Query 000537
Match_columns 1435
No_of_seqs 341 out of 2168
Neff 6.4
Searched_HMMs 46136
Date Mon Apr 1 18:25:54 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 1E-102 3E-107 885.3 34.3 576 658-1434 175-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 8E-87 1.7E-91 784.0 39.2 550 656-1435 313-901 (901)
3 KOG0385 Chromatin remodeling c 100.0 1.6E-84 3.4E-89 770.8 36.9 459 660-1415 159-623 (971)
4 KOG0387 Transcription-coupled 100.0 9E-83 1.9E-87 760.5 37.4 475 659-1435 197-699 (923)
5 KOG0392 SNF2 family DNA-depend 100.0 4.5E-82 9.7E-87 774.6 36.3 528 639-1434 949-1495(1549)
6 KOG0384 Chromodomain-helicase 100.0 3E-81 6.6E-86 772.6 32.7 600 512-1433 242-856 (1373)
7 KOG1001 Helicase-like transcri 100.0 6.8E-81 1.5E-85 773.8 30.1 556 651-1414 117-673 (674)
8 PLN03142 Probable chromatin-re 100.0 1.3E-78 2.8E-83 779.1 46.7 474 660-1434 162-641 (1033)
9 KOG0389 SNF2 family DNA-depend 100.0 1.2E-79 2.5E-84 732.6 32.9 495 667-1417 398-914 (941)
10 KOG0391 SNF2 family DNA-depend 100.0 6.7E-78 1.5E-82 726.7 32.5 581 659-1435 606-1429(1958)
11 KOG0388 SNF2 family DNA-depend 100.0 3.6E-75 7.8E-80 680.1 32.7 543 661-1417 560-1180(1185)
12 KOG0390 DNA repair protein, SN 100.0 2.5E-66 5.4E-71 638.7 39.0 493 662-1434 232-748 (776)
13 KOG0386 Chromatin remodeling c 100.0 4.5E-68 9.8E-73 645.7 18.7 460 658-1412 384-859 (1157)
14 KOG1015 Transcription regulato 100.0 6.7E-62 1.4E-66 581.0 31.9 596 666-1434 666-1317(1567)
15 COG0553 HepA Superfamily II DN 100.0 6.3E-61 1.4E-65 629.6 35.2 495 663-1434 333-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 1.9E-55 4E-60 517.1 26.9 583 666-1434 252-889 (1387)
17 KOG1000 Chromatin remodeling p 100.0 3.1E-52 6.6E-57 476.4 32.4 417 666-1411 196-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 2.2E-51 4.9E-56 526.9 34.8 420 665-1413 149-627 (956)
19 KOG0298 DEAD box-containing he 100.0 1.8E-50 3.9E-55 502.4 16.2 258 778-1080 419-691 (1394)
20 PF00176 SNF2_N: SNF2 family N 100.0 8.8E-43 1.9E-47 401.9 17.2 291 672-1080 1-299 (299)
21 KOG0383 Predicted helicase [Ge 100.0 2.9E-37 6.3E-42 379.1 8.3 398 667-1345 294-696 (696)
22 TIGR00603 rad25 DNA repair hel 100.0 6.7E-34 1.5E-38 355.3 36.7 115 1279-1399 495-615 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 4.7E-29 1E-33 324.9 40.1 125 1279-1408 364-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 1.4E-22 3E-27 237.4 34.7 459 667-1410 14-500 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 4.1E-22 9E-27 243.1 34.1 122 1279-1403 282-406 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 3.4E-22 7.3E-27 248.0 32.8 114 1279-1393 343-457 (501)
27 KOG1123 RNA polymerase II tran 99.8 5.6E-20 1.2E-24 212.2 23.4 112 1279-1396 542-658 (776)
28 PTZ00110 helicase; Provisional 99.8 1.4E-17 2.9E-22 208.7 30.8 109 1279-1391 376-484 (545)
29 PRK11776 ATP-dependent RNA hel 99.8 2.8E-17 6E-22 202.7 31.4 109 1279-1391 241-349 (460)
30 PRK11192 ATP-dependent RNA hel 99.8 3.6E-17 7.7E-22 200.2 28.6 104 1279-1384 244-347 (434)
31 TIGR00614 recQ_fam ATP-depende 99.8 6.5E-17 1.4E-21 199.8 27.8 105 1279-1385 225-329 (470)
32 PLN00206 DEAD-box ATP-dependen 99.8 1.1E-16 2.3E-21 199.9 29.5 107 1281-1391 368-475 (518)
33 PRK04837 ATP-dependent RNA hel 99.8 7.1E-17 1.5E-21 197.0 26.7 107 1280-1390 255-361 (423)
34 PRK10590 ATP-dependent RNA hel 99.8 1.2E-16 2.5E-21 196.9 28.3 108 1280-1391 245-352 (456)
35 KOG0354 DEAD-box like helicase 99.7 7E-16 1.5E-20 190.9 32.9 126 1279-1411 412-548 (746)
36 PRK04537 ATP-dependent RNA hel 99.7 2.8E-16 6E-21 197.8 29.0 108 1279-1390 256-363 (572)
37 PTZ00424 helicase 45; Provisio 99.7 2.8E-16 6.1E-21 190.1 27.5 108 1280-1391 267-374 (401)
38 PRK11057 ATP-dependent DNA hel 99.7 4E-16 8.8E-21 198.0 28.6 101 1279-1381 235-335 (607)
39 PRK01297 ATP-dependent RNA hel 99.7 4.2E-16 9.1E-21 193.0 28.1 109 1279-1391 334-442 (475)
40 PRK11634 ATP-dependent RNA hel 99.7 1.3E-15 2.9E-20 192.9 32.2 100 1280-1381 245-344 (629)
41 TIGR01389 recQ ATP-dependent D 99.7 6E-16 1.3E-20 196.4 28.1 102 1280-1383 224-325 (591)
42 PRK11448 hsdR type I restricti 99.7 1.4E-15 3.1E-20 201.4 28.7 105 1280-1387 698-814 (1123)
43 TIGR00643 recG ATP-dependent D 99.7 3E-15 6.6E-20 190.8 30.7 79 1303-1383 481-560 (630)
44 TIGR00580 mfd transcription-re 99.7 8.4E-15 1.8E-19 191.1 28.9 107 1280-1390 660-769 (926)
45 PRK10689 transcription-repair 99.7 8.8E-15 1.9E-19 194.6 28.7 101 1280-1382 809-912 (1147)
46 PRK10917 ATP-dependent DNA hel 99.7 1.7E-14 3.6E-19 185.3 30.3 76 1304-1381 505-581 (681)
47 PLN03137 ATP-dependent DNA hel 99.6 2.5E-14 5.5E-19 184.3 26.7 104 1280-1385 680-783 (1195)
48 KOG0331 ATP-dependent RNA heli 99.6 2.6E-14 5.6E-19 172.6 24.6 101 1279-1381 340-440 (519)
49 TIGR03817 DECH_helic helicase/ 99.6 3E-13 6.6E-18 174.8 29.0 115 1280-1398 271-393 (742)
50 PRK13767 ATP-dependent helicas 99.6 6.4E-13 1.4E-17 174.9 28.9 104 1280-1385 284-394 (876)
51 PRK02362 ski2-like helicase; P 99.6 6.7E-13 1.4E-17 172.7 28.8 81 1306-1388 305-394 (737)
52 cd00079 HELICc Helicase superf 99.5 9.1E-14 2E-18 140.4 11.4 105 1279-1385 27-131 (131)
53 TIGR00348 hsdR type I site-spe 99.5 6.2E-12 1.3E-16 161.2 30.8 108 1280-1389 514-649 (667)
54 PRK01172 ski2-like helicase; P 99.5 3.7E-12 8E-17 164.4 28.5 72 1307-1381 288-368 (674)
55 COG0513 SrmB Superfamily II DN 99.5 8.7E-12 1.9E-16 155.5 30.5 117 1281-1402 274-390 (513)
56 TIGR01587 cas3_core CRISPR-ass 99.5 5.7E-12 1.2E-16 150.5 26.5 108 1279-1391 221-338 (358)
57 PRK00254 ski2-like helicase; P 99.5 7.7E-12 1.7E-16 162.4 28.2 84 1306-1391 297-388 (720)
58 PF04851 ResIII: Type III rest 99.4 1.3E-12 2.9E-17 139.6 10.4 167 667-947 2-183 (184)
59 PF00271 Helicase_C: Helicase 99.4 5.8E-13 1.3E-17 123.8 6.4 78 1298-1377 1-78 (78)
60 TIGR03714 secA2 accessory Sec 99.4 1E-11 2.3E-16 157.1 18.7 98 1279-1381 423-529 (762)
61 PRK09200 preprotein translocas 99.4 1.4E-10 3.1E-15 148.2 28.6 113 1279-1400 427-547 (790)
62 KOG0330 ATP-dependent RNA heli 99.4 3.5E-11 7.7E-16 137.8 20.4 123 1279-1405 299-423 (476)
63 COG1200 RecG RecG-like helicas 99.3 1.2E-10 2.7E-15 143.2 25.1 73 1304-1378 507-580 (677)
64 PRK12898 secA preprotein trans 99.3 1.8E-10 4E-15 144.5 26.9 113 1279-1400 472-592 (656)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.3 5.1E-10 1.1E-14 143.3 31.0 104 1279-1387 271-390 (844)
66 KOG0328 Predicted ATP-dependen 99.3 5.4E-11 1.2E-15 131.1 18.7 109 1281-1393 267-375 (400)
67 smart00487 DEXDc DEAD-like hel 99.3 7.7E-12 1.7E-16 133.8 11.9 164 667-952 7-176 (201)
68 TIGR00963 secA preprotein tran 99.3 1.2E-11 2.5E-16 155.9 14.2 101 1279-1383 404-511 (745)
69 PRK05580 primosome assembly pr 99.3 3.8E-10 8.2E-15 145.1 26.7 95 1293-1389 439-549 (679)
70 COG4096 HsdR Type I site-speci 99.3 2E-10 4.3E-15 142.8 22.6 107 1280-1388 426-545 (875)
71 KOG0333 U5 snRNP-like RNA heli 99.3 2.1E-10 4.5E-15 135.3 21.2 108 1280-1391 517-624 (673)
72 PHA02653 RNA helicase NPH-II; 99.3 2.1E-09 4.5E-14 136.9 31.4 110 1280-1395 395-518 (675)
73 KOG0350 DEAD-box ATP-dependent 99.2 3.5E-10 7.6E-15 133.0 20.9 109 1279-1391 428-540 (620)
74 smart00490 HELICc helicase sup 99.2 1.5E-11 3.3E-16 113.7 7.3 81 1295-1377 2-82 (82)
75 cd00046 DEXDc DEAD-like helica 99.2 5.5E-11 1.2E-15 119.7 12.1 137 692-946 2-144 (144)
76 PRK09401 reverse gyrase; Revie 99.2 8.7E-10 1.9E-14 147.9 26.4 90 1281-1376 329-431 (1176)
77 TIGR03158 cas3_cyano CRISPR-as 99.2 1E-09 2.2E-14 131.5 24.3 85 1279-1374 271-357 (357)
78 PRK09751 putative ATP-dependen 99.1 4E-09 8.7E-14 142.3 26.4 95 1280-1376 244-371 (1490)
79 KOG4284 DEAD box protein [Tran 99.1 6.2E-10 1.3E-14 133.4 16.3 108 1280-1390 272-379 (980)
80 KOG0335 ATP-dependent RNA heli 99.1 4.5E-09 9.7E-14 126.0 23.6 105 1279-1385 336-440 (482)
81 COG1201 Lhr Lhr-like helicases 99.1 1.1E-08 2.3E-13 130.8 27.0 120 1281-1406 254-375 (814)
82 KOG0336 ATP-dependent RNA heli 99.1 3.1E-09 6.6E-14 122.1 19.5 110 1279-1391 464-573 (629)
83 TIGR01054 rgy reverse gyrase. 99.1 7.9E-09 1.7E-13 139.0 25.1 75 1281-1360 327-408 (1171)
84 TIGR00595 priA primosomal prot 99.1 1.5E-08 3.3E-13 126.3 25.7 96 1293-1390 271-382 (505)
85 TIGR01970 DEAH_box_HrpB ATP-de 99.1 1.9E-08 4.1E-13 131.0 26.1 107 1281-1392 210-337 (819)
86 COG1205 Distinct helicase fami 99.1 9.3E-09 2E-13 134.3 23.3 118 1279-1400 305-431 (851)
87 KOG0343 RNA Helicase [RNA proc 99.0 1.4E-08 3.1E-13 120.6 22.2 121 1280-1405 313-435 (758)
88 KOG0342 ATP-dependent RNA heli 99.0 1.5E-08 3.2E-13 119.9 22.0 99 1281-1381 331-429 (543)
89 COG0514 RecQ Superfamily II DN 99.0 2.2E-08 4.8E-13 124.0 24.1 103 1280-1384 230-332 (590)
90 PRK13104 secA preprotein trans 99.0 1.5E-08 3.3E-13 129.8 22.2 113 1279-1400 443-593 (896)
91 PRK12906 secA preprotein trans 99.0 1.2E-08 2.7E-13 130.0 20.3 100 1279-1382 439-546 (796)
92 KOG0348 ATP-dependent RNA heli 99.0 1.5E-08 3.2E-13 120.3 18.3 98 1304-1407 471-568 (708)
93 PRK14701 reverse gyrase; Provi 99.0 6.5E-08 1.4E-12 132.9 27.4 94 1280-1379 330-446 (1638)
94 PRK11664 ATP-dependent RNA hel 99.0 1.1E-07 2.3E-12 124.3 27.7 109 1280-1393 212-341 (812)
95 KOG0339 ATP-dependent RNA heli 99.0 7.4E-08 1.6E-12 113.6 23.0 111 1280-1394 468-578 (731)
96 COG1204 Superfamily II helicas 98.9 2.9E-08 6.3E-13 128.1 21.6 103 668-839 31-134 (766)
97 PRK09694 helicase Cas3; Provis 98.9 1.2E-07 2.5E-12 124.0 25.6 98 1279-1379 559-665 (878)
98 COG1197 Mfd Transcription-repa 98.9 2.5E-07 5.3E-12 120.3 27.2 97 1290-1390 813-912 (1139)
99 PRK12904 preprotein translocas 98.9 7.3E-08 1.6E-12 123.6 21.8 112 1279-1399 429-578 (830)
100 KOG0338 ATP-dependent RNA heli 98.8 5.4E-08 1.2E-12 115.0 16.6 98 1280-1379 426-523 (691)
101 PRK13107 preprotein translocas 98.8 2.3E-07 4.9E-12 119.0 22.9 113 1279-1400 448-597 (908)
102 COG4889 Predicted helicase [Ge 98.8 3.9E-08 8.4E-13 121.2 14.7 76 1304-1380 499-576 (1518)
103 COG1202 Superfamily II helicas 98.8 2.7E-07 5.8E-12 110.5 21.0 119 1280-1401 440-572 (830)
104 cd00268 DEADc DEAD-box helicas 98.8 4.7E-08 1E-12 107.3 12.9 109 668-840 21-132 (203)
105 PRK12900 secA preprotein trans 98.7 1.2E-05 2.6E-10 103.9 33.0 114 1279-1401 597-718 (1025)
106 KOG0952 DNA/RNA helicase MER3/ 98.7 9.5E-07 2.1E-11 112.2 21.3 83 1310-1394 402-494 (1230)
107 PF13872 AAA_34: P-loop contai 98.6 6.4E-07 1.4E-11 102.8 15.8 247 668-1038 37-302 (303)
108 PRK11131 ATP-dependent RNA hel 98.6 5.6E-06 1.2E-10 110.9 26.3 108 1280-1394 286-414 (1294)
109 TIGR01967 DEAH_box_HrpA ATP-de 98.6 4.5E-06 9.7E-11 112.1 25.2 109 1280-1395 279-408 (1283)
110 KOG0332 ATP-dependent RNA heli 98.6 3.9E-07 8.4E-12 104.7 12.6 110 1281-1394 331-447 (477)
111 PF00270 DEAD: DEAD/DEAH box h 98.6 2.2E-07 4.8E-12 98.4 9.9 158 671-953 2-168 (169)
112 KOG0341 DEAD-box protein abstr 98.5 2.8E-07 6E-12 105.7 9.7 125 1279-1407 420-548 (610)
113 KOG0334 RNA helicase [RNA proc 98.5 4.2E-06 9.2E-11 107.3 19.1 108 1279-1390 612-719 (997)
114 COG1203 CRISPR-associated heli 98.4 2.5E-05 5.3E-10 102.2 25.3 126 1279-1408 439-569 (733)
115 TIGR00631 uvrb excinuclease AB 98.4 1.7E-06 3.6E-11 110.9 13.9 117 1279-1400 441-564 (655)
116 PRK12326 preprotein translocas 98.4 3.1E-05 6.7E-10 97.8 23.5 114 1279-1401 426-554 (764)
117 KOG1513 Nuclear helicase MOP-3 98.4 1.9E-05 4.2E-10 97.4 20.5 85 1323-1409 850-942 (1300)
118 PF11496 HDA2-3: Class II hist 98.4 1.1E-05 2.5E-10 94.0 18.0 123 1279-1402 116-256 (297)
119 PRK05298 excinuclease ABC subu 98.3 4.1E-06 8.8E-11 107.9 13.6 107 1279-1390 445-556 (652)
120 COG0556 UvrB Helicase subunit 98.3 0.0023 4.9E-08 77.7 34.5 123 1279-1404 445-572 (663)
121 KOG0326 ATP-dependent RNA heli 98.2 8.2E-07 1.8E-11 100.1 4.4 98 1281-1380 323-420 (459)
122 PF13871 Helicase_C_4: Helicas 98.2 2E-06 4.4E-11 98.4 7.2 94 1321-1416 52-153 (278)
123 COG4098 comFA Superfamily II D 98.2 0.0016 3.5E-08 75.2 29.1 95 1279-1378 304-403 (441)
124 PRK12899 secA preprotein trans 98.2 0.00013 2.8E-09 94.5 22.2 112 1279-1400 567-687 (970)
125 KOG0345 ATP-dependent RNA heli 98.1 1.2E-05 2.5E-10 95.3 11.1 104 1279-1384 254-359 (567)
126 KOG0340 ATP-dependent RNA heli 98.1 1.1E-05 2.5E-10 92.5 10.0 101 1279-1381 253-353 (442)
127 PRK13103 secA preprotein trans 98.0 0.00017 3.7E-09 93.4 19.2 102 1279-1384 448-586 (913)
128 TIGR00596 rad1 DNA repair prot 98.0 0.00045 9.7E-09 90.3 23.3 52 1352-1406 478-529 (814)
129 KOG0344 ATP-dependent RNA heli 98.0 3.3E-05 7.1E-10 94.1 11.6 98 1282-1381 389-487 (593)
130 KOG0327 Translation initiation 97.9 2.1E-05 4.6E-10 91.6 7.4 107 1281-1391 264-370 (397)
131 PRK12903 secA preprotein trans 97.8 0.0011 2.4E-08 85.3 21.9 112 1279-1399 425-544 (925)
132 KOG0947 Cytoplasmic exosomal R 97.7 0.00066 1.4E-08 86.4 16.5 79 1310-1392 636-723 (1248)
133 KOG0951 RNA helicase BRR2, DEA 97.6 0.0038 8.3E-08 81.6 21.6 71 1305-1378 608-689 (1674)
134 COG1110 Reverse gyrase [DNA re 97.5 0.0017 3.6E-08 83.8 17.1 75 1280-1360 335-416 (1187)
135 COG1198 PriA Primosomal protei 97.5 0.0045 9.8E-08 79.8 20.6 96 1294-1391 494-605 (730)
136 KOG0347 RNA helicase [RNA proc 97.5 0.00014 3E-09 87.6 5.8 98 1279-1378 462-559 (731)
137 KOG0349 Putative DEAD-box RNA 97.4 0.00037 8E-09 81.6 7.8 95 1279-1375 504-601 (725)
138 KOG0823 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 79.8 2.1 55 1113-1169 45-101 (230)
139 KOG0351 ATP-dependent DNA heli 97.2 0.0008 1.7E-08 88.7 8.3 106 1279-1386 484-589 (941)
140 KOG0953 Mitochondrial RNA heli 97.1 0.0015 3.3E-08 79.3 9.4 106 1279-1388 357-474 (700)
141 KOG0949 Predicted helicase, DE 97.1 0.023 4.9E-07 73.2 19.4 70 1310-1381 968-1038(1330)
142 PRK12901 secA preprotein trans 97.1 0.11 2.3E-06 68.8 25.8 112 1279-1399 627-746 (1112)
143 PF07652 Flavi_DEAD: Flaviviru 97.0 0.0049 1.1E-07 64.3 11.0 42 905-947 92-137 (148)
144 KOG0948 Nuclear exosomal RNA h 97.0 0.024 5.3E-07 71.2 18.6 82 1311-1395 453-542 (1041)
145 KOG0346 RNA helicase [RNA proc 97.0 0.0014 3.1E-08 77.6 7.8 109 1280-1391 268-410 (569)
146 PLN03208 E3 ubiquitin-protein 97.0 0.00036 7.7E-09 75.6 2.4 52 1115-1168 18-84 (193)
147 PRK15483 type III restriction- 97.0 0.0055 1.2E-07 80.7 13.3 37 911-948 204-240 (986)
148 CHL00122 secA preprotein trans 96.9 0.058 1.2E-06 70.5 21.0 66 1279-1347 423-489 (870)
149 PF13923 zf-C3HC4_2: Zinc fing 96.9 0.00044 9.5E-09 56.1 1.4 37 1118-1155 1-38 (39)
150 smart00504 Ubox Modified RING 96.7 0.00068 1.5E-08 60.6 1.6 45 1117-1164 3-47 (63)
151 COG0610 Type I site-specific r 96.7 0.0082 1.8E-07 80.8 12.1 67 1320-1388 581-650 (962)
152 KOG0978 E3 ubiquitin ligase in 96.7 0.00064 1.4E-08 85.8 1.2 48 1117-1166 645-692 (698)
153 PF15227 zf-C3HC4_4: zinc fing 96.6 0.001 2.2E-08 55.1 1.9 33 1118-1150 1-33 (42)
154 KOG0317 Predicted E3 ubiquitin 96.6 0.00076 1.6E-08 76.3 1.5 49 1116-1167 240-288 (293)
155 KOG0320 Predicted E3 ubiquitin 96.6 0.00082 1.8E-08 71.0 1.3 50 1114-1166 130-181 (187)
156 KOG0337 ATP-dependent RNA heli 96.3 0.0079 1.7E-07 71.3 7.0 106 1280-1389 261-366 (529)
157 PF13086 AAA_11: AAA domain; P 96.2 0.082 1.8E-06 58.6 14.7 40 668-714 1-41 (236)
158 PF00097 zf-C3HC4: Zinc finger 96.1 0.003 6.6E-08 51.6 1.7 37 1118-1154 1-39 (41)
159 KOG0352 ATP-dependent DNA heli 96.0 0.014 3.1E-07 69.0 7.2 103 1281-1385 256-358 (641)
160 COG4581 Superfamily II RNA hel 95.9 0.034 7.4E-07 73.8 11.0 169 660-961 111-283 (1041)
161 PHA02929 N1R/p28-like protein; 95.6 0.011 2.3E-07 66.9 4.1 46 1115-1163 174-227 (238)
162 PF13920 zf-C3HC4_3: Zinc fing 95.5 0.0078 1.7E-07 51.6 2.2 44 1116-1162 3-47 (50)
163 PF13445 zf-RING_UBOX: RING-ty 95.5 0.0048 1E-07 51.3 0.6 30 1118-1148 1-34 (43)
164 TIGR00599 rad18 DNA repair pro 95.4 0.0079 1.7E-07 72.6 2.4 48 1115-1165 26-73 (397)
165 KOG1802 RNA helicase nonsense 95.4 0.07 1.5E-06 66.5 10.2 81 668-820 410-491 (935)
166 KOG2164 Predicted E3 ubiquitin 95.3 0.0083 1.8E-07 72.8 2.2 53 1115-1167 186-240 (513)
167 smart00184 RING Ring finger. E 95.2 0.01 2.2E-07 46.7 1.8 37 1118-1154 1-37 (39)
168 TIGR01407 dinG_rel DnaQ family 95.0 0.14 3E-06 68.9 12.5 101 1279-1384 673-809 (850)
169 COG5574 PEX10 RING-finger-cont 95.0 0.0092 2E-07 67.0 1.2 49 1116-1166 216-265 (271)
170 smart00489 DEXDc3 DEAD-like he 94.5 0.2 4.3E-06 58.9 10.6 41 669-712 9-49 (289)
171 smart00488 DEXDc2 DEAD-like he 94.5 0.2 4.3E-06 58.9 10.6 41 669-712 9-49 (289)
172 PF04564 U-box: U-box domain; 94.2 0.022 4.8E-07 52.9 1.5 40 1116-1155 5-44 (73)
173 cd00162 RING RING-finger (Real 94.2 0.027 5.9E-07 45.8 1.9 39 1117-1155 1-40 (45)
174 PF02562 PhoH: PhoH-like prote 94.1 0.13 2.8E-06 57.3 7.5 43 908-952 119-161 (205)
175 TIGR03117 cas_csf4 CRISPR-asso 93.9 0.32 6.8E-06 62.8 11.4 81 1279-1364 470-564 (636)
176 PF14634 zf-RING_5: zinc-RING 93.5 0.042 9.2E-07 45.8 1.9 37 1118-1155 2-41 (44)
177 PHA02926 zinc finger-like prot 93.4 0.058 1.3E-06 59.4 3.2 47 1115-1163 170-230 (242)
178 TIGR00570 cdk7 CDK-activating 93.3 0.053 1.2E-06 63.2 2.9 49 1116-1166 4-57 (309)
179 PRK10536 hypothetical protein; 93.3 0.38 8.3E-06 55.3 9.7 40 910-951 178-217 (262)
180 PF13639 zf-RING_2: Ring finge 93.1 0.035 7.5E-07 46.2 0.7 38 1117-1155 2-42 (44)
181 PF13307 Helicase_C_2: Helicas 92.8 0.48 1E-05 51.1 9.2 99 1279-1383 8-144 (167)
182 PF11789 zf-Nse: Zinc-finger o 92.7 0.051 1.1E-06 48.1 1.2 45 1115-1159 11-57 (57)
183 PF14835 zf-RING_6: zf-RING of 92.6 0.088 1.9E-06 47.3 2.5 43 1115-1162 7-50 (65)
184 KOG0287 Postreplication repair 92.5 0.033 7.1E-07 64.0 -0.3 46 1116-1164 24-69 (442)
185 TIGR00376 DNA helicase, putati 92.2 1.7 3.6E-05 56.8 14.5 41 667-713 156-196 (637)
186 COG5432 RAD18 RING-finger-cont 91.9 0.069 1.5E-06 60.3 1.2 50 1115-1164 25-76 (391)
187 COG0653 SecA Preprotein transl 91.5 13 0.00028 49.2 21.1 95 1279-1377 428-533 (822)
188 COG1199 DinG Rad3-related DNA 91.4 0.86 1.9E-05 59.6 10.8 102 1279-1384 478-612 (654)
189 TIGR01407 dinG_rel DnaQ family 91.2 0.69 1.5E-05 62.4 9.8 42 667-711 244-285 (850)
190 COG3587 Restriction endonuclea 91.1 0.5 1.1E-05 61.1 7.8 35 911-946 208-242 (985)
191 PRK08074 bifunctional ATP-depe 90.7 1.3 2.7E-05 60.4 11.6 104 1279-1384 751-888 (928)
192 KOG0824 Predicted E3 ubiquitin 90.0 0.21 4.5E-06 57.3 2.8 56 1115-1172 7-62 (324)
193 KOG1132 Helicase of the DEAD s 89.6 1.4 3E-05 57.5 9.8 84 1279-1364 560-659 (945)
194 KOG0353 ATP-dependent DNA heli 89.0 0.49 1.1E-05 55.5 4.9 89 1279-1369 316-404 (695)
195 PF13604 AAA_30: AAA domain; P 88.5 3 6.5E-05 46.2 10.5 39 668-711 1-39 (196)
196 PRK07246 bifunctional ATP-depe 88.3 3 6.4E-05 56.0 12.2 100 1279-1383 646-777 (820)
197 KOG1785 Tyrosine kinase negati 88.3 0.27 5.9E-06 57.8 2.2 52 1107-1158 361-413 (563)
198 smart00492 HELICc3 helicase su 88.3 2.2 4.8E-05 44.9 8.8 71 1292-1364 3-83 (141)
199 KOG0311 Predicted E3 ubiquitin 87.8 0.065 1.4E-06 62.5 -3.1 47 1116-1164 44-91 (381)
200 KOG1803 DNA helicase [Replicat 87.5 1.7 3.7E-05 54.7 8.5 44 664-713 181-224 (649)
201 KOG4172 Predicted E3 ubiquitin 87.4 0.18 4E-06 43.5 0.1 48 1113-1162 5-53 (62)
202 PRK14873 primosome assembly pr 87.4 1.4 3E-05 57.5 8.1 56 781-839 190-252 (665)
203 TIGR00604 rad3 DNA repair heli 86.8 2.2 4.8E-05 56.4 9.7 103 1279-1382 521-667 (705)
204 PRK12902 secA preprotein trans 86.7 2.9 6.2E-05 55.4 10.2 57 780-840 127-187 (939)
205 PRK11747 dinG ATP-dependent DN 86.2 4.3 9.2E-05 53.7 11.7 96 1282-1382 536-667 (697)
206 COG5222 Uncharacterized conser 86.1 0.32 7E-06 55.2 1.2 43 1116-1160 275-318 (427)
207 KOG2879 Predicted E3 ubiquitin 86.0 0.46 1E-05 53.9 2.3 46 1113-1160 237-284 (298)
208 PRK10875 recD exonuclease V su 85.8 5.2 0.00011 51.9 12.0 42 907-950 264-305 (615)
209 COG5220 TFB3 Cdk activating ki 85.6 0.25 5.3E-06 54.6 -0.0 50 1116-1165 11-66 (314)
210 KOG4150 Predicted ATP-dependen 85.4 3.7 7.9E-05 51.0 9.5 98 1279-1378 524-629 (1034)
211 TIGR01448 recD_rel helicase, p 85.1 6.5 0.00014 52.2 12.6 41 908-950 416-456 (720)
212 TIGR01447 recD exodeoxyribonuc 84.5 6 0.00013 51.2 11.6 41 908-950 259-299 (586)
213 KOG0347 RNA helicase [RNA proc 84.2 1.6 3.5E-05 54.1 5.9 57 782-839 266-325 (731)
214 PF07517 SecA_DEAD: SecA DEAD- 84.2 2.9 6.2E-05 48.6 7.8 56 781-840 120-179 (266)
215 COG5152 Uncharacterized conser 83.5 0.45 9.8E-06 51.3 0.8 36 1115-1150 196-231 (259)
216 KOG0353 ATP-dependent DNA heli 82.9 3.8 8.2E-05 48.4 7.9 55 904-958 211-272 (695)
217 KOG0345 ATP-dependent RNA heli 82.8 7.4 0.00016 47.8 10.5 111 781-946 81-198 (567)
218 KOG2177 Predicted E3 ubiquitin 82.7 0.5 1.1E-05 54.4 0.8 43 1114-1159 12-54 (386)
219 COG5540 RING-finger-containing 82.5 0.51 1.1E-05 54.1 0.8 45 1116-1162 324-371 (374)
220 PF06862 DUF1253: Protein of u 82.4 11 0.00023 47.0 12.0 125 1279-1404 299-430 (442)
221 PF09848 DUF2075: Uncharacteri 80.7 3.6 7.7E-05 49.8 7.2 19 695-713 6-24 (352)
222 smart00491 HELICc2 helicase su 80.6 4.7 0.0001 42.5 7.1 70 1292-1363 3-83 (142)
223 PRK07246 bifunctional ATP-depe 79.9 8.6 0.00019 51.8 10.9 40 667-709 244-283 (820)
224 PRK08074 bifunctional ATP-depe 79.4 9.7 0.00021 52.1 11.3 39 667-708 256-294 (928)
225 KOG1805 DNA replication helica 78.4 13 0.00029 49.4 11.3 40 668-713 669-708 (1100)
226 KOG2660 Locus-specific chromos 77.2 0.74 1.6E-05 53.8 -0.1 45 1116-1163 16-61 (331)
227 PF05876 Terminase_GpA: Phage 76.0 9.2 0.0002 49.2 9.2 49 660-713 8-56 (557)
228 PF06733 DEAD_2: DEAD_2; Inte 75.7 1.6 3.5E-05 47.2 2.0 17 824-840 116-132 (174)
229 PF02399 Herpes_ori_bp: Origin 75.6 16 0.00035 48.2 11.1 38 909-946 143-190 (824)
230 PF02399 Herpes_ori_bp: Origin 74.4 12 0.00026 49.4 9.4 98 1279-1385 281-384 (824)
231 KOG0340 ATP-dependent RNA heli 74.3 27 0.00059 41.8 11.4 58 782-840 78-138 (442)
232 KOG0922 DEAH-box RNA helicase 72.4 14 0.0003 47.4 9.1 113 1279-1394 257-393 (674)
233 KOG0344 ATP-dependent RNA heli 72.1 3 6.6E-05 52.3 3.3 35 670-711 160-194 (593)
234 PF12678 zf-rbx1: RING-H2 zinc 72.1 2.3 4.9E-05 39.7 1.8 39 1116-1155 20-71 (73)
235 KOG4159 Predicted E3 ubiquitin 71.7 1.9 4E-05 52.7 1.4 46 1115-1163 84-129 (398)
236 KOG0329 ATP-dependent RNA heli 71.3 2.3 5.1E-05 48.0 1.9 46 1336-1381 302-347 (387)
237 KOG1814 Predicted E3 ubiquitin 70.6 2.7 6E-05 50.4 2.4 58 1108-1165 177-244 (445)
238 KOG0802 E3 ubiquitin ligase [P 69.8 1.7 3.8E-05 55.6 0.6 52 1114-1168 290-346 (543)
239 PHA02533 17 large terminase pr 67.7 44 0.00096 42.9 12.4 41 665-712 56-96 (534)
240 KOG4692 Predicted E3 ubiquitin 67.7 2.5 5.4E-05 49.4 1.2 34 1116-1149 423-456 (489)
241 KOG0922 DEAH-box RNA helicase 67.5 28 0.00061 44.8 10.3 46 908-957 163-216 (674)
242 KOG0297 TNF receptor-associate 66.9 3 6.4E-05 51.3 1.8 44 1116-1162 22-66 (391)
243 KOG3800 Predicted E3 ubiquitin 66.6 3.2 6.8E-05 47.9 1.8 48 1117-1166 2-54 (300)
244 KOG0926 DEAH-box RNA helicase 66.3 9.5 0.00021 49.5 5.9 135 694-945 275-423 (1172)
245 COG1643 HrpA HrpA-like helicas 66.1 44 0.00095 45.0 12.2 20 693-712 68-87 (845)
246 KOG1813 Predicted E3 ubiquitin 66.0 3.1 6.7E-05 48.1 1.5 43 1116-1161 242-284 (313)
247 PF13401 AAA_22: AAA domain; P 65.3 4.9 0.00011 40.5 2.8 35 910-946 89-125 (131)
248 PF14447 Prok-RING_4: Prokaryo 64.7 3.7 8E-05 36.1 1.4 45 1115-1164 7-51 (55)
249 PF12340 DUF3638: Protein of u 63.1 20 0.00044 40.8 7.3 43 667-713 22-64 (229)
250 KOG4628 Predicted E3 ubiquitin 63.0 4.1 8.8E-05 48.8 1.9 49 1116-1166 230-281 (348)
251 PRK07003 DNA polymerase III su 61.7 86 0.0019 41.8 13.3 44 1373-1416 751-794 (830)
252 KOG1133 Helicase of the DEAD s 55.4 4.3 9.3E-05 51.9 0.3 81 1280-1362 629-721 (821)
253 TIGR02881 spore_V_K stage V sp 55.1 31 0.00067 39.9 7.3 19 693-711 45-63 (261)
254 TIGR00631 uvrb excinuclease AB 54.3 49 0.0011 43.6 9.7 67 672-804 13-80 (655)
255 TIGR02562 cas3_yersinia CRISPR 52.9 2.1E+02 0.0045 39.6 14.9 41 668-708 408-449 (1110)
256 PRK11747 dinG ATP-dependent DN 51.4 10 0.00022 50.3 2.8 41 668-708 25-67 (697)
257 KOG4739 Uncharacterized protei 51.0 7.2 0.00016 44.2 1.2 45 1116-1165 4-50 (233)
258 TIGR03117 cas_csf4 CRISPR-asso 50.3 1.1E+02 0.0023 40.3 11.6 40 780-819 47-89 (636)
259 KOG0924 mRNA splicing factor A 49.8 26 0.00056 45.0 5.7 105 1292-1399 579-705 (1042)
260 KOG0950 DNA polymerase theta/e 48.8 24 0.00052 47.1 5.4 106 1307-1417 525-636 (1008)
261 KOG0828 Predicted E3 ubiquitin 47.7 7.8 0.00017 47.5 0.8 46 1115-1162 571-633 (636)
262 KOG0951 RNA helicase BRR2, DEA 46.9 91 0.002 43.2 10.1 55 780-839 1187-1246(1674)
263 PRK14960 DNA polymerase III su 46.3 2.1E+02 0.0045 37.9 13.1 39 672-713 22-60 (702)
264 KOG0329 ATP-dependent RNA heli 46.1 47 0.001 38.1 6.5 60 781-840 112-174 (387)
265 KOG3039 Uncharacterized conser 45.7 9.7 0.00021 42.9 1.1 32 1116-1147 44-75 (303)
266 KOG0920 ATP-dependent RNA heli 45.0 38 0.00083 45.7 6.5 110 1279-1394 412-547 (924)
267 TIGR03420 DnaA_homol_Hda DnaA 45.0 1.5E+02 0.0033 32.9 10.7 22 691-712 39-60 (226)
268 KOG0826 Predicted E3 ubiquitin 44.8 9.1 0.0002 45.0 0.8 47 1114-1161 299-346 (357)
269 PHA02544 44 clamp loader, smal 44.6 2.3E+02 0.0051 33.4 12.7 40 669-712 25-65 (316)
270 PRK14958 DNA polymerase III su 43.0 2.6E+02 0.0057 35.8 13.4 49 908-958 119-170 (509)
271 KOG0337 ATP-dependent RNA heli 42.2 37 0.0008 41.6 5.2 108 781-946 92-205 (529)
272 PRK12902 secA preprotein trans 42.1 1.8E+02 0.0038 39.5 11.7 47 1279-1325 438-485 (939)
273 KOG1039 Predicted E3 ubiquitin 41.7 12 0.00026 45.0 1.2 34 1115-1148 161-202 (344)
274 KOG0346 RNA helicase [RNA proc 41.4 42 0.00091 41.3 5.5 60 782-841 96-159 (569)
275 TIGR02880 cbbX_cfxQ probable R 40.9 51 0.0011 38.8 6.2 21 692-712 60-80 (284)
276 COG1643 HrpA HrpA-like helicas 40.9 68 0.0015 43.3 7.9 113 1279-1394 258-390 (845)
277 KOG4265 Predicted E3 ubiquitin 40.6 11 0.00024 44.9 0.7 46 1115-1163 290-336 (349)
278 COG0464 SpoVK ATPases of the A 39.5 54 0.0012 41.6 6.6 44 669-712 250-298 (494)
279 PRK05580 primosome assembly pr 38.7 1.6E+02 0.0035 39.1 11.0 77 1279-1358 189-266 (679)
280 cd03418 GRX_GRXb_1_3_like Glut 38.0 1.2E+02 0.0027 27.4 7.1 58 1282-1339 1-59 (75)
281 PF13607 Succ_CoA_lig: Succiny 37.5 1.3E+02 0.0028 31.7 7.9 85 1282-1387 3-89 (138)
282 PRK10917 ATP-dependent DNA hel 37.3 1.5E+02 0.0033 39.4 10.3 77 1279-1356 309-389 (681)
283 TIGR02768 TraA_Ti Ti-type conj 37.1 2E+02 0.0044 38.6 11.5 40 667-712 351-390 (744)
284 PF13177 DNA_pol3_delta2: DNA 37.1 5.5E+02 0.012 27.5 13.2 43 673-715 2-44 (162)
285 PRK05298 excinuclease ABC subu 36.9 1.5E+02 0.0033 39.2 10.2 71 667-803 11-82 (652)
286 KOG2932 E3 ubiquitin ligase in 36.8 17 0.00037 42.3 1.3 44 1114-1162 89-133 (389)
287 KOG1645 RING-finger-containing 36.8 13 0.00028 44.9 0.4 58 1115-1174 4-67 (463)
288 TIGR00595 priA primosomal prot 36.6 1.8E+02 0.0039 37.3 10.5 77 1279-1358 24-101 (505)
289 KOG1812 Predicted E3 ubiquitin 36.5 18 0.0004 44.4 1.6 54 1115-1168 146-208 (384)
290 cd03028 GRX_PICOT_like Glutare 36.0 1.1E+02 0.0024 29.4 6.7 59 1279-1338 6-70 (90)
291 TIGR00365 monothiol glutaredox 35.3 1.1E+02 0.0024 30.0 6.7 58 1279-1336 10-73 (97)
292 KOG0920 ATP-dependent RNA heli 33.7 2E+02 0.0043 39.3 10.4 41 667-714 172-212 (924)
293 KOG3039 Uncharacterized conser 33.0 20 0.00043 40.6 1.1 38 1116-1154 222-263 (303)
294 COG5243 HRD1 HRD ubiquitin lig 32.9 65 0.0014 38.6 5.2 48 1111-1161 283-343 (491)
295 KOG4275 Predicted E3 ubiquitin 32.6 14 0.00031 42.7 -0.1 27 1116-1142 301-328 (350)
296 KOG0952 DNA/RNA helicase MER3/ 31.6 76 0.0017 43.1 6.0 58 779-838 973-1031(1230)
297 PF04641 Rtf2: Rtf2 RING-finge 31.6 30 0.00066 40.2 2.4 50 1115-1168 113-166 (260)
298 PF13173 AAA_14: AAA domain 30.8 44 0.00095 34.1 3.1 40 910-950 63-102 (128)
299 KOG1571 Predicted E3 ubiquitin 30.5 20 0.00043 42.9 0.6 42 1115-1162 305-346 (355)
300 TIGR00604 rad3 DNA repair heli 30.2 63 0.0014 43.0 5.2 43 668-713 10-52 (705)
301 CHL00181 cbbX CbbX; Provisiona 29.9 1E+02 0.0023 36.3 6.4 20 693-712 62-81 (287)
302 KOG0950 DNA polymerase theta/e 29.8 1.3E+02 0.0029 40.6 7.7 56 781-839 271-327 (1008)
303 PF13245 AAA_19: Part of AAA d 29.4 67 0.0015 30.1 3.8 22 693-714 13-34 (76)
304 TIGR00643 recG ATP-dependent D 29.4 2.1E+02 0.0046 37.6 9.8 76 1279-1355 283-362 (630)
305 KOG1734 Predicted RING-contain 28.5 22 0.00047 40.8 0.4 52 1116-1169 225-287 (328)
306 PHA03096 p28-like protein; Pro 25.8 57 0.0012 38.5 3.2 34 1116-1149 179-220 (284)
307 KOG1815 Predicted E3 ubiquitin 25.7 43 0.00094 42.0 2.4 52 1115-1166 70-129 (444)
308 PF00580 UvrD-helicase: UvrD/R 25.3 1.4E+02 0.003 34.7 6.4 36 669-713 1-36 (315)
309 PLN03025 replication factor C 25.3 93 0.002 37.1 5.0 59 908-966 99-158 (319)
310 KOG2817 Predicted E3 ubiquitin 25.2 36 0.00078 41.3 1.5 46 1114-1161 333-383 (394)
311 COG0553 HepA Superfamily II DN 24.2 11 0.00024 50.7 -3.4 80 1283-1379 445-524 (866)
312 PHA00673 acetyltransferase dom 23.6 1.2E+02 0.0026 32.7 4.8 44 909-952 88-134 (154)
313 PRK11054 helD DNA helicase IV; 23.2 1.4E+02 0.003 39.8 6.4 38 667-713 195-232 (684)
314 KOG1133 Helicase of the DEAD s 23.2 4.2E+02 0.0092 35.0 10.1 14 909-922 349-362 (821)
315 PF14570 zf-RING_4: RING/Ubox 22.9 60 0.0013 28.1 2.0 42 1118-1161 1-46 (48)
316 PRK13889 conjugal transfer rel 22.9 4E+02 0.0087 37.0 10.6 49 909-959 434-483 (988)
317 PRK14087 dnaA chromosomal repl 22.8 2.9E+02 0.0062 34.9 8.8 21 691-711 142-162 (450)
318 cd05563 PTS_IIB_ascorbate PTS_ 22.8 2E+02 0.0044 27.1 5.9 51 782-836 2-54 (86)
319 TIGR03345 VI_ClpV1 type VI sec 22.6 2.8E+02 0.006 38.0 9.2 22 691-712 209-230 (852)
320 cd05566 PTS_IIB_galactitol PTS 22.5 1.6E+02 0.0034 28.0 5.1 55 781-837 2-58 (89)
321 KOG0925 mRNA splicing factor A 22.0 66 0.0014 40.1 2.8 61 892-956 143-211 (699)
322 TIGR02562 cas3_yersinia CRISPR 21.9 3.2E+02 0.0069 37.9 9.2 48 1331-1381 837-884 (1110)
323 PF11395 DUF2873: Protein of u 20.6 1E+02 0.0022 25.0 2.6 19 24-42 15-33 (43)
324 COG4646 DNA methylase [Transcr 20.5 44 0.00096 41.2 1.0 31 936-966 473-503 (637)
325 TIGR00614 recQ_fam ATP-depende 20.4 7.4E+02 0.016 31.3 11.9 78 1280-1358 51-135 (470)
326 PRK14873 primosome assembly pr 20.1 3.8E+02 0.0082 35.6 9.4 61 1279-1341 187-249 (665)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-102 Score=885.29 Aligned_cols=576 Identities=41% Similarity=0.702 Sum_probs=477.4
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccc
Q 000537 658 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 737 (1435)
Q Consensus 658 ~~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 737 (1435)
+.+|.+ +.++|+|||+++|+|+..+|.++. .|||||||||+|||+|+|||++..-
T Consensus 175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~---------------------- 229 (791)
T KOG1002|consen 175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV---------------------- 229 (791)
T ss_pred ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence 456666 578999999999999999999875 8999999999999999999998621
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000537 738 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 817 (1435)
Q Consensus 738 ~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~ 817 (1435)
..+|||||||.-.+.||.+||.+|.. +.+++++|||..
