Query 000525
Match_columns 1443
No_of_seqs 359 out of 2226
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 15:55:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000525.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_300-304//hhsearch_pdb/000525hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_A DNA-directed RNA polyme 1.0 1 1 2288.0 58.0 1151 10-1267 9-1457(1752)
2 1twf_A B220, DNA-directed RNA 1.0 1 1 2175.8 81.9 1141 10-1268 7-1452(1733)
3 4ayb_A DNA-directed RNA polyme 1.0 1 1 1585.1 54.2 775 12-875 1-868 (880)
4 1hqm_D DNA-directed RNA polyme 1.0 1 1 1519.5 18.3 954 15-1256 3-1219(1265)
5 2a6h_D DNA-directed RNA polyme 1.0 1 1 1396.9 30.6 797 194-1259 456-1481(1524)
6 3lu0_D DNA-directed RNA polyme 1.0 1 1 1375.1 33.0 1067 1-1256 1-1363(1407)
7 3qqc_A DNA-directed RNA polyme 1.0 1 1 483.4 15.1 284 12-357 64-407 (436)
8 4ayb_C DNA-directed RNA polyme 1.0 1 1 452.4 18.0 333 852-1264 55-393 (395)
9 2k0m_A Uncharacterized protein 1.0 1 1 221.2 4.7 90 1330-1421 10-99 (104)
10 3qqc_A DNA-directed RNA polyme 1.0 1 1 48.4 2.0 43 1207-1249 389-431 (436)
No 1
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=2288.05 Aligned_cols=1151 Identities=22% Similarity=0.367 Sum_probs=929.4
Q ss_pred CCCCCEEEEEEEEECCCHHHHHHCCCEEEECC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87783001058998389699974464087048------------987889999999999878899999987889661144
Q 000525 10 LEVPSGILTGISLGISTDTEKEKLSVMEIGAV------------SEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIK 77 (1443)
Q Consensus 10 ~~~~~~~I~~I~F~i~S~eEI~klSv~eIt~~------------~GL~DpRLG~~~~~~~C~TCg~~~~~~CpGHFGhIe 77 (1443)
.+++.++|++|+||++|++||+++||++|+++ |||+|||||+++++..|+|||. +..+|||||||||
T Consensus 9 s~~~~~~i~~i~Fg~~S~eeI~~~Sv~~I~~~~~~d~~~~~P~~~Gl~D~rlG~~~~~~~C~TCg~-~~~~CpGHFGHIE 87 (1752)
T 3h0g_A 9 SSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDRQFKCQTCGE-TMADCPGHFGHIE 87 (1752)
T ss_dssp CSSCCCCCCCBEECCCCHHHHHHHCCCCCCCTTCTTCSSSSSCCSSSSSSSCCCSSSSCCCTTSCC-SSSSCCCCCEECC
T ss_pred CCCCCEEEEEEEEECCCHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEE
T ss_conf 767611652689945998999972746885600024556877789975712368899997899999-8783788514664
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH----HCC------------CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47322340228899999720143321146730343----011------------34644633643546888888543112
Q 000525 78 FPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKG----AGS------------SRKEQPRVCKYCVRNPAQWYPRMRFK 141 (1443)
Q Consensus 78 L~~PVfHp~f~~~i~~IL~~iC~~C~~lll~~~~k----~l~------------~~~~~~~~C~~C~~~~~~~~p~i~~~ 141 (1443)
|++||||||||+.+++||+|+|++|++|++++... .++ ..|+....|..+... .. -.+.
T Consensus 88 La~PVfHpgF~~~I~kILr~vC~~C~klll~~~~~~f~~~lrlrd~k~r~~~V~~~ck~k~~Ce~~~~~--~~---~~~~ 162 (1752)
T 3h0g_A 88 LAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSA--GS---DNFD 162 (1752)
T ss_dssp CCSCBCCHHHHHHHHHHSSSSCTTTCCCSCCSCSHHHHHHHHSSCTTTTHHHHHHHHHHCCCCCSSTTC--CS---SCCC
T ss_pred CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC--CC---CCHH
T ss_conf 153358400668999999999987542046633699999997558999999999981435446787754--42---1000
Q ss_pred CCCCCCCCCCCEEEHHHHHHHCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHC----
Q ss_conf 466444584320100322200137888654---3344576431112346897411299999998313893457310----
Q 000525 142 LSSKDLSGKTAIIVEIDEKLSKKNKKLPDD---YWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEF---- 214 (1443)
Q Consensus 142 ~s~~~~~~k~~ii~e~~~~~~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~LsP~~V~~iLk~I~~e~~~~~---- 214 (1443)
.. . .+ ....+.+|.+.++.++.+ .|..++....+++. ..++.|+|.+|+++|++|+++|++.+
T Consensus 163 ~~-~-~~-----~~~~~~gCG~~qP~IRKeglkl~~~~k~~k~~~~~---~~k~~LtP~eVl~ifk~IsdeD~~lLGl~~ 232 (1752)
T 3h0g_A 163 LS-N-PS-----ANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDL---PEKRLLSPLEVHTIFTHISSEDLAHLGLNE 232 (1752)
T ss_dssp SS-C-CC-----CCCSSCSSCCCCCCCEEETTEEECCBCCSSSSCBC---SSCCCCCHHHHHHHHHHSCHHHHHHSSCCS
T ss_pred CC-C-CC-----CCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCC---CCCEECCHHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 01-2-22-----34568986885872786365899997255565544---466322899999999962988999848986
Q ss_pred -CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHH-H
Q ss_conf -47988414421556899898644456555664233334479999999850980---------788999999999865-3
Q 000525 215 -ILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRD---------IELSHLVQDCLKISK-L 283 (1443)
Q Consensus 215 -~~rpE~liLt~LPVPPn~iRPs~~~~~~~ng~~~~eDdlT~~l~~Iv~~~~~~---------~~~~~~~~~~~~~~~-~ 283 (1443)
+.+||||||++|||||+++||++.+++ .++.+||+|.+|.+|++.|... ..+.....+.+|... .
T Consensus 233 ~~~rPewmiL~vLPVpPp~vRPsv~ldg----~~~~edDLt~~l~~II~~N~~Lk~~~~~gap~~~~~~~~~~LQ~~v~~ 308 (1752)
T 3h0g_A 233 QYARPDWMIITVLPVPPPSVRPSISVDG----TSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQLLQFHVAT 308 (1752)
T ss_dssp SSCCGGGSSBSSCEECCGGGSCCCCCSS----SCCCCCTTTTHHHHHHHHHHHHHGGGGCCSSSTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHEEEECCCCCCCCCCCCEECCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 6798455673202459987667167489----766778289999999998799999987305067899999999999998
Q ss_pred HCCCCCCCCH----------HHHHHC-CCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 0156668841----------576501-58766676784112100147788988760683898775331005688786427
Q 000525 284 HLDKSSRKDS----------AEVRQK-KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQ 352 (1443)
Q Consensus 284 ~~~~~~~~~~----------~~~~q~-~~~~~~~~~G~r~~R~~l~GKRv~~s~RsVI~pdp~l~~~evgiP~~~a~~lt 352 (1443)
+.|+.....+ .++.|+ +||.| |||+|||||||||||||||+|||+|+++|||||..||++||
T Consensus 309 ~~dn~~~~~~~~~~~~~rp~k~~~~~lkgK~G-------rfR~nl~GKRVd~s~RsVI~~dP~l~~~evGvP~~~A~~Lt 381 (1752)
T 3h0g_A 309 YMDNEIAGQPQALQKSGRPLKSIRARLKGKEG-------RLRGNLMGKRVDFSARTVITGDPNLSLDELGVPRSIAKTLT 381 (1752)
T ss_dssp TTCTTCSSCCCCCSSSSCCCCCHHHHHTCSSS-------SSTTTTSSCCCSSEEEEEEEEETTSCTTBCBCCHHHHTSCC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-------CCCCCCCCCCCCCCCCEEECCCCCCCCCEEECHHHHHHHCC
T ss_conf 60677878863224678887516766402011-------01344445556876631344899765552137099998658
Q ss_pred CCEEECHHHHHHHHHHHC-CCCCCCCCCEEE-ECCEEEEECC-----CCCCCCCCEEECEECCCCEEEEECCCCCCCCCC
Q ss_conf 303103023898665310-242336861475-0891778102-----233457777852000473699808998884554
Q 000525 353 ISERLNSWNWERLSVCIS-FRLLEKGELYVC-RKGGLVRIRR-----IDALELGDIIYRPLTDGDIVLINRPPSIHPHSL 425 (1443)
Q Consensus 353 ~pe~V~~~Ni~~L~~~~~-~~~~~~~~~~~~-~~~~~~~~~~-----~~~l~~g~~v~R~l~dgd~vl~NRqPsLHk~si 425 (1443)
|||+||+||+++|++++. ....++||.++. ++|..++++. ...|++||+|+|||+|||+|||||||||||+||
T Consensus 382 ~Pe~vt~~ni~~l~~lv~nG~~~~pga~~v~~~~~~~~~l~~~~~~~~~~l~~g~~v~r~l~~gd~Vl~NRqPtLHr~si 461 (1752)
T 3h0g_A 382 YPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSM 461 (1752)
T ss_dssp CCCBCCTTTHHHHHHHHHHCTTSSSCEEEEECTTCCBCCTTTTCSCCCCCCCSSCEEEECCCSCCEEEEECSSCCSGGGE
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECHHHCHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCHHHC
T ss_conf 87655679999999999739865667302663788476412101144541576737874423697689816862031012
Q ss_pred CCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 21007990599658845667899989888881453027984389999997174688545899996211331487778764
Q 000525 426 IALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLL 505 (1443)
Q Consensus 426 ma~~v~v~~~~~t~r~n~~~c~pynADFDGDemn~h~Pqs~~a~aE~~~L~~~~~~~isp~~g~p~~~l~QD~l~g~~lL 505 (1443)
|||+|||+|+ +||||||+||+||||||||||||+|+|||++|||||.+||++++||++|++|+|+++++||+|+|+|+|
T Consensus 462 ma~~~~v~~g-ktirlh~~vC~~yNADFDGDeMnvHvPqs~eAraEa~~Lm~~~~nilsP~~G~Pi~~~~QD~vlg~y~l 540 (1752)
T 3h0g_A 462 MGHRIRVMPY-STFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKF 540 (1752)
T ss_dssp EEEECCCCSS-SSEEEEGGGSGGGTCCSSSCEEEEECCCSTTHHHHHHHTCCTTTTSEETTTTEESCCCCTHHHHHHHHH
T ss_pred CCCCCEEECC-CEEEECHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCCEEEECCHHHHHEEEE
T ss_conf 1446356068-636606522787667610002466316888899999998537132614899980266411033211220
Q ss_pred CCCCCCCCHHHHHHHHHHCC---CCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCC----------CCCCEEEECCEE
Q ss_conf 16864359999999996199---96578813113688543078888513999983113----------897289927900
Q 000525 506 MEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF----------PSKDVYISGGKL 572 (1443)
Q Consensus 506 T~~d~fl~~~~~~~l~~~~~---~~lp~PaI~Kp~~~~lwTGKQifs~~lp~~~~~~~----------~~~~v~i~nGel 572 (1443)
|.+|+|++++++++|+|+.. ..+|+|||+|| +++||||||||++||.+++|.. .++.|+|+||||
T Consensus 541 T~~~~f~~~~e~~~l~~~~~~~~~~~~~pai~kp--~~~wtGkqifs~ilp~~~~~~~~~~~~~~~~~~d~~v~i~~gel 618 (1752)
T 3h0g_A 541 SLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKP--KVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIENGEI 618 (1752)
T ss_dssp HSTTCEEETHHHHGGGGCSSSCCSSCCCCSBCSS--SCEEETTHHHHTTSCSSBCEECCCSSCCSSCTTTCSEEECBSCE
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECC--CCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEEECCEE
T ss_conf 0465558999999999850223784576615457--67874666776667687773004655567687767378876707
Q ss_pred CCC-CCCCCCCCCCCCHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 035-576532478765999999982199-999999999999999732564000286544654202899999999529999
Q 000525 573 ISA-EGSSWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREA 650 (1443)
Q Consensus 573 l~~-~~k~~lg~~~~~li~~l~~~~G~~-a~~fl~~~q~l~~~~L~~~GFSigi~D~~~~~~~~~~k~~~~~i~~~~~~a 650 (1443)
+++ ++|+++|++.++|+|.++++||.+ |+.|||.+|+|+++||+++|||||++|++++++... ++...+.+|
T Consensus 619 l~g~l~K~~lg~~~~~li~~i~~~~G~~~~~~~ld~~~~l~~~~l~~~GfSigi~D~~~~~~~~~------~~~~~i~~a 692 (1752)
T 3h0g_A 619 IYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMK------EVTRTVKEA 692 (1752)
T ss_dssp EEECCSHHHHSSCTTCHHHHSSSSSCTTTHHHHHHHHHHHHHHHHHHHCCCCCGGGGSCCSHHHH------HHHHHHHTT
T ss_pred EECCCCHHHHCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEECHHHCCCCHHHHH------HHHHHHHHH
T ss_conf 75310267734575429999999979999999999999999999986680430633265889999------999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 86310235677767755200477655334110011179888799889999989898899999998608999952000003
Q 000525 651 QDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKA 730 (1443)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~L~~~~~~~~~~~~~~i~~~~~~~~~~~N~l~~Mv~s 730 (1443)
++.++ + ...+|..+.++..+++. .+.++|.+++.+|+ ++++++++.+++.+.++|++++|+.|
T Consensus 693 ~~~v~--~----~~~~~~~g~l~~~~g~~---~~e~~e~~v~~~l~--------~~~~~~~~~~~~~l~~~N~~~~M~~S 755 (1752)
T 3h0g_A 693 RRQVA--E----CIQDAQHNRLKPEPGMT---LRESFEAKVSRILN--------QARDNAGRSAEHSLKDSNNVKQMVAA 755 (1752)
T ss_dssp THHHH--H----HHTTTTTTCCCCCSSCC---TTHHHHHHHHHHHH--------HHHHHHHHHHHTTSCSSCTTTHHHHH
T ss_pred HHHHH--H----HHHHHHCCCCCCCCCCC---HHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 99999--9----99998709875588986---89999999999999--------99999999999864888869998662
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 78655022767451222101379986566865420000248899984235895444410233337998356787403588
Q 000525 731 GSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSR 810 (1443)
Q Consensus 731 GSKGS~~Nl~Q~~~~lGqQ~~~g~~~~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~GfV~~sf~~GL~p~EfffH~magR 810 (1443)
|||||++|++||+||+|||.++|+ |+|.++++|+||+|.++|..+.+ +|||.|||++||+|+||||||||||
T Consensus 756 GakGs~~ni~Q~~~~~Gqq~~~Gk---rIp~g~~~rtLP~f~k~d~~~~a-----~GfV~~sF~~GL~p~EfFfhtmggR 827 (1752)
T 3h0g_A 756 GSKGSFINISQMSACVGQQIVEGK---RIPFGFKYRTLPHFPKDDDSPES-----RGFIENSYLRGLTPQEFFFHAMAGR 827 (1752)
T ss_dssp CSSCCHHHHHHHHTCCCCCCSTTS---SSCCCSTTSSSTTSCSSCCSTTT-----SSCCSSCTTTCCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCC-----CCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 566478889999855388825786---68788888668888888998433-----7610101347998899999744103
Q ss_pred CCCCCCCC--CCCCCCHHHHHHHHHHEEEEECCEEECCCCCEEEEEEECCCCCC-------------------------C
Q ss_conf 75212334--79885018999987403763356487047761788873157999-------------------------9
Q 000525 811 DSSFSDNA--DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTS-------------------------T 863 (1443)
Q Consensus 811 eGlidta~--a~sGYLqRrLik~LeDl~v~YDgTVRns~G~~Iiq~~yg~~g~~-------------------------~ 863 (1443)
|||+|||+ |+||||||||||+||||+|+|||||||+.| .||||.|||||.+ .
T Consensus 828 eGLiDTAvKTA~SGYLqRRLVk~leDv~V~YDgTVRns~g-~ivQF~YGeDGlD~~~~e~q~~~~~~~s~~~f~~~~~~~ 906 (1752)
T 3h0g_A 828 EGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMG-DIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEKKYRID 906 (1752)
T ss_dssp TTTTHHHHTTTHHHHHHHHHHHHHTTCEEETTTEEECTTS-CEEESSSSSSCBCGGGEEEEECTTTSCCHHHHTTTSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCEEECCCC-CEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHCCC
T ss_conf 2246765402767501799999875248850780686899-489874677776867741355540247879999884212
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000525 864 -------------------------------------------------------------------------------- 863 (1443)
Q Consensus 864 -------------------------------------------------------------------------------- 863 (1443)
T Consensus 907 ~~~~~~~~~~~~~~l~~~~~~~~~l~~E~~~l~~dr~~lr~~i~~~~~~~~~lP~N~~R~i~~~~~~f~~~~~~~s~l~p 986 (1752)
T 3h0g_A 907 LMEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLP 986 (1752)
T ss_dssp TTTTCCGGGTSCSCCTTSCSSTHHHHHHHHHHHHHHTTSSSSSSSCSCCEEEEESCHHHHTTTTTTTSCCCTTSCCCCCH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 25543246778887505788999999999999999999888751043101368714999999999862778676577988
Q ss_pred -----------------------------------------------------------------------CCCCCCCCE
Q ss_conf -----------------------------------------------------------------------996558800
Q 000525 864 -----------------------------------------------------------------------PTGEIGDQP 872 (1443)
Q Consensus 864 -----------------------------------------------------------------------~~~~~~Ge~ 872 (1443)
.+.++|||+
T Consensus 987 ~~~~~~v~~~~~~l~~~~g~d~l~~~~~~na~~l~~~~lr~~l~~k~~~~~~~l~~~~~~~~~~~~~~~y~~a~v~pGe~ 1066 (1752)
T 3h0g_A 987 SDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEM 1066 (1752)
T ss_dssp HHHHHHHHHHHTTCCCSCCCSTTTTHHHHTSSHHHHHHHTTSSSHHHHHHSSCCCHHHHHHHHHHHHHHHHTTBCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999865402587402056563528788898876654444342167689999999999999998734576651
Q ss_pred ECCCCCCCHHHHHHHCC---CCCCCC---CCCCCCCCCHHHHCCCCCCCCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 01455234148988200---465420---034543331122104998777764762101110001234711438899850
Q 000525 873 VGSLSACAISEAAYSAL---DQPISL---LETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNH 946 (1443)
Q Consensus 873 VG~~aAqSigEp~tq~l---~~~~~~---l~~~gl~rLkEil~~~~~~k~~~~~~~l~Ls~~~~k~~~~~e~~a~~Vk~~ 946 (1443)
||++||||||||+|||| +|++++ ++|.|+|||+||+|++++.+ +|+|+++|.+.+.+ .+++|+.|+.+
T Consensus 1067 VG~iaAQSIgEp~TQMTLnTFHfAGvas~NVTlGVPRLkEIInask~ik--TP~mtv~L~~~~~~----d~e~A~~v~~~ 1140 (1752)
T 3h0g_A 1067 VGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIK--TPSLTIYLMPWIAA----NMDLAKNVQTQ 1140 (1752)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCSGGGHHHHHTTCSCCS--CCCCEECCCSSSCS----SSTTTHHHHTT
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCC--CCEEEEEECCCCCC----CHHHHHHHHHH
T ss_conf 1034540268812346577664404435565557500999986632799--97289995675555----89999999976
Q ss_pred HCCCCHHHHHCEEEEEECCCCCC------------------------CCCCCCEEEEEEEEHHHHHHCCCCHHHHHHHHH
Q ss_conf 11002620011279998189986------------------------556686079998209889980999899999999
Q 000525 947 LECLMLSDIVSTSMIIYSPQTGS------------------------MKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLY 1002 (1443)
Q Consensus 947 Le~itL~di~~~i~i~y~p~~~~------------------------~~~~sp~v~~i~Ldke~l~~~~L~i~~i~~~i~ 1002 (1443)
||+++|++++..++|.|+|+..+ ....++|+++++||++.+.+++|+++.|.+++.
