BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000525
(1443 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase D subunit 1 OS=Arabidopsis thaliana
GN=NRPD1 PE=1 SV=1
Length = 1453
Score = 1472 bits (3810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/1466 (52%), Positives = 1018/1466 (69%), Gaps = 56/1466 (3%)
Query: 6 CEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKD 65
CEE L+VP G LT I IS + +++K+SV+E+ A ++VT+ RLGLPNP + C +CG+KD
Sbjct: 5 CEE-LQVPVGTLTSIGFSISNNNDRDKMSVLEVEAPNQVTDSRLGLPNPDSVCRTCGSKD 63
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCK 125
RK CEGHFG I F ++I++PYFL ++A LLN ICP CK IRK++ + ++QP C+
Sbjct: 64 RKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYIRKKQFQIT----EDQPERCR 119
Query: 126 YCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKK-----LPDDYWGFIPFDA 180
YC N YP M+F++++K++ ++ I+VE++E+ K KK LP DYW F+P D+
Sbjct: 120 YCTLNTG--YPLMKFRVTTKEVFRRSGIVVEVNEESLMKLKKRGVLTLPPDYWSFLPQDS 177
Query: 181 QQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-----LKCFPVTPNNHRV 235
+E+ +KP R++++ QV LL +D + ++ KD P L FPVTPN +RV
Sbjct: 178 NIDESCLKPTRRIITHAQVYALLLGID-----QRLIKKDIPMFNSLGLTSFPVTPNGYRV 232
Query: 236 TEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDK-SSRKDSA 294
TE+ H F + +L FD TR KK+V + G +ELS V +C++ S+L + SS KDSA
Sbjct: 233 TEIVHQF-NGARLIFDERTRIYKKLVGFEGNTLELSSRVMECMQYSRLFSETVSSSKDSA 291
Query: 295 EVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQIS 354
QKK+ D GLR++KDV+LGKR+D FR VV GDP++KL EIGIP +A+RLQ+S
Sbjct: 292 NPYQKKS-DTPKLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVS 350
Query: 355 ERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLI 414
E LN N ERL LL+ E++V R LV I+ ++ L+ GD I+R L DGD VL+
Sbjct: 351 EHLNQCNKERLVTSFVPTLLDNKEMHVRRGDRLVAIQ-VNDLQTGDKIFRSLMDGDTVLM 409
Query: 415 NRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTE 474
NRPPSIH HSLIA+TV++LP +SVV++NP+CC PF GDFDGDCLHGY+PQ+I A+VEL E
Sbjct: 410 NRPPSIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDE 469
Query: 475 LVALDKQLINQQSGRNLLSLGQDSLTAAHLL-MEDSVLLSHLQMQQLQMFCPHRFLSPDI 533
LVALDKQLIN+Q+GRNLLSLGQDSLTAA+L+ +E + L+ QMQQLQM+CP + P I
Sbjct: 470 LVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCPFQLPPPAI 529
Query: 534 FKISKDSV---WSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYEGNLF 589
K S S W+G QLF ML PP F+YT+P +V +S G+L+S +EGS+WLRD EGN
Sbjct: 530 IKASPSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFI 589
Query: 590 QYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLRE 649
+ L+K + KVLD +Y+AQE+L +WL +RG++VSL+DLYL+S SRK L +EI YGLRE
Sbjct: 590 ERLLKHDKGKVLDIIYSAQEMLSQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGLRE 649
Query: 650 AQDTCNFQQLMVDSHMNFL-MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
A+ CN QQLMV+S +FL ++ +D E YE+Q+SA LS+ +V AFK +
Sbjct: 650 AEQVCNKQQLMVESWRDFLAVNGEDKEEDSVSDLARFCYERQKSATLSELAVSAFKDAYR 709
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
D+Q LAY+YG + NS L M KAGSKGN+ KLVQHS+C+GLQ+S LSF FP EL+CAAW
Sbjct: 710 DVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQNSAVSLSFGFPRELTCAAW 769
Query: 769 N------RLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLPG 822
N R G ++ +SY+P V+ENSFLTGLNPLE F+HSVTSRDSSFS NADLPG
Sbjct: 770 NDPNSPLRGAKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLPG 829
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAIS 882
TL+RRLMFFMRD+ AYDGTVRN++GNQ+VQF+Y +G P +I + +GSLSACA+S
Sbjct: 830 TLSRRLMFFMRDIYAAYDGTVRNSFGNQLVQFTYETDG---PVEDITGEALGSLSACALS 886
Query: 883 EAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALE 942
EAAYSALDQPISLLETSPLLNLKNVLECGSKK +QTMSL+LS L K++HGFEYG+LE
Sbjct: 887 EAAYSALDQPISLLETSPLLNLKNVLECGSKKGQREQTMSLYLSEYLSKKKHGFEYGSLE 946
Query: 943 VKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLY 1002
+KNHLE L S+IVSTSMII+SP + + SPW+CHFH+ ++++KR L S++ SL
Sbjct: 947 IKNHLEKLSFSEIVSTSMIIFSPSSNTKVPLSPWVCHFHISEKVLKRKQLSAESVVSSLN 1006
Query: 1003 RQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMW 1062
Q K+ ELK+ + D+ I N + S + Q +D C+TV +VE K + ++L+ I++
Sbjct: 1007 EQYKSRNRELKLDIVDLDIQNTNHCSSDDQAMKDDNVCITVTVVEASKHSVLELDAIRLV 1066
Query: 1063 VMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSF-GELYLRVSMSGQCHITSLWSAL 1121
++PFLL + VKG + IKKV+ILW D+ KA K + + GELYL+V+M G + W+AL
Sbjct: 1067 LIPFLLDSPVKGDQGIKKVNILWTDRPKAPKRNGNHLAGELYLKVTMYGDRGKRNCWTAL 1126
Query: 1122 MNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIV 1181
+ C IMDMIDW RSHPDNIR C YGIDAG F+ NLESA+SDTGK IL EHLL+V
Sbjct: 1127 LETCLPIMDMIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLV 1186
Query: 1182 ANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVD 1241
A++LS TGEFV LNAKG + QR+ S +PF QA FS+P F+KAAK G D+LQGS+D
Sbjct: 1187 ADSLSVTGEFVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSID 1246
Query: 1242 ALGWGKVPSVGTGGHFDIIYSGEGRTLSKPVDVYNLL-STPVSSKQNEKLKVCKAQGLIS 1300
AL WGKVP GTG F+II S + + PVDVY+LL ST + N K S
Sbjct: 1247 ALAWGKVPGFGTGDQFEIIISPKVHGFTTPVDVYDLLSSTKTMRRTNSAPK--------S 1298
Query: 1301 DKCGAK-FGDF--AF-KGLGNLDFETISRGVLRKSWTYNDVLRLSNALKKILHKYSIGQR 1356
DK + FG AF K + LD + I +LR +T+ ++ LS +LK+ILH Y I +
Sbjct: 1299 DKATVQPFGLLHSAFLKDIKVLDGKGIPMSLLRTIFTWKNIELLSQSLKRILHSYEINEL 1358
Query: 1357 LSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSIEDFSYHK 1416
L+E+D+ V L HP EK+G I V +H +S CF +VR DG+ EDFSYHK
Sbjct: 1359 LNERDEGLVKMVLQLHPNSVEKIGPGVKGIRVA-KSKHGDSCCFEVVRIDGTFEDFSYHK 1417
Query: 1417 CVIGALEIIAPEKAEIYRAKWKRLGT 1442
CV+GA +IIAP+K Y++K+ + GT
Sbjct: 1418 CVLGATKIIAPKKMNFYKSKYLKNGT 1443
>sp|Q5D869|NRPE1_ARATH DNA-directed RNA polymerase E subunit 1 OS=Arabidopsis thaliana
GN=NRPE1 PE=1 SV=1
Length = 1976
Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 353/1356 (26%), Positives = 602/1356 (44%), Gaps = 181/1356 (13%)
Query: 7 EEGLEVPSGILTGISLGISTDTEK--EKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAK 64
E E+ G + GI+ +++ E + +S I S++TN LGLP +C SCGA
Sbjct: 4 ESTSEILDGEIVGITFALASHHEICIQSISESAINHPSQLTNAFLGLPLEFGKCESCGAT 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVC 124
+ CEGHFG+I+ P I HP ++++ ++L+ +C KC I+K + G+S R+
Sbjct: 64 EPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKIKKAK----GTSGGLADRLL 119
Query: 125 KYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIP-FDAQQE 183
C +Q +S KD + A +E+ KL +++ P W F+ + +
Sbjct: 120 GVCCEEASQ--------ISIKDRASDGASYLEL--KLPSRSRLQPG-CWNFLERYGYRYG 168
Query: 184 ENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP----FLKCFPVTPNNHRVTEVP 239
+ +P L ++V +L+ + R++ P L+ PV PN V E
Sbjct: 169 SDYTRP----LLAREVKEILRRIPEESRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEAS 224
Query: 240 HAFS----HEKKLFFDNWTRHLKKMVDYRGRDIEL-SHLVQ--DCLKISKLHLDKSSRKD 292
FS ++ + + + + R + SH + + ++ +L
Sbjct: 225 DGFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRVVDTYLQVRGTAK 284
Query: 293 SAEVRQKKNIDI--------SNSSGLRW---IKDVVLGKRNDDCFRMVVTGDPNIKLKEI 341
+A +NID+ +SS W ++ + + K + R V+TGD + E+
Sbjct: 285 AA-----RNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEV 339
Query: 342 GIPCQVAERLQISERLNSWNWERLS------VCISFRLLEKGELYVCRKGGLVRIRRIDA 395
GIP ++A+R+ ER++ N L +C+S+ + Y R G
Sbjct: 340 GIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSY--TQGSTTYSLRDGSKGHTE---- 393
Query: 396 LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDG 455
L+ G +++R + DGD+V INRPP+ H HSL AL V V + V INPL CSP DFDG
Sbjct: 394 LKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHE-DNTVKINPLMCSPLSADFDG 452
Query: 456 DCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHL 515
DC+H + PQ++ A+ E+ EL +++KQL++ +G+ +L +G DSL + +++E V L
Sbjct: 453 DCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLE-RVFLDKA 511
Query: 516 QMQQLQMFCPHRFLSPDIFKISKDS-VWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS 574
QQL M+ P + K SK W+ Q+ + P + + G + +
Sbjct: 512 TAQQLAMYGSLSLPPPALRKSSKSGPAWTVFQILQLAFP---------ERLSCKGDRFL- 561
Query: 575 AEGSSWLR-----DYEGNLFQYLI-----KRYRDKVLDFLYAAQEVLCEWLSVRGMTVSL 624
+GS L+ D G++ ++ ++ + L F + Q +L E L G ++SL
Sbjct: 562 VDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSL 621
Query: 625 SDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684
DL ++ + MD I N ++ E + +
Sbjct: 622 EDLSMS------RADMDVIH---------------------NLII----REISPMVSRLR 650
Query: 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSL 744
LSY R + S+ K V A + K S+ + S + KLVQ +
Sbjct: 651 LSY---RDELQLENSIHKVKEV-------AANFMLKSYSIRNLIDIKSNSAITKLVQQTG 700
Query: 745 CLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFI 804
LGLQ S + A + + + G + +V+ F GL+P E
Sbjct: 701 FLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGD----FGIVKGCFFHGLDPYEEMA 756
Query: 805 HSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
HS+ +R+ + L PGTL + LM +RD+ DGTVRN N ++QF Y ++
Sbjct: 757 HSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSER 816
Query: 863 TPTG--EIGDQPVGSLSACAISEAAYSALDQPISLLETSPLLN-----LKNVLECGSKKS 915
G E G +PVG L+A A+S AY A +L++SP N +K VL C
Sbjct: 817 GHQGLFEAG-EPVGVLAATAMSNPAYKA------VLDSSPNSNSSWELMKEVLLCKVNFQ 869
Query: 916 NA--DQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHF 973
N D+ + L+L+ +R E A V+N L + L D ++ Y Q + F
Sbjct: 870 NTTNDRRVILYLNECHCGKRFCQENAACTVRNKLNKVSLKDTAVEFLVEYRKQPTISEIF 929
Query: 974 SPWIC---HFHVRKEIMKRTGL-------KEHSIIDSLYRQCKAARTE----LKISVPDM 1019
C H H+ K +++ + K +I+SL ++ K T+ +SV +
Sbjct: 930 GIDSCLHGHIHLNKTLLQDWNISMQDIHQKCEDVINSLGQKKKKKATDDFKRTSLSVSEC 989
Query: 1020 LISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLE-TIQMW---VMPFLLKTVVKGF 1075
C S + +D C+T ++ T DLE T+ + V P LL+ V+KG
Sbjct: 990 CSFRDPCGS-----KGSDMPCLTF----SYNATDPDLERTLDVLCNTVYPVLLEIVIKGD 1040
Query: 1076 REIKKVDILWKDKQKAS---KSHDDSFGELYLRVSM--SGQCHITSLWSALMNDCHQIMD 1130
I +I+W + H GE L V++ S W +++ C ++
Sbjct: 1041 SRICSANIIWNSSDMTTWIRNRHASRRGEWVLDVTVEKSAVKQSGDAWRVVIDSCLSVLH 1100
Query: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190
+ID RS P +++ G+ + + L +++ K +L EH++++AN ++ +G
Sbjct: 1101 LIDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGT 1160
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250
+G N+ G + ++ +PF +A P F KAA+ D+L V + WGK
Sbjct: 1161 MLGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVD 1220
Query: 1251 VGTGGHFDIIYSGEGRTLS--KPVDVYNLLSTPVSS 1284
VGTG F+++++ + L + DVY+ L +S+
Sbjct: 1221 VGTGSQFELLWNQKETGLDDKEETDVYSFLQMVIST 1256
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1335 NDVLRLSNALKKILH--KYSIGQRLSEKDKTTVI-RALYFHPRRNEKLGIEPPDIEVTYH 1391
+DV + L+KI+H Y G +S+ DKT V+ + L FHP++ KLG I V H
Sbjct: 1741 SDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFITVDKH 1800
Query: 1392 PEHQNSRCFSLVREDGSIEDFSYHKCVIGALEIIAPEKAEIYRAKW 1437
+SRCF +V DG+ +DFSY K + L P++AE + K+
Sbjct: 1801 TIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 235/938 (25%), Positives = 408/938 (43%), Gaps = 161/938 (17%)
Query: 16 ILTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAK 64
++ I GI + E K+S EI + + RLG+ +P C +CGA+
Sbjct: 7 VIGSIDFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK---------GAGS 115
+ C GHFG ++ ++H F I ++L S C +C I+ ++ G+
Sbjct: 67 AGE-CPGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHKFEVTGN 125
Query: 116 SRKEQPR-------------VCKYC--VRNPAQW-YPRMRFKLSSKDLSGKTAIIVEIDE 159
+K + R VC +C + P ++ P + ++L KD G +
Sbjct: 126 RKKAKDRLIKEIHKKAKERMVCPHCGSPQFPIKFERPTVYWELR-KDEEGNEYKHRMMPS 184
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSK 218
++ + +K+PD I DA++ +P VL+ V + + PSI E I ++
Sbjct: 185 EVRDRLEKIPDRDLPLIGLDAEK----ARPEWMVLTVLPVPPVT--MRPSITLESGIRAE 238
Query: 219 DAPFLKCFPVTPNNHRVTEVPHAFSHEKKL--FFDNWTRHLKKMVDYRGRDIELSHLVQD 276
D K + N+R+ A + + + +D H+ ++ E S +
Sbjct: 239 DDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINN-----ETSGIPPA 293
Query: 277 CLKISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNI 336
K + S R E R + N+ GKR + R V++ DP I
Sbjct: 294 KHKSGRPLKTLSQRLKGKEGRFRGNLS---------------GKRVNFSARTVISPDPMI 338
Query: 337 KLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK--GELYVCRKGGLVRIRRID 394
+ E+G+P +A L + E++ +N+E+L + EK G YV G RIR ++
Sbjct: 339 SINEVGVPMAIAMELTVPEKVTEFNFEKLRKMV-LNGPEKYPGANYVIDPEGR-RIRLME 396
Query: 395 --------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCC 446
L++G + R L DGD+VL NR PS+H S++A V+V+P + +N C
Sbjct: 397 NNLETVAEKLDIGWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTF-RLNLSVC 455
Query: 447 SPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLM 506
P++ DFDGD ++ ++PQ A+ E L+ + +I+ + G L++ QD ++ +LL
Sbjct: 456 PPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLT 515
Query: 507 EDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLPPDF------- 556
+ +++Q+ MF R PD + + +WSGK +FS+LLP D
Sbjct: 516 REGAYFERTEVEQMLMFAGVDVDRLPEPDKVE-NGVELWSGKTIFSLLLPKDLTIWYRNK 574
Query: 557 ----------------EYTFPSKD----------VYISGGKLISA--EGSSWLRDYEGNL 588
E P ++ YI GKL+S + +++ R+ +G L
Sbjct: 575 LCDEPGRCEALEKLIEEKLIPDEEEVRALAYDGFTYILNGKLLSGAIDKTAYGRE-DGKL 633
Query: 589 FQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
+++ Y ++ FL ++ ++ +G T ++ D L + + +D I +
Sbjct: 634 LDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPTEA------LDRIREII 687
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKH 705
REA++ +N L+ A + + G+ L + E + AAL++A +A K
Sbjct: 688 REAEE-----------RVNRLIEAYRNGELEPIPGKTLEETLESKIMAALAEARDNAGK- 735
Query: 706 VFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSC 765
+A +Y N + M K G++G +L + Q + LG Q +R E
Sbjct: 736 -------VAERYLGMSNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRE--- 785
Query: 766 AAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPG 822
+ GD A+ + V NS+ +GL P E F H++ R+ D A G
Sbjct: 786 RVLTHFKPGDLGARARGF-----VINSYKSGLTPQEYFFHAMGGRE-GLVDTAVRTAQSG 839
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ ++DL YDGTVR+ G IVQF Y +G
Sbjct: 840 YMQRRLINALQDLKVEYDGTVRDPTG-IIVQFRYGEDG 876
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 210 bits (534), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 238/959 (24%), Positives = 396/959 (41%), Gaps = 172/959 (17%)
Query: 20 ISLGISTDTEKEKLSVMEIGA------------VSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ GI + E ++SV E G + + +PR G+ + T+ C +C A +
Sbjct: 17 VQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSRCQTC-AGNMT 75
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKYC 127
C GHFG I + H F++ K+L +C C + P++ +
Sbjct: 76 ECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVS---------PHNPKIKEIV 126
Query: 128 VRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKL-PDDYWG------FIP--- 177
+++ Q PR R GKT D L+K+N++ P+ G + P
Sbjct: 127 MKSRGQ--PRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIR 184
Query: 178 ---------FDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK---- 224
+ Q E++ K + V+S ++V +LK + + E FIL D + +
Sbjct: 185 RTGLDLTAEWKHQNEDSQEK--KIVVSAERVWEILKHI--TDEECFILGMDPKYARPDWM 240
Query: 225 ---CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRG--RDIELS----HLVQ 275
PV P R V F K D+ T L ++ R E S H++Q
Sbjct: 241 IVTVLPVPPLAVRPAVV--MFGAAKNQ--DDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296
Query: 276 DCLKISKLHLDKSSRKDSA---EVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFR 327
+ +K+ + H+ D QK K I I+ ++GKR D R
Sbjct: 297 ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356
Query: 328 MVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGG 386
V+T DPN+++ ++G+P +A+ L E + +N +R+ + + G Y+ R G
Sbjct: 357 TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNG 416
Query: 387 LVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
RID L+ G + R L D D+V+ NR P++H S++ VKVLP S
Sbjct: 417 ----ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ +N C SP++ DFDGD ++ ++PQ++ R E+ + +Q+I Q+ + ++ + Q
Sbjct: 473 TF-RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 531
Query: 497 DSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLP 553
D+LTA + + V ++ Q+ L MF P + P I K +W+GKQ+FS+++P
Sbjct: 532 DTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILK--PRPLWTGKQIFSLIIP 589
Query: 554 ------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY-L 592
PD E P K + K++ G L G+L
Sbjct: 590 GNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICF 649
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
++ D F Q V+ WL G ++ + D + +EI +++A+D
Sbjct: 650 LELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQT------YNEIQQAIKKAKD 703
Query: 653 TCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQN 712
+N + A + E E L Q + + D ++
Sbjct: 704 DV----------INVIQKAHNME-----------LEPTPGNTLRQTFENKVNRILNDARD 742
Query: 713 L----AYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHE 762
A K ++ N+L AM +GSKG+ + + Q C+G Q+ P FR PH
Sbjct: 743 KTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHF 802
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
+ Y P + VENS+L GL P E + H++ R+
Sbjct: 803 IK----------------DDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 846
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLS 877
G + RRL+ M + YDGTVRN+ G Q++Q Y +G E + P LS
Sbjct: 847 AETGYIQRRLIKAMESVMVNYDGTVRNSVG-QLIQLRYGEDGLCGELVEFQNMPTVKLS 904
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 197 bits (500), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 238/923 (25%), Positives = 387/923 (41%), Gaps = 151/923 (16%)
Query: 17 LTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAKD 65
+ GI GI + E K+SV I G E V +PRLG+ P +C +CG
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCG-NT 64
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR----------------KER 109
C GHFG I+ ++H + I + L + C +C ++ K+R
Sbjct: 65 LGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKR 124
