLFDAGGAGRRDTVQGVSECIIMGKTI 1393
Query: 1250 SVGTG 1254
S+GTG
Sbjct: 1394 SLGTG 1398
>gi|321451320|gb|EFX63013.1| hypothetical protein DAPPUDRAFT_67470 [Daphnia pulex]
Length = 1391
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 159/600 (26%), Positives = 270/600 (45%), Gaps = 83/600 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ ++G+P VA+ L +N N E + + + + G
Sbjct: 362 GKRVDFSGRTVISPDPNLRIDQVGVPEMVAKILTYPTLVNEANIELMRKLVRNGPDIHPG 421
Query: 378 ELYVCRKGGLVRI------RRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
+++ +K + I R A L+ GD+I R + D DIVL NR PS+H S++
Sbjct: 422 AIFLKKKVSKLTISLKHGNRETLARNLKRGDVIERHMMDEDIVLFNRQPSLHKLSIMCHR 481
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+LP N C+P++ DFDGD + + PQ AR E L+ L+ ++G
Sbjct: 482 AKILP-HRTFRFNECVCTPYNADFDGDEMTLHFPQTEEARAEALILMTNKSNLVTPRNGE 540
Query: 490 NLLSLGQDSLTAAHLL-MEDS---------VLLSHLQMQQLQMFCPHRFLSPDIFKISKD 539
L++ QD +T A+LL ++D+ ++ S L ++ M + P I K +
Sbjct: 541 LLIAAIQDFITGAYLLTLKDAFFDRAKTCQMVASMLAGDEVNMVI--KLPPPCIQKPA-- 596
Query: 540 SVWSGKQLFSMLLPPD-------------FEYTFPSKDVYISGGKLI---------SAEG 577
++WSGKQ+FS++L P+ EY+ +++ ++ G L+ +
Sbjct: 597 ALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSKKNEEFCVNDGFLLVRNSEVLAGCVDK 656
Query: 578 SSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR 636
S+ + N+F L++ Y D + ++ V ++ RG ++ + D+
Sbjct: 657 STIGSGSKINIFYVLLRDYGEDFAIQAMWKLGRVASYYMMNRGFSIGIGDVTPG------ 710
Query: 637 KILMDEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAAL 695
K L+ E L C+ + +L+ L ES S + LS + ++ +
Sbjct: 711 KTLLKEKQKLLDSGFSKCDEYIRLLTIGQSPCLPGCNVEESLESKIHKELSGIRDQAGEV 770
Query: 696 SQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPL 755
+ + NS L M K+GSKG+ + + Q C+G Q A
Sbjct: 771 CKKELHP------------------SNSPLVMSKSGSKGSYINISQMIACVGQQ---ALN 809
Query: 756 SFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
R P+ + + AK + V NSF +GL+P E F H+++ R+
Sbjct: 810 GKRVPNGFEDRSLPHFKRHSKIPAAKGF-----VSNSFYSGLSPTELFFHAMSGREGLVD 864
Query: 816 DNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
P + RRL+ F+ DLC YD TVRN+ G +I+QF Y +G E D+PV
Sbjct: 865 TAVKTAEPMYMQRRLIKFLEDLCCQYDSTVRNSAG-EIIQFVYGGDGLDPTYMEAKDRPV 923
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 26/199 (13%)
Query: 1063 VMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALM 1122
VM L K V+KG ++ +V I D++ + L V + + + +
Sbjct: 1194 VMNELPKVVIKGLTDVSRVVINIDDRRNPPRHS--------LLVEGNNMREVMATYG--- 1242
Query: 1123 NDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVA 1182
+ + + +NI GI+A ++ + G ++ H+ +++
Sbjct: 1243 ---------VQGSSTTSNNILEVFSTLGIEAAKSMIAKEIKFTMESHGMSVDRRHVALLS 1293
Query: 1183 NTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDA 1242
+ +S GE +G+ GLA ++ S + A F + AA G D + G +
Sbjct: 1294 DLMSCRGEILGITRHGLAKMKQ-----SVLMLASFESTSDHLFDAAYYGQEDEVTGVSEC 1348
Query: 1243 LGWGKVPSVGTGGHFDIIY 1261
+ G ++GTG F ++Y
Sbjct: 1349 IIMGVPMAIGTGA-FKLLY 1366
>gi|281360912|ref|NP_001096987.2| CG17209 [Drosophila melanogaster]
gi|272506113|gb|ABW09418.2| CG17209 [Drosophila melanogaster]
Length = 1383
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 158/596 (26%), Positives = 261/596 (43%), Gaps = 76/596 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+ + ++G+P +VA+ L ER+N N + + + + G
Sbjct: 357 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPG 416
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++G R + L+ GD++ R L DGDIVL NR PS+H S++
Sbjct: 417 ANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHR 476
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 477 AKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGE 535
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL-------QMFCPHRFLSPDIFKISKDSVW 542
L++ QD +T +LL + V L+ + QL + H L P + +W
Sbjct: 536 ILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPAL-LKPRRLW 594
Query: 543 SGKQLFSMLLPPDFEYTFPSKDV-----YISGGKLISAEGSSWLRDYE-----------G 586
+GKQ+FS+L+ P+ + V Y L S + +R+ E G
Sbjct: 595 TGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCSNDSWIHIRNSELMCGVMDKATMG 654
Query: 587 N-----LFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ +F L++ + + ++ + +L RG + +SD+ + S+K+L
Sbjct: 655 SGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDV-----TPSKKLLQ 709
Query: 641 DEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
+ L CN + +L+ + E+ S+ LS ++++A
Sbjct: 710 HKELL-LNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAA------ 762
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
K F ++ NS L M +GSKG+ + + Q C+G Q A R
Sbjct: 763 ----KTCFAELH--------PTNSALIMALSGSKGSNINISQMIACVGQQ---AISGKRV 807
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P+ A A+ + V+NSF +GL P E F H++ R+
Sbjct: 808 PNGFENRALPHFERHSAIPAARGF-----VQNSFYSGLTPTEFFFHTMAGREGLVDTAVK 862
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G L RRL+ + DL YDGTVRNA N++V Y +G + E ++PV
Sbjct: 863 TAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPV 917
Score = 47.8 bits (112), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
R+ +NI GI+A ++ + + G ++ H++++A+ ++A GE +G+
Sbjct: 1238 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1297
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA R+ S F A F AA G D + G + + G +GTG
Sbjct: 1298 RHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG 1351
>gi|157741562|gb|ABV69486.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 153/597 (25%), Positives = 267/597 (44%), Gaps = 110/597 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N ERL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNIERLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL G + R + DGD++L NR P
Sbjct: 322 PQMHPGARYIIRENN----ERIDLRYHKNTADIALRTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYST-FRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V L+ ++ + ++ P P IFK
Sbjct: 430 IVSPQRNAPLMGIVQDTLCGIYKICRRDVFLAREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLP--------------PDFEYTFPSKDV--YISGGKLI--------S 574
W+GKQ+ SM+LP P E P+ D +++ G+L+
Sbjct: 488 RPRWTGKQIISMVLPPALNLVRIDGKSSQPPLERFAPAGDSGPFVADGQLMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVVNYWLLHNGFSIGIGD------TV 595
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+++I Y + + + + + + + +E +L G ++ ++E + S