T Consensus 230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~ 267 (791)
T KOG1002|consen 230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK 267 (791)
T ss_pred ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence 12469999999999999999999875 789999999999
Q ss_pred CCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCccc
Q 000537 818 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 897 (1435)
Q Consensus 818 r~k~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~ 897 (1435)
|.+..++|..||||+|||.++.+++.++. +++ +||.. .
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~~---------------~Gf-----------------rrKng----------v 305 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQD---------------YGF-----------------RRKNG----------V 305 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhcc---------------ccc-----------------cccCC----------c
Confidence 99999999999999999999988765431 111 11111 1
Q ss_pred ccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchH-------
Q 000537 898 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK------- 970 (1435)
Q Consensus 898 ~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~------- 970 (1435)
+.-+++|+++.|.||||||||.||++.+.+++|++.|++.+||||||||+||++.|||++++||+..||.-+-
T Consensus 306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~ 385 (791)
T KOG1002|consen 306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA 385 (791)
T ss_pred ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence 2235789999999999999999999999999999999999999999999999999999999999999984321
Q ss_pred ------------------------HHHhhhcccCCCCch-----hhHHHHHHHHhHhhheeccccccCCCCccCCCCcEE
Q 000537 971 ------------------------SFCSMIKVPISKNPV-----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1021 (1435)
Q Consensus 971 ------------------------~F~~~f~~pi~~~~~-----~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e 1021 (1435)
.|...+..||.+... .+....+.+|+.+|+||||-.-.+ .+-|||+.+
T Consensus 386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv 462 (791)
T KOG1002|consen 386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIV 462 (791)
T ss_pred ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccce
Confidence 233333456655432 335678999999999999865444 267999999
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccH
Q 000537 1022 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1101 (1435)
Q Consensus 1022 ~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~ 1101 (1435)
.+.+--|+.+|.++|+.|...++..|..|.++|.+..||+||+.++.||||+++||.|+.... ...++.
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------~~n~~~ 531 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA-----------NANLPD 531 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh-----------hcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999875311 111111
Q ss_pred HHHHHHHHHhhhhcccccCCCCCCccchhcccCcccchhhhhhhccc----CCCCCCCccccccccccchhhhhhhcccc
Q 000537 1102 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 1177 (1435)
Q Consensus 1102 e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~----~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~ 1177 (1435)
+ .....+|.+|.++.++++.+.|.|.||+-|+.++... ..-.||. |...+..+---.. .....+
T Consensus 532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~--C~i~LsiDlse~a-lek~~l 599 (791)
T KOG1002|consen 532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPV--CHIGLSIDLSEPA-LEKTDL 599 (791)
T ss_pred c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcc--ccccccccccchh-hhhcch
Confidence 1 1235789999999999999999999999999887643 3346774 8877765511100 000000
Q ss_pred ccCCCCCCCCCCCCCcccccCCccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000537 1178 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1257 (1435)
Q Consensus 1178 ~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 1257 (1435)
.. .... -.-.......+..|.||+++.+.|.-+.+.
T Consensus 600 ~~-Fk~s----------SIlnRinm~~~qsSTKIEAL~EEl~~l~~r--------------------------------- 635 (791)
T KOG1002|consen 600 KG-FKAS----------SILNRINMDDWQSSTKIEALVEELYFLRER--------------------------------- 635 (791)
T ss_pred hh-hhhH----------HHhhhcchhhhcchhHHHHHHHHHHHHHHc---------------------------------
Confidence 00 0000 000012234566799999999988875321
Q ss_pred cccchhhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 000537 1258 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1337 (1435)
Q Consensus 1258 ~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~ 1337 (1435)
....|.|||||||+|||+|+..|.+.|+..+.+.|+|++++|.++|+.|.++++++|+|+
T Consensus 636 --------------------d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 636 --------------------DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred --------------------ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 145799999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000537 1338 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1417 (1435)
Q Consensus 1338 StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1417 (1435)
|++|||+.|||+.|++|++|||||||++|.||.+|+|||||.|||.|+||++++|||++|+++|++|..|+.+.+|+++.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~ 775 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE 775 (791)
T ss_pred EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CccccCCCHHHHHHhhc
Q 000537 1418 GGQQTRLTVDDLNYLFM 1434 (1435)
Q Consensus 1418 ~~~~~~lt~~DL~~LF~ 1434 (1435)
.+.+|+++|+++||.
T Consensus 776 --Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 776 --AISKLTEEDMQFLFN 790 (791)
T ss_pred --HHHhcCHHHHHHHhc
Confidence 467999999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8e-87 Score=783.96 Aligned_cols=550 Identities=37% Similarity=0.614 Sum_probs=430.8
Q ss_pred CCCCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccc
Q 000537 656 AEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLD 735 (1435)
Q Consensus 656 ~e~~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~ 735 (1435)
++...+|..++++|+|||+.|+.||..+|.... .|||||||||||||+++|+||+..+.. + ...
T Consensus 313 t~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~--~GGILaddmGLGKTlsmislil~qK~~--------~----~~~-- 376 (901)
T KOG4439|consen 313 TDLTETPDGLKVELMPHQKAALRWLLWRESQPP--SGGILADDMGLGKTLSMISLILHQKAA--------R----KAR-- 376 (901)
T ss_pred ccccCCCCcceeecchhhhhhhhhhcccccCCC--CCcccccccccccchHHHHHHHHHHHH--------H----Hhh--
Confidence 333444444689999999999999999998754 899999999999999999999875421 0 000
Q ss_pred ccccccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000537 736 EEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG 815 (1435)
Q Consensus 736 ~~~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG 815 (1435)
......+.+||||||++|+.||..|+.+.+. ...|+|++|||
T Consensus 377 -------------------------------------~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~-~n~LsV~~~HG 418 (901)
T KOG4439|consen 377 -------------------------------------EKKGESASKTLIICPASLIHQWEAEVARRLE-QNALSVYLYHG 418 (901)
T ss_pred -------------------------------------cccccccCCeEEeCcHHHHHHHHHHHHHHHh-hcceEEEEecC
Confidence 0001112259999999999999999999987 45799999999
Q ss_pred CC-CCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000537 816 SS-RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 894 (1435)
Q Consensus 816 ~~-r~k~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~ 894 (1435)
.+ |......|.+||||||||..+.+. .+++ .+
T Consensus 419 ~n~r~i~~~~L~~YDvViTTY~lva~~--------~~~e-~~-------------------------------------- 451 (901)
T KOG4439|consen 419 PNKREISAKELRKYDVVITTYNLVANK--------PDDE-LE-------------------------------------- 451 (901)
T ss_pred CccccCCHHHHhhcceEEEeeeccccC--------Cchh-hh--------------------------------------
Confidence 99 777889999999999999998641 1111 00
Q ss_pred cccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHHHHh
Q 000537 895 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 974 (1435)
Q Consensus 895 ~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~ 974 (1435)
.....+||.++.|.||||||||.|||++|+.+.|++.|++..|||||||||||++.|+|+|++||+..||++.+.|.+
T Consensus 452 --~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke 529 (901)
T KOG4439|consen 452 --EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKE 529 (901)
T ss_pred --cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHH
Confidence 001146899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCchhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHc-
Q 000537 975 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAA- 1053 (1435)
Q Consensus 975 ~f~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~- 1053 (1435)
.+..+- ..+..++.-+.+++||||||+.+-.++++..||++..+++.++|+..|...|+.+...++..++.++-.
T Consensus 530 ~i~~~s----~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~ 605 (901)
T KOG4439|consen 530 NIDNMS----KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQR 605 (901)
T ss_pred hccCcc----ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 876433 344578888999999999999998889999999999999999999999999999988777666554321
Q ss_pred -----------------------------------ccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhh
Q 000537 1054 -----------------------------------GTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKK 1098 (1435)
Q Consensus 1054 -----------------------------------g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~ 1098 (1435)
|.......+||.+|+||||+|+||.+.+...+... ..+.+-
T Consensus 606 e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~----~~~~g~ 681 (901)
T KOG4439|consen 606 EDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEE----FQMNGG 681 (901)
T ss_pred hhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHH----hhhcCc
Confidence 22223456799999999999999976654322110 000000
Q ss_pred cc-HHHHHHHHHHhhhhcccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhcccc
Q 000537 1099 LP-QERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSL 1177 (1435)
Q Consensus 1099 l~-~e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~ 1177 (1435)
.. .+.+..+....+.. ....+.|... +|.
T Consensus 682 ~~sde~~~e~~~l~el~------------k~~~T~~~~D--------------------~~e------------------ 711 (901)
T KOG4439|consen 682 DDSDEEQLEEDNLAELE------------KNDETDCSDD--------------------NCE------------------ 711 (901)
T ss_pred chhhhhhhhhhHHHhhh------------hccccccccc--------------------ccc------------------
Confidence 00 00111111110000 0001111100 010
Q ss_pred ccCCCCCCCCCCCCCcccccCCccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000537 1178 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1257 (1435)
Q Consensus 1178 ~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 1257 (1435)
+.|..... .. -...+.+.|+...++.++.+.
T Consensus 712 -------d~p~~~~~-q~------Fe~~r~S~Ki~~~l~~le~i~----------------------------------- 742 (901)
T KOG4439|consen 712 -------DLPTAFPD-QA------FEPDRPSCKIAMVLEILETIL----------------------------------- 742 (901)
T ss_pred -------cccccchh-hh------cccccchhHHHHHHHHHHHHh-----------------------------------
Confidence 00000000 00 012235889999998888741
Q ss_pred cccchhhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCC-ccEEE
Q 000537 1258 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMI 1336 (1435)
Q Consensus 1258 ~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~-v~VLL 1336 (1435)
....+|+||.|||+++|++++.+|++.|..|..++|....++|+.+|+.||...+ .+|||
T Consensus 743 -------------------~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL 803 (901)
T KOG4439|consen 743 -------------------TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVML 803 (901)
T ss_pred -------------------hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEE
Confidence 1256899999999999999999999999999999999999999999999998654 99999
Q ss_pred eeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 000537 1337 MSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1416 (1435)
Q Consensus 1337 ~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~ 1416 (1435)
+|+.|||+||||+.|||+|++|++|||+.|+||.+||+|+||+++|+||||++++|||+||..+|++|..++..++.+..
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~ 883 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSA 883 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred cCccccCCCHHHHHHhhcC
Q 000537 1417 TGGQQTRLTVDDLNYLFMV 1435 (1435)
Q Consensus 1417 ~~~~~~~lt~~DL~~LF~~ 1435 (1435)
+ ...++||..|||-||++
T Consensus 884 t-r~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 884 T-RKMNKLTLADLKKLFGL 901 (901)
T ss_pred c-cccccccHHHHHHHhCC
Confidence 5 36789999999999986
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.6e-84 Score=770.82 Aligned_cols=459 Identities=33% Similarity=0.533 Sum_probs=394.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccc
Q 000537 660 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 739 (1435)
Q Consensus 660 ~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 739 (1435)
.|.++....|++||.+|++||.++.... -+||||||||||||+|+||++.+.+..
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~eng---ingILaDEMGLGKTlQtIs~l~yl~~~---------------------- 213 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENG---INGILADEMGLGKTLQTISLLGYLKGR---------------------- 213 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcC---cccEeehhcccchHHHHHHHHHHHHHh----------------------
Confidence 4666665899999999999999988755 469999999999999999999875421
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000537 740 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 819 (1435)
Q Consensus 740 ~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~ 819 (1435)
....+|.||+||.|++.||.+||++|+| .+++++|+|.+..
T Consensus 214 ------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 214 ------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 1224789999999999999999999987 7999999998744
Q ss_pred CC-----cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000537 820 KD-----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 894 (1435)
Q Consensus 820 k~-----~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~ 894 (1435)
+. ...-..+||+||||++..++
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~d----------------------------------------------------- 281 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKD----------------------------------------------------- 281 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhh-----------------------------------------------------
Confidence 31 12224899999999998642
Q ss_pred cccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHHHHh
Q 000537 895 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 974 (1435)
Q Consensus 895 ~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~ 974 (1435)
.+.|..+.|..+||||||+|||.++..++.++.+.+.+|++|||||+||++.|||+||+||.|+.|++...|.+
T Consensus 282 ------k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~s 355 (971)
T KOG0385|consen 282 ------KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDS 355 (971)
T ss_pred ------HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHH
Confidence 23588899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCchhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000537 975 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1054 (1435)
Q Consensus 975 ~f~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g 1054 (1435)
||......+....+.+|+.+|+||+|||.|.+|.. .|||+.+.++++.|++.|+++|..+...-. ......+
T Consensus 356 wF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl---~~~n~~~ 427 (971)
T KOG0385|consen 356 WFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDL---DALNGEG 427 (971)
T ss_pred HHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcc---hhhcccc
Confidence 99987766777789999999999999999999987 699999999999999999999998754322 2222222
Q ss_pred cccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCCCCCccchhcccC
Q 000537 1055 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1134 (1435)
Q Consensus 1055 ~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~Cg 1134 (1435)
. .....++..+++||++|+||+|+.+.+.
T Consensus 428 ~--~~k~kL~NI~mQLRKccnHPYLF~g~eP------------------------------------------------- 456 (971)
T KOG0385|consen 428 K--GEKTKLQNIMMQLRKCCNHPYLFDGAEP------------------------------------------------- 456 (971)
T ss_pred c--chhhHHHHHHHHHHHhcCCccccCCCCC-------------------------------------------------
Confidence 2 1345678889999999999999865321
Q ss_pred cccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccchHHHHH
Q 000537 1135 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1214 (1435)
Q Consensus 1135 HvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~al 1214 (1435)
+ |. ....+.....|.|+..+
T Consensus 457 ------------------------------------------------g---~p---------yttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 457 ------------------------------------------------G---PP---------YTTDEHLVTNSGKMLVL 476 (971)
T ss_pred ------------------------------------------------C---CC---------CCcchHHHhcCcceehH
Confidence 0 00 00111233357787777
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHH
Q 000537 1215 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1294 (1435)
Q Consensus 1215 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~Ld 1294 (1435)
-++|..+ ++.|+|||||||++.|||
T Consensus 477 DkLL~~L-------------------------------------------------------k~~GhRVLIFSQmt~mLD 501 (971)
T KOG0385|consen 477 DKLLPKL-------------------------------------------------------KEQGHRVLIFSQMTRMLD 501 (971)
T ss_pred HHHHHHH-------------------------------------------------------HhCCCeEEEeHHHHHHHH
Confidence 7666653 348999999999999999
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhh
Q 000537 1295 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1373 (1435)
Q Consensus 1295 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRa 1373 (1435)
+|+.++.-+++.|+||||+++.++|.++|+.||.++ +..|+|+||+|||+||||++|++||+||..|||....||++|+
T Consensus 502 ILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 502 ILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred HHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 999999999999999999999999999999999975 6999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 000537 1374 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1415 (1435)
Q Consensus 1374 hRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d 1415 (1435)
|||||+++|+||||++++||||+|+++...|.++-..+++.+
T Consensus 582 HRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 582 HRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred HhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999888765
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=9e-83 Score=760.54 Aligned_cols=475 Identities=30% Similarity=0.491 Sum_probs=400.6
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccc
Q 000537 659 SAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 738 (1435)
Q Consensus 659 ~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 738 (1435)
..|. .+...|++||+.||.||++.... ..|||||||||||||+|+|++++.....
T Consensus 197 ~vPg-~I~~~Lf~yQreGV~WL~~L~~q---~~GGILgDeMGLGKTIQiisFLaaL~~S--------------------- 251 (923)
T KOG0387|consen 197 KVPG-FIWSKLFPYQREGVQWLWELYCQ---RAGGILGDEMGLGKTIQIISFLAALHHS--------------------- 251 (923)
T ss_pred cccH-HHHHHhhHHHHHHHHHHHHHHhc---cCCCeecccccCccchhHHHHHHHHhhc---------------------
Confidence 3444 45667999999999999998774 4799999999999999999999875432
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 000537 739 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 818 (1435)
Q Consensus 739 ~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r 818 (1435)
+...+|+|||||++++.||..|+++|.+ .++|.+|||...
T Consensus 252 -------------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t~s 291 (923)
T KOG0387|consen 252 -------------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGTGS 291 (923)
T ss_pred -------------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecCCc
Confidence 1223689999999999999999999987 699999999876
Q ss_pred CC---------------CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCcc
Q 000537 819 TK---------------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDR 883 (1435)
Q Consensus 819 ~k---------------~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~r 883 (1435)
.. .........|+||||+.++..
T Consensus 292 ~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~------------------------------------------ 329 (923)
T KOG0387|consen 292 GARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ------------------------------------------ 329 (923)
T ss_pred ccccccchhhhhhhhhheeeecccCcEEEEehhhhccc------------------------------------------
Confidence 31 112233556999999998631
Q ss_pred ccccCCCCCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhcccccc
Q 000537 884 KGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRY 963 (1435)
Q Consensus 884 k~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp 963 (1435)
..++..+.|+.||+||+|+|||++|+.+.+|+.|++.+|++||||||||++.|||+|+.|+.|
T Consensus 330 -----------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~P 392 (923)
T KOG0387|consen 330 -----------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFP 392 (923)
T ss_pred -----------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccC
Confidence 124778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhcccCCCCchh---------h---HHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHH
Q 000537 964 DPFAVYKSFCSMIKVPISKNPVK---------G---YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDE 1031 (1435)
Q Consensus 964 ~pf~~~~~F~~~f~~pi~~~~~~---------~---~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~e 1031 (1435)
+.+++...|...|..||..+... + ...|+.++.|++|||+|.+|.. ..||.|.+.|+.|.||+.
T Consensus 393 G~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 393 GKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred CcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHH
Confidence 99999999999999999876432 1 3468999999999999999975 589999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHh
Q 000537 1032 ERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL 1111 (1435)
Q Consensus 1032 Er~~Y~~L~~~s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~l 1111 (1435)
||.+|+.+..... +..+.. | ..++|..+.-||++||||.|+.+....
T Consensus 469 QR~~Y~~fl~s~~--v~~i~n-g-----~~~~l~Gi~iLrkICnHPdll~~~~~~------------------------- 515 (923)
T KOG0387|consen 469 QRRLYQRFLNSSE--VNKILN-G-----KRNCLSGIDILRKICNHPDLLDRRDED------------------------- 515 (923)
T ss_pred HHHHHHHHhhhHH--HHHHHc-C-----CccceechHHHHhhcCCcccccCcccc-------------------------
Confidence 9999998864432 222221 2 234577788899999999887532100
Q ss_pred hhhcccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCC
Q 000537 1112 EASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYS 1191 (1435)
Q Consensus 1112 e~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s 1191 (1435)
T Consensus 516 -------------------------------------------------------------------------------- 515 (923)
T KOG0387|consen 516 -------------------------------------------------------------------------------- 515 (923)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhc
Q 000537 1192 DSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKC 1271 (1435)
Q Consensus 1192 ~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 1271 (1435)
..+.+..++.+..+.|++.+..+|..+.+
T Consensus 516 ---~~~~~D~~g~~k~sGKm~vl~~ll~~W~k------------------------------------------------ 544 (923)
T KOG0387|consen 516 ---EKQGPDYEGDPKRSGKMKVLAKLLKDWKK------------------------------------------------ 544 (923)
T ss_pred ---cccCCCcCCChhhcchHHHHHHHHHHHhh------------------------------------------------
Confidence 00000111334468999999999988532
Q ss_pred cccccccCCCeEEEEcccHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000537 1272 SIDSIKLGGEKAIVFSQWTKMLDLLEASLK-DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1350 (1435)
Q Consensus 1272 ~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~-~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1350 (1435)
.|.|+|+|||...|||+|+..|. ..|+.|+++||.++.+.|+.+|++||++..++|+|++|++||+|||||.
T Consensus 545 -------qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 545 -------QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred -------CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 67899999999999999999999 6899999999999999999999999999999999999999999999999
Q ss_pred cCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCccccCCCHHHHH
Q 000537 1351 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLN 1430 (1435)
Q Consensus 1351 An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~ 1430 (1435)
||+||+|||.|||....||..|||||||+|+|.||||++.+||||+||.+|.-|+.+.+.++...+. ..-+...||.
T Consensus 618 AnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q---~RfF~~~dl~ 694 (923)
T KOG0387|consen 618 ANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQ---RRFFKGNDLH 694 (923)
T ss_pred CceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHH---hhhcccccHH
Confidence 9999999999999999999999999999999999999999999999999999999999999865432 2347888999
Q ss_pred HhhcC
Q 000537 1431 YLFMV 1435 (1435)
Q Consensus 1431 ~LF~~ 1435 (1435)
.||.+
T Consensus 695 dLFsl 699 (923)
T KOG0387|consen 695 DLFSL 699 (923)
T ss_pred HHhCC
Confidence 99964
No 5
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=4.5e-82 Score=774.58 Aligned_cols=528 Identities=31% Similarity=0.502 Sum_probs=422.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCC
Q 000537 639 DERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPS 718 (1435)
Q Consensus 639 de~~~~~~~l~~~~~p~~e~~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~ 718 (1435)
.||.+++..+..-..|......| ++..||.||.+||+|+....+-. ..||||||||||||+|+|+.++.....+
T Consensus 949 ~erkFLeqlldpski~~y~Ip~p---I~a~LRkYQqEGVnWLaFLnky~---LHGILcDDMGLGKTLQticilAsd~y~r 1022 (1549)
T KOG0392|consen 949 EERKFLEQLLDPSKIPEYKIPVP---ISAKLRKYQQEGVNWLAFLNKYK---LHGILCDDMGLGKTLQTICILASDHYKR 1022 (1549)
T ss_pred HHHHHHHHhcCcccCCccccccc---hhHHHHHHHHhccHHHHHHHHhc---ccceeeccccccHHHHHHHHHHHHHHhh
Confidence 55556655543333333222223 46789999999999999887744 4599999999999999999998754320
Q ss_pred CCCccchhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHH
Q 000537 719 FRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEEL 798 (1435)
Q Consensus 719 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI 798 (1435)
+....+| ...|.|||||.+|..+|+.|+
T Consensus 1023 -------------------------------~s~~~e~---------------------~~~PSLIVCPsTLtGHW~~E~ 1050 (1549)
T KOG0392|consen 1023 -------------------------------RSESSEF---------------------NRLPSLIVCPSTLTGHWKSEV 1050 (1549)
T ss_pred -------------------------------cccchhh---------------------ccCCeEEECCchhhhHHHHHH
Confidence 0111111 134689999999999999999
Q ss_pred HHHhcCCCCcEEEEEeCCC--CCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCC
Q 000537 799 RNKVTSKGSLSVLVYHGSS--RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRK 876 (1435)
Q Consensus 799 ~k~~~~~~~L~VlvyhG~~--r~k~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k 876 (1435)
.++++ .|+|+.|-|.. |.....+..+++|+||+|+++++++.
T Consensus 1051 ~kf~p---fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--------------------------------- 1094 (1549)
T KOG0392|consen 1051 KKFFP---FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--------------------------------- 1094 (1549)
T ss_pred HHhcc---hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH---------------------------------
Confidence 99988 49999999875 44456677889999999999986531
Q ss_pred CCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhh
Q 000537 877 CPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYS 956 (1435)
Q Consensus 877 ~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLys 956 (1435)
.|.++.|.++|+||+|-|||.+++.++|++.|++.+|++||||||||++.|||+
T Consensus 1095 --------------------------~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWS 1148 (1549)
T KOG0392|consen 1095 --------------------------YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWS 1148 (1549)
T ss_pred --------------------------HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHH
Confidence 267788999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccchHHHHhhhcccCCCCc------------hhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEE
Q 000537 957 YFRFLRYDPFAVYKSFCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLK 1024 (1435)
Q Consensus 957 lL~FLrp~pf~~~~~F~~~f~~pi~~~~------------~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv 1024 (1435)
++.||+|+.++..+.|.++|.+|+-... ..++..||+.+-||||||+|.+|+. +||||.++.+
T Consensus 1149 LFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQDy 1223 (1549)
T KOG0392|consen 1149 LFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQDY 1223 (1549)
T ss_pred HHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhhe
Confidence 9999999999999999999999984321 2236778999999999999999997 8999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHcccccch--HHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHH
Q 000537 1025 QVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN--YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQE 1102 (1435)
Q Consensus 1025 ~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~--~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e 1102 (1435)
+|+|+|.|+++|+.+....+.......+.|....+ ..||+++|..||+.|+||.|+.+........
T Consensus 1224 yCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~------------ 1291 (1549)
T KOG0392|consen 1224 YCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAA------------ 1291 (1549)
T ss_pred eeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHH------------
Confidence 99999999999999977744333333333333322 6899999999999999999987542211100
Q ss_pred HHHHHHHHhhhhcccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCC
Q 000537 1103 RQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQP 1182 (1435)
Q Consensus 1103 ~~~~ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~ 1182 (1435)
++..|+|. +..+
T Consensus 1292 --------------------------i~~~l~~~-------------------------------------~~~L----- 1303 (1549)
T KOG0392|consen 1292 --------------------------IVSHLAHF-------------------------------------NSSL----- 1303 (1549)
T ss_pred --------------------------HHHHHHHh-------------------------------------hhhH-----
Confidence 01111110 0000
Q ss_pred CCCCCCCCCCcccccCCccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccch
Q 000537 1183 GQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISD 1262 (1435)
Q Consensus 1183 ~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~ 1262 (1435)
.....++|+.|+-++|.+ |+.++........
T Consensus 1304 --------------------Hdi~hspKl~AL~qLL~e----------------------CGig~~~~~~~g~------- 1334 (1549)
T KOG0392|consen 1304 --------------------HDIQHSPKLSALKQLLSE----------------------CGIGNNSDSEVGT------- 1334 (1549)
T ss_pred --------------------HHhhhchhHHHHHHHHHH----------------------hCCCCCCcccccC-------
Confidence 011248899999998886 2222222111100
Q ss_pred hhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHHHhc---CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec
Q 000537 1263 ENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1339 (1435)
Q Consensus 1263 ~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~~---gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St 1339 (1435)
.....++|+|||+||.+|+|+++..|-+. .+.|.|+||++++.+|++++++||+||.+.|||++|
T Consensus 1335 ------------~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTT 1402 (1549)
T KOG0392|consen 1335 ------------PSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTT 1402 (1549)
T ss_pred ------------cchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEee
Confidence 00126899999999999999999999765 577999999999999999999999999999999999
Q ss_pred cccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCc
Q 000537 1340 KAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG 1419 (1435)
Q Consensus 1340 kAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~ 1419 (1435)
.+||+|||||+|++|||+|-.|||+...||+||||||||||.|.|||||++||+||+|+.+|+-|...++.+++.+- .
T Consensus 1403 hVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN--a 1480 (1549)
T KOG0392|consen 1403 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN--A 1480 (1549)
T ss_pred eccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997654 3
Q ss_pred cccCCCHHHHHHhhc
Q 000537 1420 QQTRLTVDDLNYLFM 1434 (1435)
Q Consensus 1420 ~~~~lt~~DL~~LF~ 1434 (1435)
...-+..++|..||.
T Consensus 1481 sl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1481 SLETMDTDQLLDLFT 1495 (1549)
T ss_pred cccccCHHHHHHHhc
Confidence 567788999999997
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=3e-81 Score=772.64 Aligned_cols=600 Identities=26% Similarity=0.412 Sum_probs=477.3
Q ss_pred cCCCccccccccccchhccccccccccccccccCCCccccccCCCCCccCCCCCCCeEEEeccCCccCcchhhhhhcccc
Q 000537 512 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLS 591 (1435)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 591 (1435)
-...+++..+++.|+|+.+++.+|-.+++.|+. ++...|..+|+.++++|=.-.-.....++.||-+
T Consensus 242 Wet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r-------------~E~~~~~~~dy~~VdRIia~~~~~d~eYLvKW~~ 308 (1373)
T KOG0384|consen 242 WETESELLEMNVRGLKKVDNFKKKVIEEDRWRR-------------QEREEDLNKDYVIVDRIIAEQTSKDPEYLVKWRG 308 (1373)
T ss_pred ccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhhhhhhhhhhhhhcccCCCceeEEEecC
Confidence 456677888999999999999888889999977 4677889999999999966655666999999999
Q ss_pred cccccccccccccCCCccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCCCCCCCCCCccCCCcH
Q 000537 592 MNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLR 671 (1435)
Q Consensus 592 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~l~~~~~p~~e~~~P~~~l~~~L~p 671 (1435)
++|..|.|.......|....+...|.........|..+..-...+.. ++ .+. ..|+......|+.
T Consensus 309 LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~-----~~----Kle------~qp~~~~g~~LRd 373 (1373)
T KOG0384|consen 309 LPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPR-----FR----KLE------KQPEYKGGNELRD 373 (1373)
T ss_pred CCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchh-----HH----Hhh------cCccccccchhhh
Confidence 99999999999999997777766666554333333223222222222 22 111 2344444568999
Q ss_pred HHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccccccccccccc
Q 000537 672 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 751 (1435)
Q Consensus 672 hQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vk~ 751 (1435)
||++|++||+...... ..||||||||||||||+|+++......
T Consensus 374 yQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~---------------------------------- 416 (1373)
T KOG0384|consen 374 YQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS---------------------------------- 416 (1373)
T ss_pred hhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh----------------------------------
Confidence 9999999999865533 459999999999999999999764321
Q ss_pred ccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 000537 752 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---------- 821 (1435)
Q Consensus 752 ~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~---------- 821 (1435)
..-.+|.|||||.|++.+|++|+..|. .+++++|||....+.
T Consensus 417 ------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~ 468 (1373)
T KOG0384|consen 417 ------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHS 468 (1373)
T ss_pred ------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHHHHHHHHHheec
Confidence 122478999999999999999999996 599999999854321
Q ss_pred c-ccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000537 822 P-CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 900 (1435)
Q Consensus 822 ~-~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~ 900 (1435)
. ...-+++++||||+++.++
T Consensus 469 ~~~~~lkf~~lltTye~~LkD----------------------------------------------------------- 489 (1373)
T KOG0384|consen 469 SNTKKLKFNALLTTYEIVLKD----------------------------------------------------------- 489 (1373)
T ss_pred CCccccccceeehhhHHHhcc-----------------------------------------------------------
Confidence 1 2223799999999999643
Q ss_pred cCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHHHHhhhcccC
Q 000537 901 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 980 (1435)
Q Consensus 901 ~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~~f~~pi 980 (1435)
...|..++|..+++||||++||..+..+.++..++..+|+++||||+||++.|||+|++||.|+.|..+..|...+
T Consensus 490 k~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~---- 565 (1373)
T KOG0384|consen 490 KAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF---- 565 (1373)
T ss_pred HhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh----
Confidence 1248889999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCchhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchH
Q 000537 981 SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 1060 (1435)
Q Consensus 981 ~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~~ 1060 (1435)
.......+.+|+.+|+|+||||.|++|-+ .|||+.+.++.|+||+.|+++|..+..+.... +..|....+
T Consensus 566 ~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~----LtKG~~g~~- 635 (1373)
T KOG0384|consen 566 DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSA----LTKGAKGST- 635 (1373)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHH----HhccCCCCC-
Confidence 34456789999999999999999999987 79999999999999999999999987554332 334443333
Q ss_pred HHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCCCCCccchhcccCcccchh
Q 000537 1061 VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 1140 (1435)
Q Consensus 1061 ~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~ 1140 (1435)
.++|..++.||+|||||+|+++.+..-. ....+-..+. .+
T Consensus 636 ~~lLNimmELkKccNHpyLi~gaee~~~-----~~~~~~~~d~---~L-------------------------------- 675 (1373)
T KOG0384|consen 636 PSLLNIMMELKKCCNHPYLIKGAEEKIL-----GDFRDKMRDE---AL-------------------------------- 675 (1373)
T ss_pred chHHHHHHHHHHhcCCccccCcHHHHHH-----HhhhhcchHH---HH--------------------------------
Confidence 7889999999999999999976432100 0000000000 00
Q ss_pred hhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccchHHHHHHHHHHh
Q 000537 1141 CICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQS 1220 (1435)
Q Consensus 1141 Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~ 1220 (1435)
.....+|.|+..+-++|..
T Consensus 676 -------------------------------------------------------------~~lI~sSGKlVLLDKLL~r 694 (1373)
T KOG0384|consen 676 -------------------------------------------------------------QALIQSSGKLVLLDKLLPR 694 (1373)
T ss_pred -------------------------------------------------------------HHHHHhcCcEEeHHHHHHH
Confidence 0000123343333333333
Q ss_pred hcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHH
Q 000537 1221 LAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL 1300 (1435)
Q Consensus 1221 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L 1300 (1435)
++..|+|||||||.+.|||+|+++|
T Consensus 695 -------------------------------------------------------Lk~~GHrVLIFSQMVRmLDIL~eYL 719 (1373)
T KOG0384|consen 695 -------------------------------------------------------LKEGGHRVLIFSQMVRMLDILAEYL 719 (1373)
T ss_pred -------------------------------------------------------HhcCCceEEEhHHHHHHHHHHHHHH
Confidence 3448999999999999999999999
Q ss_pred HhcCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCC
Q 000537 1301 KDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1379 (1435)
Q Consensus 1301 ~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQt 1379 (1435)
..++++|.||||++..+.|+++|+.||.. .+-+|||+||+|||+||||+.|++|||+|..|||....||..|+|||||+
T Consensus 720 ~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk 799 (1373)
T KOG0384|consen 720 SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK 799 (1373)
T ss_pred HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhccc
Confidence 99999999999999999999999999985 45889999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC---cCccccCCCHHHHHHhh
Q 000537 1380 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE---TGGQQTRLTVDDLNYLF 1433 (1435)
Q Consensus 1380 r~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~---~~~~~~~lt~~DL~~LF 1433 (1435)
+.|.|||||+++||||.|++++.+|.-+-.+++..-. .....+.++.+||-.|+
T Consensus 800 k~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 800 KHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred ceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999988776654222 22455678888887764
No 7
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.8e-81 Score=773.79 Aligned_cols=556 Identities=46% Similarity=0.716 Sum_probs=480.2
Q ss_pred cCCCCCCCCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhh
Q 000537 651 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLE 730 (1435)
Q Consensus 651 ~~~p~~e~~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~ 730 (1435)
+.++..+...|.+.++++ |+....||...+.....++||||||+||+|||+++|++++..+....
