Query 000535
Match_columns 1437
No_of_seqs 286 out of 2168
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 16:35:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000535.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_309-313//hhsearch_pdb/000535hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 480.8 23.8 260 17-276 23-282 (350)
2 4fie_A Serine/threonine-protei 1.0 1 1 458.7 26.1 255 17-276 150-406 (423)
3 4fih_A Serine/threonine-protei 1.0 1 1 455.5 26.4 255 17-276 73-329 (346)
4 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 454.8 22.2 261 13-276 27-296 (311)
5 3ubd_A Ribosomal protein S6 ki 1.0 1 1 447.5 18.7 258 17-277 23-288 (304)
6 3hyh_A Carbon catabolite-derep 1.0 1 1 441.6 27.0 262 9-276 5-268 (275)
7 3fpq_A Serine/threonine-protei 1.0 1 1 440.9 28.0 260 12-276 19-288 (290)
8 4g3f_A NF-kappa-beta-inducing 1.0 1 1 436.4 22.9 247 17-272 57-311 (336)
9 3uto_A Twitchin; kinase, muscl 1.0 1 1 434.1 25.3 259 14-276 153-416 (573)
10 3v5w_A G-protein coupled recep 1.0 1 1 433.6 27.0 259 17-279 188-458 (689)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=480.78 Aligned_cols=260 Identities=30% Similarity=0.543 Sum_probs=245.1
Q ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 98567984842259579999999679909999993056348888999999999998179998214889998189699999
Q 000535 17 DNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHLHIIL 96 (1437)
Q Consensus 17 gnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSeEeieeLlREIkILKrLkHPNIVKLlGVfeddd~LYLVM 96 (1437)
.++|++++.||+|+||.||+|+++.+++.||+|++.+........+.+.+|+.+|++|+|||||++++++++++.+||||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 61489998898611999999999999999999999999998893211125883686459919997206631245577665
Q 000535 97 EYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNT 176 (1437)
Q Consensus 97 EYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG~VKLiDFGLAr~L~esd~k~ 176 (1437)
|||+||+|.+++...+...++|..++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.+.......
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~ 182 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELA 182 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHH
T ss_pred ECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCCCCC
T ss_conf 48899839999997389999789999999999999999998991513597899798789998976465214406885410
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 44448976677143310798966413559999999981999999999835899976248999999999899999999823
Q 000535 177 HSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERPPIPESLSPDITDFLRQCFK 256 (1437)
Q Consensus 177 ~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rppLPk~ISeELkDLIkkLLs 256 (1437)
.+.+||+.|||||++.+..|+.++|||||||++|+|++|++||.+.+..+.+.++.....++++..+|+++.+||.+||.
T Consensus 183 ~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~ 262 (350)
T 4b9d_A 183 RACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFK 262 (350)
T ss_dssp HHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 14578836039999879998959999999999999997879989969999999998089999975579999999999855
Q ss_pred HCCCCCCCHHHHHCCHHHHH
Q ss_conf 10069999999950988999
Q 000535 257 KDARQRPDAKTLLSHPWIQN 276 (1437)
Q Consensus 257 kDPekRPSAeEILkHPWLQe 276 (1437)
+||.+|||+.|+++||||++
T Consensus 263 ~dP~~R~s~~e~l~hp~~~~ 282 (350)
T 4b9d_A 263 RNPRDRPSVNSILEKGFIAK 282 (350)
T ss_dssp SSGGGSCCHHHHHTSHHHHT
T ss_pred CCHHHCCCHHHHHCCHHHHC
T ss_conf 89667908999963997616
No 2
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=458.69 Aligned_cols=255 Identities=34% Similarity=0.587 Sum_probs=232.5
Q ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 98567984842259579999999679909999993056348888999999999998179998214889998189699999
Q 000535 17 DNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHLHIIL 96 (1437)
Q Consensus 17 gnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSeEeieeLlREIkILKrLkHPNIVKLlGVfeddd~LYLVM 96 (1437)
...|++.++||+|+||.||+|+++.+|..||||++.+.... ..+.+.+|+.+|++++|||||++++++.+++.+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm 227 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 227 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS--SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHH--HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 68438616962481848999999999989999998625546--8999999999998579989871689999899999999
Q ss_pred EECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 61489998898611999999999999999999999999998893211125883686459919997206631245577665
Q 000535 97 EYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNT 176 (1437)
Q Consensus 97 EYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG~VKLiDFGLAr~L~esd~k~ 176 (1437)
|||+||+|.++++. +++++..++.|++||+.||+|||++||+||||||+|||++.++.+||+|||+|+.+.......