Query: 110 QKGAGSSRKE-------QPRVCKYCVRNPAQWYPRMR--FKLSSKDLSGKTAII-VEIDE 159
A E + +VC +C N Q+ ++ + + G + +I E
Sbjct: 125 WPSAARRLTEYVKKTAMKAQVCPHC--NEKQYKIKLEKPYNFYEERKEGVAKLTPSDIRE 182
Query: 160 KLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSK 218
+L +K+PD + +D + +P +L+ V + + PSI E I ++
Sbjct: 183 RL----EKIPDSDVEILGYDP----TTSRPEWMILTVLPVPPIT--IRPSIMIESGIRAE 232
Query: 219 DAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCL 278
D K + N R+ E A + + + D W + Y +I L
Sbjct: 233 DDLTHKLVDIVRINERLKESIDAGA-PQLIIEDLWDLLQYHVATYFDNEIP-------GL 284
Query: 279 KISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKL 338
SK + R + ++ K+ N SG KR D R V++ DPNI +
Sbjct: 285 PPSKHRSGRPLRTLAQRLKGKEGRFRGNLSG----------KRVDFSSRTVISPDPNISI 334
Query: 339 KEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID--- 394
E+G+P +A+ L + ER+ WN E+L I+ G YV R G RRID
Sbjct: 335 DEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDG----RRIDLRY 390
Query: 395 ---------ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLC 445
L G II R L DGDIVL NR PS+H S++A V+VL +N L
Sbjct: 391 VKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLK-GLTFRLNLLV 449
Query: 446 CSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
C P++ DFDGD ++ ++PQ+ A E E++ + K +I + G ++ QD ++ A+LL
Sbjct: 450 CPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLL 509
Query: 506 MEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSK-- 563
+ LL+ + QQ+ + + ++ ++GKQ+ S LP DF + +
Sbjct: 510 TVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQANVS 569
Query: 564 -------------DVYISGGKLISAEGSSWLRDYEGN-----LFQYLIKRYRDK----VL 601
D Y+ I EG + + GN + +LIK Y D+ ++
Sbjct: 570 SGPRLCKNEDCPHDSYVVIKNGILLEGV-FDKKAIGNQQPESILHWLIKEYSDEYGKWLM 628
Query: 602 DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMV 661
D L+ V ++ ++G T+ L D+ L D++ +E + + ++ V
Sbjct: 629 DNLF---RVFIRFVELQGFTMRLEDVSLG----------DDV---KKEIYNEIDRAKVEV 672
Query: 662 DSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD 721
D N + K+ E + G L +L +D + ++A KY
Sbjct: 673 D---NLIQKYKNGE-LEPIPGRTLE------ESLENYILDTLDKLRSTAGDIASKYLDPF 722
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N M + G++G++L + Q + LG Q R + D + A+
Sbjct: 723 NFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDISPEAR 779
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTA 838
+I S SF TGL P E F H+ R+ D A G + RRL+ + DL
Sbjct: 780 GFIYS-----SFRTGLKPTELFFHAAGGREG-LVDTAVRTSQSGYMQRRLINALSDLRAE 833
Query: 839 YDGTVRNAYGNQIVQFSYNIEGT 861
YDGTVR+ YG ++VQ +Y +G
Sbjct: 834 YDGTVRSLYG-EVVQVAYGDDGV 855
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 226/913 (24%), Positives = 391/913 (42%), Gaps = 137/913 (15%)
Query: 16 ILTGISLGISTDTEKEKLSVMEI---------GAVSE--VTNPRLGLPNPTNECSSCGAK 64
I+ G+ G+ + E ++SV I G E V +P+LG+ P +C CG
Sbjct: 5 IIRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVCG-N 63
Query: 65 DRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQ-------------- 110
C GHFG I+ ++H ++ I L S C +C I+ + Q
Sbjct: 64 TLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKL 123
Query: 111 KGAGSSRKEQPRVCKYCVRN---PAQWYPRMRFKLSSK---DLSGKTAIIVEIDEKLSKK 164
+ ++R+ + K ++N P + + KL + +I+ ++ +
Sbjct: 124 RWPSAARRLVEYIKKISIKNLECPHCGEKQFKIKLEKPYNFNEERNGSIVKLSPSEIRDR 183
Query: 165 NKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIR-EEFILSKDAPFL 223
+++PD + +D + S +P +L+ V + + PSI E I ++D
Sbjct: 184 LERIPDSDVELLGYDPK----SSRPEWMILTVLPVPPI--TIRPSITIESGIRAEDDLTH 237
Query: 224 KCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKL 283
K + N R+ E A + + + D W + Y D E+ L + +
Sbjct: 238 KLVDIIRLNERLKESIEAGA-PQLIIEDLWDLLQYHVATYF--DNEIPGLPPAKHRSGRP 294
Query: 284 HLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
+ R E R + N+ GKR D R V++ DPN+ + E+GI
Sbjct: 295 LRTLAQRLKGKEGRFRGNLS---------------GKRVDFSARTVISPDPNLSIDEVGI 339
Query: 344 PCQVAERLQISERLNSWNWERL-SVCISFRLLEKGELYVCRKGGLVRIRRID-------- 394
P +A L + ER+ + N ER+ I+ G YV + G RRID
Sbjct: 340 PYTIARMLTVPERVTNINIERIRQYIINGPDKWPGANYVIKPDG----RRIDLRYVKDRK 395
Query: 395 ----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
++ G ++ R L DGD+VL NR PS+H S++A V+VLP +N L C P++
Sbjct: 396 ELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLP-GRTFRLNLLDCPPYN 454
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSV 510
DFDGD ++ ++PQ+ A E EL+ + K +I + G ++ GQD ++ A+LL +
Sbjct: 455 ADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTT 514
Query: 511 LLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPS------ 562
LL+ ++ + P I ++ ++GKQ+ S+ LP DF + P+
Sbjct: 515 LLTVEEVATILGVTDFVGELGEPAI--LAPKPYYTGKQVISLFLPKDFNFHGPANISKGP 572
Query: 563 ---KD--------VYISGGKLISA--EGSSWLRDYEGNLFQYLIKRYRDKVLDFLY-AAQ 608
KD + I G L+ + + ++ + I+ Y + +L
Sbjct: 573 RACKDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKWLMDNVF 632
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHM-NF 667
++ +L +RG T++L D+ + + +EI ++E + Q VD ++ F
Sbjct: 633 KMFIRFLEMRGFTMTLEDITIPDEA------QNEITTKIKEG-----YSQ--VDEYIRKF 679
Query: 668 LMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
+ R+++ SY ++D + V +I A KY N++ M
Sbjct: 680 NEGQLEPIPGRTIEESLESY--------ILDTLDKLRKVAGEI---ATKYLDPFNNVYIM 728
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
G++G+ L + Q + LG Q R E + + + + GD A+ +
Sbjct: 729 AITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLF---KYGDIAPEARGF---- 781
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVR 844
V+NSF+ GL+P E F H+ R+ D A G + RRL+ + DL YDGTVR
Sbjct: 782 -VKNSFMRGLSPYEMFFHAAGGRE-GLVDTAVKTSQSGYMQRRLINALSDLRIEYDGTVR 839
Query: 845 NAYGNQIVQFSYN 857
+ YG+ IVQ Y
Sbjct: 840 SLYGD-IVQVVYG 851
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 194 bits (492), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 151/580 (26%), Positives = 266/580 (45%), Gaps = 71/580 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + ++G+P +A L E + +N +++ I
Sbjct: 341 IRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNG 400
Query: 373 LLEK-GELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
E G Y+ R+ G L ++++ LE G + R + DGD+V+ NR PS+H S+
Sbjct: 401 PSEHPGAKYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSM 460
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ +KV+P S+ +N SP++ DFDGD ++ ++PQ + R E+ E++ + +Q+++
Sbjct: 461 MGHRIKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSP 519
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVW 542
QS R ++ + QD+L + L + + + + M+ P + P I K + +W
Sbjct: 520 QSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQ--LW 577
Query: 543 SGKQLFSMLLPP----DFEYTFPSKD----------VYISGGKLISA-EGSSWLRDYEGN 587
+GKQLFS+++P F T K+ V I G+L++ L G+
Sbjct: 578 TGKQLFSLIIPDINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGS 637
Query: 588 LFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
+ ++ + D F+ Q V+ WL RG T+ + D S + ++ L
Sbjct: 638 IIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLT------ 691
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
+ SAK+ ++ ++ +E Q ++ + V
Sbjct: 692 ---------------------ISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQV 730
Query: 707 FWDIQNLAYKYG----SKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHE 762
++ A S+DN+L AM AGSKG+ + + Q C+G Q+ R P
Sbjct: 731 LNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGK---RIPFG 787
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL-- 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 788 FQSRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 842
Query: 821 PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YD TVRN+ G+ ++QF+Y +G
Sbjct: 843 TGYIQRRLVKAMEDVSIKYDATVRNSLGD-VIQFAYGEDG 881
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 1066 FLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDC 1125
L + V++G + IKKV + DK +V+ +G + W L D
Sbjct: 1284 MLSEMVLRGIKGIKKVFMRTDDK--------------IPKVTENGGFGVREEW-ILDTDG 1328
Query: 1126 HQIMDM-----IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLI 1180
++++ +D TR+ ++I GI+A L L + IS G + HL I
Sbjct: 1329 VSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAI 1388
Query: 1181 VANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSV 1240
+A+ ++ G + + G+ + + P ++ F + AA D+++G
Sbjct: 1389 LADVMTYRGHLMAITRHGI-----NRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVT 1443
Query: 1241 DALGWGKVPSVGTGG-----HFDIIYSGEGRTLSKPVDV 1274
+ + G++P +GTG + D+I + L +P +V
Sbjct: 1444 ENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNV 1482
Score = 41.2 bits (95), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+P +G + T C +C C GHFG I+ + H F+ + K+L +C C
Sbjct: 54 DPAMGTIDKTQRCQTCSGT-MAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHC 109
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 236/947 (24%), Positives = 386/947 (40%), Gaps = 171/947 (18%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + +LG + C++CG C GHFG+IK + H +L +I +L IC C
Sbjct: 53 VLDNKLGTSDKQAMCTTCGLSIVD-CVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCS 111
Query: 104 T-----------IRKERQKGAGSSRKE--------QPRVCKYCVRNPAQWYPRMRFKLSS 144
T +RK R K + +++ + R K C++ S+
Sbjct: 112 TILLNEEKKQYYLRKMRNKKMDNLQRKSLLKKIFLECRKTKECLKCG-----------ST 160
Query: 145 KDLSGKTAIIVEIDEKLSKKNKKLPDDYWGF---IPFDAQ------QEENSVKPNRKVLS 195
+ K+ I EK K + L D Y + I ++ + + ++ + P +
Sbjct: 161 NGMIKKSGAFKIIHEKYKGKTESLQDYYALYDDAIKYNPEMKSHIKKAQDDLNPLVALNL 220
Query: 196 CKQVSYL---LKDVDPSIR--EEFILSKD-APFLKCFPVTPNN-----------HRVTEV 238
K++SY + ++DP I E IL+ P + P P + +++E+
Sbjct: 221 FKKISYQDIEIMNMDPVIGRPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEI 280
Query: 239 PHAFSH--------EKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSR 290
H H E ++W Y D+ L +K +K S R
Sbjct: 281 LHINEHIRSNVDRAEMSAIMEDWDYLQASCAIYINSDVPGLPLQ---MKPTKAVRGLSQR 337
Query: 291 KDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAER 350
R + N+ GKR D R V++ DPN+ + E+ +P +A
Sbjct: 338 LKGKTGRFRGNLS---------------GKRVDFSGRTVISPDPNLNIDEVAVPQLIALT 382
Query: 351 LQISERLNSWNWERLS-VCISFRLLEKGELYVCRKGGLV-------RIRRIDALELGDII 402
+ ER+ +N ERL I+ G Y+ G+ R + L++GDI+
Sbjct: 383 MTYPERVTDYNIERLQKYVINGPDRHPGANYIIYADGVKKWLKFGNREKFAAELKIGDIV 442
Query: 403 YRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYI 462
R + DGDI+L NR PS+H S+++ +V+P ++ N C+P++ DFDGD ++ ++
Sbjct: 443 ERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTL-RFNECVCTPYNADFDGDEMNIHL 501
Query: 463 PQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM 522
PQ AR E T L+ + LI ++G L++ QD LTA++L+ + + +
Sbjct: 502 PQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAF---YERYRFAL 558
Query: 523 FCPH--------RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEY----TFPSKD-VYISG 569
C H P I K + +W+GKQ+F +LL P + F ++ Y
Sbjct: 559 MCTHFADANEHIDLPPPAILKPVE--LWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKN 616
Query: 570 GKLISAEGSSWLRDYE-------------GN---LFQYLIKRYRDKVLDFLYAAQEVLC- 612
+ +G + R+ E GN LF L++ + + LC
Sbjct: 617 LYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCA 676
Query: 613 EWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAK 672
+L +G ++ + D+ A +K RE +T +++ V FL K
Sbjct: 677 RFLGDQGFSIGIPDIKPAEDLDRKK----------REIIETA-YKKCAV-----FL---K 717
Query: 673 DSESTRSLQ-----GEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAM 727
D ES SLQ ++E + + LSQ D K D+ N NS L M
Sbjct: 718 DYESG-SLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNY--------NSPLIM 768
Query: 728 FKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSA 787
GSKG+ + + Q C+G Q R P+ + + AK+
Sbjct: 769 GLCGSKGSNINIAQMICCVGQQIVNGT---RIPNGFTNRTTPHFK-----HFAKNPKSKG 820
Query: 788 VVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRN 845
V NSF TG+ P E F H++ R+ G + RRLM + DL T YD TVR+
Sbjct: 821 FVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRD 880
Query: 846 AYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSALDQP 892
+ G IVQF Y +G E D+PV L A ++ ++P
Sbjct: 881 SIGG-IVQFIYGDDGLDPAGMEAKDRPVDFLRAMMSVKSTRQCRNEP 926
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+ ++ ++ ++ G +I H++++A+ +S GE +G+ G+A ++
Sbjct: 1329 GIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKE----- 1383
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
S + A F AA D++ G + + G V +GTG
Sbjct: 1384 SVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTG 1428
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 160/574 (27%), Positives = 270/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTE-FARRTVYP 406
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 407 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL S+ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 467 RVLNYSTF-RLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 526 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 583
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 584 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 643
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 644 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 684
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 685 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 741
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 742 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 789
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 790 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 842
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 843 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 875
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++AA G D ++G + + G++
Sbjct: 1412 MAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPA 1466
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1467 GTGC-FDLLLDAE 1478
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 214/943 (22%), Positives = 386/943 (40%), Gaps = 170/943 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIG------------AVSEVTNPRLGLPNPTNECSSCGAKDRK 67
+ G+ + E +++SV E G + + +PR G+ T C +C A +
Sbjct: 21 VQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTC-AGNMT 79
Query: 68 ACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC------------PKCKTIRKERQKGAGS 115
C GHFG I+ + H FL K+L +C PK K I K G
Sbjct: 80 ECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILA---KSKGQ 136
Query: 116 SRKEQPRVCKYCV-RNPAQWYPRMRFKLSSKDLSGKTAIIVE--------IDEKLSKKNK 166
+K V C +N + M K + G + E ++ +
Sbjct: 137 PKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGL 196
Query: 167 KLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPFLK-- 224
+L + W + D+Q++ + +LS ++V + K + S E F+L + + +
Sbjct: 197 ELYAE-WKHVNEDSQEK-------KILLSPERVHEIFKRI--SDEECFVLGMEPRYARPE 246
Query: 225 -----CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR------DIELSHL 273
PV P + R V + + D+ T L +V + + +H+
Sbjct: 247 WMIVTVLPVPPLSVRPAVVMQGSARNQ----DDLTHKLADIVKINNQLRRNEQNGAAAHV 302
Query: 274 VQDCLKISKLH--------LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDC 325
+ + +K+ + H L R R K++ ++ ++GKR D
Sbjct: 303 IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS 362
Query: 326 FRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRK 384
R V+T DPN+ + ++G+P +A + +E + +N +RL + + G Y+ R
Sbjct: 363 ARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD 422
Query: 385 GGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLP 434
G RID L+ G + R + DGDIV+ NR P++H S++ V++LP
Sbjct: 423 NG----DRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 435 ISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSL 494
S+ +N +P++ DFDGD ++ ++PQ++ R E+ EL + + ++ QS R ++ +
Sbjct: 479 WSTF-RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGI 537
Query: 495 GQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDSVWSGKQLFSML 551
QD+LTA + V L ++ L MF + P I K +W+GKQ+FS++
Sbjct: 538 VQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILK--PRPLWTGKQIFSLI 595
Query: 552 LP------------PDFEYTFPSKDVYISGGKLISAEGS--------SWLRDYEGNLFQY 591
+P PD E + P K + K++ G L G+L
Sbjct: 596 IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 655
Query: 592 LIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
+ Y+ Q V+ WL + G T+ + D S + +I +++A
Sbjct: 656 SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD------SIADSKTYQDIQNTIKKA 709
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH---LSYEKQRSAALSQASVDAFKHVF 707
+ + +++ +H N L + ++ + + L+ + ++ + +Q S+ +
Sbjct: 710 KQ--DVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEY---- 763
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPH 761
N+ +M +G+KG+ + + Q +G Q+ P F+ PH
Sbjct: 764 --------------NNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPH 809
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNAD 819
+ Y P + VENS+L GL P E F H++ R+
Sbjct: 810 FIK----------------DDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVK 853
Query: 820 LP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YD TVRN+ NQ+VQ Y +G
Sbjct: 854 TAETGYIQRRLIKSMESVMVKYDATVRNSI-NQVVQLRYGEDG 895
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D R+ ++I GI+A + L IS G + HL ++ +T++ G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ Q + P ++ F ++AA G D ++G + + G++
Sbjct: 1412 MAITRHGVNRQD-----TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPA 1466
Query: 1252 GTGGHFDIIYSGE 1264
GTG FD++ E
Sbjct: 1467 GTGC-FDLLLDAE 1478
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 190 bits (483), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 159/574 (27%), Positives = 270/574 (47%), Gaps = 76/574 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPNI + E+G+P VA L ER+N+ N +RL+ + R +
Sbjct: 348 LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTE-FARRTVYP 406
