RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 000525
(1443 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 284 bits (727), Expect = 1e-78
Identities = 214/1089 (19%), Positives = 400/1089 (36%), Gaps = 148/1089 (13%)
Query: 13 PSGILTGISLGISTDTEKEKLSVMEI---GAVSEVTN---------PRLGLPNPTNECSS 60
P + + G+ + E +SV +I + E PRLG + +C +
Sbjct: 9 PLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQT 68
Query: 61 CGAKDRKACEGHFGFIKFPFTILHPYFLSDIAKLLNSICPKCKTIRKERQKGAGSSRKEQ 120
C + C GHFG I + H F++ I K+ +C C + + + +
Sbjct: 69 CQ-EGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDE-----HNELMR 122
Query: 121 PRVCKYCVRNPAQWYPRMRFKLSSKDLSGKTAIIVEIDEKLSKK------NKKLPDDYWG 174
+++ + + + +K + + +L + + D
Sbjct: 123 Q---ALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLK 179
Query: 175 FIPF--DAQQEENSVKPNRKVLSCKQVSYLLKDVDPSIREEFILSKDAP-------FLKC 225
+ + ++ +P +VLS +++ + K + S+++ L + L C
Sbjct: 180 LVGSWKKDRATGDADEPELRVLSTEEILNIFKHI--SVKDFTSLGFNEVFSRPEWMILTC 237
Query: 226 FPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIEL------SHLVQDCLK 279
PV P R P +E + D+ T L ++ L H +++
Sbjct: 238 LPVPPPPVR----PSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 293
Query: 280 ISKLH----LDKSSRKDSAEVRQKKNIDISNSSGLR----WIKDVVLGKRNDDCFRMVVT 331
+ + H +D +++ S + L+ I+ ++GKR D R V++
Sbjct: 294 LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 353
Query: 332 GDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLE-KGELYVCRKGGLVRI 390
GDPN++L ++G+P +A+ L E + +N +RL+ + E G YV R G
Sbjct: 354 GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRID 413
Query: 391 RRIDA------LELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPL 444
R L+ G + R + D D VL NR PS+H S++A VKV+P S +N
Sbjct: 414 LRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIP-YSTFRLNLS 472
Query: 445 CCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHL 504
SP++ DFDGD ++ ++PQ+ R EL++L A+ Q+++ QS + + + QD+L
Sbjct: 473 VTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRK 532
Query: 505 LMEDSVLLSHLQMQQLQMFCPH-RFLSPDIFKISKDSVWSGKQLFSMLLPPDFEYTFPSK 563
L + Q+ + + P + P I +WSGKQ+ S+ +P +
Sbjct: 533 LTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDE 592
Query: 564 D----------VYISGGKLISAE-GSSWLRDYEGNLF-QYLIKRYRDKVLDFLYAAQEVL 611
+ I G++I + G L ++ Q+V+
Sbjct: 593 GTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVV 652
Query: 612 CEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSA 671
WL G + + + + M EI + EA+ +++
Sbjct: 653 NFWLLHNGFSTGI------GDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHG 706
Query: 672 KDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDNSLLAMFKAG 731
+ +E L++A A + ++++ N++ M AG
Sbjct: 707 MTLRES---------FEDNVVRFLNEARDKAGRLAEVNLKD--------LNNVKQMVMAG 749
Query: 732 SKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKSYIPSAVVEN 791
SKG+ + + Q S C+G Q R D + +K ++ N
Sbjct: 750 SKGSFINIAQMSACVGQQS---VEGKRIAFGFVDRTLPHFSKDDYSPESKGFVE-----N 801
Query: 792 SFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYDGTVRNAYGN 849
S+L GL P E F H++ R+ G + RRL+ + D+ YD T RN+ GN
Sbjct: 802 SYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGN 861
Query: 850 QIVQFSYN--------IEGTSTPT---------------------------GEIGDQPVG 874
++QF Y IE S T E G + +G
Sbjct: 862 -VIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILG 920
Query: 875 SLSACAISEAAYSALDQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRH 934
L + + Y L + L + N + + F +
Sbjct: 921 DLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDL 980
Query: 935 GFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKE 994
+ L VK+ E L+ + + II + Q ++ F + + +++ L +
Sbjct: 981 TIKDIVLGVKDLQENLL--VLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTK 1038
Query: 995 HSIIDSLYR 1003
+ L