T Consensus 1141 ie~t~L~~v~~~~~i~~~p~~~~~~i~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~rl~l~~~~~~~~~l~~~~I~~~i~ 1220 (1752)
T 3h0g_A 1141 IEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIA 1220 (1752)
T ss_dssp SSCCSSCSCCSCEEEECCCSTTCCCCSSSCSHHHHHHHTTCSSTTCSSCSCCCCEEEEECCTTSSTTTTCCHHHHTTSGG
T ss_pred HCCEEHHHHEEEEEEEEECCCCCEEEEECHHHHHHHHCCCHHHHHCCCCCCCCEEEEEEECHHHHHHCCCCHHHHHHHHH
T ss_conf 14078987110789999468651688625899999862423331001001465258998549999874999999999998
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCC----------CCCHHHHHHHHHHHCCCCCCCEE
Q ss_conf 84466664210368950452376565221135799349999951355----------44324299999986022336255
Q 000525 1003 RQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENF----------KRTSIDLETIQMWVMPFLLKTVV 1072 (1443)
Q Consensus 1003 ~~~~~~~~~lk~~~~~i~i~~~~c~~~~~~~~~~~~~~i~v~~~~~~----------~~~~~~l~~l~~~iip~ll~~vv 1072 (1443)
+.++ .++.+..+ ++. .+..+|++.+.... .+....|+.+.+.+++ +++|
T Consensus 1221 ~~~~----------~~~~v~~~-----d~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~l~---~~~i 1279 (1752)
T 3h0g_A 1221 ESFE----------RDLFTIWS-----EDN---ADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLE---SISL 1279 (1752)
T ss_dssp GSST----------TSCCEECC-----CTT---CSSCEEEECCCCCSCCCCCSSCCCSCSCHHHHHHHHHHTT---CCCS
T ss_pred HHCC----------CCEEEEEC-----CCC---CCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC---CEEE
T ss_conf 6436----------87358515-----777---6630699985155444432223332189999999996311---2588
Q ss_pred ECCCCCEEEEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCH
Q ss_conf 21256118998513422346788-99975199999321554440147788541003444101334577839999998809
Q 000525 1073 KGFREIKKVDILWKDKQKASKSH-DDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGI 1151 (1443)
Q Consensus 1073 kG~~~I~rv~I~~~~~~~~~~~~-~~~~~el~l~~~~s~~~~~~~~~~~ll~~~~~~~~~id~~rt~~n~I~ei~~~lGI 1151 (1443)
+|+++|+||+|.+.++......+ -..+.||+|.|+|+| |.+||. +++||++||+||||+||+++|||
T Consensus 1280 ~Gi~~I~rv~i~~~~~~~~~~~g~~~~~~~~~l~teG~n-----------L~~v~~-~~gVD~~rt~sNdI~ei~~vlGI 1347 (1752)
T 3h0g_A 1280 RGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGIN-----------LTEAMT-VEGVDATRTYSNSFVEILQILGI 1347 (1752)
T ss_dssp SCCTTCCCCCEEEEEEEEECSSSCEEEEEEEEEECCSCC-----------CSTTTS-SSSCCTTTCCCSCHHHHHHHSCH
T ss_pred ECCCCCCEEEEECCCCEEECCCCCCCCCCEEEEEECCCC-----------HHHHHC-CCCCCCCCCEECCHHHHHHHHHH
T ss_conf 468996479986366033268875124641799921468-----------999967-69884640854789999998759
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHC
Q ss_conf 99999999999997311697448889999883103212385126554553301478765001122336279999999608
Q 000525 1152 DAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAG 1231 (1443)
Q Consensus 1152 EAAr~~ii~ei~~~~~~~G~~V~~rHl~LlAd~MT~~G~~~gi~r~G~~~~~~~~~~~Spl~~asFe~t~~~l~~AA~~g 1231 (1443)
||||++|++||++||+.||++||+|||+||||+||++|+++||||||+++++. |||++||||+|+++|++||++|
T Consensus 1348 EAAR~~Ii~Ei~~v~~~~G~~Vd~RHl~LlaD~MT~~G~~~~itR~Gi~~~~~-----s~l~~aSFE~T~~~L~~Aa~~g 1422 (1752)
T 3h0g_A 1348 EATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAET-----GALMRCSFEETVEILMDAAASG 1422 (1752)
T ss_dssp HHHHHHHHHHHHTTSCSSSCCCCHHHHHHHHHHHTSSSSCCCCCTTSCSCCCS-----HHHHHHHHSCCTHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999984388778999999788761387688612344305798-----8899864897999999999726
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 975788920000048998765752008897068888
Q 000525 1232 AVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRT 1267 (1443)
Q Consensus 1232 ~~D~l~gvs~~ii~G~~~~~GTgg~f~ll~~~~~~~ 1267 (1443)
+.|+|.|||||||||+++++|| |.|||+++.+.+.
T Consensus 1423 ~~D~l~gvse~Ii~G~~~~~GT-G~fdll~~~~~l~ 1457 (1752)
T 3h0g_A 1423 EKDDCKGISENIMLGQLAPMGT-GAFDIYLDQDMLM 1457 (1752)
T ss_dssp CCBCCCCSTTGGGTCSCCCSBT-TSCEECCCHHHHH
T ss_pred CCCCCCCHHHHHHCCCCCCCCC-CEEEEEECHHHHC
T ss_conf 8666648057765388767766-3278985788836
No 2
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=1.00 E-value=1 Score=2175.78 Aligned_cols=1141 Identities=22% Similarity=0.349 Sum_probs=916.6
Q ss_pred CCCCCEEEEEEEEECCCHHHHHHCCCEEEECC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87783001058998389699974464087048------------987889999999999878899999987889661144
Q 000525 10 LEVPSGILTGISLGISTDTEKEKLSVMEIGAV------------SEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIK 77 (1443)
Q Consensus 10 ~~~~~~~I~~I~F~i~S~eEI~klSv~eIt~~------------~GL~DpRLG~~~~~~~C~TCg~~~~~~CpGHFGhIe 77 (1443)
.+++..+|++|+||++|||||+++|+.||++| +||+|+|||+++++..|+|||. +..+|||||||||
T Consensus 7 ~~~~~~~i~~I~f~l~SpeeIr~~Sv~eI~~pet~~~~~~~P~~~GL~d~rlG~~~~~~~C~tCg~-~~~~C~GHfGHIE 85 (1733)
T 1twf_A 7 SSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQE-GMNECPGHFGHID 85 (1733)
T ss_dssp CCSCBCCCCEEECCBCCHHHHHHTCCCCCCCSCCSCTTSCCSCCSSSSCSSSCCCTTCCCSSSCCC-CTTSCCCCCCCEE
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCCEEE
T ss_conf 767745125499983898999972816871422114666777768874744376467887088899-8870798460343
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHH---HH-CC------------CCCCCCCCC----------------C
Q ss_conf 4732234022889999972014332114673034---30-11------------346446336----------------4
Q 000525 78 FPFTILHPYFLSDIAKLLNSICPKCKTIRKERQK---GA-GS------------SRKEQPRVC----------------K 125 (1443)
Q Consensus 78 L~~PVfHp~f~~~i~~IL~~iC~~C~~lll~~~~---k~-l~------------~~~~~~~~C----------------~ 125 (1443)
|+.|||||+||+.++++|+|||++|++++++... +. +. ..|+....| .
T Consensus 86 La~PV~HigF~k~i~kiLe~VC~~Cskllld~~~~~~~~~L~~~~pk~r~~~v~e~ck~k~~Ce~~~~~~~e~~~~~~~~ 165 (1733)
T 1twf_A 86 LAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRG 165 (1733)
T ss_dssp EEEEEECGGGHHHHHHHHHHBCTTTCCBSCCTTSHHHHHHHTCCSHHHHHHHHHHHHTTCCBCCSEECCSSCTTSCEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 44451159887558999987767516013142258999999710778899999998443541465420000023444457
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 35468888885431124664445843201003222001378886543344576431112346897411299999998313
Q 000525 126 YCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKD 205 (1443)
Q Consensus 126 ~C~~~~~~~~p~i~~~~s~~~~~~k~~ii~e~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LsP~~V~~iLk~ 205 (1443)
.|++. .|.++. . ..+++.+ |. +.....+ ...+.++.|+|.+|+++|++
T Consensus 166 gCGa~----qp~irk----~----gl~l~~e----------------~k---~~~~~~e-~~~~~k~~Ltp~eV~eifk~ 213 (1733)
T 1twf_A 166 GCGNT----QPTIRK----D----GLKLVGS----------------WK---KDRATGD-ADEPELRVLSTEEILNIFKH 213 (1733)
T ss_dssp SCCCB----CCCCEE----C----SSCEEEE----------------EC---SSSSCTT-SCSCEEEEECHHHHHHHHTT
T ss_pred CCCCC----CHHHHH----C----CCCEEEE----------------EC---CCCCCCC-CCHHHHCCCCHHHHHHHHHH
T ss_conf 87876----587774----5----7754776----------------51---0034322-21022014799999999873
Q ss_pred CCHHHHHHC-----CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH---------HH
Q ss_conf 893457310-----4798841442155689989864445655566423333447999999985098078---------89
Q 000525 206 VDPSIREEF-----ILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIE---------LS 271 (1443)
Q Consensus 206 I~~e~~~~~-----~~rpE~liLt~LPVPPn~iRPs~~~~~~~ng~~~~eDdlT~~l~~Iv~~~~~~~~---------~~ 271 (1443)
|+++++..+ ..+||||||++|||||+++||++.+++ .+..+||+|.+|.+|+..|...+. +.
T Consensus 214 I~deD~~lLgl~p~~~rPewmiLtvLPVpPp~vRPsv~ldg----~~~~edDLT~~l~~II~~N~~Lk~~~~~gap~~ii 289 (1733)
T 1twf_A 214 ISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNE----SQRGEDDLTFKLADILKANISLETLEHNGAPHHAI 289 (1733)
T ss_dssp SCHHHHHHTTCBTTTBCGGGGEEEEECCCCTTTSCCCCCSS----SCCCCCHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CCHHHHHHHCCCCCCCCHHEEEEEEECCCCCCCCCCEECCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 89999998478766898020556542269987667566589----86057778999999999999999999747458788
Q ss_pred HHHHHHHHHHH-HHCCCCCCCCHHHHHHCCCCCC----CCCCCC-CHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCH
Q ss_conf 99999999865-3015666884157650158766----676784-11210014778898876068389877533100568
Q 000525 272 HLVQDCLKISK-LHLDKSSRKDSAEVRQKKNIDI----SNSSGL-RWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPC 345 (1443)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~----~~~~G~-r~~R~~l~GKRv~~s~RsVI~pdp~l~~~evgiP~ 345 (1443)
......+|... ...|+.....+. ..++.++.. ..+.|+ .|||+|||||||||||||||+|||+|+++|||||.
T Consensus 290 ~e~~~~LQ~~v~~~~dn~~~~~~~-~~~~~~rp~k~i~~~lkgK~GrfR~nl~GKRVd~s~RsVI~~dP~L~~~evGvP~ 368 (1733)
T 1twf_A 290 EEAESLLQFHVATYMDNDIAGQPQ-ALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPK 368 (1733)
T ss_dssp HHHHHHHHHHHHHHHCCCSSCCCC-CSSCTTCCCCCSTTSCTTTTTTSSGGGTTCSCCSEEEEEEEECTTSCTTEEEEEH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCH
T ss_conf 899999999999985467668874-3457886505678775033311222136655676530477489876266235849
Q ss_pred HHHHHCCCCEEECHHHHHHHHHHHC-CCCCCCCCCEEE-ECCEEEEECCC-----CCCCCCCEEECEECCCCEEEEECCC
Q ss_conf 8786427303103023898665310-242336861475-08917781022-----3345777785200047369980899
Q 000525 346 QVAERLQISERLNSWNWERLSVCIS-FRLLEKGELYVC-RKGGLVRIRRI-----DALELGDIIYRPLTDGDIVLINRPP 418 (1443)
Q Consensus 346 ~~a~~lt~pe~V~~~Ni~~L~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-----~~l~~g~~v~R~l~dgd~vl~NRqP 418 (1443)
.||++|||||+||+||+++|++++. ....++||.++. ++|..++++.. ..|++||+|+|||+|||+|||||||
T Consensus 369 ~~A~~Lt~Pe~vt~~ni~~l~~lv~~g~~~~~ga~~~~~~~g~~~~l~~~~~~~~~~l~~g~~v~r~l~~gd~VllNRqP 448 (1733)
T 1twf_A 369 SIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQP 448 (1733)
T ss_dssp HHHTTCEEEEECCTTTHHHHHHHHHHTTTSSSCEEEEECTTCCEEETTSCTTTTCCCCCTTCEEEEECCTTCEEEEECSS
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCCCHHHHHHCCCCCEEEEEECCCCEEEEECCC
T ss_conf 99985788841348999999999974986677740378278957853223225544046577897651269778980798
Q ss_pred CCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 88845542100799059965884566789998988888145302798438999999717468854589999621133148
Q 000525 419 SIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDS 498 (1443)
Q Consensus 419 sLHk~sima~~v~v~~~~~t~r~n~~~c~pynADFDGDemn~h~Pqs~~a~aE~~~L~~~~~~~isp~~g~p~~~l~QD~ 498 (1443)
||||+|||||+|||+|++ ||||||+||+||||||||||||+|+|||++|||||.+||++++||++|++|+|+++++||+
T Consensus 449 TLHr~si~a~~~~v~~~~-tirlnp~vC~~yNADFDGDeMnvHvPqs~eAraEa~~Lm~~~~nilsP~~G~Pi~~~~QD~ 527 (1733)
T 1twf_A 449 SLHKMSMMAHRVKVIPYS-TFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDT 527 (1733)
T ss_dssp CCSGGGEEEEEEEEESSS-SEEECGGGHHHHTCCSSSCEEEEECCCSHHHHHHHHHHTBGGGGSEETTTTEESCCCCHHH
T ss_pred CCCCCCCEEEEEEECCCC-EEEECHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCC
T ss_conf 646134226789970697-4774765558877661124565105788999999999853734588657998137651222
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHCC---CCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCC----------CCCCE
Q ss_conf 777876416864359999999996199---96578813113688543078888513999983113----------89728
Q 000525 499 LTAAHLLMEDSVLLSHLQMQQLQMFCP---HRFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF----------PSKDV 565 (1443)
Q Consensus 499 l~g~~lLT~~d~fl~~~~~~~l~~~~~---~~lp~PaI~Kp~~~~lwTGKQifs~~lp~~~~~~~----------~~~~v 565 (1443)
|+|+|+||.+|+|++++++++++++.. ..+|+|||+|| .++||||||||++||.+++|.. .++.|
T Consensus 528 v~g~y~lT~~~~f~~~~e~~~~~~~~~~~~~~~~~pai~kp--~~~wtGkqifs~ilp~~~~~~~~~~~~~~~~~~d~~v 605 (1733)
T 1twf_A 528 LCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKP--KPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGM 605 (1733)
T ss_dssp HHHHHHHHSTTCEEEHHHHHHHHHHSTTCCSCCCCCSBCSS--SCEEEHHHHHHHHSCTTCCEEECCTTCCTTCTTCCSE
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEE
T ss_conf 10003410475569999999999832331585377431076--1575288788876789974133687765578665648
Q ss_pred EEECCEECCC-CCCCCCCCCCCCHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 9927900035-576532478765999999982199-99999999999999973256400028654465420289999999
Q 000525 566 YISGGKLISA-EGSSWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEI 643 (1443)
Q Consensus 566 ~i~nGell~~-~~k~~lg~~~~~li~~l~~~~G~~-a~~fl~~~q~l~~~~L~~~GFSigi~D~~~~~~~~~~k~~~~~i 643 (1443)
+|+||||+++ ++|+++|++.++|+|.++++||.+ |+.|||.+|+|+++||+++|||||++|++++++.. +++
T Consensus 606 ~i~~gel~~g~ldKk~lg~~~~~li~~i~~~~G~~~a~~~ld~l~~l~~~~l~~~GfSigi~D~~~~~~~~------~~i 679 (1733)
T 1twf_A 606 LIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTM------REI 679 (1733)
T ss_dssp EEETTEEEESCCCHHHHSSCTTSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCBCCCGGGGCCCHHHH------HHH
T ss_pred EEECCCEEEEECCHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHCCCCHHHH------HHH
T ss_conf 98678289830166785457018999999986999999999999999999998766698556537598999------999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 95299998631023567776775520047765533411001117988879988999998989889999999860899995
Q 000525 644 FYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNS 723 (1443)
Q Consensus 644 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~L~~~~~~~~~~~~~~i~~~~~~~~~~~N~ 723 (1443)
...+.+|++.+. + ...+|..+.++..+++. .+.++|.++..+| .++++++++.+++++.++|+
T Consensus 680 ~~~i~~a~~~v~--~----~~~~~~~g~l~~~pg~~---~~e~~e~~v~~il--------~~~~d~~~~~~~~~l~~~N~ 742 (1733)
T 1twf_A 680 TETIAEAKKKVL--D----VTKEAQANLLTAKHGMT---LRESFEDNVVRFL--------NEARDKAGRLAEVNLKDLNN 742 (1733)
T ss_dssp HHHHHHHHHHHH--H----HHHHHHHTCCCCCTTCC---HHHHHHHHHHHHH--------HHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHH--H----HHHHHHHCCCCCCCCCC---HHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999--9----99999809976588987---7999999999999--------99999999999986265887
Q ss_pred CEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 20000037865502276745122210137998656686542000024889998423589544441023333799835678
Q 000525 724 LLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECF 803 (1443)
Q Consensus 724 l~~Mv~sGSKGS~~Nl~Q~~~~lGqQ~~~g~~~~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~GfV~~sf~~GL~p~Eff 803 (1443)
+++|+.||||||++|++||+||||||.++|+ |+|.++++|+||+|.+++..+. ++|||.|||++||+|+|||
T Consensus 743 i~~Ma~SGAKGs~~Ni~Q~~~~~Gqq~~~Gk---rip~g~~~RtLPhf~k~d~~p~-----s~GfI~ssF~~GLtp~EyF 814 (1733)
T 1twf_A 743 VKQMVMAGSKGSFINIAQMSACVGQQSVEGK---RIAFGFVDRTLPHFSKDDYSPE-----SKGFVENSYLRGLTPQEFF 814 (1733)
T ss_dssp HHHHHHHTSSCCHHHHHHHHSCCEECCBTTB---SCCCCBTTBSSTTSCTTCCSTT-----TTTEECSCTTTCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC-----CCCHHHHHHHCCCCHHHHH
T ss_conf 1788504676547769999717677546886---3777888877888777889800-----1661331000246548776
Q ss_pred HHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHEEEEECCEEECCCCCEEEEEEECCCCCCC------------------
Q ss_conf 740358875212334--798850189999874037633564870477617888731579999------------------
Q 000525 804 IHSVTSRDSSFSDNA--DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTST------------------ 863 (1443)
Q Consensus 804 fH~magReGlidta~--a~sGYLqRrLik~LeDl~v~YDgTVRns~G~~Iiq~~yg~~g~~~------------------ 863 (1443)
||||||||||+|||+ |+||||||||||+||||+|+|||||||++| .||||.||+||.+-
T Consensus 815 fh~mggReGLiDTAvKTA~SGYLqRRLVk~ledv~V~yDgTVR~s~g-~IvQF~YGeDGlD~~~~e~~~~~~~~~~~~~f 893 (1733)
T 1twf_A 815 FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLG-NVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAF 893 (1733)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECTTSCEECTTC-CEEESSGGGTTBCGGGEEEEECGGGSSCHHHH
T ss_pred HHHHCCCCCHHHHCEECCCCCCCEEEHHHHHCCEEEEECCCEECCCC-CEEEEEECCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 55431442012200020568851000333325059970586765899-78998713666774210046565001579999
Q ss_pred ---------------------------------------------------------------C----------------
Q ss_conf ---------------------------------------------------------------9----------------
Q 000525 864 ---------------------------------------------------------------P---------------- 864 (1443)
Q Consensus 864 ---------------------------------------------------------------~---------------- 864 (1443)
|
T Consensus 894 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~r~~lr~i~~~~~~~~~~P~ni~r~i~~~~~~f~~ 973 (1733)
T 1twf_A 894 EKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHI 973 (1733)
T ss_dssp HHHHCCCTTCTTTSCCTTTBTTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEESCHHHHHHHHHHHTTC
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99853444563224788888778774036888999999999999889999876305663446871499999988877313
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 000525 865 -------------------------------------------------------------------------------- 864 (1443)
Q Consensus 865 -------------------------------------------------------------------------------- 864 (1443)
T Consensus 974 ~~~~~s~l~p~~~~~~v~~~~~~~~~~~g~d~l~~~~~~n~~~l~~~~~rs~L~~k~~~~~~~l~~~~~~~~l~~i~~ky 1053 (1733)
T 1twf_A 974 DHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQF 1053 (1733)
T ss_dssp CTTSCBCCCHHHHHHHHHHHHTTCCSCCCCSHHHHHHHHHTTHHHHHHHHHHSCHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 55543457889999999999986430158762005555252778888766545455566661778999988889999999
Q ss_pred --CCCCCCCEECCCCCCCHHHHHHHCC---CCCCC---CCCCCCCCCCHHHHCCCCCCCCCCCEEEEEHHHHCCCCCCCC
Q ss_conf --9655880001455234148988200---46542---003454333112210499877776476210111000123471
Q 000525 865 --TGEIGDQPVGSLSACAISEAAYSAL---DQPIS---LLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGF 936 (1443)
Q Consensus 865 --~~~~~Ge~VG~~aAqSigEp~tq~l---~~~~~---~l~~~gl~rLkEil~~~~~~k~~~~~~~l~Ls~~~~k~~~~~ 936 (1443)
+.+.|||+||++||||||||+|||| +|.++ .+.|.|+|||+||++++++.+ +|.|+++|.+...+ .