Query: 377 GELYVCRKGG------LVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
Y+ G L+R R L +GD++ R + +GD+VL NR P++H S++ V
Sbjct: 407 SANYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRV 466
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VL ++ +N C +P++ DFDGD ++ ++PQ++ + EL E++ + K ++
Sbjct: 467 RVLNYNT-FRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAP 525
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFS 549
+ + QDSL ++ L + L +Q + ++ L P I K +W+GKQ+FS
Sbjct: 526 CMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLWQLPIPAILK--PRPLWTGKQVFS 583
Query: 550 MLLP-------PDFEYTFPSKD--VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRY-RD 598
++LP P FP D V I G+L+ S + G+L + + D
Sbjct: 584 LILPEVNHPATPQDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHGSD 643
Query: 599 KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+V F+ Q V +L G +V + D S + LR+ D
Sbjct: 644 EVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDT-------------LRQMND------ 684
Query: 659 LMVDSHMNF--LMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLA 714
++V + N + +A ++ + G L S+E ++AL++ +A K +++
Sbjct: 685 VLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVR--- 741
Query: 715 YKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH---SLAPLSFR---FPHELSCAAW 768
+ NS M +AGSKG L + Q ++ +G Q+ S P FR PH
Sbjct: 742 -----RTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPH------- 789
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTR 826
D E ++ + ++ GL P E F H++ R+ G L R
Sbjct: 790 --FMLDDYGETSR-----GMANRGYVEGLKPHEFFFHTMAGREGLIDTAVKTSDTGYLQR 842
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+L+ + D+ AYDGTVRNA ++++QF Y +G
Sbjct: 843 KLIKALEDVHAAYDGTVRNA-NDELIQFMYGEDG 875
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 190 bits (482), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 222/950 (23%), Positives = 403/950 (42%), Gaps = 167/950 (17%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSV--MEIGAVSE--------VTNPRLGLPNPTNECS 59
+ P + + GI E +++SV +E V E + +PR G+ + C
Sbjct: 8 FQAPLRTVCRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVIDRRGRCM 67
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKE 119
+C A + C GHFG ++ + H FL+ K+L +C C + + K
Sbjct: 68 TC-AGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLID---------KT 117
Query: 120 QPRVCKYCVRNPAQWYPRMRFKL-----SSKDLSGKTA-----IIVEIDEKLSKKNKKLP 169
PRV + P+ R L SK + A + ++D+ +++ KK+P
Sbjct: 118 NPRVMDILKKTSGN--PKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDPMNE-GKKVP 174
Query: 170 DDYWGFIP--------FDAQQEEN---SVKPNRKVLSCKQVSYLLKDVDPSIREEFILSK 218
+ P +A+ ++N + + +L+ ++V + K + + + ++
Sbjct: 175 AGCGRYQPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFKQI--TDEDILVIGM 232
Query: 219 DAPFLK-------CFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGR----- 266
D F + PV P R V F K D+ T L ++ +
Sbjct: 233 DPQFARPEWMICTVLPVPPLAVRPAVV--TFGSAKNQ--DDLTHKLSDIIKTNQQLQRNE 288
Query: 267 -DIELSHLVQDCLKISKLH-----------LDKSSRKDSAEVRQKKNIDISNSSGLRWIK 314
+ +H++ D +++ + H L +++K ++ K + G I+
Sbjct: 289 ANGAAAHVLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQ-RLKGKEGR--IR 345
Query: 315 DVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLL 374
++GKR D R V+T DPN+ + +G+P +A+ L E + +N ++L ++
Sbjct: 346 GNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDT 405
Query: 375 E-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIHPH 423
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 406 QYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKM 461
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++ VK+LP S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +QLI
Sbjct: 462 SMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLI 520
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISKDS 540
Q+ + ++ + QD+L A ++ + + + M L M+ P + P I K
Sbjct: 521 TPQANKPVMGIVQDTLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILK--PKP 578
Query: 541 VWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGSSW 580
+W+GKQ+FS+++P PD E + P K V I G+L+S S
Sbjct: 579 LWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKT 638
Query: 581 LRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+ GNL + ++ Y+ Q V+ WL G T+ + D +A S
Sbjct: 639 VGKSAGNLLHVVALELGHEIAANFYSHIQTVINAWLLREGHTIGIGDT-IADQSTYL--- 694
Query: 640 MDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQA 698
+I +R+A QD + + + + ++ + + L+ + R+ + +Q
Sbjct: 695 --DIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQK 752
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA---PL 755
S+ F N+ +M +GSKG+ + + Q C+G Q+ P
Sbjct: 753 SLSEF------------------NNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRIPF 794
Query: 756 SFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS 812
FR PH + D +K + VENS+L GL P E F H++ R+
Sbjct: 795 GFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTPSEFFFHAMGGREG 840
Query: 813 SFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M + YDGTVRN+ Q+VQ Y +G
Sbjct: 841 LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA-QMVQLRYGEDG 889
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 265/582 (45%), Gaps = 71/582 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DP I + E+G+P +A L E + +N ERL + +
Sbjct: 347 IRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYG 406
Query: 373 LL----EKGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPP 418
+ G Y+ R G +R+D LELG + R L DGD VL NR P
Sbjct: 407 PHPPPGKTGAKYIIRDDG----QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQP 462
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ ++++P S+ +N SP++ DFDGD ++ ++PQ+ R E+ EL+ +
Sbjct: 463 SLHKMSIMGHRIRIMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 521
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLME-DSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
K +++ Q+ R ++ + QD+L + + D+ + + M L + P +
Sbjct: 522 PKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILK 581
Query: 538 KDSVWSGKQLFSMLLP------------PDFEYTFPS---KDVYISGGKLISAE-GSSWL 581
+W+GKQ+F++++P D E F + V I G+L++ L
Sbjct: 582 PRPLWTGKQVFNLIIPKQINLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTL 641
Query: 582 RDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640
G+L + + D FL Q ++ WL G T+ + D +A S KI
Sbjct: 642 GTSNGSLVHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFTIGIGDT-IADSSTMEKI-- 698
Query: 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASV 700
+ N + + D F D E R+++ ++E + + L++A
Sbjct: 699 ---------NETISNAKTAVKDLIRQFQGKELDPEPGRTMRD---TFENRVNQVLNKARD 746
Query: 701 DAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFP 760
DA + A K ++ N+L AM AGSKG+ + + Q + C+G Q+ R P
Sbjct: 747 DA--------GSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK---RIP 795
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
D ++ + VENS+L GL P E F H++ R+
Sbjct: 796 FGFDGRTLPHFTKDDYGPESRGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 850
Query: 821 --PGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
G + RRL+ M D+ YDGTVRN+ G+ ++QF Y +G
Sbjct: 851 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 891
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184
CH+ +D T +H + GI+A + L L IS G + HL I+ +T
Sbjct: 1339 CHEDVDPKRTTSNH---LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1395
Query: 1185 LSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244
++ G + + G+ + + + P ++ F + AA D L+G + +
Sbjct: 1396 MTYRGHLMAITRHGI-----NRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIM 1450
Query: 1245 WGKVPSVGTG 1254
G++ +GTG
Sbjct: 1451 LGQLAPIGTG 1460
Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 20 ISLGISTDTEKEKLSVMEI----------GAVSEVTNPRLGLPNPTNECSSCGAKDRKAC 69
+ GI + E ++SV+ + V +++ RLG + +C +C A + C
Sbjct: 18 VQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTIDRKVKCETCMA-NMAEC 76
Query: 70 EGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK 111
GHFG+++ + H F+ + ++ +C C I + ++
Sbjct: 77 PGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEE 118
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 155/578 (26%), Positives = 268/578 (46%), Gaps = 79/578 (13%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
++GKR D R V+TGDPN+ L E+G+P +A+ L E + +N +L + E
Sbjct: 346 LMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEH 405
Query: 377 -GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G Y+ R G RID L G + R + DGD+V+ NR PS+H S+
Sbjct: 406 PGAKYIIRDTG----ERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSM 461
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ ++V+P S+ +N SP++ DFDGD ++ ++PQ+ R E+ E+ + KQ+++
Sbjct: 462 MGHRIRVMPYSTF-RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSP 520
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP--HRFLSPDIFKISKDSVWS 543
QS + ++ + QD+L L+ + + ++ P L P + + +W+
Sbjct: 521 QSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVI-LKPKVLWT 579
Query: 544 GKQLFSMLLPPDFE---------YTFPSKD-VYISGGKLI-SAEGSSWLRDYEGNLFQYL 592
GKQ+ S+++P + P+ + I G++I + +G L +
Sbjct: 580 GKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTI 639
Query: 593 IKRYRDKVLD-FLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
K ++ F Q V+ WL G ++ + D + + M E+ ++EA+
Sbjct: 640 WKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADT------MKEVTRTVKEAR 693
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQ 711
+ + D+ N L E +L+ S+E + S L+QA +A +
Sbjct: 694 RQV--AECIQDAQHNRL----KPEPGMTLRE---SFEAKVSRILNQARDNAGR------- 737
Query: 712 NLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQ---HSLAPLSFRF---PHELS 764
+ ++ KD N++ M AGSKG+ + + Q S C+G Q P F++ PH
Sbjct: 738 --SAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPH--- 792
Query: 765 CAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--G 822
D++ ++ +I ENS+L GL P E F H++ R+ G
Sbjct: 793 ------FPKDDDSPESRGFI-----ENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 841
Query: 823 TLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ RRL+ M D+ YDGTVRNA G+ I+QF+Y +G
Sbjct: 842 YIQRRLVKAMEDVMVRYDGTVRNAMGD-IIQFAYGEDG 878
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H FLS I K+L +C
Sbjct: 52 VGGLLDPRLGTIDRQFKCQTCG-ETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCW 110
Query: 101 KCKTIR 106
C ++
Sbjct: 111 NCGKLK 116
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D TR++ ++ GI+A L L + I G + HL ++ + +++ G
Sbjct: 1328 VDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHL 1387
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ + + + ++ F + AA +G D+ +G + + G++ +
Sbjct: 1388 MAITRHGI-----NRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPM 1442
Query: 1252 GTGGHFDI 1259
GTG FDI
Sbjct: 1443 GTGA-FDI 1449
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 173/636 (27%), Positives = 285/636 (44%), Gaps = 88/636 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN+ L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIH 421
E G YV R G RID L+ G + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDNG----DRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
+++ QS + + + QD+L + + Q+ + + P +P I K
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILK--P 568
Query: 539 DSVWSGKQLFSMLLPPDFE---------YTFPSKD--VYISGGKLISAEGSSWLRDYEGN 587
+WSGKQL SM +P Y P + + I G + + G
Sbjct: 569 KPLWSGKQLLSMAIPSGIHLQRFDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGG 628
Query: 588 LFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYG 646
L + + +V L+ Q+V+ WL G ++ + D +A R+I D I
Sbjct: 629 LIHVVTREKGPEVCAKLFGNIQKVVNYWLLHNGFSIGIGDT-IADEKTMREI-TDAIALA 686
Query: 647 LREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHV 706
++ ++ Q L++AK + R S+E L++A A +
Sbjct: 687 KKKVEEVTKEAQAN-------LLTAKHGMTLRE------SFEDNVVRYLNEARDKAGRSA 733
Query: 707 FWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----P 760
++++L N++ M AGSKG+ + + Q S C+G Q ++F F P
Sbjct: 734 EVNLKDL--------NNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLP 785
Query: 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL 820
H D + +K + VENS+L GL P E F H++ R+
Sbjct: 786 H---------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 831
Query: 821 P--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
G + RRL+ + D+ YDGT RN+ GN I+QF Y +G I Q + ++
Sbjct: 832 AETGYIQRRLVKALEDIMVHYDGTTRNSLGN-IIQFVYGEDGMD--AAHIEKQSIDTIPG 888
Query: 879 CAIS-EAAYSALDQPISLLETSPLLNLKNVLECGSK 913
++ E Y I LL + L+ N+LE G++
Sbjct: 889 SDLAFEKRYR-----IDLLNPNYALD-PNLLESGTE 918
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 41 VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICP 100
V + +PRLG + +C +CG + C GHFG I+ + H F+S I K+ +C
Sbjct: 50 VGGLNDPRLGSIDRNFKCQTCG-EGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCM 108
Query: 101 KC 102
C
Sbjct: 109 HC 110
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 155/592 (26%), Positives = 269/592 (45%), Gaps = 90/592 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPN+ + +G+P +A+ L E + +N ++L ++
Sbjct: 344 IRGNLMGKRVDFSARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRG 403
Query: 373 LLE-KGELYVCRKGGLVRIRRIDA----------LELGDIIYRPLTDGDIVLINRPPSIH 421
+ G Y+ R+ G R+D L+ G + R + DGDI++ NR P++H
Sbjct: 404 DTQYPGAKYIIRENGA----RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLH 459
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++ VK+LP S+ +N SP++ DFDGD ++ ++PQ++ R E+ E+ + +Q
Sbjct: 460 KMSMMGHRVKILPWSTF-RMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQ 518
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH---RFLSPDIFKISK 538
LI Q+ + ++ + QD+L A ++ + V + M L M+ P + P I K
Sbjct: 519 LITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILK--P 576
Query: 539 DSVWSGKQLFSMLLP------------PDFEYTFPSK-------DVYISGGKLISA-EGS 578
+W+GKQ+FS+++P PD E + P K V I G+L+S S
Sbjct: 577 KPLWTGKQVFSLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCS 636
Query: 579 SWLRDYEGNLFQYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ GNL + ++ Y+ Q V+ WL G T+ + D + + +
Sbjct: 637 KTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTIGIGD------TIADQ 690
Query: 638 ILMDEIFYGLREA-QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALS 696
+I +R+A QD + + + + ++ + + L+ + R+ + +
Sbjct: 691 ATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSA 750
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLA--- 753
Q S+ F N+ +M +GSKG+ + + Q C+G Q+
Sbjct: 751 QKSLSEF------------------NNFKSMVVSGSKGSKINISQVIACVGQQNVEGKRI 792
Query: 754 PLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
P FR PH + D +K + VENS+L GL P E F H++ R
Sbjct: 793 PFGFRHRTLPHFIK---------DDYGPESKGF-----VENSYLAGLTPSEFFFHAMGGR 838
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
+ G + RRL+ M + YDGTVRN+ Q+VQ Y +G
Sbjct: 839 EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLA-QMVQLRYGEDG 889
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 10 LEVPSGILTGISLGISTDTEKEKLSV--MEIGAVSE--------VTNPRLGLPNPTNECS 59
+ P I++ + GI E +++SV +E V E + +PR G+ + C
Sbjct: 8 FQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCM 67
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+C A + C GHFG ++ + H FL+ K+L +C C
Sbjct: 68 TC-AGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYC 109
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 157/594 (26%), Positives = 264/594 (44%), Gaps = 78/594 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ ++ +P ++A+ L ER+ + N + L CI + + G
Sbjct: 352 GKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Query: 378 ELYVC-RKGGLVRIRRI-------DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV R+ G R R D L++GDI+ R L D D+VL NR PS+H S++A
Sbjct: 412 ANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHL 471
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
VKV P ++ N C P++ DFDGD ++ ++PQ A+ E EL+ + L++ ++G
Sbjct: 472 VKVRPWRTL-RFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGE 530
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMF----CPHRFLSPDIFKISKDSVWSGK 545
+++ QD +TAA+LL L + + + H L P I +W+GK
Sbjct: 531 PIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAI-IKPRCLWTGK 589
Query: 546 QLFSMLLPPD-FEYTFPSKDVYISGGKLISA--------EGSSWLRDYE----------- 585
Q+F++L+ P+ F + D I + +G +R+ E
Sbjct: 590 QVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVDKSVV 649
Query: 586 -----GNLFQYLIKRYRD-KVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKIL 639
+LF +++ Y + + + ++ +L RG ++ + D+ S+K +
Sbjct: 650 GDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSLSSQKEI 709
Query: 640 MDEIFYGLREAQDTCNFQQLMVDSHMNFLMS-AKDSESTRSLQGEHLSYEKQRSAALSQA 698
+ Y + +F+M AK + + + E + S+ LS+
Sbjct: 710 LVNKAYATSD----------------DFIMQYAKGILECQPGMDQEATLEAKISSTLSK- 752
Query: 699 SVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR 758
V D+ + NS L M GSKG+ + + Q C+G Q R
Sbjct: 753 -------VRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGK---R 802
Query: 759 FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA 818
P + AK + V NSF +GL P E H+++ R+
Sbjct: 803 VPDGFQDRSLPHFHKNSKHPLAKGF-----VSNSFYSGLTPTEFLFHAISGREGLVDTAV 857
Query: 819 DLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGD 870
G ++RRLM + DL +AYDGTVR++ + +VQF Y +G PT GD
Sbjct: 858 KTAETGYMSRRLMKSLEDLSSAYDGTVRSS-NSDVVQFVYGDDGLD-PTYMEGD 909
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 49 LGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+G N C++CG + C GHFG++K + H + +L +IC C ++
Sbjct: 57 MGTSNKQINCATCG-ESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSV 112
Score = 41.6 bits (96), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 1135 TRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGL 1194
T++ +++ GI+A ++ + ++ G + P H++++ + ++ GE +G+