Sbjct: 596 PDVGTVEKIKYEVDKKK-----------AEVERITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ + ++ YD TVR++ GN I+QF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEITVKYDTTVRDSRGN-ILQFIYGEDG 797
>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 161/616 (26%), Positives = 269/616 (43%), Gaps = 114/616 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R VV+ DPN+++ E+ +P +VA+ L E +N ++L + ++ G
Sbjct: 366 GKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPG 425
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++ R++ L +GD++ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHF 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLLM-EDSVLLSHLQMQQLQMF----CPHRFLSPDIFKISKDSVWSG 544
+++ QD +T ++L+ +DS +Q L M + P IFK +W+G
Sbjct: 545 PIIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKPV--MLWTG 602
Query: 545 KQLFSMLLPPD----------------------FEYTFPSKD--VYISGGKLISA-EGSS 579
KQ+FS+L+ P+ F D V I G +++S S
Sbjct: 603 KQIFSLLIRPNKNSKVLINLDAKNKTFIPPLKGFPNEMSQNDGFVVIRGSQILSGVMDKS 662
Query: 580 WLRD-YEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L D + ++F +++ Y D+ + + ++ ++ RG ++ ++D+ S +K
Sbjct: 663 LLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDVIPGSELKQKK 722
Query: 638 ILMDEIFY------------GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
LM E Y G E Q CN +Q + ++ + L+S R GE
Sbjct: 723 ELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTL-EAKIGGLLS-----KVREQVGE-- 774
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ K N+ L M GSKG+ L + Q
Sbjct: 775 ---------------------------ICIKELDSANAPLIMATCGSKGSTLNVSQMVAV 807
Query: 746 LGLQ---HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
+G Q + P F+ PH T+ +K+ V NSF +GL+P
Sbjct: 808 VGQQIISGNRVPDGFQDRSLPH--------------FTKNSKTPQSKGFVRNSFFSGLSP 853
Query: 800 LECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E H+++ R+ G ++RRLM + DL T YD TVRN+ N IVQF+Y
Sbjct: 854 TEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRNS-SNGIVQFTYG 912
Query: 858 IEGTSTPTGEIGDQPV 873
+G E +PV
Sbjct: 913 GDGLDPLDMEGDAKPV 928
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
D EK + + E GA+ + R+G+ + ++ECS+C + +C GHFG I+ + H
Sbjct: 41 DLEKGR-TAKESGAL----DTRMGISSNSSECSTCHG-NLASCHGHFGHIRLALPVFHVG 94
Query: 87 FLSDIAKLLNSICPKCKTI 105
+ +I +L SIC C I
Sbjct: 95 YFKNIMSVLQSICKNCGAI 113
>gi|380025198|ref|XP_003696364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like, partial [Apis florea]
Length = 1994
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 179/674 (26%), Positives = 293/674 (43%), Gaps = 105/674 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------S 370
GKR D R V++ DPN++++++G+P VA+ L E++N N E + +
Sbjct: 986 GKRVDFSSRTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPG 1045
Query: 371 FRLLEKGELYV---CRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+++G+ R G +I + L+ GDI+ R L D D+VL NR PS+H S++A
Sbjct: 1046 ANFIQQGKTQFKKYLRYGNRQKIAQ--DLQYGDIVERHLRDDDVVLFNRQPSLHKLSIMA 1103
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
K+L N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++
Sbjct: 1104 HKAKILD-HRTFRFNECVCTPYNADFDGDEMNLHVPQTEEARAEALVLMGNKSNLVTPRN 1162
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ---MFCPHRFLS---PDIFKISKDSV 541
G L++ QD +T +LL + + L+ Q QL + P +S P+ + ++
Sbjct: 1163 GELLIAATQDFITGGYLLTQKDMFLNKTQASQLAGCLLAGPDITMSINLPEPAILKPTTL 1222
Query: 542 WSGKQLFSMLLPPDF-------------------EYTFPSKDVYISGGKLI--SAEGSSW 580
W+GKQ FS++L P+ E V I +L+ S + S+
Sbjct: 1223 WTGKQXFSLILKPNNTCNIKANLKTKGRAYTTNEELCINDSYVIIRNSELLAGSMDKSTL 1282
Query: 581 LRDYEGNLFQYLIKRYRDKVLDF-LYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ N+F L++ + + + ++ + +L RG ++ + D+
Sbjct: 1283 GSGSKQNIFYILLRDWGEDIATIAMWRLARMASFFLMNRGFSIGIGDVTPGQ-------- 1334
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSL-QGEHLSYEKQRSAALSQA 698
GL +A+ Q+L+ + +D E R + Q E + L +
Sbjct: 1335 ------GLLKAK-----QELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILKEL 1383
Query: 699 SVDAFKHVFWDIQNLAYKYGSKD----NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
SV I++ A K K+ NS L M +GSKG+ + + Q C+G Q A
Sbjct: 1384 SV---------IRDHAGKACLKELHPSNSPLIMALSGSKGSFINISQMIACVGQQ---AI 1431
Query: 755 LSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSF 814
R P+ A AK + VENSF +GL P E F H++ R+
Sbjct: 1432 SGHRVPNGFEDRALPHFERHSKIPAAKGF-----VENSFYSGLTPTEFFFHTMGGREGLV 1486
Query: 815 SDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
G + RRL+ + DLC YD TVRN+ G+ IVQ Y + E D P
Sbjct: 1487 DTAVKTAETGYMQRRLVKSLEDLCLHYDMTVRNSVGD-IVQILYGGDALDPTYMEGKDCP 1545
Query: 873 VG---------SLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSL 923
V + S C E +LD + T+ LLN + EC S++ Q +S
Sbjct: 1546 VDYKRILDHVRAKSPCKNEE----SLDGHSVIKATNELLNSEE-YECLSEEFK--QELST 1598
Query: 924 FL---SNKLGKRRH 934
FL + K+ + RH
Sbjct: 1599 FLKTVARKIARLRH 1612
Score = 47.8 bits (112), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + ++G N T C+SCG K C GHFG+I + H + I +L +IC C
Sbjct: 683 VLDRKMGTCNNTTNCASCG-KTLNECIGHFGYIDLELPVFHVGYFRSIIGILQTICKNCS 741
Query: 104 TI 105
+
Sbjct: 742 HV 743
>gi|162944844|gb|ABY20491.1| LD04803p [Drosophila melanogaster]
Length = 1410
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 158/596 (26%), Positives = 260/596 (43%), Gaps = 76/596 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+ + ++G+P +VA+ L ER+N N + + + + G
Sbjct: 384 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPG 443
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++G R + L+ GD++ R L DGDIVL NR PS+H S++
Sbjct: 444 ANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHR 503
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 504 AKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGE 562
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF-------CPHRFLSPDIFKISKDSVW 542
L++ QD +T +LL + V L+ + QL H L P + +W
Sbjct: 563 ILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPAL-LKPRRLW 621
Query: 543 SGKQLFSMLLPPDFEYTFPSKDV-----YISGGKLISAEGSSWLRDYE-----------G 586
+GKQ+FS+L+ P+ + V Y L S + +R+ E G
Sbjct: 622 TGKQMFSLLMRPNDDSQVRLNMVNKSRNYTRNKDLCSNDSWIHIRNSELMCGVMDKATMG 681
Query: 587 N-----LFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ +F L++ + + ++ + +L RG + +SD+ + S+K+L
Sbjct: 682 SGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDV-----TPSKKLLQ 736
Query: 641 DEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
+ L CN + +L+ + E+ S+ LS ++++A