T Consensus 117 ~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~----------- 181 (674)
T KOG1001|consen 117 IILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK----------- 181 (674)
T ss_pred hhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc-----------
Confidence 444555556676656666 66666666666666667799999999999999999999998654310
Q ss_pred hccccccccccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEE
Q 000537 731 TLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 810 (1435)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~V 810 (1435)
+ .......+.+|||||.+++.||..|+ ......+.+.+
T Consensus 182 -----~------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-ek~~~~~~l~v 219 (674)
T KOG1001|consen 182 -----E------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-EKVTEEDKLSI 219 (674)
T ss_pred -----c------------------------------------hhhccccCceeEecchHHHHHHHHHH-hccCCccceEE
Confidence 0 00123457899999999999999999 66677889999
Q ss_pred EEEeCCCCCCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCC
Q 000537 811 LVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 890 (1435)
Q Consensus 811 lvyhG~~r~k~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk 890 (1435)
++||| |.++..++..||||||||.++..
T Consensus 220 ~v~~g--r~kd~~el~~~dVVltTy~il~~-------------------------------------------------- 247 (674)
T KOG1001|consen 220 YVYHG--RTKDKSELNSYDVVLTTYDILKN-------------------------------------------------- 247 (674)
T ss_pred EEecc--cccccchhcCCceEEeeHHHhhc--------------------------------------------------
Confidence 99999 89999999999999999999852
Q ss_pred CCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchH
Q 000537 891 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 970 (1435)
Q Consensus 891 ~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~ 970 (1435)
++|..+.|.|||+||||+|+|++++.+++++.|++.+||||||||+||+++|+|++++|++.+||..+.
T Consensus 248 -----------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~ 316 (674)
T KOG1001|consen 248 -----------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQN 316 (674)
T ss_pred -----------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhH
Confidence 357789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCc-hhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000537 971 SFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 1049 (1435)
Q Consensus 971 ~F~~~f~~pi~~~~-~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~ 1049 (1435)
.|...+..|+.++. .+++.+++.+|+.+|+||+|....+|+|++.|||+.+.++.++++.+|+.+|..+....+.++..
T Consensus 317 ~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~ 396 (674)
T KOG1001|consen 317 YFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSN 396 (674)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHH
Confidence 99999999999998 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCCCCCccch
Q 000537 1050 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAV 1129 (1435)
Q Consensus 1050 ~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~v 1129 (1435)
++..|++..+|..++..++||||+|+||.++............... ....+...+... ..|.+|.+ ++.++
T Consensus 397 ~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~-------~~~~~i~~l~~~-~~c~ic~~-~~~~~ 467 (674)
T KOG1001|consen 397 YANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAA-------LIIRLIVDLSVS-HWCHICCD-LDSFF 467 (674)
T ss_pred HhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccch-------HHHHHHHHHhhc-cccccccc-cccce
Confidence 9999999999999999999999999999887643221111111110 011144445555 89999999 88899
Q ss_pred hcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccch
Q 000537 1130 VSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSS 1209 (1435)
Q Consensus 1130 vt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~Ss 1209 (1435)
++.|+|.||.+|+.+.+....+. |++.|+..+....+++...+....... ...+.
T Consensus 468 it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~~------------------------~~~s~ 522 (674)
T KOG1001|consen 468 ITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIINDL------------------------LPESS 522 (674)
T ss_pred eecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhhc------------------------cchhh
Confidence 99999999999999999887766 666799999888888755544433320 00588
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEccc
Q 000537 1210 KIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQW 1289 (1435)
Q Consensus 1210 Ki~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~ 1289 (1435)
|+.++++.|+.... ... .|+||||||
T Consensus 523 ki~~~~~~l~~~~~-----------------------------------------------------s~~-~kiiifsq~ 548 (674)
T KOG1001|consen 523 KIYAFLKILQAKEM-----------------------------------------------------SEQ-PKIVIFSQL 548 (674)
T ss_pred hhHHHHHHHhhccC-----------------------------------------------------CCC-CceeeehhH
Confidence 99999999883100 002 499999999
Q ss_pred HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHH
Q 000537 1290 TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1369 (1435)
Q Consensus 1290 t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QA 1369 (1435)
+.++++++..|...++.+.+++|.|+..+|.+.+..|+.++.++||++|++|||.||||++|+|||++||||||+.|+||
T Consensus 549 ~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQa 628 (674)
T KOG1001|consen 549 IWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQA 628 (674)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCC
Q 000537 1370 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1414 (1435)
Q Consensus 1370 IGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~ 1414 (1435)
|+|+||+||+++|+|+||++++|+||||+++|++|+.++..++|+
T Consensus 629 idR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 629 IDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999875
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.3e-78 Score=779.07 Aligned_cols=474 Identities=29% Similarity=0.478 Sum_probs=395.7
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccc
Q 000537 660 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 739 (1435)
Q Consensus 660 ~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 739 (1435)
.|. .+...|++||+.||+||+..... +.|||||||||||||+|+|+++...+..
T Consensus 162 qP~-~i~~~Lr~YQleGlnWLi~l~~~---g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPS-CIKGKMRDYQLAGLNWLIRLYEN---GINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CCh-HhccchHHHHHHHHHHHHHHHhc---CCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 344 45678999999999999987653 3689999999999999999999753211
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000537 740 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 819 (1435)
Q Consensus 740 ~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~ 819 (1435)
....+|+|||||++++.||.+||.+|++ .+++++|+|....
T Consensus 216 ------------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~e 256 (1033)
T PLN03142 216 ------------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEE 256 (1033)
T ss_pred ------------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHH
Confidence 1124679999999999999999999986 6899999998643
Q ss_pred CCc-----ccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCC
Q 000537 820 KDP-----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 894 (1435)
Q Consensus 820 k~~-----~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~ 894 (1435)
+.. ....++|||||||+++.++.
T Consensus 257 R~~~~~~~~~~~~~dVvITSYe~l~~e~---------------------------------------------------- 284 (1033)
T PLN03142 257 RAHQREELLVAGKFDVCVTSFEMAIKEK---------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHHhcccCCCcceecHHHHHHHH----------------------------------------------------
Confidence 211 12357999999999986421
Q ss_pred cccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHHHHh
Q 000537 895 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 974 (1435)
Q Consensus 895 ~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~ 974 (1435)
..|..+.|++|||||||+|||..|+++++++.|++.+||+|||||++|++.|||++|+||.|+.|.+...|..
T Consensus 285 -------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~ 357 (1033)
T PLN03142 285 -------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDE 357 (1033)
T ss_pred -------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHH
Confidence 1366788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCchhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000537 975 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1054 (1435)
Q Consensus 975 ~f~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g 1054 (1435)
+|..+..........+|+.+|++||+||+|.+|.. .|||+.+.+++|.||+.|+++|..+.......+ ..+
T Consensus 358 ~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l----~~g 428 (1033)
T PLN03142 358 WFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVV----NAG 428 (1033)
T ss_pred HHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH----hcc
Confidence 99876555556678899999999999999999975 799999999999999999999998875543322 222
Q ss_pred cccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCCCCCccchhcccC
Q 000537 1055 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1134 (1435)
Q Consensus 1055 ~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~Cg 1134 (1435)
. ....++..+++||++|+||.|+...... .+
T Consensus 429 ~---~~~~LlnilmqLRk~cnHP~L~~~~ep~----------------------------------------~~------ 459 (1033)
T PLN03142 429 G---ERKRLLNIAMQLRKCCNHPYLFQGAEPG----------------------------------------PP------ 459 (1033)
T ss_pred c---cHHHHHHHHHHHHHHhCCHHhhhccccc----------------------------------------Cc------
Confidence 2 2345788899999999999876421100 00
Q ss_pred cccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccchHHHHH
Q 000537 1135 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1214 (1435)
Q Consensus 1135 HvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~al 1214 (1435)
...+. .....++|+..+
T Consensus 460 ------------------------------------------------------~~~~e---------~lie~SgKl~lL 476 (1033)
T PLN03142 460 ------------------------------------------------------YTTGE---------HLVENSGKMVLL 476 (1033)
T ss_pred ------------------------------------------------------ccchh---------HHhhhhhHHHHH
Confidence 00000 011237788888
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHH
Q 000537 1215 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1294 (1435)
Q Consensus 1215 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~Ld 1294 (1435)
.++|..+ +..++||||||||+.+++
T Consensus 477 dkLL~~L-------------------------------------------------------k~~g~KVLIFSQft~~Ld 501 (1033)
T PLN03142 477 DKLLPKL-------------------------------------------------------KERDSRVLIFSQMTRLLD 501 (1033)
T ss_pred HHHHHHH-------------------------------------------------------HhcCCeEEeehhHHHHHH
Confidence 8777763 126789999999999999
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhh
Q 000537 1295 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1373 (1435)
Q Consensus 1295 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRa 1373 (1435)
+|+.+|...|++|++|+|+++..+|+++|++|+.++ ...|+|+|++|||+|||||.|++||+||+||||+.+.||+||+
T Consensus 502 iLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 502 ILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred HHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999754 4679999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCccccCCCHHHHHHhhc
Q 000537 1374 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1434 (1435)
Q Consensus 1374 hRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~ 1434 (1435)
|||||+++|+||||++++||||+|++++.+|..+...+++.+... ....++.+||..||.
T Consensus 582 HRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~-~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 582 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLA-EQKTVNKDELLQMVR 641 (1033)
T ss_pred hhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998765432 235688899988874
No 9
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-79 Score=732.59 Aligned_cols=495 Identities=31% Similarity=0.514 Sum_probs=389.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccc
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 746 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 746 (1435)
++|.+||+.||+|+.-..+..+ .||||||||||||+|+||++++.+..
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq~----------------------------- 445 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQI----------------------------- 445 (941)
T ss_pred CcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHHc-----------------------------
Confidence 4699999999999988777554 47999999999999999999875422
Q ss_pred cccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----
Q 000537 747 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----- 821 (1435)
Q Consensus 747 ~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~----- 821 (1435)
+..+|.|||||+|++.||.+|+++|+| .|+|..|||+...+.
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 124689999999999999999999998 799999999874321
Q ss_pred -cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000537 822 -PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 900 (1435)
Q Consensus 822 -~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~ 900 (1435)
...-..|||+||||..+... ++|
T Consensus 493 i~~~~~~ydVllTTY~la~~~--------kdD------------------------------------------------ 516 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASS--------KDD------------------------------------------------ 516 (941)
T ss_pred HhccCCCccEEEEEeecccCC--------hHH------------------------------------------------
Confidence 11123899999999998631 111
Q ss_pred cCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccch-HHHHhhhccc
Q 000537 901 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY-KSFCSMIKVP 979 (1435)
Q Consensus 901 ~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~-~~F~~~f~~p 979 (1435)
++.|.+.+|+.||.||+|++||..|.+++-+..++|+.|++|||||+||++.||++||.|+.|..|... ..+...|...
T Consensus 517 Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k 596 (941)
T KOG0389|consen 517 RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAK 596 (941)
T ss_pred HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhcc
Confidence 235788899999999999999999999999999999999999999999999999999999999999754 4454444432
Q ss_pred CC-CC-------chhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000537 980 IS-KN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYA 1051 (1435)
Q Consensus 980 i~-~~-------~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~ 1051 (1435)
-. .+ ..+++.+...+++||+|||.|.+|++ .||||+.++.+|+|+..|+.+|+.+............
T Consensus 597 ~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~ 671 (941)
T KOG0389|consen 597 KTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVS 671 (941)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccc
Confidence 21 11 12357788999999999999999998 8999999999999999999999988654421111111
Q ss_pred HcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHH------HHHHHHhhhhcccccCCCCCC
Q 000537 1052 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ------MYLLNCLEASLAICGICNDPP 1125 (1435)
Q Consensus 1052 ~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~------~~ll~~le~~~~~C~iC~d~~ 1125 (1435)
.. ....+ -..|++||++++||.|++.+..+..++ .|++.+..+.. .++...++
T Consensus 672 ~n-s~~~~----~~vlmqlRK~AnHPLL~R~~Y~de~L~---~mak~il~e~ay~~~n~qyIfEDm~------------- 730 (941)
T KOG0389|consen 672 KN-SELKS----GNVLMQLRKAANHPLLFRSIYTDEKLR---KMAKRILNEPAYKKANEQYIFEDME------------- 730 (941)
T ss_pred cc-ccccc----chHHHHHHHHhcChhHHHHhccHHHHH---HHHHHHhCchhhhhcCHHHHHHHHH-------------
Confidence 11 00111 346899999999999998776554333 33443332211 11111111
Q ss_pred ccchhc-ccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCc
Q 000537 1126 EDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGV 1204 (1435)
Q Consensus 1126 e~~vvt-~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~ 1204 (1435)
+++ ---|.+|.+.- .+ .. .......
T Consensus 731 ---~msDfelHqLc~~f~--~~-------------------------------~~------------------f~L~d~~ 756 (941)
T KOG0389|consen 731 ---VMSDFELHQLCCQFR--HL-------------------------------SK------------------FQLKDDL 756 (941)
T ss_pred ---hhhHHHHHHHHHhcC--CC-------------------------------cc------------------cccCCch
Confidence 111 11244443311 00 00 0001134
Q ss_pred cccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEE
Q 000537 1205 WYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAI 1284 (1435)
Q Consensus 1205 ~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVI 1284 (1435)
+..|+|++.|-++|.++ +..|+|||
T Consensus 757 ~mdSgK~r~L~~LLp~~-------------------------------------------------------k~~G~RVL 781 (941)
T KOG0389|consen 757 WMDSGKCRKLKELLPKI-------------------------------------------------------KKKGDRVL 781 (941)
T ss_pred hhhhhhHhHHHHHHHHH-------------------------------------------------------hhcCCEEE
Confidence 45689999999988874 23689999
Q ss_pred EEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcC
Q 000537 1285 VFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPT 1364 (1435)
Q Consensus 1285 VFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa 1364 (1435)
||||||.|||+|+..|...++.|+|+||++....|+.+|++|+++.+++|+|+||+|||.||||++||+||++|..+||.
T Consensus 782 iFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~ 861 (941)
T KOG0389|consen 782 IFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY 861 (941)
T ss_pred EeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000537 1365 TEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1417 (1435)
Q Consensus 1365 ~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1417 (1435)
...||.+|+||+||+|+|+|||||+++||||.|+++.+.|..+-..+-++++.
T Consensus 862 dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 862 DDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred ccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 99999999999999999999999999999999999999999998777655443
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=6.7e-78 Score=726.73 Aligned_cols=581 Identities=30% Similarity=0.452 Sum_probs=424.2
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccc
Q 000537 659 SAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 738 (1435)
Q Consensus 659 ~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 738 (1435)
.+-+.++...|+.||+.||.||+......+ .||||||||||||||+|+|+++.--.
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLACe--------------------- 661 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLACE--------------------- 661 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHHhc---------------------
Confidence 355678888999999999999999887664 59999999999999999999864211
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 000537 739 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 818 (1435)
Q Consensus 739 ~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r 818 (1435)
....+|.|||||++++-+|+-|+++|++ .|+++.|.|+.+
T Consensus 662 -------------------------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~k 701 (1958)
T KOG0391|consen 662 -------------------------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHK 701 (1958)
T ss_pred -------------------------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHH
Confidence 1345789999999999999999999998 799999999976
Q ss_pred CCC-----cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCC
Q 000537 819 TKD-----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 893 (1435)
Q Consensus 819 ~k~-----~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~ 893 (1435)
.+. +.+-..|.|.||+|..+..+.
T Consensus 702 ErkeKRqgW~kPnaFHVCItSYklv~qd~--------------------------------------------------- 730 (1958)
T KOG0391|consen 702 ERKEKRQGWAKPNAFHVCITSYKLVFQDL--------------------------------------------------- 730 (1958)
T ss_pred HHHHHhhcccCCCeeEEeehhhHHHHhHH---------------------------------------------------
Confidence 542 233346889999999997432
Q ss_pred CcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHHHH
Q 000537 894 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 973 (1435)
Q Consensus 894 ~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~ 973 (1435)
..|.+.+|..+||||||+|||.++++++|+..+++.+|++|||||+||++.|||+|++||+|..|.+...|+
T Consensus 731 --------~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk 802 (1958)
T KOG0391|consen 731 --------TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFK 802 (1958)
T ss_pred --------HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHH
Confidence 125667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCC-------chhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH
Q 000537 974 SMIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQ 1046 (1435)
Q Consensus 974 ~~f~~pi~~~-------~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~ 1046 (1435)
.||.+|+..- ...-+.+|+++|++|+|||+|.+|.+ .||.|.+++++|.||..||.+|+.+..+ ..
T Consensus 803 ~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq--~~ 875 (1958)
T KOG0391|consen 803 PWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQ--PG 875 (1958)
T ss_pred HHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhc--cc
Confidence 9999998543 23347899999999999999999987 8999999999999999999999988533 33
Q ss_pred HHHHHHcccccchHHHHHHHHHHHHHHccCcccccccC-------------ch-hhhhhHHHH-----------------
Q 000537 1047 FKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFD-------------SN-SLLRSSVEM----------------- 1095 (1435)
Q Consensus 1047 ~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~-------------~~-~~~~~s~e~----------------- 1095 (1435)
-++.+.. .+++++|..|++||++||||.|+...- +. ...+...+.
T Consensus 876 TKetLkS----GhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~ 951 (1958)
T KOG0391|consen 876 TKETLKS----GHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTS 951 (1958)
T ss_pred hhhHhhc----CchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcc
Confidence 3444444 478899999999999999998863200 00 000000000
Q ss_pred -------------Hh----hc-----------------------------------------------------------
Q 000537 1096 -------------AK----KL----------------------------------------------------------- 1099 (1435)
Q Consensus 1096 -------------a~----~l----------------------------------------------------------- 1099 (1435)
+. .+
T Consensus 952 ~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p 1031 (1958)
T KOG0391|consen 952 AVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGP 1031 (1958)
T ss_pred cccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCc
Confidence 00 00
Q ss_pred --------------------------------------------------------------------------------
Q 000537 1100 -------------------------------------------------------------------------------- 1099 (1435)
Q Consensus 1100 -------------------------------------------------------------------------------- 1099 (1435)
T Consensus 1032 ~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gt 1111 (1958)
T KOG0391|consen 1032 QSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGT 1111 (1958)
T ss_pred HhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcch
Confidence
Q ss_pred ----------------cHHHHHHHHHHhhhh---------cccccCCCC-----------CCccchhcccCc-ccchhhh
Q 000537 1100 ----------------PQERQMYLLNCLEAS---------LAICGICND-----------PPEDAVVSICGH-VFCNQCI 1142 (1435)
Q Consensus 1100 ----------------~~e~~~~ll~~le~~---------~~~C~iC~d-----------~~e~~vvt~CgH-vfC~~Ci 1142 (1435)
..+++..+-.+++.- ...-.+|.- .++..+++.|.- ..|..-|
T Consensus 1112 at~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iI 1191 (1958)
T KOG0391|consen 1112 ATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDII 1191 (1958)
T ss_pred hhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHH
Confidence 000000000001000 000112221 111222333321 1122222
Q ss_pred hhhc------ccCCCCCCCcccccccccc-chhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccchHHHHHH
Q 000537 1143 CERL------TADDNQCPTRNCKIRLSLS-SVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAAL 1215 (1435)
Q Consensus 1143 ~e~l------~~~~~~Cp~~~C~~~l~~~-~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~all 1215 (1435)
..+. ......|..+.-.--+... .++. .-+...+....... .....-....+...=..|+..|+.++.
T Consensus 1192 drfafv~ppvva~ppslra~~ppp~~~~r~r~~~-~qlrsel~p~~~~~----q~~~~r~lqFPelrLiqyDcGKLQtLA 1266 (1958)
T KOG0391|consen 1192 DRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILR-QQLRSELAPYFQQR----QTTAPRLLQFPELRLIQYDCGKLQTLA 1266 (1958)
T ss_pred HHheeecccccCCChhhcCCCCCcccchHHHHHH-HHHHHHhccccchh----hccchhhhcCcchheeecccchHHHHH
Confidence 2221 0112222211100000000 0000 00000000000000 001111122233334456778888888
Q ss_pred HHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHHH
Q 000537 1216 EVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDL 1295 (1435)
Q Consensus 1216 elL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~Ldl 1295 (1435)
-+|+.+ +..|+++|||+|.+.|||+
T Consensus 1267 iLLqQL-------------------------------------------------------k~eghRvLIfTQMtkmLDV 1291 (1958)
T KOG0391|consen 1267 ILLQQL-------------------------------------------------------KSEGHRVLIFTQMTKMLDV 1291 (1958)
T ss_pred HHHHHH-------------------------------------------------------HhcCceEEehhHHHHHHHH
Confidence 888774 3379999999999999999
Q ss_pred HHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhc
Q 000537 1296 LEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHR 1375 (1435)
Q Consensus 1296 Le~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahR 1375 (1435)
|+.+|..+|+.|+||||.++.++|+.++++||.|+.++++|+|+++||+|+|||.|++|||||..|||+...||.+|+||
T Consensus 1292 LeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChR 1371 (1958)
T KOG0391|consen 1292 LEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHR 1371 (1958)
T ss_pred HHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCccccCCCHHHHHHhhcC
Q 000537 1376 IGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1435 (1435)
Q Consensus 1376 IGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~~ 1435 (1435)
|||+|+|||||||.+.||||.|+.....|+.+-+-++.+++. ...-++..+++.||++
T Consensus 1372 IGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdf--Tt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1372 IGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDF--TTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred hcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCc--cHHHHhhhhHHHHhcC
Confidence 999999999999999999999999999999998888765543 3455777888899974
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-75 Score=680.06 Aligned_cols=543 Identities=30% Similarity=0.474 Sum_probs=391.3
Q ss_pred CCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccc
Q 000537 661 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 740 (1435)
Q Consensus 661 P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~ 740 (1435)
.|.+++++|+.||..|++|++.....+. .||||||||||||+|+|+++++.. ++.
T Consensus 560 qPkil~ctLKEYQlkGLnWLvnlYdqGi---NGILADeMGLGKTVQsisvlAhLa--------------E~~-------- 614 (1185)
T KOG0388|consen 560 QPKILKCTLKEYQLKGLNWLVNLYDQGI---NGILADEMGLGKTVQSISVLAHLA--------------ETH-------- 614 (1185)
T ss_pred CchhhhhhhHHHhhccHHHHHHHHHccc---cceehhhhccchhHHHHHHHHHHH--------------Hhc--------
Confidence 4457889999999999999999877543 499999999999999999998642 111
Q ss_pred cccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 000537 741 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 820 (1435)
Q Consensus 741 ~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k 820 (1435)
.-.+|.|||+|+++|.+|+.||.+|+| .++++.|.|....+
T Consensus 615 ------------------------------------nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eR 655 (1185)
T KOG0388|consen 615 ------------------------------------NIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSER 655 (1185)
T ss_pred ------------------------------------cCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhh
Confidence 123689999999999999999999987 79999999986443
Q ss_pred C-----------cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCC
Q 000537 821 D-----------PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 889 (1435)
Q Consensus 821 ~-----------~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~k 889 (1435)
. -...+.++||||||+++..+ +
T Consensus 656 kiLrKfw~rKnmY~rna~fhVviTSYQlvVtD-----------e------------------------------------ 688 (1185)
T KOG0388|consen 656 KILRKFWNRKNMYRRNAPFHVVITSYQLVVTD-----------E------------------------------------ 688 (1185)
T ss_pred HHHHHhcchhhhhccCCCceEEEEeeeeeech-----------H------------------------------------
Confidence 2 12346789999999998531 1
Q ss_pred CCCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccch
Q 000537 890 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY 969 (1435)
Q Consensus 890 k~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~ 969 (1435)
..|.+++|..+||||||.||...|.+++.+...+++.|++||||||||++.|||+||+|++|..|++.
T Consensus 689 ------------ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDsh 756 (1185)
T KOG0388|consen 689 ------------KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSH 756 (1185)
T ss_pred ------------HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhch
Confidence 23788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCC-------chhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 000537 970 KSFCSMIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 1042 (1435)
Q Consensus 970 ~~F~~~f~~pi~~~-------~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~ 1042 (1435)
.+|.+||..-|+.. ..+.+++|+++|+||||||.|++|+. +|..+++..+.|+||..|+.+|+.+...
T Consensus 757 neFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~ 831 (1185)
T KOG0388|consen 757 NEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRS 831 (1185)
T ss_pred HHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHH
Confidence 99999998877643 35668999999999999999999987 8999999999999999999999988543
Q ss_pred HHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhh--------hhHHH-----HHhhccH--------
Q 000537 1043 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLL--------RSSVE-----MAKKLPQ-------- 1101 (1435)
Q Consensus 1043 s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~--------~~s~e-----~a~~l~~-------- 1101 (1435)
.. .+....++++||++|+||.|++......-+ ...+. +..++|.
T Consensus 832 iS---------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le 896 (1185)
T KOG0388|consen 832 IS---------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALE 896 (1185)
T ss_pred hh---------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHH
Confidence 22 112234789999999999998764432110 00000 0011111
Q ss_pred HHHHHHHHHhhhhcccccC---CCCCCcc----chh--cccC-cccch-----hhhhhhcccCC----------------
Q 000537 1102 ERQMYLLNCLEASLAICGI---CNDPPED----AVV--SICG-HVFCN-----QCICERLTADD---------------- 1150 (1435)
Q Consensus 1102 e~~~~ll~~le~~~~~C~i---C~d~~e~----~vv--t~Cg-HvfC~-----~Ci~e~l~~~~---------------- 1150 (1435)
..+..+.... ..+|.. .+..+.. +++ ...| .+|-. ..+...+....
T Consensus 897 ~~~fniye~i---~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~ 973 (1185)
T KOG0388|consen 897 MFRFNIYEMI---ERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAY 973 (1185)
T ss_pred HHHHhHHHHH---HHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHH
Confidence 1111111111 111221 1111110 000 0011 11100 00000000000
Q ss_pred -----CCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCccccc---CCccCCccccchHHHHHHHHHHhhc
Q 000537 1151 -----NQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE---APSCEGVWYNSSKIKAALEVLQSLA 1222 (1435)
Q Consensus 1151 -----~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e---~~~~~~~~~~SsKi~allelL~~l~ 1222 (1435)
..|-.|+.... ..+-....+.+ +++.......+.. .+........|.|+..+-++|.+
T Consensus 974 ~L~~~~y~y~P~v~ap---------PvLI~~ead~P---eId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~k-- 1039 (1185)
T KOG0388|consen 974 RLQRHVYCYSPVVAAP---------PVLISNEADLP---EIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPK-- 1039 (1185)
T ss_pred HhhhheeeeccccCCC---------CeeeecccCCC---CCCccccCcccccceecCcHHhhhccccceeeHHHHHHH--
Confidence 00110000000 00001111100 0000000000000 01111112234444444444433
Q ss_pred CCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHHHh
Q 000537 1223 KPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1302 (1435)
Q Consensus 1223 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~ 1302 (1435)
+++.++++|+|.|.|.|+|+|+.+|..
T Consensus 1040 -----------------------------------------------------LkaegHRvL~yfQMTkM~dl~EdYl~y 1066 (1185)
T KOG0388|consen 1040 -----------------------------------------------------LKAEGHRVLMYFQMTKMIDLIEDYLVY 1066 (1185)
T ss_pred -----------------------------------------------------hhcCCceEEehhHHHHHHHHHHHHHHh
Confidence 355899999999999999999999999
Q ss_pred cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcE
Q 000537 1303 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPV 1382 (1435)
Q Consensus 1303 ~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V 1382 (1435)
+|++|+|+||+....+|..+|.+|+. ++++|+|+||+|||+|||||+|++|||||..|||....||++|+||+||||+|
T Consensus 1067 r~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1067 RGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred hccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000537 1383 SVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1417 (1435)
Q Consensus 1383 ~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1417 (1435)
+||||++++||||+|+++..+|.+....++.+...
T Consensus 1146 tvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~ 1180 (1185)
T KOG0388|consen 1146 TVYRLITRGTVEEKVLERANQKDEVQQMVMHGNIF 1180 (1185)
T ss_pred eeeeecccccHHHHHHHHhhhHHHHHHHHHcCCcc
Confidence 99999999999999999999999998888765443
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=2.5e-66 Score=638.66 Aligned_cols=493 Identities=27% Similarity=0.385 Sum_probs=384.5
Q ss_pred CCCccCCCcHHHHHHHHHHHHhhccCC---CCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccc
Q 000537 662 DGVLAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 738 (1435)
Q Consensus 662 ~~~l~~~L~phQk~gl~wMl~rE~~~~---~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 738 (1435)
+..++-.|+|||++|+.||.+-..+.. ...|+|+||+||+|||+++|++|+.....
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq--------------------- 290 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ--------------------- 290 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh---------------------
Confidence 345667799999999999998776652 45899999999999999999999864321
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 000537 739 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 818 (1435)
Q Consensus 739 ~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r 818 (1435)
.|.. .+....+|||||++|+.+|++|+.||... ..+..+.+.|..+
T Consensus 291 -------------~P~~--------------------~~~~~k~lVV~P~sLv~nWkkEF~KWl~~-~~i~~l~~~~~~~ 336 (776)
T KOG0390|consen 291 -------------FPQA--------------------KPLINKPLVVAPSSLVNNWKKEFGKWLGN-HRINPLDFYSTKK 336 (776)
T ss_pred -------------CcCc--------------------cccccccEEEccHHHHHHHHHHHHHhccc-cccceeeeecccc
Confidence 1100 01235689999999999999999999763 4788888888766
Q ss_pred CC---------CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCC
Q 000537 819 TK---------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 889 (1435)
Q Consensus 819 ~k---------~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~k 889 (1435)
.. .....-.+-|.+.+|++++..+
T Consensus 337 ~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~----------------------------------------------- 369 (776)
T KOG0390|consen 337 SSWIKLKSILFLGYKQFTTPVLIISYETASDYC----------------------------------------------- 369 (776)
T ss_pred hhhhhhHHHHHhhhhheeEEEEeccHHHHHHHH-----------------------------------------------
Confidence 41 0111223458888998886321
Q ss_pred CCCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccch
Q 000537 890 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY 969 (1435)
Q Consensus 890 k~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~ 969 (1435)
..+....+++||+||+|+.||..+.+++|+.+|+..+|++|||||+||++.|++++|.|.+|+.++..
T Consensus 370 ------------~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~ 437 (776)
T KOG0390|consen 370 ------------RKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSI 437 (776)
T ss_pred ------------HHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccch
Confidence 11455668899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCch-----------hhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHH
Q 000537 970 KSFCSMIKVPISKNPV-----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQ 1038 (1435)
Q Consensus 970 ~~F~~~f~~pi~~~~~-----------~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~ 1038 (1435)
..|...+..|+.+... ...+.|+.++..|++||+-+.+.+ .||++.+.++.+.+++.|+.+|..
T Consensus 438 ~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~~ 512 (776)
T KOG0390|consen 438 SSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYKK 512 (776)
T ss_pred HHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHHH
Confidence 9999999988866322 236779999999999999966555 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccc
Q 000537 1039 LEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAIC 1118 (1435)
Q Consensus 1039 L~~~s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C 1118 (1435)
+.... .. ..+ . .+ .|..++.|+++|+||.|+...+.
T Consensus 513 l~~~~-~~-~~~------~-~~--~l~~~~~L~k~cnhP~L~~~~~~--------------------------------- 548 (776)
T KOG0390|consen 513 LLDSM-KM-RTL------K-GY--ALELITKLKKLCNHPSLLLLCEK--------------------------------- 548 (776)
T ss_pred HHHHH-Hh-hhh------h-cc--hhhHHHHHHHHhcCHHhhccccc---------------------------------
Confidence 86542 11 111 0 11 57778899999999988741100
Q ss_pred cCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccC
Q 000537 1119 GICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA 1198 (1435)
Q Consensus 1119 ~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~ 1198 (1435)
|.. ++. .+..+.+. + . ....
T Consensus 549 --~~~----------------------------------e~~------~~~~~~~~----~-~------------~~~~- 568 (776)
T KOG0390|consen 549 --TEK----------------------------------EKA------FKNPALLL----D-P------------GKLK- 568 (776)
T ss_pred --ccc----------------------------------ccc------ccChHhhh----c-c------------cccc-
Confidence 000 000 00000000 0 0 0000
Q ss_pred CccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhcccccccc
Q 000537 1199 PSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKL 1278 (1435)
Q Consensus 1199 ~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~ 1278 (1435)
........+.|+..++.+|.... ..
T Consensus 569 -~~~~~~~ks~kl~~L~~ll~~~~------------------------------------------------------ek 593 (776)
T KOG0390|consen 569 -LDAGDGSKSGKLLVLVFLLEVIR------------------------------------------------------EK 593 (776)
T ss_pred -cccccchhhhHHHHHHHHHHHHh------------------------------------------------------hh
Confidence 00011113667777777664421 01
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCEEEEe
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v-~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
...|+++.++++.++++++..++-+|..++++||+|+..+|+.+|+.||+.+.. +|||+|++|||+||||++|+|||+|
T Consensus 594 ~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~ 673 (776)
T KOG0390|consen 594 LLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILF 673 (776)
T ss_pred cceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEe
Confidence 457899999999999999999999999999999999999999999999997766 9999999999999999999999999
Q ss_pred cCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCccccCCCHHHHHHhhc
Q 000537 1358 DLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1434 (1435)
Q Consensus 1358 Dp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~ 1434 (1435)
||.|||+++.||++||||.||+|+|+||||++.||+||+|+++|-.|..+-..+|+..+... .....++++.||.
T Consensus 674 D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~--~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 674 DPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVE--KHFFTEDLKTLFD 748 (776)
T ss_pred CCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccc--cccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998766532 2233478888885
No 13
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.5e-68 Score=645.75 Aligned_cols=460 Identities=31% Similarity=0.494 Sum_probs=382.0
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccc
Q 000537 658 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 737 (1435)
Q Consensus 658 ~~~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 737 (1435)
+..|..+....|++||+.||.||+....+.+ -||||||||||||+++|+||.+....
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL---NGILADEMGLGKTIQtIsLitYLmE~-------------------- 440 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNL---NGILADEMGLGKTIQTISLITYLMEH-------------------- 440 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCc---ccccchhcccchHHHHHHHHHHHHHH--------------------
Confidence 4467777788999999999999998877664 49999999999999999999874210
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000537 738 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 817 (1435)
Q Consensus 738 ~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~ 817 (1435)
....+|.|||||.++|.+|..|+.+|.| .+..++|.|..
T Consensus 441 --------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp 479 (1157)
T KOG0386|consen 441 --------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTP 479 (1157)
T ss_pred --------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCH
Confidence 1224689999999999999999999966 89999999986
Q ss_pred CCCC----cccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCC
Q 000537 818 RTKD----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 893 (1435)
Q Consensus 818 r~k~----~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~ 893 (1435)
..+. .-.-.+|+|++|||+.+.++
T Consensus 480 ~~R~~l~~qir~gKFnVLlTtyEyiikd---------------------------------------------------- 507 (1157)
T KOG0386|consen 480 QQRSGLTKQQRHGKFNVLLTTYEYIIKD---------------------------------------------------- 507 (1157)
T ss_pred HHHhhHHHHHhcccceeeeeeHHHhcCC----------------------------------------------------
Confidence 4432 11227999999999988632
Q ss_pred CcccccccCcccccCccEEEEcCCcccCChhhHHHHHHH-hcccCcEEEEecccCCCChhhhhhhccccccccccchHHH
Q 000537 894 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 972 (1435)
Q Consensus 894 ~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~-~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F 972 (1435)
+..|.++.|..+||||+|+|||..++.+..+. ...+.+|++|||||+||++.|||++|+||-|..|++...|
T Consensus 508 -------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~F 580 (1157)
T KOG0386|consen 508 -------KALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAF 580 (1157)
T ss_pred -------HHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHH
Confidence 23488999999999999999999999999887 5689999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCch----------hhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 000537 973 CSMIKVPISKNPV----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 1042 (1435)
Q Consensus 973 ~~~f~~pi~~~~~----------~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~ 1042 (1435)
..||..|+..... -.+.+|+.+|+||+|||.|++|-. .||.+++.+++|++|.-|+.+|..+...
T Consensus 581 eqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~ 655 (1157)
T KOG0386|consen 581 EQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNK 655 (1157)
T ss_pred HHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhC
Confidence 9999999976542 126899999999999999999976 8999999999999999999999987533
Q ss_pred HHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCC
Q 000537 1043 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 1122 (1435)
Q Consensus 1043 s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~ 1122 (1435)
-+-. .+....+..+..+...++.||++|+||+++...+.. |
T Consensus 656 g~l~----~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~-------------------------------~---- 696 (1157)
T KOG0386|consen 656 GQLL----KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS-------------------------------Y---- 696 (1157)
T ss_pred CCCC----cCchhccccchhhhhHhHHHHHhcCCchhhhhhccc-------------------------------c----
Confidence 2111 011122345556788899999999999886422110 0
Q ss_pred CCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccC
Q 000537 1123 DPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCE 1202 (1435)
Q Consensus 1123 d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~ 1202 (1435)
++. ... .
T Consensus 697 ------------------------------~~~------~~~-------------------------------------~ 703 (1157)
T KOG0386|consen 697 ------------------------------TLH------YDI-------------------------------------K 703 (1157)
T ss_pred ------------------------------ccc------cCh-------------------------------------h
Confidence 000 000 0
Q ss_pred CccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCe
Q 000537 1203 GVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1282 (1435)
Q Consensus 1203 ~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eK 1282 (1435)
..+..+.|++.+-.+|-+ +++.+++
T Consensus 704 dL~R~sGKfELLDRiLPK-------------------------------------------------------LkatgHR 728 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPK-------------------------------------------------------LKATGHR 728 (1157)
T ss_pred HHHHhccHHHHHHhhhHH-------------------------------------------------------HHhcCcc
Confidence 111235566555555544 3457999
Q ss_pred EEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEecCCC
Q 000537 1283 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1361 (1435)
Q Consensus 1283 VIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W 1361 (1435)
|+.|+|.|.++++++.+|.-.++.|.|+||++..++|..+++.||.. ..+++||+|++|||+|||||.|++||++|..|
T Consensus 729 VLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw 808 (1157)
T KOG0386|consen 729 VLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW 808 (1157)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCC
Confidence 99999999999999999999999999999999999999999999984 45889999999999999999999999999999
Q ss_pred CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Q 000537 1362 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF 1412 (1435)
Q Consensus 1362 NPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~l 1412 (1435)
||..+.||.+|+|||||+++|.|.||++-+++||+|++.+..|..+...+.
T Consensus 809 np~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kvi 859 (1157)
T KOG0386|consen 809 NPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVI 859 (1157)
T ss_pred CchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhh
Confidence 999999999999999999999999999999999999999999988776654
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=6.7e-62 Score=581.02 Aligned_cols=596 Identities=24% Similarity=0.298 Sum_probs=382.8
Q ss_pred cCCCcHHHHHHHHHHHHhhc------cCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccc
Q 000537 666 AVPLLRHQRIALSWMVQKET------SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 739 (1435)
Q Consensus 666 ~~~L~phQk~gl~wMl~rE~------~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 739 (1435)
-..|.|||..||.||+.--- ....+.||||||=||||||+|.|+++......