T Consensus 228 Ey~~gG~L~~~i~~---~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~ 304 (423)
T 4fie_A 228 EFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR 304 (423)
T ss_dssp ECCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCB
T ss_pred ECCCCCCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCC
T ss_conf 69899828988761---698999999999999999999998890446578777898589998980372654777887643
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf 4444897667714331079896641355999999998199999999983589997624899--99999998999999998
Q 000535 177 HSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERP--PIPESLSPDITDFLRQC 254 (1437)
Q Consensus 177 ~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rp--pLPk~ISeELkDLIkkL 254 (1437)
.+.+||+.|||||++.+..|+.++|||||||++|+|++|++||.+.+....+..+.....+ ..+..+|+++.+||.+|
T Consensus 305 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~ 384 (423)
T 4fie_A 305 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRL 384 (423)
T ss_dssp CCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 46664747279999779999968999999999999997879989869999999997279988765012999999999998
Q ss_pred HHHCCCCCCCHHHHHCCHHHHH
Q ss_conf 2310069999999950988999
Q 000535 255 FKKDARQRPDAKTLLSHPWIQN 276 (1437)
Q Consensus 255 LskDPekRPSAeEILkHPWLQe 276 (1437)
|.+||.+|||+.|+|+||||++
T Consensus 385 L~~dP~~R~ta~ell~Hp~~~~ 406 (423)
T 4fie_A 385 LVRDPAQRATAAELLKHPFLAK 406 (423)
T ss_dssp SCSSTTTSCCHHHHTTCGGGGG
T ss_pred CCCCHHHCCCHHHHHCCHHHCC
T ss_conf 6789568909999960987568
No 3
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=455.46 Aligned_cols=255 Identities=34% Similarity=0.586 Sum_probs=231.8
Q ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 98567984842259579999999679909999993056348888999999999998179998214889998189699999
Q 000535 17 DNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHLHIIL 96 (1437)
Q Consensus 17 gnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSeEeieeLlREIkILKrLkHPNIVKLlGVfeddd~LYLVM 96 (1437)
...|++.++||+|+||.||+|+++.++..||||++.+.... ..+.+.+|+.+|++++|||||++++++++++.+||||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm 150 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 150 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS--SGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHH--HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 57538707960272829999999899989999998527656--8999999999998679989991999999899999999
Q ss_pred EECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 61489998898611999999999999999999999999998893211125883686459919997206631245577665
Q 000535 97 EYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNT 176 (1437)
Q Consensus 97 EYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG~VKLiDFGLAr~L~esd~k~ 176 (1437)
|||+||+|.+++.. +++++..++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.+.......
T Consensus 151 Ey~~gg~L~~~l~~---~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~ 227 (346)
T 4fih_A 151 EFLEGGALTDIVTH---TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR 227 (346)
T ss_dssp CCCTTEEHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCB
T ss_pred ECCCCCCHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCC
T ss_conf 69899808999871---898999999999999999999998883556278899788799988990275753667887753
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHH
Q ss_conf 44448976677143310798966413559999999981999999999835899976248999--9999998999999998
Q 000535 177 HSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERPP--IPESLSPDITDFLRQC 254 (1437)
Q Consensus 177 ~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rpp--LPk~ISeELkDLIkkL 254 (1437)
.+.+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+....+..+.....+. .+..+|+++++||.+|
T Consensus 228 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~ 307 (346)
T 4fih_A 228 KSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRL 307 (346)
T ss_dssp CCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 46562758279999779999968999999999999997879989859999999997179998875022999999999998
Q ss_pred HHHCCCCCCCHHHHHCCHHHHH
Q ss_conf 2310069999999950988999
Q 000535 255 FKKDARQRPDAKTLLSHPWIQN 276 (1437)
Q Consensus 255 LskDPekRPSAeEILkHPWLQe 276 (1437)
|.+||.+|||+.|+++||||++
T Consensus 308 L~~dP~~R~ta~e~l~Hp~~~~ 329 (346)
T 4fih_A 308 LVRDPAQRATAAELLKHPFLAK 329 (346)
T ss_dssp SCSSTTTSCCHHHHTTCGGGGG
T ss_pred CCCCHHHCCCHHHHHCCHHHCC
T ss_conf 6799568909999960986568
No 4
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=454.81 Aligned_cols=261 Identities=28% Similarity=0.534 Sum_probs=232.7
Q ss_pred CCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCE
Q ss_conf 642398567984842259579999999679909999993056348-8889999999999981799982148899981896
Q 000535 13 SKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIA-QEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSH 91 (1437)
Q Consensus 13 setLgnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lS-eEeieeLlREIkILKrLkHPNIVKLlGVfeddd~ 91 (1437)
.+.-.++|++++.||+|+||+||+|+++.+++.||+|++.+.... ....+.+.+|+.+|++|+|||||++++++++++.