Sbjct: 1039 QAFDWVLSN 1047
Score = 66.4 bits (161), Expect = 2e-11
Identities = 53/349 (15%), Positives = 129/349 (36%), Gaps = 31/349 (8%)
Query: 925 LSNKLGKRRHGFEYGALEVKNHLECLMLSDIVSTSMIIYSPQTGS--MKHFSPWI-CHFH 981
L+ L + A +++ +E L + S I Y P S + I HF
Sbjct: 1115 LTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFS 1174
Query: 982 VRKEIMKRTGLKEHSIIDSLYRQCKAARTELKISVPDML----ISNKDCSSINMQKECND 1037
+ E +++ + S +AA + +++ + + K+ + ++ ++
Sbjct: 1175 LLDEEAEQS-FDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDE 1233
Query: 1038 AFCVTVMIV---ENFKRTSIDLETIQMWVMPFLLKTV-VKGFREIKKVDILWKDKQKASK 1093
+ +V T + + + + +L+ + ++G I++V ++ D++ S
Sbjct: 1234 KLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSP 1293
Query: 1094 SHDD-SFGELYLRVSMSGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFCLAYGID 1152
+ + E L S +M ID TR + ++ GI+
Sbjct: 1294 TGEYVKEPEWVLETDGVNL-------SEVMTV-----PGIDPTRIYTNSFIDIMEVLGIE 1341
Query: 1153 AGLQFFLTNLESAISDTGKNILPEHLLIVANTLSATGEFVGLNAKGLALQRKHSSVSSPF 1212
AG + + I+ G + H+ ++ + ++ G + G +
Sbjct: 1342 AGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSN-----TGAL 1396
Query: 1213 VQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKVPSVGTGGHFDIIY 1261
++ F +A + +D+ +G + + G++ +GTG FD++
Sbjct: 1397 MRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA-FDVMI 1444
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 174 bits (443), Expect = 2e-44
Identities = 108/669 (16%), Positives = 227/669 (33%), Gaps = 84/669 (12%)
Query: 214 FILSKDAP---FLKCFPVTPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIEL 270
F+ S + P L+ PV P + R P + + +++++ R +L
Sbjct: 501 FLDSGNRPEWMILEAVPVLPPDLR----PMVQVDGGRFATSDLNDLYRRLINRNNRLKKL 556
Query: 271 ------SHLVQDCLKISKLHLD--------KSSRKDSAEVRQKKNIDISNSSGLRWIKDV 316
++++ ++ + +D + + R +++ S +
Sbjct: 557 LAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQN 616
Query: 317 VLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSWNWERLSVCISFRLLEK 376
+LGKR D R V+ P +KL + G+P ++A L L EK
Sbjct: 617 LLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKME-------------EK 663
Query: 377 GELYVCRKGGLVRIRRIDALELGDIIYRPLTDGDIVLINRPPSIHPHSLIALTVKVLPIS 436
G + + R+ D + + G +VL+NR P++H + A ++
Sbjct: 664 GIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVE-G 722
Query: 437 SVVTINPLCCSPFHGDFDGDCLHGYIPQAIGARVELTELVALDKQLINQQSGRNLLSLGQ 496
+ ++PL C F+ DFDGD + ++P + A+ E + L++ SG L +
Sbjct: 723 QSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSR 782
Query: 497 DSLTAAHLLME-----DSVLLSHLQMQQLQMFCPHRFLS-PDIFKISKDSVWSGKQLFSM 550
D + + + + L ++ ++ K++ G+ +
Sbjct: 783 DIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVF 842
Query: 551 LLPPDFEYTFPSKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYRDKVLDFLYAAQEV 610
P + V + + G + E + + L R + ++ A E+
Sbjct: 843 ANPDEALLAVAHGIVDLQDVVTVRYMG----KRLETSPGRILFARIVAEAVEDEKVAWEL 898
Query: 611 LCEWLSVRGMTVS--LSDLYLASHSCSRKILMDEI----FYGLREAQDTCNFQQLMVDSH 664
+ + ++ + +L L+D + F + T ++
Sbjct: 899 IQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEE 958
Query: 665 MNFLMSAKDSESTRSLQGEHLSY--EKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDN 722
+ D + + Q + + +++R + Q + + V ++ N
Sbjct: 959 KKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVT-QAVFKNFEENYPFN 1017
Query: 723 SLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKS 782
L M ++G++GN ++ Q GL + +F P
Sbjct: 1018 PLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVP---------------------- 1055
Query: 783 YIPSAVVENSFLTGLNPLECFIHSVTSRDSSFSDNADL--PGTLTRRLMFFMRDLCTAYD 840
V +SF GL LE FI S +R G LTR+L+ ++
Sbjct: 1056 ------VRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREA 1109
Query: 841 GTVRNAYGN 849
Y +
Sbjct: 1110 DCGTTNYIS 1118