T Consensus 666 v~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c---------------------- 723 (1567)
T KOG1015|consen 666 VIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC---------------------- 723 (1567)
T ss_pred HhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh----------------------
Confidence 34699999999999987322 22356899999999999999999998653210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcC---CCCcEEEEEeCC
Q 000537 740 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS---KGSLSVLVYHGS 816 (1435)
Q Consensus 740 ~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~---~~~L~VlvyhG~ 816 (1435)
. ..-.+.+|||||.+++.||..|+++|.+. ...|.|.-+...
T Consensus 724 -----------------~------------------klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 724 -----------------D------------------KLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred -----------------h------------------ccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhc
Confidence 0 01135689999999999999999999873 113455544444
Q ss_pred CCCCCc-ccc----cCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCC
Q 000537 817 SRTKDP-CEL----AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 891 (1435)
Q Consensus 817 ~r~k~~-~~L----~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~ 891 (1435)
.+..+. ..| .+-.|.|+.|+++++.-.. . ..+.+|
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~g-----------------r--------~vk~rk--------------- 808 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQG-----------------R--------NVKSRK--------------- 808 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhcc-----------------c--------chhhhH---------------
Confidence 442221 112 2457999999999753110 0 000000
Q ss_pred CCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHH
Q 000537 892 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 971 (1435)
Q Consensus 892 ~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~ 971 (1435)
..+.....|.+-+.|+||+||||.|||..+.+++|+.++++++|++|||||+||++.|+|.|++|++++.+++.++
T Consensus 809 ----~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~E 884 (1567)
T KOG1015|consen 809 ----LKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKE 884 (1567)
T ss_pred ----HHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHH
Confidence 1122234577888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCch------------hhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHH
Q 000537 972 FCSMIKVPISKNPV------------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1039 (1435)
Q Consensus 972 F~~~f~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L 1039 (1435)
|+++|..||.++.. .+-+-|..+|+.++-|+-...+.. .|||+++.++.|.||+.|+.+|+.+
T Consensus 885 frNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~y 959 (1567)
T KOG1015|consen 885 FRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQYY 959 (1567)
T ss_pred HHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHHH
Confidence 99999999988642 223558889999998887766654 7999999999999999999999987
Q ss_pred HHHHHHHHHHHHHcc-ccc---chHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhc
Q 000537 1040 EINSRDQFKEYAAAG-TVK---QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASL 1115 (1435)
Q Consensus 1040 ~~~s~~~~k~~~~~g-~~~---~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~ 1115 (1435)
.... ...| .+. ....++|+.+.-|+++..||..+.-..... ..+.+..+ ..
T Consensus 960 L~h~-------~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~-------enkR~~se-----------dd 1014 (1567)
T KOG1015|consen 960 LDHL-------TGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISK-------ENKRYFSE-----------DD 1014 (1567)
T ss_pred Hhhc-------cccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhh-------hhcccccc-----------cc
Confidence 5411 1111 111 144678889999999999997553211100 00000000 00
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCccc
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKL 1195 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~ 1195 (1435)
..-.||.+..++.....- ...|..--.-.+..++..-.............+.. ......... ++
T Consensus 1015 m~~fi~D~sde~e~s~~s-~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~-----rk~r~~~~~----------~~ 1078 (1567)
T KOG1015|consen 1015 MDEFIADDSDETEMSLSS-DDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKN-----RKSRGGGEG----------NV 1078 (1567)
T ss_pred hhccccCCCccccccccc-cchhhcccccccccccccccccccCCchhhhhhhh-----hhccccccC----------cc
Confidence 111222222111110000 00000000000000000000000000000000000 000000000 00
Q ss_pred ccCCccCCccccchHHHHHHHHHHhhcCCCC--CcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccc
Q 000537 1196 VEAPSCEGVWYNSSKIKAALEVLQSLAKPRG--NTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSI 1273 (1435)
Q Consensus 1196 ~e~~~~~~~~~~SsKi~allelL~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 1273 (1435)
.+. ..-....+.+++.+..... ..+...+...-... .+ ......+.++-+|-+| +
T Consensus 1079 ~~~---------g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e-~d-~~v~~~SgKmiLLleI------------L 1135 (1567)
T KOG1015|consen 1079 DET---------GNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTE-AD-AEVLEHSGKMILLLEI------------L 1135 (1567)
T ss_pred ccc---------CCCcchHHHHhhcccccccCCCCCchHhHHhhhhh-hh-hhhhhcCcceehHHHH------------H
Confidence 000 0000111222222111000 00000000000000 00 0000001111111111 1
Q ss_pred cccccCCCeEEEEcccHHHHHHHHHHHHh----------------------cCCcEEecCCCCCHHHHHHHHHHHhcCCC
Q 000537 1274 DSIKLGGEKAIVFSQWTKMLDLLEASLKD----------------------SSIQYRRLDGTMSVFARDKAVKDFNTLPE 1331 (1435)
Q Consensus 1274 ~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~----------------------~gI~~~rldGsms~~qR~~aI~~Fn~d~~ 1331 (1435)
..+.+-|.|+|||||....||+|+.+|.. .|..|.+|||++...+|+++.++||+..+
T Consensus 1136 ~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~N 1215 (1567)
T KOG1015|consen 1136 RMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTN 1215 (1567)
T ss_pred HHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCccc
Confidence 11234689999999999999999999963 26779999999999999999999998544
Q ss_pred --ccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000537 1332 --VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1409 (1435)
Q Consensus 1332 --v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~ 1409 (1435)
.+.+|+||+||++|+||.+|||||++|..|||....|+|-||||+||++||+||||++.+|+|++||++|..|+.++.
T Consensus 1216 lRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~ 1295 (1567)
T KOG1015|consen 1216 LRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSF 1295 (1567)
T ss_pred ceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhh
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcCccccCCCHHHHHHhhc
Q 000537 1410 SAFGEDETGGQQTRLTVDDLNYLFM 1434 (1435)
Q Consensus 1410 ~~lg~d~~~~~~~~lt~~DL~~LF~ 1434 (1435)
.++++... ....+..||..||.
T Consensus 1296 RVVDeqQv---~Rhy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1296 RVVDEQQV---ERHYTMNELTELYT 1317 (1567)
T ss_pred hhhhHHHH---HHHhhHhhhHHHhh
Confidence 99976432 34588899998885
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.3e-61 Score=629.62 Aligned_cols=495 Identities=38% Similarity=0.583 Sum_probs=396.8
Q ss_pred CCccCCCcHHHHHHHHHHHH-hhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccc
Q 000537 663 GVLAVPLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 741 (1435)
Q Consensus 663 ~~l~~~L~phQk~gl~wMl~-rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 741 (1435)
..+...|++||.+|+.||.. ... ...|||||||||||||+++|+++......
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------ 385 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------ 385 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc------------------------
Confidence 34556799999999999994 333 23789999999999999999999752211
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcE-EEEEeCCCCC-
Q 000537 742 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS-VLVYHGSSRT- 819 (1435)
Q Consensus 742 ~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~-VlvyhG~~r~- 819 (1435)
...+.++.|||||.+++.+|.+|+.+|.+ .++ +.+++|....
T Consensus 386 ---------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~ 429 (866)
T COG0553 386 ---------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSEL 429 (866)
T ss_pred ---------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccc
Confidence 00114579999999999999999998876 577 9999998852
Q ss_pred ----CCcccccC------CCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCC
Q 000537 820 ----KDPCELAK------FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 889 (1435)
Q Consensus 820 ----k~~~~L~~------~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~k 889 (1435)
....++.+ +|+++|||+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~----------------------------------------------- 462 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFL----------------------------------------------- 462 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------------------------------------------
Confidence 22223333 899999999997421
Q ss_pred CCCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhcc-cccccccc-
Q 000537 890 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR-FLRYDPFA- 967 (1435)
Q Consensus 890 k~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~-FLrp~pf~- 967 (1435)
.....+..+.|+++|+||||+|||..+..++++..+++.+||+|||||++|++.|||+++. |+.|..+.
T Consensus 463 ---------~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~ 533 (866)
T COG0553 463 ---------VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT 533 (866)
T ss_pred ---------hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc
Confidence 0012377889999999999999999999999999999999999999999999999999999 99999999
Q ss_pred chHHHHhhhcccCCCCch--------hhHHHHHHHHhHhhheecccc--ccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 000537 968 VYKSFCSMIKVPISKNPV--------KGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYS 1037 (1435)
Q Consensus 968 ~~~~F~~~f~~pi~~~~~--------~~~~~L~~lL~~~mLRRtK~d--V~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~ 1037 (1435)
....|..+|..|+..... ....+|+.++.+|++||+|.+ ++. .||++.+.++.++++++|+.+|.
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~ 608 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYE 608 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHH
Confidence 569999999998866543 334558899999999999999 654 89999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHcccc--cc--hHHHHHHHHHHHHHHccCccccccc-CchhhhhhHHHHHhhccHHHHHHHHH
Q 000537 1038 QLEI---NSRDQFKEYAAAGTV--KQ--NYVNILLMLLRLRQACDHPLLVKGF-DSNSLLRSSVEMAKKLPQERQMYLLN 1109 (1435)
Q Consensus 1038 ~L~~---~s~~~~k~~~~~g~~--~~--~~~~IL~~LlrLRq~c~HP~Lv~~~-~~~~~~~~s~e~a~~l~~e~~~~ll~ 1109 (1435)
.+.. .....+......+.. .. ...+++..+++||++|+||.++... ....
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~---------------------- 666 (866)
T COG0553 609 ALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF---------------------- 666 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc----------------------
Confidence 9887 444444444333211 11 3678999999999999999887532 1000
Q ss_pred HhhhhcccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCC
Q 000537 1110 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD 1189 (1435)
Q Consensus 1110 ~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~ 1189 (1435)
+..+....++....
T Consensus 667 --------~~~~~~~~~~~~~~---------------------------------------------------------- 680 (866)
T COG0553 667 --------DRIVLLLREDKDFD---------------------------------------------------------- 680 (866)
T ss_pred --------chhhhhhhcccccc----------------------------------------------------------
Confidence 00000000000000
Q ss_pred CCCcccccCCccCCccccc-hHHHHHHHHH-HhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHH
Q 000537 1190 YSDSKLVEAPSCEGVWYNS-SKIKAALEVL-QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKI 1267 (1435)
Q Consensus 1190 ~s~~e~~e~~~~~~~~~~S-sKi~allelL-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~ 1267 (1435)
.........+ .|+..+.++| ..+
T Consensus 681 ---------~~~~~~~~~s~~k~~~l~~ll~~~~---------------------------------------------- 705 (866)
T COG0553 681 ---------YLKKPLIQLSKGKLQALDELLLDKL---------------------------------------------- 705 (866)
T ss_pred ---------cccchhhhccchHHHHHHHHHHHHH----------------------------------------------
Confidence 0000111234 6777777777 332
Q ss_pred HhhccccccccCCC--eEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccc
Q 000537 1268 AAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1345 (1435)
Q Consensus 1268 ~~~~~~~~i~~~~e--KVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~G 1345 (1435)
...+. |+|||+||+.++++|+..|+..++.|++++|+++..+|+.++++|+++++..|+++|++|||.|
T Consensus 706 ---------~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~g 776 (866)
T COG0553 706 ---------LEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLG 776 (866)
T ss_pred ---------HhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccc
Confidence 11455 9999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCccccCCC
Q 000537 1346 LNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLT 1425 (1435)
Q Consensus 1346 LNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt 1425 (1435)
|||+.|++||++||||||+++.||++|+|||||+++|.|||+++++|+||+|+++|..|+.+...+++. +.......++
T Consensus 777 lnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~ 855 (866)
T COG0553 777 LNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLS 855 (866)
T ss_pred eeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 2235678899
Q ss_pred HHHHHHhhc
Q 000537 1426 VDDLNYLFM 1434 (1435)
Q Consensus 1426 ~~DL~~LF~ 1434 (1435)
.+|+..||.
T Consensus 856 ~~~~~~l~~ 864 (866)
T COG0553 856 IEDLLDLFS 864 (866)
T ss_pred HHHHHHHhc
Confidence 999999986
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-55 Score=517.15 Aligned_cols=583 Identities=25% Similarity=0.342 Sum_probs=388.9
Q ss_pred cCCCcHHHHHHHHHHHHhhccC------CCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccc
Q 000537 666 AVPLLRHQRIALSWMVQKETSS------LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 739 (1435)
Q Consensus 666 ~~~L~phQk~gl~wMl~rE~~~------~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 739 (1435)
..-|.|||.-|+.||......+ ..+.|+|||+.||||||+|.|+++-...
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~difl------------------------ 307 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFL------------------------ 307 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHh------------------------
Confidence 3348999999999998643322 2468999999999999999999974321
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcC--------CCCcEEE
Q 000537 740 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS--------KGSLSVL 811 (1435)
Q Consensus 740 ~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~--------~~~L~Vl 811 (1435)
+.-+++.+|+|+|-.+|.+|-.|+..|.+. +..+.|+
T Consensus 308 -----------------------------------RhT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf 352 (1387)
T KOG1016|consen 308 -----------------------------------RHTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVF 352 (1387)
T ss_pred -----------------------------------hcCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEE
Confidence 112367899999999999999999999884 2345666
Q ss_pred EEeCCCCCCC-----cccc-cCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCcc-ccCcccCCCCCCCccc
Q 000537 812 VYHGSSRTKD-----PCEL-AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMY-CSSSKKRKCPPSSDRK 884 (1435)
Q Consensus 812 vyhG~~r~k~-----~~~L-~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~-~~~~~k~k~~~~~~rk 884 (1435)
+.....++-+ ...+ ..-.|+|+.|++++-...+ . ++..+ .+..+||-.+.-.+-.
T Consensus 353 ~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk------------~------~~~~grpkkt~kr~~~~~i~~d 414 (1387)
T KOG1016|consen 353 LLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILK------------T------LPKKGRPKKTLKRISSGFIKDD 414 (1387)
T ss_pred EecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHh------------c------ccccCCccccccccCCcccCCc
Confidence 6554433221 1111 3567999999999743211 0 00000 0000011000000000
Q ss_pred cccCCCCCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccc
Q 000537 885 GSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYD 964 (1435)
Q Consensus 885 ~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~ 964 (1435)
.... ....+..+...|.+-+.|+||+||+|+|||.....+.|+..+++++|+.|||-|+||++-|.|.|+.|++|.
T Consensus 415 ~eD~----~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~ 490 (1387)
T KOG1016|consen 415 SEDQ----RQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPK 490 (1387)
T ss_pred hhhh----HHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecccc
Confidence 0000 011233455678889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhcccCCCCc------------hhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHH
Q 000537 965 PFAVYKSFCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEE 1032 (1435)
Q Consensus 965 pf~~~~~F~~~f~~pi~~~~------------~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eE 1032 (1435)
.+++.++|+++|.+||..+. ..+...|+.+|..|+-||+...+. +.||.+.+.++.|.+|.-|
T Consensus 491 yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLvr~s~iQ 565 (1387)
T KOG1016|consen 491 YLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILVRKSQIQ 565 (1387)
T ss_pred ccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEEeHHHHH
Confidence 99999999999999998763 122456899999999999987654 4799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHh-
Q 000537 1033 RDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCL- 1111 (1435)
Q Consensus 1033 r~~Y~~L~~~s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~l- 1111 (1435)
|++|..+.-...+. .+..+ ....|-|.+.--..++.+||..+-.+- .. +++..+....+....
T Consensus 566 R~LY~~Fm~d~~r~---~~~~~---~~~~NPLkAF~vCcKIWNHPDVLY~~l----~k------~~~a~e~dl~vee~~~ 629 (1387)
T KOG1016|consen 566 RQLYRNFMLDAKRE---IAANN---DAVFNPLKAFSVCCKIWNHPDVLYRLL----EK------KKRAEEDDLRVEEMKF 629 (1387)
T ss_pred HHHHHHHHHHHHHh---hcccc---ccccChHHHHHHHHHhcCChHHHHHHH----HH------hhhhhhhhhhHHHHhh
Confidence 99999875333222 11111 122245667777788889997653210 00 001111111111110
Q ss_pred hhhcccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCC-
Q 000537 1112 EASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDY- 1190 (1435)
Q Consensus 1112 e~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~- 1190 (1435)
....+.|+--+.++.++-.+. .+-..+.+...... ......|..+
T Consensus 630 ag~~~~~~P~~~~~~~~s~~l--------------------------------aSs~~k~~n~t~kp--~~s~~~p~f~e 675 (1387)
T KOG1016|consen 630 AGLQQQQSPFNSIPSNPSTPL--------------------------------ASSTSKSANKTKKP--RGSKKAPKFDE 675 (1387)
T ss_pred hcccccCCCCCCCCCCCCCcc--------------------------------cchhhhhhcccCCc--ccCcCCCCccc
Confidence 111223433333222211000 00000110000000 0000001100
Q ss_pred CCcccccCCccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCC-cccccchhhHHHHh
Q 000537 1191 SDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGD-TLDNISDENEKIAA 1269 (1435)
Q Consensus 1191 s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~L~~l~~~~~~~~~ 1269 (1435)
.+.++... + +...+++..... ..+. ...+.- .+..+.
T Consensus 676 e~~e~~~y---------~---~w~~el~~nYq~--------gvLe--------------n~pk~V~~~~~~d-------- 713 (1387)
T KOG1016|consen 676 EDEEVEKY---------S---DWTFELFENYQE--------GVLE--------------NGPKIVISLEILD-------- 713 (1387)
T ss_pred ccccccch---------h---hHHHHHHhhhhc--------cccc--------------CCCceEEEEeeec--------
Confidence 01111110 0 233444443210 0000 000000 011111
Q ss_pred hccccccccCCCeEEEEcccHHHHHHHHHHHHhcC------------------CcEEecCCCCCHHHHHHHHHHHhcCCC
Q 000537 1270 KCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSS------------------IQYRRLDGTMSVFARDKAVKDFNTLPE 1331 (1435)
Q Consensus 1270 ~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~~g------------------I~~~rldGsms~~qR~~aI~~Fn~d~~ 1331 (1435)
....-++|+|||||....||+|++.|.+.. +.|++++|.++..+|+++|++||..+.
T Consensus 714 -----es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~ 788 (1387)
T KOG1016|consen 714 -----ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPG 788 (1387)
T ss_pred -----cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCC
Confidence 112368999999999999999999998653 348999999999999999999999888
Q ss_pred cc-EEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q 000537 1332 VS-VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVAS 1410 (1435)
Q Consensus 1332 v~-VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~ 1410 (1435)
+. .+|+|+++|..|+||..|+++|++|..|||....||++|++|+||+++++||||++.+|+|.+|+++|.+|+.|.+.
T Consensus 789 lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdR 868 (1387)
T KOG1016|consen 789 LSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDR 868 (1387)
T ss_pred ceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhh
Confidence 77 78889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCcCccccCCCHHHHHHhhc
Q 000537 1411 AFGEDETGGQQTRLTVDDLNYLFM 1434 (1435)
Q Consensus 1411 ~lg~d~~~~~~~~lt~~DL~~LF~ 1434 (1435)
++++.- -...++..||..|.+
T Consensus 869 vVDd~n---p~an~s~Ke~enLl~ 889 (1387)
T KOG1016|consen 869 VVDDAN---PDANISQKELENLLM 889 (1387)
T ss_pred hhcccC---ccccccHHHHHHHhh
Confidence 997653 346788999988865
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-52 Score=476.43 Aligned_cols=417 Identities=29% Similarity=0.372 Sum_probs=320.2
Q ss_pred cCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccccccc
Q 000537 666 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 745 (1435)
Q Consensus 666 ~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 745 (1435)
--.|+|+|++||.+.++|. +..+||||||||||+||||.+...+.+
T Consensus 196 vs~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyraE---------------------------- 241 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYRAE---------------------------- 241 (689)
T ss_pred HHhhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHhhc----------------------------
Confidence 3459999999999999752 236999999999999999998775432
Q ss_pred ccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeC-CCCCCCccc
Q 000537 746 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHG-SSRTKDPCE 824 (1435)
Q Consensus 746 ~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG-~~r~k~~~~ 824 (1435)
+|.|||||+++...|++++.+|++.-. .+.+..+ ..+..+.-
T Consensus 242 ----------------------------------wplliVcPAsvrftWa~al~r~lps~~--pi~vv~~~~D~~~~~~- 284 (689)
T KOG1000|consen 242 ----------------------------------WPLLIVCPASVRFTWAKALNRFLPSIH--PIFVVDKSSDPLPDVC- 284 (689)
T ss_pred ----------------------------------CcEEEEecHHHhHHHHHHHHHhccccc--ceEEEecccCCccccc-
Confidence 468999999999999999999998432 2333333 22222111
Q ss_pred ccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcc
Q 000537 825 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 904 (1435)
Q Consensus 825 L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL 904 (1435)
..--|+|++|+.+...- ..|
T Consensus 285 -t~~~v~ivSye~ls~l~-----------------------------------------------------------~~l 304 (689)
T KOG1000|consen 285 -TSNTVAIVSYEQLSLLH-----------------------------------------------------------DIL 304 (689)
T ss_pred -cCCeEEEEEHHHHHHHH-----------------------------------------------------------HHH
Confidence 22359999999986320 114
Q ss_pred cccCccEEEEcCCcccCChhhHHHHHHHhc--ccCcEEEEecccCCCChhhhhhhccccccccccchHHHHhhhcccCCC
Q 000537 905 AKVGWFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 982 (1435)
Q Consensus 905 ~~i~W~rVILDEAH~IKN~~T~~skAl~~L--~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~~f~~pi~~ 982 (1435)
..-+|..||+||+|++|+.++++.+++..+ .++|.++|||||-..++.|||.+++.+.+..|.++.+|..+|+.--.-
T Consensus 305 ~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~v 384 (689)
T KOG1000|consen 305 KKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQV 384 (689)
T ss_pred hcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCcccc
Confidence 445689999999999999999999999887 789999999999999999999999999999999999999888753211
Q ss_pred ------CchhhHHHHHHHH-hHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHccc
Q 000537 983 ------NPVKGYKKLQAVL-KTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGT 1055 (1435)
Q Consensus 983 ------~~~~~~~~L~~lL-~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~ 1055 (1435)
..-....+|..+| +.+|+||+|.+|+. +||||..+++.+ .+..+-+..+.+...+ ++ ++
T Consensus 385 r~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv~~-~~gr~da~~~~lv~~a-------~~-~t 450 (689)
T KOG1000|consen 385 RFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVVYV-SGGRIDARMDDLVKAA-------AD-YT 450 (689)
T ss_pred ceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEEEE-cCCccchHHHHHHHHh-------hh-cc
Confidence 1223466777776 56899999999997 899996555544 3333322222222111 11 11
Q ss_pred ccchH-HHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCCCCCccchhcccC
Q 000537 1056 VKQNY-VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1134 (1435)
Q Consensus 1056 ~~~~~-~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~Cg 1134 (1435)
..... .+-+.+++..++
T Consensus 451 ~~~~~e~~~~~l~l~y~~-------------------------------------------------------------- 468 (689)
T KOG1000|consen 451 KVNSMERKHESLLLFYSL-------------------------------------------------------------- 468 (689)
T ss_pred hhhhhhhhhHHHHHHHHH--------------------------------------------------------------
Confidence 00000 000000000000
Q ss_pred cccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccchHHHHH
Q 000537 1135 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1214 (1435)
Q Consensus 1135 HvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~al 1214 (1435)
..-.|+.++
T Consensus 469 -----------------------------------------------------------------------tgiaK~~av 477 (689)
T KOG1000|consen 469 -----------------------------------------------------------------------TGIAKAAAV 477 (689)
T ss_pred -----------------------------------------------------------------------hcccccHHH
Confidence 012455666
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHH
Q 000537 1215 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1294 (1435)
Q Consensus 1215 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~Ld 1294 (1435)
.+.|-...- + ..+++.|++||+.+..+||
T Consensus 478 ~eyi~~~~~---------------------------------l------------------~d~~~~KflVFaHH~~vLd 506 (689)
T KOG1000|consen 478 CEYILENYF---------------------------------L------------------PDAPPRKFLVFAHHQIVLD 506 (689)
T ss_pred HHHHHhCcc---------------------------------c------------------ccCCCceEEEEehhHHHHH
Confidence 666654100 0 0127899999999999999
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhh
Q 000537 1295 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1374 (1435)
Q Consensus 1295 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRah 1374 (1435)
-|+..+.++++.++||||+++..+|+.+++.|+.+.+++|-|+|..|+|+||+|++|+.|+|.+++|||....||.||+|
T Consensus 507 ~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaH 586 (689)
T KOG1000|consen 507 TIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAH 586 (689)
T ss_pred HHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000537 1375 RIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1411 (1435)
Q Consensus 1375 RIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~ 1411 (1435)
|+|||..|.|++|++++|+||.++.+.++|...+.++
T Consensus 587 RiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 587 RIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred hccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988766
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.2e-51 Score=526.89 Aligned_cols=420 Identities=20% Similarity=0.283 Sum_probs=314.4
Q ss_pred ccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccc
Q 000537 665 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 744 (1435)
Q Consensus 665 l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 744 (1435)
..+.|+|||...+.+++++.. .+.|||||||||||++|++++.....
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~~-----~R~LLADEvGLGKTIeAglil~~l~~---------------------------- 195 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRHA-----PRVLLADEVGLGKTIEAGMIIHQQLL---------------------------- 195 (956)
T ss_pred CCCCCCHHHHHHHHHHhhccC-----CCEEEEeCCcCcHHHHHHHHHHHHHH----------------------------
Confidence 356799999999988876632 45799999999999999777643210
Q ss_pred cccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC----C
Q 000537 745 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 820 (1435)
Q Consensus 745 ~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~----k 820 (1435)
.+..+++|||||++|+.||..|+.++|. +.+.++.+..-. .
T Consensus 196 -------------------------------~g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~ 240 (956)
T PRK04914 196 -------------------------------TGRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHD 240 (956)
T ss_pred -------------------------------cCCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccc
Confidence 1234679999999999999999998875 556666554311 1
Q ss_pred CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000537 821 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 900 (1435)
Q Consensus 821 ~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~ 900 (1435)
....+..+++||+||+.+...- ..
T Consensus 241 ~~~pf~~~~~vI~S~~~l~~~~---------~~----------------------------------------------- 264 (956)
T PRK04914 241 ADNPFETEQLVICSLDFLRRNK---------QR----------------------------------------------- 264 (956)
T ss_pred ccCccccCcEEEEEHHHhhhCH---------HH-----------------------------------------------
Confidence 1234557899999999986310 00
Q ss_pred cCcccccCccEEEEcCCcccCC---hhhHHHHHHHhc--ccCcEEEEecccCCCChhhhhhhccccccccccchHHHHhh
Q 000537 901 AGPLAKVGWFRVVLDEAQSIKN---HRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 975 (1435)
Q Consensus 901 ~~pL~~i~W~rVILDEAH~IKN---~~T~~skAl~~L--~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~~ 975 (1435)
...+....|++|||||||++|+ ..|+.++++..| +++++++|||||++|++.|+|++|+||+|+.|.++..|...
T Consensus 265 ~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e 344 (956)
T PRK04914 265 LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEE 344 (956)
T ss_pred HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHH
Confidence 0124556899999999999995 356778888888 67899999999999999999999999999999999999764
Q ss_pred hcc--cC--------CCC--chhhHHHH-------------------------------HHHH-----hHhhheeccccc
Q 000537 976 IKV--PI--------SKN--PVKGYKKL-------------------------------QAVL-----KTIMLRRTKGTL 1007 (1435)
Q Consensus 976 f~~--pi--------~~~--~~~~~~~L-------------------------------~~lL-----~~~mLRRtK~dV 1007 (1435)
... |+ ... .......| +.++ ..+|+|+++.++
T Consensus 345 ~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v 424 (956)
T PRK04914 345 QQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAV 424 (956)
T ss_pred HHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhh
Confidence 431 11 000 00111111 1121 257899999987
Q ss_pred cCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHccCcccccccCchh
Q 000537 1008 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1087 (1435)
Q Consensus 1008 ~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~~ 1087 (1435)
. .+|++..+.+.++++++.+..+... .. ..+++ +.+|..+.
T Consensus 425 ~------~fp~R~~~~~~l~~~~~y~~~~~~~---~~-----------------------~~~~~-~l~pe~~~------ 465 (956)
T PRK04914 425 K------GFPKRELHPIPLPLPEQYQTAIKVS---LE-----------------------ARARD-MLYPEQIY------ 465 (956)
T ss_pred c------CCCcCceeEeecCCCHHHHHHHHHh---HH-----------------------HHHHh-hcCHHHHH------
Confidence 5 4899999999999987654443210 00 01111 11221000
Q ss_pred hhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccch
Q 000537 1088 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1167 (1435)
Q Consensus 1088 ~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~v 1167 (1435)
..++.
T Consensus 466 ---------------------~~~~~------------------------------------------------------ 470 (956)
T PRK04914 466 ---------------------QEFED------------------------------------------------------ 470 (956)
T ss_pred ---------------------HHHhh------------------------------------------------------
Confidence 00000
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccchHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCC
Q 000537 1168 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 1247 (1435)
Q Consensus 1168 fs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 1247 (1435)
.......++|++.++++|+.+
T Consensus 471 ---------------------------------~~~~~~~d~Ki~~L~~~L~~~-------------------------- 491 (956)
T PRK04914 471 ---------------------------------NATWWNFDPRVEWLIDFLKSH-------------------------- 491 (956)
T ss_pred ---------------------------------hhhccccCHHHHHHHHHHHhc--------------------------
Confidence 000111368999999888762
Q ss_pred CCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHH-HhcCCcEEecCCCCCHHHHHHHHHHH
Q 000537 1248 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDF 1326 (1435)
Q Consensus 1248 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~F 1326 (1435)
.++|+|||+++..+++.|++.| ...|+++..|+|+|+..+|+++++.|
T Consensus 492 -------------------------------~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 492 -------------------------------RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred -------------------------------CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 4689999999999999999999 56799999999999999999999999
Q ss_pred hcC-CCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000537 1327 NTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1405 (1435)
Q Consensus 1327 n~d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~ 1405 (1435)
+++ ++++|||+ +.+||+||||+.|++||+||+||||..++|||||+||+||+++|.||+++.++|+|++|+++..+|.
T Consensus 541 ~~~~~~~~VLIs-TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 541 ADEEDGAQVLLC-SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hcCCCCccEEEe-chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 985 36888875 5999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhC
Q 000537 1406 EMVASAFG 1413 (1435)
Q Consensus 1406 ~l~~~~lg 1413 (1435)
++++...+
T Consensus 620 ~ife~~~~ 627 (956)
T PRK04914 620 NAFEHTCP 627 (956)
T ss_pred CceeccCC
Confidence 76655543
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-50 Score=502.35 Aligned_cols=258 Identities=32% Similarity=0.580 Sum_probs=200.8
Q ss_pred CCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--CcccccCCCEEEEechhhhcccCCCCCCCchhHHH
Q 000537 778 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEE 855 (1435)
Q Consensus 778 p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k--~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~e 855 (1435)
-.|+||||||.+++.||-+||.+|++ ..++|+.|.|..... .+.++.+||||+|||++++.|+... .
T Consensus 419 ~tgaTLII~P~aIl~QW~~EI~kH~~--~~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~ht----e----- 487 (1394)
T KOG0298|consen 419 ETGATLIICPNAILMQWFEEIHKHIS--SLLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHT----E----- 487 (1394)
T ss_pred ecCceEEECcHHHHHHHHHHHHHhcc--ccceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcc----c-----
Confidence 35799999999999999999999987 347999999987543 4578899999999999999887431 0
Q ss_pred HhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcc
Q 000537 856 KMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR 935 (1435)
Q Consensus 856 k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~ 935 (1435)
+ . +..|..+-+++. -...+||..+.||||||||||.+....|+.++++..|.
T Consensus 488 ------~-~---------------~~~R~lR~qsr~------~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 488 ------D-F---------------GSDRQLRHQSRY------MRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLH 539 (1394)
T ss_pred ------c-c---------------CChhhhhcccCC------CCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhh
Confidence 0 0 011111111111 12468999999999999999999999999999999999
Q ss_pred cCcEEEEecccCCCChhhhhhhccccccccccchHHHHhhhcccCCCCchhhHHHHHHHHhHhhheeccccccCCCCccC
Q 000537 936 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 1015 (1435)
Q Consensus 936 A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~~f~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~ 1015 (1435)
+.+|||+||||||+ ++||+++|.||+..||+....|...+..++.+. .....+.++++..+.|+.|-+|.+. +.
T Consensus 540 ~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~e---l~ 613 (1394)
T KOG0298|consen 540 AINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHE---LG 613 (1394)
T ss_pred hhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHH---hC
Confidence 99999999999999 999999999999999999999999988776554 3445788999999999999888663 67
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHH----HHHHHHHHHHHH---------cccccchHHHHHHHHHHHHHHccCcccc
Q 000537 1016 LPPKVIMLKQVDFTDEERDFYSQLE----INSRDQFKEYAA---------AGTVKQNYVNILLMLLRLRQACDHPLLV 1080 (1435)
Q Consensus 1016 LPpk~e~vv~v~lS~eEr~~Y~~L~----~~s~~~~k~~~~---------~g~~~~~~~~IL~~LlrLRq~c~HP~Lv 1080 (1435)
+||..+.+....+++.|-.+|+... .+++..+..... ++........++..++||||+|+||...
T Consensus 614 ~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 614 LPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred CCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHHHhhcccccc
Confidence 9999888888888887777765433 333333222221 1112234556888999999999999653
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=8.8e-43 Score=401.87 Aligned_cols=291 Identities=40% Similarity=0.653 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHhh------ccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccccccc
Q 000537 672 HQRIALSWMVQKE------TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 745 (1435)
Q Consensus 672 hQk~gl~wMl~rE------~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 745 (1435)
||++||.||+.++ ......+|||||||||+|||+++|+++......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~---------------------------- 52 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNE---------------------------- 52 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHC----------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhc----------------------------
Confidence 8999999999998 111244899999999999999999999742210
Q ss_pred ccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC--CCCCcc
Q 000537 746 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPC 823 (1435)
Q Consensus 746 ~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~--r~k~~~ 823 (1435)
......+++|||||++++.||..|+.+|+. +..+++++|+|.. +.....
T Consensus 53 ----------------------------~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 53 ----------------------------FPQRGEKKTLIVVPSSLLSQWKEEIEKWFD-PDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp ----------------------------CTTSS-S-EEEEE-TTTHHHHHHHHHHHSG-T-TS-EEEESSSCHHHHTTSS
T ss_pred ----------------------------cccccccceeEeeccchhhhhhhhhccccc-ccccccccccccccccccccc
Confidence 000112359999999999999999999985 3368999999987 333455
Q ss_pred cccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCc
Q 000537 824 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 903 (1435)
Q Consensus 824 ~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~p 903 (1435)
....++++|+||+.+..... ......
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~------------------------------------------------------~~~~~~ 129 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARK------------------------------------------------------KKDKED 129 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TS------------------------------------------------------THTTHH
T ss_pred ccccceeeeccccccccccc------------------------------------------------------cccccc
Confidence 67899999999999961000 000123
Q ss_pred ccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHHHHhhhcccCCCC
Q 000537 904 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 983 (1435)
Q Consensus 904 L~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~~f~~pi~~~ 983 (1435)
+..++|++||+||||.+||..+..++++..|++.+||+|||||++|++.|||++++||.++++.+...|.+.+..+....
T Consensus 130 l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~ 209 (299)
T PF00176_consen 130 LKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKEN 209 (299)
T ss_dssp HHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTH
T ss_pred cccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhcccc
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999886663344
Q ss_pred chhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHH
Q 000537 984 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1063 (1435)
Q Consensus 984 ~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~~~~I 1063 (1435)
......+|+.+++.+++||+++++.. .||+..+.++.++|+++|+++|+.+....+..++... +........+
T Consensus 210 ~~~~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~ 282 (299)
T PF00176_consen 210 SYENIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSL 282 (299)
T ss_dssp HHHHHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHH
T ss_pred ccccccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHH
Confidence 45667899999999999999999843 7999999999999999999999988766554433222 2344677889
Q ss_pred HHHHHHHHHHccCcccc
Q 000537 1064 LLMLLRLRQACDHPLLV 1080 (1435)
Q Consensus 1064 L~~LlrLRq~c~HP~Lv 1080 (1435)
+..+.+|||+|+||.|+
T Consensus 283 ~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 283 LQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHHHHH-THHC
T ss_pred HHHHHHHHHHhCCcccC
Confidence 99999999999999874
No 21
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=379.06 Aligned_cols=398 Identities=26% Similarity=0.397 Sum_probs=289.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccc
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 746 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 746 (1435)
..|.+||.+|++|+......+ --+|||||||||||+++|++.......
T Consensus 294 g~L~~~qleGln~L~~~ws~~---~~~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG---VDAILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccC---CCcccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 469999999999999877644 348999999999999998887543211
Q ss_pred cccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 000537 747 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 826 (1435)
Q Consensus 747 ~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~ 826 (1435)
....+|.||++|.+.+.+|..|+..|.+ .+.+..|+|....+......
T Consensus 342 -----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirep 389 (696)
T KOG0383|consen 342 -----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREP 389 (696)
T ss_pred -----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhcc
Confidence 1123578999999999999999999976 68888899976543211000
Q ss_pred C---CC-EEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccC
Q 000537 827 K---FD-VVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 902 (1435)
Q Consensus 827 ~---~D-VVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~ 902 (1435)
. -| -+.+.-.+.. .+.....+... .-..-...+...+
T Consensus 390 e~s~ed~~~~~~~~i~~-----------------------------------~~~~s~~k~~v----l~~s~~~~~~~~~ 430 (696)
T KOG0383|consen 390 EFSFEDSSIKSSPKISE-----------------------------------MKTESSAKFHV----LLPSYETIEIDQS 430 (696)
T ss_pred cccccccccccCCcccc-----------------------------------ccchhhccccc----CCCchhhcccCHH
Confidence 0 00 0000000000 00000000000 0000001122345
Q ss_pred cccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccccchHHHHhhhcccCCC
Q 000537 903 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 982 (1435)
Q Consensus 903 pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~~f~~pi~~ 982 (1435)
.+..+.|..+|+||+|++||..+...+.+..-...++++|||||.+|++++|+++|+||.++.|.+..+|.+.|.. .
T Consensus 431 il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d---~ 507 (696)
T KOG0383|consen 431 ILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD---I 507 (696)
T ss_pred HHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch---h
Confidence 6889999999999999999999999999888899999999999999999999999999999999999999887753 2
Q ss_pred CchhhHHHHHHHHhHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccchHHH
Q 000537 983 NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVN 1062 (1435)
Q Consensus 983 ~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~~~~ 1062 (1435)
......++|+.++.+.|+||.|.++++ ..|+|++.++.+.|++-|++.|+.++...-..+.. | .+...
T Consensus 508 ~~~~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~----~---~~~~s 575 (696)
T KOG0383|consen 508 SCEEQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA----G---VHQYS 575 (696)
T ss_pred hHHHHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh----c---chhHH
Confidence 234567899999999999999999998 59999999999999999999999887554333322 2 23345
Q ss_pred HHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhccHHHHHHHHHHhhhhcccccCCCCCCccchhcccCcccchhhh
Q 000537 1063 ILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCI 1142 (1435)
Q Consensus 1063 IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci 1142 (1435)
++..++.||+.|+||++...... .... ..++.+.