T Consensus 27 ~~~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~ 106 (311)
T 4aw0_A 27 RKKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK 106 (311)
T ss_dssp CCCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCE
T ss_conf 88885236898898316484999999999998999999888887797899999999999986799898919999973898
Q ss_pred EEEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCC
Q ss_conf 99999614899988986119999999999999999999999999988932111258836864599199972066312455
Q 000535 92 LHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTE 171 (1437)
Q Consensus 92 LYLVMEYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG~VKLiDFGLAr~L~e 171 (1437)
+|||||||+||+|.++++.. +.++|..++.|+.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.+..
T Consensus 107 ~yivmEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 107 LYFGLSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp EEEEECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEEEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 99999648998999999874--9999999999999999999999988782687878996985898889987687502577
Q ss_pred CC--CCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 77--6654444897667714331079896641355999999998199999999983589997624899999999989999
Q 000535 172 AD--VNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERPPIPESLSPDITD 249 (1437)
Q Consensus 172 sd--~k~~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rppLPk~ISeELkD 249 (1437)
.. ....+.+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+....+.++... ...+|..+|+++++
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~-~~~~p~~~s~~~~d 263 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKL-EYDFPEKFFPKARD 263 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT-CCCCCTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHH
T ss_conf 87765436755680307998976899996898998999999997498998997999999999719-99999656999999
Q ss_pred HHHHHHHHCCCCCCCHHH------HHCCHHHHH
Q ss_conf 999982310069999999------950988999
Q 000535 250 FLRQCFKKDARQRPDAKT------LLSHPWIQN 276 (1437)
Q Consensus 250 LIkkLLskDPekRPSAeE------ILkHPWLQe 276 (1437)
||.+||.+||.+|||+.| +++||||++
T Consensus 264 li~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~ 296 (311)
T 4aw0_A 264 LVEKLLVLDATKRLGCEEMEGYGPLKAHPFFES 296 (311)
T ss_dssp HHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTT
T ss_pred HHHHHCCCCHHHCCCHHHHCCCHHHHCCCCCCC
T ss_conf 999976289757809679758779877987589
No 5
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=447.46 Aligned_cols=258 Identities=28% Similarity=0.476 Sum_probs=233.2
Q ss_pred CCCEEEEEEECCCCCEEEEEEEEC---CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf 985679848422595799999996---79909999993056348888999999999998179998214889998189699
Q 000535 17 DNKYMLGDEIGKGAYGRVYKGLDL---ENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHLH 93 (1437)
Q Consensus 17 gnRYkIlEkLGkGSFGtVYKArDk---kTGk~VAIKVIkke~lSeEeieeLlREIkILKrLkHPNIVKLlGVfeddd~LY 93 (1437)
.++|++.+.||+|+||.||+|++. .++..||+|++.+..........+.+|+.+|++++|||||++++++++++.+|
T Consensus 23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ 102 (304)
T 3ubd_A 23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY 102 (304)
T ss_dssp GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
T ss_conf 55658988972188839999998558878979999998157768478999999999998779979990999999899999
Q ss_pred EEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 99961489998898611999999999999999999999999998893211125883686459919997206631245577
Q 000535 94 IILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEAD 173 (1437)
Q Consensus 94 LVMEYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG~VKLiDFGLAr~L~esd 173 (1437)
+|||||+||+|.+++... +++++..++.|+.|++.||+|||++||+||||||+|||++.++.+||+|||+|+......
