Query 000529
Match_columns 1441
No_of_seqs 487 out of 5890
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:09:34 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000529.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_300-304//hhsearch_pdb/000529hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 658.1 50.2 786 163-1081 429-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 598.4 56.3 802 164-1081 402-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 460.2 32.7 436 166-1083 106-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 451.0 32.0 436 166-1083 36-490 (538)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 450.6 40.8 427 165-1080 448-981 (986)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 444.7 37.0 215 164-413 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 438.7 31.8 216 843-1095 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 432.0 31.8 201 870-1095 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 332.9 37.2 197 870-1081 598-897 (916)
10 3tui_C Methionine import ATP-b 1.0 1 1 327.5 28.1 207 164-413 40-252 (366)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=658.05 Aligned_cols=786 Identities=20% Similarity=0.275 Sum_probs=392.5
Q ss_pred CCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCC---CEEEEECCCCCCCC
Q ss_conf 343233151789959769999869999679999999469799998310999978407997755---20899747998899
Q 000529 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIG 239 (1441)
Q Consensus 163 ~~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~---~~~aYv~Q~D~~~~ 239 (1441)
...++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.++|+++++...+ +.++||+|+. ++.
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~-~Lf 504 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEP-ALF 504 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCC
T ss_pred CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCC-EEE
T ss_conf 9874333318862288278998058985778888754565164---486157996501125999850466658753-320
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999997672178740345567359988419999998589987620012456799999999909953234433564
Q 000529 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1441)
Q Consensus 240 ~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~ 319 (1441)
+.||||||.|+... .+.++..+|+...... | .+-.|++..||.||+.
T Consensus 505 ~~TI~eNI~~g~~~-------------------------~~~~~v~~a~~~a~l~-----~---~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 505 NCTIEENISLGKEG-------------------------ITREEMVAACKMANAE-----K---FIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp SEEHHHHHHTTCTT-------------------------CCHHHHHHHHHHTTCH-----H---HHHHSTTTTSSEESSS
T ss_pred CCCHHHHHHHHCCC-------------------------CHHHHHHHHHHHCCCH-----H---HHHCCCCCCCCEECCC
T ss_conf 78616788641552-------------------------2099999999875654-----6---8870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 56678754666899999973398534222599799999899999999997671399599999459215983049499955
Q 000529 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1441)
Q Consensus 320 ~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~ 399 (1441)
+..||||||||++||||++.+|+|++||||||+||+.+...|.++|+++. .++|+|+..|+. .+...+|+|++|+
T Consensus 552 -G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrl--s~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 552 -GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRL--STIRNADLIISCK 626 (1321)
T ss_dssp -SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCT--TTTTTCSEEEEEE
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCH--HHHHHCCEEEEEE
T ss_conf -88777778799999998725999899845544688789999999999984--798899973638--7898689899963
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHH--HCCCHHHHHH--HHCCCCC---------C--CCCCHHHHHHH
Q ss_conf 982999719877999998559879999993569974--0591345555--3106999---------7--55698899999
Q 000529 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSKKDQEQY--WAHKDRP---------Y--RFVKVQEFVAA 464 (1441)
Q Consensus 400 ~G~ivy~Gp~~~~~~~F~~~G~~cp~~~~~aDfl~~--v~s~~~~~~~--~~~~~~~---------~--~~~~~~~~~~~ 464 (1441)
+|+++.+|+++++++- + ...++.... .....+.... ....... . .....++....
T Consensus 627 ~G~ive~Gth~eL~~~-------~---g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQ-------Q---GLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNR 696 (1321)
T ss_dssp TTEEEEEECHHHHHTT-------T---CHHHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCEEECCCCHHHHHHH-------H---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9965136899999985-------3---27999999622122223323344332232111222223422222221102211
Q ss_pred HHHCHHHHH----HHHHHCCCCCCCCCC--CCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---
Q ss_conf 971612222----476404964454321--111-2476554535899999999999996116288999999999999---
Q 000529 465 FQSFHVGQK----LSDELQTPFDKSKSH--RAA-LTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSIT--- 534 (1441)
Q Consensus 465 ~~~~~~~~~----~~~~l~~~~~~~~~~--~~~-~~~~~y~~s~~~~~~~~~~R~~~l~~R~~~~~~~~~~~~~~~a--- 534 (1441)
.+.+..+.. ..++......+.... ... ........+.+.. +...+.....+....+...+.+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~i~~~~~ 768 (1321)
T 4f4c_A 697 VRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEI--------LYHARPHALSLFIGMSTATIGGFIY 768 (1321)
T ss_dssp -------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHH--------HHHTGGGHHHHHHHHHHHHHGGGHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10132124567740257775315403899999999707863109999--------9998778999999999999999999
Q ss_pred ----HHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ----999886542358-9875445201567999999999--997899999864103357874305876836599999999
Q 000529 535 ----LVYMTLFFRTKM-HKDSVTDGGIYAGALFFTIVMP--LFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWIL 607 (1441)
Q Consensus 535 ----li~gtif~~~~~-~~~~~~~~~~~~g~lf~~i~~~--~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~ 607 (1441)
++.+. ++.... +.........+...+|..+... .+..............+..+-|.. +-..+.