T Consensus 576 ~~n~~mel~K~~~hpy~~~~~e~------------~~~~--~~~~~~~-------------------------------- 609 (696)
T KOG0383|consen 576 LLNIVMELRKQCNHPYLSPLEEP------------LEEN--GEYLGSA-------------------------------- 609 (696)
T ss_pred HHHHHHHHHHhhcCcccCccccc------------cccc--hHHHHHH--------------------------------
Confidence 67889999999999988743110 0000 0000000
Q ss_pred hhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCccccchHHHHHHHHHHhhc
Q 000537 1143 CERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLA 1222 (1435)
Q Consensus 1143 ~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~ 1222 (1435)
....+.|+-.+...++++
T Consensus 610 -------------------------------------------------------------l~k~~~k~~~l~~~~~~l- 627 (696)
T KOG0383|consen 610 -------------------------------------------------------------LIKASGKLTLLLKMLKKL- 627 (696)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHHH-
Confidence 000134444444444432
Q ss_pred CCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEcccHHHHHHHHHHHHh
Q 000537 1223 KPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1302 (1435)
Q Consensus 1223 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSQ~t~~LdlLe~~L~~ 1302 (1435)
+..++||+||+|++.+||+|+.++..
T Consensus 628 ------------------------------------------------------~~~ghrvl~~~q~~~~ldlled~~~~ 653 (696)
T KOG0383|consen 628 ------------------------------------------------------KSSGHRVLIFSQMIHMLDLLEDYLTY 653 (696)
T ss_pred ------------------------------------------------------HhcchhhHHHHHHHHHHHHhHHHHhc
Confidence 33789999999999999999999999
Q ss_pred cCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccc
Q 000537 1303 SSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLG 1345 (1435)
Q Consensus 1303 ~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkAGg~G 1345 (1435)
.+ .|.|+||..+...|++++++||.. ..-.++|+|++|||+|
T Consensus 654 ~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 654 EG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99 999999999999999999999963 5678999999999988
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.7e-34 Score=355.34 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=102.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.++|+|||++++..++.+.+.| +. ..++|.++..+|.+++++|+..+.+.||++| ++|++|+||..|++||+++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeC
Confidence 5789999999999988888877 33 3489999999999999999986788998877 9999999999999999999
Q ss_pred CCC-CcChHHHHHHhhhccCCCCc-----EEEEEEEeCCCHHHHHHH
Q 000537 1359 LWW-NPTTEDQAIDRAHRIGQTRP-----VSVLRLTVKNTVEDRILA 1399 (1435)
Q Consensus 1359 p~W-NPa~e~QAIGRahRIGQtr~-----V~VyrLi~kdTIEErIle 1399 (1435)
+++ ++..+.||+||+.|.+..+. .++|.|+.++|.|+..-.
T Consensus 569 ~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 569 SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 886 99999999999999987543 799999999999987753
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=4.7e-29 Score=324.85 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=112.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCC--------CCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT--------MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1350 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGs--------ms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1350 (1435)
++.|+|||+++..+++.|.+.|...|+++..++|. |+..+|.+++++|++ ++..||+ ++.++++|+|++.
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~vLv-aT~~~~eGldi~~ 441 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFNVLV-STSVAEEGLDIPS 441 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcCCCccc
Confidence 57899999999999999999999999999999987 899999999999998 6788877 6689999999999
Q ss_pred cCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000537 1351 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1408 (1435)
Q Consensus 1351 An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~ 1408 (1435)
+++||+|||+|||....|++||++|.|+ +.||.|+.++|+||.++....+|.+.+
T Consensus 442 ~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 442 VDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9999999999999999998888877765 678999999999999887766666554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.4e-22 Score=237.37 Aligned_cols=459 Identities=18% Similarity=0.176 Sum_probs=286.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccc
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 746 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 746 (1435)
++-+.||..-++-.+.+ ..+++-.+|||||+.|+.+++.....
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~~----------------------------- 56 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLRW----------------------------- 56 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHHh-----------------------------
Confidence 45678999988888764 25899999999999997777643211
Q ss_pred cccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Cccc
Q 000537 747 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE 824 (1435)
Q Consensus 747 ~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k-~~~~ 824 (1435)
-.+.+|+++|+. |+.|-.+-+.+.+. -+.-.+..+.|.-+.. ....
T Consensus 57 -------------------------------~~~kvlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 57 -------------------------------FGGKVLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREEL 104 (542)
T ss_pred -------------------------------cCCeEEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHH
Confidence 012589999986 88999999988776 4457888999987765 3455
Q ss_pred ccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcc
Q 000537 825 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 904 (1435)
Q Consensus 825 L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL 904 (1435)
+.+..|++.|.+++.+++. .+.+
T Consensus 105 w~~~kVfvaTPQvveNDl~---------------------------------------------------------~Gri 127 (542)
T COG1111 105 WAKKKVFVATPQVVENDLK---------------------------------------------------------AGRI 127 (542)
T ss_pred HhhCCEEEeccHHHHhHHh---------------------------------------------------------cCcc
Confidence 6789999999999987542 1223
Q ss_pred cccCccEEEEcCCcccCChhh--HHHHHHHhcccC-cEEEEecccCCCChhhhhhhccccccccccchHHHHhhhcccCC
Q 000537 905 AKVGWFRVVLDEAQSIKNHRT--QVARACWGLRAK-RRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 981 (1435)
Q Consensus 905 ~~i~W~rVILDEAH~IKN~~T--~~skAl~~L~A~-~RwlLTGTPIqN~l~DLyslL~FLrp~pf~~~~~F~~~f~~pi~ 981 (1435)
.--.+.+||+||||+.-+..+ ..++...+-..+ +.++|||||= ++.+.+...+.=|+.+
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe----------------- 189 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIE----------------- 189 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcc-----------------
Confidence 334567899999999765333 333333333333 5789999993 2333333333322221
Q ss_pred CCchhhHHHHHHHHhHhhheeccc-cccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcccccch-
Q 000537 982 KNPVKGYKKLQAVLKTIMLRRTKG-TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN- 1059 (1435)
Q Consensus 982 ~~~~~~~~~L~~lL~~~mLRRtK~-dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~L~~~s~~~~k~~~~~g~~~~~- 1059 (1435)
.+.+|.-.+ ||.. .+-++..+.++|+++++-.++-+.+..-.+..++.+.+.|-....
T Consensus 190 ---------------~vevrTE~d~DV~~-----Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 190 ---------------KVEVRTEEDPDVRP-----YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred ---------------eEEEecCCCccHHH-----hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 122222111 1111 355677889999999998888888877777777777777644322
Q ss_pred ---HHHHHHHHHHHHHHccCcccccccCchhhhhh--HHHHHhhccH------HH-HHHHHHHhhhhcccccCCCCCCcc
Q 000537 1060 ---YVNILLMLLRLRQACDHPLLVKGFDSNSLLRS--SVEMAKKLPQ------ER-QMYLLNCLEASLAICGICNDPPED 1127 (1435)
Q Consensus 1060 ---~~~IL~~LlrLRq~c~HP~Lv~~~~~~~~~~~--s~e~a~~l~~------e~-~~~ll~~le~~~~~C~iC~d~~e~ 1127 (1435)
...++.+. ..+..-. +. . +...++. ....+.++.. -. ...+.+.++..
T Consensus 250 ~~~~kdl~~~~-~~~~~~a-~~----~-~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l------------- 309 (542)
T COG1111 250 PVSKKDLLELR-QIRLIMA-KN----E-DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKL------------- 309 (542)
T ss_pred cccHhHHHHHH-HHHHHhc-cC----c-cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-------------
Confidence 22333333 1221111 10 0 1111110 0111111110 00 00011111100
Q ss_pred chhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCccCCcccc
Q 000537 1128 AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYN 1207 (1435)
Q Consensus 1128 ~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~ 1207 (1435)
-++.-. .. ......+..+.-|.++.... -........
T Consensus 310 --------------~e~~~~-~~-----sk~a~~l~~d~~~~~al~~~-----------------------~~~~~~~v~ 346 (542)
T COG1111 310 --------------EEEATK-GG-----SKAAKSLLADPYFKRALRLL-----------------------IRADESGVE 346 (542)
T ss_pred --------------HHHhcc-cc-----hHHHHHHhcChhhHHHHHHH-----------------------HHhccccCC
Confidence 000000 00 00000000000111110000 000122335
Q ss_pred chHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhccccccccCCCeEEEEc
Q 000537 1208 SSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFS 1287 (1435)
Q Consensus 1208 SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFS 1287 (1435)
.+|++.+.+++++..+ +.++.++|||+
T Consensus 347 HPKl~~l~eilke~~~-----------------------------------------------------k~~~~RvIVFT 373 (542)
T COG1111 347 HPKLEKLREILKEQLE-----------------------------------------------------KNGDSRVIVFT 373 (542)
T ss_pred CccHHHHHHHHHHHHh-----------------------------------------------------cCCCceEEEEe
Confidence 7888888888887532 12568999999
Q ss_pred ccHHHHHHHHHHHHhcCCcEE-ecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1288 QWTKMLDLLEASLKDSSIQYR-RLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1288 Q~t~~LdlLe~~L~~~gI~~~-rldG--------sms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
+|+.+++.|..+|...++... ++-| +|++++..++|++|+. ++..||+ +|..|-+||++...+-||+||
T Consensus 374 ~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-Ge~nVLV-aTSVgEEGLDIp~vDlVifYE 451 (542)
T COG1111 374 EYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-GEYNVLV-ATSVGEEGLDIPEVDLVIFYE 451 (542)
T ss_pred hhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-CCceEEE-EcccccccCCCCcccEEEEec
Confidence 999999999999999988764 5544 5999999999999999 8999998 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVAS 1410 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~ 1410 (1435)
|.=+|-+..||.||.+| ++.=.||-|+++||-|+.-+....+|.+.+..
T Consensus 452 pvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e 500 (542)
T COG1111 452 PVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIE 500 (542)
T ss_pred CCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 99999999999998888 47778899999999998887777777655433
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=4.1e-22 Score=243.11 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=107.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.+++||+......+.|...|...|+ ...++|.++..+|.+++++|+..+ ..||+ +.+.+.+|+++..|+.+|++.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~lv-~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKVLV-TVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCEEE-EeeeccceecCCCCcEEEEeC
Confidence 367999999999999999999999988 889999999999999999999944 66666 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhcc-CCCCc--EEEEEEEeCCCHHHHHHHHHHH
Q 000537 1359 LWWNPTTEDQAIDRAHRI-GQTRP--VSVLRLTVKNTVEDRILALQQK 1403 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRI-GQtr~--V~VyrLi~kdTIEErIlelq~k 1403 (1435)
|.=++..+.|++||+.|. .++.. +.+|-++.+++.+..+.+....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 999999999999999994 44444 7788888889888877765553
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=3.4e-22 Score=248.03 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=103.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.++|||+..+.+++.|.+.|+..|+++..++|+|+.++|.++++.|+. +...|||.|.+..++|+++...++||++.
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEec
Confidence 45788999999999999999999999999999999999999999999986 77788998889999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc-EEEEEEEeCCCH
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRP-VSVLRLTVKNTV 1393 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~-V~VyrLi~kdTI 1393 (1435)
|.-+.....|++||++|.|..++ +.||.|+-.-.+
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 99999999999999999987664 899998865443
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=5.6e-20 Score=212.24 Aligned_cols=112 Identities=24% Similarity=0.270 Sum_probs=95.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.|+||||...-.|...+..|.+ + .|.|.++..+|-+++++|+.++.+.-+++| ++|...++|..|+.+|-+.
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~K---p--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLGK---P--FIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcCC---c--eEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEc
Confidence 689999999988777666655543 3 578999999999999999999999988888 9999999999999999999
Q ss_pred CCC-CcChHHHHHHhhhccCCCC----cEEEEEEEeCCCHHHH
Q 000537 1359 LWW-NPTTEDQAIDRAHRIGQTR----PVSVLRLTVKNTVEDR 1396 (1435)
Q Consensus 1359 p~W-NPa~e~QAIGRahRIGQtr----~V~VyrLi~kdTIEEr 1396 (1435)
.+. .-..|+||.||+-|--... .++.|-|+.+||.|-.
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 886 5568999999999965322 3899999999998853
No 28
>PTZ00110 helicase; Provisional
Probab=99.80 E-value=1.4e-17 Score=208.75 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=99.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.|+|||++....++.|.+.|...|++...++|.++.++|.+++++|++ +.++||| +|.+++.|||+..+++||++|
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~ILV-aTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPIMI-ATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcEEE-EcchhhcCCCcccCCEEEEeC
Confidence 35799999999999999999999999999999999999999999999998 7788876 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
+++++....||+||+.|.|.+-. ++.|+.++
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999998754 45556655
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.79 E-value=2.8e-17 Score=202.67 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=98.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.++|||+......+.+...|...++....++|.|+..+|+.+++.|++ +.++||| +|.+++.|||+...++||++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~vLV-aTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSVLV-ATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcEEE-EecccccccchhcCCeEEEec
Confidence 34689999999999999999999999999999999999999999999997 8888888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
++.++....||+||+.|.|+.- ..+.|+..+
T Consensus 319 ~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 319 LARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999999864 345566554
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.78 E-value=3.6e-17 Score=200.22 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=96.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
...++|||+.....++.|...|...|+....++|.|+..+|..+++.|++ +.++||| +|.+++.|||+...++||++|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~vLV-aTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNVLV-ATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCccCCCCCEEEEEC
Confidence 34789999999999999999999999999999999999999999999997 8898888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEE
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSV 1384 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~V 1384 (1435)
+++++....|++||+.|.|.+-.+.+
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999998765443
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.76 E-value=6.5e-17 Score=199.79 Aligned_cols=105 Identities=22% Similarity=0.270 Sum_probs=96.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
++.+.|||+......+.+...|...|+....++|+|+.++|.+++++|.. +.++||+ +|.+.|.|+|+...++||+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~vLV-aT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQVVV-ATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCCcccceEEEEeC
Confidence 35677999999999999999999999999999999999999999999997 8899888 558999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1385 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~Vy 1385 (1435)
++.++....|++||++|.|+.....++
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999988764443
No 32
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.76 E-value=1.1e-16 Score=199.85 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=96.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
.++|||+.....++.|...|.. .|++...++|+++.++|..+++.|+. ++++||| +|.+++.|||+..+++||+||+
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~ILV-aTdvl~rGiDip~v~~VI~~d~ 445 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPVIV-ATGVLGRGVDLLRVRQVIIFDM 445 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCEEE-EecHhhccCCcccCCEEEEeCC
Confidence 5799999999999999999975 69999999999999999999999998 8888887 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
+.++....|++||++|.|.+- .++.|+..+
T Consensus 446 P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 446 PNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 999999999999999999754 444566544
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=7.1e-17 Score=197.00 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=98.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
..|+|||+.....++.|...|...|+....++|.++.++|.+++++|++ ++++||| +|.+++.|||+...++||+||+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~vLV-aTdv~~rGiDip~v~~VI~~d~ 332 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDILV-ATDVAARGLHIPAVTHVFNYDL 332 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcEEE-EechhhcCCCccccCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 8888888 5599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
++++....|++||+.|.|++-. ++.|+.+
T Consensus 333 P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 333 PDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred CCchhheEeccccccCCCCCee--EEEEeCH
Confidence 9999999999999999997754 4445654
No 34
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.76 E-value=1.2e-16 Score=196.87 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=97.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
..++|||+......+.|...|...++....++|.++.++|.++++.|++ +.++||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLV-aTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRVLV-ATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EccHHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 7888888 5689999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
+.++....|++||+.|.|++-.+ +.|+..+
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~a--i~l~~~~ 352 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEA--LSLVCVD 352 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeE--EEEecHH
Confidence 99999999999999999987643 3345443
No 35
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.75 E-value=7e-16 Score=190.89 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=95.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh---cCCcEEecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccC
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLN 1347 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~---~gI~~~rldG--------sms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLN 1347 (1435)
+..++|||+.++..++.|..+|.. .|++...+-| +|+..+..++++.|++ |++.||| +|..|-+||+
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~-G~~NvLV-ATSV~EEGLD 489 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD-GEINVLV-ATSVAEEGLD 489 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-CCccEEE-EecchhccCC
Confidence 567999999999999999999983 2444333333 6889999999999999 9999999 5599999999
Q ss_pred ccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000537 1348 MVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1411 (1435)
Q Consensus 1348 Lq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~ 1411 (1435)
...++-||-||..-||-.+.||.|| +| ++.=.++-|.. +.-+-.--..+..|+.+....
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~ 548 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQT 548 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999 66 55544444444 332222233344455544443
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.74 E-value=2.8e-16 Score=197.83 Aligned_cols=108 Identities=17% Similarity=0.324 Sum_probs=98.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.++|||+.....++.|.+.|...++....++|.|+..+|.++++.|++ ++++||| +|.+++.|||+...++||+||
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~VLV-aTdv~arGIDip~V~~VInyd 333 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEILV-ATDVAARGLHIDGVKYVYNYD 333 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EehhhhcCCCccCCCEEEEcC
Confidence 45789999999999999999999999999999999999999999999997 7888888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
++|++....|++||+.|.|.+-. .+.|+..
T Consensus 334 ~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 334 LPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred CCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 99999999999999999998754 3345544
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.74 E-value=2.8e-16 Score=190.12 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=97.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
..++|||+.....++.+...|...++....++|+++.++|..+++.|++ +.++||+ +|.+.++|+|+...++||++|+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~vLv-aT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRVLI-TTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-EcccccCCcCcccCCEEEEECC
Confidence 4689999999999999999999999999999999999999999999997 8888887 6689999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
+.++....|++||++|.|..- .++.|+.++
T Consensus 345 p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGRKG--VAINFVTPD 374 (401)
T ss_pred CCCHHHEeecccccccCCCCc--eEEEEEcHH
Confidence 999999999999999998654 455566554
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.73 E-value=4e-16 Score=198.00 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=94.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.++|||+......+.+...|...|+....++|+|+.++|.++++.|.. +.++||+ +|.+.|.|||+...++||++|
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~VLV-aT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCEEE-EechhhccCCCCCcCEEEEeC
Confidence 45789999999999999999999999999999999999999999999997 7788888 558899999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
++.+.....|++||++|.|....
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999997655
No 39
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.73 E-value=4.2e-16 Score=192.96 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=98.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
...|+|||++....++.|...|...|+....++|.++.++|.++++.|++ ++++||+ +|.+++.|||+...++||+++
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~vLv-aT~~l~~GIDi~~v~~VI~~~ 411 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRVLV-ATDVAGRGIHIDGISHVINFT 411 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCCcccCCCEEEEeC
Confidence 34689999999999999999999999999999999999999999999998 7888888 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
+++++....|++||++|.|+.-. ++.|+.++
T Consensus 412 ~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 412 LPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999999999999999998653 34445443
No 40
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.73 E-value=1.3e-15 Score=192.92 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=94.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
..++|||+......+.|...|...|+....++|.|+..+|++++++|+. +.+.||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~ILV-ATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDILI-ATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCEEE-EcchHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 7888877 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCc
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
+.++....|++||+.|.|.+-.
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CCCHHHHHHHhccccCCCCcce
Confidence 9999999999999999998654
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.72 E-value=6e-16 Score=196.40 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=94.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
+.+.|||+......+.+...|...|+++..++|+|+.++|..+++.|.. +.+.||+ +|.+.|.|+|+...++||++++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~vlV-aT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKVMV-ATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCcCCCCCEEEEcCC
Confidence 4688999999999999999999999999999999999999999999998 6788877 5589999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEE
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVS 1383 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~ 1383 (1435)
+.+.....|++||++|.|+.....
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999766543
No 42
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.71 E-value=1.4e-15 Score=201.39 Aligned_cols=105 Identities=14% Similarity=0.358 Sum_probs=84.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc------CC---cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS------SI---QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1350 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~------gI---~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1350 (1435)
+.|.|||+....+++.+.+.|.+. ++ ....++|+++ ++++++++|.+ +....++++.+..++|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~-~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN-ERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC-CCCCeEEEEecccccCCCccc
Confidence 479999999999999888887653 22 3456899875 67889999988 444455668899999999999
Q ss_pred cCEEEEecCCCCcChHHHHHHhhhccCC---CCcEEEEEE
Q 000537 1351 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ---TRPVSVLRL 1387 (1435)
Q Consensus 1351 An~VI~lDp~WNPa~e~QAIGRahRIGQ---tr~V~VyrL 1387 (1435)
...||++.|.-++....|++||+-|+-- |....|+.+
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 9999999999999999999999999754 444555554
No 43
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.70 E-value=3e-15 Score=190.82 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=69.2
Q ss_pred cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCC-CcChHHHHHHhhhccCCCCc
Q 000537 1303 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1303 ~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W-NPa~e~QAIGRahRIGQtr~ 1381 (1435)
.++++..++|.|+.++|.+++++|++ ++.+||+ +|.+.++|+|+..++.||+++++. .-+...|++||++|-|.+-.
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFRE-GEVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 36788999999999999999999998 7888888 568999999999999999999874 66788899999999987654
Q ss_pred EE
Q 000537 1382 VS 1383 (1435)
Q Consensus 1382 V~ 1383 (1435)
+.
T Consensus 559 ~i 560 (630)
T TIGR00643 559 CL 560 (630)
T ss_pred EE
Confidence 43
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.67 E-value=8.4e-15 Score=191.06 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=91.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
+.+++||++....++.+...|++. ++++..++|.|+.++|++++++|.+ ++.+||| +|...+.|+|+..+++||++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~ILV-aT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQVLV-CTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcccccccCCEEEEe
Confidence 468999999999999999999874 7889999999999999999999998 7888888 66899999999999999999
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1358 DLW-WNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1358 Dp~-WNPa~e~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
+++ +..+...|++||++|-|++- ++|-|+..
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 885 45567889999999988654 44555543
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.66 E-value=8.8e-15 Score=194.59 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=89.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
+.+++||++....++.+.+.|.+. ++++..++|.|+.++|++++.+|.+ ++++||| +|...+.|||+..+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCEEE-ECchhhcccccccCCEEEEe
Confidence 467999999999999999999876 7889999999999999999999998 8899988 55899999999999999987
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCcE
Q 000537 1358 DLW-WNPTTEDQAIDRAHRIGQTRPV 1382 (1435)
Q Consensus 1358 Dp~-WNPa~e~QAIGRahRIGQtr~V 1382 (1435)
++. |..+...|++||++|.|++--+
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEE
Confidence 764 6777899999999999887543
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.66 E-value=1.7e-14 Score=185.35 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCC-CcChHHHHHHhhhccCCCCc
Q 000537 1304 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1304 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W-NPa~e~QAIGRahRIGQtr~ 1381 (1435)
++++..++|+|+.++|++++++|.+ ++++||+ +|.+.+.|+|+..++.||+++++. ..+...|++||++|-|.+-.
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 581 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKA-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSY 581 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceE
Confidence 4788999999999999999999998 7888887 668999999999999999999874 56778899999999987643
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.63 E-value=2.5e-14 Score=184.31 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=95.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
+++.|||+......+.|...|...|+....|+|+|+.++|..++++|.. ++++||+. |.+.|.|||+...++||++++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~VLVA-TdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINIICA-TVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcEEEE-echhhcCCCccCCcEEEEcCC
Confidence 3567999999999999999999999999999999999999999999998 78888885 589999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEE
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVL 1385 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~Vy 1385 (1435)
+-+.....|++||++|.|+.-.+..+
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999998764443
No 48
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=2.6e-14 Score=172.62 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=95.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.|+|||++.....+.|++.|+..+++.+.|||..++.+|+.+++.|++ ++..||+ .|+.++.||++...++||+||
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~vLV-ATdVAaRGLDi~dV~lVInyd 417 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSPVLV-ATDVAARGLDVPDVDLVINYD 417 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcceEE-EcccccccCCCccccEEEeCC
Confidence 56799999999999999999999999999999999999999999999998 7888888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
+|=|.....+|+||..|-|++-.
T Consensus 418 fP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 418 FPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred CCCCHHHHHhhcCccccCCCCce
Confidence 99999999999999999888765
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.58 E-value=3e-13 Score=174.75 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=97.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS--------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA 1351 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~--------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A 1351 (1435)
+.|+|||++.....+.|...|+.. +.+...++|++++++|.++.++|++ ++++||+ +|.+.+.|||+...
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~vLV-aTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLGVA-TTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceEEE-ECchHhccCCcccc
Confidence 468999999999999999988653 5677889999999999999999998 8888887 77999999999999
Q ss_pred CEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHH
Q 000537 1352 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1398 (1435)
Q Consensus 1352 n~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIl 1398 (1435)
++||+++.|-+.....|++||+.|.|+.-- ++.++..+..|..++
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 999999999999999999999999997653 333444455555433
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.55 E-value=6.4e-13 Score=174.89 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=90.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCE
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH 1353 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~ 1353 (1435)
+.++|||++.....+.+...|... +..+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|||+...++
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~vLV-aTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKVVV-SSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChHHhcCCCCCCcE
Confidence 468999999999999999998762 4678899999999999999999998 7888888 5689999999999999
Q ss_pred EEEecCCCCcChHHHHHHhhhcc-CCCCcEEEE
Q 000537 1354 VLLLDLWWNPTTEDQAIDRAHRI-GQTRPVSVL 1385 (1435)
Q Consensus 1354 VI~lDp~WNPa~e~QAIGRahRI-GQtr~V~Vy 1385 (1435)
||+++++.+.....|++||++|- |+...-.++
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 99999999999999999999976 454444444
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.55 E-value=6.7e-13 Score=172.65 Aligned_cols=81 Identities=20% Similarity=0.090 Sum_probs=66.5
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----ec-----CCCCcChHHHHHHhhhcc
Q 000537 1306 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD-----LWWNPTTEDQAIDRAHRI 1376 (1435)
Q Consensus 1306 ~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~----lD-----p~WNPa~e~QAIGRahRI 1376 (1435)
.+..++|+++..+|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. || .+.++....|++||++|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~-G~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRD-RLIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHc-CCCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 45678999999999999999998 8899888 5589999999988877775 66 456777899999999999
Q ss_pred CCCCcEEEEEEE
Q 000537 1377 GQTRPVSVLRLT 1388 (1435)
Q Consensus 1377 GQtr~V~VyrLi 1388 (1435)
|....=.++-+.
T Consensus 383 g~d~~G~~ii~~ 394 (737)
T PRK02362 383 GLDPYGEAVLLA 394 (737)
T ss_pred CCCCCceEEEEe
Confidence 986553444444
No 52
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.50 E-value=9.1e-14 Score=140.37 Aligned_cols=105 Identities=31% Similarity=0.479 Sum_probs=96.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.++|||+.....++.+...|...++++..++|+++..+|..++++|++ +...+++ ++.++++|+|++.+++||+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ili-~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE-GEIVVLV-ATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EcChhhcCcChhhCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999998 4455555 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1385 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~Vy 1385 (1435)
++|++....|++||++|.||+..|.++
T Consensus 105 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 105 LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999998877653
No 53
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.50 E-value=6.2e-12 Score=161.24 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=73.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc-----CCcEEecCCCCCHH---------------------HHHHHHHHHhcCCCcc
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS-----SIQYRRLDGTMSVF---------------------ARDKAVKDFNTLPEVS 1333 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~-----gI~~~rldGsms~~---------------------qR~~aI~~Fn~d~~v~ 1333 (1435)
+.|.+||+.....+..+...|.+. +...+.++|+.+.+ ...+++++|.+++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 356666666666665555555432 22334444443222 3357999998866788
Q ss_pred EEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhcc-CC-CCcEEEEEEEe
Q 000537 1334 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI-GQ-TRPVSVLRLTV 1389 (1435)
Q Consensus 1334 VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRI-GQ-tr~V~VyrLi~ 1389 (1435)
+||+. ....+|.+....+++++.-|.=... ..||+||+.|+ +- |....|+.|+-
T Consensus 594 ilIVv-dmllTGFDaP~l~tLyldKplk~h~-LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLIVV-DMLLTGFDAPILNTLYLDKPLKYHG-LLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEEE-cccccccCCCccceEEEeccccccH-HHHHHHHhccccCCCCCCEEEEECcC
Confidence 88755 8899999999999999998876554 68999999995 43 44467776654
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=99.49 E-value=3.7e-12 Score=164.42 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=60.0
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC---------CCcChHHHHHHhhhccC
Q 000537 1307 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---------WNPTTEDQAIDRAHRIG 1377 (1435)
Q Consensus 1307 ~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~---------WNPa~e~QAIGRahRIG 1377 (1435)
+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+.+ .+||+.+.+ +.+....|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~-g~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRN-RYIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHc-CCCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 4567999999999999999997 7888888 5599999999985 688887643 35556789999999999
Q ss_pred CCCc
Q 000537 1378 QTRP 1381 (1435)
Q Consensus 1378 Qtr~ 1381 (1435)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7655
No 55
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=8.7e-12 Score=155.52 Aligned_cols=117 Identities=24% Similarity=0.399 Sum_probs=101.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
.++|||+.-....+.|...|...|+....|+|++++.+|.++++.|++ +..+|||+| ++++.||++...++||+||++
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~vLVaT-DvaaRGiDi~~v~~VinyD~p 351 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRVLVAT-DVAARGLDIPDVSHVINYDLP 351 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEEEe-chhhccCCccccceeEEccCC
Confidence 479999999999999999999999999999999999999999999996 899999955 999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 000537 1361 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1402 (1435)
Q Consensus 1361 WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~ 1402 (1435)
.++....+|+||..|.|.+- .-+.|+.. .-|.+.+...+
T Consensus 352 ~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie 390 (513)
T COG0513 352 LDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIE 390 (513)
T ss_pred CCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHH
Confidence 99999999999999999554 44445655 22444443333
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.48 E-value=5.7e-12 Score=150.52 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=88.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC--cEEecCCCCCHHHHHHH----HHHHhcCCCccEEEeeccccccccCccccC
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKA----VKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1352 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~a----I~~Fn~d~~v~VLL~StkAGg~GLNLq~An 1352 (1435)
.+.++|||++.....+.+...|++.+. .+..++|.++..+|.+. ++.|.+ +..+||| +|.+.+.|+|+ .++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~ilv-aT~~~~~GiDi-~~~ 297 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFVIV-ATQVIEASLDI-SAD 297 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeEEE-ECcchhceecc-CCC
Confidence 457999999999999999999988776 48999999999999764 889987 6677766 67899999999 588
Q ss_pred EEEEecCCCCcChHHHHHHhhhccCCCC----cEEEEEEEeCC
Q 000537 1353 HVLLLDLWWNPTTEDQAIDRAHRIGQTR----PVSVLRLTVKN 1391 (1435)
Q Consensus 1353 ~VI~lDp~WNPa~e~QAIGRahRIGQtr----~V~VyrLi~kd 1391 (1435)
.||.++.+ +....|++||++|.|.+. .|.|+.....+
T Consensus 298 ~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 298 VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88887655 778899999999999764 35555544443
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.47 E-value=7.7e-12 Score=162.43 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=63.9
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-------ecCCCCc-ChHHHHHHhhhccC
Q 000537 1306 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-------LDLWWNP-TTEDQAIDRAHRIG 1377 (1435)
Q Consensus 1306 ~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~-------lDp~WNP-a~e~QAIGRahRIG 1377 (1435)
.+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. ++.+.-| ....|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~-G~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFRE-GLIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHC-CCCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 46778999999999999999998 7899888 5699999999987776663 2222222 35589999999998
Q ss_pred CCCcEEEEEEEeCC
Q 000537 1378 QTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1378 Qtr~V~VyrLi~kd 1391 (1435)
....-.++-++..+
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 76654555455443
No 58
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.38 E-value=1.3e-12 Score=139.57 Aligned_cols=167 Identities=23% Similarity=0.288 Sum_probs=104.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccc
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 746 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 746 (1435)
.+|++||.+++.-+.+........+.++|...+|.|||+++++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 4799999999998887544321125689999999999999998886421
Q ss_pred cccccccccccccCCCCCCccchhhhhccCCCCCcEEEEECh-hhHHHHHHHHHHHhcCCCCcEEEEEeC--CC------
Q 000537 747 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHG--SS------ 817 (1435)
Q Consensus 747 ~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~-SLL~QW~~EI~k~~~~~~~L~VlvyhG--~~------ 817 (1435)
.++|||||. +|+.||.+++..+... ........- ..
T Consensus 51 ---------------------------------~~~l~~~p~~~l~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 95 (184)
T PF04851_consen 51 ---------------------------------RKVLIVAPNISLLEQWYDEFDDFGSE--KYNFFEKSIKPAYDSKEFI 95 (184)
T ss_dssp ---------------------------------CEEEEEESSHHHHHHHHHHHHHHSTT--SEEEEE--GGGCCE-SEEE
T ss_pred ---------------------------------cceeEecCHHHHHHHHHHHHHHhhhh--hhhhccccccccccccccc
Confidence 158999998 5889999999766542 111111100 00
Q ss_pred -CCC-----CcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCC
Q 000537 818 -RTK-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 891 (1435)
Q Consensus 818 -r~k-----~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~ 891 (1435)
... ........++++++++.+....... ...... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~-----------~~~~~~---------------------------~~ 137 (184)
T PF04851_consen 96 SIQDDISDKSESDNNDKDIILTTYQSLQSDIKEE-----------KKIDES---------------------------AR 137 (184)
T ss_dssp TTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-----------------------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHhhcccc-----------cccccc---------------------------hh
Confidence 000 1122457889999999997432100 000000 00
Q ss_pred CCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccC
Q 000537 892 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 947 (1435)
Q Consensus 892 ~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPI 947 (1435)
....+....++.||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 --------~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 --------RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp --------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred --------hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00113445678999999999965432 66666688899999999995
No 59
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.37 E-value=5.8e-13 Score=123.77 Aligned_cols=78 Identities=33% Similarity=0.515 Sum_probs=72.6
Q ss_pred HHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccC
Q 000537 1298 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1377 (1435)
Q Consensus 1298 ~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIG 1377 (1435)
+.|+..++.+..++|.++.++|+.+++.|+. +...||+ ++.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~-~~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNS-GEIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHT-TSSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhc-cCceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3688999999999999999999999999999 5567777 5599999999999999999999999999999999999998
No 60
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.36 E-value=1e-11 Score=157.13 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=83.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1349 (1435)
.+.++|||+......+.+...|.+.|+++..++|.+...+|..+..+|+. ..|+| +|..+|.|+++.
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g~VlI-ATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---GAVTV-ATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---CeEEE-EccccccccCCCCCccccccC
Confidence 56899999999999999999999999999999999987777666665554 25555 779999999998
Q ss_pred ccCEEEEecCCCCcChHHHHHHhhhccCCCCc
Q 000537 1350 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1350 ~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
..++|+.++++-+. .+.|++||+.|.|..-.
T Consensus 499 GL~vIit~~~ps~r-id~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 499 GLAVIGTERMENSR-VDLQLRGRSGRQGDPGS 529 (762)
T ss_pred CeEEEEecCCCCcH-HHHHhhhcccCCCCcee
Confidence 77888999998554 56999999999998765
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=1.4e-10 Score=148.19 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=93.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCc---cccC---
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNM---VAAC--- 1352 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNL---q~An--- 1352 (1435)
.+.++|||+......+.|...|.+.|+++..++|.+...+|..+..+|+. ..|+| +|..+|.|+++ ....
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g~VlI-ATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---GAVTV-ATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---CeEEE-EccchhcCcCCCccccccccc
Confidence 56899999999999999999999999999999999987777766666654 25665 77999999999 4666
Q ss_pred --EEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000537 1353 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1400 (1435)
Q Consensus 1353 --~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlel 1400 (1435)
|||.+|++-|+..+.|++||+.|.|+.-.... |+ |.|+.++.+
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 99999999999999999999999998864322 22 446665543
No 62
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.36 E-value=3.5e-11 Score=137.76 Aligned_cols=123 Identities=26% Similarity=0.291 Sum_probs=107.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.-+|||+.--.+.+.+.-.|+..|+....++|.|+...|..+++.|+. +...||+ +|+.|+.||+.+.+++||+||
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~iLv-~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSILV-CTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcEEE-ecchhcccCCCCCceEEEecC
Confidence 45789999999999999999999999999999999999999999999998 7777777 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH--HHHHHHHHHHH
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE--DRILALQQKKR 1405 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIE--ErIlelq~kK~ 1405 (1435)
-|-+-...+.|+||+.|.| +.-.+..|++.-.|| .||.....+|.
T Consensus 377 iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred CCCcHHHHHHHcccccccC--CCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999 666777888875555 35555554444
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.34 E-value=1.2e-10 Score=143.18 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC-CCcChHHHHHHhhhccCC
Q 000537 1304 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTEDQAIDRAHRIGQ 1378 (1435)
Q Consensus 1304 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~-WNPa~e~QAIGRahRIGQ 1378 (1435)
+..+..++|.|+.+++++++++|++ +++.||+ +|.+.-+|+|+.+|+.+|+.++. +--+..-|--|||+|=+.
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~-~e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKE-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHc-CCCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 4567889999999999999999998 8888888 66899999999999999999976 667788899999999443
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=1.8e-10 Score=144.50 Aligned_cols=113 Identities=18% Similarity=0.249 Sum_probs=90.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1352 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq---~An--- 1352 (1435)
.+..+|||+......+.|...|.+.|+++..|+|.+. +|++.+..|.. ....|+| +|..+|.|+++. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag-~~g~VlV-ATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAG-QRGRITV-ATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcC-CCCcEEE-EccchhcccCcCCccchhhcC
Confidence 3567999999999999999999999999999999864 66777777765 3345555 779999999988 333
Q ss_pred --EEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000537 1353 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1400 (1435)
Q Consensus 1353 --~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlel 1400 (1435)
|||.+|.+-+...+.|++||+.|.|..-... .|+ |.|+.++..
T Consensus 548 GLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 548 GLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred CCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 9999999999999999999999999765432 223 346665543
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.33 E-value=5.1e-10 Score=143.34 Aligned_cols=104 Identities=23% Similarity=0.327 Sum_probs=85.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHH-----HHHHHHhc----CC-----CccEEEeecccccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-----KAVKDFNT----LP-----EVSVMIMSLKAASL 1344 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-----~aI~~Fn~----d~-----~v~VLL~StkAGg~ 1344 (1435)
.+.++|||++....++.|.+.|+..++ ..++|.|+..+|. +++++|+. .. +...+|++|++++.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 356899999999999999999998887 8999999999999 78999976 11 11345668899999
Q ss_pred ccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCc--EEEEEE
Q 000537 1345 GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP--VSVLRL 1387 (1435)
Q Consensus 1345 GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~--V~VyrL 1387 (1435)
||++.. ++||+...++ ....||+||++|.|.... ++|+.+
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 999975 8999866654 688999999999998644 455433
No 66
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=5.4e-11 Score=131.06 Aligned_cols=109 Identities=20% Similarity=0.349 Sum_probs=99.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
...|||++-....|+|.+.|++..+.+..++|.|..++|++++.+|+. +..+||| +++.-+.|++.|..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~SrvLi-tTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRVLI-TTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceEEE-EechhhccCCcceeEEEEecCCC
Confidence 468999999999999999999999999999999999999999999999 7888888 77999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000537 1361 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1393 (1435)
Q Consensus 1361 WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTI 1393 (1435)
-|+.....||||.+|.|.+- .+..|+..+.+
T Consensus 345 ~nre~YIHRIGRSGRFGRkG--vainFVk~~d~ 375 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKG--VAINFVKSDDL 375 (400)
T ss_pred ccHHHHhhhhccccccCCcc--eEEEEecHHHH
Confidence 99999999999999999886 45567765533
No 67
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.32 E-value=7.7e-12 Score=133.81 Aligned_cols=164 Identities=27% Similarity=0.273 Sum_probs=109.9
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccc
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 746 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 746 (1435)
.++++||.+++..+.... ...++...+|.|||.+++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 458999999999998431 458999999999999887777543211
Q ss_pred cccccccccccccCCCCCCccchhhhhccCCCCCcEEEEECh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 000537 747 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 825 (1435)
Q Consensus 747 ~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~-SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L 825 (1435)
.+.+.+|||+|. .+..||..++.+.+..........+++.........+
T Consensus 52 ------------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 52 ------------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred ------------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH
Confidence 012458999995 5789999999988763322556666665432222222
Q ss_pred c--CCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCc
Q 000537 826 A--KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 903 (1435)
Q Consensus 826 ~--~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~p 903 (1435)
. .++++++|++.+...+.. ..