Sbjct: 1258 TKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGI 1317
Query: 1195 NAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTG 1254
G+A + S A F AA A D+++G + + GK+ +GT
Sbjct: 1318 TRFGVAKMK-----DSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGT- 1371
Query: 1255 GHFDIIYSGEGRTLSKPVDVYNLLSTP 1281
F +I E KP ++ L TP
Sbjct: 1372 NVFQLIRRTEEEEEQKPKEL--LFDTP 1396
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 285/633 (45%), Gaps = 82/633 (12%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V++GDPN++L ++G+P +A+ L E + +N +RL+ +
Sbjct: 336 IRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNG 395
Query: 373 LLEK-GELYVCRKGGLVRIRRID---ALELGDI-------IYRPLTDGDIVLINRPPSIH 421
E G YV R G RID + GDI + R + D D VL NR PS+H
Sbjct: 396 PNEHPGAKYVIRDSG----DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLH 451
Query: 422 PHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S++A VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL++L A+ Q
Sbjct: 452 KMSMMAHRVKVIPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQ 510
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDS 540
+++ QS + + + QD+L L + Q+ + + P + P I
Sbjct: 511 IVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKP 570
Query: 541 VWSGKQLFSMLLPPDFEYT--------FPSKD---VYISGGKLISAEGSSWLRDYEGNLF 589
+WSGKQ+ S+ +P KD + I G + + G L
Sbjct: 571 LWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLI 630
Query: 590 QYLIKRYRDKVLDFLYA-AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLR 648
+ + +V L+ Q+V+ WL G + + D + + M EI +
Sbjct: 631 HVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGD------TIADGPTMREITETIA 684
Query: 649 EAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
EA+ + ++ N L++AK + R S+E L++A A +
Sbjct: 685 EAKKKV--LDVTKEAQAN-LLTAKHGMTLRE------SFEDNVVRFLNEARDKAGRLAEV 735
Query: 709 DIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRF-----PHE 762
++++L N++ M AGSKG+ + + Q S C+G Q ++F F PH
Sbjct: 736 NLKDL--------NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPH- 786
Query: 763 LSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP- 821
D + +K + VENS+L GL P E F H++ R+
Sbjct: 787 --------FSKDDYSPESKGF-----VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 833
Query: 822 -GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSACA 880
G + RRL+ + D+ YD T RN+ GN ++QF Y +G I Q SL
Sbjct: 834 TGYIQRRLVKALEDIMVHYDNTTRNSLGN-VIQFIYGEDGMD--AAHIEKQ---SLDTIG 887
Query: 881 ISEAAYSALDQPISLLETSPLLNLKNVLECGSK 913
S+AA+ + + LL T L+ ++LE GS+
Sbjct: 888 GSDAAFEKRYR-VDLLNTDHTLD-PSLLESGSE 918
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 27 DTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPY 86
+T E + +IG +++ PRLG + +C +C + C GHFG I + H
Sbjct: 39 ETMDETQTRAKIGGLND---PRLGSIDRNLKCQTC-QEGMNECPGHFGHIDLAKPVFHVG 94
Query: 87 FLSDIAKLLNSICPKC 102
F++ I K+ +C C
Sbjct: 95 FIAKIKKVCECVCMHC 110
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 158/616 (25%), Positives = 268/616 (43%), Gaps = 114/616 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+K+ E+ +P +VA+ L E+ +N ++L + +S + G
Sbjct: 367 GKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPG 426
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++ R++ L +GD++ R + DGDIVL NR PS+H S+++
Sbjct: 427 ANYLLKQNESAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSILSHY 486
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 487 AKIRPWRTF-RLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPKSGE 545
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS-----PDIFKISKDSVWSG 544
+++ QD +T ++L+ + QL + P IFK +W+G
Sbjct: 546 PIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKPV--MLWTG 603
Query: 545 KQLFSMLLPPDFE-------------YTFPSKD-----------VYISGGKLISA--EGS 578
KQ+FS+L+ P+ + YT P+K V I G +++S + S
Sbjct: 604 KQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNEMSPNDGFVIIRGSQILSGVMDKS 663
Query: 579 SWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRK 637
+ + ++F +++ Y D+ + + ++ +L RG ++ ++D+ S +K
Sbjct: 664 TLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSDLKQKK 723
Query: 638 ILMDEIFY------------GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
LM E Y G E Q CN +Q + + G L
Sbjct: 724 ELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTL-----------------EAKIGGLL 766
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
S ++ + +D+ N+ L M GSKG+ L + Q
Sbjct: 767 SKVREEVGEICINELDSA------------------NAPLIMATCGSKGSTLNVSQMVAV 808
Query: 746 LGLQ---HSLAPLSFR---FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNP 799
+G Q + P F+ PH T+ +K+ V NSF +GL P
Sbjct: 809 VGQQIISGNRVPDGFQDRSLPH--------------FTKNSKTPQSKGFVRNSFFSGLTP 854
Query: 800 LECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
E HS++ R+ G ++RRLM + DL YD TVRN+ N IVQF+Y
Sbjct: 855 PEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRNS-SNGIVQFTYG 913
Query: 858 IEGTSTPTGEIGDQPV 873
+G E +PV
Sbjct: 914 GDGLDPFDMEGDARPV 929
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 48 RLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRK 107
++G+ + NEC++C + +C GHFG IK + H + ++L IC C +
Sbjct: 57 KMGISSNANECATCHG-NLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLL 115
Query: 108 ERQ 110
+ Q
Sbjct: 116 DEQ 118
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
D + T++ ++I GI+A + ++ +S G ++ P H+ ++ + ++ G
Sbjct: 1306 DGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKG 1365
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
E +G+ GL+ R S A F A+ D ++G + + G+
Sbjct: 1366 EVLGITRFGLSKMR-----DSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTM 1420
Query: 1250 SVGTGGHFDIIYS 1262
++GTG F ++ S
Sbjct: 1421 NIGTGA-FKLVNS 1432
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 215/900 (23%), Positives = 374/900 (41%), Gaps = 140/900 (15%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + RLG+ ECS+CG + C GHFG IKF + H +L + +L+ IC +C
Sbjct: 61 VIDKRLGVTESHLECSTCGETALR-CPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCN 119
Query: 104 TI---RKERQKGA------GSSRKEQPR-VCKYCVRNPAQWYPRMRFKLSSKDLSGKTAI 153
+ + E++ A G R + R +CK + Y G A
Sbjct: 120 KLLVYKNEKEIAALIKNKQGKQRFAEIRSICKKVTHCQKENYG-----------CGTPAH 168
Query: 154 IVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREE 213
+ ID K+N + + P E + RK L D+ S+ +E
Sbjct: 169 KISID----KRNGNI---FLLAEPVKRTDEYDETGETRKRPQQILTPQLCYDILKSVSDE 221
Query: 214 ------FILSKDAP---FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYR 264
F +K P + FPV P R + S D+ H K++D
Sbjct: 222 DCIIMGFDPAKSRPEDMIILNFPVPPVQVRPSIRAEILSSPT---MDDDLTH--KLIDII 276
Query: 265 GRDIELSHL-----------VQDCLKISKLHLDKSSRKDSAEV--RQKKNIDISNSSGLR 311
+ L + + D + +LH+ D A + Q+KN ++ S R
Sbjct: 277 KSNENLKNTKGDGSLIKYTSINDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSER 336
Query: 312 W------IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
I+ ++GKR D R V+T DPNI L E+G+P +A+ L E + N E L
Sbjct: 337 LRGKEGRIRGNLMGKRVDMSARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYL 396
Query: 366 SVCI-SFRLLEKGELYVCR---------KGGLVRIRRID---ALELGDIIYRPLTDGDIV 412
+ + + + + G +V + G + ++ +D +L+ GDI+ R L DGDIV
Sbjct: 397 TQLVKNGKRVYPGANFVIKHVIDAEGNESGHIYHLKYVDKPISLKPGDIVKRQLIDGDIV 456
Query: 413 LINRPPSIHPHSLIALTVKVLPISSVVT--INPLCCSPFHGDFDGDCLHGYIPQAIGARV 470
+ NR PS+H S++ V+P ++++T +N P++ DFDGD ++ ++PQ+I
Sbjct: 457 IFNRQPSLHKLSMMGHKCHVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTAT 516
Query: 471 ELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS 530
E+ + ++ ++ + + QD+L +++ E + + + M + L
Sbjct: 517 EILLIANASRRFVSPATSNIAIKAKQDTLMGSYVQTEPDMEIDWRDAMSILMSTSVK-LD 575
Query: 531 PDIFKISKDSVWSGKQLFSMLLPP---------DFEYTFPSKDVYISGGKLISAEGSSWL 581
DI K SGK L+S ++P D E+ K+ ++ G L +E SS L
Sbjct: 576 NDIPKYQN---VSGKFLYSQIIPEGLNITKRKNDKEFQLKIKNGELTDGTLGKSEISSIL 632
Query: 582 RDYEGNLFQYLIKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMD 641
+ FQY K + +F+ AQ ++ ++L G TVS+ D + ++
Sbjct: 633 QRI---WFQYGSKETQ----EFIDDAQRMILQFLMRYGYTVSIKDTVIGEK-------VN 678
Query: 642 EIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVD 701
+ Y L E + + + ++M+ KD+ + LQ +
Sbjct: 679 QYIYDLIETKRKETLAFITEYDNDPYVMT-KDAFEIK-LQ-------------------E 717
Query: 702 AFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPH 761
K V +I+N + K++ + +GS G + Q + C+G + R
Sbjct: 718 NLKSVQDEIKNTVMRNFDKNSGIFIAISSGSSGEPMNAGQIAGCIG---QVIVEGKRIQI 774
Query: 762 ELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFS---DNA 818
+ D++ ++ + NSF+ GL P E F + R+ + A
Sbjct: 775 RFNGRTLPMFPKFDDSAFSRGF-----CRNSFIEGLGPFEFFFQVMAGREGIINTAIKTA 829
Query: 819 DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGSLSA 878
D G + R+L+ + D+ YDGTVRNA G +++ Y G +T DQ + +SA
Sbjct: 830 D-TGYIQRKLVKMLEDIKQEYDGTVRNANG-KLISCVYGDNGINTENQV--DQKIDLISA 885
Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID R+ ++I + YG++A F+ +AI +G +H+ I+A+ ++ G
Sbjct: 1334 IDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITHMGGL 1393
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ +N G + + PF +A F + AA G D+++ + G + +
Sbjct: 1394 IPVNRHG-----ANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRSVSARIMVGALING 1448
Query: 1252 GTGGHFDII 1260
GTG FD++
Sbjct: 1449 GTGC-FDLL 1456
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 151/573 (26%), Positives = 259/573 (45%), Gaps = 75/573 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR + R V++ DP + L E+G+P +VA + + +N N ER + + G
Sbjct: 387 GKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPG 446
Query: 378 ELYVCRKGGL-VRIRR------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R G VR+ + +E G + R L DGDI++ NR PS+H S++A V
Sbjct: 447 ANYVTRPDGRRVRVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEV 506
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
V+P + +N + C P++ DFDGD ++ + Q AR E L+ + +Q+++ + G N
Sbjct: 507 VVMPYKTF-RLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGEN 565
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQ-LQMFCPHRFLSPDIFKISKDSVWSGKQLFS 549
++ QD ++ +LL D+ + Q L+ + D W+G Q+FS
Sbjct: 566 IIGAIQDHISGTYLLTNDNPRFNETQASDLLRQTRIDELPAAAGTDEDGDQYWTGHQIFS 625
Query: 550 MLLPPD--FEYTFPSKD-VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRYRD-KVLDFL 604
LLP D E+T + D V I G+L+ + +Y + + K + + + F+
Sbjct: 626 ELLPDDLSLEFTGTTGDTVVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFI 685
Query: 605 YAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH 664
+ + G ++ + D +++ + R +DE Q + Q +++++
Sbjct: 686 NEVASLAMRSIMHFGFSIGIDDETVSTEARER---IDEAI------QSAYDRVQELIETY 736
Query: 665 MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDN 722
N + SL G + + E + L +A A ++A + +DN
Sbjct: 737 ENGDLE--------SLPGRTVDETLEMKIMQTLGKARDSA--------GDVAEENFDEDN 780
Query: 723 SLLAMFKAGSKGNLLKLVQHSLCLGLQ----------HSLAPLSFRFPHELSCAAWNRLR 772
+ M +G++G++L L Q + C+G Q + LS P++LS A
Sbjct: 781 PAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEA----- 835
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLM 829
VENS+ +GL P E F H++ R+ D A G L RRL+
Sbjct: 836 -------------HGFVENSYTSGLTPKEFFFHAMGGRE-GLVDTAVRTSKSGYLQRRLI 881
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
+ +L T YDGTVR+ + IVQF + +GTS
Sbjct: 882 NALSELETQYDGTVRDT-SDTIVQFEFGEDGTS 913
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ +P EC +CG + C GHFG I+ ++H F I +LL C +C ++
Sbjct: 50 DPRLGVIDPGLECKTCGQRS-GGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASL 108
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 151/573 (26%), Positives = 259/573 (45%), Gaps = 75/573 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR + R V++ DP + L E+G+P +VA + + +N N ER + + G
Sbjct: 387 GKRVNFSARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPG 446
Query: 378 ELYVCRKGGL-VRIRR------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R G VR+ + +E G + R L DGDI++ NR PS+H S++A V
Sbjct: 447 ANYVTRPDGRRVRVTEKVCEELAERVEPGWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEV 506
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
V+P + +N + C P++ DFDGD ++ + Q AR E L+ + +Q+++ + G N
Sbjct: 507 VVMPYKTF-RLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGEN 565
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQ-LQMFCPHRFLSPDIFKISKDSVWSGKQLFS 549
++ QD ++ +LL D+ + Q L+ + D W+G Q+FS
Sbjct: 566 IIGAIQDHISGTYLLTNDNPRFNETQASDLLRQTRIDELPAAAGTDEDGDQYWTGHQIFS 625
Query: 550 MLLPPD--FEYTFPSKD-VYISGGKLISAE-GSSWLRDYEGNLFQYLIKRYRD-KVLDFL 604
LLP D E+T + D V I G+L+ + +Y + + K + + + F+
Sbjct: 626 ELLPDDLSLEFTGTTGDTVVIEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFI 685
Query: 605 YAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH 664
+ + G ++ + D +++ + R +DE Q + Q +++++
Sbjct: 686 NEVASLAMRSIMHFGFSIGIDDETVSTEARER---IDEAI------QSAYDRVQELIETY 736
Query: 665 MNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDN 722
N + SL G + + E + L +A A ++A + +DN
Sbjct: 737 ENGDLE--------SLPGRTVDETLEMKIMQTLGKARDSA--------GDVAEENFDEDN 780
Query: 723 SLLAMFKAGSKGNLLKLVQHSLCLGLQ----------HSLAPLSFRFPHELSCAAWNRLR 772
+ M +G++G++L L Q + C+G Q + LS P++LS A
Sbjct: 781 PAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSSEA----- 835
Query: 773 AGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLM 829
VENS+ +GL P E F H++ R+ D A G L RRL+
Sbjct: 836 -------------HGFVENSYTSGLTPKEFFFHAMGGRE-GLVDTAVRTSKSGYLQRRLI 881
Query: 830 FFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
+ +L T YDGTVR+ + IVQF + +GTS
Sbjct: 882 NALSELETQYDGTVRDT-SDTIVQFEFGEDGTS 913
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+PRLG+ +P EC +CG + C GHFG I+ ++H F I +LL C +C ++
Sbjct: 50 DPRLGVIDPGLECKTCGQRS-GGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASL 108
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 154/605 (25%), Positives = 261/605 (43%), Gaps = 93/605 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L + + + G
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ ++ + R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 478 ARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL--------QMFCPHRFLSPDIFKISKDSV 541
L++ QD LT A+LL + Q+ R P I K ++
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPV--TL 594
Query: 542 WSGKQLFSMLLPPD-------------FEYTFPSKD-------VYISGGKLISA--EGSS 579
W+GKQ+FS++L P +Y +D V I +L+S + +
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGT 654
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
+ N+F L++ + +++ D + + +LS RG ++ + D+
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQ------- 707
Query: 639 LMDEIFYGLREAQ-DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
GL +A+ + N D ++ L + K LQ Q+ ++
Sbjct: 708 -------GLLKAKYELLNAGYKKCDEYIEALNTGK-------LQ--------QQPGCTAE 745
Query: 698 ASVDAFKHVFWDIQNLAYKYGS-------KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
+++A + ++ + GS K NS L M GSKG+ + + Q C+G Q
Sbjct: 746 ETLEAL--ILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQ- 802
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
A R P + AK + V NSF +GL P E F H++ R
Sbjct: 803 --AISGSRVPDGFENRSLPHFEKHSKLPAAKGF-----VANSFYSGLTPTEFFFHTMAGR 855
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ + DLC+ YD TVR++ G+ I+QF Y +G E
Sbjct: 856 EGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGD-IIQFIYGGDGLDPAAMEG 914
Query: 869 GDQPV 873
D+P+
Sbjct: 915 KDEPL 919
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+ TR+ +N GI+A + ++ + + G +I H++++++ ++ GE
Sbjct: 1241 VKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEV 1300
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ GLA ++ S + A F AA G D++ G + + G ++
Sbjct: 1301 LGITRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355
Query: 1252 GTG 1254
GTG
Sbjct: 1356 GTG 1358
Score = 37.7 bits (86), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC 112
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 160 bits (404), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 154/605 (25%), Positives = 261/605 (43%), Gaps = 93/605 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR D R V++ DPN+++ E+ +P VA+ L E++N N L + + + G
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Query: 378 ELYVCRKGGLV--------RIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
++ ++ + R + L+ GDI+ R L DGD+VL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMAHL 477
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 478 ARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGE 536
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL--------QMFCPHRFLSPDIFKISKDSV 541
L++ QD LT A+LL + Q+ R P I K ++
Sbjct: 537 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILK--PVTL 594
Query: 542 WSGKQLFSMLLPPD-------------FEYTFPSKD-------VYISGGKLISA--EGSS 579
W+GKQ+FS++L P +Y +D V I +L+S + +
Sbjct: 595 WTGKQIFSVILRPSDDNPVRANLRTKGKQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGT 654
Query: 580 WLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
+ N+F L++ + +++ D + + +LS RG ++ + D+
Sbjct: 655 LGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQ------- 707
Query: 639 LMDEIFYGLREAQ-DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQ 697
GL +A+ + N D ++ L + K LQ Q+ ++
Sbjct: 708 -------GLLKAKYELLNAGYKKCDEYIEALNTGK-------LQ--------QQPGCTAE 745
Query: 698 ASVDAFKHVFWDIQNLAYKYGS-------KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQH 750
+++A + ++ + GS K NS L M GSKG+ + + Q C+G Q
Sbjct: 746 ETLEAL--ILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQ- 802
Query: 751 SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810
A R P + AK + V NSF +GL P E F H++ R
Sbjct: 803 --AISGSRVPDGFENRSLPHFEKHSKLPAAKGF-----VANSFYSGLTPTEFFFHTMAGR 855
Query: 811 DSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEI 868
+ G + RRL+ + DLC+ YD TVR++ G+ I+QF Y +G E