T Consensus 769 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~---------l~~~il 838 (1321)
T 4f4c_A 769 PTYSVFFTS-FMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNK---------LFRNVL 838 (1321)
T ss_dssp HHHHHHHHH-HHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_conf 999999999-9987517934556678999999999999999999999999999999999999999---------988873
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHHH
Q ss_conf 8329989889998887550477888457999999---------9999999999999999982010789999999--9999
Q 000529 608 KIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYL---------LLLAFNQMISGLFRFLGAIGRNLVVAYTFGS--FAVL 676 (1441)
Q Consensus 608 ~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~l---------~~~l~~~~~~~l~~~iaa~~~~~~vA~~~~~--~~~l 676 (1441)
+.|+.+++.. ....|+....+. +...+......++.+++++.-.......++. ++++
T Consensus 839 ~~~~~ffd~~------------~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~ 906 (1321)
T 4f4c_A 839 SQHIGFFDSP------------QNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAIL 906 (1321)
T ss_dssp TSCSSSTTSG------------GGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCHHHCCC------------CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHH
T ss_conf 4993332167------------8884888850250599999999999999999865377770221378689999999988
Q ss_pred HHHHHHCCCCCC----CCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCC-----CCH
Q ss_conf 998775121165----43245899979671999999999986506997754468876441677650245444-----411
Q 000529 677 VLLALGGFVLSR----EEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFA-----HAY 747 (1441)
Q Consensus 677 ~~~l~~Gf~i~~----~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~-----~~~ 747 (1441)
+++++..++..+ ......-......+...-...++......+.. ...-..+.+...... ...
T Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e---------~~~~~~~~~~~~~~~~~~~~~~~ 977 (1321)
T 4f4c_A 907 PIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARE---------DTFYENFCEKLDIPHKEAIKEAF 977 (1321)
T ss_dssp HHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999888988999999627988861414---------88999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC-------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4789799999999-99999999999840646-------------------788542221222100001246743345788
Q 000529 748 WYWLGLGALFGFI-LLLNVGFALALTFLNQF-------------------EKPRAVITEEFESDEQDNRIGGTVQLSNCG 807 (1441)
Q Consensus 748 ~~w~~~g~l~~~~-~~f~~~~~l~L~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1441)
+.+...+...... +...+.+.++....... ..+................... ++..-.
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~--ri~~~l 1055 (1321)
T 4f4c_A 978 IQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGG--IIFGML 1055 (1321)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf 999999999999999999999875788753765421478999999998778899999999999999999999--899986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEE
Q ss_conf 99998755688886310014897777865567872026701387872441000148887861652050678848819999
Q 000529 808 ESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTAL 887 (1441)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai 887 (1441)
.. ..+.......+. .+.....+.|+|++++++.. +...+|+|+|+.++|||.+||
T Consensus 1056 ----~~----------~~~~~~~~~~~~-~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1056 ----RK----------ISKIDSLSLAGE-KKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp ----HC----------CCSSCTTCCCSB-CCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEE
T ss_pred ----HC----------CCCCCCCCCCCC-CCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEE
T ss_conf ----07----------665777667787-88888818999879857999----------988212451699889899999
Q ss_pred ECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 6469997478997361897886279999995920771---1223078996158988988898899999877119999998
Q 000529 888 MGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNS 964 (1441)
Q Consensus 888 ~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~ 964 (1441)
+|+||||||||+++|.|... +.+|+|.+||.+.+. ..+|+.++||+|++.++. -|+|||+.|+. -|.+.+.
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~sd 1184 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVTM 1184 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSCH
T ss_pred ECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCCH
T ss_conf 89999819999999956863--899789999998654999999854599878997327-23999974549---9999999
Q ss_pred HHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 899999999999839964-------2223346988776798898899999999619976698299999999999999999
Q 000529 965 ETRKMFIEEVMELVELKP-------LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037 (1441)
Q Consensus 965 ~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~ 1037 (1441)
++ ++++++..++.+ -.|+.||..|. .||||||||++|||+|+++|+||+||||||+||+.+...|++.
T Consensus 1185 ~e----i~~Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~ 1259 (1321)
T 4f4c_A 1185 AQ----VEEAARLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259 (1321)
T ss_dssp HH----HHHHHHHTTCHHHHHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHH
T ss_pred HH----HHHHHHHHCCHHHHHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99----999999829849997176789998238891-5699999999999999717998999681115789999999999
Q ss_pred HHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99998669989999647868999862758799259499997189
Q 000529 1038 VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1441)
Q Consensus 1038 l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~~ 1081 (1441)
|++.. +|+|+|+++|+++. ...+|+|++|+ +|+++.+|+.
T Consensus 1260 l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld-~G~IvE~Gth 1299 (1321)
T 4f4c_A 1260 LDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS-NGTIIEKGTH 1299 (1321)
T ss_dssp HTTTS-SSSEEEEECSSSST--TTTCSEEEEES-SSSEEEEECH
T ss_pred HHHHC-CCCEEEEECCCHHH--HHHCCEEEEEE-CCEEEEECCH
T ss_conf 99973-99989996068999--99699999998-9899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=598.35 Aligned_cols=802 Identities=18% Similarity=0.216 Sum_probs=377.8
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4323315178995976999986999967999999946979999831099997840799775---5208997479988999
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~---~~~~aYv~Q~D~~~~~ 240 (1441)
..++|+|+|+.++||+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..+ ++.++||+|+..+++
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~- 477 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA- 477 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCC-
T ss_conf 871012545897599889998999997999999980788999---7389999998775799999865489868875377-
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999976721787403455673599884199999985899876200124567999999999099532344335645
Q 000529 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1441)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1441)
.||+||+.|+.... ..+...+ ..+.+ . .+.. +-.|++..||.+|+ .