T Consensus 103 ivmEy~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 180 (304)
T 3ubd_A 103 LILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHE 180 (304)
T ss_dssp EEECCCTTCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----
T ss_pred EEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCEECCCCC
T ss_conf 999757998889999755--999999999999999999999997799588887899578689988762366343326887
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 66544448976677143310798966413559999999981999999999835899976248999999999899999999
Q 000535 174 VNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERPPIPESLSPDITDFLRQ 253 (1437)
Q Consensus 174 ~k~~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rppLPk~ISeELkDLIkk 253 (1437)
....+.+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+..+.+.++.. ...++|..+|+++.+||.+
T Consensus 181 ~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~-~~~~~p~~~s~~~~~li~~ 259 (304)
T 3ubd_A 181 KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILK-AKLGMPQFLSPEAQSLLRM 259 (304)
T ss_dssp CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH-CCCCCCTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHH
T ss_conf 630454418150799996568878777636119999999859899898499999999971-8999987689999999999
Q ss_pred HHHHCCCCCCC-----HHHHHCCHHHHHH
Q ss_conf 82310069999-----9999509889999
Q 000535 254 CFKKDARQRPD-----AKTLLSHPWIQNC 277 (1437)
Q Consensus 254 LLskDPekRPS-----AeEILkHPWLQel 277 (1437)
||++||.+||| ++|+++||||+..
T Consensus 260 ~L~~dP~~R~ta~~~~~~eil~Hp~f~~i 288 (304)
T 3ubd_A 260 LFKRNPANRLGAGPDGVEEIKRHSFFSTI 288 (304)
T ss_dssp HTCSSGGGSTTCSTTTHHHHHTSGGGTTC
T ss_pred HCCCCHHHCCCCCCCCHHHHHCCCCCCCC
T ss_conf 86469878799986789999769040378
No 6
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=441.63 Aligned_cols=262 Identities=23% Similarity=0.456 Sum_probs=232.9
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 56556423985679848422595799999996799099999930563488-88999999999998179998214889998
Q 000535 9 AFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQ-EDLNIIMQEIDLLKNLNHKNIVKYLGSLK 87 (1437)
Q Consensus 9 qFe~setLgnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSe-EeieeLlREIkILKrLkHPNIVKLlGVfe 87 (1437)
.+..+..+ ++|++.+.||+|+||.||+|++..++..||+|++.+..... .....+.+|+.++++++|||||+++++++
T Consensus 5 ~l~~G~~i-g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~ 83 (275)
T 3hyh_A 5 SLADGAHI-GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK 83 (275)
T ss_dssp ----------CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred CCCCCCEE-ECEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 78999893-38689999821768199999999999899999983788678789999999999998779989992999999
Q ss_pred ECCEEEEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCC
Q ss_conf 18969999961489998898611999999999999999999999999998893211125883686459919997206631
Q 000535 88 TRSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVAT 167 (1437)
Q Consensus 88 ddd~LYLVMEYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG~VKLiDFGLAr 167 (1437)
+++.+|+||||| +|+|.+++... +++++..++.|+.|++.||+|||++||+||||||+|||++.++.+||+|||+|+
T Consensus 84 ~~~~~~ivmEy~-~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~ 160 (275)
T 3hyh_A 84 SKDEIIMVIEYA-GNELFDYIVQR--DKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSN 160 (275)
T ss_dssp CSSEEEEEEECC-CEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC-
T ss_pred ECCEEEEEEECC-CCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf 899899999278-99789999874--999999999999999999999998893066687587688799989994547772
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 24557766544448976677143310798-96641355999999998199999999983589997624899999999989
Q 000535 168 KLTEADVNTHSVVGTPYWMAPEVIEMSGV-CAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERPPIPESLSPD 246 (1437)
Q Consensus 168 ~L~esd~k~~t~vGTp~YmAPEVLkg~~y-S~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rppLPk~ISeE 246 (1437)
...... ...+.+||+.|||||++.+..| +.++||||+||++|+|++|++||.+.+.. .+.+.+......+|..+|++
T Consensus 161 ~~~~~~-~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~-~~~~~i~~~~~~~p~~~s~~ 238 (275)
T 3hyh_A 161 IMTDGN-FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP-VLFKNISNGVYTLPKFLSPG 238 (275)
T ss_dssp ---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHTCCCCCTTSCHH
T ss_pred ECCCCC-CCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHCCCCCCCCCCCHH
T ss_conf 667887-4677028935277455068988898365687899999999887998998999-99999974999998779999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCHHHHH
Q ss_conf 999999982310069999999950988999
Q 000535 247 ITDFLRQCFKKDARQRPDAKTLLSHPWIQN 276 (1437)
Q Consensus 247 LkDLIkkLLskDPekRPSAeEILkHPWLQe 276 (1437)
+.+||.+||++||++|||+.|+++||||+.