Sbjct: 737 HKELL-LNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAA------ 789
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
K F ++ NS L M +GSKG+ + + Q C+G Q A R
Sbjct: 790 ----KTCFAELH--------PTNSALIMALSGSKGSNINISQMIACVGQQ---AISGKRV 834
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P+ A A+ + V+NSF +GL P E F H++ R+
Sbjct: 835 PNGFENRALPHFERHSAIPAARGF-----VQNSFYSGLTPTEFFFHTMAGREGLVDTAVK 889
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G L RRL+ + DL YDGTVRNA N++V Y +G + E ++PV
Sbjct: 890 TAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPV 944
Score = 47.8 bits (112), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
R+ +NI GI+A ++ + + G ++ H++++A+ ++A GE +G+
Sbjct: 1265 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1324
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA R+ S F A F AA G D + G + + G +GTG
Sbjct: 1325 RHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG 1378
>gi|116201487|ref|XP_001226555.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
gi|88177146|gb|EAQ84614.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
Length = 1290
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 154/599 (25%), Positives = 262/599 (43%), Gaps = 86/599 (14%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+ ++++ +P VA+ L ER+N N E+L I+ + G
Sbjct: 240 GKRVDFSGRTVISPDPNLSIEQVAVPELVAKNLTYPERVNHANIEKLRERVITGPNIWPG 299
Query: 378 ELYVCRKGGL----------VRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
+ +K G +R + + LE GD++ R L D D+VL NR PS+H S+++
Sbjct: 300 AQGIIKKDGAKYNLKIGNESLREKHANNLEHGDVVERHLEDNDVVLFNRQPSLHKLSIMS 359
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ ++
Sbjct: 360 HLAKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLVTPKN 418
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQM----QQLQMFCPHRFLSPDIFKISKDSVWS 543
G +++ QD +TAA+LL + Q+ + H L P I ++W+
Sbjct: 419 GEPIIAATQDFITAAYLLSSKDIFFDRASFTYVCTQMLLGDTHLELPPPAI-IKPRALWT 477
Query: 544 GKQLFSMLLPPDFEYT------------FPSKDVYISGGKLISA--------------EG 577
GKQ+F++L+ P+ E F KD I + A +
Sbjct: 478 GKQIFNVLMRPNKESPVLVNLEAKNKVFFKKKDGQIPDMDIDDAFLVVRNSEVMCGRMDK 537
Query: 578 SSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSR 636
++ + ++F +++ + D + ++ LS+RG ++ + D++ + S
Sbjct: 538 ATVGGGKKNSVFYVILRDFGPDHAAVAMNRLSKLCARTLSLRGFSIGVGDVWPSGSLTSH 597
Query: 637 KILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
K + E +A + C+ L+ L A +L E S LS
Sbjct: 598 KAQLVE------DAYNKCD--DLIETYRQGKLEKAPGCNLEETL-------ENSISGILS 642
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
+ A + ++ SK+N+ L M K+GSKG+ + + Q C+G Q
Sbjct: 643 KVRQQAGNYCVGNL--------SKNNAPLIMAKSGSKGSDINVAQMVACVGQQIIGGK-- 692
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P + +K + V NSF TGL P E H+++ R+
Sbjct: 693 -RVPDGFQDRSLPHFHKNARQPPSKGF-----VRNSFYTGLVPTEFLFHAISGREGLVDT 746
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEGTSTPT 865
G ++RRLM + DL T YD TVR + G IVQF Y ++EG + P
Sbjct: 747 AVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGG-IVQFQYGADRLDPVDMEGDAKPV 804
>gi|386001093|ref|YP_005919392.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|312183603|gb|ADQ42371.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|357209149|gb|AET63769.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
Length = 878
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 156/581 (26%), Positives = 264/581 (45%), Gaps = 79/581 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DPN+ + E+G+P ++A L + +N N E + + R +K
Sbjct: 313 GKRVNFSARTVISPDPNLSINEVGVPLEIAMELSVPLVVNGRNIEVMRDFVR-RGADKHP 371
Query: 377 GELYVCRKGGLVRIRRI-----------DALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RR+ D LE G + R L DGDIVL NR PS+H S+
Sbjct: 372 GVNYVTRADG----RRVKVTDRNAEEVADQLEPGWKVDRQLMDGDIVLFNRQPSLHRMSI 427
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
++ V V+P +NP C P++ DFDGD ++ ++PQ AR E L+ + + +++
Sbjct: 428 MSHRVIVMP-HKTFRLNPAVCPPYNADFDGDEMNLHVPQTEEARAEAEILMRVQENILSP 486
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQ-MQQLQMFCPHRFLSPDIFKISKDSVWSG 544
+ G ++ D +T LL +S ++ M+ L+ P + + + W+G
Sbjct: 487 RFGGPIIGGIHDYVTGNFLLTHGDRRISRIEVMEVLKKLHHLEIPEPVGWNEAGEPYWTG 546
Query: 545 KQLFSMLLPPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWLRDYEG 586
KQ+FS++LP F + D Y I GK+++ ++ + ++G
Sbjct: 547 KQIFSLILPRGLNLEFKASFCKNCDSCKREACDDDAYVVIRDGKILTGTIDAAAVGAFKG 606
Query: 587 NLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFY 645
+ +IK Y V F+ ++ + + G + + D + + + ++++
Sbjct: 607 KITDRVIKEYGPTVGAGFIDGMTQMAIRGIMLAGFSFGIDDEDIPKDAEDQ---IEDVLN 663
Query: 646 GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAF 703
RE ++ L+ A + L G L + E + L +A +A
Sbjct: 664 AARE--------------NVTKLIDAYKAGELEPLPGRTLDETLEMRIMQTLGKARDNA- 708
Query: 704 KHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHEL 763
++A +Y DNS + M +G++G++L L Q + C+G Q S+ R +E
Sbjct: 709 -------GSIAGRYLGIDNSGVVMAVSGARGSMLNLTQMAACVG-QQSVRGERIRRGYE- 759
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DL 820
R GD A + V++S+ GLNP E F H++ R+ D A
Sbjct: 760 -GRTLPHFRRGDLGAEAHGF-----VQSSYKEGLNPTEFFFHAIGGRE-GLVDTAIRTSQ 812
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGT 861
G L RRL+ ++DL YDGTV+ G IVQFSY +G
Sbjct: 813 SGYLQRRLINALQDLEVQYDGTVKETRG-IIVQFSYGEDGV 852
Score = 52.0 bits (123), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 24 ISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTIL 83
I+ DT + +E+G + +PRLG+ +P C SCG + + C GHFG I ++
Sbjct: 31 ITADTYDDDGFPIEMG----LMDPRLGVIDPGLRCRSCGGRPGE-CPGHFGHIDLIAPVI 85
Query: 84 HPYFLSDIAKLLNSICPKC 102
H F I K+L +IC C
Sbjct: 86 HVGFAKLIRKILRAICRDC 104
>gi|320035344|gb|EFW17285.1| DNA-directed RNA polymerase III largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1444
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 158/604 (26%), Positives = 264/604 (43%), Gaps = 101/604 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA + ER+ +N E+L + + + G
Sbjct: 372 GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431
Query: 378 ELYVCRKGGLVRI--------RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++G ++ D LE GD++ R L DGDIVL NR PS+H S+++
Sbjct: 432 ANYLSKRGTTFKVFLKYGNLNLMADQLEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHF 491
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P +N C+P++ DFDGD ++ ++PQ AR E EL+ + L ++G