T Consensus 1054 ~~a~v~pGe~VG~iaAQSigEp~TQMTLnTFHfAGva~~NVTLGVPRLkEIinask~ik--TP~mtv~L~~~~~~----~ 1127 (1733)
T 1twf_A 1054 LRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMK--TPSLTVYLEPGHAA----D 1127 (1733)
T ss_dssp HHHBCCTTCCHHHHHHHHHHHHHTTCCC----------CCSCCHHHHHHHHTTTCSSCS--SCEEEEEBCSSSSS----C
T ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC--CCEEEEEECCCCCC----C
T ss_conf 86557898601567653168853123555444156125574367588999997513789--97389995775432----5
Q ss_pred HHHHHHHHHHHCCCCHHHHHCEEEEEECCCCC-------------C-----------CCCCCCEEEEEEEEHHHHHHCCC
Q ss_conf 14388998501100262001127999818998-------------6-----------55668607999820988998099
Q 000525 937 EYGALEVKNHLECLMLSDIVSTSMIIYSPQTG-------------S-----------MKHFSPWICHFHVRKEIMKRTGL 992 (1443)
Q Consensus 937 e~~a~~Vk~~Le~itL~di~~~i~i~y~p~~~-------------~-----------~~~~sp~v~~i~Ldke~l~~~~L 992 (1443)
+.+|+.|+.+||+++|++++..++|.|+|+.. | ....++|+.+++|+++.+.+++|
T Consensus 1128 ~e~A~~v~~~ie~ttL~dv~~~i~i~~dp~~~~tvi~ed~~~~~~y~~i~~~d~~~~~~~~~~~~lrl~l~~~~~~~~~l 1207 (1733)
T 1twf_A 1128 QEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDL 1207 (1733)
T ss_dssp HHHHHHHHHHHSCEEGGGTEEEEEEEECCCSSSCSSGGGHHHHHTSSCC----------CCCSEEEEEEECHHHHHHTTC
T ss_pred HHHHHHHHHHHCEEEHHHHHHEEEEEECCCCCCEEEECCHHHHHHHHCCCHHHHCCHHHHCCCCEEEEEECHHHHHHCCC
T ss_conf 99999998763114899820167999736766403313223434332256776210032103400589966988976379
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCC-------CCHHHHHHHHHHHCC
Q ss_conf 9899999999844666642103689504523765652211357993499999513554-------432429999998602
Q 000525 993 KEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFK-------RTSIDLETIQMWVMP 1065 (1443)
Q Consensus 993 ~i~~i~~~i~~~~~~~~~~lk~~~~~i~i~~~~c~~~~~~~~~~~~~~i~v~~~~~~~-------~~~~~l~~l~~~iip 1065 (1443)
+++.|.+.+.+..+ .++.+... +.+. +...+.+.+..... +....+..+...+++
T Consensus 1208 ~~~~I~~~i~~~~~----------~~~~~~~~------d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~l~ 1269 (1733)
T 1twf_A 1208 TMGQVGERIKQTFK----------NDLFVIWS------EDND--EKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLE 1269 (1733)
T ss_dssp CHHHHHHHHHHHHG----------GGEEEEEC------CTTS--SSCEEEEEEC----------CCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC----------CCCCEECC------CCCC--CHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999987517----------77512047------7640--001113320267522233320147999999997630
Q ss_pred CCCCCEEECCCCCEEEEEEECCCCCCCCCC-CCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 233625521256118998513422346788-9997519999932155444014778854100344410133457783999
Q 000525 1066 FLLKTVVKGFREIKKVDILWKDKQKASKSH-DDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRS 1144 (1443)
Q Consensus 1066 ~ll~~vvkG~~~I~rv~I~~~~~~~~~~~~-~~~~~el~l~~~~s~~~~~~~~~~~ll~~~~~~~~~id~~rt~~n~I~e 1144 (1443)
+++|+|+|+|+||+|.+.+..+....+ ....+||+|+|+|++ +.++|. .++||++|++||||+|
T Consensus 1270 ---~~~v~Gi~~I~r~~i~~~~~~~~~~~g~~~~~~~~~L~teG~n-----------L~~vl~-~~~VD~~rt~SNdI~e 1334 (1733)
T 1twf_A 1270 ---NITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVN-----------LSEVMT-VPGIDPTRIYTNSFID 1334 (1733)
T ss_dssp ---HCEEESCTTCCCEEEEEEEEEEECTTSSEEEEEEEEEEEESCC-----------HHHHTT-STTBCTTTCBCSCHHH
T ss_pred ---HEEEECCCCCCEEEEECCCCEEECCCCCCCCCCCEEEEEECCC-----------HHHHHC-CCCCCCCCCEECCHHH
T ss_conf ---0477157885479995355312357775245762389960514-----------999960-4772541104345999
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCHHHHCCCCCCHHHH
Q ss_conf 99988099999999999999731169744888999988310321238512655455330147876500112233627999
Q 000525 1145 FCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASF 1224 (1443)
Q Consensus 1145 i~~~lGIEAAr~~ii~ei~~~~~~~G~~V~~rHl~LlAd~MT~~G~~~gi~r~G~~~~~~~~~~~Spl~~asFe~t~~~l 1224 (1443)
|+++|||||||++|++||+.||+.||++||+|||+||||+||++|++.||||+|+++++. |||++||||+|+++|
T Consensus 1335 I~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vd~RHl~LlaD~MT~~G~~~~itR~Gi~~~~~-----S~L~~aSFE~T~~~L 1409 (1733)
T 1twf_A 1335 IMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNT-----GALMRCSFEETVEIL 1409 (1733)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTTTBSSCCCSSSCSSSCSSC-----CTTSSCCSSCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEECCCCHHHHCCCCC-----CCHHHCCHHHHHHHH
T ss_conf 998756999999999999999860586346233432355560076320333132226688-----722103225438999
Q ss_pred HHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 99996089757889200000489987657520088970688888
Q 000525 1225 IKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIYSGEGRTL 1268 (1443)
Q Consensus 1225 ~~AA~~g~~D~l~gvs~~ii~G~~~~~GTgg~f~ll~~~~~~~~ 1268 (1443)
++||.+|+.|+|.||+||||+|+++|+|| |.|||+++.+.++.
T Consensus 1410 ~~Aa~~g~~D~l~gvsenII~G~~~~~GT-G~FdLl~~~~~~~~ 1452 (1733)
T 1twf_A 1410 FEAGASAELDDCRGVSENVILGQMAPIGT-GAFDVMIDEESLVK 1452 (1733)
T ss_dssp HHHHHHTCEECCCSHHHHHHTTCCCSSGG-GSSEEEECSCCC--
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEECHHHCCC
T ss_conf 99875147673555100010477777877-40799971033120
No 3
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A 2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Probab=1.00 E-value=1 Score=1585.07 Aligned_cols=775 Identities=27% Similarity=0.409 Sum_probs=632.7
Q ss_pred CCCEEEEEEEEECCCHHHHHHCCCEEEECC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 783001058998389699974464087048-----------987889999999999878899999987889661144473
Q 000525 12 VPSGILTGISLGISTDTEKEKLSVMEIGAV-----------SEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPF 80 (1443)
Q Consensus 12 ~~~~~I~~I~F~i~S~eEI~klSv~eIt~~-----------~GL~DpRLG~~~~~~~C~TCg~~~~~~CpGHFGhIeL~~ 80 (1443)
|+.++|++|+||++||+||+++|+.||++| |||+|||||+.+++..|+|||. +..+||||||||||+.
T Consensus 1 m~~k~i~~I~f~l~SpeeIr~~S~~eV~~p~t~n~~g~p~~ggl~D~~lG~~~~~~~C~tCg~-~~~~c~ghfGhIeLa~ 79 (880)
T 4ayb_A 1 MSEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN-TLGNCPGHFGHIELVR 79 (880)
T ss_dssp --CEEEEEEEEECCCHHHHHHHTCSCBCCSCCCBSSSSSBCSSSSCGGGCCCSSSCCCTTTCC-CGGGCCCCCEEEEEEE
T ss_pred CCCCEECEEEEEECCHHHHHHHCCEEEECCCEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCC-CCCCCCCCCEEECCCC
T ss_conf 997463559998079999998616499671109999892689977933498999787899899-7789999886346545
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHH--------H---------------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22340228899999720143321146730343--------0---------------113464463364354688888854
Q 000525 81 TILHPYFLSDIAKLLNSICPKCKTIRKERQKG--------A---------------GSSRKEQPRVCKYCVRNPAQWYPR 137 (1443)
Q Consensus 81 PVfHp~f~~~i~~IL~~iC~~C~~lll~~~~k--------~---------------l~~~~~~~~~C~~C~~~~~~~~p~ 137 (1443)
|||||+|++.+.++|+|+|++|++++++.... . +.+.+.....|++|++. .+.
T Consensus 80 PV~h~~f~~~i~~lL~~~c~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~----~~~ 155 (880)
T 4ayb_A 80 PVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEK----QFK 155 (880)
T ss_dssp EEECGGGTTHHHHHHHTSCTTSSCCCSSCCHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHTTCSSCTTTTCC----CCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHCCCH----HHH
T ss_conf 0235648989999982823610488278899999999988753127079999999999874154001220632----466
Q ss_pred CCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHC---
Q ss_conf 31124664445843201003222001378886543344576431112346897411299999998313893457310---
Q 000525 138 MRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEF--- 214 (1443)
Q Consensus 138 i~~~~s~~~~~~k~~ii~e~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LsP~~V~~iLk~I~~e~~~~~--- 214 (1443)
++. +. +.+++.. .+.....|+|.+++++|++|+++++..+
T Consensus 156 i~~---------------~~-----------~~~~~~~-----------~~~~~~~l~~~~~~~~l~~i~~~~~~~l~~~ 198 (880)
T 4ayb_A 156 IKL---------------EK-----------PYNFYEE-----------RKEGVAKLTPSDIRERLEKVPESDVEILGYD 198 (880)
T ss_dssp CEE---------------EE-----------TTEEEEE-----------ETTEEEECCHHHHHHHHTTCCHHHHHHTTCC
T ss_pred HHH---------------CC-----------CCCHHHH-----------HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 552---------------37-----------5778999-----------9999975389999999998689899995888
Q ss_pred --CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH---------HHHHHHHHHHHH-
Q ss_conf --47988414421556899898644456555664233334479999999850980788---------999999999865-
Q 000525 215 --ILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIEL---------SHLVQDCLKISK- 282 (1443)
Q Consensus 215 --~~rpE~liLt~LPVPPn~iRPs~~~~~~~ng~~~~eDdlT~~l~~Iv~~~~~~~~~---------~~~~~~~~~~~~- 282 (1443)
..+||||||++||||||++||++..++ +++.+||+|.+|..|+..|.....+ .......+|...
T Consensus 199 ~~~~~Pewmil~~lPV~Pp~~RP~v~l~~----g~~~~~dl~~~~~~ii~~N~~lk~~~~~~ap~~i~~~~~~~LQ~~V~ 274 (880)
T 4ayb_A 199 PTTSRPEWMILTVLPVPPITIRPSIMIES----GIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQYHVA 274 (880)
T ss_dssp TTTCCSGGGEEEEEEECCSSSSCC---------CCCCCCSSHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHEEEEEEECCCCCCCCHHHCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 76798234487666579998883544078----64135408889999987666655433038826689999999999999
Q ss_pred HHCCCCCCCCH----------HHHHHC-CCCCCCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 30156668841----------576501-5876667678411210014778898876068389877533100568878642
Q 000525 283 LHLDKSSRKDS----------AEVRQK-KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERL 351 (1443)
Q Consensus 283 ~~~~~~~~~~~----------~~~~q~-~~~~~~~~~G~r~~R~~l~GKRv~~s~RsVI~pdp~l~~~evgiP~~~a~~l 351 (1443)
...|+.....+ .++.|+ +||.| +||+|||||||||||||||+|||+|+++|||||..||++|
T Consensus 275 ~l~dn~~~g~~~~~~~~~rp~ksl~~~lkgK~G-------rfR~nl~GKRVd~s~RsVI~~dP~l~~~e~GvP~~~A~~L 347 (880)
T 4ayb_A 275 TYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEG-------RFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTL 347 (880)
T ss_dssp HHHCSCCSSSCCCCCTTSCCCCCHHHHHHSSSS-------THHHHTSSEECSSEEEEEEEECTTSCSSEEEECHHHHTTS
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCH-------HHHHCCCCEEECCCCCEEEECCCCCCCCCCCCCHHHHHHC
T ss_conf 987046778886678887766326666036642-------3330411025435574255079986126158829999767
Q ss_pred CCCEEECHHHHHHHHHHH-CCCCCCCCCCEE-EECCEEEEECC-------CCCCCCCCEEECEECCCCEEEEECCCCCCC
Q ss_conf 730310302389866531-024233686147-50891778102-------233457777852000473699808998884
Q 000525 352 QISERLNSWNWERLSVCI-SFRLLEKGELYV-CRKGGLVRIRR-------IDALELGDIIYRPLTDGDIVLINRPPSIHP 422 (1443)
Q Consensus 352 t~pe~V~~~Ni~~L~~~~-~~~~~~~~~~~~-~~~~~~~~~~~-------~~~l~~g~~v~R~l~dgd~vl~NRqPsLHk 422 (1443)
||||+||+||+++|++++ |....++|+.++ +.+++.+.++. +..|++||+|+|||+|||+|||||||||||
T Consensus 348 t~Pe~vt~~N~~~l~~~v~ng~~~~pga~~~i~~~~~~~~l~~~~~~~~~~~~l~~g~~V~rhl~dgd~VLlNRqPTLHr 427 (880)
T 4ayb_A 348 TVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNRQPSLHR 427 (880)
T ss_dssp EEEEECCTTTHHHHHHHHHHTTSSSSCEEEEECSSCCEEEGGGCSSCTTHHHHCCTTCEEEEECCTTCEEEEECSSCCSG
T ss_pred CCCEEECHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCEEEECCCCCCCC
T ss_conf 87858868799999999974974455336654204627873012014678876065646755521685899637876565
Q ss_pred CCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 55421007990599658845667899989888881453027984389999997174688545899996211331487778
Q 000525 423 HSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAA 502 (1443)
Q Consensus 423 ~sima~~v~v~~~~~t~r~n~~~c~pynADFDGDemn~h~Pqs~~a~aE~~~L~~~~~~~isp~~g~p~~~l~QD~l~g~ 502 (1443)
+|||||+|+|+|+ +||||||+||+||||||||||||+|+|||++|||||.+||++++||+||++|+|+++++||+|+|+
T Consensus 428 ~si~a~~~~l~~g-ktirlhp~vC~~yNADFDGDeMnvHvPqS~eA~aEa~~Lm~~~~nilsP~~G~Pii~~~QD~vlg~ 506 (880)
T 4ayb_A 428 ISMMAHRVRVLKG-LTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGA 506 (880)
T ss_dssp GGEEEEEEEECSS-SSEEECGGGHHHHTCCSSSCEEEEECCCSHHHHHHHHHHSBSGGGCBCSSSSSBCSCCCSHHHHHH
T ss_pred CCEEEEEEECCCC-CEEEECCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 4513223440567-536506200354346766661477516888999999999847201643778983011141078776
Q ss_pred HHHCCCCCCCCHHHHHHHHHHCCC--CCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCC----------------C-CC
Q ss_conf 764168643599999999961999--6578813113688543078888513999983113----------------8-97
Q 000525 503 HLLMEDSVLLSHLQMQQLQMFCPH--RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTF----------------P-SK 563 (1443)
Q Consensus 503 ~lLT~~d~fl~~~~~~~l~~~~~~--~lp~PaI~Kp~~~~lwTGKQifs~~lp~~~~~~~----------------~-~~ 563 (1443)
|+||.+++|++++++++++++... .+|+|||+|| .++|||||+||+++|.++++.. + +.