T Consensus 478 ~ti~eNi~~g~~~~----~~~~~~~---~~~~~------------------~------~~~~--i~~l~~g~~t~~~~-~ 523 (1284)
T 3g5u_A 478 TTIAENIRYGREDV----TMDEIEK---AVKEA------------------N------AYDF--IMKLPHQFDTLVGE-R 523 (1284)
T ss_dssp SCHHHHHHHHCSSC----CHHHHHH---HHHHT------------------T------CHHH--HHHSTTGGGCCCSS-S
T ss_pred CCHHHHHHCCCCCC----CHHHHHH---HHHHH------------------C------CHHH--HHHCCCCCCCCCCC-C
T ss_conf 66999974579899----9999999---99982------------------9------6999--97465633450147-8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 66787546668999999733985342225997999998999999999976713995999994592159830494999559
Q 000529 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1441)
Q Consensus 321 ~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~ 400 (1441)
+..||||||||++||++++.+|++++||||||+||+.+...+.+.++... .++|+++ +.|....+ ..+|+|++|++
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~i-~~~d~i~vl~~ 599 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRLSTV-RNADVIAGFDG 599 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCHHHH-TTCSEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHHHH-HCCCEEEEEEC
T ss_conf 78659999999999999952999899979877779999999999999973--9998999-94077899-74998999989
Q ss_pred CEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHH-HH---HCCCCCCCCCCHHHHHHHH-HHCHHHHHHH
Q ss_conf 82999719877999998559879999993569974059134555-53---1069997556988999999-7161222247
Q 000529 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ-YW---AHKDRPYRFVKVQEFVAAF-QSFHVGQKLS 475 (1441)
Q Consensus 401 G~ivy~Gp~~~~~~~F~~~G~~cp~~~~~aDfl~~v~s~~~~~~-~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 475 (1441)
|+++++|+++++++- .| ..++.........+.+. .. .............+..... +.........
T Consensus 600 G~i~~~g~~~~l~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1284)
T 3g5u_A 600 GVIVEQGNHDELMRE---KG-------IYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSIC 669 (1284)
T ss_dssp SCCCCEECHHHHHHT---TS-------HHHHHHHHTC-------------------------------------------
T ss_pred CEEEEECCHHHHHHC---CC-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999997889999867---87-------79999997430022111333333222223443333333320003454333445
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHH---HHHHHHHHHH---HHHCCCCCC
Q ss_conf 640496445432111124765545358999999999999961162889-999999---9999999988---654235898
Q 000529 476 DELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVY-IFKLIQ---IGSITLVYMT---LFFRTKMHK 548 (1441)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~~l~~R~~~~~-~~~~~~---~~~~ali~gt---if~~~~~~~ 548 (1441)
.. . ..+................+.+..++.. .+. +...... .+.++. ......+.+. .+.... ..
T Consensus 670 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 741 (1284)
T 3g5u_A 670 GP-H-DQDRKLSTKEALDEDVPPASFWRILKLN-STE----WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG-PP 741 (1284)
T ss_dssp ----------------CCCCCSCCCTTHHHHHH-HHT----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-ST
T ss_pred CC-C-CCCCCCCHHHHHHCCCCCHHHHHHHHHH-CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC
T ss_conf 64-2-2332110245553136625899999984-515----799999999999999999999999999999985568-50
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7544520156799999999999--78999998641033578743058768365999999998329989889998887550
Q 000529 549 DSVTDGGIYAGALFFTIVMPLF--SGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYV 626 (1441)
Q Consensus 549 ~~~~~~~~~~g~lf~~i~~~~~--~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~ 626 (1441)
........+...++..+....+ ..............+..+-|. .+-..+.+.|+.+++.
T Consensus 742 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ff~~---------- 802 (1284)
T 3g5u_A 742 ETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSWFDD---------- 802 (1284)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHHHHS----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHCC----------
T ss_conf 336779999999999999999999999999999999999999999---------9999998399888757----------
Q ss_pred CCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHH----HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 477888457999999999---------9999999999999----982010789999999999999877512116543245
Q 000529 627 IGYDPNAGRFFKQYLLLL---------AFNQMISGLFRFL----GAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKK 693 (1441)
Q Consensus 627 ~g~~~~~~rff~~~l~~~---------l~~~~~~~l~~~i----aa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~ 693 (1441)
-....|+....+.--. .+......+..++ ..+.-+...+. ..++.++++++.+++..+
T Consensus 803 --~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~l--v~l~~~p~~~~~~~~~~~----- 873 (1284)
T 3g5u_A 803 --PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL--LLLAIVPIIAIAGVVEMK----- 873 (1284)
T ss_dssp --CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHH--HHHHHHHHHHHHHHHHHH-----
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-----
T ss_conf --89988999999999999999999999999999999999999999999699999--999999999999999999-----
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 89997967199999999998650699775446887644167765024544---44114789799999999999-999999
Q 000529 694 WWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFF---AHAYWYWLGLGALFGFILLL-NVGFAL 769 (1441)
Q Consensus 694 ~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~---~~~~~~w~~~g~l~~~~~~f-~~~~~l 769 (1441)
+..-.....--.+...+-...|..........-+.....-..+.+..... ......|.+ ...++.... .+...+
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 951 (1284)
T 3g5u_A 874 MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFG--ITFSFTQAMMYFSYAA 951 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999988999998465999999999999999999999999999--9999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCC-C-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99840646788542221222-1-----00001246743345788999987556888863100148977778655678720
Q 000529 770 ALTFLNQFEKPRAVITEEFE-S-----DEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYS 843 (1441)
Q Consensus 770 ~L~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1441)
++.+........ .++.... . ..............+.......+..+.........+.......+...+.....
T Consensus 952 ~~~~g~~lv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~ 1030 (1284)
T 3g5u_A 952 AFRFGAYLVTQQ-LMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGN 1030 (1284)
T ss_dssp HHHHHHCCCSSS-CSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCC
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999999909-8069999999999999999999999999999999999999999983887666655566545677785
Q ss_pred EEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 26701387872441000148887861652050678848819999646999747899736189788627999999592077
Q 000529 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1441)
Q Consensus 844 l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 923 (1441)
+.++|+++.++.. +...+|+|+|+.++|||.+||+|+||||||||+++|+|... +.+|+|.++|.+.+
T Consensus 1031 i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1031 VQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIK 1098 (1284)
T ss_dssp EEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTT
T ss_pred EEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 7999989977999----------98700203059976998899988999978999999946867--89977989999800
Q ss_pred C---CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCC
Q ss_conf 1---1223078996158988988898899999877119999998899999999999839-------96422233469887
Q 000529 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-------LKPLRQSLVGLPGV 993 (1441)
Q Consensus 924 ~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-------L~~~~~~~vg~~~~ 993 (1441)
. ...++.++||+|++.+. ..||+|++.++... ...+.++ +++.++..+ +.+-.|+.+|..+.