Sbjct: 856 EGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGD-IIQFIYGGDGLDPAAMEG 914
Query: 869 GDQPV 873
D+P+
Sbjct: 915 KDEPL 919
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+ TR+ +N GI+A + ++ + + G +I H++++++ ++ GE
Sbjct: 1241 VKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEV 1300
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ GLA ++ S + A F AA G D++ G + + G ++
Sbjct: 1301 LGITRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355
Query: 1252 GTG 1254
GTG
Sbjct: 1356 GTG 1358
Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTC 112
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 151/609 (24%), Positives = 255/609 (41%), Gaps = 99/609 (16%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLS-VCISFRLLEKG 377
GKR D R V++ DPN+ + E+ +P +VA+ L E++ +N +L + ++ + G
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Query: 378 ELYVCRKGGLVR--------IRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
Y+ ++ R ++ L++GD++ R L DGD+VL NR PS+H S+++
Sbjct: 430 ANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHY 489
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
K+ P + +N C+P++ DFDGD ++ ++PQ AR E L+ + L+ +SG
Sbjct: 490 AKIRPWRTF-RLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGE 548
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQ 546
+++ QD +T ++L+ + QL F P + +W+GKQ
Sbjct: 549 PIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFDIPPPAIMKPYYLWTGKQ 608
Query: 547 LFSMLLPPDF------------EYTFPSKD-------------VYISGGKLISA-EGSSW 580
+FS+L+ P+ + P K V I G +++S S
Sbjct: 609 VFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKSV 668
Query: 581 LRD-YEGNLFQYLIKRYRDKVLDFLYAAQEVLC-EWLSVRGMTVSLSDLYLASHSCSRKI 638
L D + ++F +++ Y + LC +L RG ++ ++D+ A +K
Sbjct: 669 LGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKE 728
Query: 639 LMDEIFY------------GLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLS 686
+ EI Y G E Q CN +Q +
Sbjct: 729 ELVEIAYHKCDELITLFNKGELETQPGCNEEQTL-------------------------- 762
Query: 687 YEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCL 746
E + LS+ + ++ N N+ L M GSKG+ L + Q +
Sbjct: 763 -EAKIGGLLSKVREEVGDVCINELDNW--------NAPLIMATCGSKGSTLNVSQMVAVV 813
Query: 747 GLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHS 806
G Q R P + T +K + V NSF +GL+P E H+
Sbjct: 814 GQQ---IISGNRVPDGFQDRSLPHFPKNSKTPQSKGF-----VRNSFFSGLSPPEFLFHA 865
Query: 807 VTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
++ R+ G ++RRLM + DL YD TVR + N IVQF+Y +G
Sbjct: 866 ISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTS-ANGIVQFTYGGDGLDPL 924
Query: 865 TGEIGDQPV 873
E QPV
Sbjct: 925 EMEGNAQPV 933
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+P++G+ + + EC++C + +C GHFG +K + H + ++L IC C I
Sbjct: 55 DPKMGVSSSSLECATCHG-NLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAI 113
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 119/318 (37%), Gaps = 42/318 (13%)
Query: 937 EYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHS 996
E A VK +E +LSD+ +Y + VR ++ L+
Sbjct: 1151 ERAARVVKGRVEKTLLSDVAFYVQDVYKDN----------LSFIQVRIDLGTIDKLQLEL 1200
Query: 997 IIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDL 1056
I+ + A ++LKI D+ I KD +IN+ E A ++ E + D+
Sbjct: 1201 TIEDIAVAITRA-SKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSEN---DV 1256
Query: 1057 ETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITS 1116
+ L VVKG +I + I +D G+ L V G +
Sbjct: 1257 FYRMQQLRRALPDVVVKGLPDISRAVINIRDD-----------GKRELLVEGYGLRDVMC 1305
Query: 1117 LWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPE 1176
D + +R+ +++ GI+A + + +S+ G ++ P
Sbjct: 1306 ------------TDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPR 1353
Query: 1177 HLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNL 1236
H+ ++ + ++ GE +G+ GL+ R S A F AA D +
Sbjct: 1354 HIQLLGDVMTYKGEVLGITRFGLSKMR-----DSVLQLASFEKTTDHLFDAAFYMKKDAV 1408
Query: 1237 QGSVDALGWGKVPSVGTG 1254
+G + + G+ S+GTG
Sbjct: 1409 EGVSECIILGQTMSIGTG 1426
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 167/649 (25%), Positives = 265/649 (40%), Gaps = 103/649 (15%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI--------- 369
GKR D R V++ DPN+++ E+ +P VA+ L E++N N + +
Sbjct: 358 GKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Query: 370 -SFRLLEKGELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIAL 428
+F ++ K G R + L+ GDI+ R L DGDIVL NR PS+H S++A
Sbjct: 418 ANFIQQRHTQMKRFLKYG-NREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMAH 476
Query: 429 TVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSG 488
+V P N C+P++ DFDGD ++ ++PQ A+ E L+ L+ ++G
Sbjct: 477 IARVKP-HRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 489 RNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL--------QMFCPHRFLSPDIFKISKDS 540
L++ QD LT A+LL + Q+ R P I K +
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPAILK--PVT 593
Query: 541 VWSGKQLFSMLLPPD-------------FEYTFPSKD-------VYISGGKLISA--EGS 578
+W+GKQ+FS +L P +Y +D V I +L+S +
Sbjct: 594 LWTGKQVFSSILKPSDDCPVKANLRTKGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKG 653
Query: 579 SWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDL---------- 627
+ + N+F L++ + + + D + + +LS RG ++ + D+
Sbjct: 654 TLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAK 713
Query: 628 YLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSY 687
Y H+ +K DE EA +T QQ E+ +L + LS
Sbjct: 714 YELLHAGYKKC--DEYI----EALNTGKLQQ---------QPGCTAEETLEALILKELSV 758
Query: 688 EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLG 747
+ + + +D K NS L M GSKG+ + + Q C+G
Sbjct: 759 IRDHAGSACLRELD------------------KSNSPLIMALCGSKGSFINISQMIACVG 800
Query: 748 LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSV 807
Q A R P + AK + V NSF +GL P E F H++
Sbjct: 801 QQ---AISGSRVPDGFENRSLPHFEKHSKLPAAKGF-----VANSFYSGLTPTEFFFHTM 852
Query: 808 TSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPT 865
R+ G + RRL+ + DLC+ YD TVR++ G+ I+QF Y +G
Sbjct: 853 AGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGD-IIQFIYGGDGLDPAA 911
Query: 866 GEIGDQPVGSLSACAISEAAYSALDQPI----SLLETSPLLNLKNVLEC 910
E D+P+ A Y +P L+ TS + KN C
Sbjct: 912 MEGKDEPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSESIMKKNEFLC 960
Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+ T++ +N GI+A + ++ + + G +I H++++++ ++ GE
Sbjct: 1241 VKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEV 1300
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G+ GLA ++ S + A F AA G D++ G + + G ++
Sbjct: 1301 LGITRFGLAKMKE-----SVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355
Query: 1252 GTG 1254
GTG
Sbjct: 1356 GTG 1358
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
V + R+G C +CG K+ C GH+G+I H + + +L IC C
Sbjct: 55 VLDHRMGTSEKDRPCETCG-KNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTC 112
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 157 bits (396), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 154/575 (26%), Positives = 255/575 (44%), Gaps = 60/575 (10%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG- 377
GKR D R V++ DPN+ + E+ +P VA L +R+ N E + RL+ G
Sbjct: 361 GKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMR-----RLVRNGP 415
Query: 378 -------ELYVCRKGGLVRIR------RIDA-LELGDIIYRPLTDGDIVLINRPPSIHPH 423
+Y+ ++G ++ R+ A L +GDI+ R + +GD+VL NR PS+H
Sbjct: 416 HVHPGATTVYLAQEGSKKSLKNERDRHRLAARLAVGDIVERHVMNGDLVLFNRQPSLHRV 475
Query: 424 SLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLI 483
S++A +VLP + N CC+P++ DFDGD ++ + Q AR E +L++ + +I
Sbjct: 476 SMMAHRARVLPFRTF-RFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQLMSTARNII 534
Query: 484 NQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ-----LQMFCPHRFLSPDIFKISK 538
+ ++G +++ QD L AA+L+ V + Q L R P I K +
Sbjct: 535 SAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPVTQFRLPIPAILKPVE 594
Query: 539 DSVWSGKQLFSMLLPPDFE------YTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYL 592
+W+GKQLF +++ P E + P+K Y GK AE Y L
Sbjct: 595 --LWTGKQLFELIVRPSPEVDVLLSFEAPTK-FYTRKGKHDCAE-----EGYVAFLDSCF 646
Query: 593 IKRYRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD 652
I DK L A + ++ G + + + SR + GL +
Sbjct: 647 ISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFSLGLGDVAP 706
Query: 653 T--CNFQQLMVDSHMNFLMSA--KDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFW 708
T N Q+ V + + K +++ R + L+ ++ A L+ V
Sbjct: 707 TPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNT----ELSKVRD 762
Query: 709 DIQNLAYKYGS-KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+ A + S +N+ L M ++GSKG+ L + Q C+G Q + S
Sbjct: 763 ECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPH 822
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLT 825
++R + A+ + V NSF +GL+P E F H++ R+ G +
Sbjct: 823 FHRF---EEAPAARGF-----VANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIY 874
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
RRLM M +L YDGTVRN G+ ++Q + +G
Sbjct: 875 RRLMKAMENLSVRYDGTVRNTKGD-VIQLRFGEDG 908
Score = 41.6 bits (96), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVME----IGAVSE--VTNPRLGLPNP 54
+ +F E P I + + G+ + + +LSV+ +G V E V + RLG+ +
Sbjct: 12 LPQQFVEPLPHAPVEI-SALHYGLLSRNDVHRLSVLPCRRVVGDVKEYGVNDARLGVCDR 70
Query: 55 TNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+ C +CG + C GH G I + H F + + ++ +IC +C +
Sbjct: 71 LSICETCGLNSIE-CVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHV 120
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 154/599 (25%), Positives = 265/599 (44%), Gaps = 90/599 (15%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ ++GKR D R V+T DPNI L+E+G+P ++A+ E++ S+N +RL +
Sbjct: 307 IRGNLMGKRVDFSARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAG 366
Query: 373 LLEK-GELYVCRKGGL---VRIRRIDA-LELGDIIYRPLTDGDIVLINRPPSIHPHSLIA 427
E G YV R G + R D LE G ++ R + GD+VL NR PS+H S++A
Sbjct: 367 PNEHPGANYVLRSDGQKIDLNFNRSDIRLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMA 426
Query: 428 LTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQS 487
+V+ + +N SP++ DFDGD ++ ++PQ+ ++ EL EL + +Q+I+ QS
Sbjct: 427 HYARVMG-NKTFRLNLSVTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSRQIISPQS 485
Query: 488 GRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQM-----FCP-----------HRFLSP 531
+ ++ + QD+LT L L+ ++ L FC +
Sbjct: 486 NKPVMGIVQDTLTGLRLFTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQTGLRKGKDY 545
Query: 532 DIFKISKD-------SVWSGKQLFSMLLPPDFEYTFPS------------------KDVY 566
DI KI + +W+GKQ+ S +L P+ Y S +D Y
Sbjct: 546 DIMKILRKPAIAKPMRLWTGKQVLSFVL-PNLNYIGLSSEHDDDDKENIGDTRVIIQDGY 604
Query: 567 ISGGKL-ISAEGSSWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLS-VRGMTVS 623
I G + A G++ +G L + + K F Q ++ +++ + ++
Sbjct: 605 IHSGVIDKKAAGAT-----QGGLVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMG 659
Query: 624 LSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGE 683
+ D + K++ I R+A++ + L+ ++ N L S +
Sbjct: 660 IGDTIADPKTV--KVVESAI----RKAKEEVS--ALIENARQNRLERLPGMTMKESFE-S 710
Query: 684 HLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHS 743
HL+ R+ +S S A + S++N++ M AGSKG+ + + Q +
Sbjct: 711 HLNLVLNRARDVSGTS--------------AQRSLSENNNMKTMVLAGSKGSFINISQVT 756
Query: 744 LCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECF 803
C+G Q+ R P S D T ++ + VENS+LTGL+P E F
Sbjct: 757 ACVGQQNVEGK---RIPFGFSHRTLPHFVKDDYTGKSRGF-----VENSYLTGLDPEEFF 808
Query: 804 IHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
H++ R+ G + RRL+ + D D +VR+ G + Q Y +G
Sbjct: 809 FHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNG-LVYQIKYGEDG 866
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 35 VMEIGA--VSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIA 92
VME G + + R+G + C SCG D +C GHFG I+ + H ++S I
Sbjct: 36 VMEGGVPKTGGLIDLRMGTTDRMYLCQSCGG-DNFSCPGHFGHIELTKPMFHVGYISKIK 94
Query: 93 KLLNSICPKCKTIRKERQ 110
K+L +C C I+ R+
Sbjct: 95 KVLECVCFYCSKIKIPRK 112
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 151/584 (25%), Positives = 261/584 (44%), Gaps = 75/584 (12%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI-SFRLLEKG 377
GKR + R V++ DPNI + E+G+P +A + + + WN +R+ I + + G
Sbjct: 311 GKRVNFSARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPG 370
Query: 378 ELYVCRKGGL-VRIRR------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTV 430
YV R G +RI ++ L+ G I+ R L DGDIVL NR PS+H S++A V
Sbjct: 371 ANYVIRPDGRKIRIYNETKEVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHQV 430
Query: 431 KVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRN 490
+VLP + +N C P++ DFDGD ++ ++ Q +R E L+ + + +++ + G
Sbjct: 431 RVLPYKT-FRLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKTLMRVQEHILSPRFGGP 489
Query: 491 LLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSM 550
++ D ++ A+LL S + S ++ Q+ PD S+ W+GK++FSM
Sbjct: 490 IIGGIHDHISGAYLLTRKSAVFSEEKV--FQILKKAGLPLPD----SRGRDWTGKEIFSM 543
Query: 551 LLPPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWLRDYEGNLFQYL 592
+LP D + ++ D Y I G+LIS + G + ++
Sbjct: 544 VLPDDLNMVYRAEVCRKCEECLEMECENDAYVVIENGQLISGVIDEKAYGAFAGKILDHI 603
Query: 593 IKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQ 651
+K Y D +FL +A ++ + G T S +D + + R I LR A+
Sbjct: 604 VKEYGTDAAREFLDSATKLAIAGIMHAGFTTSTNDEEIPEEARER------IEAHLRNAE 657
Query: 652 DTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWD 709
+ ++ L+ A ++ L G L + E + L +A + +
Sbjct: 658 -----------ARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEARDKSGE----- 701
Query: 710 IQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAW 768
+A Y D N + M G++G++L L Q + C+G Q R + +
Sbjct: 702 ---IAESYFDMDENHAVIMALTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHF 758
Query: 769 NRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLT 825
+ G AKS V +S+ GL+P+E F H++ R+ D A G +
Sbjct: 759 KKGELG-----AKS---RGFVHSSYKEGLDPIEFFFHAMGGRE-GLVDTAIRTAQSGYMQ 809
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
RRL+ ++DL +G V + G I+Q + +G + G
Sbjct: 810 RRLVNALQDLTVDENGRVVDNRG-VIIQNRFGEDGVDPAKSDYG 852
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 24 ISTDTEKEKLSVMEIGAVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTIL 83
++ DT E +E G + +PRLG+ +P+ C +CGAK + C GHFG I ++
Sbjct: 30 VTPDTYDEDGYPIENG----LMDPRLGVIDPSLRCRTCGAKGGE-CPGHFGSINLARPVI 84
Query: 84 HPYFLSDIAKLLNSICPKCKTI 105
H F I K+L S C KC +
Sbjct: 85 HVGFADTIHKILRSTCRKCGRV 106
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 151/592 (25%), Positives = 260/592 (43%), Gaps = 103/592 (17%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKG- 377
GKR + R V++ DP + + E+GIP +A+ L + E++ +N ER+ +L+E G
Sbjct: 318 GKRVNFSARTVISPDPRLSINEVGIPELIAKELTVPEKVTPYNIERIR-----KLIENGS 372
Query: 378 --------------------ELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRP 417
E Y + + ++ + G ++ R L DGD+VL NR
Sbjct: 373 DKHPGVNYVIKKVKTKDGKEEEYKIKITDTNKKMWVENIVDGMVVERHLGDGDVVLYNRQ 432
Query: 418 PSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVA 477
PS+H S++A VKVLP + N C P++ DFDGD ++ ++PQ+ AR E L+
Sbjct: 433 PSLHRMSIMAHKVKVLPYRTFRH-NLCVCPPYNADFDGDEMNVHVPQSEEARAEAETLML 491
Query: 478 LDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLS----PDI 533
++K +I+ + G ++ D ++ A++L + ++ + L + F S PD
Sbjct: 492 VEKHIISPRYGGPIIGAIHDFVSGAYVLTSSNF----IKDEALTLLKSSGFGSELGEPD- 546
Query: 534 FKISKDSVWSGKQLFSMLLPPDFEYTFPSKD-----------------VYISGGKLISAE 576
F + +SGK LFS LP + +K V I G+L+
Sbjct: 547 FVENGIEYYSGKSLFSKTLPKGLNLQYKAKVCKKCVQCKREECENDAFVIIRNGRLVQGV 606
Query: 577 -GSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSC 634
+ G + ++K + + FL +A ++ + + +RG T + D + S +
Sbjct: 607 IDKNGFGAETGVVLNTIVKDFGSEDARTFLDSATKMSVKSMMLRGFTTGIDDEDIPSEA- 665
Query: 635 SRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694
++E QD + +S + ++ + + L G + E+ R A
Sbjct: 666 ------------IQEIQDLLD----KAESDVQEIVERYEGGTLDPLPGRGI--EESREAY 707
Query: 695 LSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP 754
+ Q A D +A KY SK+N M + G++G+LL + + +G Q
Sbjct: 708 IMQILGKARD----DTGKVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQSVRGG 763
Query: 755 LSFR------FPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVT 808
FR PH G+ + AKS+ V + + GL P E F H++
Sbjct: 764 RVFRGYRGRTLPH-----------FGEGSLDAKSH---GFVRSCYKKGLAPTEYFFHAMG 809
Query: 809 SRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYN 857
R+ D A G + RRL+ ++D+ YDGTVR++ G IVQF+Y
Sbjct: 810 GRE-GLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRG-IIVQFNYG 859
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 46 NPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+ RLG+ +P C SC + C GHFG I+ +++H F DI KLL ++CP C +
Sbjct: 50 DTRLGVIDPGLVCKSCSGR-VGTCPGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKV 108
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 211/907 (23%), Positives = 367/907 (40%), Gaps = 191/907 (21%)
Query: 49 LGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR-- 106
+G+ P C++CG K C GHFG I+ ++H F+ +I L++ C C I+
Sbjct: 51 MGVIEPGLRCATCGGK-VDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCRSCGRIKLT 109
Query: 107 --------KERQK---GAGSSR------------KEQPRVCKYCVRNPAQWYPRMRFKLS 143
E QK G Q VC +C AQ + K +
Sbjct: 110 DDEIRTYLPEIQKMDFETGDPEDIEILTKKYVDLASQRMVCPHC---GAQQSKIILDKPT 166
Query: 144 SKDLSGKTAIIV--EIDEKLSKKNKKLPDD---YWGFIPFDAQQEENSVKPNRKVLSCKQ 198
+ G I EI E+L +++PDD ++GF P + +P VL+
Sbjct: 167 TFREEGTNVKITPKEIRERL----ERIPDDDLIFFGFNP-------KTARPEWMVLTVLP 215
Query: 199 VSYLLKDVDPSIR-EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKL--------- 248
V + +V PSI E S+D K + + R+ E S + +
Sbjct: 216 VPPI--NVRPSITLETGERSEDDLTHKLVDIIRISQRLRESRDNGSPQLIIEDLWDLLQF 273