T Consensus 239 ~~~li~~~L~~dP~~R~s~~eil~hpw~k~ 268 (275)
T 3hyh_A 239 AAGLIKRMLIVNPLNRISIHEIMQDDWFKV 268 (275)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred HHHHHHHHCCCCHHHCCCHHHHHCCCCCCC
T ss_conf 999999986589668919999971920065
No 7
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=440.88 Aligned_cols=260 Identities=29% Similarity=0.515 Sum_probs=230.5
Q ss_pred CCCCCCCCE-EEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--
Q ss_conf 564239856-79848422595799999996799099999930563488889999999999981799982148899981--
Q 000535 12 KSKTLDNKY-MLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKT-- 88 (1437)
Q Consensus 12 ~setLgnRY-kIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSeEeieeLlREIkILKrLkHPNIVKLlGVfed-- 88 (1437)
.+....++| ++.++||+|+||.||+|.+..++..||+|++..........+.+.+|+.+|++|+|||||++++++++
T Consensus 19 ~~~~~~gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~ 98 (290)
T 3fpq_A 19 VGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV 98 (290)
T ss_dssp EEECTTSSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 17678983689506970073859999998899909999998325479899999999999998679989991988996436
Q ss_pred --CCEEEEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCEEECC-CCCEEEEEC
Q ss_conf --896999996148999889861199999999999999999999999999889--321112588368645-991999720
Q 000535 89 --RSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQG--VIHRDIKGANILTTK-EGLVKLADF 163 (1437)
Q Consensus 89 --dd~LYLVMEYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkG--IVHRDIKPENILIss-DG~VKLiDF 163 (1437)
+..+|||||||+||+|.++++.. +++++..++.|+.||+.||.|||+++ |+||||||+|||++. ++.+||+||
T Consensus 99 ~~~~~~~lvmEy~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DF 176 (290)
T 3fpq_A 99 KGKKCIVLVTELMTSGTLKTYLKRF--KVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDL 176 (290)
T ss_dssp TTEEEEEEEEECCCSCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCT
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHEEEECCCCCEEEEEC
T ss_conf 7886899999487978999999866--99999999999999999999999779988716457426658889998899727
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC--CCCC
Q ss_conf 66312455776654444897667714331079896641355999999998199999999983589997624899--9999
Q 000535 164 GVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERP--PIPE 241 (1437)
Q Consensus 164 GLAr~L~esd~k~~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rp--pLPk 241 (1437)
|+|+..... ...+.+||+.|||||++.+ .|+.++|||||||++|+|++|++||.+......+.+.+..... .++.
T Consensus 177 Gla~~~~~~--~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~ 253 (290)
T 3fpq_A 177 GLATLKRAS--FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDK 253 (290)
T ss_dssp TGGGGCCTT--SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGG
T ss_pred CCCEECCCC--CCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 688767987--6677624802018978079-9992788887999999999788999999819999999973899877776
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHH
Q ss_conf 99989999999982310069999999950988999
Q 000535 242 SLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQN 276 (1437)
Q Consensus 242 ~ISeELkDLIkkLLskDPekRPSAeEILkHPWLQe 276 (1437)
.+++++.+||.+||.+||.+|||+.|+++||||++
T Consensus 254 ~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~ 288 (290)
T 3fpq_A 254 VAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE 288 (290)
T ss_dssp CCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCC
T ss_conf 57899999999976389657919999956904058
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=436.39 Aligned_cols=247 Identities=30% Similarity=0.491 Sum_probs=222.7
Q ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 98567984842259579999999679909999993056348888999999999998179998214889998189699999
Q 000535 17 DNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHLHIIL 96 (1437)
Q Consensus 17 gnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSeEeieeLlREIkILKrLkHPNIVKLlGVfeddd~LYLVM 96 (1437)
.+.|.+.++||+|+||.||+|+++.++..||+|++++.... .+|+.++++++|||||++++++++++.+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-------~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivm 129 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-------VEELVACAGLSSPRIVPLYGAVREGPWVNIFM 129 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-------THHHHTTTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH-------HHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 33517686851387809999998899989999997888869-------99999998579989993999999899999999
Q ss_pred EECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC-CEEEEECCCCCCCCCCCC-
Q ss_conf 614899988986119999999999999999999999999988932111258836864599-199972066312455776-
Q 000535 97 EYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEG-LVKLADFGVATKLTEADV- 174 (1437)
Q Consensus 97 EYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG-~VKLiDFGLAr~L~esd~- 174 (1437)
|||+||+|.++++.. +++++..++.|+.|++.||+|||+++|+||||||+|||++.++ .+||+|||+|+.+.....