T Consensus 507 y~lT~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~--~~~~tgkqi~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (880)
T 4ayb_A 507 YLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAP--REYYTGKQVVSAFLPKDFNFHGQANVSSGPRLCKNEDCPHDS 584 (880)
T ss_dssp HHHTSSSCEECHHHHHHHHTTSCCCCCCCSCSEESS--SEEEEHHHHHHTTSCTTCCEEEECTTCSGGGCCSSSCCTTSC
T ss_pred HHHHCCCCCCCHHHHHHHHCCCCEECCCCCCCEECC--EEEECCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 876157555788998655054321023585502255--357616567888723654322225762377333576678765
Q ss_pred CEEEECCEECCC-CCCCCCCC-CCCCHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 289927900035-57653247-8765999999982199-99999999999999973256400028654465420289999
Q 000525 564 DVYISGGKLISA-EGSSWLRD-YEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILM 640 (1443)
Q Consensus 564 ~v~i~nGell~~-~~k~~lg~-~~~~li~~l~~~~G~~-a~~fl~~~q~l~~~~L~~~GFSigi~D~~~~~~~~~~k~~~ 640 (1443)
.|+|+||+|+++ ++|+.+|+ ..++|+|.++++||.+ ++.|||.+++++++|++.+|||||++|+.++++.. +++.
T Consensus 585 ~v~i~~g~l~~g~ldk~~lg~~~~~~li~~i~~~~G~~~t~~~ld~l~~lg~~~lt~~GfSigi~Di~i~~~~~--~~i~ 662 (880)
T 4ayb_A 585 YVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVK--KEIY 662 (880)
T ss_dssp EEEEETTEEEECCCSTTTSSTTCTTSHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHCCCCCGGGGCCCHHHH--HHHH
T ss_pred EEEEECCEEEEEEECCHHHCCCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH--HHHH
T ss_conf 69985765654002001214444420323166650308999999999999999998548750114234650568--9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99995299998631023567776775520047765533411001117988879988999998989889999999860899
Q 000525 641 DEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSK 720 (1443)
Q Consensus 641 ~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~L~~~~~~~~~~~~~~i~~~~~~~~~~ 720 (1443)
+. +.+|++.++ + ....|..+..+..++.. ...++|.+ .++.|.++.+++++.+.+++++
T Consensus 663 ~~----i~~a~~~v~--~----i~~~~~~g~l~~~~g~~---~~e~~e~~--------v~~~l~~~~~~~~~~~~~~l~~ 721 (880)
T 4ayb_A 663 NE----IDRAKVEVD--N----LIQKYKNGELEPIPGRT---LEESLENY--------ILDTLDKLRSTAGDIASKYLDP 721 (880)
T ss_dssp HH----HHHHHHHHH--H----HHHHHHTTCCCCCSSSC---HHHHHHHH--------HHHHHHHHHHHHHHHHHHTSCT
T ss_pred HH----HHHHHHHHH--H----HHHHHHCCCCCCCCCCH---HHHHHHHH--------HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99----999999889--9----99999708875466650---99999999--------9999999999987999850899
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99520000037865502276745122210137998656686542000024889998423589544441023333799835
Q 000525 721 DNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPL 800 (1443)
Q Consensus 721 ~N~l~~Mv~sGSKGS~~Nl~Q~~~~lGqQ~~~g~~~~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~GfV~~sf~~GL~p~ 800 (1443)
.|++++|+.||||||+.|++||+||+|||.++|+ |+|+++++++||+|++++..|+++ |||.|||++||+|+
T Consensus 722 ~N~i~mMa~SGARGS~~ni~Qlagm~Gqq~~~G~---RIprg~~~rtLP~f~~~d~~p~a~-----GfI~ssF~eGLtp~ 793 (880)
T 4ayb_A 722 FNFAYVMARTGARGSVLNITQMAAMLGQQSVRGE---RIKRGYMTRTLPHFKPYDISPEAR-----GFIYSSFRTGLKPT 793 (880)
T ss_dssp TSHHHHHHHHTSSCCSTTHHHHHTCCEECBSSSS---BSCCSBTTBSSTTSCTTCCSTTTT-----SEECSCTTTCCCHH
T ss_pred CCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC-----CEEHHCCCCCCCHH
T ss_conf 9879999543726779999999945045105786---576787667789888789982559-----70720023799879
Q ss_pred HHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHEEEEECCEEECCCCCEEEEEEECCCCCCCCCCCCCCCEECC
Q ss_conf 678740358875212334--798850189999874037633564870477617888731579999996558800014
Q 000525 801 ECFIHSVTSRDSSFSDNA--DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQFSYNIEGTSTPTGEIGDQPVGS 875 (1443)
Q Consensus 801 EfffH~magReGlidta~--a~sGYLqRrLik~LeDl~v~YDgTVRns~G~~Iiq~~yg~~g~~~~~~~~~Ge~VG~ 875 (1443)
|||||||||||||+|||+ |+||||||||||+||||+|+|||||||++| +||||.||+||. +|.....|++|.+
T Consensus 794 EyF~ht~ggRkGL~DTAlKTA~SGYLtRRLVdv~qDv~V~yDgTVR~~~g-~ivqf~YGeDgl-dp~~~~~~~~~~~ 868 (880)
T 4ayb_A 794 ELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYG-EVIQVAYGDDGV-FPMYSAHGKTVDV 868 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTEEECTTSCEEETTT-EEEESSTTTTCB-CTTTSBTTBSCCH
T ss_pred HHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHCCEEEECCCCCCCCCC-CEEEEECCCCCC-CEEECCCCCCCCH
T ss_conf 99996265412187612321200399999999973879956998238999-589985277631-0312245885379
No 4
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=1.00 E-value=1 Score=1519.54 Aligned_cols=954 Identities=17% Similarity=0.184 Sum_probs=649.0
Q ss_pred EEEEEEEEECCCHHHHHHCCCEEEECC------------CCCCCCCC-CCC--------------CCCCCCCCCCCCCCC
Q ss_conf 001058998389699974464087048------------98788999-999--------------999987889999998
Q 000525 15 GILTGISLGISTDTEKEKLSVMEIGAV------------SEVTNPRL-GLP--------------NPTNECSSCGAKDRK 67 (1443)
Q Consensus 15 ~~I~~I~F~i~S~eEI~klSv~eIt~~------------~GL~DpRL-G~~--------------~~~~~C~TCg~~~~~ 67 (1443)
.++++|+||++||+||+++|+.||+.| +||+|+|| |+. +++..|+|||. ...
T Consensus 3 ~~~~~i~~gl~Spe~Ir~~S~geV~~pet~ny~t~kP~~~GLfd~rifGp~k~~~C~Cgkyk~~~~~~~~C~~Cg~-~~~ 81 (1265)
T 1hqm_D 3 KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGV-EVT 81 (1265)
T ss_dssp CCBCCCCCCCCCTTTHHHHTTTCCCCCCC-------------------------------------CCSCSSSSSS-SSC
T ss_pred CCCCEEEEECCCHHHHHHHHEEEECCHHHEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 6313599965898999875379981522032678961678986752368775634648885444779988799898-434
Q ss_pred CC---CCCCCEEECCCCCCCCCCHHH-----------HHHHHHCCCCCCCCCCCCCHH---HHCCCCC----------CC
Q ss_conf 78---896611444732234022889-----------999972014332114673034---3011346----------44
Q 000525 68 AC---EGHFGFIKFPFTILHPYFLSD-----------IAKLLNSICPKCKTIRKERQK---GAGSSRK----------EQ 120 (1443)
Q Consensus 68 ~C---pGHFGhIeL~~PVfHp~f~~~-----------i~~IL~~iC~~C~~lll~~~~---k~l~~~~----------~~ 120 (1443)
+| |||||||||+.||||+||++. +.+.|+|+|++|++++.+... +.+...+ +.
T Consensus 82 ~~~vrrg~~GhIeLa~PV~Hi~y~k~~~s~l~~lL~~~~k~le~v~y~~s~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 161 (1265)
T 1hqm_D 82 RSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLFATELEQVLYFNKYIVLDPKGAVLDGVPVEKRQLLTDXXXXXX 161 (1265)
T ss_dssp CSSSCCCSCCCCCCCSCCCSTTSTTHHHHTTTCTTTHHHHTTSSSCCCCSCCCCSSSCCCTTCCCCTTHHHHTCCCCCCC
T ss_pred CCCCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHCCCHHHHCCEEEECCEEEECCCCHHHHHCCHHHHHHHHHHCCCCC
T ss_conf 26654676613773474356520356567999986678776430751302686368855766427999999865201101
Q ss_pred CCCC----CCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6336----43546-888888543112466444584320100322200137888654334457643111234689741129
Q 000525 121 PRVC----KYCVR-NPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLS 195 (1443)
Q Consensus 121 ~~~C----~~C~~-~~~~~~p~i~~~~s~~~~~~k~~ii~e~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ls 195 (1443)
...+ ..|.. +....+.... ....+.+. ...-.+. . ++.+ .+ ++. . .+....+..-+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~G~~~---~---~~~l-~~-~~l---~--~~~~~~~~~~~~~~ 225 (1265)
T 1hqm_D 162 XXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXID-ARMGAEA---I---QELL-KE-LDL---E--KLERELLEEMKHPS 225 (1265)
T ss_dssp CCCCCSSCCCCCCCCTTSCCCCCC--CCCCCCCC-CCCSHHH---H---HHHH-TH-HHH---C--HHHHHHHTTTCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC--CCCHHHHH-CCCCCHH---H---HHHH-HH-CCH---H--HHHHHHHHHHHHCC
T ss_conf 111111111111111111111112--21023210-4667256---8---8898-73-377---9--89999999986435
Q ss_pred HHHHHHHHCCCCHHHH-HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH---
Q ss_conf 9999998313893457-310479884144215568998986444565556642333344799999998509807889---
Q 000525 196 CKQVSYLLKDVDPSIR-EEFILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS--- 271 (1443)
Q Consensus 196 P~~V~~iLk~I~~e~~-~~~~~rpE~liLt~LPVPPn~iRPs~~~~~~~ng~~~~eDdlT~~l~~Iv~~~~~~~~~~--- 271 (1443)
+.....+|+++..... .....+||||||++|||||+++||++..++ .++.+||+|.+|++|++.|.....+.
T Consensus 226 ~~~~~~~~krl~~~~~f~~~~~~Pewmil~~lPVpPp~~RP~v~l~g----g~~~~~Dln~~~~~Ii~~N~~L~~~~~~~ 301 (1265)
T 1hqm_D 226 RARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDG----GRFATSDLNDLYRRLINRNNRLKKLLAQG 301 (1265)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSSCCSCSSCCCCCSCC----------------CCCGGGTHHHHTHHHHHHHHTSSSSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEECCC----CCEECCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 77778876111166653025898104763125789986766455389----71546706899999999999999999749
Q ss_pred ------HHHHHHHHHH-HHHCCCCCCCCHHHHHHCCCCC-CC----CCCCC-CHHHCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf ------9999999986-5301566688415765015876-66----76784-1121001477889887606838987753
Q 000525 272 ------HLVQDCLKIS-KLHLDKSSRKDSAEVRQKKNID-IS----NSSGL-RWIKDVVLGKRNDDCFRMVVTGDPNIKL 338 (1443)
Q Consensus 272 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~~~-~~----~~~G~-r~~R~~l~GKRv~~s~RsVI~pdp~l~~ 338 (1443)
......+|.. ....|+.....+. .+..++. .+ .+.|+ .|||+|||||||||||||||+|||+|++
T Consensus 302 ap~~ii~~~~~~LQ~~V~~l~Dn~~~g~~~--~~~~~rp~lksl~~~LkGK~GrfR~NLmGKRVdfSaRSVI~pdP~L~i 379 (1265)
T 1hqm_D 302 APEIIIRNEKRMLQEAVDAVIDNGRRGSPV--TNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKL 379 (1265)
T ss_dssp CCSTTTSTTTTTTGGGTTTTSSCCSSCCCS--SCSSCCCCCCCSTTTSSSTTCTTTTTTSCCEETTCCCCBEEECCSSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf 945678888999999999996778779876--587888666425440246113455420210027666316716987665
Q ss_pred CCCCCCHHHHHHCCCCEEECHHHHHHHHHHHCCCCCCCCC-CEEEECCEEEEECCC-CCCCCCCEEECEECCCCEEEEEC
Q ss_conf 3100568878642730310302389866531024233686-147508917781022-33457777852000473699808
Q 000525 339 KEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE-LYVCRKGGLVRIRRI-DALELGDIIYRPLTDGDIVLINR 416 (1443)
Q Consensus 339 ~evgiP~~~a~~lt~pe~V~~~Ni~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~g~~v~R~l~dgd~vl~NR 416 (1443)
+|||||..||++||+| ||+.+|.. +|. ..++...+++. +.. ..+. +|.|+||++|||+|||||
T Consensus 380 ~evGvP~~~A~~L~~P-----~~~~~lv~--------~g~~~~i~~ak~~i~-~~~~~~~~-~~~v~~~v~~gd~VLlNR 444 (1265)
T 1hqm_D 380 HQCGLPKRMALELFKP-----FLLKKMEE--------KAFAPNVKAARRMLE-RQRDIKDE-VWDALEEVIHGKVVLLNR 444 (1265)
T ss_dssp SBCCCBHHHHHHHHHH-----HHHHHHHH--------TTCSSCSHHHHHHHC-SSSCCCHH-HHTTTTTTTTTCCEECCC
T ss_pred CCCCCHHHHHHHHCCH-----HHHHHHHH--------CCCCCHHHHHHHHHH-HCCCCCCC-CCEEEEEECCCCEEEEEC
T ss_conf 5036759999883758-----99999998--------398320466666544-01234776-422578730496789816
Q ss_pred CCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99888455421007990599658845667899989888881453027984389999997174688545899996211331
Q 000525 417 PPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496 (1443)
Q Consensus 417 qPsLHk~sima~~v~v~~~~~t~r~n~~~c~pynADFDGDemn~h~Pqs~~a~aE~~~L~~~~~~~isp~~g~p~~~l~Q 496 (1443)
||||||||||||+|+++|+ +||||||+||+||||||||||||+|+|||++|||||.+||++++|++||++|+|+++++|
T Consensus 445 qPTLHr~sIma~~~~l~~~-ktirlhp~vC~~yNADFDGDeMnvHvPqs~eA~aEa~~Lm~~~~nilsP~~G~Pi~~~~Q 523 (1265)
T 1hqm_D 445 APTLHRLGIQAFQPVLVEG-QSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSR 523 (1265)
T ss_dssp SSCCSGGGSCEEBCCCBSS-SSEEECGGGHHHHCCCSSSCBCCCCCCCSTHHHHTTSSSSBSSSSSSSCSSSSCSSCCCT
T ss_pred CCCCCCCCCCCEEEEECCC-CEEEECHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEECCCCCCEEEEEEC
T ss_conf 8642314542116896589-748736432687677754305789647988999999998375104843889981476401
Q ss_pred HHHHHHHHHCCCC--------CCCCHHHHHHHHHHCCCCCCCCCEECCC-------------------------C-----
Q ss_conf 4877787641686--------4359999999996199965788131136-------------------------8-----
Q 000525 497 DSLTAAHLLMEDS--------VLLSHLQMQQLQMFCPHRFLSPDIFKIS-------------------------K----- 538 (1443)
Q Consensus 497 D~l~g~~lLT~~d--------~fl~~~~~~~l~~~~~~~lp~PaI~Kp~-------------------------~----- 538 (1443)
|+|+|+|+||.+| +|+++++++++++.... +.|+++|+. +
T Consensus 524 D~vlg~y~LT~~~~~~~~~~~~F~~~~e~~~~~~~~~i--~l~a~i~~~~~~~~~g~~k~~~t~P~k~I~~~~~g~~~~q 601 (1265)
T 1hqm_D 524 DIILGLYYITQVRKEKKGAGMAFATPEEALAAYERGEV--ALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGLLDLQ 601 (1265)
T ss_dssp THHHHHHHTTCCCCCCCCCCCCSSCCTHHHHHTTSSCC--SSCCCSSSCCSTTSSCCCCCTTTCSHHHHHHHHTTSSCSS
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23320588312167766777501889999999977998--9898359706643444344445652221232346761333
Q ss_pred -----------CCCCHHHHHHHHCCCCCCCC-CCCCCCEEEECCEECCCCCCCCCCCCCCCHHHHHHHHHCHH-HHHHHH
Q ss_conf -----------85430788885139999831-13897289927900035576532478765999999982199-999999
Q 000525 539 -----------DSVWSGKQLFSMLLPPDFEY-TFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDK-VLDFLY 605 (1443)
Q Consensus 539 -----------~~lwTGKQifs~~lp~~~~~-~~~~~~v~i~nGell~~~~k~~lg~~~~~li~~l~~~~G~~-a~~fl~ 605 (1443)
..+|||||+||+++|++++. ..|+ ++.+.||. ++|+.+| +|+|.++++||.+ |+.|||
T Consensus 602 ~~~~~~~k~~~~~t~~Gr~if~~~lp~~~~~~~~p~-~~~~~ngv----ldKk~lG----~LI~~i~~~~G~~~a~~~ld 672 (1265)
T 1hqm_D 602 DTVTTRYLGRRLETNPGRILFARIVGEAVGDEKVAQ-ELIQMDVP----QEKNSLK----DLVYQAFLRLGMEKTARLLD 672 (1265)
T ss_dssp SCCCCEESSSEECCCHHHHHHHHHHHHHTTCTTTTT-TSSCCSSC----CCSSHHH----HHHHHHHHHSCHHHHHHHHH
T ss_pred CCCCEECCCCCEECCCCCEEEEEECCCCCCCCCCCC-CCCEEEEE----ECHHHHH----HHHHHHHHHHCHHHHHHHHH
T ss_conf 232010244533406885677620354323457988-78668305----4289999----99999999979999999999
Q ss_pred HHHHHHHHHHHCCC-CEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 99999999973256-40002865446542028999999995299998631023567776775520047765533411001
Q 000525 606 AAQEVLCEWLSVRG-MTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEH 684 (1443)
Q Consensus 606 ~~q~l~~~~L~~~G-FSigi~D~~~~~~~~~~k~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1443)
.+++++++|++.+| ||||++|+.++++ ++++++ +|++.++ + ....|..+... .