Query: 249 ----FFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDSAEVRQKKNIDI 304
+FDN T + GR L LVQ R E R + N+
Sbjct: 274 HVTTYFDNQTPGIPPARHRSGR--ALKTLVQ--------------RLKGKEGRFRSNLS- 316
Query: 305 SNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWER 364
GKR R V++ +P + + E+G+P + A L + +N +N +
Sbjct: 317 --------------GKRVSFSSRTVISPEPYLSVNEVGVPERAARELTVPVIVNQFNIDE 362
Query: 365 LSVCI--------SFRLLEKGELYVCRKGGLVRIRRI-----------DALELGDIIYRP 405
+ I F G YV R G RRI D +++G + R
Sbjct: 363 MRELIKRGRNPRDQFGRYVTGVNYVIRPDG----RRIKITDQNAAENADRIDIGWTVERQ 418
Query: 406 LTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQA 465
L +GDIVL NR PS+H S++ TV++LP N C+P++ DFDGD ++ ++ Q
Sbjct: 419 LMEGDIVLFNRQPSLHRMSMMGHTVRILP-GQTFRFNLAVCTPYNADFDGDEMNLHVIQK 477
Query: 466 IGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP 525
AR E ++ + +Q+++ + G ++ D +TA LL ++ +H +M +
Sbjct: 478 EEARAEARIIMKVQEQIMSPRFGGPIIGGIHDHVTALFLLTHNNPRYTHEEMVHIMA--- 534
Query: 526 HRFLSPDIFKISK----DSVWSGKQLFSMLLPPDFEYTFPSK----------------DV 565
+L PD+ ++ + + G+ +FS +LP F SK D
Sbjct: 535 --YLEPDLLPEARIENGEKYYYGRDIFSTILPKGLNVRFRSKLCSGSSERCEFEDDPSDT 592
Query: 566 YIS--GGKLISAE-GSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMT 621
Y+ GK+I + + + G + + +++ + F+ + +++ RG +
Sbjct: 593 YVEIVDGKMIHGTIDEAAVSPFSGAIIDKIFRKFGSQEAARFIDRMTRLAVGFITYRGFS 652
Query: 622 VSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQ 681
+SD + + +R ++E+ + +A+D N +L+ L A +L+
Sbjct: 653 TGISDYDIPESAVAR---IEEL---VAQAEDRIN--KLIETFRRGELQPAPGRSVEDTLE 704
Query: 682 GEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKY-GSKDNSLLAMFKAGSKGNLLKLV 740
E LS+A V V + +A Y G K S++ M ++G++ +L +
Sbjct: 705 ME----------ILSEAGV-----VRDESGKIASSYLGLKVPSVI-MARSGARATMLNIS 748
Query: 741 QHSLCLGLQHSLAPLSFRFPHELSCAAWNR----LRAGDNTECAKSYIPSAVVENSFLTG 796
+ + +G Q L+ +NR + GD A+ + V +S++TG
Sbjct: 749 EVAGIVGQQSVRG-------GRLNRGYYNRTLPHFKRGDIGADARGF-----VRSSYMTG 796
Query: 797 LNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQ 853
L+P E F HS+ R+ D A G + RRL+ DL V++ G+ ++Q
Sbjct: 797 LSPTEYFFHSIGGRE-GLVDTAVRTSRSGYMQRRLINAFEDLKVDDSREVKDTVGS-LIQ 854
Query: 854 FSYNIEG 860
Y +G
Sbjct: 855 IRYGEDG 861
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium falciparum
PE=3 SV=1
Length = 2339
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 129/504 (25%), Positives = 209/504 (41%), Gaps = 83/504 (16%)
Query: 393 IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGD 452
I L +GD++ R + DGDIVL NR PS+H S++ K++ + N CSP++ D
Sbjct: 553 IQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTF-RFNECVCSPYNAD 611
Query: 453 FDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLL 512
FDGD ++ +PQ AR E L+ + LI ++G +++L QD L+A++++ L
Sbjct: 612 FDGDEMNLDVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFL 671
Query: 513 ---------SHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPD-------- 555
S+ L + P P I K +W+GKQL S+L+ P+
Sbjct: 672 DRDTFCLLCSYFSDASLYIELP----IPAILK--PKELWTGKQLISVLIKPNKKENTIIN 725
Query: 556 ---FEYTFPSK----------DVYISGGK---LISAEGSSWLRDYEGNLFQYLIKRYRDK 599
E + +K D Y+ K + + G L + LF YLI
Sbjct: 726 FEIQEREYSNKFGDLKHLCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIHHNSSH 785
Query: 600 V-LDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQ 658
+ L + ++ + S +GMT+ + D+ + Q
Sbjct: 786 IALKIMNRLSKLTSRYFSNKGMTIGIDDVRPS---------------------------Q 818
Query: 659 LMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYK-- 716
+ + + L+ + + + + Q L + K + D++N A K
Sbjct: 819 TLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTC 878
Query: 717 --YGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAG 774
Y N L MF +G+KG L+ + Q C+G Q+ + NR
Sbjct: 879 NQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAG-------QRIQNGFINRTLPH 931
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFM 832
+ C S V+NSF TGL+P E F H+++ R+ G + RRLM +
Sbjct: 932 FHFHCKDSE-SRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKAL 990
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSY 856
DL YD +VR+ QIVQF Y
Sbjct: 991 EDLSIHYDYSVRSC-DKQIVQFIY 1013
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI 369
GKR D R V++ DPNI + E+ IP +A RL E +N +N ++L + I
Sbjct: 356 GKRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLI 406
Score = 39.3 bits (90), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
V + +LG + C +C K C GHFG+I+ + + H + I +L IC C
Sbjct: 74 VLDLKLGAHKSNSVCETCNKK-LINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCS 132
Query: 104 TIRKERQK 111
++ ++K
Sbjct: 133 SLLLSKEK 140
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 1150 GIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVS 1209
GI+A + ++ + +I H++++A+ ++ TG+ +G+N G+ R+
Sbjct: 2209 GIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQ----- 2263
Query: 1210 SPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIY 1261
S + A F ++ VD + +++ GK +GTG F ++Y
Sbjct: 2264 STLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGA-FQLLY 2314
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 156/317 (49%), Gaps = 29/317 (9%)
Query: 256 HLKKMVDYRGRDIELSHLVQDCLKISKLHLDKSSRKDS-----AEVRQKKNID-----IS 305
LK+ D RG SH++QD + + H+ D A R KK I +
Sbjct: 308 QLKRQTD-RGAK---SHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSKKPIKAIRTRLK 363
Query: 306 NSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL 365
G ++ ++GKR D R V+TGDPN+ + IG+P VA L E + N++ L
Sbjct: 364 GKEG--RLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYDNL 421
Query: 366 SVCISFRLLE-KGELYVCRKGG----LVRIRRIDA--LELGDIIYRPLTDGDIVLINRPP 418
+ E G Y+ R G L +RR LE G + R +TD D +L NR P
Sbjct: 422 KKLVERGPYEWPGAKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTDEDYILFNRQP 481
Query: 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVAL 478
S+H S++ K+LP S+ +N SP++ DFDGD ++ ++ Q+ R E+ L+ +
Sbjct: 482 SLHKMSIMGHKAKILPYSTF-RLNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKHLMIV 540
Query: 479 DKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFK 535
+Q+++ Q + ++ + QDSL A L+ ++ L ++ P H +P I K
Sbjct: 541 QRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEEVMSLLIWIPYWNHVIPTPAIIK 600
Query: 536 ISKDSVWSGKQLFSMLL 552
++W+GKQ+FSMLL
Sbjct: 601 --PRALWTGKQIFSMLL 615
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 120/270 (44%), Gaps = 40/270 (14%)
Query: 598 DKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657
DK DFL A Q+V WL G TVS SD+ I +++ +RE D
Sbjct: 800 DKTKDFLSALQKVTNNWLEYVGFTVSCSDI----------IASNKVLGKVREILDKS--- 846
Query: 658 QLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFWDIQNLAY 715
S ++ L+ G+ L S+E + + L+ A A K +A
Sbjct: 847 ----KSEVSKLVEKAQKGELECQPGKSLYESFETRVNNELNCAREMAGK--------VAS 894
Query: 716 KYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAP-LSFRFPHELSCAAWNRLRAG 774
+ + N++ +M +GSKG+++ + Q C+G Q+ + F F H S + + G
Sbjct: 895 ESLDERNNIFSMVASGSKGSIINISQIISCVGQQNVEGKRIPFGFNHR-SLPHFIKFDYG 953
Query: 775 DNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFM 832
+ V NS+L+GL P E F H++ R+ G + RRL+ M
Sbjct: 954 PESR--------GFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAM 1005
Query: 833 RDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
D+ YD TVRN+YG+ I+QF Y +G +
Sbjct: 1006 EDVMVQYDRTVRNSYGD-IIQFLYGEDGMA 1034
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
+D+ ++ ++I GI+A + L L + IS + HL I+ + ++ G
Sbjct: 1932 VDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQKGYL 1991
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+ + G+ K P ++ F ++AA VDNL+G + + G++ +
Sbjct: 1992 MSITRHGINRVDK-----GPLIKCSFEETVEILLEAAAFAQVDNLRGITENIMLGQLCKI 2046
Query: 1252 GTGGHFDII 1260
GTG FDII
Sbjct: 2047 GTGS-FDII 2054
>sp|Q6GZW7|RPB1_FRG3G Putative DNA-directed RNA polymerase 008R OS=Frog virus 3 (isolate
Goorha) GN=FV3-008R PE=3 SV=1
Length = 1293
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 149/635 (23%), Positives = 248/635 (39%), Gaps = 122/635 (19%)
Query: 285 LDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIP 344
+ ++RK A ++++ I GL ++ ++GKR + R VV D +++ E+G+P
Sbjct: 267 MHATNRKPMAGIKER----IGKKGGL--LRQNIMGKRRNQTGRSVVGPDGTLEVDEVGVP 320
Query: 345 CQVAERLQISERLNSWNWERLSVCI-------------------SFRLLEKGELYVCRKG 385
+A+ L + + +N L + +R +
Sbjct: 321 EAIADNLTVPVMVTPFNVSSLEAMMRDGRVSSVEMRDGTVHRPSEWRPSHGDHMETADGS 380
Query: 386 GLVRIRR-----------IDALELGDIIYRP-----------------LTDGDIVLINRP 417
L R+ R + + + G+ + RP L DGD V +NR
Sbjct: 381 PLGRVTRPSYDARDPSVVLRSWKTGETVTRPPPFSWPKLEPGMTVTRCLVDGDPVALNRQ 440
Query: 418 PSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVA 477
P++H +S++ + VK LP + +N S F+ DFDGD + Y+PQ AR E T L+
Sbjct: 441 PTLHRNSMLGMRVKRLP-GKTIRLNLSVTSGFNMDFDGDEGNLYLPQGPQARSE-TMLLM 498
Query: 478 LDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKIS 537
K +I G + A L++D VL HL ++ CP L+ + ++
Sbjct: 499 NPKSVIMSARGPH----------AEVSLVQDGVLGCHLMSLNSEIPCPPEELATCLMEVH 548
Query: 538 KDSVWSGKQLFSMLLPPD-FEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRY 596
W + + P D PS GG G + G+L + +K+
Sbjct: 549 GCEGWDVRDVEKGATPRDLLSSVLPSTLTVDCGGGCRIESG----KIVSGHLTKSAVKKI 604
Query: 597 ---------RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGL 647
D + Q + WLS R +V SD + +++ D + +
Sbjct: 605 VRAVCLENGGDAAGKLVDKLQFLTNAWLSHRPFSVGYSDCLTERPEETVRMVADAVCSKI 664
Query: 648 REAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVF 707
EA+ A D E S+ L + R A++ A++
Sbjct: 665 LEAE-------------------AADDEDGVSVA---LCGARDRGQAVTCAAL------- 695
Query: 708 WDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+ DN + M +A SKG++ L Q + LG Q+ + +
Sbjct: 696 -----------TPDNRMAVMSRAQSKGDMFNLTQIAGLLGQQYVGGSRPGKEIDGGRRSL 744
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDS--SFSDNADLPGTLT 825
+ R D + Y V +SFL GLNP E F H+ + R+ S S + G
Sbjct: 745 PHYPRVWDLEQTTLKYESRGFVRSSFLKGLNPREVFFHAKSGREGMISTSQMTGVTGYAE 804
Query: 826 RRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
R+++ DL +AYDGTVR+A GN +VQF Y G
Sbjct: 805 RKMVKLNEDLVSAYDGTVRDAMGN-VVQFVYGGHG 838
>sp|O55766|RPB1_IIV6 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-176R PE=3
SV=1
Length = 1026
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 132/521 (25%), Positives = 229/521 (43%), Gaps = 92/521 (17%)
Query: 391 RRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFH 450
++ LE G I++R L +GDI+++NR P++H S++AL VK++ + + N C P++
Sbjct: 528 KKFIKLEEGWIVHRYLQNGDILVLNRQPTLHKASMMALRVKIMDVKTF-KFNLACTKPYN 586
Query: 451 GDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDS- 509
DFDGD ++ + PQ+ ++ EL L + +++ QSG+ L++ QDSLT A+L+ +++
Sbjct: 587 ADFDGDEMNAHAPQSEESKAELFTLSTPKQCIMSCQSGKPNLTIVQDSLTGAYLMSKENN 646
Query: 510 ------------VLLSHLQMQQLQMFCPHRFL--SPDIFKISKD-----SVWSGKQLFSM 550
+L+ Q + FL D+ K +V +GK L S+
Sbjct: 647 NDATLTNGEFNDILMVLTQNDEYNGDVVDYFLKRKEDVSNTLKKLGFSGTVLNGKGLLSL 706
Query: 551 LLPPDFEYTFPSKDVYISGGKLISA-EGSSWLRDYEGNLFQYLIKRYR-DKVLDFLYAAQ 608
L P D +D+ I+ G + +L E +L + L K Y + FL Q
Sbjct: 707 LFPNDL--YINEEDLKINRGVIYDGCLTKKYLSSTESSLIKILYKEYGVETCATFLNNIQ 764
Query: 609 EVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFL 668
+ WL + ++ D +K ++ + L E+ +++ + + F+
Sbjct: 765 FLTNRWLMISSFSIHAGD------CIKQKEVLGTVEQCLMES------EKIKMTTQNPFI 812
Query: 669 MSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMF 728
K ++ LS K +++ DA K D NL + N+ L
Sbjct: 813 REQKIMQT--------LSNAKDVGMKIAK---DALKR---DNVNLHAQ-----NNFLTTV 853
Query: 729 KAGSKGNLLKLVQHSLCLGLQ----HSLAPL----SFRFPHELSCAAWNRLRAGDNT--- 777
++GSKG+ L + Q + LG Q + PL PH + L+ +N
Sbjct: 854 ESGSKGDHLNIAQITSLLGQQITEGQRVKPLLSNGKRTLPHYI-------LKEENNDTEH 906
Query: 778 --ECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR----DSSFSDNADLPGTLTRRLMFF 831
+ + Y + +SF GLNP E F H + R D++ S G + RR +
Sbjct: 907 FHDLLEEYESQGFISSSFAQGLNPKEFFFHCMAGRQGVCDTAMS--TATSGYIMRRNVKL 964
Query: 832 MRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
D+ AYDGTV++ G + Q +Y GE+G P
Sbjct: 965 TEDIKVAYDGTVQDTRGRRF-QMAY---------GELGYDP 995
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 42/243 (17%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGA--------VSEVTNPRLGLPNPTNECSSCGAKDRKA 68
+ IS G+ + + ++S E+ + V +P+ G P + C +C ++
Sbjct: 14 IESISFGMMSSEDIRQMSSFEVKTAKISSTNLLETVHDPKSG-PIGSAPCETC-HQNEWD 71
Query: 69 CEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC------------KTIRKERQKGAGSS 116
C GHFG I+ I+HP F++ + +L C KC I K ++ ++
Sbjct: 72 CPGHFGHIELNVPIIHPLFINHVVNILKIFCWKCNEFLLTKDHLELNNILKLEKEKKFNA 131
Query: 117 RKEQPRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFI 176
E+ + C CV PR +KL D++ KT I S Y G
Sbjct: 132 VLEKIKKCDRCVHCTT---PRADYKLVLNDITYKT-----IYRTFS---------YQGGA 174
Query: 177 PFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAPF-LKCFPVTPNNHRV 235
A+ ++ + +R+++S + V + ++ E +S F L+ FPV P+ R
Sbjct: 175 VKTARDKK--LNESREIVSAEMVKKIFDNIKLEYVEMLGISHPKDFCLEVFPVIPSCCRP 232
Query: 236 TEV 238
EV
Sbjct: 233 HEV 235
>sp|Q196X0|RPB1_IIV3 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-090L PE=3
SV=1
Length = 1377
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 155/647 (23%), Positives = 259/647 (40%), Gaps = 167/647 (25%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSV----- 367
I+ +LGKR D R VV DP ++L E+ +P ++AE L I + +N + L+
Sbjct: 303 IRHNLLGKRCDQSGRTVVGPDPTLRLNELCVPKEMAEILTIPVHVTPFNRDALTQLVNSN 362
Query: 368 -------------------CISFR------------------------LLEKGELYVCRK 384
I++R +L+ G+ +
Sbjct: 363 KANFLIKAANPKRSINLKNVINYRGTLLYFGDIIERDGTRITITDTKFVLQPGDTIIRNG 422
Query: 385 GGLVRIRRID----ALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVT 440
L IR + LE+GD+I R L DGD VL+NR P++H S++A V + P+ + +
Sbjct: 423 KALKEIRYPERKQIELEVGDVIKRQLMDGDYVLLNRQPTLHKASMMAFKVVIKPVKT-LK 481
Query: 441 INPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLT 500
IN PF+ DFDGD ++ ++PQ+ A EL EL K +++ Q+G+ +++ QDSL
Sbjct: 482 INLAITKPFNCDFDGDEMNIHVPQSYEAIAELKELSCASKCIMSVQNGKPNVAIVQDSLI 541
Query: 501 AAHLLMEDSVLLSHLQ--------------------MQQLQMFCPHRF------------ 528
L D L+ M Q+ +F
Sbjct: 542 GLWFLSRDQWFCQTLKRSQFFNLLLTIDKAQNFLTRMDQICHVLKSKFPSKGNWEGSGLD 601
Query: 529 ----LSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWL--- 581
+SP + ++ V++G+ L S L P DF+Y GG +S E +L
Sbjct: 602 GDGRVSPKVGRM----VFNGRGLLSFLFPYDFDY---------CGGDGLSIESGVFLEGT 648
Query: 582 --RDYEGNLFQYLIKRYRDKVL-DFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKI 638
++ L +Y+ K Y + V+ DF+ Q + +L RG T++ SD L + S + +I
Sbjct: 649 LEKNVVNTLIKYIYKDYGETVVADFVDNIQFLTNHYLVDRGFTINASDC-LKNESIAPEI 707
Query: 639 LMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSEST--RSLQGEHLSYEKQRSAALS 696
+ L A S++T R + E++ A L+
Sbjct: 708 VS---------------------------LTRATFSKATTVRDVTINPFIQEQKTLAILN 740
Query: 697 QASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLS 756
+ K L+ + S DN+ ++GSKG++ + Q + LG Q
Sbjct: 741 SCTDQCMK--------LSKECLSSDNNFCVTTESGSKGSIFNICQITSLLGQQTIDGK-- 790
Query: 757 FRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD 816
+ L DN + +I NSF+ GL+P E F+H + D
Sbjct: 791 ---------RVYGLLHPQDNEFQDRGFIA-----NSFVEGLSPRE-FLHHAMAGRKGVID 835
Query: 817 NA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEG 860
A + G R+ + D+ D TVR+ G ++ Q+ + G
Sbjct: 836 TALLTSVSGYGQRQGVKLNEDIKIYPDYTVRDVNG-RLYQYIFGEAG 881
Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
+D ID + +NI GI+A +F + L I G + H+ + A+ L+ T
Sbjct: 1209 LDDIDVEHTTTNNIWDIYHTLGIEAAREFRIKELVEII---GTGVDLSHIKLRADRLTFT 1265
Query: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
G +L R PF + F +F K A+ VD+L G ++ GK
Sbjct: 1266 GTI-------QSLTRYTMRGEKPFSKVGFEEIMENFYKTARDAEVDDLTGVSASIMCGKR 1318
Query: 1249 PSVGTGGHFDI 1259
VGT FDI
Sbjct: 1319 AKVGT-SMFDI 1328
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAV------SEVTNPRLGLPNPTNECSSCGAKDRKACE 70
+ IS G+ + E K+S ++ +V + + +G C +C +D C
Sbjct: 10 IAKISFGVLSPEEILKMSCCKVTSVKVSDKGENIYSKFMGTIENGENCKTCD-RDVWECP 68
Query: 71 GHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
GHFG +++P F++D +L IC C
Sbjct: 69 GHFGHFHLEVPVVNPIFINDACNILRCICFNC 100
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 195/838 (23%), Positives = 345/838 (41%), Gaps = 137/838 (16%)
Query: 130 NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNK--KLPDDY-----------WGFI 176
N + PR+R + D S I+ + +K + KN KLP ++ W F
Sbjct: 229 NCGAYSPRLR----NGDASKSKLFIMPLHDKYATKNSAIKLPTNFSSVKEQTEHGTW-FA 283
Query: 177 PFDAQQEENSVKPNRKVLSCKQVSYLLKDV------DPSIREEFILSK--DAPFLKCFPV 228
P++ + N K + + +L+ V ++ +F D+ F++ FPV
Sbjct: 284 PWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKGGAKKNVGRQFTKESNVDSLFMRVFPV 343
Query: 229 TPN--------NHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDY-RGRDIELSHLVQDC-L 278
TP N R +E P SH K + N + +++ +D G+ L + V D +
Sbjct: 344 TPARYRPPNFVNGRRSEHPQN-SHYKGMVKSN--KMIRQSIDAGEGKAKFLVNSVCDLQM 400
Query: 279 KISKLHLDKSSRKDSAEVRQKKNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKL 338
++ ++ + S ++ EV + GL + ++GKR + R V++ D +++
Sbjct: 401 HVNNMYDNSKSNSNTNEVANGIKQILEKKEGL--FRKHMMGKRVNYAARTVISPDISLET 458
Query: 339 KEIGIPCQVAERLQISERLNSWNWERLSVCI----------SFRLLEKGELY-VCRKGGL 387
E+G+P A+ L + + S+N+ +L+ + +F E G L + ++
Sbjct: 459 NEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLSKESQE 518
Query: 388 VRIRRIDAL---------ELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISS- 437
RI L + +YR L GD VL NR P++H ++ VKVL +
Sbjct: 519 KRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEK 578
Query: 438 VVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQD 497
+ ++ CS ++ DFDGD ++ + PQ++ A E+ E+ A + Q + ++G L L QD
Sbjct: 579 TLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQD 638
Query: 498 SLTAAHLLMEDSVLLSHLQMQQL------QMFCPHRFLSPDIFKISKDSVWSGKQLFSML 551