T Consensus 1099 ~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1099 QLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp SSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred CCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 078999970268987787406-66699997466877---8999999----999999839599997270424561178889
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 76798898899999999619976698299999999999999999999986699899996478689998627587992594
Q 000529 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1441)
Q Consensus 994 ~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG 1073 (1441)
.||||||||++||++|+.+|+||+|||||+|||+.+...|++.+++. ..|+|+|+++|+++. + ..+|++++|.+ |
T Consensus 1171 -~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G 1245 (1284)
T 3g5u_A 1171 -QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-G 1245 (1284)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-B
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEEC-C
T ss_conf -33899999999999997499999986875557999999999999986-799989999558799-9-80998999989-9
Q ss_pred EEEEECCC
Q ss_conf 99997189
Q 000529 1074 REVYVGPL 1081 (1441)
Q Consensus 1074 ~~vy~G~~ 1081 (1441)
+++..|+.
T Consensus 1246 ~i~~~g~~ 1253 (1284)
T 3g5u_A 1246 KVKEHGTH 1253 (1284)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 89997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=460.22 Aligned_cols=436 Identities=24% Similarity=0.287 Sum_probs=310.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 23315178995976999986999967999999946979999831099---------9978407997-----755208997
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV---------TYNGHNMDEF-----VPERTAAYI 231 (1441)
Q Consensus 166 ~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V---------~~nG~~~~~~-----~~~~~~aYv 231 (1441)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 47998899---999999999976721787403455673599884199999985899876200124567999999999099
Q 000529 232 SQHDNHIG---EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308 (1441)
Q Consensus 232 ~Q~D~~~~---~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL 308 (1441)
.|.-...+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 53234433564566787546668999999733985342225997999998999999999976713995999994592159
Q 000529 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388 (1441)
Q Consensus 309 ~~~~dT~VG~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~ 388 (1441)
++..|..+++ |||||||||+||++|+.+|++|+|||||+|||..++.++++.|+++.. .+ ++|+.++|...++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g-~tvIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EG-KAVLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEECSCHHHH
T ss_pred CCHHCCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHH
T ss_conf 7043798056-----999999999999998459999999797435899999999999999986-69-9899996485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83049499955982999719877999998559879999993569974059134555531069997556988999999716
Q 000529 389 YNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSF 468 (1441)
Q Consensus 389 ~~lfD~IilL~~G~ivy~Gp~~~~~~~F~~~G~~cp~~~~~aDfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1441)
..++|+|++|.++...| |. ...+
T Consensus 292 ~~~adri~vl~~~~~~~-g~----------------------------------------~~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GI----------------------------------------FSKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EE----------------------------------------ECCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CE----------------------------------------ECCC----------------
T ss_conf 86589999977986445-21----------------------------------------2241----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12222476404964454321111247655453589999999999999611628899999999999999988654235898
Q 000529 469 HVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHK 548 (1441)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~~l~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1441)
+.. ++... .+.
T Consensus 315 ----------------------------~~~-----------~~~i~------------------------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KGT-----------RNGIN------------------------EFL------ 325 (607)
T ss_dssp ----------------------------EEH-----------HHHHH------------------------HHH------
T ss_pred ----------------------------HHH-----------HHHHH------------------------HHH------
T ss_conf ----------------------------327-----------99999------------------------997------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 75445201567999999999997899999864103357874305876836599999999832998988999888755047
Q 000529 549 DSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIG 628 (1441)
Q Consensus 549 ~~~~~~~~~~g~lf~~i~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g 628 (1441)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 78884579999999999999999999999982010789999999999999877512116543245899979671999999
Q 000529 629 YDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQ 708 (1441)
Q Consensus 629 ~~~~~~rff~~~l~~~l~~~~~~~l~~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~ 708 (1441)
.|+..
T Consensus 326 -----------------------------------------------------~~~~~---------------------- 330 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLK---------------------- 330 (607)
T ss_dssp -----------------------------------------------------HTEET----------------------
T ss_pred -----------------------------------------------------HHCCH----------------------
T ss_conf -----------------------------------------------------51013----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99998650699775446887644167765024544441147897999999999999999999984064678854222122
Q 000529 709 NGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEF 788 (1441)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~L~~~~~~~~~~~~~~~~~ 788 (1441)
... . .+. . ..
T Consensus 331 ------------------~~~---------~-~~~--------------------------------~--~~-------- 340 (607)
T 3bk7_A 331 ------------------DEN---------V-RFR--------------------------------P--YE-------- 340 (607)
T ss_dssp ------------------TTT---------E-ECC--------------------------------S--SC--------
T ss_pred ------------------HHH---------H-HCC--------------------------------C--CC--------
T ss_conf ------------------455---------4-301--------------------------------2--12--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCHHHCCCCCCCC
Q ss_conf 21000012467433457889999875568888631001489777786556787202670138787244100014888786
Q 000529 789 ESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDK 868 (1441)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1441)
. . .... . . . ... .....+.++|+++.+. .