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~---------------------------------------------------------~~ 124 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLEN---------------------------------------------------------DL 124 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHc---------------------------------------------------------CC
Confidence 2 239999999988643211 00
Q ss_pred ccccCccEEEEcCCcccCC-hhhHHH-HHHHhc-ccCcEEEEecccCCCChh
Q 000537 904 LAKVGWFRVVLDEAQSIKN-HRTQVA-RACWGL-RAKRRWCLSGTPIQNAID 952 (1435)
Q Consensus 904 L~~i~W~rVILDEAH~IKN-~~T~~s-kAl~~L-~A~~RwlLTGTPIqN~l~ 952 (1435)
+....|+++|+||+|.+.+ ...... ..+..+ ...+++++||||..+.-.
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIEN 176 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHH
Confidence 2234577899999999985 333333 333444 578899999999744333
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.31 E-value=1.2e-11 Score=155.88 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=91.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc-------c
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------A 1351 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~-------A 1351 (1435)
.+..+|||+......+.|...|.+.|+++..++|. ..+|++.+.+|.. ....|+| +|..+|.|+++.. .
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag-~~g~VtI-ATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG-RKGAVTI-ATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC-CCceEEE-EeccccCCcCCCccchhhcCC
Confidence 67899999999999999999999999999999999 7799999999987 5566777 5699999999887 6
Q ss_pred CEEEEecCCCCcChHHHHHHhhhccCCCCcEE
Q 000537 1352 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVS 1383 (1435)
Q Consensus 1352 n~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~ 1383 (1435)
-|||.++++-++..+.|++||+.|.|..-...
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 79999999999999999999999999986533
No 69
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.29 E-value=3.8e-10 Score=145.13 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=74.3
Q ss_pred HHHHHHHHHhc--CCcEEecCCCCC--HHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC---CCc--
Q 000537 1293 LDLLEASLKDS--SIQYRRLDGTMS--VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNP-- 1363 (1435)
Q Consensus 1293 LdlLe~~L~~~--gI~~~rldGsms--~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~---WNP-- 1363 (1435)
.+.+++.|++. +.++.++|+.+. .++|++++++|.+ +++.||| .|+..+.|+|+.....|+++|.+ ..|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR-GEADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc-CCCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 35566666654 778899999986 4679999999998 7888888 55888999999999999888765 333
Q ss_pred -------ChHHHHHHhhhccCCCCcEEEEEEEe
Q 000537 1364 -------TTEDQAIDRAHRIGQTRPVSVLRLTV 1389 (1435)
Q Consensus 1364 -------a~e~QAIGRahRIGQtr~V~VyrLi~ 1389 (1435)
....|+.||+.|.|....|.+..+-.
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 46789999999988777776655433
No 70
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.28 E-value=2e-10 Score=142.76 Aligned_cols=107 Identities=12% Similarity=0.211 Sum_probs=84.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc----CCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS----SIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1354 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~----gI~-~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1354 (1435)
-.|.|||+....+++.|...|... +-. ...|+|.. ++-++.|+.|-.......+.+|.+-.-.|++...+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 469999999999999999999765 222 45777874 45567899998744444455577999999999999999
Q ss_pred EEecCCCCcChHHHHHHhhhcc-------CCCCc-EEEEEEE
Q 000537 1355 LLLDLWWNPTTEDQAIDRAHRI-------GQTRP-VSVLRLT 1388 (1435)
Q Consensus 1355 I~lDp~WNPa~e~QAIGRahRI-------GQtr~-V~VyrLi 1388 (1435)
+|+-+--+-....|.+||.-|+ ||.|. .+|+.++
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999999996 35554 5555543
No 71
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.27 E-value=2.1e-10 Score=135.35 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=96.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
...+|||.+....+|.|+..|++.|++.++|||+.+++||+.+++.|++ +...||++ |+++|.||+....++||+||.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~-~t~dIlVa-TDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE-GTGDILVA-TDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh-cCCCEEEE-ecccccCCCCCccceeeecch
Confidence 4679999999999999999999999999999999999999999999998 66777775 599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
.=+-.....||||.+|-|+.-.+ ..|+++.
T Consensus 595 aksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred hhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 99999999999999999998743 3344443
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.27 E-value=2.1e-09 Score=136.93 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
+.++|||..-...++.+.+.|++. ++.+..++|.++. +++++++|..++..+||| +|..++.||++....+||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kILV-ATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSIII-STPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEEe-ccChhhccccccCeeEEEEC
Confidence 457999999999999999999887 7999999999985 467788885446677776 77999999999999999999
Q ss_pred cCCC------------CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q 000537 1358 DLWW------------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1395 (1435)
Q Consensus 1358 Dp~W------------NPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEE 1395 (1435)
+... +.+...||.||++|. ++=.+++|+.++..+.
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7222 444556777777765 5678899998876543
No 73
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=3.5e-10 Score=132.99 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=94.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1354 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1354 (1435)
...++|+|+...+...-+...|+ ...+.+-.+.|..+.+.|.+.+++|+. ++++|||+| ++.+.|+++-..+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcS-D~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICS-DALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEeh-hhhhcCCcccccceE
Confidence 45799999999988887777776 346667779999999999999999999 899999977 999999999999999
Q ss_pred EEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1355 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1355 I~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
|.||||-.-.....|+||..|-||.- +++.++.+.
T Consensus 506 INYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 506 INYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred eecCCCchhhHHHHhhcccccccCCc--eEEEeeccc
Confidence 99999999999999999999999976 445555543
No 74
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.23 E-value=1.5e-11 Score=113.73 Aligned_cols=81 Identities=31% Similarity=0.488 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhh
Q 000537 1295 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1374 (1435)
Q Consensus 1295 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRah 1374 (1435)
.|...|+..++++..++|.++.++|.++++.|++ +.. .+|+++.++++|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN-GKI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc-CCC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4677888889999999999999999999999998 444 55568899999999999999999999999999999999999
Q ss_pred ccC
Q 000537 1375 RIG 1377 (1435)
Q Consensus 1375 RIG 1377 (1435)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 75
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.23 E-value=5.5e-11 Score=119.70 Aligned_cols=137 Identities=25% Similarity=0.220 Sum_probs=95.4
Q ss_pred ccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccccccccccccccccCCCCCCccchhh
Q 000537 692 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 771 (1435)
Q Consensus 692 GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~ 771 (1435)
+.++...+|.|||.++++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999998753210
Q ss_pred hhccCCCCCcEEEEEChhh-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--ccccCCCEEEEechhhhcccCCCCCC
Q 000537 772 EQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIVSMEVPKQPLG 848 (1435)
Q Consensus 772 ~~~~~~p~k~tLIVcP~SL-L~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~--~~L~~~DVVITTY~~L~~ev~k~~~~ 848 (1435)
...+.+||+||... ..||.+++.++... .+.+.++++....... ......+++++||+.+......
T Consensus 28 -----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~---- 96 (144)
T cd00046 28 -----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER---- 96 (144)
T ss_pred -----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc----
Confidence 11246999999985 46667777776542 5677777776544322 2246789999999988643210
Q ss_pred CchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCCcccCChhhHHH
Q 000537 849 DKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 928 (1435)
Q Consensus 849 ~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~s 928 (1435)
..+....|++||+||+|.+.+......
T Consensus 97 -----------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 97 -----------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred -----------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHH
Confidence 002234588999999999988665443
Q ss_pred ---HHHHhcccCcEEEEeccc
Q 000537 929 ---RACWGLRAKRRWCLSGTP 946 (1435)
Q Consensus 929 ---kAl~~L~A~~RwlLTGTP 946 (1435)
.........+++++||||
T Consensus 124 ~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 124 GLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhhCCccceEEEEeccC
Confidence 333445778899999999
No 76
>PRK09401 reverse gyrase; Reviewed
Probab=99.23 E-value=8.7e-10 Score=147.88 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=76.5
Q ss_pred CeEEEEcccHHH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000537 1281 EKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1353 (1435)
Q Consensus 1281 eKVIVFSQ~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S---tkAGg~GLNLq~-An~ 1353 (1435)
.++|||++.... ++.|...|+..|++...++|++ .+.+++|.+ ++++|||.+ +..++.||++.. ..+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCCCcceeE
Confidence 478999988666 9999999999999999999999 334699998 899999986 789999999997 899
Q ss_pred EEEecCCC------CcChHHHHHHhhhcc
Q 000537 1354 VLLLDLWW------NPTTEDQAIDRAHRI 1376 (1435)
Q Consensus 1354 VI~lDp~W------NPa~e~QAIGRahRI 1376 (1435)
|||++.|= .......+++|.-++
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999985 445556777777643
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.23 E-value=1e-09 Score=131.46 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=68.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC--CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSS--IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1356 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~g--I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1356 (1435)
++.|+|||+.....++.+...|+..+ +.+..++|.++..+|.++. +..||| +|.+.+.||++.. .+||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLV-aTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFDILL-GTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCCEEE-EecHHhcccCCCC-ceEE-
Confidence 46799999999999999999999865 5778999999999987653 345555 7799999999975 4666
Q ss_pred ecCCCCcChHHHHHHhhh
Q 000537 1357 LDLWWNPTTEDQAIDRAH 1374 (1435)
Q Consensus 1357 lDp~WNPa~e~QAIGRah 1374 (1435)
++| -++....||+||++
T Consensus 341 ~~p-~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FSA-RDAAAFWQRLGRLG 357 (357)
T ss_pred ECC-CCHHHHhhhcccCC
Confidence 564 46777888888863
No 78
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.14 E-value=4e-09 Score=142.25 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=80.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcC---------------------------------CcEEecCCCCCHHHHHHHHHHH
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSS---------------------------------IQYRRLDGTMSVFARDKAVKDF 1326 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~g---------------------------------I~~~rldGsms~~qR~~aI~~F 1326 (1435)
+.++|||++.....+.+...|++.. +....++|+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 3567777777777777777775421 1145678999999999999999
Q ss_pred hcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhcc
Q 000537 1327 NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1376 (1435)
Q Consensus 1327 n~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRI 1376 (1435)
++ +.++||+ +|.+...|||+...+.||+++.+.+.+...|++||+.|.
T Consensus 324 K~-G~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KS-GELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred Hh-CCceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 98 8888887 569999999999999999999999999999999999985
No 79
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.14 E-value=6.2e-10 Score=133.43 Aligned_cols=108 Identities=23% Similarity=0.229 Sum_probs=96.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
-...|||+....-++-|+.+|...|+++..|.|.|++.+|..+++..+. -.++||+ |++..+.|++-..+|-||++|+
T Consensus 272 y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rILV-sTDLtaRGIDa~~vNLVVNiD~ 349 (980)
T KOG4284|consen 272 YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRILV-STDLTARGIDADNVNLVVNIDA 349 (980)
T ss_pred hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEEEE-ecchhhccCCccccceEEecCC
Confidence 3567899999999999999999999999999999999999999999987 5677777 7799999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
+-+..+...||||++|+|..- ..|..+..+
T Consensus 350 p~d~eTY~HRIGRAgRFG~~G-~aVT~~~~~ 379 (980)
T KOG4284|consen 350 PADEETYFHRIGRAGRFGAHG-AAVTLLEDE 379 (980)
T ss_pred CcchHHHHHHhhhcccccccc-eeEEEeccc
Confidence 999999999999999999765 455544433
No 80
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.14 E-value=4.5e-09 Score=125.96 Aligned_cols=105 Identities=23% Similarity=0.336 Sum_probs=97.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
..+|++||.+-...++.++..|...++++..++|..+..+|.++++.|.. +...|||.+ ..++.|||.....|||+||
T Consensus 336 ~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pvlVaT-~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 336 KWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPVLVAT-NVAARGLDIPNVKHVINYD 413 (482)
T ss_pred ccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcceEEEe-hhhhcCCCCCCCceeEEee
Confidence 34699999999999999999999999999999999999999999999998 888888854 9999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1385 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~Vy 1385 (1435)
.+-+-.....||||..|-|+.-..+.+
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEE
Confidence 999999999999999999998765554
No 81
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.11 E-value=1.1e-08 Score=130.78 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=99.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcC-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSS-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
..+|||++-..+.+.+...|.+.+ ..+..=||+++.++|..+-++|++ ++.+++++ |.+...||+.-..+.||.+..
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lravV~-TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKAVVA-TSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceEEEE-ccchhhccccCCceEEEEeCC
Confidence 479999999999999999999876 788888999999999999999999 77999985 488999999999999999999
Q ss_pred CCCcChHHHHHHhhh-ccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000537 1360 WWNPTTEDQAIDRAH-RIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1406 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRah-RIGQtr~V~VyrLi~kdTIEErIlelq~kK~~ 1406 (1435)
|=.-+...||+||+. |+|.+.. .++++.+ .++.+.-+..-+..
T Consensus 332 P~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred cHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHHHHH
Confidence 999999999999985 5555433 3345555 56665555444443
No 82
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=3.1e-09 Score=122.06 Aligned_cols=110 Identities=27% Similarity=0.353 Sum_probs=98.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
...|+|||....-++|-|..-|.-.||....++|.-.+.+|+.+++.|+. +++++|+ .|+.++.||++....||++||
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrILv-aTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRILV-ATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEEEE-EechhhcCCCchhcceeeccC
Confidence 56899999999999999999999999999999999999999999999999 8999988 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
-+-|-.....|+||.+|-|.+-. -|..|.-.|
T Consensus 542 FP~nIeeYVHRvGrtGRaGr~G~-sis~lt~~D 573 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRTGRAGRTGT-SISFLTRND 573 (629)
T ss_pred CCccHHHHHHHhcccccCCCCcc-eEEEEehhh
Confidence 99999999999999999998764 444444444
No 83
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.08 E-value=7.9e-09 Score=139.00 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=68.9
Q ss_pred CeEEEEcccH---HHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000537 1281 EKAIVFSQWT---KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1353 (1435)
Q Consensus 1281 eKVIVFSQ~t---~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S---tkAGg~GLNLq~-An~ 1353 (1435)
.++|||++-. ..++.|...|+..|++...++|.++ ++++++|.+ +++.|||.+ +..++.||++.. ..+
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAE-GEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHc-CCCCEEEEeccccCcccccCCCCccccE
Confidence 5789999988 8999999999999999999999986 478999998 899999987 689999999998 799
Q ss_pred EEEecCC
Q 000537 1354 VLLLDLW 1360 (1435)
Q Consensus 1354 VI~lDp~ 1360 (1435)
||++|+|
T Consensus 402 vI~~~~P 408 (1171)
T TIGR01054 402 AVFLGVP 408 (1171)
T ss_pred EEEECCC
Confidence 9999987
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=1.5e-08 Score=126.26 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=74.8
Q ss_pred HHHHHHHHHhc--CCcEEecCCCCCHHHH--HHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC--C-Cc--
Q 000537 1293 LDLLEASLKDS--SIQYRRLDGTMSVFAR--DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW--W-NP-- 1363 (1435)
Q Consensus 1293 LdlLe~~L~~~--gI~~~rldGsms~~qR--~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~--W-NP-- 1363 (1435)
.+.+++.|.+. +.++.++|+.++..++ ++++++|.+ +++.||| +|...+.|+++...+.|+++|.+ . .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCEEE-eCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 45666677665 7889999999876655 899999998 7888887 56888999999999999877654 2 34
Q ss_pred -------ChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1364 -------TTEDQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1364 -------a~e~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
....|+.||+.|-+....|.+..+-..
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 357899999999888777766554443
No 85
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.05 E-value=1.9e-08 Score=131.02 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=90.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHh---cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
.++|||..-...++.+...|.+ .++.++.++|+++.++|.++++.|.. +..+|+| +|..+..||++...++||.+
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkVlV-ATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKVVL-ATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEEEE-ecchHhhcccccCceEEEEc
Confidence 5799999999999999999986 47889999999999999999999987 6677766 77999999999999999998
Q ss_pred cCC----CCcCh--------------HHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000537 1358 DLW----WNPTT--------------EDQAIDRAHRIGQTRPVSVLRLTVKNT 1392 (1435)
Q Consensus 1358 Dp~----WNPa~--------------e~QAIGRahRIGQtr~V~VyrLi~kdT 1392 (1435)
+.. |||.. ..||.||++|. ++=..|+|+.+..
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 865 66654 56888888776 5667889987653
No 86
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.05 E-value=9.3e-09 Score=134.30 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCCeEEEEcccHHHHHHHH----HHHHhcC----CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLE----ASLKDSS----IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1350 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe----~~L~~~g----I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1350 (1435)
.+.|.|+|+.+...+..+. ..+...+ .....+.|++...+|.++...|+. +++.+++ ++.|.-.|+++-.
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~~~-st~AlelgidiG~ 382 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLGVI-ATNALELGIDIGS 382 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccEEe-cchhhhhceeehh
Confidence 5789999999999999886 4444445 567899999999999999999999 7888888 7799999999999
Q ss_pred cCEEEEecCCC-CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000537 1351 ACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1400 (1435)
Q Consensus 1351 An~VI~lDp~W-NPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlel 1400 (1435)
.+.||+..-|- .-....|+.||++|-||.-.+.+. .-.+-++..+...
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v--~~~~~~d~yy~~~ 431 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV--LRSDPLDSYYLRH 431 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE--eCCCccchhhhhC
Confidence 99999999776 557788999999999965543332 2266676665543
No 87
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.05 E-value=1.4e-08 Score=120.56 Aligned_cols=121 Identities=25% Similarity=0.264 Sum_probs=101.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh--cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKD--SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~--~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
..|+|||-..-....++.+.+.+ .|++..-++|.|++..|-.+..+|.. .-.|+|..|+.++.||++.+.+.||-+
T Consensus 313 k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpaVdwViQ~ 390 (758)
T KOG0343|consen 313 KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPAVDWVIQV 390 (758)
T ss_pred ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCcccceEEEe
Confidence 47899999888888888888876 49999999999999999999999987 345677788999999999999999999
Q ss_pred cCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000537 1358 DLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1405 (1435)
Q Consensus 1358 Dp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~ 1405 (1435)
|.|=+....+.|+||.-|.+-.-+-.++ ++ -+-||.|+...++|.
T Consensus 391 DCPedv~tYIHRvGRtAR~~~~G~sll~--L~-psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 391 DCPEDVDTYIHRVGRTARYKERGESLLM--LT-PSEEEAMLKKLQKKK 435 (758)
T ss_pred cCchhHHHHHHHhhhhhcccCCCceEEE--Ec-chhHHHHHHHHHHcC
Confidence 9999999999999999999877665443 22 344577776666663
No 88
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.04 E-value=1.5e-08 Score=119.87 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=90.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
.|+|||+.--.+..+....|+...+++..|+|++++..|.....+|.+. +-- +|+.+++++.|++....+-||-||||
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-esg-IL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ESG-ILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-ccc-eEEecchhhccCCCCCceEEEEeCCC
Confidence 7999999999999999999999999999999999999999999999983 333 45567999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCc
Q 000537 1361 WNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1361 WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
-+|...+.|+||..|-|-+-.
T Consensus 409 ~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 409 SDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred CCHHHHHHHhccccccCCCce
Confidence 999999999999999776554
No 89
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.03 E-value=2.2e-08 Score=123.96 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=95.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
+.-.|||+..+...+.|++.|...|+....|+|+|+.++|+..-++|.. ++++||++ |.|.|-|+|=.+...||+||+
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~iiVA-T~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKVMVA-TNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEE-eccccCccCCCCceEEEEecC
Confidence 3457999999999999999999999999999999999999999999997 77888885 599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEE
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSV 1384 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~V 1384 (1435)
|=+.....|=+|||+|-|...+...
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999999887544
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.01 E-value=1.5e-08 Score=129.78 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=96.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1349 (1435)
.+..||||+......+.|...|.+.||++..++|.+...+|+.+.++|+. + .|+| +|..+|.|+++.
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~-G--~VtI-ATNmAGRGtDI~Lggn~~~~~ 518 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP-G--AVTI-ATNMAGRGTDIVLGGSLAADL 518 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC-C--cEEE-eccCccCCcceecCCchhhhh
Confidence 68899999999999999999999999999999999999999999999998 4 3555 669999998865
Q ss_pred -----------------------------ccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000537 1350 -----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1400 (1435)
Q Consensus 1350 -----------------------------~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlel 1400 (1435)
+.=|||.-+.+=|-.++.|..||++|.|..-....| + |+|+.++.+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~-l----SleD~l~~~ 593 (896)
T PRK13104 519 ANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY-L----SLEDNLMRI 593 (896)
T ss_pred hccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE-E----EcCcHHHHH
Confidence 345899999999999999999999999998764443 2 556655543
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=1.2e-08 Score=129.99 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=85.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1352 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq---~An--- 1352 (1435)
.+..+|||+......+.|...|.+.|+++..++|.+...+++-+..+|+. ..|+| +|..+|.|++.. ...
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g~VtI-ATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---GAVTI-ATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---ceEEE-EeccccCCCCCCCCcchhhhC
Confidence 57899999999999999999999999999999999875555555555544 23555 669999999984 566
Q ss_pred --EEEEecCCCCcChHHHHHHhhhccCCCCcE
Q 000537 1353 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPV 1382 (1435)
Q Consensus 1353 --~VI~lDp~WNPa~e~QAIGRahRIGQtr~V 1382 (1435)
|||.++.+-+...+.|++||+.|.|..-..
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 999999999999999999999999998764
No 92
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.97 E-value=1.5e-08 Score=120.28 Aligned_cols=98 Identities=18% Similarity=0.305 Sum_probs=78.3
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEE
Q 000537 1304 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVS 1383 (1435)
Q Consensus 1304 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~ 1383 (1435)
+.++.+++|+|++++|..++..|...... ||| .|++++.||+|....-||-||||..++....||||.-|+|-+-.-.
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~~~-VLL-cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 471 DLKFYRLHGSMEQEERTSVFQEFSHSRRA-VLL-CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred cceEEEecCchhHHHHHHHHHhhccccce-EEE-ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 44699999999999999999999985544 555 7799999999999999999999999999999999999999988643
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHHH
Q 000537 1384 VLRLTVKNTVEDRILALQQKKREM 1407 (1435)
Q Consensus 1384 VyrLi~kdTIEErIlelq~kK~~l 1407 (1435)
. |+...-.| .....+++..+
T Consensus 549 L--fL~P~Eae--y~~~l~~~~~~ 568 (708)
T KOG0348|consen 549 L--FLLPSEAE--YVNYLKKHHIM 568 (708)
T ss_pred E--EecccHHH--HHHHHHhhcch
Confidence 3 34444333 44444444433
No 93
>PRK14701 reverse gyrase; Provisional
Probab=98.97 E-value=6.5e-08 Score=132.95 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=78.5
Q ss_pred CCeEEEEcccHHH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec---cccccccCccc-cC
Q 000537 1280 GEKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL---KAASLGLNMVA-AC 1352 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St---kAGg~GLNLq~-An 1352 (1435)
+...|||++.... ++.|...|...|++...++|. |.+++++|.+ +++.|||.+. ..++.||++.. ..
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCCccC
Confidence 3578999987653 589999999999999999995 8999999999 8999999774 57889999997 89
Q ss_pred EEEEecCCC---CcChHHH-------------HHHhhhccCCC
Q 000537 1353 HVLLLDLWW---NPTTEDQ-------------AIDRAHRIGQT 1379 (1435)
Q Consensus 1353 ~VI~lDp~W---NPa~e~Q-------------AIGRahRIGQt 1379 (1435)
+|||+|.|= +-..+.| .++|+.|-|..
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999999985 5444444 45999998864
No 94
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.96 E-value=1.1e-07 Score=124.33 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=89.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh---cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1356 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1356 (1435)
..++|||..-...++.+...|.+ .++.+..++|.++.++|+++++.|.. +..+|+| +|..+..||++....+||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkVlv-ATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKVVL-ATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEEEE-ecchHHhcccccCceEEEE
Confidence 35799999999999999999986 57889999999999999999999976 6666666 7799999999999999999
Q ss_pred ecCC----CCcC--------------hHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000537 1357 LDLW----WNPT--------------TEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1393 (1435)
Q Consensus 1357 lDp~----WNPa--------------~e~QAIGRahRIGQtr~V~VyrLi~kdTI 1393 (1435)
.+.. |+|. ...||.||++|. ++=++|||+.+...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 7654 4443 356777777665 57789999886544
No 95
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.95 E-value=7.4e-08 Score=113.57 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=99.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
..|+|||..-....+-|...|+..++.+..++|+|.+++|.+.+..|+. ....||+++ +.+..||+...-.+||+||.
T Consensus 468 ~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~Vlvat-DvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 468 EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPVLVAT-DVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCceEEEe-eHhhcCCCccccceeecccc
Confidence 3689999999999999999999999999999999999999999999998 667788754 99999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1394 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIE 1394 (1435)
.=.-....|+|||..|-|-+ =..|.|+++...+
T Consensus 546 ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 88888888999999999988 3567788876554
No 96
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.95 E-value=2.9e-08 Score=128.14 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=77.7
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccccccccc
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 747 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 747 (1435)
.|+++|+.++.-.+.. . .-.|+|--+|.|||+.++..|......
T Consensus 31 el~~~qq~av~~~~~~-~-----~N~li~aPTgsGKTlIA~lai~~~l~~------------------------------ 74 (766)
T COG1204 31 ELFNPQQEAVEKGLLS-D-----ENVLISAPTGSGKTLIALLAILSTLLE------------------------------ 74 (766)
T ss_pred HhhHHHHHHhhccccC-C-----CcEEEEcCCCCchHHHHHHHHHHHHHh------------------------------
Confidence 6999999999766543 1 237999999999999887666542110
Q ss_pred ccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 000537 748 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 826 (1435)
Q Consensus 748 ~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~ 826 (1435)
..++.+-|||.. |..+=.+|+.+|- .-.++|.+++|...... ..+.
T Consensus 75 ------------------------------~~~k~vYivPlkALa~Ek~~~~~~~~--~~GirV~~~TgD~~~~~-~~l~ 121 (766)
T COG1204 75 ------------------------------GGGKVVYIVPLKALAEEKYEEFSRLE--ELGIRVGISTGDYDLDD-ERLA 121 (766)
T ss_pred ------------------------------cCCcEEEEeChHHHHHHHHHHhhhHH--hcCCEEEEecCCcccch-hhhc
Confidence 024689999975 7778888887332 23699999999877554 6889
Q ss_pred CCCEEEEechhhh
Q 000537 827 KFDVVITTYSIVS 839 (1435)
Q Consensus 827 ~~DVVITTY~~L~ 839 (1435)
++|||||||+.+-
T Consensus 122 ~~~ViVtT~EK~D 134 (766)
T COG1204 122 RYDVIVTTPEKLD 134 (766)
T ss_pred cCCEEEEchHHhh
Confidence 9999999998874
No 97
>PRK09694 helicase Cas3; Provisional
Probab=98.92 E-value=1.2e-07 Score=123.97 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHH----HHHHHHHhcCCCc--cEEEeeccccccccCcc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFAR----DKAVKDFNTLPEV--SVMIMSLKAASLGLNMV 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR----~~aI~~Fn~d~~v--~VLL~StkAGg~GLNLq 1349 (1435)
.+.++|||++-...+..+.+.|++.+ +++..++|.++..+| +++++.|..++.. ..+|++|.+...||++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 46799999999999999999998764 678999999999999 5678899443432 2455688999999999
Q ss_pred ccCEEEEecCCCCcChHHHHHHhhhccCCC
Q 000537 1350 AACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1379 (1435)
Q Consensus 1350 ~An~VI~lDp~WNPa~e~QAIGRahRIGQt 1379 (1435)
.++.||....+ .....||+||++|-|.+
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 56877775443 46789999999999875
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.90 E-value=2.5e-07 Score=120.29 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC-CCcChH
Q 000537 1290 TKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTE 1366 (1435)
Q Consensus 1290 t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~-WNPa~e 1366 (1435)
...+.-+...|+.. ..++...||.|+..+-++++.+|.+ ++..|||++ ...-.||++..||++|+-+.. +--+..
T Consensus 813 V~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~-g~~dVLv~T-TIIEtGIDIPnANTiIIe~AD~fGLsQL 890 (1139)
T COG1197 813 VESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN-GEYDVLVCT-TIIETGIDIPNANTIIIERADKFGLAQL 890 (1139)
T ss_pred hhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc-CCCCEEEEe-eeeecCcCCCCCceEEEeccccccHHHH
Confidence 33344444444432 3356788999999999999999998 889999955 788899999999999997654 566788
Q ss_pred HHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1367 DQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1367 ~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
-|--|||+|-. +.-+-|-|+..
T Consensus 891 yQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 891 YQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred HHhccccCCcc--ceEEEEEeecC
Confidence 89999999943 34566666664
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=7.3e-08 Score=123.58 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=94.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1349 (1435)
.+..+|||+......+.|...|.+.|+++..++|. ..+|++.|.+|.. ....|+| +|..+|.|+++.
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag-~~g~VtI-ATNmAGRGtDI~LgGn~~~~~ 504 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG-RPGAVTI-ATNMAGRGTDIKLGGNPEMLA 504 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC-CCceEEE-ecccccCCcCccCCCchhhhh
Confidence 57899999999999999999999999999999996 6799999999997 5667777 568999998864
Q ss_pred -----------------------------ccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000537 1350 -----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1399 (1435)
Q Consensus 1350 -----------------------------~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIle 1399 (1435)
+.=|||.-+.+=|-..+.|..||++|.|..-....| + |+|+.++.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~-l----SleD~l~~ 578 (830)
T PRK12904 505 AALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY-L----SLEDDLMR 578 (830)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE-E----EcCcHHHH
Confidence 256899999999999999999999999998775443 2 44554443
No 100
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.84 E-value=5.4e-08 Score=115.00 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=91.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
..++|||.+-...+.-+.-.|--.|++...++|+.++.||-..++.|++ .++.||| +|+.++.||+.....+||+|+.
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidvLi-aTDvAsRGLDI~gV~tVINy~m 503 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDVLI-ATDVASRGLDIEGVQTVINYAM 503 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCEEE-EechhhccCCccceeEEEeccC
Confidence 3679999999999999999999999999999999999999999999998 8899998 5599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCC
Q 000537 1360 WWNPTTEDQAIDRAHRIGQT 1379 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQt 1379 (1435)
|-.-..+..|+||.-|-|..
T Consensus 504 P~t~e~Y~HRVGRTARAGRa 523 (691)
T KOG0338|consen 504 PKTIEHYLHRVGRTARAGRA 523 (691)
T ss_pred chhHHHHHHHhhhhhhcccC
Confidence 98888999999999998864
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.83 E-value=2.3e-07 Score=118.95 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=95.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1349 (1435)
.|..||||+......+.|...|...|+++..+++.+...+|+.+.++|+. +. |+| +|..+|.|+++.
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~-G~--VtI-ATnmAGRGTDIkLggn~~~~~ 523 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT-GA--VTI-ATNMAGRGTDIVLGGNWNMEI 523 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC-Cc--EEE-ecCCcCCCcceecCCchHHhh
Confidence 68899999999999999999999999999999999999999999999998 44 555 669999998865
Q ss_pred ----------------------------ccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000537 1350 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1400 (1435)
Q Consensus 1350 ----------------------------~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlel 1400 (1435)
+.=|||.-+.+=|-.++.|..||++|.|..-.-..| + |+|+.++.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~-l----SlED~L~r~ 597 (908)
T PRK13107 524 EALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY-L----SMEDSLMRI 597 (908)
T ss_pred hhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE-E----EeCcHHHHH
Confidence 345899999999999999999999999998763332 2 456555543
No 102
>COG4889 Predicted helicase [General function prediction only]
Probab=98.81 E-value=3.9e-08 Score=121.19 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=59.8
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhc-C-CCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCC
Q 000537 1304 SIQYRRLDGTMSVFARDKAVKDFNT-L-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1380 (1435)
Q Consensus 1304 gI~~~rldGsms~~qR~~aI~~Fn~-d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr 1380 (1435)
.+...-+||+|+..+|.+....=+. . .+++| |-..++.++|++..+-+.|||++|--.-....||+||+-|---.+
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCC
Confidence 3456789999999999666554433 2 34555 448899999999999999999999977778889999999965433
No 103
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.80 E-value=2.7e-07 Score=110.48 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=97.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE---
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL--- 1356 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~--- 1356 (1435)
..+.|||+....-...|+.+|...|++..-|+++++-.+|..+-.+|.. .++.+++ +|.|.|.|+++.+. .|||
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~VV-TTAAL~AGVDFPAS-QVIFEsL 516 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAAVV-TTAALAAGVDFPAS-QVIFESL 516 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcceEe-ehhhhhcCCCCchH-HHHHHHH
Confidence 3578999999999999999999999999999999999999999999998 7787777 77999999999854 4444
Q ss_pred -ec-CCCCcChHHHHHHhhhccCCCCcEEEEEEEe---------CCCHHHHHHHHH
Q 000537 1357 -LD-LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV---------KNTVEDRILALQ 1401 (1435)
Q Consensus 1357 -lD-p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~---------kdTIEErIlelq 1401 (1435)
|. -|.+|.-..|..||++|.|-...=.||-++- .+|=||--+.++
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL 572 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLL 572 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHh
Confidence 43 3559999999999999999766656666664 345555544443
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.78 E-value=4.7e-08 Score=107.28 Aligned_cols=109 Identities=22% Similarity=0.200 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccccccccc
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 747 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 747 (1435)
.|+++|++++.-+.+ ++..+++-..|.|||++.+..+......
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~------------------------------ 63 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDP------------------------------ 63 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHh------------------------------
Confidence 479999999998885 2568999999999999854333221100
Q ss_pred ccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Ccccc
Q 000537 748 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL 825 (1435)
Q Consensus 748 ~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k-~~~~L 825 (1435)
........+|||+|.. ++.||...++++.. ...+.+..++|..... ....+
T Consensus 64 --------------------------~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 64 --------------------------SPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred --------------------------hcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHh
Confidence 0000123489999986 78999999988755 3467888888865432 22233
Q ss_pred c-CCCEEEEechhhhc
Q 000537 826 A-KFDVVITTYSIVSM 840 (1435)
Q Consensus 826 ~-~~DVVITTY~~L~~ 840 (1435)
. ..+|+|+|.+.+..
T Consensus 117 ~~~~~iiv~T~~~l~~ 132 (203)
T cd00268 117 KRGPHIVVATPGRLLD 132 (203)
T ss_pred cCCCCEEEEChHHHHH
Confidence 3 78999999887753
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=1.2e-05 Score=103.92 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=94.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1352 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An------ 1352 (1435)
.+..||||+......+.|.+.|...||++..+++ ...+|++.|.+|.. ....|+| +|..+|.|+++.-..
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~VtI-ATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGAVTI-ATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCeEEE-eccCcCCCCCcCCccchhhhC
Confidence 5789999999999999999999999999999997 47899999999997 5566666 669999999988332
Q ss_pred --EEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000537 1353 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1401 (1435)
Q Consensus 1353 --~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq 1401 (1435)
+||..+.+-+...+.|++||++|.|..-....+ + |.|+.++.+-
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff--v---SleD~Lmr~f 718 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY--V---SLEDELMRLF 718 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE--e---chhHHHHHhh
Confidence 458889999999999999999999998764221 2 5666666543
No 106
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.68 E-value=9.5e-07 Score=112.16 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=63.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCCcCh----------HHHHHHhhhccCCC
Q 000537 1310 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT----------EDQAIDRAHRIGQT 1379 (1435)
Q Consensus 1310 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~----------e~QAIGRahRIGQt 1379 (1435)
=+.+|...+|+.+=+.|.. +.++||. +|...+-|+||.+-..+|-=.+.|++.. ..|-+|||+|..=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~-G~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKE-GHIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhc-CCceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 3678889999999999998 8888888 5688999999998777776667777765 56999999998755
Q ss_pred CcEEEEEEEeCCCHH
Q 000537 1380 RPVSVLRLTVKNTVE 1394 (1435)
Q Consensus 1380 r~V~VyrLi~kdTIE 1394 (1435)
..=..+-....++++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 444444445555443
No 107
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.61 E-value=6.4e-07 Score=102.82 Aligned_cols=247 Identities=20% Similarity=0.210 Sum_probs=145.6
Q ss_pred CCcHHHHHHHHHHHHhhccCC---CCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccc
Q 000537 668 PLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 744 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~---~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 744 (1435)
.|=.-|+++|.+.-++-...+ .-.|-+|+|.+|.||-.++-++|..+...
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------------------------- 89 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR--------------------------- 89 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------------------------
Confidence 466789999999887665322 33678999999999999999998753211
Q ss_pred cccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 000537 745 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE 824 (1435)
Q Consensus 745 ~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~ 824 (1435)
++.+++-|-+...|..-=++.+... . ...+.+.....-.+. +...
T Consensus 90 --------------------------------Gr~r~vwvS~s~dL~~Da~RDl~DI-G-~~~i~v~~l~~~~~~-~~~~ 134 (303)
T PF13872_consen 90 --------------------------------GRKRAVWVSVSNDLKYDAERDLRDI-G-ADNIPVHPLNKFKYG-DIIR 134 (303)
T ss_pred --------------------------------CCCceEEEECChhhhhHHHHHHHHh-C-CCcccceechhhccC-cCCC
Confidence 1224455556666765555555432 2 113333333222211 1111
Q ss_pred ccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcc
Q 000537 825 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 904 (1435)
Q Consensus 825 L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL 904 (1435)
-+.+|+.+||++|..+..+ +.+++ .+. ..+.++ +
T Consensus 135 -~~~GvlF~TYs~L~~~~~~---------------------------~~~~~-------------sRl-~ql~~W----~ 168 (303)
T PF13872_consen 135 -LKEGVLFSTYSTLISESQS---------------------------GGKYR-------------SRL-DQLVDW----C 168 (303)
T ss_pred -CCCCccchhHHHHHhHHhc---------------------------cCCcc-------------chH-HHHHHH----H
Confidence 2567999999999754210 00000 000 000001 0
Q ss_pred cccCc-cEEEEcCCcccCChhh------HHHHHHHhcc----cCcEEEEecccCCCChhhhhhhcccc--c-cccccchH
Q 000537 905 AKVGW-FRVVLDEAQSIKNHRT------QVARACWGLR----AKRRWCLSGTPIQNAIDDLYSYFRFL--R-YDPFAVYK 970 (1435)
Q Consensus 905 ~~i~W-~rVILDEAH~IKN~~T------~~skAl~~L~----A~~RwlLTGTPIqN~l~DLyslL~FL--r-p~pf~~~~ 970 (1435)
. -.| .+||+||+|..||..+ ++..++..|+ .-+.+-.|||... .+..|.-+-++- . ..||.++.
T Consensus 169 g-~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas-ep~NmaYm~RLGLWG~gtpf~~~~ 246 (303)
T PF13872_consen 169 G-EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS-EPRNMAYMSRLGLWGPGTPFPDFD 246 (303)
T ss_pred h-cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC-CCceeeeeeeccccCCCCCCCCHH
Confidence 0 112 3799999999999644 6677776663 3467889999974 345554333321 1 23577888
Q ss_pred HHHhhhcccCCCCchhhHHHHHHHH--hHhhheeccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHH
Q 000537 971 SFCSMIKVPISKNPVKGYKKLQAVL--KTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQ 1038 (1435)
Q Consensus 971 ~F~~~f~~pi~~~~~~~~~~L~~lL--~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr~~Y~~ 1038 (1435)
+|...++ ++.....+-+..-| ...+++|.. .+-.....++.+++++++.++|+.
T Consensus 247 ~f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~L----------Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 247 DFLEAME----KGGVGAMEMVAMDLKARGMYIARQL----------SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHHH----hcCchHHHHHHHHHHhcchheeeec----------ccCCceEEEEEecCCHHHHHHhcC
Confidence 8877654 33333344343333 346677765 355567889999999999999974
No 108
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.60 E-value=5.6e-06 Score=110.85 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCc---EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQ---YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1356 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~---~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1356 (1435)
..++|||..-...++.+...|+..+++ +..++|.++.++|.++++. .+..+|+| +|..+..||++.+..+||.