Sbjct: 492 VKVRP-HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGE 550
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL--QMFCP-HRFLSPDIFKISKDSVWSGKQ 546
+++ QD +TAA+LL Q+ M P +F P + +W+GKQ
Sbjct: 551 PIIAAIQDFITAAYLLSSKDNFYDRGSFTQICGYMLQPGTKFDLPPPAVLKPQMLWTGKQ 610
Query: 547 LFSMLLPPD-------------FEYTFPS---------------KDVYISGGKLISAEGS 578
+F++L+ P E+ P ++ I G + +
Sbjct: 611 VFNVLMRPSKESPVLVNLDAACREFRAPKGTPRDLDPNDGWLCIRNSEIMCGVMDKSTIG 670
Query: 579 SWLRDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
S +D ++F +++ + +V + + + W + G ++ ++D+Y K
Sbjct: 671 SGKKD---SVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDSLLQAK 727
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
+ E EA C D+ + + K ++ E + E Q S LS+
Sbjct: 728 KQLVE------EAYAQC-------DALIQLFKAGKLEKAPGG--DEQQNMESQISGILSK 772
Query: 698 ASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
A + ++ SK NS L M +GSKG+ + + Q +G Q
Sbjct: 773 VRQQAGEQCIAEL--------SKWNSPLIMATSGSKGSTINVAQMIALVGQQ-------- 816
Query: 758 RFPHELSCAAWNRLRAG--DNT-----ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
A R++ G D T + A+ V NSF +GL P E F H+++ R
Sbjct: 817 -------IIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNSFFSGLIPSEFFFHAISGR 869
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSY--------NIEG 860
+ G ++RRLM + DL + YD TVRN+ N IVQF Y ++EG
Sbjct: 870 EGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSN-IVQFQYGDDKLDPVDMEG 928
Query: 861 TSTP 864
+ P
Sbjct: 929 KAKP 932
Score = 48.9 bits (115), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D I TR+ +NI GI+A + + + D G I P H+ ++A+ ++ G
Sbjct: 1285 DGIFGTRTRTNNIMETKDVLGIEAARTTIVDEISDVMKDMG--IDPRHMQLLADVMTYKG 1342
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GLA R S A F A AG D ++G + + GK
Sbjct: 1343 EVLGITRFGLAKMR-----DSVLQLASFEKTADHLFDAGGAGRTDLVEGVSECIILGKSV 1397
Query: 1250 SVGTGG 1255
S+GTG
Sbjct: 1398 SLGTGA 1403
Score = 42.0 bits (97), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
R+G+ + + C +CG + C GHFG ++ H + + +L IC C I
Sbjct: 68 RMGISSKSGTCETCGGA-LQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDCSRI 124
>gi|157741608|gb|ABV69509.1| RNA polymerase II largest subunit, partial [Wahlenbergiella
striatula]
Length = 999
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 157/597 (26%), Positives = 267/597 (44%), Gaps = 110/597 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RLS ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRTIARNLTYPETVTKFNIGRLSQLVANG 321
Query: 373 L-LEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G YV RK G RID L+ G + R L D D++L NR P
Sbjct: 322 PNVHPGAKYVVRKQG----ERIDLRHMKTSRGVELQTGMKVERHLMDEDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ +M+LP E P+ D ++++ G+L+
Sbjct: 488 RPRWTGKQMINMVLPTALNLVRIDAKASQSPCERFAPAGDGGLFVADGQLLFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------EATMAFFNGAQTVVNYWLLHNGFSIGIGDT-VPDVGT 600
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
K+ ++ N ++ V+ + + +E +L G ++ ++E + S
Sbjct: 601 VEKVRLE------------VNKKKAEVEE----ITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 146/568 (25%), Positives = 259/568 (45%), Gaps = 61/568 (10%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPNI+L ++G+P VA+ L E + +N +L+ + +
Sbjct: 350 LMGKRVDFSARSVISGDPNIELDQVGVPRTVAQTLTYPEVVTPYNIGQLTQLVRNGPNQY 409
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID L+ G + R L DGD VL NR PS+H S+
Sbjct: 410 PGARYVIRDSG----ERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLFNRQPSLHKMSM 465
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +V+P S+ IN +P++ DFDGD ++ ++PQ+ + EL E+ A+ +Q+++
Sbjct: 466 MCHKXRVMPFSTF-RINLSVTTPYNADFDGDEMNMHVPQSYETKAELEEICAVPRQIVSP 524
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
QS + ++ + QD+L + +++ Q+ + + P + P + +W+G
Sbjct: 525 QSNKPVMGIVQDTLVGVRKMTLRDSFVAYDQLMNMCFWNPGWDGVVPQPAVLKPRPLWTG 584
Query: 545 KQLFSMLLPP-------DFEYTFP--SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+FS+ +P D P S + +G + + + G L ++
Sbjct: 585 KQVFSLTIPRGIFLQRVDGPPLSPRDSGMLIRNGDVMFGVVNKATVGTSSGGLIHTCMRE 644
Query: 596 YRDKVLDFLYAAQEVLCE-WLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTC 654
+ + + + +C WL G ++ + D + + M I + A+D
Sbjct: 645 KGPRECARMIGSIQKVCNYWLLHNGFSIGIGD------AIADPDTMKTITKTIATAKD-- 696
Query: 655 NFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLA 714
Q ++ D+ N L + + R S+E++ S L++A A K +++
Sbjct: 697 QVQGVIXDAQANRL-QPEPGMTVRE------SFEQKVSKILNEARDAAGKSAETSLKD-- 747
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
N++ M AGSKG+ + + Q S C+G Q R + +
Sbjct: 748 ------SNNVKQMVTAGSKGSYINISQMSACVGQQ---IVEGRRIYFGFADRSLPHFTKD 798
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
D + +K + VENS+L GL P E F H++ R+ G + RRL+ +
Sbjct: 799 DYSAESKGF-----VENSYLRGLTPQELFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 853
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
D+ YDGT RN+ G+ ++QF Y +G
Sbjct: 854 EDIMVQYDGTTRNSLGD-VIQFLYGEDG 880
Score = 48.5 bits (114), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + +C +CG +D K C GHFG I+ + H F+ I KL +C C
Sbjct: 53 LNDPRLGSIDRNFKCQTCG-EDMKECPGHFGHIELAKPVFHIGFMPKIKKLCECVCMNC 110
>gi|384871708|gb|AFI25034.1| FI19733p1 [Drosophila melanogaster]
Length = 1410
Score = 169 bits (427), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 158/596 (26%), Positives = 260/596 (43%), Gaps = 76/596 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+ + ++G+P +VA+ L ER+N N + + + + G
Sbjct: 384 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPG 443
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++G R + L+ GD++ R L DGDIVL NR PS+H S++
Sbjct: 444 ANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHR 503
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 504 AKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGE 562
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF-------CPHRFLSPDIFKISKDSVW 542
L++ QD +T +LL + V L+ + QL H L P + +W
Sbjct: 563 ILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDSTMHIKLPPPAL-LKPRRLW 621
Query: 543 SGKQLFSMLLPPDFEYTFPSKDV-----YISGGKLISAEGSSWLRDYE-----------G 586
+GKQ+FS+L+ P+ + V Y L S + +R+ E G
Sbjct: 622 TGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLCSNDSWIHIRNSELMCGVMDKATMG 681
Query: 587 N-----LFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