T Consensus 341 --------~-~-----------~~~~-----~----~--~-~~~------~~~~~l~~~~l~~~~~-------------~ 369 (607)
T 3bk7_A 341 --------I-R-----------FTKL-----S----E--R-VDV------ERETLVEYPRLVKDYG-------------S 369 (607)
T ss_dssp --------C-C-----------CCCS-----T----T--S-CCC------CCCEEEEECCEEEECS-------------S
T ss_pred --------C-C-----------CCCC-----C----C--C-CCC------CCCEEEEEECEEEEEC-------------C
T ss_conf --------3-4-----------5657-----7----7--5-444------6752899913098744-------------3
Q ss_pred EEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 16520506788488199996469997478997361897886279999995920771122307899615898898889889
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1441)
Q Consensus 869 ~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 948 (1441)
..|+++++.+++||++||+||||||||||+++|+|...+ .+|+|.+ .+.++|++|+....+.+||.|
T Consensus 370 -~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e 436 (607)
T 3bk7_A 370 -FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYE 436 (607)
T ss_dssp -CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHH
T ss_pred -EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHH
T ss_conf -489935153279989999999998999999999669888--8628999----------027999805766778984999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 99998771199999988999999999998399642223346988776798898899999999619976698299999999
Q 000529 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1441)
Q Consensus 949 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~ 1028 (1441)
.+........ .....++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||.
T Consensus 437 ~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~ 504 (607)
T 3bk7_A 437 LLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 504 (607)
T ss_dssp HHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred HHHHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 9975312587-------789999999987699337549922-----3799999999999999748998999687447899
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999999999986-6998999964786899986275879925-949999718987
Q 000529 1029 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPLGH 1083 (1441)
Q Consensus 1029 ~~a~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~vy~G~~g~ 1083 (1441)
.+...+++.|+++++ .|.|||+++|++. .+...+|++++|.. .|+.+..|++.+
T Consensus 505 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 505 EQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 99999999999999747989999909899-999869999999598306974289899
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=451.04 Aligned_cols=436 Identities=22% Similarity=0.271 Sum_probs=308.3
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 23315178995976999986999967999999946979999831099---------9978407997-----755208997
Q 000529 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV---------TYNGHNMDEF-----VPERTAAYI 231 (1441)
Q Consensus 166 ~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V---------~~nG~~~~~~-----~~~~~~aYv 231 (1441)
.+|+|+| .+++||.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCC
Q ss_conf 479988999---99999999976721787403455673599884199999985899876200124567999999999099
Q 000529 232 SQHDNHIGE---MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308 (1441)
Q Consensus 232 ~Q~D~~~~~---lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL 308 (1441)
.|+...++. .||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 53234433564566787546668999999733985342225997999998999999999976713995999994592159
Q 000529 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388 (1441)
Q Consensus 309 ~~~~dT~VG~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~ 388 (1441)
++..|..+++ |||||||||.||++|+.+|++|+|||||++||..+..++++.|+++.. .+ .+|+.++|...++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g-~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EG-KSVLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TT-CEEEEECSCHHHH
T ss_pred CHHHHCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CC-CEEEEEECCHHHH
T ss_conf 7366098354-----899999999999998469999999897345798899999999999996-59-8799994788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83049499955982999719877999998559879999993569974059134555531069997556988999999716
Q 000529 389 YNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSF 468 (1441)
Q Consensus 389 ~~lfD~IilL~~G~ivy~Gp~~~~~~~F~~~G~~cp~~~~~aDfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1441)
..++|+|++|.+|...|.- ...+
T Consensus 222 ~~~~dri~vl~~~~~~~~~-----------------------------------------~~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYGI-----------------------------------------FSQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEEE-----------------------------------------ECCC----------------
T ss_pred HHHCCEEEEECCCCCCCCC-----------------------------------------CCCH----------------
T ss_conf 9768899998686324402-----------------------------------------2553----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12222476404964454321111247655453589999999999999611628899999999999999988654235898
Q 000529 469 HVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHK 548 (1441)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~~l~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1441)
+.. ++.+ . .. .
T Consensus 245 ----------------------------~~~-----------~~~~----------~--------~~------~------ 255 (538)
T 1yqt_A 245 ----------------------------KGT-----------RNGI----------N--------EF------L------ 255 (538)
T ss_dssp ----------------------------EEH-----------HHHH----------H--------HH------H------
T ss_pred ----------------------------HHH-----------HHHH----------H--------HH------H------
T ss_conf ----------------------------558-----------9999----------9--------87------6------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 75445201567999999999997899999864103357874305876836599999999832998988999888755047
Q 000529 549 DSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIG 628 (1441)
Q Consensus 549 ~~~~~~~~~~g~lf~~i~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g 628 (1441)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 78884579999999999999999999999982010789999999999999877512116543245899979671999999
Q 000529 629 YDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQ 708 (1441)
Q Consensus 629 ~~~~~~rff~~~l~~~l~~~~~~~l~~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~ 708 (1441)
.|+..
T Consensus 256 -----------------------------------------------------~~~~~---------------------- 260 (538)
T 1yqt_A 256 -----------------------------------------------------RGYLK---------------------- 260 (538)
T ss_dssp -----------------------------------------------------HTEET----------------------
T ss_pred -----------------------------------------------------HHCCC----------------------
T ss_conf -----------------------------------------------------40230----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99998650699775446887644167765024544441147897999999999999999999984064678854222122
Q 000529 709 NGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEF 788 (1441)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~L~~~~~~~~~~~~~~~~~ 788 (1441)
.. ..... . ...
T Consensus 261 ---------~~-------------------~~~~~--------------------------------~--~~~------- 271 (538)
T 1yqt_A 261 ---------DE-------------------NVRFR--------------------------------P--YEI------- 271 (538)
T ss_dssp ---------TT-------------------TEECS--------------------------------S--SCC-------
T ss_pred ---------HH-------------------HHCCC--------------------------------C--CCC-------
T ss_conf ---------02-------------------32034--------------------------------4--455-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCHHHCCCCCCCC
Q ss_conf 21000012467433457889999875568888631001489777786556787202670138787244100014888786
Q 000529 789 ESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDK 868 (1441)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1441)
.. ... . .. . . +.....+.++|+++.+. .