T Consensus 673 ~l~~l~~~~lt~~G~fSigi~D~~~~~~---k~~~i~-------~a~~~v~--~----i~~~y~~g~lt----------~ 726 (1265)
T 1hqm_D 673 ALKYYGFTLSTTSGIITIGIDDAVIPEE---KQRYLE-------EADRKLR--Q----IEQAYEMGFLT----------D 726 (1265)
T ss_dssp HHHHHHHHHHHHTTCCCCSSSSCCCCST---TTTHHH-------HHHHHHH--H----HHTTTTSSSSC----------H
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHH---HHHHHH-------HHHHHHH--H----HHHHHHCCCCC----------H
T ss_conf 9999999999857882585310347878---999999-------9999999--9----99999829986----------7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCEEEECCCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCC
Q ss_conf 11798887998899999898988999999986089---99952000003786550227674512221013-799865668
Q 000525 685 LSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGS---KDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHS-LAPLSFRFP 760 (1443)
Q Consensus 685 ~~~E~~~~~~L~~~~~~~~~~~~~~i~~~~~~~~~---~~N~l~~Mv~sGSKGS~~Nl~Q~~~~lGqQ~~-~g~~~~r~p 760 (1443)
..+++++ ++.|.+..+++++.+++++. ++|++++|+.||||||++|++||+||+|||.. .|+ .+
T Consensus 727 ~e~~~~v--------~~~~~~~~d~~~~~~~~~l~~~~~~N~i~~Ma~SGAKGS~~ni~Ql~g~~G~ma~~~G~---~i- 794 (1265)
T 1hqm_D 727 RERYDQV--------IQLWTETTEKVTQAVFNNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGE---TF- 794 (1265)
T ss_dssp HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHSCSSSCTTTTTTTSSSCCHHHHHHHSSCCCCCCCTTSC---CC-
T ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC---CC-
T ss_conf 8999999--------99999999999999998744158988699997716776898999998604640268997---46-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHEEEE
Q ss_conf 6542000024889998423589544441023333799835678740358875212334--79885018999987403763
Q 000525 761 HELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA--DLPGTLTRRLMFFMRDLCTA 838 (1443)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~GfV~~sf~~GL~p~EfffH~magReGlidta~--a~sGYLqRrLik~LeDl~v~ 838 (1443)
.+||.|||++||+|+|||||||||||||+|||+ |+||||||||||++||++|.
T Consensus 795 -------------------------~~pI~ssF~eGLtp~EyFfhtmggReGLiDTAvKTA~SGYLqRRLVkv~qDv~V~ 849 (1265)
T 1hqm_D 795 -------------------------EVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVR 849 (1265)
T ss_dssp -------------------------SCCCCCCBTTBCTTCTHHHHHHHHTTHHHHHTHHHHTSSSTHHHHHHHSCSCCCC
T ss_pred -------------------------CCCCCCCCCCCCCHHHHHEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCEEEEE
T ss_conf -------------------------8621252335898578530131123650332200166885113445340517999
Q ss_pred ECCEEECCCCC--------E------------------------------------------------------------
Q ss_conf 35648704776--------1------------------------------------------------------------
Q 000525 839 YDGTVRNAYGN--------Q------------------------------------------------------------ 850 (1443)
Q Consensus 839 YDgTVRns~G~--------~------------------------------------------------------------ 850 (1443)
||++.-. +|- .
T Consensus 850 ~ddc~t~-dGi~v~~~~~~~~i~~~~~~~~~~L~~ri~gr~~~~~i~~~~~~p~~~~~i~~~~~~i~~~~i~~~gi~~v~ 928 (1265)
T 1hqm_D 850 EADCGTT-KYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEALGRRLEEGRYLSLEDVHFLIKAAEAGEVREVP 928 (1265)
T ss_dssp SCCCCCC-CCEECCSEECCSTTCCCEECCTTTTHHHHTTCEESSCEEETTEEECSSCBCCTTHHHHHHHHHHTTSCSSCE
T ss_pred ECCCCCC-CCEEEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 7898997-998989851683440033201368999997665220331014698876578568504069999975998787
Q ss_pred ------------EEEEEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCC---CCCCCC----CCCCCCCCCHHHHCCC
Q ss_conf ------------788873157999999655880001455234148988200---465420----0345433311221049
Q 000525 851 ------------IVQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSAL---DQPISL----LETSPLLNLKNVLECG 911 (1443)
Q Consensus 851 ------------Iiq~~yg~~g~~~~~~~~~Ge~VG~~aAqSigEp~tq~l---~~~~~~----l~~~gl~rLkEil~~~ 911 (1443)
+++.+||.+= .....+.|||+||++||||||||+|||| +|..++ ..|.|+||++|+++++
T Consensus 929 iRs~ltc~s~~gvc~~CYgr~L-a~~~lV~~GEaVGiIAAQSIGEPGTQlTLrTFH~gGvas~~dIT~GLPRv~El~eAr 1007 (1265)
T 1hqm_D 929 VRSPLTCQTRYGVCQKCYGYDL-SMARPVSIGEAVGVVAAESIGEPGTQLTMRTFHTGGVAVGTDITQGLPRVIELFEAR 1007 (1265)
T ss_dssp EECGGGCSCTTSCCSSSSCSCS-SSSSCCCTTCCHHHHHHHHHHGGGTTSCCCC--------CCTTSSHHHHHHHHHHCC
T ss_pred EECCCCHHHHHHHHHHHHHHHH-CCCCEECCCCEEEEEECCCCCCCCCEEEEEEEEECCEECCCCCCCCCHHHHHHHHHC
T ss_conf 6367678779999999854121-059870168614554011227887425667788854400023345743289887510
Q ss_pred CCCCCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHCC
Q ss_conf 98777764762101110001234711438899850110026200112799981899865566860799982098899809
Q 000525 912 SKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTG 991 (1443)
Q Consensus 912 ~~~k~~~~~~~l~Ls~~~~k~~~~~e~~a~~Vk~~Le~itL~di~~~i~i~y~p~~~~~~~~sp~v~~i~Ldke~l~~~~ 991 (1443)
+ .+ ++.++..++... + +++ .. + .+.
T Consensus 1008 k-pk--~p~i~a~~~g~v------------------~---~~~-----------~~--------~------------~~~ 1032 (1265)
T 1hqm_D 1008 R-PK--AKAVISEIDGVV------------------R---IEE-----------GE--------D------------RLS 1032 (1265)
T ss_dssp C-CS--SCBCCCSSSCBC------------------C---CCC-----------CS--------S------------CCC
T ss_pred C-CC--CCEEEEECCCEE------------------E---EEE-----------CC--------C------------CCE
T ss_conf 7-89--862798416549------------------9---830-----------48--------8------------517
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCE
Q ss_conf 99899999999844666642103689504523765652211357993499999513554432429999998602233625
Q 000525 992 LKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTV 1071 (1443)
Q Consensus 992 L~i~~i~~~i~~~~~~~~~~lk~~~~~i~i~~~~c~~~~~~~~~~~~~~i~v~~~~~~~~~~~~l~~l~~~iip~ll~~v 1071 (1443)
+.+... +.. .+ . .
T Consensus 1033 ---------------------------i~i~~~-----------g~~-------~~---~-----------~-------- 1045 (1265)
T 1hqm_D 1033 ---------------------------VFVESE-----------GFS-------KE---Y-----------K-------- 1045 (1265)
T ss_dssp ---------------------------CCCBCS-----------SCC-------CC---C-----------C--------
T ss_pred ---------------------------EEEEEC-----------CCE-------EE---E-----------E--------
T ss_conf ---------------------------999878-----------927-------79---9-----------7--------
Q ss_pred EECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCH
Q ss_conf 52125611899851342234678899975199999321554440147788541003444101334577839999998809
Q 000525 1072 VKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGI 1151 (1443)
Q Consensus 1072 vkG~~~I~rv~I~~~~~~~~~~~~~~~~~el~l~~~~s~~~~~~~~~~~ll~~~~~~~~~id~~rt~~n~I~ei~~~lGI 1151 (1443)
+|...++.+...| + -..+++. +++ ++|++||.+++||
T Consensus 1046 ---ip~~~~l~v~~g~--~------v~~g~~l-------------------------teG-------~~~~~eil~v~Gi 1082 (1265)
T 1hqm_D 1046 ---LPKDARLLVKDGD--Y------VEAGQPL-------------------------TRG-------AIDPHQLLEAKGP 1082 (1265)
T ss_dssp ---CSSCCCCCCCSCC--S------STTCSCC-------------------------CCS-------BSHHHHHHHTTHH
T ss_pred ---CCCCEEEEEECCC--E------EECCCEE-------------------------ECC-------CCCHHHHHHHHHH
T ss_conf ---4785289984697--7------7068035-------------------------226-------7519999998639
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCE----------------------------------------EEE
Q ss_conf 9999999999999731169744888999988310321----------------------------------------238
Q 000525 1152 DAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT----------------------------------------GEF 1191 (1443)
Q Consensus 1152 EAAr~~ii~ei~~~~~~~G~~V~~rHl~LlAd~MT~~----------------------------------------G~~ 1191 (1443)
||+|.+|++|+++|+..||++|+.||+++|+|.||.+ +.+
T Consensus 1083 ea~~~~lv~EIq~vyr~QGv~I~dkHievivrqM~~kv~i~~~g~t~~l~Ge~v~~~~~~~~n~~~~~~g~~~~~~~~~l 1162 (1265)
T 1hqm_D 1083 EAVERYLVDEIQKVYRAQGVKLHDKHIEIVVRQMLKYVEVTDPGDSPLLEGQVLEKWDVEALNERLIAEGKVPVAWKPLL 1162 (1265)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCSSTHHHHHHHHTTEECBSSCCSSCCSCCCEEGGGTTTTTTTTTTC---CCCCBCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999999999999897486203789999999874253771488867889866509999999999996689852554556
Q ss_pred EECCHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 51265545533014787650011223362799999996089757889200000489987657520
Q 000525 1192 VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGH 1256 (1443)
Q Consensus 1192 ~gi~r~G~~~~~~~~~~~Spl~~asFe~t~~~l~~AA~~g~~D~l~gvs~~ii~G~~~~~GTgg~ 1256 (1443)
+||||.+++ +.|+|+.||||+|+++|.+||.+|++|+|.|++||+|+|+++|+|| |.
T Consensus 1163 lGITkasl~-------t~SflsaASFqeTt~vL~~AAi~gk~D~L~GlkEnVIiG~lipaGT-G~ 1219 (1265)
T 1hqm_D 1163 MGVTKSALS-------TKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGT-GS 1219 (1265)
T ss_dssp CCTHHHHTS-------CSCHHHHTTSTTHHHHHHHHHHSCCCCTTCSSHHHHHHTCCCSSGG-GC
T ss_pred ECCEECCCC-------CCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCCCCCC-CC
T ss_conf 520522334-------6774430556888999999997289876899277633178656875-81
No 5
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=1.00 E-value=1 Score=1396.87 Aligned_cols=797 Identities=19% Similarity=0.215 Sum_probs=563.0
Q ss_pred CCHHHHHHHHCCCCHHHH--------------------------HHC---CCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 299999998313893457--------------------------310---479884144215568998986444565556
Q 000525 194 LSCKQVSYLLKDVDPSIR--------------------------EEF---ILSKDAPFLKCFPVTPNNHRVTEVPHAFSH 244 (1443)
Q Consensus 194 LsP~~V~~iLk~I~~e~~--------------------------~~~---~~rpE~liLt~LPVPPn~iRPs~~~~~~~n 244 (1443)
.-++-++++|++++-+.. +.| ..+||||||++|||||+++||++..++
T Consensus 456 ~Gaeai~~lL~~~dl~~~~~~l~~~~~~~~~~~~~~~~krl~~~~~F~~~~~rPewmil~vlPVpPp~lRP~v~ldg--- 532 (1524)
T 2a6h_D 456 MGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDG--- 532 (1524)
T ss_dssp CSHHHHHHHHHHCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHSSCCTTTTEEEEEEECCSTTSCEEECST---
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCC---
T ss_conf 58999999998579999999999999850366677754548999998644887537888326689997788666189---
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHH---------HHHHHHHHHHH-HHCCCCCCCCHHHHHHCCCCC-CC----CCCC
Q ss_conf 642333344799999998509807889---------99999999865-301566688415765015876-66----7678
Q 000525 245 EKKLFFDNWTRHLKKMVDYRGRDIELS---------HLVQDCLKISK-LHLDKSSRKDSAEVRQKKNID-IS----NSSG 309 (1443)
Q Consensus 245 g~~~~eDdlT~~l~~Iv~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~-~~----~~~G 309 (1443)
.++.+||+|.+|++|++.|...+.+. ......+|... ...||.....+. .+..|+. .+ .+.|
T Consensus 533 -g~~~~sDLn~ly~~II~~Nn~Lk~~~~~gap~~ii~~e~~~LQ~~V~~liDN~~~g~p~--~~~~~Rp~lKslsq~LkG 609 (1524)
T 2a6h_D 533 -GRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPV--TNPGSDRPLRSLTDILSG 609 (1524)
T ss_dssp -TCEEECTHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCSSSSSCCB--CSSSCCCBCCCHHHHHST
T ss_pred -CCEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHCCC
T ss_conf -82666627899999999989999998732507789999999999999996578878876--688888767644443035
Q ss_pred C-CHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHHHHCCCCCCCCC-CEEEECCEE
Q ss_conf 4-11210014778898876068389877533100568878642730310302389866531024233686-147508917
Q 000525 310 L-RWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGE-LYVCRKGGL 387 (1443)
Q Consensus 310 ~-r~~R~~l~GKRv~~s~RsVI~pdp~l~~~evgiP~~~a~~lt~pe~V~~~Ni~~L~~~~~~~~~~~~~-~~~~~~~~~ 387 (1443)
+ .+||+|||||||||||||||+|||+|+++|||||..||.+||+|+ ++.+|.. +|. ..++...++
T Consensus 610 KeGRFRqNLlGKRVDySgRSVI~pdP~L~l~evGvP~~mA~eLt~Pf-----~~r~Lv~--------nG~a~nik~AK~l 676 (1524)
T 2a6h_D 610 KQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPF-----LLKKMEE--------KGIAPNVKAARRM 676 (1524)
T ss_dssp TTCHHHHHHHCEEESSEEEEEEEECTTSCTTEEEEEHHHHHHHTHHH-----HHHHHHH--------STTCSSHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHCCHH-----HHHHHHH--------CCCCCCHHHHHHH
T ss_conf 45410004443113666752472698750551378099999856599-----9999998--------3983422666678
Q ss_pred EEECC-CCCCCCCCEEECEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCH
Q ss_conf 78102-23345777785200047369980899888455421007990599658845667899989888881453027984
Q 000525 388 VRIRR-IDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAI 466 (1443)
Q Consensus 388 ~~~~~-~~~l~~g~~v~R~l~dgd~vl~NRqPsLHk~sima~~v~v~~~~~t~r~n~~~c~pynADFDGDemn~h~Pqs~ 466 (1443)
+. +. ...+. +|.|+||++|||+|||||||||||+|||||+|+++++ +||||||+||+||||||||||||+|+|||+
T Consensus 677 i~-~~~~~~~~-v~dVlr~vidgd~VLlNRqPTLHRlSIqAf~~kl~~g-kTiRLhplVC~pyNADFDGDEMnvHvPqS~ 753 (1524)
T 2a6h_D 677 LE-RQRDIKDE-VWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEG-QSIQLHPLVCEAFNADFDGDQMAVHVPLSS 753 (1524)
T ss_dssp HS-SGGGCCHH-HHHHHHHHSTTCCEEEECSSCCSGGGEEEEEEEEESS-SCEEECSGGGTTTTCCTTTCEEEEECCCSH
T ss_pred HH-HHCCCCCC-CHHHHEEECCCCEEEECCCCCCCCCCCCEEEEEECCC-CCCEECHHHCCCCCCCCCCCEEEEECCCCH
T ss_conf 76-41134653-0122010005966787058743425640268897578-510147232577667756533567627878
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------CCCCCHHHHHHHHHH------CCCC-----
Q ss_conf 389999997174688545899996211331487778764168--------643599999999961------9996-----
Q 000525 467 GARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMED--------SVLLSHLQMQQLQMF------CPHR----- 527 (1443)
Q Consensus 467 ~a~aE~~~L~~~~~~~isp~~g~p~~~l~QD~l~g~~lLT~~--------d~fl~~~~~~~l~~~------~~~~----- 527 (1443)
+|||||.+||++++|++||++|+|+++++||+|+|+|+||.+ ++|+++++++++.+. +...