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 31.0 bits (69), Expect = 1.2
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 1344 LKKILHKYSIGQRLSEKDKTTVIRALYFHPRR 1375
LK +L Y IGQ E+ K A+Y H +R
Sbjct: 11 LKAVLDNYVIGQ---EQAKKVFSVAVYNHYKR 39
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 132
Score = 29.4 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 625 SDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSHMNFLMSAKDSESTR 678
S+ YLA + + Y +E + CNF++L++++H N SAK + S
Sbjct: 53 SEYYLAMNKEGK-------LYAKKECNEDCNFKELILENHYNTYASAKWTHSGG 99
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation
factor DnaA C-terminal domain IV {Aquifex aeolicus
[TaxId: 63363]}
Length = 110
Score = 29.0 bits (65), Expect = 1.5
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 1329 RKSWTYNDVLRLSNALKKILHKYS---IGQRLSEKDKTTVIRAL 1369
+++ ++ +++ L + + S I + KD TTVI A+
Sbjct: 38 KRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAI 81
>d1fada_ a.77.1.2 (A:) FADD (Mort1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 95
Score = 28.0 bits (62), Expect = 2.9
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 606 AAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDT 653
+E L W + S++ L A +C ++ D + EAQ++
Sbjct: 52 RVRESLKVWKNAEKKNASVAGLVKALRTCRLNLVADLV----EEAQES 95
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 29.4 bits (65), Expect = 3.4
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 1344 LKKILHKYSIGQRLSEKDKTTVIRALYFHPRR 1375
+ L ++ IGQ K V AL RR
Sbjct: 8 IVSELDQHIIGQ---ADAKRAVAIALRNRWRR 36
>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 112
Score = 27.7 bits (61), Expect = 4.4
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 943 VKNHLECLMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLY 1002
C ++ + + P T + FS W+C H E+ ++ G +
Sbjct: 44 FSKFYPCEECAEDIRKRIDRSQPDTSTRVSFSQWLCRLH--NEVNRKLGKPDFDCSRVDE 101
Query: 1003 R 1003
R
Sbjct: 102 R 102
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden
sage (Salvia officinalis) [TaxId: 38868]}
Length = 328
Score = 28.7 bits (64), Expect = 5.1
Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 9/135 (6%)
Query: 1089 QKASKSHDDSFGELYLRVSM--SGQCHITSLWSALMNDCHQIMDMIDWTRSHPDNIRSFC 1146
+ + S E YL ++ I S + +ID + D +
Sbjct: 161 KWYHSGYTPSLDE-YLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAG 219
Query: 1147 LAYGIDAGLQFFLTNLESAISDTGKNI---LPEHLLIVANTLSATGEFVGLNAKGLALQR 1203
+ + L E A D K I + E + + K +
Sbjct: 220 IILRLPDDLGTS--YFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAI 277
Query: 1204 -KHSSVSSPFVQAFF 1217
V
Sbjct: 278 AAGYPFPDGMVAGAA 292
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, alpha chain [TaxId:
2303]}
Length = 245
Score = 28.6 bits (63), Expect = 5.3
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 314 KDVVLGKRNDDCFRMVVTGDPNIKLKEIGIPCQVAERLQISERLNSW---NWERLSVCIS 370
D +L D ++++ D LKE+ + A+ + + + +V +S
Sbjct: 31 MDKMLVDSIGD---IIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLS 87
Query: 371 FRLLEKGELYV 381
LL++ E +
Sbjct: 88 GELLKQAETLL 98
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 28.2 bits (62), Expect = 8.7
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 1344 LKKILHKYSIGQRLSEKDKTTVIRALYFHPRR 1375
+ L ++ IGQ K V AL RR
Sbjct: 8 IVSELDQHIIGQ---ADAKRAVAIALRNRWRR 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0651 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,380,827
Number of extensions: 257658
Number of successful extensions: 633
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 18
Length of query: 1443
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1346
Effective length of database: 1,075,786
Effective search space: 1448007956
Effective search space used: 1448007956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)