T Consensus 272 -------~~--------------~~~-----~---~~-~---~------~~~~~~l~~~~l~~~~~-------------~ 299 (538)
T 1yqt_A 272 -------KF--------------TKT-----G---ER-V---E------IERETLVTYPRLVKDYG-------------S 299 (538)
T ss_dssp -------CC--------------CCS-----S---GG-G---S------SCCCEEEEECCEEEEET-------------T
T ss_pred -------CC--------------CCC-----C---CC-C---C------CCCCEEEEEEEEEEEEC-------------C
T ss_conf -------54--------------557-----7---65-5---6------67871899930799989-------------9
Q ss_pred EEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
Q ss_conf 16520506788488199996469997478997361897886279999995920771122307899615898898889889
Q 000529 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1441)
Q Consensus 869 ~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 948 (1441)
..|+++++.+++||++||+|+||||||||+++|+|...+ .+|+|.+ ...++|++|+....+..||.|
T Consensus 300 -~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 300 -FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp -EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHH
T ss_pred -EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHH
T ss_conf -899907441289989999889999999999999679989--9718998----------746999826776788885999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 99998771199999988999999999998399642223346988776798898899999999619976698299999999
Q 000529 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1441)
Q Consensus 949 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~ 1028 (1441)
.+......... ....++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||.
T Consensus 367 ~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~ 434 (538)
T 1yqt_A 367 LLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434 (538)
T ss_dssp HHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred HHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 99864036887-------89999999997499156539944-----4899999999999999728998999398010899
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999999999999986-6998999964786899986275879925-949999718987
Q 000529 1029 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPLGH 1083 (1441)
Q Consensus 1029 ~~a~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~vy~G~~g~ 1083 (1441)
.+...+++.|+++++ .|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+
T Consensus 435 ~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 435 EQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 99999999999999867989999939899-999968999999088315740489899
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=450.62 Aligned_cols=427 Identities=22% Similarity=0.290 Sum_probs=301.7
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 3233151789959769999869999679999999469799998310999978407997755208997479-988999999
Q 000529 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQH-DNHIGEMTV 243 (1441)
Q Consensus 165 ~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~~~~~aYv~Q~-D~~~~~lTV 243 (1441)
+.+|+|+|+.+++|+.++|+|||||||||||++|+| |+| +|.+... +...+|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999999767217874034556735998841999999858998762001245679999999990995-3234433564566
Q 000529 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMRR 322 (1441)
Q Consensus 244 rEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~-~~~dT~VG~~~~r 322 (1441)
.|++.+ ...+ . ...++.+++.+||+ +..|..+++
T Consensus 514 ~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--HHCC----------H-----------------------------HHHHHHHHHHCCCCHHHHCCCCCC----
T ss_conf 999998--6127----------9-----------------------------999999999869984464398020----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 78754666899999973398534222599799999899999999997671399599999459215983049499955982
Q 000529 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1441)
Q Consensus 323 gLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL~~G~ 402 (1441)
||||||||+.||++|+.+|++++|||||+|||..+..++.+.|++ .+.| ++.++|...++..++|+|++|.+|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~t-vIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGIT-SITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSE-EEEECSCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCE-EEEEECCHHHHHHHCCEEEEEECCE
T ss_conf -799999999999999649999999797667999999999999986----7998-9999798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCC
Q ss_conf 99-97198779999985598799999935699740591345555310699975569889999997161222247640496
Q 000529 403 IV-YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTP 481 (1441)
Q Consensus 403 iv-y~Gp~~~~~~~F~~~G~~cp~~~~~aDfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (1441)
++ |.|+.+++... .| .
T Consensus 623 iv~~~G~~~e~~~~-------~~------------------~-------------------------------------- 639 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK-------CP------------------A-------------------------------------- 639 (986)
T ss_dssp EEEEESCHHHHHHH-------CG------------------G--------------------------------------
T ss_pred EECCCCCHHHHHHH-------HH------------------H--------------------------------------
T ss_conf 42677999999861-------48------------------8--------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 44543211112476554535899999999999996116288999999999999999886542358987544520156799
Q 000529 482 FDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGAL 561 (1441)
Q Consensus 482 ~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~~l~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~~~~~~~~~~~g~l 561 (1441)
. . . + + ..... .
T Consensus 640 -----~-~-----~-~--------------------------------------------~--~l~~~---~-------- 650 (986)
T 2iw3_A 640 -----A-K-----A-Y--------------------------------------------E--ELSNT---D-------- 650 (986)
T ss_dssp -----G-G-----G-S--------------------------------------------S--STTTC---C--------
T ss_pred -----H-H-----H-H--------------------------------------------H--HHHHH---H--------
T ss_conf -----9-9-----9-9--------------------------------------------8--64454---4--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999978999998641033578743058768365999999998329989889998887550477888457999999
Q 000529 562 FFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYL 641 (1441)
Q Consensus 562 f~~i~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~l 641 (1441)
T Consensus 651 -------------------------------------------------------------------------------- 650 (986)
T 2iw3_A 651 -------------------------------------------------------------------------------- 650 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999820107899999999999998775121165432458999796719999999999865069977
Q 000529 642 LLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW 721 (1441)
Q Consensus 642 ~~~l~~~~~~~l~~~iaa~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~ 721 (1441)
..+
T Consensus 651 -----------------------------------------------------------------------------~~~ 653 (986)
T 2iw3_A 651 -----------------------------------------------------------------------------LEF 653 (986)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------HHC
T ss_conf -----------------------------------------------------------------------------320
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54468876441677650245444411478979999999999999999999840646788542221222100001246743
Q 000529 722 KKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTV 801 (1441)
Q Consensus 722 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~l~~~~~~f~~~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1441)
. .+ .+ .