T Consensus 754 eAraEA~~LM~~~~nilsP~~G~Pi~~~~QD~vlG~y~LT~~~~~~~~~g~~F~~~~e~~~ay~~~~~~l~~~i~v~~~~ 833 (1524)
T 2a6h_D 754 FAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRE 833 (1524)
T ss_dssp HHHHHHHHHSBTTTCCBCSSSSSBSSCCCHHHHHHHHHHHCCCCCCCCSCCCTTSCHHHHHHHHHHHHTTSSCSSCCCSS
T ss_pred HHHHHHHHHHCCCCCEECCCCCCEEEEECCCCHHHHEECCCCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCCEEEECCC
T ss_conf 89999999847714461389998146213300232033412465666778655889999999865886768725984243
Q ss_pred ---------CCCC--CEECC-CC----------------CCCCHHHHHHHHCCCCCCCCC-CCCCCEEEECCEECCCCCC
Q ss_conf ---------5788--13113-68----------------854307888851399998311-3897289927900035576
Q 000525 528 ---------FLSP--DIFKI-SK----------------DSVWSGKQLFSMLLPPDFEYT-FPSKDVYISGGKLISAEGS 578 (1443)
Q Consensus 528 ---------lp~P--aI~Kp-~~----------------~~lwTGKQifs~~lp~~~~~~-~~~~~v~i~nGell~~~~k 578 (1443)
+|+| ||+|| .+ ...|+||++|+.++|..++.. .|+ ++.+.|| .++|
T Consensus 834 ~~~~~~~~~~p~P~~aIlKpwtGKQi~~~~~~~~I~~~~~~tt~Gr~ifn~~lp~~l~~~~~P~-d~~~inG----vLdK 908 (1524)
T 2a6h_D 834 TSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAW-ELIQLDV----PQEK 908 (1524)
T ss_dssp CCHHHHHCEESSHHHHHHHHHTTSSCTTSCCEEECSSCEECCCHHHHHHHHHHHHHSSCHHHHH-HTCCTTS----CCCH
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEECCEEECCCCHHHHHHHHHHHCCCCCCCC-CCCCEEC----EECH
T ss_conf 4443323446785564158988741465432111000102216654319988566504566898-6662203----3638
Q ss_pred CCCCCCCCCHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 532478765999999982199-9999999999999997325640002865446542028999999995299998631023
Q 000525 579 SWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQ 657 (1443)
Q Consensus 579 ~~lg~~~~~li~~l~~~~G~~-a~~fl~~~q~l~~~~L~~~GFSigi~D~~~~~~~~~~k~~~~~i~~~~~~a~~~~~~~ 657 (1443)
+++| +|+|.++++||.+ |+.|||.+++++++|++++|||||++|+.++++ ++++++ +|++.++
T Consensus 909 k~LG----~LI~~i~~~yG~~~t~~fLD~lk~Lg~~~lt~~GfSIGI~Dlii~~~---K~eiI~-------eA~~~v~-- 972 (1524)
T 2a6h_D 909 NSLK----DLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEE---KKQYLE-------EADRKLL-- 972 (1524)
T ss_dssp HHHH----HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCCSTTSCCCTT---HHHHHH-------HHHHHHH--
T ss_pred HHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHCCCCHH---HHHHHH-------HHHHHHH--
T ss_conf 9999----99999999859999999999999999999986681420533257777---999999-------9999999--
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCEEEECCCCCC
Q ss_conf 56777677552004776553341100111798887998899999898988999999986089---999520000037865
Q 000525 658 QLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGS---KDNSLLAMFKAGSKG 734 (1443)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~L~~~~~~~~~~~~~~i~~~~~~~~~---~~N~l~~Mv~sGSKG 734 (1443)
+ ....|..+.... ...++++ ++.|+++.+++++.+++.+. +.|++++|+.|||||
T Consensus 973 ~----i~~~y~~G~lt~----------~Er~~~V--------i~iw~~a~d~v~~~~~~~L~~~~~~N~i~~Ma~SGAKG 1030 (1524)
T 2a6h_D 973 Q----IEQAYEMGFLTD----------RERYDQI--------LQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARG 1030 (1524)
T ss_dssp H----HHHHHHTTCSCH----------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHSSSSC
T ss_pred H----HHHHHHCCCCCH----------HHHHHHH--------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
T ss_conf 9----999998399977----------9999999--------99999999999999997404158988799998716775
Q ss_pred CHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 5022767451222101-379986566865420000248899984235895444410233337998356787403588752
Q 000525 735 NLLKLVQHSLCLGLQH-SLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSS 813 (1443)
Q Consensus 735 S~~Nl~Q~~~~lGqQ~-~~g~~~~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~GfV~~sf~~GL~p~EfffH~magReGl 813 (1443)
|++|++||+||+|||. ..|+ ++| -+|.|||++||+|+|||||||||||||
T Consensus 1031 S~~NI~Ql~gmrGqma~p~Gk---iIp--------------------------~PI~ssF~eGLtp~EyFfhtmGgReGL 1081 (1524)
T 2a6h_D 1031 NPQQIRQLCGLRGLMQKPSGE---TFE--------------------------VPVRSSFREGLTVLEYFISSHGARKGG 1081 (1524)
T ss_dssp CHHHHHHHTSCCCCCBCSSSC---BCS--------------------------SCCCCCSSSCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCCCCCC---CCC--------------------------CCCCCCCCCCCCHHHHHEECCCCCCCC
T ss_conf 798999998603660468997---722--------------------------511343246997477420122235775
Q ss_pred CCCCC--CCCCCCHHHHHHHHHHEEEEECCEEECCCCCEEEEE-------------------------------------
Q ss_conf 12334--798850189999874037633564870477617888-------------------------------------
Q 000525 814 FSDNA--DLPGTLTRRLMFFMRDLCTAYDGTVRNAYGNQIVQF------------------------------------- 854 (1443)
Q Consensus 814 idta~--a~sGYLqRrLik~LeDl~v~YDgTVRns~G~~Iiq~------------------------------------- 854 (1443)
+|||+ |+||||||||||++||++|.||++.- .+|-.+...
T Consensus 1082 vDTAvKTAdSGYLqRRLVkv~qDviVr~dDcgt-~dGi~v~~~~~g~~~~~~~~~~i~~l~~ri~gR~~~~di~~~~~~p 1160 (1524)
T 2a6h_D 1082 ADTALRTADSGYLTRKLVDVTHEIVVREADCGT-TNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRL 1160 (1524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCBCCSCCCC-CCCEEEESBCSCSSSSCCCBCCHHHHHHHHTTCBBSSCEECSSCEE
T ss_pred CCCCEEECCCCCCEEEEEEECCEEEEEECCCCC-CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 332011056884034221100606999678899-7986888863078666520688898998774331134455412588
Q ss_pred -------------------------------------------EECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCC--
Q ss_conf -------------------------------------------73157999999655880001455234148988200--
Q 000525 855 -------------------------------------------SYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSAL-- 889 (1443)
Q Consensus 855 -------------------------------------------~yg~~g~~~~~~~~~Ge~VG~~aAqSigEp~tq~l-- 889 (1443)
+||.+- .....+.+||+||++||||||||+|||+
T Consensus 1161 ~~~e~i~~~~~~I~~~~i~~~gi~~v~iRS~ltC~s~~gvc~~CYgr~L-a~~~~v~~GeaVGiiaAQSIGEPgTQlTlr 1239 (1524)
T 2a6h_D 1161 EEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDL-SMARPVSIGEAVGIVAAQSIGEPGTQLTMR 1239 (1524)
T ss_dssp CTTCBCCTTTTTHHHHHHHHTSCSEEEECCGGGCCCSSCBCHHHHCSCS-SSSSSCCTTCCHHHHHHHHHHSGGGTCCCC
T ss_pred CCCCEEECCCCEEHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCEEEHHHHCCCCCCCCCCCE
T ss_conf 7676786799865189999719983244365558889999999845331-039740344101021332037875432100
Q ss_pred -CCCCCC----CCCCCCCCCHHHHCCCCCCCCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHCEEEEEEC
Q ss_conf -465420----034543331122104998777764762101110001234711438899850110026200112799981
Q 000525 890 -DQPISL----LETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYS 964 (1443)
Q Consensus 890 -~~~~~~----l~~~gl~rLkEil~~~~~~k~~~~~~~l~Ls~~~~k~~~~~e~~a~~Vk~~Le~itL~di~~~i~i~y~ 964 (1443)
+|..+. ..+.|+||++|+++|++...+ .++ + ++...+.+..
T Consensus 1240 TFH~gGv~~~~dIt~GlPRv~El~eARkpk~~---aiI---~---------------------------ei~G~V~i~~- 1285 (1524)
T 2a6h_D 1240 TFHTGGVAGAADITQGLPRVIELFEARRPKAK---AVI---S---------------------------EIDGVVRIEE- 1285 (1524)
T ss_dssp -----------CCCCSHHHHHHHHTTCCCSSB---CCB---C---------------------------SSCEEEEECC-
T ss_pred EEEECCCCCCCCCCCCCCCHHHHEECCCCCCC---CEE---E---------------------------EECEEEEEEE-
T ss_conf 04533523433323467224554001247886---269---9---------------------------8310899953-
Q ss_pred CCCCCCCCCCCEEEEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 89986556686079998209889980999899999999844666642103689504523765652211357993499999
Q 000525 965 PQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVM 1044 (1443)
Q Consensus 965 p~~~~~~~~sp~v~~i~Ldke~l~~~~L~i~~i~~~i~~~~~~~~~~lk~~~~~i~i~~~~c~~~~~~~~~~~~~~i~v~ 1044 (1443)
.. ..-.+.+.
T Consensus 1286 -~~---------------------------------------------------------------------~~r~i~i~ 1295 (1524)
T 2a6h_D 1286 -TE---------------------------------------------------------------------EKLSVFVE 1295 (1524)
T ss_dssp -CS---------------------------------------------------------------------SCEEEEEE
T ss_pred -CC---------------------------------------------------------------------CCEEEEEE
T ss_conf -17---------------------------------------------------------------------83289997
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 51355443242999999860223362552125611899851342234678899975199999321554440147788541
Q 000525 1045 IVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMND 1124 (1443)
Q Consensus 1045 ~~~~~~~~~~~l~~l~~~iip~ll~~vvkG~~~I~rv~I~~~~~~~~~~~~~~~~~el~l~~~~s~~~~~~~~~~~ll~~ 1124 (1443)
+.. +. ....+|..+++.+. +++.+ + . +. .
T Consensus 1296 ~~~---~~------------------~~~~ip~~~~l~V~--------------~gd~v-~---~-----g~---~---- 1324 (1524)
T 2a6h_D 1296 SEG---FS------------------KEYKLPKEARLLVK--------------DGDYV-E---A-----GQ---P---- 1324 (1524)
T ss_dssp CSS---CE------------------EEEEECTTCCCCCC--------------TTSEE-C---T-----TC---B----
T ss_pred CCC---CE------------------EEEECCCCEEEEEE--------------CCCEE-E---C-----CE---E----
T ss_conf 088---40------------------47864776078983--------------69756-4---3-----72---7----
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCE----------------
Q ss_conf 0034441013345778399999988099999999999999731169744888999988310321----------------
Q 000525 1125 CHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT---------------- 1188 (1443)
Q Consensus 1125 ~~~~~~~id~~rt~~n~I~ei~~~lGIEAAr~~ii~ei~~~~~~~G~~V~~rHl~LlAd~MT~~---------------- 1188 (1443)
+++| ++|++||.+++||||||.+|++|++.||..||++||.||++||||.||.+
T Consensus 1325 ---lteG-------~~~~~dil~v~Giea~~~~iv~Eiq~Vyr~QGv~I~dKHIevIvrqM~~kv~i~~~Gdt~~l~Ge~ 1394 (1524)
T 2a6h_D 1325 ---LTRG-------AIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQV 1394 (1524)
T ss_dssp ---SSSS-------BCCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTTSEEEEEECSSSCSSCEEE
T ss_pred ---EECC-------CCCCHHHEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCCCCE
T ss_conf ---7448-------787422101069999999999999999985585513568999999874425882488766789865
Q ss_pred ------------------------EEEEECCHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEC
Q ss_conf ------------------------23851265545533014787650011223362799999996089757889200000
Q 000525 1189 ------------------------GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALG 1244 (1443)
Q Consensus 1189 ------------------------G~~~gi~r~G~~~~~~~~~~~Spl~~asFe~t~~~l~~AA~~g~~D~l~gvs~~ii 1244 (1443)
+.++||||.+++ +.|+|+.||||+|+++|.+||.+|++|+|.|++||||
T Consensus 1395 v~~~~~~~~n~~~~~~g~~~a~~~~~llGITkasL~-------t~SfLsaASFqeTtrvLt~AAi~Gk~D~L~GlkENVI 1467 (1524)
T 2a6h_D 1395 LEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALS-------TKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVI 1467 (1524)
T ss_dssp HHHHHHHHHHHHTTSCSCCCCEEEECCCCHHHHHHS-------CSCHHHHHHSSCHHHHHHHHHHTTEEEECCSHHHHHH
T ss_pred EEHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCC-------CCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHEE
T ss_conf 419999999999997689852210035420531334-------6872331574888999999986389877898278711
Q ss_pred CCCCCCCCCCCCEEE
Q ss_conf 489987657520088
Q 000525 1245 WGKVPSVGTGGHFDI 1259 (1443)
Q Consensus 1245 ~G~~~~~GTgg~f~l 1259 (1443)
+|+++|+|| |.+++
T Consensus 1468 iG~lIPaGT-G~~~~ 1481 (1524)
T 2a6h_D 1468 LGRLIPAGT-GSDFV 1481 (1524)
T ss_dssp TTCCCSSST-TCTTT
T ss_pred ECCCCCCCC-CCHHH
T ss_conf 168756786-86101
No 6
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=1.00 E-value=1 Score=1375.09 Aligned_cols=1067 Identities=17% Similarity=0.212 Sum_probs=661.6
Q ss_pred CCCHHHCCCCCCCCEEEEEEEEECCCHHHHHHCCCEEEECC------------CCCCCCCC-CCCC--------------
Q ss_conf 98110103787783001058998389699974464087048------------98788999-9999--------------
Q 000525 1 MDNEFCEEGLEVPSGILTGISLGISTDTEKEKLSVMEIGAV------------SEVTNPRL-GLPN-------------- 53 (1443)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~~I~F~i~S~eEI~klSv~eIt~~------------~GL~DpRL-G~~~-------------- 53 (1443)
|.+-+.+-..+.....+..|++++.||++|+++|.-||+.| +||++.|. ||..
T Consensus 1 m~~~~~~~~~~~~~~~~~~i~i~laSpe~I~~ws~GEV~kpetinyrt~kPe~dGLFcerIFGp~kd~eC~Cgkyk~~~~ 80 (1407)
T 3lu0_D 1 MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKH 80 (1407)
T ss_dssp -------------CCCCCCEEECCCCHHHHHHHBCSCCCSCCCCCSSCCSCCSSSSSCTTTTCCSSSSCCSSCSCCSTTC
T ss_pred CHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 95687765275666765639999679899985368278780200267788778971242323877684796753135166
Q ss_pred CCCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCHHHH----HHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 99987889999998788---966114447322340228899----99972014332114673034301134644633643
Q 000525 54 PTNECSSCGAKDRKACE---GHFGFIKFPFTILHPYFLSDI----AKLLNSICPKCKTIRKERQKGAGSSRKEQPRVCKY 126 (1443)
Q Consensus 54 ~~~~C~TCg~~~~~~Cp---GHFGhIeL~~PVfHp~f~~~i----~~IL~~iC~~C~~lll~~~~k~l~~~~~~~~~C~~ 126 (1443)
++..|++||- ...+|. .|||||+|+.||.|++|++.+ ..+|.+.|+.|.+++.-...-.+.
T Consensus 81 ~g~~C~~Cgv-evt~~~vRr~rmGhI~La~PV~Hiwy~k~~ps~i~~lL~~~~k~le~viy~~~~iv~~----------- 148 (1407)
T 3lu0_D 81 RGVICEKCGV-EVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIE----------- 148 (1407)
T ss_dssp SSSCCSSSCC-CCCCTTHHHHCBCEEEEEEEECCTHHHHSSSCTTTTTTTSCSSTTHHHHSSSCCCEEC-----------
T ss_pred CCCCCCCCCC-CCCCCCCHHHHCCEEEECCCEEEEEECCCCCHHHHHHHCCCHHHHHHHEECCEEEEEC-----------
T ss_conf 8877788787-6565721132044341048616763136883699998399888864500211058656-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 54688888854311246644458432010032220013788865433445764311123468974112999999983138
Q 000525 127 CVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDV 206 (1443)
Q Consensus 127 C~~~~~~~~p~i~~~~s~~~~~~k~~ii~e~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LsP~~V~~iLk~I 206 (1443)
|... .+++..++.+- .+......... . ......++-++++|+++
T Consensus 149 ---------~~~~-------~l~~~~~~~~~--~~~~~~~~~~~---~---------------~~~~~Gaeai~~lL~~~ 192 (1407)
T 3lu0_D 149 ---------GGMT-------NLERQQILTEE--QYLDALEEFGD---E---------------FDAKMGAEAIQALLKSM 192 (1407)
T ss_dssp ---------CSSS-------CSCSSCCCCST--TCCCCCSSSCC---C---------------CCEECSSHHHHHHHHTC
T ss_pred ---------CCCC-------CCCHHCCCCHH--HHHHHHHHHCH---H---------------HHCCCCHHHHHHHHHHC
T ss_conf ---------8877-------52030346899--99999876132---3---------------30242589999999856
Q ss_pred CHH---------------------------HHHH---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 934---------------------------5731---0479884144215568998986444565556642333344799
Q 000525 207 DPS---------------------------IREE---FILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRH 256 (1443)
Q Consensus 207 ~~e---------------------------~~~~---~~~rpE~liLt~LPVPPn~iRPs~~~~~~~ng~~~~eDdlT~~ 256 (1443)
+-+ .++. ...+||||||++|||||+++||++..++ .++.+||+|.+
T Consensus 193 dl~~~~~~l~~~~~~~~~~~k~~~~~krl~~v~~F~~s~~rPewmil~~lPVpPp~lRP~v~l~g----g~~~~~DLn~l 268 (1407)
T 3lu0_D 193 DLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDG----GRFATSDLNDL 268 (1407)
T ss_dssp CHHHHHHTHHHHHHHCCCTTTTTTTTTSSTTHHHHHSSSCCGGGSSEEEEECCCSTTSCCCBCST----TCBCCCTTTTT
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHEEECCCCCCCCCEEECC----CCCCCCCHHHH
T ss_conf 77999999999998661078899998899999999856998898664256259987788279689----85456856789
Q ss_pred HHHHHHHHCCCHHH---------HHHHHHHHHHHH-HHCCCCCCCCHHHHHHCCCCCCC----CCCCC-CHHHCCCCCCC
Q ss_conf 99999850980788---------999999999865-30156668841576501587666----76784-11210014778
Q 000525 257 LKKMVDYRGRDIEL---------SHLVQDCLKISK-LHLDKSSRKDSAEVRQKKNIDIS----NSSGL-RWIKDVVLGKR 321 (1443)
Q Consensus 257 l~~Iv~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~~----~~~G~-r~~R~~l~GKR 321 (1443)
|..|+..|...+.+ .......+|... ...|+.....+. .+..++..+ .+.|+ .+||+||||||
T Consensus 269 y~~II~~N~~Lk~~~~~~ap~~ii~~~~~~LQ~~V~~l~Dn~~~g~~~--~~~~~rplksl~qrLkGKeGrfR~NLmGKR 346 (1407)
T 3lu0_D 269 YRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAI--TGSNKRPLKSLADMIKGKQGRFRQNLLGKR 346 (1407)
T ss_dssp HHHHHHTTTTTGGGTSSCCCTTTHHHHHHHHHHHHHHHHCSSSSCCCC--BTTBCCCCCCTTHHHHTSSSTHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCHHHHHCCCCCHHHCCCCCCC
T ss_conf 999999899999998749958899999999999888762778778765--477898564367774444301222446677
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCE
Q ss_conf 89887606838987753310056887864273031030238986653102423368614750891778102233457777
Q 000525 322 NDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEKGELYVCRKGGLVRIRRIDALELGDI 401 (1443)
Q Consensus 322 v~~s~RsVI~pdp~l~~~evgiP~~~a~~lt~pe~V~~~Ni~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 401 (1443)
|||||||||||||+|+++|||||..||++||+| ||+++|++.-....+.....++. ..... .|.