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkIIV-ATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRIVL-ATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeEEE-eccHHhhccccCcceEEEE
Confidence 467999999999999999999988765 5678999999999988664 34556655 7899999999999999999
Q ss_pred ec---------------CCCCc---ChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000537 1357 LD---------------LWWNP---TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1394 (1435)
Q Consensus 1357 lD---------------p~WNP---a~e~QAIGRahRIGQtr~V~VyrLi~kdTIE 1394 (1435)
++ ++-.| +...||.||++|. ++=.+|+|++++..+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 75 33334 3456777776665 566788999865443
No 109
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.59 E-value=4.5e-06 Score=112.10 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1356 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1356 (1435)
..++|||..-...++.+...|.+.+ +.+..++|.++.++|+++++.+ +..+|+ ++|..+..||++....+||.
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkIV-LATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRIV-LATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceEE-EeccHHHhccccCCeeEEEe
Confidence 3579999999999999999998764 4578899999999999885443 334554 58899999999999999998
Q ss_pred ecCC----CC--------------cChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q 000537 1357 LDLW----WN--------------PTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1395 (1435)
Q Consensus 1357 lDp~----WN--------------Pa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEE 1395 (1435)
++.. +| .+...||.||++|.| +=.+|||+++...+.
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 7732 22 246678889888887 667899998765443
No 110
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.57 E-value=3.9e-07 Score=104.72 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=95.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
...|||++-..++..|...|...|.++..++|.+...+|.+++++|+. +..+||| +|.+.+.|++.+..+.||+||++
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kVLi-tTnV~ARGiDv~qVs~VvNydlP 408 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKVLI-TTNVCARGIDVAQVSVVVNYDLP 408 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceEEE-EechhhcccccceEEEEEecCCc
Confidence 468999999999999999999999999999999999999999999998 7788888 67999999999999999999998
Q ss_pred C------CcChHHHHHHhhhccCCCCcEEEEEEEe-CCCHH
Q 000537 1361 W------NPTTEDQAIDRAHRIGQTRPVSVLRLTV-KNTVE 1394 (1435)
Q Consensus 1361 W------NPa~e~QAIGRahRIGQtr~V~VyrLi~-kdTIE 1394 (1435)
- .+.+...||||.+|.|.+-- -+- |+- +++.+
T Consensus 409 ~~~~~~pD~etYlHRiGRtGRFGkkG~-a~n-~v~~~~s~~ 447 (477)
T KOG0332|consen 409 VKYTGEPDYETYLHRIGRTGRFGKKGL-AIN-LVDDKDSMN 447 (477)
T ss_pred cccCCCCCHHHHHHHhcccccccccce-EEE-eecccCcHH
Confidence 4 35577899999999997763 333 544 34443
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.56 E-value=2.2e-07 Score=98.40 Aligned_cols=158 Identities=21% Similarity=0.256 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccccccc
Q 000537 671 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 750 (1435)
Q Consensus 671 phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vk 750 (1435)
|+|.+++.-+.+. +-.++.-.+|.|||..++-.++.....
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 7999999988832 237999999999999987555431100
Q ss_pred cccccccccCCCCCCccchhhhhccCCCCCcEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-C-cccc-c
Q 000537 751 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-D-PCEL-A 826 (1435)
Q Consensus 751 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k-~-~~~L-~ 826 (1435)
...+.+||++|.. ++.|=.+++.+++.. ..+++..++|..... + ...+ .
T Consensus 42 --------------------------~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T PF00270_consen 42 --------------------------GKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSN 94 (169)
T ss_dssp --------------------------TSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHT
T ss_pred --------------------------CCCceEEEEeecccccccccccccccccc-cccccccccccccccccccccccc
Confidence 0112589999975 789999999888764 457888888765422 1 1223 4
Q ss_pred CCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccc
Q 000537 827 KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAK 906 (1435)
Q Consensus 827 ~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~ 906 (1435)
..+|+|+|++.|...+.. . ...+
T Consensus 95 ~~~ilv~T~~~l~~~~~~-----------------~--------------------------------------~~~~-- 117 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISN-----------------G--------------------------------------KINI-- 117 (169)
T ss_dssp TSSEEEEEHHHHHHHHHT-----------------T--------------------------------------SSTG--
T ss_pred cccccccCcchhhccccc-----------------c--------------------------------------cccc--
Confidence 699999999998643210 0 0011
Q ss_pred cCccEEEEcCCcccCCh--hhHHHHHHHhc---ccCcEEEEecccCCCChhh
Q 000537 907 VGWFRVVLDEAQSIKNH--RTQVARACWGL---RAKRRWCLSGTPIQNAIDD 953 (1435)
Q Consensus 907 i~W~rVILDEAH~IKN~--~T~~skAl~~L---~A~~RwlLTGTPIqN~l~D 953 (1435)
...++||+||+|.+... .......+..+ +..+.+++||||- ..+++
T Consensus 118 ~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 118 SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred ccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 22578999999998662 22233333333 2356899999997 55554
No 112
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.52 E-value=2.8e-07 Score=105.70 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=106.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
..-+||||++-..-.|-|.++|--.|+..+.|+|+-.+++|..+|+.|+. +...||+ .|++++-||++++..|||+||
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~-gkKDVLV-ATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA-GKKDVLV-ATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc-CCCceEE-EecchhccCCCccchhhccCC
Confidence 34689999999999999999999999999999999999999999999998 6777777 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH----HHHHHHHH
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA----LQQKKREM 1407 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIle----lq~kK~~l 1407 (1435)
.+-.-.....||||.+|-|.+-- -..||-+++-|.-+++ +++.|+++
T Consensus 498 MP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlDLK~LL~EakQ~v 548 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLDLKHLLQEAKQEV 548 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHHHHHHHHHhhccC
Confidence 98777778899999999887764 3446777776665555 45666654
No 113
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.46 E-value=4.2e-06 Score=107.30 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=92.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
...|+|||++.-.-+|.|.+.|.+.|+....++|..+..+|...+++|++ +.+.+|| .|+..+.||+...-..||+||
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~-~~~~LLv-aTsvvarGLdv~~l~Lvvnyd 689 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN-GVVNLLV-ATSVVARGLDVKELILVVNYD 689 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc-cCceEEE-ehhhhhcccccccceEEEEcc
Confidence 35799999999999999999999999999999999999999999999998 4455555 668899999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
.+=.......|.||..|-|.+- .-|.|+..
T Consensus 690 ~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 690 FPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred cchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 8866666778888888887776 44555655
No 114
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.42 E-value=2.5e-05 Score=102.16 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=97.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhc---CCCccEEEeeccccccccCccccCEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT---LPEVSVMIMSLKAASLGLNMVAACHVL 1355 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~---d~~v~VLL~StkAGg~GLNLq~An~VI 1355 (1435)
.+.|++|-.+-...+..+.+.|+..+.++..+|+.+...+|.+.++...+ ..+.. ++++|++.-.|+++. .+ ++
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid-fd-~m 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID-FD-VL 515 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-cC-ee
Confidence 56899999999999999999999887789999999999999999886663 23344 455889999999998 33 44
Q ss_pred EecCCCCcChHHHHHHhhhccC--CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000537 1356 LLDLWWNPTTEDQAIDRAHRIG--QTRPVSVLRLTVKNTVEDRILALQQKKREMV 1408 (1435)
Q Consensus 1356 ~lDp~WNPa~e~QAIGRahRIG--Qtr~V~VyrLi~kdTIEErIlelq~kK~~l~ 1408 (1435)
+-|+. -.....||.||++|-| ....+.|+...-......+.++....+....
T Consensus 516 ITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 516 ITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred eecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 44443 2467889999999999 5556888877777777777766666555544
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.41 E-value=1.7e-06 Score=110.89 Aligned_cols=117 Identities=24% Similarity=0.286 Sum_probs=97.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.++|||+.....++.|...|...|+++..++|.++..+|.++++.|+. +.+.||| ++...+.|+++..++.||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~VLV-~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceEEE-EcChhcCCeeeCCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 7788776 668999999999999999999
Q ss_pred C-----CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC--HHHHHHHH
Q 000537 1359 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT--VEDRILAL 1400 (1435)
Q Consensus 1359 p-----~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdT--IEErIlel 1400 (1435)
. +=+.....|++||+.|.. .. .|+.|+...| +...|.+.
T Consensus 519 adifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 3 446778899999999963 22 3455555554 44444443
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.38 E-value=3.1e-05 Score=97.83 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=85.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1349 (1435)
.|.-|||.+.....-+.|...|.+.||++..++..-. ++-.++|.+= +...-+.++|.-+|.|-++.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A---G~~gaVTIATNMAGRGTDIkLg~~~~~~~ 501 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA---GKYGAVTVSTQMAGRGTDIRLGGSDEADR 501 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc---CCCCcEEEEecCCCCccCeecCCCcccch
Confidence 6889999999999999999999999999999998743 2223344332 33333444668888997755
Q ss_pred ------ccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000537 1350 ------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1401 (1435)
Q Consensus 1350 ------~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq 1401 (1435)
+.=|||..+.+=+-..+.|..||+.|.|..-....|- |+|+.++.+-
T Consensus 502 ~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f 554 (764)
T PRK12326 502 DRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAAN 554 (764)
T ss_pred HHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhc
Confidence 3469999999999999999999999999987644331 5566655443
No 117
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.37 E-value=1.9e-05 Score=97.36 Aligned_cols=85 Identities=27% Similarity=0.338 Sum_probs=65.3
Q ss_pred HHHHhcCCCccEEEeeccccccccCccccCEE--------EEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000537 1323 VKDFNTLPEVSVMIMSLKAASLGLNMVAACHV--------LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1394 (1435)
Q Consensus 1323 I~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V--------I~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIE 1394 (1435)
.++|-+ ++..|-|+| .|++.|+.||.-.+| |-+++||....-+|-+||.||-.|..--..+.||.+=-=|
T Consensus 850 KqrFM~-GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMD-GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhcc-ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 346665 778888888 899999999965443 5599999999999999999999998876666667665556
Q ss_pred HHHHHHHHHHHHHHH
Q 000537 1395 DRILALQQKKREMVA 1409 (1435)
Q Consensus 1395 ErIlelq~kK~~l~~ 1409 (1435)
.|...+..++.+-..
T Consensus 928 rRFAS~VAKRLESLG 942 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLG 942 (1300)
T ss_pred hHHHHHHHHHHHhhc
Confidence 666666666555443
No 118
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.36 E-value=1.1e-05 Score=93.96 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHH------------HHHhc--CCCccEEEeecccccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAV------------KDFNT--LPEVSVMIMSLKAASL 1344 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI------------~~Fn~--d~~v~VLL~StkAGg~ 1344 (1435)
.+.++||.++-..++|+||.+|...++.|.|++|.+-.++....- ..... ...+.|.|+++.-...
T Consensus 116 ~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~ 195 (297)
T PF11496_consen 116 YPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYN 195 (297)
T ss_dssp SSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---T
T ss_pred CCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccc
Confidence 467999999999999999999999999999999987644443332 11111 1346677776554333
Q ss_pred ----ccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHH
Q 000537 1345 ----GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQ 1402 (1435)
Q Consensus 1345 ----GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~ 1402 (1435)
.++-...+.||-+|+.+++....-..-|.+.-.+ +.+-|+||+..+|+|--++....
T Consensus 196 ~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 196 NKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp TTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred cCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 2334467899999999999886644444443333 78999999999999998877665
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.30 E-value=4.1e-06 Score=107.91 Aligned_cols=107 Identities=24% Similarity=0.318 Sum_probs=92.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+.++|||+.....++.|...|...|+++..++|.++..+|..+++.|+. +.+.|+| ++...+.|+++..++.||++|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~vlV-~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceEEE-EeCHHhCCccccCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 6777776 668999999999999999999
Q ss_pred C-----CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000537 1359 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1390 (1435)
Q Consensus 1359 p-----~WNPa~e~QAIGRahRIGQtr~V~VyrLi~k 1390 (1435)
. +-++....|++||+.|- .. =.++.|+..
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~-~~--G~~i~~~~~ 556 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARN-VN--GKVILYADK 556 (652)
T ss_pred CcccccCCCHHHHHHHhccccCC-CC--CEEEEEecC
Confidence 6 34778899999999993 32 235555553
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.28 E-value=0.0023 Score=77.71 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=103.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.+++++|-+=-..|++-|..+|.+.||++..+|.....-+|..+|.+.+. +...||+ .....-+||+|..++-|.++|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~DvLV-GINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccEEE-eehhhhccCCCcceeEEEEee
Confidence 67999999999999999999999999999999999999999999999998 8888888 678899999999999999999
Q ss_pred CC-----CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000537 1359 LW-----WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1404 (1435)
Q Consensus 1359 p~-----WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK 1404 (1435)
.. -+-....|-||||-|--.-+ |..|-=.+.++++..|-+..+++
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred cCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHHH
Confidence 76 46678899999999943332 55554445556777776655443
No 121
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.23 E-value=8.2e-07 Score=100.09 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=93.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
...|||++.+...++|+..+.+.|+....++..|..+.|.++..+|++ +.++.|++| +..-.|++.|+.|.||++|-+
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crnLVct-DL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRNLVCT-DLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccceeeeh-hhhhcccccceeeEEEecCCC
Confidence 578999999999999999999999999999999999999999999999 899999976 899999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCC
Q 000537 1361 WNPTTEDQAIDRAHRIGQTR 1380 (1435)
Q Consensus 1361 WNPa~e~QAIGRahRIGQtr 1380 (1435)
-|+.....||||.+|.|-.-
T Consensus 401 k~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred CCHHHHHHHccCCccCCCcc
Confidence 99999999999999999754
No 122
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.21 E-value=2e-06 Score=98.39 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCccEEEeeccccccccCcccc-------CEE-EEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000537 1321 KAVKDFNTLPEVSVMIMSLKAASLGLNMVAA-------CHV-LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1392 (1435)
Q Consensus 1321 ~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A-------n~V-I~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdT 1392 (1435)
...+.|++ ++..|+|+| +|||.|+.|++- .|| |.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 56679998 788999998 999999999952 344 67999999999999999999999998866666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q 000537 1393 VEDRILALQQKKREMVASAFGEDE 1416 (1435)
Q Consensus 1393 IEErIlelq~kK~~l~~~~lg~d~ 1416 (1435)
.|.|......+|.+-..++...+.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 899999999999988766654443
No 123
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.18 E-value=0.0016 Score=75.24 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=75.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcE---EecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQY---RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1355 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~---~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI 1355 (1435)
.+.-++||..-..+++-+...|++. +++ ..++.. ...|.+.+++|++ +...+|| +|.....|+.+...+..+
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~-~~~~~i~~Vhs~--d~~R~EkV~~fR~-G~~~lLi-TTTILERGVTfp~vdV~V 378 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKK-LPKETIASVHSE--DQHRKEKVEAFRD-GKITLLI-TTTILERGVTFPNVDVFV 378 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhh-CCccceeeeecc--CccHHHHHHHHHc-CceEEEE-EeehhhcccccccceEEE
Confidence 5678999999999999999999543 332 334433 3579999999998 7777776 778999999999999888
Q ss_pred EecC--CCCcChHHHHHHhhhccCC
Q 000537 1356 LLDL--WWNPTTEDQAIDRAHRIGQ 1378 (1435)
Q Consensus 1356 ~lDp--~WNPa~e~QAIGRahRIGQ 1378 (1435)
+=.- -+.-+...|--||++|---
T Consensus 379 lgaeh~vfTesaLVQIaGRvGRs~~ 403 (441)
T COG4098 379 LGAEHRVFTESALVQIAGRVGRSLE 403 (441)
T ss_pred ecCCcccccHHHHHHHhhhccCCCc
Confidence 7543 4888999999999999544
No 124
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.15 E-value=0.00013 Score=94.52 Aligned_cols=112 Identities=16% Similarity=0.260 Sum_probs=84.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHH-HHHHHHhcCCCccEEEeeccccccccCcc--------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-KAVKDFNTLPEVSVMIMSLKAASLGLNMV-------- 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-~aI~~Fn~d~~v~VLL~StkAGg~GLNLq-------- 1349 (1435)
.+.-|||-+.....-+.|...|.+.||++..++..-. +++ .+|.+ .+..--+.++|..+|.|-++.
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~---AG~~g~VTIATNmAGRGTDIkl~~~v~~~ 641 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAG---AGKLGAVTVATNMAGRGTDIKLDEEAVAV 641 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHh---cCCCCcEEEeeccccCCcccccCchHHhc
Confidence 5788999999999999999999999999999988733 444 33332 233333444668888997754
Q ss_pred ccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000537 1350 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1400 (1435)
Q Consensus 1350 ~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlel 1400 (1435)
+.=|||.-+.+-|...+.|..||+.|.|..-.-..+ + |+|+.++.+
T Consensus 642 GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~-l----SlEDdL~~~ 687 (970)
T PRK12899 642 GGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF-L----SFEDRLMRL 687 (970)
T ss_pred CCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE-E----EcchHHHHH
Confidence 346899999999999999999999999998763332 1 556666543
No 125
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.13 E-value=1.2e-05 Score=95.31 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=90.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1356 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1356 (1435)
..+|+|||-..-...++....|... .+.++.++|.|+..+|.++++.|.+ ..-.||+ +|+.++.||+....+.||.
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~-~~~~vl~-~TDVaARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK-LSNGVLF-CTDVAARGLDIPGIDLVVQ 331 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh-ccCceEE-eehhhhccCCCCCceEEEe
Confidence 4589999998888888888877654 7789999999999999999999998 3334555 7799999999999999999
Q ss_pred ecCCCCcChHHHHHHhhhccCCCCcEEE
Q 000537 1357 LDLWWNPTTEDQAIDRAHRIGQTRPVSV 1384 (1435)
Q Consensus 1357 lDp~WNPa~e~QAIGRahRIGQtr~V~V 1384 (1435)
+|||-+|.....|.||..|.|..-.-.|
T Consensus 332 ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 332 FDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred cCCCCChhHHHhhcchhhhccCccceEE
Confidence 9999999999999999999998776444
No 126
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.09 E-value=1.1e-05 Score=92.52 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=94.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
+..-++||.|-+....+|...|+..+++.+.+++-|++++|-.++.+|+. ...+|||+ |++++.||+.....-||++|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~ilia-TDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARILIA-TDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccEEEE-echhhcCCCCCceeEEEecC
Confidence 45679999999999999999999999999999999999999999999998 77888885 59999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
.|-.|.....|+||.-|-|..-.
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999887664
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.01 E-value=0.00017 Score=93.39 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=79.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1349 (1435)
.|.-|||-+.....-+.|.+.|.+.||++..++.... ++++.|-+ + .+..--+.++|..+|.|-++.
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~-AG~~GaVTIATNMAGRGTDIkLg~n~~~~~ 523 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-Q-AGRPGALTIATNMAGRGTDILLGGNWEVEV 523 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-c-CCCCCcEEEeccCCCCCCCEecCCchHHHH
Confidence 6889999999999999999999999999988888743 44443333 1 233333344667888887764
Q ss_pred ----------------------------ccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEE
Q 000537 1350 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSV 1384 (1435)
Q Consensus 1350 ----------------------------~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~V 1384 (1435)
+.=|||.-+.+=|-.++.|..||+.|.|..-....
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 524 AALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred HhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 34689999999999999999999999999876443
No 128
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.00 E-value=0.00045 Score=90.34 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=35.2
Q ss_pred CEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000537 1352 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1406 (1435)
Q Consensus 1352 n~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~ 1406 (1435)
++||+|||.-..-+..| +-|++|.|.. +.||-|+.++|+||.-+....+|.+
T Consensus 478 ~~VImYEP~~sfIR~IE-vyra~r~~r~--~rVyfL~y~~S~EEq~yl~sirrEK 529 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLE-VYKASRPLRP--LRVYFLYYGGSIEEQRYLTSLRREK 529 (814)
T ss_pred CEEEEECCChHHHHHHH-HHHccCCCCC--cEEEEEEECCcHHHHHHHHHHHHHH
Confidence 89999999644334434 1245555543 8999999999999976554444443
No 129
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.98 E-value=3.3e-05 Score=94.13 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=90.5
Q ss_pred eEEEEcccHHHHHHHHHHH-HhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1282 KAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1282 KVIVFSQ~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
.+|||-|...-...|...| .-.+|.+-.++|..+..+|+..+++|+. +.+.||++ |...+.|+++.+++.||+||.+
T Consensus 389 P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~IwvLic-Tdll~RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWVLIC-TDLLARGIDFKGVNLVINYDFP 466 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeEEEe-hhhhhccccccCcceEEecCCC
Confidence 5899999999999998888 6779999999999999999999999999 89999995 5999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCc
Q 000537 1361 WNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1361 WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
=.-.....+|||.+|-|+.-.
T Consensus 467 ~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 467 QSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred chhHHHHHHhhccCCCCCCcc
Confidence 888899999999999998764
No 130
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=2.1e-05 Score=91.61 Aligned_cols=107 Identities=20% Similarity=0.320 Sum_probs=97.9
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
...+||++...-++.|...|..+++....++|.|...+|+.+++.|+. +..+||| ++.-.+.|+++|..+-||+||+|
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrvlI-ttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRVLI-TTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceEEe-eccccccccchhhcceeeeeccc
Confidence 678999999999999999999999999999999999999999999998 8889988 56888999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1361 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1361 WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
-|......++||..|.|.+- .+..++++.
T Consensus 342 ~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 342 ARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred cchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 99999999999999999775 445566655
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=0.0011 Score=85.33 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc-------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA------- 1351 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A------- 1351 (1435)
.+..|||.+.....-+.|...|.+.||++..++... .+|++.|-+ ..+..--+.++|..+|.|-+..-.
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ--NAREAEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc--hhhHHHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcC
Confidence 678999999999999999999999999999999873 345544433 224444444566888999886633
Q ss_pred -CEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000537 1352 -CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1399 (1435)
Q Consensus 1352 -n~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIle 1399 (1435)
=|||..+.+=+-..+.|..||++|.|..-....| + |+|+.++.
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~-l----SLeD~L~r 544 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF-I----SLDDQLFR 544 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEE-E----ecchHHHH
Confidence 3999999999999999999999999998764443 2 45555554
No 132
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.70 E-value=0.00066 Score=86.38 Aligned_cols=79 Identities=23% Similarity=0.266 Sum_probs=54.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC---------CCCcChHHHHHHhhhccCCCC
Q 000537 1310 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL---------WWNPTTEDQAIDRAHRIGQTR 1380 (1435)
Q Consensus 1310 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp---------~WNPa~e~QAIGRahRIGQtr 1380 (1435)
=||+.=+--++-+=--|+. +=++||+ .|...+-|+|+.+-+.||- .. ..+|.-..|.-|||+|-|=..
T Consensus 636 HH~GlLPivKE~VE~LFqr-GlVKVLF-ATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~ 712 (1248)
T KOG0947|consen 636 HHGGLLPIVKEVVELLFQR-GLVKVLF-ATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDE 712 (1248)
T ss_pred hcccchHHHHHHHHHHHhc-CceEEEe-ehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCc
Confidence 3555555444444446776 7888888 5599999999997666553 21 258999999999999999766
Q ss_pred cEEEEEEEeCCC
Q 000537 1381 PVSVLRLTVKNT 1392 (1435)
Q Consensus 1381 ~V~VyrLi~kdT 1392 (1435)
.=+|. ++.++.
T Consensus 713 tGTVi-i~~~~~ 723 (1248)
T KOG0947|consen 713 TGTVI-IMCKDS 723 (1248)
T ss_pred CceEE-EEecCC
Confidence 54443 344444
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.60 E-value=0.0038 Score=81.60 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=56.2
Q ss_pred CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-----ecCC---C---CcChHHHHHHhh
Q 000537 1305 IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-----LDLW---W---NPTTEDQAIDRA 1373 (1435)
Q Consensus 1305 I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~-----lDp~---W---NPa~e~QAIGRa 1373 (1435)
+.|..=+.+|++.+|+..=+-|.+ +.++||+ ||+..+-|+||.+ .+||+ |||. | .|-...|..||+
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~-g~iqvlv-statlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFAD-GHIQVLV-STATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhc-CceeEEE-eehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 345566788999999999888987 8999988 8899999999985 45554 5543 4 455778999999
Q ss_pred hccCC
Q 000537 1374 HRIGQ 1378 (1435)
Q Consensus 1374 hRIGQ 1378 (1435)
+|.+-
T Consensus 685 grp~~ 689 (1674)
T KOG0951|consen 685 GRPQY 689 (1674)
T ss_pred CCCcc
Confidence 99763
No 134
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0017 Score=83.81 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=62.6
Q ss_pred CCeEEEEccc---HHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccc---cccccCcc-ccC
Q 000537 1280 GEKAIVFSQW---TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA---ASLGLNMV-AAC 1352 (1435)
Q Consensus 1280 ~eKVIVFSQ~---t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkA---Gg~GLNLq-~An 1352 (1435)
|.-.|||.+- ...++.|..+|+.+|+....++.. +.+.++.|.. +++.||+....- .-.||+|. ...
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~-GeidvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE-GEVDVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc-CceeEEEEecccccceeecCCchhhee
Confidence 4467999998 888999999999999998887663 3788999998 999999965433 34699997 889
Q ss_pred EEEEecCC
Q 000537 1353 HVLLLDLW 1360 (1435)
Q Consensus 1353 ~VI~lDp~ 1360 (1435)
++||+..|
T Consensus 409 YaIF~GvP 416 (1187)
T COG1110 409 YAVFYGVP 416 (1187)
T ss_pred EEEEecCC
Confidence 99999987
No 135
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.50 E-value=0.0045 Score=79.82 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=70.9
Q ss_pred HHHHHHHHhc--CCcEEecCCCCCHHH--HHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC---CCcC--
Q 000537 1294 DLLEASLKDS--SIQYRRLDGTMSVFA--RDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNPT-- 1364 (1435)
Q Consensus 1294 dlLe~~L~~~--gI~~~rldGsms~~q--R~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~---WNPa-- 1364 (1435)
+.+++.|++. +.+++++|+.++... -+..++.|.+ ++..||| .|....-|+|+....-|.++|.+ .+|.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~-ge~dILi-GTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN-GEADILI-GTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC-CCCCeee-cchhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 3444444442 677888988876533 4678999998 8888888 55888999999999888887765 3343
Q ss_pred -------hHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1365 -------TEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1365 -------~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
...|.-||++|-+-.-.|.+-.+....
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 445999999998777777777666654
No 136
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.46 E-value=0.00014 Score=87.65 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=88.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
-+.+.|||++..+-+.-|.-+|...+|+...++..|.+++|-+.+++|.+.+. .+|+.+++++.||+.+...|||+|.
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~--~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS--GVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC--eEEEeehhhhccCCCCCcceEEEee
Confidence 45789999999999999999999999999999999999999999999998443 3445669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCC
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQ 1378 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQ 1378 (1435)
.|-.......|-||.-|-+.
T Consensus 540 VPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred cCCccceeEecccccccccC
Confidence 99999999999999999764
No 137
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.38 E-value=0.00037 Score=81.62 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=84.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1355 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI 1355 (1435)
.-.|.|||+.-..-.|-|++++.+.| +..+.++|...+.+|.+-++.|.. .+++.||+ ++.++.||+++....||
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvkflic-tdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVKFLIC-TDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeEEEEE-ehhhhccccccCCceEE
Confidence 56799999999999999999998864 457889999999999999999998 77887775 59999999999999999
Q ss_pred EecCCCCcChHHHHHHhhhc
Q 000537 1356 LLDLWWNPTTEDQAIDRAHR 1375 (1435)
Q Consensus 1356 ~lDp~WNPa~e~QAIGRahR 1375 (1435)
++.++-.......||||+.|
T Consensus 582 nvtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred EEecCcccchhhhhhhccch
Confidence 99999888888888887776
No 138
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00014 Score=79.77 Aligned_cols=55 Identities=38% Similarity=0.901 Sum_probs=47.0
Q ss_pred hhcccccCCCCCCccchhcccCcccchhhhhhhcccCCC--CCCCccccccccccchhh
Q 000537 1113 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDN--QCPTRNCKIRLSLSSVFS 1169 (1435)
Q Consensus 1113 ~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~--~Cp~~~C~~~l~~~~vfs 1169 (1435)
.....|.||.|.+++||+|.|||+||=-||-.|+....+ .|| +|+..+...++..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cP--VCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECP--VCKAEVSIDTVVP 101 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCC--ccccccccceEEe
Confidence 445789999999999999999999999999999977554 465 6999988887764
No 139
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.15 E-value=0.0008 Score=88.74 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=97.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
+.+-.||||....+.+.+...|+..|+....|+.+|+..+|+.+-++|.. ++++|++++ =|.|-|||-.+..-||++.
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~VivAT-VAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRVIVAT-VAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeEEEEE-eeccCCCCCCceeEEEECC
Confidence 67889999999999999999999999999999999999999999999999 668888855 7889999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEE
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLR 1386 (1435)
Q Consensus 1359 p~WNPa~e~QAIGRahRIGQtr~V~Vyr 1386 (1435)
.|=+-...-|.+|||+|-|+....+.|+
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEec
Confidence 9988889999999999999988755543
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.12 E-value=0.0015 Score=79.34 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=82.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCc-EEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLL 1356 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkAGg~GLNLq~An~VI~ 1356 (1435)
+|+-|+-||... +-.+...++++|.. ..+|+|+.+++-|.+-...||+. +++.||++| +|.|-||||- -.||||
T Consensus 357 ~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEE
Confidence 788899998753 33455666777666 89999999999999999999984 578899977 9999999995 578999
Q ss_pred ecCC-CC--------cChHHHHHHhhhccCCCCc-EEEEEEE
Q 000537 1357 LDLW-WN--------PTTEDQAIDRAHRIGQTRP-VSVLRLT 1388 (1435)
Q Consensus 1357 lDp~-WN--------Pa~e~QAIGRahRIGQtr~-V~VyrLi 1388 (1435)
+++. +| -....|--|||+|.|.+-+ =.|..|-
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 8876 22 2344599999999998765 3444343
No 141
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.08 E-value=0.023 Score=73.20 Aligned_cols=70 Identities=24% Similarity=0.227 Sum_probs=59.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec-CCCCcChHHHHHHhhhccCCCCc
Q 000537 1310 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD-LWWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1310 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD-p~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
=+.+++...|..+---|+. +...||+ +|...+.|+|+.+-..|+--| +..||-...|+-|||+|-|=..-
T Consensus 968 HHaglNr~yR~~VEvLFR~-g~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~l 1038 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQ-GHLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTL 1038 (1330)
T ss_pred cccccchHHHHHHHHHhhc-CceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccc
Confidence 3677888999888888988 8888888 669999999999888887776 67899999999999999885443
No 142
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.07 E-value=0.11 Score=68.81 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=83.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--------c
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------A 1350 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------~ 1350 (1435)
.|..|||-+.....-++|.+.|...||++-+++...- ++++.|-+=.- ..-.|-| +|.-+|.|-+.. +
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~AG-~~GaVTI-ATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAG-QPGTVTI-ATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhcC-CCCcEEE-eccCcCCCcCcccchhhHHcC
Confidence 6889999999999999999999999999999888743 44443332221 1233455 567778887755 5
Q ss_pred cCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000537 1351 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1399 (1435)
Q Consensus 1351 An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIle 1399 (1435)
.=|||.-+.+-+..++.|..||++|.|..-....| + |+|+.++.
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~-l----SLEDdLmr 746 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY-V----SLEDNLMR 746 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE-E----EcccHHHH
Confidence 67999999999999999999999999987764333 1 44555544
No 143
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.03 E-value=0.0049 Score=64.28 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=23.9
Q ss_pred cccCccEEEEcCCcccCChhhHHHHHH-Hhc-cc--CcEEEEecccC
Q 000537 905 AKVGWFRVVLDEAQSIKNHRTQVARAC-WGL-RA--KRRWCLSGTPI 947 (1435)
Q Consensus 905 ~~i~W~rVILDEAH~IKN~~T~~skAl-~~L-~A--~~RwlLTGTPI 947 (1435)
...+|+.||+||+|.. ++.|-..+-. ..+ .. -..+.+||||-
T Consensus 92 ~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 92 RLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp CTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred cccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 3467999999999974 4444443322 222 22 25789999995
No 144
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=97.03 E-value=0.024 Score=71.16 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe----c----CCCCcChHHHHHHhhhccCCCCcE
Q 000537 1311 DGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL----D----LWWNPTTEDQAIDRAHRIGQTRPV 1382 (1435)
Q Consensus 1311 dGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l----D----p~WNPa~e~QAIGRahRIGQtr~V 1382 (1435)
+++.-+--++-+=--|++ +=++||++ |...+-|||+.+-..|+-- | -|-...-.+|.-|||+|-|-...=
T Consensus 453 HsGLLPIlKE~IEILFqE-GLvKvLFA-TETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrG 530 (1041)
T KOG0948|consen 453 HSGLLPILKEVIEILFQE-GLVKVLFA-TETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRG 530 (1041)
T ss_pred cccchHHHHHHHHHHHhc-cHHHHHHh-hhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCc
Confidence 444444444444446776 77888884 5999999999866555442 2 133556778999999999975443
Q ss_pred EEEEEEeCCCHHH
Q 000537 1383 SVLRLTVKNTVED 1395 (1435)
Q Consensus 1383 ~VyrLi~kdTIEE 1395 (1435)
.|. ++....+|.
T Consensus 531 ivI-lmiDekm~~ 542 (1041)
T KOG0948|consen 531 IVI-LMIDEKMEP 542 (1041)
T ss_pred eEE-EEecCcCCH
Confidence 333 444444444
No 145
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.02 E-value=0.0014 Score=77.57 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=94.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec--------------------
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL-------------------- 1339 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St-------------------- 1339 (1435)
..|+|||.+-.+..--|.-.|++-||+.+.++|.++..-|..+|++||. +-..++|+|-
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEEccCccchhhhhccccccccccC
Confidence 4799999999999999999999999999999999999999999999998 7777777664
Q ss_pred ----c-c---------cccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000537 1340 ----K-A---------ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1391 (1435)
Q Consensus 1340 ----k-A---------Gg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~V~VyrLi~kd 1391 (1435)
+ + .+.||+++..+.||++|.|-++...+.|+||..|-|.+-. +.-|+...
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt--alSfv~P~ 410 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT--ALSFVSPK 410 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCc--eEEEecch
Confidence 0 1 2469999999999999999999999999999999877664 44455544
No 146
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.99 E-value=0.00036 Score=75.56 Aligned_cols=52 Identities=38% Similarity=0.800 Sum_probs=42.2
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhccc---------------CCCCCCCccccccccccchh
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA---------------DDNQCPTRNCKIRLSLSSVF 1168 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~---------------~~~~Cp~~~C~~~l~~~~vf 1168 (1435)
...|+||.+...+|+++.|||.||..||.+|+.. ....|| .|+..+....++
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CP--vCR~~Is~~~Lv 84 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCP--VCKSDVSEATLV 84 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCC--CCCCcCChhcEE
Confidence 4679999999999999999999999999998642 123576 599888766554
No 147
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.97 E-value=0.0055 Score=80.70 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred EEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCC
Q 000537 911 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 948 (1435)
Q Consensus 911 rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIq 948 (1435)
.||+||+|++.. ..+.++++..|+....+.-|||--.
T Consensus 204 ivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCC
Confidence 599999999965 2346688999999999999999643
No 148
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.87 E-value=0.058 Score=70.46 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=46.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHH-HHHHHHhcCCCccEEEeeccccccccC
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-KAVKDFNTLPEVSVMIMSLKAASLGLN 1347 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-~aI~~Fn~d~~v~VLL~StkAGg~GLN 1347 (1435)
.+..|||-+.....-+.|...|.+.||++..++......+++ ++|.+ . +..--+-++|..+|.|-+
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~-A--G~~G~VTIATNMAGRGTD 489 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ-A--GRKGSITIATNMAGRGTD 489 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh-c--CCCCcEEEeccccCCCcC
Confidence 678999999999999999999999999999999874222333 44443 2 232223335566677743
No 149
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.87 E-value=0.00044 Score=56.13 Aligned_cols=37 Identities=46% Similarity=1.051 Sum_probs=31.1
Q ss_pred ccCCCCCCccc-hhcccCcccchhhhhhhcccCCCCCCC
Q 000537 1118 CGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPT 1155 (1435)
Q Consensus 1118 C~iC~d~~e~~-vvt~CgHvfC~~Ci~e~l~~~~~~Cp~ 1155 (1435)
|++|.+...++ ++++|||.||.+|+..++.. ..+||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 78999999999 68999999999999999887 677873
No 150
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.72 E-value=0.00068 Score=60.57 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=38.1
Q ss_pred cccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccc
Q 000537 1117 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1164 (1435)
Q Consensus 1117 ~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1164 (1435)
.|++|.+...+|++++|||+||.+||.+++.. ...||. |+..+..
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~--~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPV--TGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCC--CcCCCCh
Confidence 69999999999999999999999999999976 567885 5555443
No 151
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.69 E-value=0.0082 Score=80.75 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=37.4
Q ss_pred HHHHHHH-hcCCCccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccC-C-CCcEEEEEEE
Q 000537 1320 DKAVKDF-NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG-Q-TRPVSVLRLT 1388 (1435)
Q Consensus 1320 ~~aI~~F-n~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIG-Q-tr~V~VyrLi 1388 (1435)
.....+| ..+..+++||+. .-.=+|.+-..-+++++ |-+--.....||+.|+.|+= . +..-.|+.|+
T Consensus 581 ~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 3344443 445567777766 33346666666665554 44455666778888888853 3 2334444443
No 152
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00064 Score=85.79 Aligned_cols=48 Identities=35% Similarity=0.954 Sum_probs=42.8
Q ss_pred cccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000537 1117 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1166 (1435)
Q Consensus 1117 ~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1166 (1435)
.|+.|++.+.+.+++.|||+||.+|+...+....-+||. |...|.+..
T Consensus 645 kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~--Cn~aFganD 692 (698)
T KOG0978|consen 645 KCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPK--CNAAFGAND 692 (698)
T ss_pred eCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCC--CCCCCCccc
Confidence 499999999999999999999999999999999999996 776666544
No 153
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.64 E-value=0.001 Score=55.05 Aligned_cols=33 Identities=36% Similarity=0.765 Sum_probs=28.3
Q ss_pred ccCCCCCCccchhcccCcccchhhhhhhcccCC
Q 000537 1118 CGICNDPPEDAVVSICGHVFCNQCICERLTADD 1150 (1435)
Q Consensus 1118 C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~ 1150 (1435)
|++|.+...+|+...|||.||..||..++....
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC
Confidence 789999999999999999999999999986643
No 154
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00076 Score=76.26 Aligned_cols=49 Identities=31% Similarity=0.810 Sum_probs=41.9
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccch
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1167 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~v 1167 (1435)
..|.+|.+...+|-.++|||+||-.||.+|...... ||. |+..+..+.+
T Consensus 240 ~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CPl--CR~~~~pskv 288 (293)
T KOG0317|consen 240 RKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CPL--CREKFQPSKV 288 (293)
T ss_pred CceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CCc--ccccCCCcce
Confidence 569999999999999999999999999999876555 774 8887766554
No 155
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00082 Score=71.00 Aligned_cols=50 Identities=40% Similarity=0.920 Sum_probs=37.2
Q ss_pred hcccccCCCCCCcc--chhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000537 1114 SLAICGICNDPPED--AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1166 (1435)
Q Consensus 1114 ~~~~C~iC~d~~e~--~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1166 (1435)
...-|++|++..+. ++.+.|||+||.+||.+.+.. ..+||. |+.++....
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~--C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPT--CRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCC--cccccchhh
Confidence 44779999998765 456999999999999887754 457886 554554433
No 156
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.27 E-value=0.0079 Score=71.26 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=92.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
.+..|||..-....+++...|+..|+....+.|++.+..|..-+.+|+. ....+|+ .++.++.|++..--+.||+||.
