BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000530
(1440 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 172 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 228
EE L+ LL+ L+ + + ALQ +IG+ VN +R H + +++ A+ LV WK+ V+
Sbjct: 141 EESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVD 197
>sp|F4J4Y5|MD26A_ARATH Probable mediator of RNA polymerase II transcription subunit 26a
OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1
Length = 580
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 157 KIGDAGSPRDGDKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKA 216
+I D S +D +K + LL LR L+ + ++++ L+ IGK+VN LR H + +I K A
Sbjct: 112 RIRDILSNKDDEK--DSVLLESLRKLESMSMSVDILKDTEIGKAVNGLRRHSSDKISKLA 169
Query: 217 RSLVDTWKKRVEAEMD 232
++L WK+ V+ M+
Sbjct: 170 KTLFAEWKRLVDQWMN 185
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 178 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMDARPR 236
LLR L +PV L+ LQ +G SVN LR + E+ A+SL+ +WKK ++A DA+ R
Sbjct: 30 LLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLLDAS-DAKAR 88
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 178 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMDARPR 236
LLR L +P+ L+ LQ +G SVN LR + E+ A+SL+ +WKK ++A DA+ R
Sbjct: 30 LLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDAS-DAKAR 88
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 175 LLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVE 228
LL LR L + +N++ L+ IGK+VN LR H + +I++ A++L+ WK+ V+
Sbjct: 159 LLDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVD 212
>sp|Q38796|LUMI_ARATH Homeobox protein LUMINIDEPENDENS OS=Arabidopsis thaliana GN=LD PE=1
SV=2
Length = 953
Score = 42.0 bits (97), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 120 LLAGVVAATDKFDCLNWFVQLRGLLVFDEWLQEVHKGKIGDAGSPRDGDKSVEEFLLILL 179
L+ ++ D L WF+ G+L+ WL + + LL++L
Sbjct: 216 LMEWIMQIQDA-SVLIWFLSKGGVLILTTWLSQA-------------ASEEQTSVLLLIL 261
Query: 180 RALDKLPVNLNALQ-MCNIGKSVNHLRTHKNVEIQKKARSLVDTWKK 225
+ L LP++ + + M I +SVN LR ++ +I +A+ L+ W K
Sbjct: 262 KVLCHLPLHKASPENMSAILQSVNGLRFYRISDISNRAKGLLSRWTK 308
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 40.8 bits (94), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 178 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEA 229
LLR L +P+ L+ LQ +G SVN LR + E+ A+SL+ +WKK ++
Sbjct: 29 LLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDV 81
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 40.8 bits (94), Expect = 0.087, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 150 LQEVHKGKIGDAGSPRDG--DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTH 207
+QE+ K + + +DG DK++E L+ + + L+ +IGKSV LR H
Sbjct: 1 MQEIIKCREQLEKAIKDGEFDKALE-----CLKNAKNFKITKDLLKSTDIGKSVGKLRAH 55
Query: 208 KNVEIQKKARSLVDTWKKRVEA 229
K++ I +++ L+D WK+ +E
Sbjct: 56 KDIGISSQSKELIDKWKQDIEG 77
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 40.8 bits (94), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 178 LLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEA 229
LLR L +P+ L+ LQ +G SVN LR + E+ A+SL+ +WKK ++
Sbjct: 29 LLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLLDV 81
>sp|Q90YY5|MED26_XENLA Mediator of RNA polymerase II transcription subunit 26 OS=Xenopus
laevis GN=med26 PE=2 SV=1
Length = 597
Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 23/127 (18%)
Query: 166 DGDKSVEEFLLIL--LRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDT 222
D +++ + +L + +L+K P+ AL+ +GK +N +R N ++ K+A+ L+
Sbjct: 20 DKQSNIQNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTSNEDLAKRAKKLLRN 79
Query: 223 WKKRVEAEMDARPRLPEVPHSGNRQTGASTEVAIKSLVTQPASSKTGAVKLCQGD-APTK 281
W+K +E P + N Q ++ + P S+ G C+ D APT
Sbjct: 80 WQKLIE------------PVTQNEQ-------LVRGIPNLPGSANGGGSHNCKADPAPTN 120
Query: 282 SAFSSPV 288
P+
Sbjct: 121 LLAGKPI 127
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 OS=Homo sapiens
GN=TCEB3 PE=1 SV=2
Length = 798
Score = 38.9 bits (89), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 186 PVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAEMDARP 235
P+ ++ L +GK+VN LR H++V AR LV WKK V E +A P
Sbjct: 63 PITVDILAETGVGKTVNSLRKHEHV--GSFARDLVAQWKKLVPVERNAEP 110
>sp|Q9VCP0|ELOA1_DROME Transcription elongation factor B polypeptide 3 OS=Drosophila
melanogaster GN=EloA PE=1 SV=1
Length = 643
Score = 37.7 bits (86), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 172 EEFLLILLRALDKLPVNLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWKKRVEAE 230
E+ LL + L LP+ LQ IGK+VN LR E+ A++LV WK V E
Sbjct: 25 EQRLLHCITKLFNLPIKFEHLQETGIGKTVNALRKISG-EVGVAAKTLVTKWKAMVAKE 82
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 37.4 bits (85), Expect = 0.81, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 168 DKSVEEFLLILLRALDKLPVNLNALQMCNIGKSVNHLR-THKNVEIQKKARSLVDTWKKR 226
D + ++ L LL+AL L +NL+ L IG +VN LR + K+ E+ A++L+ WK+
Sbjct: 20 DGTGQDQALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRF 79
Query: 227 VEAEMDARP 235
+ + P
Sbjct: 80 LASPAPTTP 88
>sp|Q90YL3|MED26_DANRE Mediator of RNA polymerase II transcription subunit 26 OS=Danio
rerio GN=med26 PE=2 SV=2
Length = 589
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 175 LLILLRALDKLPVNLNALQMCNIGKSVNHLRTH-KNVEIQKKARSLVDTWKKRVEAEMDA 233
+L ++ L+K P+ AL+ +GK +N +R K+ ++ K+A+ L+ W+K +E
Sbjct: 31 VLDVITNLEKYPITKEALEETRLGKLINDVRKKTKDEDLAKRAKKLLRNWQKLIEPGQGD 90
Query: 234 RPRL--PEVPHSGN 245
P P VP S N
Sbjct: 91 TPVRGPPNVPGSAN 104
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 36.2 bits (82), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 166 DGDKSVEEFLLILLRALDKLPV-NLNALQMCNIGKSVNHLRTHKNVEIQKKARSLVDTWK 224
+ +KS + +L +L LDK V L+ +G VN + NVEI K + ++ +WK
Sbjct: 14 EKNKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73
Query: 225 KRVEAEMDARPRLPEVPHS----GNRQTGASTEVAIKSLVTQPASSKTGAVK 272
+ + R R + H GN + + ++ V QPASS++ A+K
Sbjct: 74 DAINK--NKRSRQAQQHHQDHAPGNAEDKTTVGESVNG-VQQPASSQSDAMK 122
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 34.7 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 10/155 (6%)
Query: 696 NTENSKEIIVAEETPDGAGRNPEEDKAGFRVDADGAPDGKQRISGPLSTEDKVSESTRGV 755
NTE+ K I + E +N E++KA + D K +TED+ +
Sbjct: 4104 NTEDEKAIEINTEDEKAVEKNTEDEKAVEKNTEDEKAIEK-------NTEDEKAVEKNTE 4156
Query: 756 ETEAVEGSASNQ-SLEFDGENKKGVSEGLNSGVKREQKPSPITTHSESVKGKDGELLHTS 814
+ +AVE + ++ ++E + E++K V + EQ E+ +D + + +
Sbjct: 4157 DEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEQNTEDEKVVEENT--EDEKAVEKN 4214
Query: 815 GSGEDMPLKNVDEVKVEKADEVDSKSHVNQTEEQN 849
E KN ++ KV + D K + EE+N
Sbjct: 4215 TEDEKAVEKNTEDEKVVEEKIEDEKGEEQKAEEEN 4249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,218,627
Number of Sequences: 539616
Number of extensions: 27139013
Number of successful extensions: 73125
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 732
Number of HSP's that attempted gapping in prelim test: 68344
Number of HSP's gapped (non-prelim): 3600
length of query: 1440
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1310
effective length of database: 121,419,379
effective search space: 159059386490
effective search space used: 159059386490
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 68 (30.8 bits)