T Consensus 654 ~--~p----------------------------------------------------~~------------------~-- 659 (986)
T 2iw3_A 654 K--FP----------------------------------------------------EP------------------G-- 659 (986)
T ss_dssp C--CC----------------------------------------------------CC------------------C--
T ss_pred C--CC----------------------------------------------------CC------------------C--
T ss_conf 3--56----------------------------------------------------55------------------5--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEEC
Q ss_conf 34578899998755688886310014897777865567872026701387872441000148887861652050678848
Q 000529 802 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRP 881 (1441)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~p 881 (1441)
.... . ... ....+.++|+++.++. ..+.+|+|+|+.+++
T Consensus 660 ---------~~~~-----~----------~~~------~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~ 698 (986)
T 2iw3_A 660 ---------YLEG-----V----------KTK------QKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSL 698 (986)
T ss_dssp ---------CCTT-----C----------CST------TSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEET
T ss_pred ---------CCCC-----C----------CCC------CCCEEEEEEEEEEECC-----------CCCEEEECCEEEECC
T ss_conf ---------4334-----5----------667------8706999846998189-----------874134322799828
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCC----CCCCCHHHHHHHHHHHC
Q ss_conf 81999964699974789973618978862799999959207711223078996158988----98889889999987711
Q 000529 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH----SPFVTVYESLFYSAWLR 957 (1441)
Q Consensus 882 G~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~----~~~lTv~E~l~f~a~lr 957 (1441)
|+++||+|+||||||||+++|+|...+ .+|+|.++|. ..++|++|+..+ ....|++|.+.+.-...
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g 768 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTG 768 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 978999899998799999999579888--8608998686--------425763130243321001147999988775045
Q ss_pred ------------CC----------------------------------------------------CCC-----------
Q ss_conf ------------99----------------------------------------------------999-----------
Q 000529 958 ------------LP----------------------------------------------------PEV----------- 962 (1441)
Q Consensus 958 ------------~~----------------------------------------------------~~~----------- 962 (1441)
.. ...
T Consensus 769 ~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~ 848 (986)
T 2iw3_A 769 EDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRG 848 (986)
T ss_dssp SCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGG
T ss_pred CHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 02555543321034355544200011232012344445554312220021000255432000001234323443210167
Q ss_pred -----------------------CHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEE
Q ss_conf -----------------------98899999999999839964-2-2233469887767988988999999996199766
Q 000529 963 -----------------------NSETRKMFIEEVMELVELKP-L-RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 1017 (1441)
Q Consensus 963 -----------------------~~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il 1017 (1441)
........++++++.++|.+ . .+..+ ..||||||||+.||++|+.+|++|
T Consensus 849 ~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LL 923 (986)
T 2iw3_A 849 ELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLI 923 (986)
T ss_dssp GTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 776667665544324555430223234799999999976998054448980-----423999999999999998399999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 982999999999999999999999866998999964786899986275879925949999718
Q 000529 1018 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1441)
Q Consensus 1018 ~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~~gG~~vy~G~ 1080 (1441)
+|||||+|||..+...+++.++++ |.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 924 LLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 924 VLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp EEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 997986577999999999999974---997999979899-99985899999989-99998687
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=444.70 Aligned_cols=215 Identities=21% Similarity=0.287 Sum_probs=153.4
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CCCEEEEECCEE
Q ss_conf 43233151789959769999869999679999---------------------99946979999----831099997840
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPSL----KVSGRVTYNGHN 218 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL---------------------~~LaG~l~~~~----~~sG~V~~nG~~ 218 (1441)
+.++|+|||+.+++|++++|+||||||||||| +.+.|...++. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 799775520899747998-------------------8999999999999767217874034556735998841999999
Q 000529 219 MDEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279 (1441)
Q Consensus 219 ~~~~~~~~~~aYv~Q~D~-------------------~~~~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~ 279 (1441)
.... +++.++|++|... .++.+||+|++.+....... ..++..
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCH
Q ss_conf 85899876200124567999999999099532-34433564566787546668999999733985--3422259979999
Q 000529 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDIC-ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1441)
Q Consensus 280 d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~-~dT~VG~~~~rgLSGGQKKRvsiaeaLv~~~~--vLlLDEpTSGLDs 356 (1441)
. +. ...+..... .+++.+||++. .|..+++ |||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 172 -~----~~---~~~~~~~~~-~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -A----RL---ILREIRDRL-GFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHHH-HHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -H----HH---HHHHHHHHH-HHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -8----88---899999999-8999759843441497001-----89999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 989999999999767139959999945921598304949995------598299971987799
Q 000529 357 STTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVL 413 (1441)
Q Consensus 357 ~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~IilL------~~G~ivy~Gp~~~~~ 413 (1441)
.+..++++.|+++.. .+.|+|+ ++|.... ...+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-4998999-9578799-9629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=438.74 Aligned_cols=216 Identities=21% Similarity=0.252 Sum_probs=166.5
Q ss_pred EEEEECEEEEEECCCHHHCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02670138787244100014888786165205067884881999964699974789973618978862799999959207
Q 000529 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1441)
Q Consensus 843 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~is~~i~pG~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 922 (1441)
.+.+++++..+. . ..|+.+++.+++||+++|+|+||||||||+++|+|...+ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECC---
T ss_conf 699823399979-------------8-899826646889989999999999899999999578889--981899998---
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 71122307899615898898889889999987711999999889999999999983996422233469887767988988
Q 000529 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1441)