T Consensus 130 Ey~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 130 ELLEGGSLGQLIKQM--GCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp CCCTTCBHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred ECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCC
T ss_conf 665998699999876--999999999999999999999998890426167788799589997999627877685678765
Q ss_pred ----CCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCHHHH
Q ss_conf ----654444897667714331079896641355999999998199999999983589997624899--99999998999
Q 000535 175 ----NTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERP--PIPESLSPDIT 248 (1437)
Q Consensus 175 ----k~~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rp--pLPk~ISeELk 248 (1437)
.....+||+.|||||++.+..|+.++||||+||++|+|++|++||.+....+...++.....+ .+++.+++++.
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~ 287 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTA 287 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHH
T ss_pred CCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCHHHH
T ss_conf 40221785455802008999889998908999999999999997869989989999999998089980025866799999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCH
Q ss_conf 999998231006999999995098
Q 000535 249 DFLRQCFKKDARQRPDAKTLLSHP 272 (1437)
Q Consensus 249 DLIkkLLskDPekRPSAeEILkHP 272 (1437)
+||.+||.+||.+|||+.|+++|.
T Consensus 288 ~li~~~L~~dP~~R~sa~el~~~l 311 (336)
T 4g3f_A 288 QAIQEGLRKEPVHRASAMELRRKV 311 (336)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred HHHHHHCCCCHHHCCCHHHHHHHH
T ss_conf 999997628976895999999999
No 9
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=1.00 E-value=1 Score=434.08 Aligned_cols=259 Identities=27% Similarity=0.434 Sum_probs=232.6
Q ss_pred CCCCCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf 42398567984842259579999999679909999993056348888999999999998179998214889998189699
Q 000535 14 KTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHLH 93 (1437)
Q Consensus 14 etLgnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSeEeieeLlREIkILKrLkHPNIVKLlGVfeddd~LY 93 (1437)
..+-++|++.+.||+|+||.||+|+++.++..||+|++.... ..+.+.+.+|+.+|+.|+|||||+++++++++..+|
T Consensus 153 ~~il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~ 230 (573)
T 3uto_A 153 DHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMV 230 (573)
T ss_dssp SCGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEE
T ss_pred CCCCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCC--HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
T ss_conf 868536189889961648499999998899899999991524--205999999999998689989894999999899889
Q ss_pred EEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC--CCEEEEECCCCCCCCC
Q ss_conf 99961489998898611999999999999999999999999998893211125883686459--9199972066312455
Q 000535 94 IILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKE--GLVKLADFGVATKLTE 171 (1437)
Q Consensus 94 LVMEYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssD--G~VKLiDFGLAr~L~e 171 (1437)
||||||+||+|++++... .+.+++..++.|++||+.||.|||+++|+||||||+|||++.+ +.+||+|||+|+.+..
T Consensus 231 iv~E~~~gg~L~~~i~~~-~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~ 309 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADE-HNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP 309 (573)
T ss_dssp EEEECCCCCBHHHHHTCT-TSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred EEEEECCCCCHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHCCCCCCCCCCEEEEECCCEEECCC
T ss_conf 998606999599999986-7999999999999999999999998892305687655121478889789940663068569
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC---CCCCCCCHHHH
Q ss_conf 776654444897667714331079896641355999999998199999999983589997624899---99999998999
Q 000535 172 ADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYELQPMPALFRIVQDERP---PIPESLSPDIT 248 (1437)
Q Consensus 172 sd~k~~t~vGTp~YmAPEVLkg~~yS~KSDIWSLGVILYELLTGkpPF~g~s~~eqL~KIIk~~rp---pLPk~ISeELk 248 (1437)
.. .....+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+..+.+.++...... ..+..+|++++
T Consensus 310 ~~-~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~ 388 (573)
T 3uto_A 310 KQ-SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGK 388 (573)
T ss_dssp TS-EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHH
T ss_pred CC-CEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 98-23234779451499996899989699999999999999978799798699999999984899989532468999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCHHHHH
Q ss_conf 9999982310069999999950988999
Q 000535 249 DFLRQCFKKDARQRPDAKTLLSHPWIQN 276 (1437)
Q Consensus 249 DLIkkLLskDPekRPSAeEILkHPWLQe 276 (1437)
+||.+||.+||.+||++.|+|+||||+.