+ +F L++ + + ++ + +L RG + +SD+ + S+K+L
Sbjct: 682 SGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQNRGFSFGISDV-----TPSKKLLQ 736
Query: 641 DEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQAS 699
+ L CN + +L+ + E+ S+ LS ++++A
Sbjct: 737 HKELL-LNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAA------ 789
Query: 700 VDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759
K F ++ NS L M +GSKG+ + + Q C+G Q A R
Sbjct: 790 ----KTCFAELH--------PTNSALIMALSGSKGSNINISQMIACVGQQ---AISGKRV 834
Query: 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
P+ A A+ + V+NSF +GL P E F H++ R+
Sbjct: 835 PNGFENRALPHFERHSAIPAARGF-----VQNSFYSGLTPTEFFFHTMAGREGLVDTAVK 889
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G L RRL+ + DL YDGTVRNA N++V Y +G + E ++PV
Sbjct: 890 TAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPV 944
Score = 47.8 bits (112), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
R+ +NI GI+A ++ + + G ++ H++++A+ ++A GE +G+
Sbjct: 1265 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1324
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA R+ S F A F AA G D + G + + G +GTG
Sbjct: 1325 RHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTG 1378
>gi|366996196|ref|XP_003677861.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
gi|342303731|emb|CCC71514.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
Length = 1460
Score = 169 bits (427), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 156/597 (26%), Positives = 259/597 (43%), Gaps = 75/597 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ + E+ +P +VA+ L E++ +N ++L + I+ + G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKQKLQQLIINGPNVHPG 429
Query: 378 ELYVCRKGGLVR--------IRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ +K R I+ L+ GD++ R L DGD+VL NR PS+H S+++
Sbjct: 430 ANYLLKKNEDARRNLRYGDRIKLAKNLQHGDVVERHLEDGDVVLFNRQPSLHRLSILSHF 489
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 490 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 548
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQ 546
+++ QD +T ++L+ + QL + RF P + +W+GKQ
Sbjct: 549 PIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMSNGTLRFDIPPPAIMKPYYMWTGKQ 608
Query: 547 LFSMLLPP-----------------------DFEYTFPSKDVY--ISGGKLISA-EGSSW 580
+FS+L+ P D+ D Y I G ++S S
Sbjct: 609 VFSLLIRPNKESPVVINLDAKNKVFMPPKYKDYPNEMSRNDGYVVIRGSNILSGVMDKSV 668
Query: 581 LRD-YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKI 638
L D + ++F +++ Y + LC +L RG ++ +SD+ A +K
Sbjct: 669 LGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARYLGNRGFSIGISDVTPADDLKQKKE 728
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ EI Y C+ +L+ H K T+ E + E + LS+
Sbjct: 729 ELVEIAYA------KCD--ELIDQFH-------KGKLETQPGCNEEQTLEAKIGGLLSKV 773
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
+ ++ NL N+ L M GSKG+ L + Q +G Q R
Sbjct: 774 REEVGDVCINELDNL--------NAPLIMATCGSKGSTLNVSQMVAVVGQQ---IISGNR 822
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P + + T +K + V NSF +GL P E H+++ R+
Sbjct: 823 VPDGFQDRSLPHFQKNSKTPQSKGF-----VRNSFFSGLTPPEFLFHAISGREGLVDTAV 877
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G ++RRLM + DL YD TVR + N IVQF+Y +G E +PV
Sbjct: 878 KTAETGYMSRRLMKSLEDLSCQYDNTVRTS-SNGIVQFTYGGDGLDPMEMEGNAKPV 933
Score = 41.6 bits (96), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
++G+ + + EC +C + +C GHFG IK + H + ++L +C C I
Sbjct: 57 KMGVSSSSLECETCHG-NLASCHGHFGHIKLALPVFHVGYFKATIQILQGVCKTCSAI 113
>gi|157741522|gb|ABV69466.1| RNA polymerase II largest subunit, partial [Placidium arboreum]
Length = 989
Score = 169 bits (427), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 155/597 (25%), Positives = 266/597 (44%), Gaps = 110/597 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N RL ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISRLKQFVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ RID AL++G + R + DGD++L NR P
Sbjct: 322 PEMHPGARYIIREHN----ERIDLRYHKDTSQIALKVGWKVERHIVDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ +R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEESRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS ++ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLP--------------PDFEYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LP P E P D ++++ G+L+
Sbjct: 488 RPRWTGKQMVSMVLPSALNLVRIDGKASQPPGERFAPVGDSGLFVADGQLMFGMFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ WL G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWLLHNGFSIGIGDTVPDVGTV 601
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ + +E+ E + + + +E +L G ++ ++E + S
Sbjct: 602 EK--IKNEVDKKKAEVER---------------ITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDG 797
>gi|171186406|ref|YP_001795325.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
gi|170935618|gb|ACB40879.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
Length = 884
Score = 169 bits (427), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 153/594 (25%), Positives = 255/594 (42%), Gaps = 90/594 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK-- 376
GKR + R V++ DP+I + E+G+P +A+ L + ER+ WN + L + R E
Sbjct: 325 GKRVNFSARTVISPDPHISINEVGVPYDIAKILTVPERVTEWNVDVLREYV-MRGPETWP 383
Query: 377 GELYVCRKGGLVRIRRID------------ALELGDIIYRPLTDGDIVLINRPPSIHPHS 424
G YV G RRID L G I+ R L DGDIVL NR PS+H S
Sbjct: 384 GANYVITPEG----RRIDLRYVKDKRALAERLAPGWIVERHLVDGDIVLFNRQPSLHRVS 439
Query: 425 LIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLIN 484
++ VKVLP ++ C P++ DFDGD ++ ++PQ AR E L+ ++K +I
Sbjct: 440 IMGHIVKVLP-GRTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAEARTLMLVEKHIIT 498
Query: 485 QQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSG 544
+ G ++ QD + A+LL + S L+ ++ L P+ + +W+G
Sbjct: 499 PRYGGAIIGARQDYIIGAYLLSQKSTFLTKKELAYLLGAGKSTEDPPEPAFLHPVELWTG 558
Query: 545 KQLFSMLLPPDFEYTFPS------KDVY---------ISGGKLISA--EGSSWLRDYEGN 587
KQ+ S LP D + P+ +D Y I G ++ + S + +
Sbjct: 559 KQVISHFLPKDLNWVQPTAFKSKCQDAYRCAGDEWIIIINGVMVKGVLDKKSIGAEQVDS 618
Query: 588 LFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L+ + + Y +V +L ++ + +L +RG T + +YL + YG
Sbjct: 619 LWHRIARDYPPEVARRWLDSSLRLFLRYLDLRGFTFGIDSVYLPPEA-----------YG 667
Query: 647 LREA--QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFK 704
+A +++ +++ + + A + ++E + + LS+ DA