T Consensus 347 VDfSaRSVIspdP~L~i~evGvP~~~A~~L~~P-----f~i~~L~~~g~~~~i~~ak~~v~----------~~~~~-v~~ 410 (1407)
T 3lu0_D 347 VDYSGRSVITVGPYLRLHQCGLPKKMALELFKP-----FIYGKLELRGLATTIKAAKKMVE----------REEAV-VWD 410 (1407)
T ss_dssp CSSBCEEEEEECSSCCTTEEEEESHHHHHHTCH-----HHHHHHTTSSSCSSTTTTTTTTT----------SSCSS-HHH
T ss_pred CCCCCCEEEECCCCCCCEEEECCHHHHHHHCCH-----HHHHHHHHCCCCCCHHHHHHHHH----------HCCCC-HHH
T ss_conf 787671488379986320542789999874526-----77999987386023788999887----------51883-356
Q ss_pred EECEECCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCC
Q ss_conf 85200047369980899888455421007990599658845667899989888881453027984389999997174688
Q 000525 402 IYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQ 481 (1443)
Q Consensus 402 v~R~l~dgd~vl~NRqPsLHk~sima~~v~v~~~~~t~r~n~~~c~pynADFDGDemn~h~Pqs~~a~aE~~~L~~~~~~ 481 (1443)
|.||++|||+|||||||||||+|||||+++++++ +||||||+||+||||||||||||+|+|||++|||||.+||.+++|
T Consensus 411 vl~~vi~gd~VLlNRqPTLHr~sIma~~~~l~~~-ktirlnp~vC~~yNADFDGDeMnvHvPqs~eAraEa~~Lm~~~~n 489 (1407)
T 3lu0_D 411 ILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEG-KAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNN 489 (1407)
T ss_dssp HHHTTTTSCCEEEEESSCCSGGGEEEEEEEEESS-SSEEECTGGGGTTTCCSSSCEEEEECCCSSHHHHTTTTSSBTTTC
T ss_pred HHHHHHHCEEEEECCCCCCCCCCCEEEEEEECCC-CEEEECHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 8998753425665488631224432446786489-658867656443457734423554237899999999999717023
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCC--------CCCHHHHHHHHHHCCC------CCCCCC-----------EECC
Q ss_conf 54589999621133148777876416864--------3599999999961999------657881-----------3113
Q 000525 482 LINQQSGRNLLSLGQDSLTAAHLLMEDSV--------LLSHLQMQQLQMFCPH------RFLSPD-----------IFKI 536 (1443)
Q Consensus 482 ~isp~~g~p~~~l~QD~l~g~~lLT~~d~--------fl~~~~~~~l~~~~~~------~lp~Pa-----------I~Kp 536 (1443)
++||++|+|+++++||+++|+|+||.++. |.+.+++++++..... .+..|. ..|+
T Consensus 490 ilsP~~G~Pi~~~~QD~llG~y~lT~~~~~~~~~~~~F~~~~ev~~al~~g~v~l~a~i~vr~~~~~~~~~g~~~~~~~~ 569 (1407)
T 3lu0_D 490 ILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSL 569 (1407)
T ss_dssp CSCSSSSSCSSCCCSHHHHHHHHHSCCCCCSCCSCCCCSSCSHHHHHHHHSSSSSSSCSSSSCCCCSCSHHHHHHHTTTS
T ss_pred CCCCCCCCCEEEECCCCHHEEEEEECCCCCCCCCCCEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 23488998225001300111577522465666776223889999999975998889725886576554767752455235
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCEECC-CCCCCCCCCCCCCHHHHHHHHHCHH-HHHHHHHHHHHHHHH
Q ss_conf 68854307888851399998311389728992790003-5576532478765999999982199-999999999999999
Q 000525 537 SKDSVWSGKQLFSMLLPPDFEYTFPSKDVYISGGKLIS-AEGSSWLRDYEGNLFQYLIKRYRDK-VLDFLYAAQEVLCEW 614 (1443)
Q Consensus 537 ~~~~lwTGKQifs~~lp~~~~~~~~~~~v~i~nGell~-~~~k~~lg~~~~~li~~l~~~~G~~-a~~fl~~~q~l~~~~ 614 (1443)
.++|||||+||++||++++|. ++. .++|+.+| +|++.++++||.+ ++.|||.+++++++|
T Consensus 570 --~~tt~Gr~ifs~ilP~~~~~~------------~ing~l~KK~lg----~LI~~i~~~~G~~~t~~flD~lk~Lgf~~ 631 (1407)
T 3lu0_D 570 --KDTTVGRAILWMIVPKGLPYS------------IVNQALGKKAIS----KMLNTCYRILGLKPTVIFADQIMYTGFAY 631 (1407)
T ss_dssp --CCSSSHHHHHHHHGGGSSCCT------------TTTTCCSSSTTT----THHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred --EECCCCCCCHHHHCCCCCCCE------------EEECCCCHHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf --655875003775498999805------------663644511499----99999999859999999999999999999
Q ss_pred HHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73256400028654465420289999999952999986310235677767755200477655334110011179888799
Q 000525 615 LSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTRSLQGEHLSYEKQRSAA 694 (1443)
Q Consensus 615 L~~~GFSigi~D~~~~~~~~~~k~~~~~i~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~ 694 (1443)
++.+|||||++|+.++++ +.+++ .+|++.++ + ....|..|.++.+ ..++++..
T Consensus 632 at~~GfSIgI~D~~ip~~---K~~iI-------~~A~~eV~--e----i~~~y~~G~lt~~----------er~~kVi~- 684 (1407)
T 3lu0_D 632 AARSGASVGIDDMVIPEK---KHEII-------SEAEAEVA--E----IQEQFQSGLVTAG----------ERYNKVID- 684 (1407)
T ss_dssp HHHHTCCCCSTTSCCCTT---HHHHH-------HHHHTHHH--H----HHHHHHHTSCCSS----------TTTTTHHH-
T ss_pred HHHCCEEEEECCCCCCHH---HHHHH-------HHHHHHHH--H----HHHHHHCCCCCCC----------HHHHHHHH-
T ss_conf 976684774332715867---99999-------99999999--9----9999975998622----------68999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------CCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 88999998989889999999860---------------899995200000378655022767451222101379986566
Q 000525 695 LSQASVDAFKHVFWDIQNLAYKY---------------GSKDNSLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRF 759 (1443)
Q Consensus 695 L~~~~~~~~~~~~~~i~~~~~~~---------------~~~~N~l~~Mv~sGSKGS~~Nl~Q~~~~lGqQ~~~g~~~~r~ 759 (1443)
.|.++.+++++.++++ +.+.|++++|+.||||||+.|++||+||+|||....+
T Consensus 685 -------iw~~a~e~v~~~m~~~l~~~~~~d~~G~~~~l~~~N~i~mMa~SGARGS~~qI~QLaGmrGlmakpdG----- 752 (1407)
T 3lu0_D 685 -------IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDG----- 752 (1407)
T ss_dssp -------HHHTHHHHHHHHHHTTHHHH------------CSCCHHHHHHHSSSSCCTTHHHHHSSCCCCCBCSSS-----
T ss_pred -------HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHCCCCCCCCC-----
T ss_conf -------99999999999999860213222334642236789886205400146799999999871287338998-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHEEE
Q ss_conf 86542000024889998423589544441023333799835678740358875212334--7988501899998740376
Q 000525 760 PHELSCAAWNRLRAGDNTECAKSYIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNA--DLPGTLTRRLMFFMRDLCT 837 (1443)
Q Consensus 760 p~~~~~~~~~~~~~~~~~~~~~~~~~~GfV~~sf~~GL~p~EfffH~magReGlidta~--a~sGYLqRrLik~LeDl~v 837 (1443)
..+ ..+|.|||++||+|.|||||||||||||+|||+ |+|||||||||+++||++|
T Consensus 753 ----------------------~ii-e~PI~ssFreGLtp~EyFfst~GaRKGL~DTALKTAdSGYLTRRLVdv~QDviV 809 (1407)
T 3lu0_D 753 ----------------------SII-ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809 (1407)
T ss_dssp ----------------------CBC-SSCCCCCSSSCCCHHHHHHHHHHHHHHHHHTTTTTTCTTTTTHHHHTTSTTCCB
T ss_pred ----------------------CCC-CHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCEEE
T ss_conf ----------------------874-101322520279777852102320112345244424321478899886465499
Q ss_pred EEC--CEEEC------CCCCEEEE----EEECCCCCC-------------------------------------------
Q ss_conf 335--64870------47761788----873157999-------------------------------------------
Q 000525 838 AYD--GTVRN------AYGNQIVQ----FSYNIEGTS------------------------------------------- 862 (1443)
Q Consensus 838 ~YD--gTVRn------s~G~~Iiq----~~yg~~g~~------------------------------------------- 862 (1443)
.++ ||.|- ..|..++. .++|..-..
T Consensus 810 ~e~DCGT~~Gi~v~~~~~~~~vi~~L~~ri~GRv~a~di~~p~tgevi~~~n~~I~e~~a~~i~~~gi~~V~IRS~LTC~ 889 (1407)
T 3lu0_D 810 TEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCD 889 (1407)
T ss_dssp CCCSCCCCSSCEEEESSCCCSSSSCCCCCCSSCBBSSCBCCSSSCCBCSSCBCCHHHHHHHHHTTTTCSEEEECCSSSCS
T ss_pred EECCCCCCCCEEEEEEECCCEEEEEHHHHEEEEEEHHHEECCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCEEEC
T ss_conf 74678998887999860498687664340242555867254889938973898379999999998699889971864464
Q ss_pred ---------------CCCCCCCCCEECCCCCCCHHHHHHHCC---CCCCCCCC-----------CCCCCCCHHH---HCC
Q ss_conf ---------------999655880001455234148988200---46542003-----------4543331122---104
Q 000525 863 ---------------TPTGEIGDQPVGSLSACAISEAAYSAL---DQPISLLE-----------TSPLLNLKNV---LEC 910 (1443)
Q Consensus 863 ---------------~~~~~~~Ge~VG~~aAqSigEp~tq~l---~~~~~~l~-----------~~gl~rLkEi---l~~ 910 (1443)
.-..+.-||+||++||||||||+||+| +|..++.. ..|..++.+. .+.
T Consensus 890 s~~GVC~~CYGrdLa~g~~V~iGEAVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~a~~~G~v~~~~~~~v~~~ 969 (1407)
T 3lu0_D 890 TDFGVCAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNS 969 (1407)
T ss_dssp CSSSBCSTTTCSCSSSSSCCCSSCCTTHHHHHHHHSGGGSSCCSCTTCCCCCCCCCCCSCEECCSCEEEECCSCCCEECT
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEECCEEEECC
T ss_conf 89850477769050489883157355466320048875412635233066223432100167334768997166799868
Q ss_pred CCCCCCCCCEEEEEHHHHCCCC--CCCCHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCCCCCCCCCEEEEEE-EE----
Q ss_conf 9987777647621011100012--3471143889985011002620011279998189986556686079998-20----
Q 000525 911 GSKKSNADQTMSLFLSNKLGKR--RHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFH-VR---- 983 (1443)
Q Consensus 911 ~~~~k~~~~~~~l~Ls~~~~k~--~~~~e~~a~~Vk~~Le~itL~di~~~i~i~y~p~~~~~~~~sp~v~~i~-Ld---- 983 (1443)
....-...+...+.+.+...+. ++...+.+......=+.+.-++ +.-.|+|.......-..-.++|. +.
T Consensus 970 ~g~~vv~~r~~~i~i~d~~g~~~~~~~ip~gs~l~v~~g~~V~~g~----~ia~wDp~~~piise~~G~v~f~d~~~g~t 1045 (1407)
T 3lu0_D 970 SGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGE----TVANWDPHTMPVITEVSGFVRFTDMIDGQT 1045 (1407)
T ss_dssp TSCEECCCSSEEEEEECSSCCBCCCEEECTTCEESSCSSCEECTTC----EEEECCSSCCCEECSSCEEEEEESCCBTTT
T ss_pred CCCEEEEECCEEEEEECCCCCEEEEEECCCCCEEEECCCCEECCCC----EEEEEECCCEEEEECCCEEEEEEEECCCCE
T ss_conf 8988999467189998489967889975889789970889962798----899996676059963525899765036833
Q ss_pred --HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC----------------------CCCCCCCCCCCCE
Q ss_conf --9889980999899999999844666642103689504523765----------------------6522113579934
Q 000525 984 --KEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDMLISNKDC----------------------SSINMQKECNDAF 1039 (1443)
Q Consensus 984 --ke~l~~~~L~i~~i~~~i~~~~~~~~~~lk~~~~~i~i~~~~c----------------------~~~~~~~~~~~~~ 1039 (1443)
++.-+..++.-..|++.-.... .-+...|.+.+...+- +..+...++...
T Consensus 1046 ~~~~~d~~tg~~~~~v~~~~~~~~-----~~~~~~p~i~i~~~~g~~~~~~~~~~~~~y~lp~~a~~~v~~g~~v~~g~- 1119 (1407)
T 3lu0_D 1046 ITRQTDELTGLSSLVVLDSAERTA-----GGKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGD- 1119 (1407)
T ss_dssp EEEEECSSSCCEEEEECCSSSSCT-----TTTSCCCEEEEECSSSCBCBCTTSCCBCEEECCTTCCCCCCSSCEECTTC-
T ss_pred EEEEECCCCCCEEEEEEECCCCCC-----CCCCCCCEEEEECCCCCEEECCCCCCCEEEECCCCCEEEECCCCEECCCC-
T ss_conf 678751677956899973054556-----55567743999769998874247876426745898489954798851686-
Q ss_pred EEEEEEECCC--CCCHHHHHHHHHHHC----CCCCCCEEECCCCCEEEEEEECCCCC--CCCC-CCC-CCCEEEEEEEEC
Q ss_conf 9999951355--443242999999860----22336255212561189985134223--4678-899-975199999321
Q 000525 1040 CVTVMIVENF--KRTSIDLETIQMWVM----PFLLKTVVKGFREIKKVDILWKDKQK--ASKS-HDD-SFGELYLRVSMS 1109 (1443)
Q Consensus 1040 ~i~v~~~~~~--~~~~~~l~~l~~~ii----p~ll~~vvkG~~~I~rv~I~~~~~~~--~~~~-~~~-~~~el~l~~~~s 1109 (1443)
.+.-.+.+.. ++..-.|-.+.+ +. |+- ..++..+.|+-+ +-...+.+ .... ... ...|+.+-
T Consensus 1120 vlakip~~~~k~~DIt~GLprv~e-LfEar~pk~-~a~i~ei~G~v~--~~~~~~~~~~~~i~~~~g~~~~~y~i~---- 1191 (1407)
T 3lu0_D 1120 TLARIPQESGGTKDITGGLPRVAD-LFEARRPKE-PAILAEISGIVS--FGKETKGKRRLVITPVDGSDPYEEMIP---- 1191 (1407)
T ss_dssp EEECCCCCCCCSSCCCCSHHHHHH-HHTTCCCSS-CCCCCSSCSCCE--ECCCCSSCEEEECCCSSCCTTCEEEEC----
T ss_pred EEEECCHHHCCCCCHHCCCHHHHH-HHHCCCCCC-CEEEECCCEEEE--EEECCCCCEEEEEEECCCCEEEEEECC----
T ss_conf 688633143164303137278998-875048988-527723405999--721168845999971899705899746----
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCC-----CCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 55444014778854100344410-----1334577839999998809999999999999973116974488899998831
Q 000525 1110 GQCHITSLWSALMNDCHQIMDMI-----DWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANT 1184 (1443)
Q Consensus 1110 ~~~~~~~~~~~ll~~~~~~~~~i-----d~~rt~~n~I~ei~~~lGIEAAr~~ii~ei~~~~~~~G~~V~~rHl~LlAd~ 1184 (1443)
.|..++ +.+|- |.-.--+.++++|.+++||||++++|++|++.|+..||+.|+.||+++|++.
T Consensus 1192 -------~~~~~~-----v~~gd~v~~G~~l~~G~~~p~dil~v~Giea~~~ylv~Evq~VYr~QGV~IndKHIEvIvrq 1259 (1407)
T 3lu0_D 1192 -------KWRQLN-----VFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQ 1259 (1407)
T ss_dssp -------SSSCCC-----CCSSSCCCTTCCCSSSCCCHHHHHHHSCHHHHHHHTTTTTHHHHHHHTCCCCSHHHHTTTGG
T ss_pred -------CCCEEE-----ECCCCEECCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf -------896355-----15899874798746899999999986399999999999999999866943021148899999
Q ss_pred CCCEEEE----------------------------------------EECCHHHHHHHHCCCCCCCHHHHCCCCCCHHHH
Q ss_conf 0321238----------------------------------------512655455330147876500112233627999
Q 000525 1185 LSATGEF----------------------------------------VGLNAKGLALQRKHSSVSSPFVQAFFSNPGASF 1224 (1443)
Q Consensus 1185 MT~~G~~----------------------------------------~gi~r~G~~~~~~~~~~~Spl~~asFe~t~~~l 1224 (1443)
||.+.++ +|||+ .||.+.|+|+.||||+|+++|
T Consensus 1260 M~~kv~I~d~Gdt~fl~Ge~vd~~~~~~~N~~~~~~g~~pa~~~p~llGITk-------asl~t~SflSaASFQeTtkvL 1332 (1407)
T 3lu0_D 1260 MLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITK-------ASLATESFISAASFQETTRVL 1332 (1407)
T ss_dssp GTSBCEESSCSSSCSCCCCBSHHHHHHHHHHHTTSSSCCCCCEECCCCCTTT-------TTTSCSCTTTGGGSSCHHHHH
T ss_pred HHCCEEEEECCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECEEE-------CCCCCCCCHHHCCHHHHHHHH
T ss_conf 7274699417876667754220999999999999769998433444512242-------123578850222056689999
Q ss_pred HHHHHHCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 99996089757889200000489987657520
Q 000525 1225 IKAAKAGAVDNLQGSVDALGWGKVPSVGTGGH 1256 (1443)
Q Consensus 1225 ~~AA~~g~~D~l~gvs~~ii~G~~~~~GTgg~ 1256 (1443)
.+||.+|++|+|.|++||+|+|+++|+|| |.