Q Consensus 923 ~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1002 (1441)
+.++|++|+.......||+|++.+...... .. ....++++++.+++.+..+..++ .|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHH
T ss_pred ------EEEEEECHHCCCCCCCCHHHHHHHHHHHCC----CH--HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHH
T ss_conf ------456761400034547779999987553112----11--69999999987599778628932-----27999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECC-CEEEEECC
Q ss_conf 99999999619976698299999999999999999999986-69989999647868999862758799259-49999718
Q 000529 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GREVYVGP 1080 (1441)
Q Consensus 1003 Rl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~illl~~g-G~~vy~G~ 1080 (1441)
|+.||++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++|+.. ++...+|++++|..+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 987500588898719
Q 000529 1081 LGHHSCHLISYFEAI 1095 (1441)
Q Consensus 1081 ~g~~~~~~~~yF~~~ 1095 (1441)
.......+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=432.00 Aligned_cols=201 Identities=18% Similarity=0.196 Sum_probs=156.0
Q ss_pred EEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 6520506788488-----19999646999747899736189788627999999592077112230789961589889888
Q 000529 870 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFV 944 (1441)
Q Consensus 870 ~iL~~is~~i~pG-----~~~ai~G~sGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~l 944 (1441)
..++++|+.+.+| |+++|+|+||||||||+++|+|...+ .+|+ ... ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCC------CCC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--7885------866----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 98899999877119999998899999999999839964222334698877679889889999999961997669829999
Q 000529 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1441)
Q Consensus 945 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs 1024 (1441)
||+|.+... .+. ... ....++++++.++|.+..+..++ .||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---68999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCCHHHHHHHHHC
Q ss_conf 999999999999999998-66998999964786899986275879925-949999718987500588898719
Q 000529 1025 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPLGHHSCHLISYFEAI 1095 (1441)
Q Consensus 1025 GLD~~~a~~i~~~l~~~~-~~g~tvi~t~Hqps~~i~~~fD~illl~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1095 (1441)
|||..+...+++.|++++ +.|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+--.....+.+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=332.92 Aligned_cols=197 Identities=27% Similarity=0.393 Sum_probs=142.6
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCCC--CC--EEE------EEEEECCCCCCCCC----
Q ss_conf 652050678848819999646999747899---------73618978--86--279------99999592077112----
Q 000529 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--GG--YIT------GDIRISGYPKKQET---- 926 (1441)
Q Consensus 870 ~iL~~is~~i~pG~~~ai~G~sGaGKTTLl---------~~L~g~~~--~g--~~~------G~i~i~g~~~~~~~---- 926 (1441)
..|+|||+.+++|++++|+|+||||||||+ +.+.+... ++ .+. +.+.++..+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred -----------------------------C-----------CEEEEEECCCCCCCC------------------------
Q ss_conf -----------------------------2-----------307899615898898------------------------
Q 000529 927 -----------------------------F-----------ARISGYCEQNDIHSP------------------------ 942 (1441)
Q Consensus 927 -----------------------------~-----------~~~~~yv~Q~d~~~~------------------------ 942 (1441)
| ..-.||+.++..+.|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------889889999987711999999889999999999983996422233469887767988988999999996199
Q 000529 943 --------FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 1014 (1441)
Q Consensus 943 --------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p 1014 (1441)
.+||.|++.|.... .....+.++++.++|.... .|.+. ..||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~~-~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQPA-TTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCCS-TTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCCC-CCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---16871-579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEEECCC
Q ss_conf ---76698299999999999999999999986699899996478689998627587992-----59499997189
Q 000529 1015 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPL 1081 (1441)
Q Consensus 1015 ---~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~illl~-----~gG~~vy~G~~ 1081 (1441)
++|+|||||+|||+.+...+++.|+++++.|.|||+++|++ +....+|++++|. +||+++..|++
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 88978999798889999999999999999996699899993799--99972999999668777789789997699
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=327.51 Aligned_cols=207 Identities=23% Similarity=0.321 Sum_probs=143.1
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCC------CCEEEEECCCCCC
Q ss_conf 4323315178995976999986999967999999946979999831099997840799775------5208997479988
Q 000529 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNH 237 (1441)
Q Consensus 164 ~~~iL~~vsg~i~pGelt~llGpsGSGKSTLL~~LaG~l~~~~~~sG~V~~nG~~~~~~~~------~~~~aYv~Q~D~~ 237 (1441)
..++|+|||+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++||+|+..+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHHHHHHCCEEEEECCCCC
T ss_conf 737887469998489899999589955999999996699999---62999999998758987999873868999278756
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999999976721787403455673599884199999985899876200124567999999999099532344335
Q 000529 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1441)
Q Consensus 238 ~~~lTVrEtL~Faa~~~~~~~~~~~~~e~~~~ek~~~i~p~~d~~~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 317 (1441)
++.+||+||+.|+.+..+.. +. +...+++.+|+.+||++.+|..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~----------~~------------------------~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTP----------KD------------------------EVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCC----------HH------------------------HHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHHCCCC----------HH------------------------HHHHHHHHHHHHCCCCHHHCCCHH
T ss_conf 88889999999999865998----------78------------------------999999999997699347619945
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 64566787546668999999733985342225997999998999999999976713995999994592159830494999
Q 000529 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1441)
Q Consensus 318 ~~~~rgLSGGQKKRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~~~~~~~Tviisl~Qp~~e~~~lfD~Iil 397 (1441)
+ |||||||||+||++|+.+|++|+|||||||||+.++.+|++.|+++....+.| |+.++|...++..++|+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~T-ii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT-ILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCE-EEEEESCHHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEE
T ss_conf 5-----89999999999999966999999979875689999999999999999737999-99995689999996999999
Q ss_pred ECCCEEEEECCHHHHH
Q ss_conf 5598299971987799
Q 000529 398 LSDGQIVYQGPRELVL 413 (1441)
Q Consensus 398 L~~G~ivy~Gp~~~~~ 413 (1441)
|++|+++..|+.+++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEECCHHHHH
T ss_conf 9899899975899997
Done!