Sbjct: 668 EIDALVEESMKKADALIEEFRSGRLEAMPGFTVEE------TFENKITEILSKVREDA-- 719
Query: 705 HVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELS 764
+ KY SK+ M K G++G+++ +VQ LG Q
Sbjct: 720 ------AVVVEKYISKNTEGYLMAKTGARGSIVNIVQMVATLGQQ--------------- 758
Query: 765 CAAWNRLRAGDNTECAKSYIPSAV-------VENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R+R G T + P + V F GL P+E F H+ RD
Sbjct: 759 TIRGERIRRGYRTRTLPHFPPGDIGPHAGGFVGRCFRCGLTPVEYFFHAAAGRDGLIDTA 818
Query: 818 ADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
G + RRL+ ++D+ AYDGTVR + G ++Q Y +G + G
Sbjct: 819 VRTAQSGYMQRRLINALQDVYVAYDGTVRFS-GANLLQMLYGEDGVDVSRSDHG 871
Score = 51.6 bits (122), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEV------------TNPRLGLPNPTNECS 59
+P + I GI + K SVME+ SEV + RLG+ P C
Sbjct: 10 IPRKAIKSIKFGILSPEMIRKYSVMEV-TTSEVYDEGGLPVRGGIADRRLGVAEPGARCE 68
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+CG + C GHFG ++ ++H + I +L + CP C I
Sbjct: 69 TCG-QTHDVCPGHFGHVELVKPVIHVEYARIIYDVLRTTCPNCGRI 113
>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
VdLs.17]
Length = 1755
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 257/578 (44%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 353 LMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGKLHELVQNGPNEH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L GD ++ NR PS+H S+
Sbjct: 413 PGAKYVIRTDGT----RIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 469 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELCMVPINIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L A+ L V L+ ++ + ++ P+ P I + S W
Sbjct: 528 QRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPNWDGIIPVPAILRPSPR--W 585
Query: 543 SGKQLFSMLLP--------PDFEYTFPSKD--VYISGGKLISA-EGSSWLRDYEGNLFQY 591
+GKQ+ SM +P PD + KD + I G+L+ + G +
Sbjct: 586 TGKQIMSMAIPEIVSLNSLPDTKEDNSVKDEGLLIQSGQLMYGLLTKKVIGAASGGIVHI 645
Query: 592 LIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ + + + FL Q+ + WL G ++ + D + + ++++ + E
Sbjct: 646 VYNEHGPEAAMKFLNGVQQTVNYWLLHNGFSIGIGD------TIPDTLTIEKVQGHIDEQ 699
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+D + N + + R ++E + S AL+ A A +
Sbjct: 700 KDEV---ARLTKQATNNELEPSPGMNIRE------TFESKVSRALNTARDKAGTTTQKSL 750
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
++L N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 751 KDL--------NNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH--- 799
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 800 ------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETG 848
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 849 YIQRRLVKALEDVSAKYDGTVRNSLGD-IIQFLYGEDG 885
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 SEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
S + +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C +
Sbjct: 53 SGLNDPLLGSIDRQFKCKTC-TQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLE 111
Query: 102 CKTIRKER 109
C + +R
Sbjct: 112 CYKVLGDR 119
Score = 41.6 bits (96), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 1096 DDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGL 1155
DD E YL S TSL S LM ++ +D TR++ +++ +GI+A
Sbjct: 1318 DDRCQEWYLDTSG------TSLSSVLM------VEGVDATRTYTNHLWQINEVFGIEAAR 1365
Query: 1156 QFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQA 1215
+ L ++ G + HL ++ + ++ G + G+ + + + ++
Sbjct: 1366 GALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGISAVTRHGI-----NRADTGALMRC 1420
Query: 1216 FFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260
F ++AA G +D+ +G + + G++ +GT GHF+++
Sbjct: 1421 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGT-GHFEVL 1464
>gi|119643486|gb|ABL85572.1| RNA polymerase II largest subunit [Candelariella reflexa]
Length = 989
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 152/579 (26%), Positives = 261/579 (45%), Gaps = 82/579 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A L E + +N ++L + E
Sbjct: 262 LMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEH 321
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +L+ G + R + DGD H S+
Sbjct: 322 PGAKYVIRDTG----ERIDLRHHKRAGEISLQYGWKVERHIVDGDFXXXXXXXXXHKESM 377
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDG ++ ++PQ+ R E+ +L + +++
Sbjct: 378 MGHRVRVMPYST-FRLNLSVTSPYNADFDGYEMNLHVPQSEETRAEVNQLCMVPLNIVSP 436
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSG 544
Q L+ + QD+L + + V L+ + ++ P + P I +W+G
Sbjct: 437 QRNGPLMGIVQDTLCGIYNMCRRDVFLTKELXMNVLLWVPDWDGVIPQPAIIKPKPMWTG 496
Query: 545 KQLFSMLLPPDF-------EYTFPSKD--VYISGGKLISAEGSSWLRDYEGNLFQYLIKR 595
KQ+ S+++P E +P D + ISGG+L+ + G ++I
Sbjct: 497 KQILSLVIPTGLNLLRSSDEGFYPINDHGLLISGGELMYGLLNKKSVGASGGGIIHII-- 554
Query: 596 YRDK----VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
Y +K ++F AQ V+ WL G ++ + D ++ +++ +
Sbjct: 555 YNEKGWGAAMNFFNGAQTVVNYWLLHXGFSIGIGDTIPDRNT-------------IQQIE 601
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
D N Q+ D SA ++E SL G ++ ++E + S AL++A DA
Sbjct: 602 DAVNKQK---DEAGEITRSATENE-LDSLPGMNVRETFESKVSKALNKARDDAGTVTEKS 657
Query: 710 IQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFRF---PHEL 763
+++L N+ M ++GSKG+ + + Q + +G Q P F++ PH
Sbjct: 658 LKDL--------NNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH-- 707
Query: 764 SCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP-- 821
D + ++ + VENS+L GL P E F H++ R+
Sbjct: 708 -------FTKDDYSPESRGF-----VENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 755
Query: 822 GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ + D+ YDGTVRN+ G+ IVQF Y +G
Sbjct: 756 GYIQRRLVKALEDVMAKYDGTVRNSLGD-IVQFVYGEDG 793
>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium
albo-atrum VaMs.102]
Length = 1756
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 257/578 (44%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V+TGD N+ L E+G+P +A L E + +N +L + E
Sbjct: 353 LMGKRVDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGKLHELVQNGPNEH 412
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID +LE G + R L GD ++ NR PS+H S+
Sbjct: 413 PGAKYVIRTDGT----RIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNRQPSLHKESM 468
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ V+V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL + +++
Sbjct: 469 MGHRVRVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELCMVPINIVSP 527