T Consensus 1333 teAAi~Gk~D~L~GlkENVIvG~lIPaGT-G~ 1363 (1407)
T 3lu0_D 1333 TEAAVAGKRDELRGLKENVIVGRLIPAGT-GY 1363 (1407)
T ss_dssp HHHHHTCCEECCCSSHHHHTTTCCCTTTT-TS
T ss_pred HHHHHCCCCCCCCCCCCCEEECCCCCCCC-CC
T ss_conf 99886389775788532527546346776-82
No 7
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=483.36 Aligned_cols=284 Identities=20% Similarity=0.332 Sum_probs=209.1
Q ss_pred CCCEEEEEEEEECCCHHHHHHCCCEEEECC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 783001058998389699974464087048-----------987889999999999878899999987889661144473
Q 000525 12 VPSGILTGISLGISTDTEKEKLSVMEIGAV-----------SEVTNPRLGLPNPTNECSSCGAKDRKACEGHFGFIKFPF 80 (1443)
Q Consensus 12 ~~~~~I~~I~F~i~S~eEI~klSv~eIt~~-----------~GL~DpRLG~~~~~~~C~TCg~~~~~~CpGHFGhIeL~~ 80 (1443)
..+++|++|+||++||+||+++||++|+++ |||+|||||++++...|+|||. +..+||||||||||+.
T Consensus 64 d~~~~i~~i~F~~~s~eeI~~~Sv~~I~~~~~~d~~~~P~~gGl~D~rlG~~~~~~~C~TCg~-~~~~CpGHfGhIeL~~ 142 (436)
T 3qqc_A 64 EGGKVIGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGG-RAGECPGHFGHIELAR 142 (436)
T ss_dssp C--CEEEEEECCBCCHHHHHHTEEEECCBCCCCC----CCCSBSSCSSSCCCSSCCCCSSSCC-CSSSCCCCEEEEEEEE
T ss_pred CCCCEEEEEEECCCCHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEEECH
T ss_conf 555356322631399899998488688466214788973678855754467799998899999-7772799743675042
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCHH--------HHC--------------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2234022889999972014332114673034--------301--------------134644633643546888888543
Q 000525 81 TILHPYFLSDIAKLLNSICPKCKTIRKERQK--------GAG--------------SSRKEQPRVCKYCVRNPAQWYPRM 138 (1443)
Q Consensus 81 PVfHp~f~~~i~~IL~~iC~~C~~lll~~~~--------k~l--------------~~~~~~~~~C~~C~~~~~~~~p~i 138 (1443)
|||||+|++.+++||+|+|++|++++++... +.. ...++....|++|+.. .|.+
T Consensus 143 PVfh~gF~~~I~kILr~vC~~C~klll~~~~~~~f~~~lr~~~~~~~~~k~~~~~i~~~~k~~~~C~gCG~~----qp~I 218 (436)
T 3qqc_A 143 PVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAP----QYPI 218 (436)
T ss_dssp EEECGGGHHHHHHHHHHSCSTTCCCSSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTCCSCC-----------CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC----CCEE
T ss_conf 777777999999999877787563246622299999999865430303889999999971557758663773----8648
Q ss_pred CCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHC----
Q ss_conf 1124664445843201003222001378886543344576431112346897411299999998313893457310----
Q 000525 139 RFKLSSKDLSGKTAIIVEIDEKLSKKNKKLPDDYWGFIPFDAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEF---- 214 (1443)
Q Consensus 139 ~~~~s~~~~~~k~~ii~e~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LsP~~V~~iLk~I~~e~~~~~---- 214 (1443)
+. +. ...+|..... ++. .+.++.|+|.+|+++|++|+++|+..+
T Consensus 219 r~---------------e~-----------~~~~~~~~~~----~~~--~~~k~~LtP~~vl~ifk~IsdeD~~lLGl~~ 266 (436)
T 3qqc_A 219 KF---------------EK-----------PTIYWEIRKD----EQG--NEYRHRLMPTEVRDWLEKIPDKDLPLLGLDP 266 (436)
T ss_dssp CB---------------CS-----------SSCEEEECCC---------CCCEEEECHHHHHHHHHHSCTTTGGGSSCCT
T ss_pred EE---------------EC-----------CEEEEECCCC----CCC--CCCCCCCCHHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 98---------------05-----------5122102455----445--5324121999999999867988898854465
Q ss_pred -CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHHHH----H
Q ss_conf -479884144215568998986444565556642333344799999998509807889------99999999865----3
Q 000525 215 -ILSKDAPFLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELS------HLVQDCLKISK----L 283 (1443)
Q Consensus 215 -~~rpE~liLt~LPVPPn~iRPs~~~~~~~ng~~~~eDdlT~~l~~Iv~~~~~~~~~~------~~~~~~~~~~~----~ 283 (1443)
.++||||||++|||||+++||++.+++ + ...+||+|.+|.+|+..|....... +.+.+.|+..+ .
T Consensus 267 ~~~rPewmIlt~LPVpPp~vRPsv~~~~---g-~~~edDLT~kl~~II~~N~~L~~~~~~gap~~~i~~~~~lLQ~~V~~ 342 (436)
T 3qqc_A 267 EKSRPEWMVLTVLPVPPVTARPSITLET---G-IRAEDDLTHKLVDIIRINNRLKQNIEAGAPQLIIEDLWDLLQYHVTT 342 (436)
T ss_dssp TTCCGGGGEEEEEEECCGGGSCCBCC-------CCBCCHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCEEECC---C-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6798420676402249986766278378---7-57787589999999999899999997499677899999999999875
Q ss_pred HCCCCCCCCH----------HHHHHC-CCCCCCCCCCCCHHHCCCCCCCCCCCCC-EEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 0156668841----------576501-5876667678411210014778898876-068389877533100568878642
Q 000525 284 HLDKSSRKDS----------AEVRQK-KNIDISNSSGLRWIKDVVLGKRNDDCFR-MVVTGDPNIKLKEIGIPCQVAERL 351 (1443)
Q Consensus 284 ~~~~~~~~~~----------~~~~q~-~~~~~~~~~G~r~~R~~l~GKRv~~s~R-sVI~pdp~l~~~evgiP~~~a~~l 351 (1443)
+.|+.....+ .++.|+ +||.| |||+||||||||||+| ||| .++|-+|
T Consensus 343 ~~dn~~~g~~~~~~~~~rp~ksi~~rLkGKeG-------RfR~NL~GKRVdy~~~~s~~--------------~~~~~e~ 401 (436)
T 3qqc_A 343 YINNEAPGVPPAKHKSGRPLKTLAQRLKGKEG-------RFRGNLSGGAGSGAGSGSVL--------------ARAAFEI 401 (436)
T ss_dssp HHCTTCTTCCCCBCTTSCBCCCHHHHHCC------------------------------------------------CCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-------EECCCCCCCCCCCCCCHHHH--------------HHHHHHH
T ss_conf 20578888874345789876436766246554-------11475788888866522299--------------9988998
Q ss_pred CCCEEE
Q ss_conf 730310
Q 000525 352 QISERL 357 (1443)
Q Consensus 352 t~pe~V 357 (1443)
|+|-.+
T Consensus 402 ~~~~~~ 407 (436)
T 3qqc_A 402 TVQHLF 407 (436)
T ss_dssp CHHHHH
T ss_pred HHHHHH
T ss_conf 799999
No 8
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C 4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Probab=1.00 E-value=1 Score=452.39 Aligned_cols=333 Identities=19% Similarity=0.293 Sum_probs=271.2
Q ss_pred EEEEECCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCC---CCCCC---CCCCCCCCCCHHHHCCCCCCCCCCCEEEEEH
Q ss_conf 88873157999999655880001455234148988200---46542---0034543331122104998777764762101
Q 000525 852 VQFSYNIEGTSTPTGEIGDQPVGSLSACAISEAAYSAL---DQPIS---LLETSPLLNLKNVLECGSKKSNADQTMSLFL 925 (1443)
Q Consensus 852 iq~~yg~~g~~~~~~~~~Ge~VG~~aAqSigEp~tq~l---~~~~~---~l~~~gl~rLkEil~~~~~~k~~~~~~~l~L 925 (1443)
+...|+.. .+.|||+||++||||||||+|||| ||..+ .+.+.|+||++|++++++..+ +|.+.+++
T Consensus 55 ~~~~y~r~------lv~pGEAVGiIAAQSIGEPgTQlTLrTFH~gGva~~nvT~GlPRl~Ei~~a~k~~~--tp~~~i~l 126 (395)
T 4ayb_C 55 AIKEYSEG------LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPS--TPMMTIYL 126 (395)
T ss_dssp HHHHHHHT------BCCTTCCHHHHHHHHHHHHHHTCC-------------CCCSHHHHHHHHTCCSSCS--SCEEEECC
T ss_pred HHHHHHHH------CCCCCCHHHHHHHHHCCCCHHHHCCCCCEEEEECCEEEECCCCCEEEECCCCCCCC--CCCEEEEE
T ss_conf 99999873------58997357687776507810322023405512321101347543477124654777--87238995
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHCEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 11000123471143889985011002620011279998189986556686079998209889980999899999999844
Q 000525 926 SNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQC 1005 (1443)
Q Consensus 926 s~~~~k~~~~~e~~a~~Vk~~Le~itL~di~~~i~i~y~p~~~~~~~~sp~v~~i~Ldke~l~~~~L~i~~i~~~i~~~~ 1005 (1443)
.+..... ...+..++..++.+++++++....+.+ .+|...+.++.+.++.++++++.+...+.+..
T Consensus 127 ~~~~~~~----~e~~~~~~~~ie~~~~~~~~~~~~i~~----------~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 192 (395)
T 4ayb_C 127 TDEYKHD----KEKALEVARKLEYTKIENVVSSTSIDI----------ASMSIILQLDNEMLKDKGVTVDDVKKAINRLK 192 (395)
T ss_dssp TTTGGGC----HHHHHHHHHHHHCCCHHHHEEEEEEET----------TTTEEEEEECGGGGBTTBCHHHHHHHHHHHSC
T ss_pred CCCCCCC----HHHHHHHCCCEEEEECCCEEEEEEEEE----------CCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 4654422----888876314315887221135667740----------56414552002345413744999998776522
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEE
Q ss_conf 66664210368950452376565221135799349999951355443242999999860223362552125611899851
Q 000525 1006 KAARTELKISVPDMLISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLLKTVVKGFREIKKVDILW 1085 (1443)
Q Consensus 1006 ~~~~~~lk~~~~~i~i~~~~c~~~~~~~~~~~~~~i~v~~~~~~~~~~~~l~~l~~~iip~ll~~vvkG~~~I~rv~I~~ 1085 (1443)
.....+... +...+.+.... ......|..+++ .+++++|+|+++|.|+.+..
T Consensus 193 ----------~~~~~~~~~------------~~~~~~~~~~~--~~~v~~l~~~~~----~~~~~~i~gi~gi~r~~~~~ 244 (395)
T 4ayb_C 193 ----------LGEFVIDES------------EGNTLNISFAN--IDSIAALFKLRD----KILNTKIKGIKGIKRAIVQK 244 (395)
T ss_dssp ----------CSSEEEEEC------------SSEEEEEECCS--SCCCCCTHHHHH----HHHHHCCCSSSSCCEEEEEE
T ss_pred ----------CCCEEEECC------------CCCEEEEECCC--CCHHHHHHHHHH----HCCCCEEECCCCEEEEEEEC
T ss_conf ----------675798526------------67278862378--716999999875----30361773455605877741
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 34223467889997519999932155444014778854100344410133457783999999880999999999999997
Q 000525 1086 KDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESA 1165 (1443)
Q Consensus 1086 ~~~~~~~~~~~~~~~el~l~~~~s~~~~~~~~~~~ll~~~~~~~~~id~~rt~~n~I~ei~~~lGIEAAr~~ii~ei~~~ 1165 (1443)
. .++|++.++|++ +.+++. .+++|++++++|||++|+++|||||||++|++|++.|
T Consensus 245 ~------------~~~~~~~t~g~~-----------l~~~~~-~~~vd~~~~~sn~i~eI~~vlGiEAar~~iv~Ei~~V 300 (395)
T 4ayb_C 245 K------------GDEYIILTDGSN-----------LSGVLS-VKGVDIAKVETNNIREIEEVFGIEAAREIIIREISKV 300 (395)
T ss_dssp E------------TTEEEEEEESCC-----------HHHHTT-STTCCTTTCEESCTTHHHHHHCHHHHHHHHHHHHHHH
T ss_pred C------------CCEEEEEECCCC-----------CEEEEE-EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6------------987998725877-----------315667-5022132114674054330000888899998767778
Q ss_pred HCCCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEECC
Q ss_conf 31169744888999988310321238512655455330147876500112233627999999960897578892000004
Q 000525 1166 ISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGW 1245 (1443)
Q Consensus 1166 ~~~~G~~V~~rHl~LlAd~MT~~G~~~gi~r~G~~~~~~~~~~~Spl~~asFe~t~~~l~~AA~~g~~D~l~gvs~~ii~ 1245 (1443)
|..||++||+||++|+||+||++|.+.+++|+|++.+.. |||++||||+|+++|.+||.+|+.|+|.|++||||+
T Consensus 301 ~~~~Gv~In~rHi~li~d~Mt~~G~~~~igr~g~s~~t~-----S~LsaASFqeTt~vLteAAi~Gk~D~L~GlkENVIv 375 (395)
T 4ayb_C 301 LAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKN-----SVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIII 375 (395)
T ss_dssp HHTTSCCCCHHHHHHHHHHHHGGGSCCCSSSSSHHHHCS-----CHHHHHHHSCTHHHHHHHHHTTCBCCCCSHHHHHHH
T ss_pred HHCCCCEECHHHHHHHHHHHHCCCEEECCCCCCCCCCCC-----CHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHEEC
T ss_conf 760685103378655541320136475267525657998-----999983276399999999854897778786997101
Q ss_pred CCCCCCCCCCCEEEEECCC
Q ss_conf 8998765752008897068
Q 000525 1246 GKVPSVGTGGHFDIIYSGE 1264 (1443)
Q Consensus 1246 G~~~~~GTgg~f~ll~~~~ 1264 (1443)
|+++|+|| |+|||+++..
T Consensus 376 GklipaGT-G~f~l~~~p~ 393 (395)
T 4ayb_C 376 GHPIKLGT-GMVELTMRPI 393 (395)
T ss_dssp TCCCSSGG-GTCEEEECSC
T ss_pred CCCCCCCC-CCEEEEECCC
T ss_conf 89888886-7628871566
No 9
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=1.00 E-value=1 Score=221.19 Aligned_cols=90 Identities=30% Similarity=0.506 Sum_probs=85.6
Q ss_pred CCEEECCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCC
Q ss_conf 41010238999999999974089999889323999999961299956212599992899004999984269999738981
Q 000525 1330 KSWTYNDVLRLSNALKKILHKYSIGQRLSEKDKTTVIRALYFHPRRNEKLGIEPPDIEVTYHPEHQNSRCFSLVREDGSI 1409 (1443)
Q Consensus 1330 ~~~~~~~i~~~~~~~~~il~~~~~~~~l~~~d~~~l~~ll~~Hp~~~~Kig~gi~~~~v~~~~~~~~srcf~vvr~Dg~~ 1409 (1443)
...+|+++.+|+++||+|||+|++|++|+++|+++|++||.+||++++||||||++|+|++| .| +||||||||+|||+
T Consensus 10 G~~~F~s~~~~~~~~k~iL~~y~~g~~l~~~d~~~l~~lL~~HP~~~~KiG~Gi~~i~V~~h-~~-~srCFfvvR~DGt~ 87 (104)
T 2k0m_A 10 AGHEFARKADALAFMKVMLNRYRPGDIVSTVDGAFLVEALKRHPDATSKIGPGVRNFEVRSA-DY-GTQCFWILRTDGSE 87 (104)
T ss_dssp TTEEESSHHHHHHHHHHHHHHSCTTEECCHHHHHHHHHHHHTSTTHHHHHTTCEEEEEEEES-SS-SCEEEEEEETTSCE
T ss_pred CCEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCEEEEECC-CC-CCCEEEEEEECCCE
T ss_conf 89801899999999999998689989648889999999998597278862899045998338-99-98679999958983
Q ss_pred CCCCHHHHHHHH
Q ss_conf 222189998644
Q 000525 1410 EDFSYHKCVIGA 1421 (1443)
Q Consensus 1410 ~DFSy~kci~~~ 1421 (1443)
+||||+|||++-
T Consensus 88 ~DFSy~KCv~~~ 99 (104)
T 2k0m_A 88 ERFSYKKCVLEH 99 (104)
T ss_dssp EECCGGGSSCCT
T ss_pred EEEEHHHHHHHH
T ss_conf 203589986523
No 10
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=48.36 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=39.6
Q ss_pred CCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCC
Q ss_conf 8765001122336279999999608975788920000048998
Q 000525 1207 SVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVP 1249 (1443)
Q Consensus 1207 ~~~Spl~~asFe~t~~~l~~AA~~g~~D~l~gvs~~ii~G~~~ 1249 (1443)
+-.|||.+|+||.+..+|.+|+.+|++|++.||.++|+.|+.-
T Consensus 389 ~~~s~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (436)
T 3qqc_A 389 GSGSVLARAAFEITVQHLFEAAEKGEVDNLNGVIENVLIGQKH 431 (436)
T ss_dssp ----------CCCCHHHHHHHHHHTCEEECCSSCCTTSCC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 5222999988998799999999845563056678786304333
Done!