T Consensus 389 dli~~~L~~dp~~R~t~~e~l~Hpw~~~ 416 (573)
T 3uto_A 389 DFIRKLLLADPNTRMTIHQALEHPWLTP 416 (573)
T ss_dssp HHHHTTSCSSGGGSCCHHHHHHSTTTSC
T ss_pred HHHHHHCCCCHHHCCCHHHHHCCCCCCC
T ss_conf 9999886489568929999953957487
No 10
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=433.64 Aligned_cols=259 Identities=26% Similarity=0.438 Sum_probs=226.2
Q ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCCCHH----HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEE
Q ss_conf 9856798484225957999999967990999999305634888----899999999999817999821488999818969
Q 000535 17 DNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQE----DLNIIMQEIDLLKNLNHKNIVKYLGSLKTRSHL 92 (1437)
Q Consensus 17 gnRYkIlEkLGkGSFGtVYKArDkkTGk~VAIKVIkke~lSeE----eieeLlREIkILKrLkHPNIVKLlGVfeddd~L 92 (1437)
-++|.+.+.||+|+||.||+|+++.++..||+|++.+...... .......++.+++.++|||||++++++++...+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred HHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCEE
T ss_conf 68928888983164839999999999989999997578825255689999999999999648999871799999989988
Q ss_pred EEEEEECCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 99996148999889861199999999999999999999999999889321112588368645991999720663124557
Q 000535 93 HIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEA 172 (1437)
Q Consensus 93 YLVMEYieGGSLsDLLKssk~GpLSEkeIlqILrQILsALeYLHSkGIVHRDIKPENILIssDG~VKLiDFGLAr~L~es 172 (1437)
|||||||+||+|.+++... +.|+|..++.|+.||+.||+|||++||+||||||+|||++.+|.+||+|||+|+.+...
T Consensus 268 ylVmEy~~GGdL~~~l~~~--~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~ 345 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQH--GVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 345 (689)
T ss_dssp EEEECCCCSCBHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred EEEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCEEECCCCEEEECCCC
T ss_conf 9999468998299999866--99999999999999999999999788541688668759808998896456556663789
Q ss_pred CCCCCCCCCCCCCCCHHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 76654444897667714331-07989664135599999999819999999998--3589997624899999999989999
Q 000535 173 DVNTHSVVGTPYWMAPEVIE-MSGVCAASDIWSVGCTVIELLTCVPPYYELQP--MPALFRIVQDERPPIPESLSPDITD 249 (1437)
Q Consensus 173 d~k~~t~vGTp~YmAPEVLk-g~~yS~KSDIWSLGVILYELLTGkpPF~g~s~--~eqL~KIIk~~rppLPk~ISeELkD 249 (1437)
...+.|||+.|||||++. +..|+.++|||||||++|+|++|++||.+... ...+.+.+......+|..+|+++++
T Consensus 346 --~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~d 423 (689)
T 3v5w_A 346 --KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRS 423 (689)
T ss_dssp --CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred --CCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf --877765786731889984799999599999999999999868799999986779999985057988887669999999
Q ss_pred HHHHHHHHCCCCCCC-----HHHHHCCHHHHHHHH
Q ss_conf 999982310069999-----999950988999999
Q 000535 250 FLRQCFKKDARQRPD-----AKTLLSHPWIQNCRR 279 (1437)
Q Consensus 250 LIkkLLskDPekRPS-----AeEILkHPWLQelrr 279 (1437)
||.+||.+||.+|++ +.|+++||||+...+
T Consensus 424 LI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW 458 (689)
T 3v5w_A 424 LLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDW 458 (689)
T ss_dssp HHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCH
T ss_conf 99997608986879998889999966915047898
Done!