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
Q L+ + QD+L A+ L V L+ ++ + ++ P+ P I + S W
Sbjct: 528 QRNGPLMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPNWDGIIPVPAILRPSPR--W 585
Query: 543 SGKQLFSMLLP--------PDFEYTFPSKD--VYISGGKLISA-EGSSWLRDYEGNLFQY 591
+GKQ+ SM +P PD + KD + I G+L+ + G +
Sbjct: 586 TGKQIMSMAIPEIVSLNSLPDTKEDNSVKDEGLLIQSGQLMYGLLTKKVIGAASGGIVHI 645
Query: 592 LIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ + + + FL Q+ + WL G ++ + D + + ++++ + E
Sbjct: 646 VYNEHGPEAAMKFLNGVQQTVNYWLLHNGFSIGIGD------TIPDTLTIEKVQGHIDEQ 699
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDI 710
+D + N + + R ++E + S AL+ A A +
Sbjct: 700 KDEV---ARLTKQATNNELEPSPGMNIRE------TFESKVSRALNTARDKAGTTTQKSL 750
Query: 711 QNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
++L N+ + M +GSKG+ + + Q + +G Q P F++ PH
Sbjct: 751 KDL--------NNAVTMALSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPH--- 799
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D + A+ + VENS+L GL P E F H++ R+ G
Sbjct: 800 ------FTKDDYSPEARGF-----VENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETG 848
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ + D+ YDGTVRN+ G+ I+QF Y +G
Sbjct: 849 YIQRRLVKALEDVSAKYDGTVRNSLGD-IIQFLYGEDG 885
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 42 SEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPK 101
S + +P LG + +C +C + C GHFG I+ + HP F+ + K+L +C +
Sbjct: 53 SGLNDPLLGSIDRQFKCKTC-TQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLE 111
Query: 102 CKTIRKER 109
C + +R
Sbjct: 112 CYKVLGDR 119
Score = 41.6 bits (96), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 1096 DDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGL 1155
DD E YL S TSL S LM ++ +D TR++ +++ +GI+A
Sbjct: 1318 DDRCQEWYLDTSG------TSLSSVLM------VEGVDATRTYTNHLWQINEVFGIEAAR 1365
Query: 1156 QFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQA 1215
+ L ++ G + HL ++ + ++ G + G+ + + + ++
Sbjct: 1366 GALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGISAVTRHGI-----NRADTGALMRC 1420
Query: 1216 FFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDII 1260
F ++AA G +D+ +G + + G++ +GT GHF+++
Sbjct: 1421 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGT-GHFEVL 1464
>gi|157741498|gb|ABV69454.1| RNA polymerase II largest subunit, partial [Endocarpon psorodeum]
Length = 999
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 164/639 (25%), Positives = 279/639 (43%), Gaps = 116/639 (18%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCIS-F 371
++ ++GKR D R V+TGDPN+ L E+G+P +A L E + +N +L ++
Sbjct: 262 LRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTRFNISKLKQLVTNG 321
Query: 372 RLLEKGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
G Y+ R+ RID AL+ G + R + DGD++L NR P
Sbjct: 322 PEAHPGARYIIRENN----ERIDLRYHKDTSQIALKTGWKVERHIMDGDVILFNRQPX-- 375
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
V+V+P S+ +N +P++ DFDGD ++ ++PQ+ R EL +L +
Sbjct: 376 -----XXRVRVMPYSTF-RLNLSVTTPYNADFDGDEMNLHVPQSEETRAELAQLCMVPLN 429
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ Q L+ + QD+L + + V LS Q+ + ++ P P IFK
Sbjct: 430 IVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLWVPDWDGVIPQPAIFK--P 487
Query: 539 DSVWSGKQLFSMLLPPDF--------------EYTFPSKD--VYISGGKLI--------S 574
W+GKQ+ SM+LPP E P+ D +++S G+L+
Sbjct: 488 RPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSGLFVSDGELMFGLFNKKSV 547
Query: 575 AEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
GS+ + N F + + + F AQ V+ W G ++ + D +
Sbjct: 548 GTGSNGIIHTIFNEFGH------ETAMAFFNGAQTVINYWFLHNGFSIGIGDTVPDIGTV 601
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRS 692
+ ++ D + + + + +E +L G ++ ++E + S
Sbjct: 602 EK----------IKSEVDKKK-------AEVERITQSAVAEDLEALPGMNVRETFESKVS 644
Query: 693 AALSQASVDAFKHVFWDIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQH- 750
AAL+ A +A A + KD N+ + M +AGSKG+ + + Q + +G Q
Sbjct: 645 AALNGARDEA---------GTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSV 695
Query: 751 --SLAPLSFRF---PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
P F++ PH D + +K + VENS+L GL P E F H
Sbjct: 696 EGKRIPFGFKYRTLPH---------FAKDDYSAASKGF-----VENSYLRGLTPTEFFFH 741
Query: 806 SVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST 863
++ R+ G + RRL+ + ++ YDGTVR++ GN IVQF Y +G
Sbjct: 742 AMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGN-IVQFIYGEDGLD- 799
Query: 864 PTGEIGDQPVGSLSACAISEAAYSALDQPISLLETSPLL 902
I Q V A+S+ A+ L + + L+E L+
Sbjct: 800 -GAHIESQRV---DVIAMSDGAFEKLFR-VDLMEPKKLV 833
>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 158/605 (26%), Positives = 272/605 (44%), Gaps = 92/605 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R VV+ DPN+++ E+ +P +VA+ L E +N ++L + ++ G
Sbjct: 366 GKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPG 425
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++ R++ L +GD++ R + DGD+VL NR PS+H S+++
Sbjct: 426 ANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRLSILSHF 485
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 486 AKVRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLTPKSGE 544
Query: 490 NLLSLGQDSLTAAHLLM-EDSVLLSHLQMQQLQMF----CPHRFLSPDIFKISKDSVWSG 544
+++ QD +T ++L+ +DS +Q L M + P IFK +W+G
Sbjct: 545 PIIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKPVM--LWTG 602
Query: 545 KQLFSMLLPPDFEYT------------------FPSKD------VYISGGKLISA-EGSS 579
KQLFS+L+ P+ + FP++ V I G +++S S
Sbjct: 603 KQLFSLLIRPNKKSKVLINLDAKNKTFIPPLKGFPNEMSQNDGFVVIRGSQILSGVMDKS 662
Query: 580 WLRD-YEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
L D + ++F +++ Y D+ + + ++ ++ RG ++ ++D+ S +K
Sbjct: 663 LLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDVIPRSELKQKK 722
Query: 638 ILM-DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
LM ++ + E D+ N +L N E + E + LS
Sbjct: 723 ELMVEQAYLKCDELIDSYNRGKLETQPGCN----------------EEQTLEAKIGGLLS 766
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLA 753
+ V + + K N+ L M GSKG+ L + Q +G Q +
Sbjct: 767 K--------VREQVGEICIKELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRV 818
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P F+ PH T+ +K+ V NSF +GL+P E H+++ R
Sbjct: 819 PDGFQDRSLPH--------------FTKNSKTPQSKGFVRNSFFSGLSPTEFLFHAISGR 864