+ LL + L + Q + + H ++P + +WSGKQL S
Sbjct: 639 HILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPPPCILKPVPLWSGKQLISAA 698
Query: 552 L--------PPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDF 603
L P + E PSK K+ +G RD ++I R + V
Sbjct: 699 LNQLTIGRAPLNLEA--PSK----IPTKMWGTKGLEITRD------SHVIIRQNEMVAGI 746
Query: 604 LYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQD-TCNFQQLMVD 662
L + G+ + +LY + S L+ +F +++ TC L++
Sbjct: 747 LDKGHFGASSY----GLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDDLLMK 802
Query: 663 S-----HMNFLMSAKDSESTRSLQGEHLS-YEKQRSAALSQASVDAFKHVFWDIQNLAYK 716
+ + L A + T + + LS Y++Q++ ++ + + V + L K
Sbjct: 803 NKEEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARDFFSKALQSEREV-ARLDGLLKK 861
Query: 717 ----YGSK---------------DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSF 757
Y SK N+ M +G+KG+++ Q S LG Q
Sbjct: 862 GLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGK--- 918
Query: 758 RFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDN 817
R P +S +A D + A + V + FLTG+ P + F H + R+ D
Sbjct: 919 RVPRMVSGKTLPSFQAYDASARAGGF-----VMDRFLTGVRPQDYFFHCMAGRE-GLIDT 972
Query: 818 A---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQP 872
A G L R L+ + L YD TVR + G+ ++QF+Y + EIG P
Sbjct: 973 AVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGS-VIQFNYGEDSL-----EIGKTP 1024
Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSE-----------VTNPRLGLPNPTNECSSCGAKD 65
++ +S T + KLSV +I + + +P LG P C++C + D
Sbjct: 13 ISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATC-SLD 71
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C GHFG I+ +P I KLL + C C
Sbjct: 72 FIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHC 108
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 1122 MNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIV 1181
+++ ++ D + + ++I + YG++A Q + + + + G ++ HL+++
Sbjct: 1480 LSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVDKRHLILL 1539
Query: 1182 ANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVD 1241
+ ++ G + LN G+ + +SPF + F + KA+ G D +
Sbjct: 1540 GDYMTFEGGYRALNRIGI------ENNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSS 1593
Query: 1242 ALGWGKVPSVGTGGHFDII 1260
+ G++ GTG F I+
Sbjct: 1594 RIVLGQIVKNGTGS-FTIV 1611
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 138/583 (23%), Positives = 249/583 (42%), Gaps = 78/583 (13%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRL-LEKG 377
GKR + R VV+ DPN+ + E+G+P +A+ + + + WN +R+ I + G
Sbjct: 311 GKRVNFSARTVVSPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPG 370
Query: 378 ELYVCRKGGLVRIRR--------IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALT 429
YV R G +IR ++ L+ G I+ R L DGDIVL NR PS+H S++A
Sbjct: 371 ANYVIRPDGR-KIRAYNETKDVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHE 429
Query: 430 VKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGR 489
V+VLP + +N C P++ DFDGD ++ ++ Q +R E L+ + +++ + R
Sbjct: 430 VRVLPYKT-FRLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKTLMRVQDHILSPRF-R 487
Query: 490 NLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFS 549
+L S +++ H + L S + + P +P + ++ W+ K++FS
Sbjct: 488 DLSSGVYTTISQEHTSSQGKRLFS----VRSRPPDPQEGRAPPPDREGRE--WTVKEIFS 541
Query: 550 MLLPPDFEYTFPSK---------------DVY--ISGGKLISAE-GSSWLRDYEGNLFQY 591
M+LP D + ++ D Y I G+LI+ + G +
Sbjct: 542 MVLPDDLNMVYLAEICRKCDECLEMDWENDAYVVIENGQLITGVIDEKAYGAFAGKILDQ 601
Query: 592 LIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650
++K Y D +FL +A ++ + G T S +D + + R I LR A
Sbjct: 602 IVKEYGSDAAKEFLDSATKLAIAGIMHAGFTTSTNDEEIPEEAKER------IEAHLRNA 655
Query: 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL--SYEKQRSAALSQASVDAFKHVFW 708
+ + ++ L+ A ++ L G L + E + L +A + +
Sbjct: 656 E-----------ARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEAKDKSGE---- 700
Query: 709 DIQNLAYKYGSKD-NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAA 767
+A Y D N + M G++G +L L Q + C+G Q + R
Sbjct: 701 ----IAESYFDMDENHAVIMALTGARGAMLNLTQITACVGQQ---SVHGGRITRGYDNRT 753
Query: 768 WNRLRAGDNTECAKSYIPSAVVENSFLTG-LNPLECFIHSVTSRDSSFSDNADLPGTLTR 826
+ G+ ++ ++ S+ E+S L + E + + S G + R
Sbjct: 754 LPHFKKGELGAKSRGFVHSSYKEDSILLEFMGGREGLVDTAIRTAQS--------GYMQR 805
Query: 827 RLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIG 869
RL+ ++DL +G V + G I+Q + +G + G
Sbjct: 806 RLVNALQDLTVDENGRVVDNRG-VIIQTRFGEDGVDPAKSDYG 847
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 15 GILTGIS---LGISTDTEKEKLSVMEIGAV-----------SEVTNPRLGLPNPTNECSS 60
GIL IS G+ + + K+SV +I +E+ +PRLG+ + C S
Sbjct: 3 GILKKISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGSSLRCRS 62
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
CGAK + C GHFG I ++H F I K+L+SIC KC I
Sbjct: 63 CGAKGGE-CPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRI 106
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 141/629 (22%), Positives = 245/629 (38%), Gaps = 114/629 (18%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL--SVCISFRLL 374
++GKR D R V+ D I EIGIP A +L + + WN + L +V +
Sbjct: 432 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVH 491
Query: 375 EKGELYVCRKGGLVRIRRIDALEL-------------------GDIIYRPLTDGDIVLIN 415
+ + G + +D + I+ R + +GDI+L+N
Sbjct: 492 PGASMVINEDGSRTALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLN 551
Query: 416 RPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
R P++H S+ A ++LP V+ ++ C ++ DFDGD ++ + PQ+ R E L
Sbjct: 552 RQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVL 611
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL------QMFCPHRFL 529
D+Q + + G+ L L QD + + + + +L + L
Sbjct: 612 ACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLL 671
Query: 530 SPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDY----- 584
SP I K +W+GKQ+ S LL P + ++ G +W+++
Sbjct: 672 SPSILK--PFPLWTGKQVVSTLLI----NIIPEDHIPLNLSGKAKITGKAWVKETPRSVP 725
Query: 585 ---------------EGNLFQYLIKR--YRDKVLDFLYAAQEV----------------L 611
EG L ++ + Y ++ E+
Sbjct: 726 GFNPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLF 785
Query: 612 CEWLSV-RGMTVSLSDLYLASHS-CSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLM 669
+L + RG T+ + D+ + + R+ +++E + C Q V + +N
Sbjct: 786 TAYLQLYRGFTLGVEDILVKPKADVKRQRIIEESTH--------CGPQ--AVRAALNLPE 835
Query: 670 SAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYG----SKDNSLL 725
+A E Q HL +++ + + H +I +G +NSL
Sbjct: 836 AASYDEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENSLQ 895
Query: 726 AMFKAGSKGNLLKLVQHSLCLG---LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKS 782
M ++G+KG+ + +Q S LG L+ PL + +G + C +
Sbjct: 896 MMVQSGAKGSTVNTMQISCLLGQIELEGRRPPL---------------MASGKSLPCFEP 940
Query: 783 Y--IPSA--VVENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDL 835
Y P A V FLTG+ P E F H + R+ D A G L R ++ + L
Sbjct: 941 YEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGRE-GLVDTAVKTSRSGYLQRCIIKHLEGL 999
Query: 836 CTAYDGTVRNAYGNQIVQFSYNIEGTSTP 864
YD TVR++ G+ +VQF Y +G P
Sbjct: 1000 VVQYDLTVRDSDGS-VVQFLYGEDGLDIP 1027
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1593 EVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ LN G+ S SSP Q F +A G+ D L+ L GKV
Sbjct: 1653 VYKPLNRFGI------RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVV 1706
Query: 1250 SVGTG 1254
GTG
Sbjct: 1707 RGGTG 1711
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 12 VPSGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPR-----------------LGLPNP 54
+P L GIS G+ + E +KLSV I TNPR LG +
Sbjct: 7 MPWRRLQGISFGMYSAEELKKLSVKSI------TNPRYLDSLGNPSANGLYDLALGPADS 60
Query: 55 TNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
CS+C +D C GH G I+ P T+ +P + LL C C +
Sbjct: 61 KEVCSTC-VQDFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 146/619 (23%), Positives = 242/619 (39%), Gaps = 94/619 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL--SVCISFRLL 374
++GKR D R V+ D I EIGIP A +L + + WN + L +V +
Sbjct: 439 MMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVH 498
Query: 375 EKGELYVCRKGGLVRIRRIDALEL-------------------GDIIYRPLTDGDIVLIN 415
+ + G + +DA + ++ R + +GDI+L+N
Sbjct: 499 PGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVCRHVKNGDILLLN 558
Query: 416 RPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
R P++H S+ A ++LP V+ ++ C ++ DFDGD ++ + PQ+ R E L
Sbjct: 559 RQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVL 618
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL------QMFCPHRFL 529
D+Q + + G+ L L QD + + + + Q +L +
Sbjct: 619 ACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLF 678
Query: 530 SPDIFKISKDSVWSGKQLFSMLL----PPDFEYTFPSKDVYISGGKLISAEGSSWLRDY- 584
P I K +W+GKQ+ S LL P D+ S I G K E + D+
Sbjct: 679 PPAILK--PFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAKI-GSKAWVKEKPRPIPDFD 735
Query: 585 ------------EGNLFQYLIKR--YRDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLA 630
EG L ++ + Y ++ E+ S R +T L+ L+ A
Sbjct: 736 PDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTC-LARLFTA 794
Query: 631 SHSCSRKILM-----------DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRS 679
R + D + + E C Q V + ++ +A E
Sbjct: 795 YLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQ--AVKAALSLPETASCDEIQGK 852
Query: 680 LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYG----SKDNSLLAMFKAGSKGN 735
Q HLS +++ + + H +I G +N+L M ++G+KG+
Sbjct: 853 WQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGS 912
Query: 736 LLKLVQHSLCLG---LQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSY--IPSA--V 788
+ +Q S LG L+ PL + +G + C + Y P A
Sbjct: 913 TVNTMQISCLLGQIELEGRRPPL---------------MASGKSLPCFEPYEFTPRAGGF 957
Query: 789 VENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRN 845
V FLTG+ P E F H + R+ D A G L R ++ + L YD TVR+
Sbjct: 958 VTGRFLTGIRPPEFFFHCMAGRE-GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRD 1016
Query: 846 AYGNQIVQFSYNIEGTSTP 864
+ G+ +VQF Y +G P
Sbjct: 1017 SDGS-VVQFLYGEDGLDIP 1034
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 1130 DMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATG 1189
+++D R + ++I + YGI+A L+ ++ + G + P HL +VA+ + G
Sbjct: 1590 EILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1649
Query: 1190 EFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249
+ LN G+ S SSP Q F +A G+ D L+ L GKV
Sbjct: 1650 VYKPLNRFGI------QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVV 1703
Query: 1250 SVGTG 1254
GTG
Sbjct: 1704 KGGTG 1708
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 24/106 (22%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSEVTNPR-----------------LGLPNPTNECS 59
L GIS G+ + E +KLSV I TNPR LG + C+
Sbjct: 12 LQGISFGMYSAEELKKLSVKSI------TNPRYVDYLGNPSANGLYDLALGPADSKEVCA 65
Query: 60 SCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTI 105
+C +D C GH G I P T+ +P+ + LL C C +
Sbjct: 66 TC-VQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHML 110
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 141/603 (23%), Positives = 240/603 (39%), Gaps = 86/603 (14%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCI------- 369
++GKR + R V++ DPNI+ EIG+P A +L E + ++N L +
Sbjct: 471 MMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKW 530
Query: 370 --SFRLLEKGELYVCRKGGLVRIRR------------IDALELGDIIYRPLTDGDIVLIN 415
+ ++ + V G V R+ + L +YR + + D+VL+N
Sbjct: 531 PGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMN 590
Query: 416 RPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTEL 475
R P++H S++ V+VLP + ++ ++ DFDGD ++ + PQ AR E L
Sbjct: 591 RQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNL 650
Query: 476 VALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFC--PHR------ 527
D Q + SG + L QD ++A L + Q QQ C P
Sbjct: 651 ANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRS 710
Query: 528 ---FLSPDIFKISKDSVWSGKQLFSMLL----PPDF-------------EY----TFPSK 563
L P IFK +W+GKQ+ + +L PPD EY + ++
Sbjct: 711 KIVTLPPTIFKPY--PLWTGKQIITTVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENE 768
Query: 564 DVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKV-LDFLYAAQEVLCEWLSVRGMTV 622
++ G L S + + L + Y +V L + +++ T
Sbjct: 769 VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGRLFTNYITATAFTC 828
Query: 623 SLSDLYLASHSCSRK--ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSL 680
+ DL L + + IL + G A + N + D+ A D E + L
Sbjct: 829 GMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDK---DT------PADDPELLKRL 879
Query: 681 QGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKD----NSLLAMFKAGSKGNL 736
Q + + +S L + + + + G+ NS+ AM +G+KG+
Sbjct: 880 Q--EILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSN 937
Query: 737 LKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTG 796
+ + Q +CL Q +L R P +S + + A Y V+ F +G
Sbjct: 938 VNVSQ-IMCLLGQQALE--GRRVPVMVSGKTLPSFKPYETDAMAGGY-----VKGRFYSG 989
Query: 797 LNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQ 853
+ P E + H + R+ D A G L R L + + +YD ++R+A G +VQ
Sbjct: 990 IKPQEYYFHCMAGRE-GLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGT-LVQ 1047
Query: 854 FSY 856
F Y
Sbjct: 1048 FMY 1050
Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 23/106 (21%)
Query: 17 LTGISLGISTDTEKEKLSVMEIGAVSEVTNPRL--GLPNPT--------------NECSS 60
+T + GI T E LS +I TNP + L +P N CS+
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQI------TNPTVLDNLGHPVSGGLYDLALGAFLRNLCST 64
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIR 106
CG D K C GH G I+ P +P F + + L + C C R
Sbjct: 65 CGL-DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFR 109
Score = 35.8 bits (81), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 1140 DNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGL 1199
+++ + YG++A + + + S ++ HL ++A+ ++ G ++ N +G+
Sbjct: 1544 NDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM 1603
Query: 1200 ALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDI 1259
+ +S F++ + KA + L + GK+ +VGTG FD+
Sbjct: 1604 ------ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGS-FDV 1656
Query: 1260 I 1260
+
Sbjct: 1657 L 1657
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 16/220 (7%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE- 375
++GKR D R V++GDPN+ L ++G+P +A L E + +N RL+ + E
Sbjct: 344 LMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEH 403
Query: 376 KGELYVCRKGGLVRIRRID----------ALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425
G YV R G RID AL+ G + R L D D VL NR PS+H S+
Sbjct: 404 PGAKYVIRDTG----DRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSM 459
Query: 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQ 485
+ VKV+P S+ +N SP++ DFDGD ++ ++PQ+ R EL+E+ A+ Q+++
Sbjct: 460 MCHRVKVMPYSTF-RLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSP 518
Query: 486 QSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQMFCP 525
QS + ++ + QD+L + + + + Q+ + + P
Sbjct: 519 QSNKPVMGIVQDTLCGVRKMTLRDIFIEYDQVMNMLYWIP 558
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N++ M +GSKG+ + + Q S C+G Q R P + + D + +K
Sbjct: 573 NNVKQMVVSGSKGSFINISQMSACVGQQIVEGK---RIPFGFADRSLPHFTKDDYSPESK 629
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTAY 839
+ VENS+L GL P E F H++ R+ G + RRL+ + D+ Y
Sbjct: 630 GF-----VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHY 684
Query: 840 DGTVRNAYGNQIVQFSYNIEGT 861
DGT RN+ G+ I+QF Y +G
Sbjct: 685 DGTTRNSLGD-IIQFVYGEDGV 705
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ +PRLG + +C +CG +D C GHFG I+ + H F++ I K+ +C C
Sbjct: 54 LNDPRLGSIDRNFKCQTCG-EDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHC 111
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 147/611 (24%), Positives = 249/611 (40%), Gaps = 97/611 (15%)
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERL-SVCISFRLLE 375
++GKR + R V++ DPNI+ EIG+P A +L E + +N+ + + I+
Sbjct: 479 MMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKW 538
Query: 376 KGELYVCRKGGLV------RIRRIDAL----------------------ELGDIIYRPLT 407
G ++ + G + I + AL +YR +
Sbjct: 539 PGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVR 598
Query: 408 DGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIG 467
+GD++++NR P++H S++A ++LP + ++ C+ ++ DFDGD ++ + PQ+
Sbjct: 599 NGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTN 658
Query: 468 ARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL------- 520
AR E + D Q + SG L L QD + L + + QQL
Sbjct: 659 ARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKP 718
Query: 521 ---QMFCPHRFLSPDIFKISKDSVWSGKQLFSMLL----PPDFEYTFPSKDVYISGG--K 571
M+ + L P I + W+GKQ+ S +L P D + G
Sbjct: 719 DETGMYGRIKTLPPAIQR--PGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVPGKYWS 776
Query: 572 LISAEGSSWLRDYEGNLFQYLIKR--YRDKVLDFLYAAQE----------------VLCE 613
S EGS D G L ++ + + +++ E +
Sbjct: 777 PDSEEGSVLFDD--GELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLFTA 834
Query: 614 WLSVRGMTVSLSDLYLASHSCS--RKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSA 671
+ +RG T + DL L + R++L + +GL A + + L DS + L++A
Sbjct: 835 YAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASE---YVGLSTDSPIA-LLNA 890
Query: 672 KDSESTRS---LQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMF 728
E R LQG + K + L+ + ++ D + Y N + M
Sbjct: 891 NLEEVYRDDEKLQGLDAAM-KGKMNGLTSSIINK---CIPDGLLTKFPY----NHMQTMT 942
Query: 729 KAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAV 788
+G+KG+ + + Q S LG Q R P +S + + + + +I S
Sbjct: 943 VSGAKGSNVNVSQISCLLGQQELEGR---RVPLMVSGKSLPSFVPYETSAKSGGFIAS-- 997
Query: 789 VENSFLTGLNPLECFIHSVTSRDSSFSDNA---DLPGTLTRRLMFFMRDLCTAYDGTVRN 845
FLTG+ P E + H + R+ D A G L R LM + LC YD TVR+
Sbjct: 998 ---RFLTGIAPQEYYFHCMAGRE-GLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRD 1053
Query: 846 AYGNQIVQFSY 856
+ G+ IVQF Y
Sbjct: 1054 SDGS-IVQFHY 1063
Score = 47.4 bits (111), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 1138 HPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAK 1197
+ ++I + YG++A + + S G + P HL ++A+ ++ G + N
Sbjct: 1565 YTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRM 1624
Query: 1198 GLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHF 1257
G+ +SPF + F +AA G VD+L L G+V + GTG F
Sbjct: 1625 GIEYN------TSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGS-F 1677
Query: 1258 DII 1260
DI
Sbjct: 1678 DIF 1680
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 24/106 (22%)
Query: 14 SGILTGISLGISTDTEKEKLSVMEIGAVSEVTNPRL--GLPNPTNE-------------- 57
S + + GI + EK+SV +I NP L L +PTN
Sbjct: 8 SSEIKSVKFGIYDVDDVEKISVKQI------VNPVLLDNLNHPTNGGLYDLALGPYLKNS 61
Query: 58 -CSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
C++C D + C GHFG I P HP F S + LL S C C
Sbjct: 62 VCATCHL-DERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYC 106
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 132/547 (24%), Positives = 212/547 (38%), Gaps = 112/547 (20%)
Query: 394 DALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDF 453
++L DI+YR L D +L NR PS+H S++ V+ + + NP+ CSPF+ DF
Sbjct: 665 NSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNA-VIHENRTFSFNPVVCSPFNADF 723
Query: 454 DGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLS 513
DGD ++ + Q AR E L+ + +I+ + G ++ L QD LT +LL + ++
Sbjct: 724 DGDEMNIFYMQGQEARAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKGIFMT 783
Query: 514 HLQMQQLQMFCPHRFLSPDIF------------------------KISKDSV-------- 541
Q +C H D F +D+V
Sbjct: 784 R------QEYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCL 837
Query: 542 -----------WSGKQLFSMLLPP-DFE-------------------YTFPSKDVYI--- 567
+SGKQ+ S+L+ DF+ D YI
Sbjct: 838 SQPCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKDSDRRALSVNDDYIIIQ 897
Query: 568 SGGKLISAEGSSWLRDYEGNLFQYLIKRYRD-KVLDFLYAAQEVLCEWLSVRGMTVSLSD 626
+ L+ ++L + +F +L++ Y + +V +L G T+ + D
Sbjct: 898 NSEHLVGRLTKTFLASSKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNYGFTIGIDD 957
Query: 627 LYLASHSCSRK-ILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHL 685
+ + +K +++ E G +AQ+ +D ES +
Sbjct: 958 VMPSQRVLGKKEVIVQE---GYEKAQEKI-----------------RDYESGKLEAIPGS 997
Query: 686 SYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAGSKGNLLKLVQHSLC 745
+ ++ A L+Q +V +A K N L M GSKG+ + + Q +
Sbjct: 998 TVQETLEATLNQ----ILSNVRESCAQIALKELHFTNKPLIMSLCGSKGSPINIAQMIII 1053
Query: 746 LGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIH 805
LG Q S R P + + AK +I NSF TGL P E H
Sbjct: 1054 LG-QQSFG--GSRAPDDFYTRSTPYFYHYSKEPNAKGFI-----LNSFYTGLLPFEFLAH 1105
Query: 806 SVTSRDS---SFSDNADLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS 862
+ RD S AD G L RRL+ + DL +YD TVRN+ +VQF + +G
Sbjct: 1106 ARAGRDGVIDSACKTAD-TGYLQRRLVKCLEDLSVSYDFTVRNS-KKSVVQFRFGHDGFD 1163
Query: 863 TPTGEIG 869
E+G
Sbjct: 1164 PIKLEVG 1170
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 40 AVSEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSIC 99
A + V + RLGL + +C++CG KD K C GHFG I + HP ++D +L+ +C
Sbjct: 61 ATNGVLDKRLGLSDKVGKCATCG-KDTKMCIGHFGTISLALPVFHPGLINDARTMLSIVC 119
Query: 100 PKCKTIR 106
P C ++
Sbjct: 120 PFCSRVK 126
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 1132 IDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEF 1191
ID+TR+ +NI GI+A + +++ + G + H+ ++A+ + G
Sbjct: 1531 IDFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRV 1590
Query: 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSV 1251
+G GL + S + + A F G AA VD G +++ GK S+
Sbjct: 1591 LGFTRFGLTKMKADSVI----MLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSM 1646
Query: 1252 GTG 1254
GTG
Sbjct: 1647 GTG 1649
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/442 (24%), Positives = 186/442 (42%), Gaps = 66/442 (14%)
Query: 446 CSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505
C P++ DFDGD ++ ++PQ+ AR E L+ ++K +++ + G ++ D ++ A+LL
Sbjct: 912 CPPYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISGAYLL 971
Query: 506 MEDSVLLSHLQMQQLQMFCPHRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSK-- 563
+ + PD + + ++SGK++FS LP + +K
Sbjct: 972 TSNYFTKDEATLILRSGGIKDELWEPDKVE-NGVPLYSGKKIFSKALPKGLNLRYKAKIC 1030
Query: 564 -------------DVY--ISGGKLISAEGSSWLRDYEGNLFQY-LIKRYRDKV-LDFLYA 606
D Y I G+LI E L + ++K + + FL +
Sbjct: 1031 RKCDVCKKEECEYDAYVVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFGPEAGRKFLDS 1090
Query: 607 AQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMN 666
A ++ + +RG T + D L + + EI L EA++ +
Sbjct: 1091 ATKMAIRAVMLRGFTTGIDDEDLPEEA------LKEIEKVLDEAEE-----------KVK 1133
Query: 667 FLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLA 726
++ + L G L+ E+ R A +S +A +A +Y DN +
Sbjct: 1134 EIIEKYERGELELLPG--LNLEESREAYISNVLREARDKA----GAIAERYLGLDNHAVI 1187
Query: 727 MFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFR------FPHELSCAAWNRLRAGDNTECA 780
M G++GN+L L Q + CLG Q FR PH GD A
Sbjct: 1188 MAVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPH---------FEKGDLG--A 1236
Query: 781 KSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADLP--GTLTRRLMFFMRDLCTA 838
+S+ V +S+ GL+P E F H++ R+ G + RRL+ ++DL T
Sbjct: 1237 RSH---GFVRSSYKKGLSPTEFFFHAMGGREGLVDQAVRTAQSGYMQRRLINALQDLKTE 1293
Query: 839 YDGTVRNAYGNQIVQFSYNIEG 860
+DGTVR++ G ++QF Y +G
Sbjct: 1294 FDGTVRDSRG-IMIQFKYGEDG 1314
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 26/137 (18%)
Query: 319 GKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE 378
GKR + R V++ DP + + E+G+P VA+ L + E++ +N ER+ +LL G
Sbjct: 318 GKRVNFSSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIERIR-----QLLRNGS 372
Query: 379 L------YVCRK----GGLVRIRRIDALE-----------LGDIIYRPLTDGDIVLINRP 417
YV RK G + ++ E GDI+ R L DGDIVL NR
Sbjct: 373 EKHPGVNYVIRKMIGRDGTEQEYKVKITESNKDFWAENIREGDIVERHLMDGDIVLYNRQ 432
Query: 418 PSIHPHSLIALTVKVLP 434
PS+H S++A V+VLP
Sbjct: 433 PSLHRMSIMAHRVRVLP 449
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 44 VTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCK 103
+ + RLG+ +P C +CG + + C GHFG I+ ++H F I K+L ++CP C
Sbjct: 48 LMDTRLGVIDPGLVCKTCGGRIGE-CPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCG 106
Query: 104 TI 105
+
Sbjct: 107 RV 108
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila
melanogaster GN=RpI1 PE=1 SV=2
Length = 1642
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 26/268 (9%)
Query: 304 ISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWE 363
I SGL I+ ++GKR + R V+T DPNI + EIGIP A++L + WN
Sbjct: 403 IEKKSGL--IRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVT 460
Query: 364 RL-SVCISFRLLEKGELYVCRKGGLV---------RIRRIDALELGD------IIYRPLT 407
L + ++ + G Y+ K G + + L L + I++R +
Sbjct: 461 ELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVL 520
Query: 408 DGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIG 467
+GD++L+NR PS+H S++ ++L ++ C ++ DFDGD ++ + PQ+
Sbjct: 521 NGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEV 580
Query: 468 ARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQL------Q 521
AR E LV + + + G L L QD + + L + QQL Q
Sbjct: 581 ARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQ 640
Query: 522 MFCPHRFLSPDIFKISKDSVWSGKQLFS 549
+ + L P I K + +WSGKQ+ S
Sbjct: 641 LKKDIKLLPPTILKPA--VLWSGKQILS 666
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 1131 MIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGE 1190
++D R + ++I + YGI+A Q + + + G + HL ++A+ ++ G
Sbjct: 1516 ILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGT 1575
Query: 1191 FVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPS 1250
F L+ KG+ +HS SSP Q F + AA G D L L G
Sbjct: 1576 FQPLSRKGM----EHS--SSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVR 1629
Query: 1251 VGTGG 1255
GTG
Sbjct: 1630 NGTGA 1634
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 722 NSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAK 781
N+L M +G+KG+++ +Q S LG + R P +S + + + + +
Sbjct: 870 NNLQLMVLSGAKGSMVNTMQISCLLG---QIELEGKRPPLMISGKSLPSFTSFETSPKSG 926
Query: 782 SYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSD--NADLPGTLTRRLMFFMRDLCTAY 839
+I + F+TG+ P + F H + R+ G L R L+ + L Y
Sbjct: 927 GFI-----DGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHY 981
Query: 840 DGTVRNAYGNQIVQFSYNIEG 860
D TVR++ N +VQF Y +G
Sbjct: 982 DLTVRDS-DNSVVQFLYGEDG 1001
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 20 ISLGISTDTEKEKLSVMEIGAVSEVTNPRLGLPNP--------------TNECSSCGAKD 65
+ + TD E KLSV+++ ++ +T LG P + C +C
Sbjct: 16 LEFAVFTDQEIRKLSVVKV--ITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTC--LK 71
Query: 66 RKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKC 102
+ C GH G I+ + +P+F+ + +LL C C
Sbjct: 72 LQDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHC 108
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 154/362 (42%), Gaps = 50/362 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ +LG + R + G+ ++ L E+G P A LQ++E + +N RL + +
Sbjct: 310 IRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRL---MPYF 366
Query: 373 LLEKGELYVCRK---------GGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
L K + C + + +++ LE+GDI+YR + GD+ NR PS+
Sbjct: 367 LNGKRQYPGCSRVYKQITQSVHDIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERS 426
Query: 424 SLIALTVKVL--PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S+ + VL P S +N C+ ++ DFDGD ++ ++P ++ +RVE L ++
Sbjct: 427 SIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNW 486
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ---MFCPHRFLSPDIFKISK 538
I+ +S + QDS + LL + + M +L +F + P S
Sbjct: 487 FISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGKNVMNKLHAMGLFQTTQTDPPCFANYSP 546
Query: 539 DSVWSGKQLFSMLL------------------PPDFEYTFPSKDVYISGGKLIS------ 574
+ GK + SMLL P Y I G+LI
Sbjct: 547 TDLLDGKSVVSMLLKQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKK 606
Query: 575 --AEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS 631
GSS G ++ + +RY + L ++A Q++ ++ G TVS +D+ L
Sbjct: 607 AVGAGSS------GGIYHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTP 660
Query: 632 HS 633
+
Sbjct: 661 EA 662
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 18/198 (9%)
Query: 1057 ETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELY-LRVSMSGQCHIT 1115
E I + V+ LL + ++G IK +++ K + D+ G+L L + + + T
Sbjct: 1244 EKIAVNVVDKLLNSTIRGIPGIKNANVV-----KLMRHRVDAQGKLVRLDNIYAIKTNGT 1298
Query: 1116 SLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILP 1175
+++ A+++D ID +I YGI+A Q ++ + + + D G N
Sbjct: 1299 NIFGAMLDDN------IDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGPN--H 1350
Query: 1176 EHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDN 1235
HLL+ A+ ++ TG+ L GL R+ S+V ++ S+P AA AV+
Sbjct: 1351 RHLLMYADLMTRTGQVTSLEKAGLN-AREPSNV---LLRMALSSPVQVLTDAAVDSAVNP 1406
Query: 1236 LQGSVDALGWGKVPSVGT 1253
+ G G VP +GT
Sbjct: 1407 IYGIAAPTLMGSVPRIGT 1424
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 17 LTGISLGISTDTEKEKLSVMEIG----------AVSEVTNPRLGLPNPTNECSSCGAKDR 66
+ + I+ D + ++ VME+ A + + R+G + +C +C + R
Sbjct: 8 IAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC-SHQR 66
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKT-----------IRKERQKGAGS 115
K C GH G ++ +L P F+++I + L IC C IR +R A S
Sbjct: 67 KQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVDLKRYEHLIRPKRLIEAAS 126
Query: 116 SRKE--QPRVCK 125
S+ E Q VCK
Sbjct: 127 SQTEGKQCYVCK 138
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South
Africa/Pretoriuskop Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 154/362 (42%), Gaps = 50/362 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ +LG + R + G+ ++ L E+G P A LQ++E + +N RL + +
Sbjct: 310 IRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRL---MPYF 366
Query: 373 LLEKGELYVCRK---------GGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
L K + C + + +++ LE+GDI+YR + GD+ NR PS+
Sbjct: 367 LNGKRQYPGCSRVYKQITQSVHDIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERS 426
Query: 424 SLIALTVKVL--PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S+ + VL P S +N C+ ++ DFDGD ++ ++P ++ +RVE L ++
Sbjct: 427 SIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNW 486
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ---MFCPHRFLSPDIFKISK 538
I+ +S + QDS + LL + + M +L +F + P S
Sbjct: 487 FISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGKNVMNKLHAMGLFQTTQTDPPCFANYSP 546
Query: 539 DSVWSGKQLFSMLL------------------PPDFEYTFPSKDVYISGGKLIS------ 574
+ GK + SMLL P Y I G+LI
Sbjct: 547 TDLLDGKSVVSMLLRQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKK 606
Query: 575 --AEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS 631
GSS G ++ + +RY + L ++A Q++ ++ G TVS +D+ L
Sbjct: 607 AVGAGSS------GGIYHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTP 660
Query: 632 HS 633
+
Sbjct: 661 EA 662
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 18/198 (9%)
Query: 1057 ETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELY-LRVSMSGQCHIT 1115
E I + V+ LL + ++G IK +++ K + D+ G+L L + + + T
Sbjct: 1244 EKIAVNVVDKLLNSTIRGIPGIKNANVV-----KLMRHRVDAQGKLVRLDNIYAIKTNGT 1298
Query: 1116 SLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILP 1175
+++ A+++D ID +I YGI+A Q ++ + + + D G N
Sbjct: 1299 NIFGAMLDDN------IDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGPN--H 1350
Query: 1176 EHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDN 1235
HLL+ A+ ++ TG+ L GL R+ S+V ++ S+P AA AV+
Sbjct: 1351 RHLLMYADLMTRTGQVTSLEKAGLN-AREPSNV---LLRMALSSPVQVLTDAAVDSAVNP 1406
Query: 1236 LQGSVDALGWGKVPSVGT 1253
+ G G VP +GT
Sbjct: 1407 IYGIAAPTLMGSVPRIGT 1424
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 17 LTGISLGISTDTEKEKLSVMEIG----------AVSEVTNPRLGLPNPTNECSSCGAKDR 66
+ + I+ D + ++ VME+ A + + R+G + +C +C + R
Sbjct: 8 IAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC-SHQR 66
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKT-----------IRKERQKGAGS 115
K C GH G ++ +L P F+++I + L IC C IR +R A S
Sbjct: 67 KQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVDLKRYEHLIRPKRLIEAAS 126
Query: 116 SRKE--QPRVCK 125
S+ E Q VCK
Sbjct: 127 SQTEGKQCYVCK 138
>sp|Q65215|RPB1_ASFM2 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-107 PE=3 SV=2
Length = 1450
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 154/362 (42%), Gaps = 50/362 (13%)
Query: 313 IKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFR 372
I+ +LG + R + G+ ++ L E+G P A LQ++E + +N RL + +
Sbjct: 310 IRKSLLGSQVWSISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRL---MPYF 366
Query: 373 LLEKGELYVCRK---------GGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPH 423
L K + C + + +++ LE+GDI+YR + GD+ NR PS+
Sbjct: 367 LNGKRQYPGCSRVYKQITQSVHDIEGLKQDFRLEVGDILYRDVVTGDVAFFNRQPSLERS 426
Query: 424 SLIALTVKVL--PISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481
S+ + VL P S +N C+ ++ DFDGD ++ ++P ++ +RVE L ++
Sbjct: 427 SIGVHRIVVLENPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNW 486
Query: 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQLQ---MFCPHRFLSPDIFKISK 538
I+ +S + QDS + LL + + M +L +F + P S
Sbjct: 487 FISTKSSGPVNGQVQDSTVGSFLLTRTNTPMGKNVMNKLHAMGLFQTTQTDPPCFANYSP 546
Query: 539 DSVWSGKQLFSMLL------------------PPDFEYTFPSKDVYISGGKLIS------ 574
+ GK + SMLL P Y I G+LI
Sbjct: 547 TDLLDGKSVVSMLLKQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKK 606
Query: 575 --AEGSSWLRDYEGNLFQYLIKRY-RDKVLDFLYAAQEVLCEWLSVRGMTVSLSDLYLAS 631
GSS G ++ + +RY + L ++A Q++ ++ G TVS +D+ L
Sbjct: 607 AVGAGSS------GGIYHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTP 660
Query: 632 HS 633
+
Sbjct: 661 EA 662
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 36/207 (17%)
Query: 1057 ETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITS 1116
E I + ++ LL + ++G IK +++ K + D+ G+L + +
Sbjct: 1244 EKIAVNMVDKLLNSTIRGIPGIKNANVV-----KLMRHRVDAQGKL---------ARLDN 1289
Query: 1117 LWSALMNDCHQIMDMIDWTRSHPDNIRSFCLA----------YGIDAGLQFFLTNLESAI 1166
+++ N + M+D DNI + + YGI+A Q ++ + + +
Sbjct: 1290 IYAIKTNGTNIFGAMLD------DNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVM 1343
Query: 1167 SDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIK 1226
D G N HLL+ A+ ++ TG+ L GL R+ S+V ++ S+P
Sbjct: 1344 GDKGPN--HRHLLMYADLMTRTGQVTSLEKAGLN-AREPSNV---LLRMALSSPVQVLTD 1397
Query: 1227 AAKAGAVDNLQGSVDALGWGKVPSVGT 1253
AA AV+ + G G VP +GT
Sbjct: 1398 AAVDSAVNPIYGIAAPTLMGSVPRIGT 1424
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 24/132 (18%)
Query: 17 LTGISLGISTDTEKEKLSVMEIG----------AVSEVTNPRLGLPNPTNECSSCGAKDR 66
+ + I+ D + ++ VME+ A + + R+G + +C +C + R
Sbjct: 8 IAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC-SHQR 66
Query: 67 KACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKT-----------IRKER--QKGA 113
K C GH G ++ +L P F+++I + L IC C IR +R + +
Sbjct: 67 KQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVDLKRYEHLIRPKRLVEAAS 126
Query: 114 GSSRKEQPRVCK 125
G + +Q VCK
Sbjct: 127 GQTEGKQCYVCK 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,030,704
Number of Sequences: 539616
Number of extensions: 23019358
Number of successful extensions: 52349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 49011
Number of HSP's gapped (non-prelim): 2309
length of query: 1443
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1313
effective length of database: 121,419,379
effective search space: 159423644627
effective search space used: 159423644627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)