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G ++RRLM + DL T YD TVRN+ N +VQF+Y +G E
Sbjct: 865 EGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTVRNS-SNGVVQFTYGGDGLDPLDMEG 923
Query: 869 GDQPV 873
+PV
Sbjct: 924 DARPV 928
Score = 49.7 bits (117), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
D EK + + E GA+ + R+G+ + ++ECS+C + +C GHFG I+ + H
Sbjct: 41 DLEKGR-TAKESGAL----DTRMGISSNSSECSTCHG-NLASCHGHFGHIRLALPVFHVG 94
Query: 87 FLSDIAKLLNSICPKCKTI 105
+ +I +L SIC C I
Sbjct: 95 YFKNIMSVLQSICKNCGAI 113
>gi|194894264|ref|XP_001978037.1| GG17910 [Drosophila erecta]
gi|190649686|gb|EDV46964.1| GG17910 [Drosophila erecta]
Length = 1383
Score = 168 bits (426), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 159/599 (26%), Positives = 264/599 (44%), Gaps = 82/599 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+ + ++G+P +VA+ L ER+N N + + + + G
Sbjct: 357 GKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPG 416
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV ++G R + L+ GDI+ R L DGDIVL NR PS+H S++
Sbjct: 417 ANYVQQRGSSFKKYLAYGNREKVAQELKCGDIVERHLRDGDIVLFNRQPSLHKMSIMCHR 476
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
KV P N C+P++ DFDGD ++ ++PQ AR E L+ L+ ++G
Sbjct: 477 AKVQP-QRTFRFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGE 535
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS----------PDIFKISKD 539
L++ QD +T +LL + V L+ + QL C FLS P +
Sbjct: 536 ILIAATQDFITGGYLLTQKEVFLTKEEAMQLAA-C---FLSNEDSTMHIKLPPPALLKPR 591
Query: 540 SVWSGKQLFSMLLPPDFE-------------YT----FPSKD--VYISGGKLISA--EGS 578
+W+GKQ+FS+L+ P+ + YT S D ++I +L+ + +
Sbjct: 592 RLWTGKQMFSLLMRPNDDSHVRLNMVNKGRNYTRNMDLCSNDSWIHIRNSELMCGVMDKA 651
Query: 579 SWLRDYEGNLFQYLIKRYRD-KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ + +F L++ + + ++ + +L RG + +SD+ + S+K
Sbjct: 652 TMGSGTKQCIFYLLLRDFGELHATKAMWRLARIASYFLQNRGFSFGISDV-----TPSKK 706
Query: 638 ILMDEIFYGLREAQDTCN-FQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
+L + L CN + ++ + E+ S+ LS ++++A
Sbjct: 707 LLQHKELL-LNNGYAKCNEYIDMLKAGTLQCQPGCTPEETLESVMLRELSAIREQAA--- 762
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
K F ++ NS L M +GSKG+ + + Q C+G Q A
Sbjct: 763 -------KTCFAELH--------PTNSALIMALSGSKGSNINISQMIACVGQQ---AISG 804
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
R P+ A A+ + V+NSF +GL P E F H++ R+
Sbjct: 805 KRVPNGFENRALPHFERHSAIPAARGF-----VQNSFYSGLTPTEFFFHTMAGREGLVDT 859
Query: 817 NADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPV 873
G L RRL+ + DL YDGTVRNA N++V Y +G + E ++PV
Sbjct: 860 AVKTAETGYLQRRLVKCLEDLVVHYDGTVRNAV-NEMVDTIYGGDGLDPVSMETRNKPV 917
Score = 48.1 bits (113), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 1136 RSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLN 1195
R+ +NI GI+A ++ + + G ++ H++++A+ ++A GE +G+
Sbjct: 1238 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1297
Query: 1196 AKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
GLA R+ S F A F AA G D + G + + G +GTG
Sbjct: 1298 RHGLAKMRE-----SVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPAGIGTG 1351
>gi|50549343|ref|XP_502142.1| YALI0C22550p [Yarrowia lipolytica]
gi|49648009|emb|CAG82462.1| YALI0C22550p [Yarrowia lipolytica CLIB122]
Length = 1483
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 154/587 (26%), Positives = 268/587 (45%), Gaps = 82/587 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKG 377
GKR D R V++ DPN+++ ++ +P +VA+ L ER+ S N E+L ++ I+ G
Sbjct: 361 GKRVDFSGRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPG 420
Query: 378 ELYVCRKGGLVR--------IRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ +KG +R + + LE+GD++ R L DGD+VL NR PS+H S++A
Sbjct: 421 ANYLFKKGESLRRNLRFGDRAKIAERLEIGDVVERHLEDGDVVLFNRQPSLHRLSILAHF 480
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
++ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 481 AQIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARTEAMCLMGVKHNLVTPRSGE 539
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDI--FKISKD-SVWSGKQ 546
+++ QD +T + L+ + ++ QL + DI I K +W+GKQ
Sbjct: 540 PIIAATQDFITGSFLISKKDYMIDRRTFCQLLAMMSDGDMQFDIPPPAIQKPVQLWTGKQ 599
Query: 547 LFSMLLPPD---------------FE---YTFPSKDVYISGGKLI--------SAEGSSW 580
+FS+L+ P+ F+ +P +D+ + G L+ A +
Sbjct: 600 VFSLLIRPNKSSKVIINLDAKNKTFQPPPQGYP-RDMSPNDGFLVIRNSQVMCGAMDKAT 658
Query: 581 LRD-YEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASH-SCSRK 637
L D + ++F +++ Y D+ + ++ WL RG ++ +SD+ + S +++
Sbjct: 659 LGDGKKDSVFYSILRDYGPDEAAGAMNRMAKLCARWLGGRGFSIGISDVTPGAELSSTKE 718
Query: 638 ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSL-QGEHLSYEKQRSAALS 696
IL+++ + AK E +L QG+ A
Sbjct: 719 ILVEQAY--------------------------AKCDELIEALAQGKLEPQPGCTPAQTL 752
Query: 697 QASVDA-FKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPL 755
+A + V ++ + K K N+ L M GSKG+ L + Q +G Q
Sbjct: 753 EAKIGGLLSKVREEVGEVCIKELEKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGK- 811
Query: 756 SFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS 815
R P+ + R T +K + V NSF +GL+P E H+++ R+
Sbjct: 812 --RVPNGFQDRSLPHFRKFSVTPPSKGF-----VRNSFYSGLDPPEFLFHAISGREGLVD 864
Query: 816 DNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G ++RRLM + DL YD TVR + N +VQF Y +G
Sbjct: 865 TAVKTAETGYMSRRLMKSLEDLSARYDSTVRTS-SNGVVQFRYGGDG 910
Score = 45.1 bits (105), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEIGAVS-------------EVTNPRLGLPNPTNECS 59
P ++ GI G + E KLS +E+ +PR+G+ + ++C
Sbjct: 17 PPRVIGGIEFGALSPQEILKLSEVEVATRDLYDLQKGRAPMEYGALDPRMGVSSNMSKCK 76
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+C A+ C GHFG +K H + +L ++C C I
Sbjct: 77 TC-AEPLATCPGHFGHVKLALPCFHIGYFKATISILQNVCKDCARI 121
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,569,334,817
Number of Sequences: 23463169
Number of extensions: 953609923
Number of successful extensions: 2053418
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5948
Number of HSP's successfully gapped in prelim test: 5538
Number of HSP's that attempted gapping in prelim test: 2012547
Number of HSP's gapped (non-prelim): 26347
length of query: 1443
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1287
effective length of database: 8,698,941,003
effective search space: 11195537070861
effective search space used: 11195537070861
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 84 (37.0 bits)