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~~~lv-vTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKTSILV-VTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-CccceEE-EehhhhccCCCccccccccccC
Confidence 3578999999999999999999999999999999999999999999997 5555555 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEe
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTV 1389 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrLi~ 1389 (1435)
+=.+.....|+||+.|-|.+- .-|-|++
T Consensus 339 p~~~klFvhRVgr~aragrtg--~aYs~V~ 366 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTG--RAYSLVA 366 (529)
T ss_pred CCCCceEEEEecchhhccccc--eEEEEEe
Confidence 999999999999999999764 3344444
No 157
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.22 E-value=0.082 Score=58.58 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=27.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCc-cEEEccCCCchHHHHHHHHHHc
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILKE 714 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rG-GILADEMGLGKTlqaIALI~~~ 714 (1435)
+|-+.|+.|+.-++.. .+ .++.--.|.|||-+..+++...
T Consensus 1 ~ln~~Q~~Ai~~~~~~-------~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 1 KLNESQREAIQSALSS-------NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp ---HHHHHHHHHHCTS-------SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-------CCCEEEECCCCCChHHHHHHHHHHh
Confidence 3778999999887743 33 6778888999997777776553
No 158
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.07 E-value=0.003 Score=51.57 Aligned_cols=37 Identities=43% Similarity=1.048 Sum_probs=32.5
Q ss_pred ccCCCCCCccch-hcccCcccchhhhhhhcc-cCCCCCC
Q 000537 1118 CGICNDPPEDAV-VSICGHVFCNQCICERLT-ADDNQCP 1154 (1435)
Q Consensus 1118 C~iC~d~~e~~v-vt~CgHvfC~~Ci~e~l~-~~~~~Cp 1154 (1435)
|++|.+....++ +++|+|.||..|+..++. .....||
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP 39 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCP 39 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCC
Confidence 789999999998 899999999999999988 4555676
No 159
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=95.98 E-value=0.014 Score=69.00 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=93.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCC
Q 000537 1281 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1360 (1435)
Q Consensus 1281 eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1360 (1435)
.--|||+.-+...+.++..|...||+...|+.+....+|..+-++|-+ +++.|+..+ -+.|-|++=.....||+.+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~PvI~AT-~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPVIAAT-VSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCEEEEE-eccccccCCcceeEEEecCch
Confidence 356999999999999999999999999999999999999999999998 778887754 778899999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEE
Q 000537 1361 WNPTTEDQAIDRAHRIGQTRPVSVL 1385 (1435)
Q Consensus 1361 WNPa~e~QAIGRahRIGQtr~V~Vy 1385 (1435)
=|-+..-|--||++|-|-..=.+.|
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhhHHHHHhccccccCCCccceeee
Confidence 9999999999999999976655555
No 160
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.034 Score=73.77 Aligned_cols=169 Identities=17% Similarity=0.147 Sum_probs=104.5
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccc
Q 000537 660 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 739 (1435)
Q Consensus 660 ~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 739 (1435)
+|..-...+|-++|++|++-+.+- .+.++|--.|.|||+.+-..|......
T Consensus 111 ~~~~~~~F~LD~fQ~~a~~~Ler~-------esVlV~ApTssGKTvVaeyAi~~al~~---------------------- 161 (1041)
T COG4581 111 PPAREYPFELDPFQQEAIAILERG-------ESVLVCAPTSSGKTVVAEYAIALALRD---------------------- 161 (1041)
T ss_pred cHHHhCCCCcCHHHHHHHHHHhCC-------CcEEEEccCCCCcchHHHHHHHHHHHc----------------------
Confidence 344445678999999999988743 457999999999999986555432110
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 000537 740 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSR 818 (1435)
Q Consensus 740 ~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r 818 (1435)
...+.-..|.. |..|=-+++...+..- .-.+-++.|+..
T Consensus 162 ---------------------------------------~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~ 201 (1041)
T COG4581 162 ---------------------------------------GQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVS 201 (1041)
T ss_pred ---------------------------------------CCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceeccee
Confidence 11267777864 6678778887776521 122345666543
Q ss_pred CCCcccccCCCEEEEechhhhcccCCCCCCCchhHHHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccc
Q 000537 819 TKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 898 (1435)
Q Consensus 819 ~k~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~ 898 (1435)
.. .++.++++|-++|++=+.. +.
T Consensus 202 IN-----~~A~clvMTTEILRnMlyr----------------g~------------------------------------ 224 (1041)
T COG4581 202 IN-----PDAPCLVMTTEILRNMLYR----------------GS------------------------------------ 224 (1041)
T ss_pred eC-----CCCceEEeeHHHHHHHhcc----------------Cc------------------------------------
Confidence 32 4567888888999753321 00
Q ss_pred cccCcccccCccEEEEcCCcccCChhhH-HH-HHHHhc-ccCcEEEEecccCCCChhhhhhhcccc
Q 000537 899 IVAGPLAKVGWFRVVLDEAQSIKNHRTQ-VA-RACWGL-RAKRRWCLSGTPIQNAIDDLYSYFRFL 961 (1435)
Q Consensus 899 ~~~~pL~~i~W~rVILDEAH~IKN~~T~-~s-kAl~~L-~A~~RwlLTGTPIqN~l~DLyslL~FL 961 (1435)
..+..+ .+||+||.|+|....-. .+ ..+..| +.-+-++||||- . +.+++...+.-+
T Consensus 225 ---~~~~~i--~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv-~-N~~EF~~Wi~~~ 283 (1041)
T COG4581 225 ---ESLRDI--EWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV-P-NAEEFAEWIQRV 283 (1041)
T ss_pred ---cccccc--ceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC-C-CHHHHHHHHHhc
Confidence 012333 45999999999874322 22 233334 444789999993 2 345555444433
No 161
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.59 E-value=0.011 Score=66.89 Aligned_cols=46 Identities=35% Similarity=0.770 Sum_probs=35.9
Q ss_pred cccccCCCCCCcc--------chhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000537 1115 LAICGICNDPPED--------AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1163 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~--------~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1163 (1435)
...|++|.+...+ +++++|+|.||..||.+++.. ...||. |+..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPl--CR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPV--CRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCC--CCCEee
Confidence 4689999987543 367899999999999998764 567885 877654
No 162
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.55 E-value=0.0078 Score=51.57 Aligned_cols=44 Identities=36% Similarity=0.961 Sum_probs=36.3
Q ss_pred ccccCCCCCCccchhcccCcc-cchhhhhhhcccCCCCCCCccccccc
Q 000537 1116 AICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHv-fC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
..|.+|.+.+.+.++.+|||. ||.+|+..++. ....||. |+..+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~--Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPI--CRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTT--TTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCc--CChhh
Confidence 469999999999999999999 99999999887 6667884 77654
No 163
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.48 E-value=0.0048 Score=51.33 Aligned_cols=30 Identities=37% Similarity=0.912 Sum_probs=19.8
Q ss_pred ccCCCCCCcc----chhcccCcccchhhhhhhccc
Q 000537 1118 CGICNDPPED----AVVSICGHVFCNQCICERLTA 1148 (1435)
Q Consensus 1118 C~iC~d~~e~----~vvt~CgHvfC~~Ci~e~l~~ 1148 (1435)
|++|.+ ..+ |++.+|||+||.+|+......
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 778877 444 788889999999999998764
No 164
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.40 E-value=0.0079 Score=72.57 Aligned_cols=48 Identities=33% Similarity=0.710 Sum_probs=39.8
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccccccccc
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1165 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~ 1165 (1435)
...|++|.+...+|++++|+|.||..||..++... ..|| .|+..+...
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP--~Cr~~~~~~ 73 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCP--LCRAEDQES 73 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCC--CCCCccccc
Confidence 35799999999999999999999999999988653 4687 487766543
No 165
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.39 E-value=0.07 Score=66.47 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=60.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccccccccc
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 747 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 747 (1435)
+|-..|..||...+++-. .|+--..|.|||++.-+.+.. ...
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyh-l~~------------------------------ 451 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYH-LAR------------------------------ 451 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHH-HHH------------------------------
Confidence 477899999999998644 577888999999998555432 110
Q ss_pred ccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChhh-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 000537 748 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRTK 820 (1435)
Q Consensus 748 ~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~SL-L~QW~~EI~k~~~~~~~L~VlvyhG~~r~k 820 (1435)
+-.+++||++|..+ +.|-++-|++- .|+|+..-...|+.
T Consensus 452 -----------------------------~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE~ 491 (935)
T KOG1802|consen 452 -----------------------------QHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRED 491 (935)
T ss_pred -----------------------------hcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhhh
Confidence 12467999999985 79999999753 48888877766543
No 166
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0083 Score=72.81 Aligned_cols=53 Identities=30% Similarity=0.758 Sum_probs=41.2
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccC--CCCCCCccccccccccch
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLSLSSV 1167 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~--~~~Cp~~~C~~~l~~~~v 1167 (1435)
...|+||.+++.-|+.+.|||+||..||..++... ..-|-++-|...+....+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 57899999999999999999999999999987543 333334468776655433
No 167
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.24 E-value=0.01 Score=46.66 Aligned_cols=37 Identities=46% Similarity=1.053 Sum_probs=31.6
Q ss_pred ccCCCCCCccchhcccCcccchhhhhhhcccCCCCCC
Q 000537 1118 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1154 (1435)
Q Consensus 1118 C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp 1154 (1435)
|++|.+....+++.+|+|.||..|+..++......||
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP 37 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCP 37 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCC
Confidence 6789888888889999999999999998875555676
No 168
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.02 E-value=0.14 Score=68.93 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=72.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc--C
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA--C 1352 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A--n 1352 (1435)
.+.++|||.....+++.+...|.. .+++... .+.. ..|.+++++|+. ++..||| .+....+|+++..- .
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~-~~~~iLl-gt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNN-GEKAILL-GTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHh-CCCeEEE-EcceeecccccCCCceE
Confidence 456899999999999999999875 3444332 3322 478999999997 5556776 55999999999854 4
Q ss_pred EEEEecCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000537 1353 HVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1384 (1435)
Q Consensus 1353 ~VI~lDp~W-NPa-----------------------------~e~QAIGRahRIGQtr~V~V 1384 (1435)
.||+.-+|+ +|. ...||+||+.|-.+.+-|.+
T Consensus 748 ~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 748 CLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 566666565 332 23499999999887776533
No 169
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.0092 Score=66.98 Aligned_cols=49 Identities=29% Similarity=0.705 Sum_probs=39.5
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcccCCC-CCCCccccccccccc
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDN-QCPTRNCKIRLSLSS 1166 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~-~Cp~~~C~~~l~~~~ 1166 (1435)
..|.+|.+.++.|.-++|||+||.-|+...++.... .||. |+....+..
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cpl--CRak~~pk~ 265 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPL--CRAKVYPKK 265 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHHHHhhccccCch--hhhhccchh
Confidence 469999999999999999999999999996655544 4885 776554433
No 170
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=94.48 E-value=0.2 Score=58.87 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHH
Q 000537 669 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 669 L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~ 712 (1435)
.+|.|++-..-+.+.-... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666655544322 3367777899999999876654
No 171
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=94.48 E-value=0.2 Score=58.87 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHH
Q 000537 669 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 669 L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~ 712 (1435)
.+|.|++-..-+.+.-... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666655544322 3367777899999999876654
No 172
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.18 E-value=0.022 Score=52.87 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=34.3
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCC
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPT 1155 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~ 1155 (1435)
..|++|.+.+.+||+++|||+|++.||..++......||.
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~ 44 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF 44 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC
Confidence 4699999999999999999999999999999987788885
No 173
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.18 E-value=0.027 Score=45.83 Aligned_cols=39 Identities=41% Similarity=0.921 Sum_probs=30.9
Q ss_pred cccCCCCCCccch-hcccCcccchhhhhhhcccCCCCCCC
Q 000537 1117 ICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPT 1155 (1435)
Q Consensus 1117 ~C~iC~d~~e~~v-vt~CgHvfC~~Ci~e~l~~~~~~Cp~ 1155 (1435)
.|.+|.+....++ +.+|+|.||..|+..++......||.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~ 40 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL 40 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCC
Confidence 3889998875554 45599999999999998776667874
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.11 E-value=0.13 Score=57.35 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=21.9
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCChh
Q 000537 908 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAID 952 (1435)
Q Consensus 908 ~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~ 952 (1435)
....|||||||++... ..-..+.++....+++++|=|.|....
T Consensus 119 ~~~~iIvDEaQN~t~~--~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPE--ELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -SEEEEE-SGGG--HH--HHHHHHTTB-TT-EEEEEE--------
T ss_pred cceEEEEecccCCCHH--HHHHHHcccCCCcEEEEecCceeecCC
Confidence 3468999999998543 333456677788999999999887543
No 175
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.87 E-value=0.32 Score=62.76 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcE-EecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCc------
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQY-RRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNM------ 1348 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~-~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~StkAGg~GLNL------ 1348 (1435)
.|.-.+.|+.+..+ ..+...|... +++ +.+.|..+ .|..++++|+.. +.-.||+ .+.+..+|+++
T Consensus 470 ~G~~lvLfTS~~~~-~~~~~~l~~~-l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~-gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAFSHI-SAIGQLVELG-IPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLI-AAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechHHHH-HHHHHHHHhh-cCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEE-eCCccccccccCCccCC
Confidence 45556666666554 5566666543 222 45556543 568899999985 3345555 66899999999
Q ss_pred ----cccCEEEEecCCCCcC
Q 000537 1349 ----VAACHVLLLDLWWNPT 1364 (1435)
Q Consensus 1349 ----q~An~VI~lDp~WNPa 1364 (1435)
...+.||+.-+|+-|.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCcccEEEEEeCCCCcC
Confidence 3578888988887764
No 176
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.53 E-value=0.042 Score=45.84 Aligned_cols=37 Identities=30% Similarity=0.891 Sum_probs=29.5
Q ss_pred ccCCCCCC---ccchhcccCcccchhhhhhhcccCCCCCCC
Q 000537 1118 CGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 1155 (1435)
Q Consensus 1118 C~iC~d~~---e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~ 1155 (1435)
|++|.... ..++++.|||+||..|+.... .....||.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 77887665 347899999999999999888 55567774
No 177
>PHA02926 zinc finger-like protein; Provisional
Probab=93.41 E-value=0.058 Score=59.42 Aligned_cols=47 Identities=30% Similarity=0.786 Sum_probs=35.3
Q ss_pred cccccCCCCCC------c---cchhcccCcccchhhhhhhcccC-----CCCCCCcccccccc
Q 000537 1115 LAICGICNDPP------E---DAVVSICGHVFCNQCICERLTAD-----DNQCPTRNCKIRLS 1163 (1435)
Q Consensus 1115 ~~~C~iC~d~~------e---~~vvt~CgHvfC~~Ci~e~l~~~-----~~~Cp~~~C~~~l~ 1163 (1435)
...|+||.+.. . .+++..|+|.||..||..|.... ...||. |+..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi--CR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPI--CRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCC--Ccceee
Confidence 47899999763 1 25789999999999999998643 235884 877653
No 178
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.34 E-value=0.053 Score=63.16 Aligned_cols=49 Identities=27% Similarity=0.738 Sum_probs=37.5
Q ss_pred ccccCCCCC----Ccc-chhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000537 1116 AICGICNDP----PED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1166 (1435)
Q Consensus 1116 ~~C~iC~d~----~e~-~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1166 (1435)
..|++|... +.. .++..|||.||..|+...+......|| .|+..+....
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP--~C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCP--ECDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCC--CCCCccchhh
Confidence 469999863 221 245589999999999999877777888 6988777655
No 179
>PRK10536 hypothetical protein; Provisional
Probab=93.34 E-value=0.38 Score=55.29 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=32.0
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCCh
Q 000537 910 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 951 (1435)
Q Consensus 910 ~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l 951 (1435)
..|||||||++.- .+....+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 5799999999964 445556678888999999999987653
No 180
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=93.09 E-value=0.035 Score=46.21 Aligned_cols=38 Identities=45% Similarity=0.846 Sum_probs=29.7
Q ss_pred cccCCCCCCc---cchhcccCcccchhhhhhhcccCCCCCCC
Q 000537 1117 ICGICNDPPE---DAVVSICGHVFCNQCICERLTADDNQCPT 1155 (1435)
Q Consensus 1117 ~C~iC~d~~e---~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~ 1155 (1435)
.|+||.+... ..+..+|+|.||..|+.+++... ..||.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCc
Confidence 5899998753 45667899999999999999774 57874
No 181
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=92.82 E-value=0.48 Score=51.06 Aligned_cols=99 Identities=22% Similarity=0.266 Sum_probs=63.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc----CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeecc--ccccccCcc--c
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS----SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK--AASLGLNMV--A 1350 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~----gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~Stk--AGg~GLNLq--~ 1350 (1435)
.+.++|||...-..++.+...|+.. ++....- + ..++.+++++|..+ +-.||+ ++. ..++|+|+. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~-~~~il~-~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRG-EGAILL-AVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCS-SSEEEE-EETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhc-cCeEEE-EEecccEEEeecCCCch
Confidence 5689999999999999999999875 3443333 2 34789999999994 333444 555 789999998 4
Q ss_pred cCEEEEecCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEE
Q 000537 1351 ACHVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVS 1383 (1435)
Q Consensus 1351 An~VI~lDp~W-NPa-----------------------------~e~QAIGRahRIGQtr~V~ 1383 (1435)
+..||+.-+|+ +|. ...||+||+.|-.+.+-+.
T Consensus 82 ~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 82 LRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp EEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred hheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 66788888776 342 1239999999966654433
No 182
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=92.66 E-value=0.051 Score=48.10 Aligned_cols=45 Identities=33% Similarity=0.668 Sum_probs=31.7
Q ss_pred cccccCCCCCCccchhc-ccCcccchhhhhhhcc-cCCCCCCCcccc
Q 000537 1115 LAICGICNDPPEDAVVS-ICGHVFCNQCICERLT-ADDNQCPTRNCK 1159 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt-~CgHvfC~~Ci~e~l~-~~~~~Cp~~~C~ 1159 (1435)
...|++...+..+||.+ .|+|+|..+.|.+++. ....+||...|.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 36799999999999985 8999999999999993 345689988773
No 183
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=92.60 E-value=0.088 Score=47.28 Aligned_cols=43 Identities=35% Similarity=0.906 Sum_probs=22.7
Q ss_pred cccccCCCCCCccch-hcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000537 1115 LAICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~v-vt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
.-.|.+|.+....|| ++.|.|+||..||.+.+... ||. |..+.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~---CPv--C~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSE---CPV--CHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB----SS--S--B-
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCC---CCC--cCChH
Confidence 346999999999997 68999999999998877543 663 66554
No 184
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=92.49 E-value=0.033 Score=64.03 Aligned_cols=46 Identities=35% Similarity=0.797 Sum_probs=37.4
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccc
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1164 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1164 (1435)
-.|.||.+-..-|++++|+|.||.-||..++.. .+.||. |...+.-
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~--C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPT--CCVTVTE 69 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCc--eecccch
Confidence 459999999999999999999999999999854 356775 6555443
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.19 E-value=1.7 Score=56.76 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
..|-+.|+.|+.+.+... .-.++--..|.|||.++.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~------~~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK------DLFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCC------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999987431 12567777999999998888754
No 186
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=91.86 E-value=0.069 Score=60.26 Aligned_cols=50 Identities=30% Similarity=0.640 Sum_probs=37.7
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccCCC--CCCCccccccccc
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDN--QCPTRNCKIRLSL 1164 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~--~Cp~~~C~~~l~~ 1164 (1435)
...|.||.+...-|++++|||.||.-||..++..... .|....|..++..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~ 76 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRG 76 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhccc
Confidence 3469999999999999999999999999999976543 2333444444433
No 187
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=91.51 E-value=13 Score=49.22 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=70.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc-ccC-----
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV-AAC----- 1352 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq-~An----- 1352 (1435)
.|..|||-+.....-+++.+.|.+.||+..+++-.-. .|++-+-.+.- ....|-| +|.-+|.|-++. ..+
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG-~~gaVTi-ATNMAGRGTDIkLg~~~~~V~ 503 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAG-QPGAVTI-ATNMAGRGTDIKLGGNPEFVM 503 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcC-CCCcccc-ccccccCCcccccCCCHHHHH
Confidence 6889999999999999999999999999988888754 55555555543 1223444 667778888877 333
Q ss_pred -----EEEEecCCCCcChHHHHHHhhhccC
Q 000537 1353 -----HVLLLDLWWNPTTEDQAIDRAHRIG 1377 (1435)
Q Consensus 1353 -----~VI~lDp~WNPa~e~QAIGRahRIG 1377 (1435)
+||=-+-.=+-....|--||++|.|
T Consensus 504 ~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 504 ELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred HhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 5666666655556668889999999
No 188
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=91.39 E-value=0.86 Score=59.60 Aligned_cols=102 Identities=20% Similarity=0.206 Sum_probs=76.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHVL 1355 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~--An~VI 1355 (1435)
.+.++|||...-.++..+...|...... .+...|.. .+.+.++.|...++. -+++.+...++|+|+.. ...||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 4458999999999999999999877653 45555554 455899999986654 45556689999999984 47888
Q ss_pred EecCCCC-cC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000537 1356 LLDLWWN-PT-----------------------------TEDQAIDRAHRIGQTRPVSV 1384 (1435)
Q Consensus 1356 ~lDp~WN-Pa-----------------------------~e~QAIGRahRIGQtr~V~V 1384 (1435)
+.-.||- |. ...||+||+.|--+.+-|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 8888774 43 23499999999555555554
No 189
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=91.18 E-value=0.69 Score=62.36 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHH
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 711 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI 711 (1435)
.+.+|+|.+.+..+.+..... +-+++--.+|.|||+..|.-+
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~ 285 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPA 285 (850)
T ss_pred CccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHH
Confidence 357899998777665543321 234555589999999875443
No 190
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=91.15 E-value=0.5 Score=61.07 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=29.8
Q ss_pred EEEEcCCcccCChhhHHHHHHHhcccCcEEEEeccc
Q 000537 911 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 946 (1435)
Q Consensus 911 rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTP 946 (1435)
.||+||-|++... .+.+.++.+|+.-..+=.+||-
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 4999999999875 7889999999888877777773
No 191
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.69 E-value=1.3 Score=60.40 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC--cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHV 1354 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~--An~V 1354 (1435)
.+.++|||.....++..+...|..... .+..+.-+++...|.+++++|+. .+-.||+ .+.+..+|+++.+ ...|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~iLl-G~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKAILL-GTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCeEEE-ecCcccCccccCCCceEEE
Confidence 345778877778888888888875422 12222223333458999999997 3344666 5688899999985 3788
Q ss_pred EEecCCC-CcCh-----------------------------HHHHHHhhhccCCCCcEEE
Q 000537 1355 LLLDLWW-NPTT-----------------------------EDQAIDRAHRIGQTRPVSV 1384 (1435)
Q Consensus 1355 I~lDp~W-NPa~-----------------------------e~QAIGRahRIGQtr~V~V 1384 (1435)
|+.-+|+ +|.. ..|++||+.|-.+.+-|.|
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 8888777 5541 1499999999887776533
No 192
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.96 E-value=0.21 Score=57.35 Aligned_cols=56 Identities=25% Similarity=0.505 Sum_probs=47.6
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhh
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKAT 1172 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vfs~~~ 1172 (1435)
..+|.||...+..|+...|+|.||..||......+-..|+ .|+..+..+-++.+..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Ca--vCR~pids~i~~~psl 62 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCA--VCRFPIDSTIDFEPSL 62 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCc--eecCCCCcchhcchhh
Confidence 4789999999999999999999999999999888888898 4998887766655433
No 193
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.61 E-value=1.4 Score=57.48 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-------CCcEEecCCCCCHHHHHHHHHHHhc---CCC----ccEEEeecccccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNT---LPE----VSVMIMSLKAASL 1344 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~-------gI~~~rldGsms~~qR~~aI~~Fn~---d~~----v~VLL~StkAGg~ 1344 (1435)
-.+-+|||-..-.+++-+....+.. ++.-+.+ .--+..+=.+++.+|.+ +++ +.+.+ .-...++
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aV-cRGKVSE 637 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAV-CRGKVSE 637 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEE-ecccccC
Confidence 3455899988888888885554432 2221111 11123344556666754 122 22233 4456789
Q ss_pred ccCcc--ccCEEEEecCCCCcC
Q 000537 1345 GLNMV--AACHVLLLDLWWNPT 1364 (1435)
Q Consensus 1345 GLNLq--~An~VI~lDp~WNPa 1364 (1435)
||+.- .+..||+..+++=|.
T Consensus 638 GlDFsD~~~RaVI~tGlPyP~~ 659 (945)
T KOG1132|consen 638 GLDFSDDNGRAVIITGLPYPPV 659 (945)
T ss_pred CCCccccCCceeEEecCCCCCC
Confidence 99987 677888888887544
No 194
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=89.04 E-value=0.49 Score=55.47 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=78.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEec
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1358 (1435)
.|..-|||+-...-.+-+...|+.+||..-.|+..+-+.+|.-+-+.|-. ++++|++.+ -|.|.|++-.....||+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqvivat-vafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQVIVAT-VAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEEEEEE-eeecccCCCCCeeEEEecc
Confidence 56777899888888999999999999999999999999999988888877 889999855 7889999999999999999
Q ss_pred CCCCcChHHHH
Q 000537 1359 LWWNPTTEDQA 1369 (1435)
Q Consensus 1359 p~WNPa~e~QA 1369 (1435)
++-.-...-||
T Consensus 394 l~ksienyyqa 404 (695)
T KOG0353|consen 394 LPKSIENYYQA 404 (695)
T ss_pred cchhHHHHHHH
Confidence 88777777783
No 195
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.51 E-value=3 Score=46.21 Aligned_cols=39 Identities=28% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHH
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 711 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI 711 (1435)
+|-+-|++++..++.... +-.+|.-..|.|||..+-+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-----~~~~l~G~aGtGKT~~l~~~~ 39 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-----RVSVLQGPAGTGKTTLLKALA 39 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-----SEEEEEESTTSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----eEEEEEECCCCCHHHHHHHHH
Confidence 367899999999986432 225676778999998664443
No 196
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.30 E-value=3 Score=56.04 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=68.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1356 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--~An~VI~ 1356 (1435)
.+.+++|+.....+|+.+...|....++. ...|... .|.+++++|+. ++-.||+ .+....+|+++. .+..||+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~-~~~~vLl-G~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR-GEQQILL-GLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc-CCCeEEE-ecchhhCCCCCCCCCeEEEEE
Confidence 45678888888888888888887655444 5555322 35679999997 4455666 458899999996 4566677
Q ss_pred ecCC-CCcCh-----------------------------HHHHHHhhhccCCCCcEE
Q 000537 1357 LDLW-WNPTT-----------------------------EDQAIDRAHRIGQTRPVS 1383 (1435)
Q Consensus 1357 lDp~-WNPa~-----------------------------e~QAIGRahRIGQtr~V~ 1383 (1435)
.-+| .+|.. ..|++||+.|--..+-|.
T Consensus 721 ~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv 777 (820)
T PRK07246 721 TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAV 777 (820)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEE
Confidence 6655 34521 239999999966666553
No 197
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=88.28 E-value=0.27 Score=57.77 Aligned_cols=52 Identities=27% Similarity=0.802 Sum_probs=42.6
Q ss_pred HHHHhhhhcccccCCCCCCccchhcccCcccchhhhhhhcccC-CCCCCCccc
Q 000537 1107 LLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTAD-DNQCPTRNC 1158 (1435)
Q Consensus 1107 ll~~le~~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~-~~~Cp~~~C 1158 (1435)
|-=.+.++...|.||.+...+--+.+|||++|..|+..|-..+ ...||.-.|
T Consensus 361 LYceMgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRc 413 (563)
T KOG1785|consen 361 LYCEMGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRC 413 (563)
T ss_pred HHHHccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceee
Confidence 3334666778899999999998899999999999999998776 678996444
No 198
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=88.26 E-value=2.2 Score=44.89 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCC-------cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEEEEecCCC-
Q 000537 1292 MLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHVLLLDLWW- 1361 (1435)
Q Consensus 1292 ~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~--An~VI~lDp~W- 1361 (1435)
.++.+...++..++ ..+.+-| ....+..++++.|....+..||+ ++...++|+|+.. +..||+.-.|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~iL~-~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAILL-ATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEEEE-EccceecceecCCCCeeEEEEEecCCC
Confidence 34455555555443 3344444 34446899999999754334555 5556999999984 56777777664
Q ss_pred CcC
Q 000537 1362 NPT 1364 (1435)
Q Consensus 1362 NPa 1364 (1435)
||.
T Consensus 81 ~~~ 83 (141)
T smart00492 81 YPD 83 (141)
T ss_pred CCC
Confidence 444
No 199
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.81 E-value=0.065 Score=62.46 Aligned_cols=47 Identities=36% Similarity=0.834 Sum_probs=39.0
Q ss_pred ccccCCCCCCccchhc-ccCcccchhhhhhhcccCCCCCCCccccccccc
Q 000537 1116 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1164 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt-~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1164 (1435)
..|++|.+.......+ .|+|-||.+||...+....+.||. |+..+..
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecpt--cRk~l~S 91 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPT--CRKKLVS 91 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCch--HHhhccc
Confidence 5799999887776554 599999999999999999999996 7766543
No 200
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=87.55 E-value=1.7 Score=54.65 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=32.8
Q ss_pred CccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 664 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 664 ~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
.....|-+-|+.|+.+...... + -++=-.+|.|||.+..-+|..
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~k~--l----~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINNKD--L----LIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred cCCccccHHHHHHHHHHhccCC--c----eEeeCCCCCCceeeHHHHHHH
Confidence 3455688899999999886531 1 355567899999998777754
No 201
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.40 E-value=0.18 Score=43.46 Aligned_cols=48 Identities=31% Similarity=0.692 Sum_probs=40.7
Q ss_pred hhcccccCCCCCCccchhcccCc-ccchhhhhhhcccCCCCCCCccccccc
Q 000537 1113 ASLAICGICNDPPEDAVVSICGH-VFCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1113 ~~~~~C~iC~d~~e~~vvt~CgH-vfC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
+..++|-||.+.|-+.|+-.||| -+|.+|-.+.++.....||. |+..+
T Consensus 5 ~~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPi--CRapi 53 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPI--CRAPI 53 (62)
T ss_pred ccccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcc--hhhHH
Confidence 34588999999999999999999 68999999998887888985 66543
No 202
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.38 E-value=1.4 Score=57.50 Aligned_cols=56 Identities=27% Similarity=0.218 Sum_probs=40.3
Q ss_pred cEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----cc--cccCCCEEEEechhhh
Q 000537 781 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----PC--ELAKFDVVITTYSIVS 839 (1435)
Q Consensus 781 ~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~----~~--~L~~~DVVITTY~~L~ 839 (1435)
.+||++|.. +..|+.+-+++.|+ .-.+.+||..-.... .. .-++.+|||-|.+.+-
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 489999985 78999999999885 245888887643321 11 1246789999887764
No 203
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.84 E-value=2.2 Score=56.37 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=70.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCC-------cEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeec-cccccccC
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSL-KAASLGLN 1347 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~St-kAGg~GLN 1347 (1435)
.+..+|||...-..|+.+...+...|+ ..+.+.+.- ..++++++++|... +...||+... ...+||+|
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 457888888888888888887765432 223333332 25789999999753 2334555332 56789999
Q ss_pred cc--ccCEEEEecCCC-CcC------------------------------hHHHHHHhhhccCCCCcE
Q 000537 1348 MV--AACHVLLLDLWW-NPT------------------------------TEDQAIDRAHRIGQTRPV 1382 (1435)
Q Consensus 1348 Lq--~An~VI~lDp~W-NPa------------------------------~e~QAIGRahRIGQtr~V 1382 (1435)
+. .+..||++-+|+ ||. ...||+||+.|--+-+-+
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ 667 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGS 667 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEE
Confidence 98 478888998887 553 124999999996665544
No 204
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=86.68 E-value=2.9 Score=55.43 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=38.7
Q ss_pred CcEEEEEChhhH----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhhc
Q 000537 780 AGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 840 (1435)
Q Consensus 780 k~tLIVcP~SLL----~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~~L~~ 840 (1435)
+++-||.++--| ..|...+.+|++ |+|-+..+..........-.+||+-+|-..|.-
T Consensus 127 kgVhVVTvNdYLA~RDae~m~~vy~~LG----Ltvg~i~~~~~~~err~aY~~DItYgTn~e~gF 187 (939)
T PRK12902 127 KGVHVVTVNDYLARRDAEWMGQVHRFLG----LSVGLIQQDMSPEERKKNYACDITYATNSELGF 187 (939)
T ss_pred CCeEEEeCCHHHHHhHHHHHHHHHHHhC----CeEEEECCCCChHHHHHhcCCCeEEecCCcccc
Confidence 457888888755 679999999875 777766543333333334478898888777653
No 205
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=86.18 E-value=4.3 Score=53.67 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=65.8
Q ss_pred eEEEEcccHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCcc--ccCEEE
Q 000537 1282 KAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNMV--AACHVL 1355 (1435)
Q Consensus 1282 KVIVFSQ~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~StkAGg~GLNLq--~An~VI 1355 (1435)
+++||.....+++.+...|... +.+ +...|. ..|.++++.|.+. ++..||+. +....+|+++. ....||
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g-~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFG-LQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEE-eccccccccCCCCceEEEE
Confidence 4677777778888888888643 333 444564 3578899888753 34456664 58889999997 468888
Q ss_pred EecCCC-CcC-----------------------------hHHHHHHhhhccCCCCcE
Q 000537 1356 LLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPV 1382 (1435)
Q Consensus 1356 ~lDp~W-NPa-----------------------------~e~QAIGRahRIGQtr~V 1382 (1435)
+.-+|+ +|. ...|++||+.|-.+.+-+
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~ 667 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGR 667 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEE
Confidence 888776 342 123888888886666554
No 206
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.10 E-value=0.32 Score=55.17 Aligned_cols=43 Identities=35% Similarity=0.890 Sum_probs=37.3
Q ss_pred ccccCCCCCCccchhc-ccCcccchhhhhhhcccCCCCCCCccccc
Q 000537 1116 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKI 1160 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt-~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~ 1160 (1435)
..|+.|......|+-+ .|+|.||.+||...|...+..|| +|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cp--nC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCP--NCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCC--Cccc
Confidence 4599999988899887 69999999999999999999999 4653
No 207
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.01 E-value=0.46 Score=53.95 Aligned_cols=46 Identities=33% Similarity=0.813 Sum_probs=36.0
Q ss_pred hhcccccCCCCCCccch-hcccCcccchhhhhhhcccC-CCCCCCccccc
Q 000537 1113 ASLAICGICNDPPEDAV-VSICGHVFCNQCICERLTAD-DNQCPTRNCKI 1160 (1435)
Q Consensus 1113 ~~~~~C~iC~d~~e~~v-vt~CgHvfC~~Ci~e~l~~~-~~~Cp~~~C~~ 1160 (1435)
++..+|++|.++|..|. +.+|+|++|.-|+......+ .-.||. |..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~--Cg~ 284 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPL--CGE 284 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCc--cCC
Confidence 34578999999999985 56799999999999876543 567885 543
No 208
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=85.83 E-value=5.2 Score=51.90 Aligned_cols=42 Identities=26% Similarity=0.162 Sum_probs=33.8
Q ss_pred cCccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCC
Q 000537 907 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 950 (1435)
Q Consensus 907 i~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~ 950 (1435)
..++.||||||-++- ....++.+..+....|++|-|=|-|-.
T Consensus 264 l~~dvlIvDEaSMvd--~~lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 264 LHLDVLVVDEASMVD--LPMMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred CCCCeEEEChHhccc--HHHHHHHHHhcccCCEEEEecchhhcC
Confidence 356899999999995 345667777888899999999887754
No 209
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.60 E-value=0.25 Score=54.64 Aligned_cols=50 Identities=22% Similarity=0.584 Sum_probs=39.8
Q ss_pred ccccCCCCC-----Cccchhcc-cCcccchhhhhhhcccCCCCCCCcccccccccc
Q 000537 1116 AICGICNDP-----PEDAVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1165 (1435)
Q Consensus 1116 ~~C~iC~d~-----~e~~vvt~-CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~ 1165 (1435)
..|++|... ....++.| |.|-+|..|+...++...-+||.+.|..-|+..
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 469999732 22234566 999999999999999999999999998776553
No 210
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.36 E-value=3.7 Score=50.96 Aligned_cols=98 Identities=20% Similarity=0.180 Sum_probs=76.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hcCC----cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLK----DSSI----QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1350 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~----~~gI----~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1350 (1435)
.+-+.|-|+..+.+.+++-...+ +-+- .+..|.|+-+.++|.++-.+.-. ++..-+| ++.|..+|++.-.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~giI-aTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLCGII-ATNALELGIDIGH 601 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-CeeeEEE-ecchhhhcccccc
Confidence 56789999999988776644332 2221 24568899999999988776654 4544444 7899999999999
Q ss_pred cCEEEEecCCCCcChHHHHHHhhhccCC
Q 000537 1351 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ 1378 (1435)
Q Consensus 1351 An~VI~lDp~WNPa~e~QAIGRahRIGQ 1378 (1435)
-+.|+++.-+..-+...|-.||++|-..
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccCC
Confidence 9999999999999999999999999543
No 211
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=85.07 E-value=6.5 Score=52.17 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=31.1
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCC
Q 000537 908 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 950 (1435)
Q Consensus 908 ~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~ 950 (1435)
..++||||||+++-.. ...+.+..+....|++|-|=|-|-.
T Consensus 416 ~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred cCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECcccccc
Confidence 3578999999999543 4455566677888999999887643
No 212
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=84.48 E-value=6 Score=51.18 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=32.6
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCC
Q 000537 908 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 950 (1435)
Q Consensus 908 ~W~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~ 950 (1435)
.++.||||||-++-. ....+.+..++...|++|.|=|-|=.
T Consensus 259 ~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 259 PLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred cccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhhCC
Confidence 578999999999954 35566677788889999999886643
No 213
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=84.25 E-value=1.6 Score=54.10 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=40.9
Q ss_pred EEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc--cCCCEEEEechhhh
Q 000537 782 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--AKFDVVITTYSIVS 839 (1435)
Q Consensus 782 tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L--~~~DVVITTY~~L~ 839 (1435)
.|||+|+. |..|-..-|..... ...+++....|.-....+..+ ...||||.|.+.|-
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHH
Confidence 69999997 67888888876555 456888888876543332222 26789999999884
No 214
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=84.15 E-value=2.9 Score=48.65 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=34.4
Q ss_pred cEEEEEChhhH----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhhc
Q 000537 781 GTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 840 (1435)
Q Consensus 781 ~tLIVcP~SLL----~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~~L~~ 840 (1435)
++=||+.+..| .+|...+-++++ +++-............+.-..||+=.|-..+.-
T Consensus 120 ~V~vvT~NdyLA~RD~~~~~~~y~~LG----lsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~f 179 (266)
T PF07517_consen 120 GVHVVTSNDYLAKRDAEEMRPFYEFLG----LSVGIITSDMSSEERREAYAADIVYGTNSEFGF 179 (266)
T ss_dssp -EEEEESSHHHHHHHHHHHHHHHHHTT------EEEEETTTEHHHHHHHHHSSEEEEEHHHHHH
T ss_pred CcEEEeccHHHhhccHHHHHHHHHHhh----hccccCccccCHHHHHHHHhCcccccccchhhH
Confidence 46788887755 568888877764 777666654432222334467888888777754
No 215
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=83.53 E-value=0.45 Score=51.27 Aligned_cols=36 Identities=39% Similarity=0.900 Sum_probs=31.2
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccCC
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADD 1150 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~ 1150 (1435)
...|.||-..-+.||++.|||.||..|....+...+
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~ 231 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD 231 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCC
Confidence 357999999999999999999999999988765543
No 216
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=82.93 E-value=3.8 Score=48.40 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=36.4
Q ss_pred ccccCccEEEEcCCcccCChh---hHHHHHH----HhcccCcEEEEecccCCCChhhhhhhc
Q 000537 904 LAKVGWFRVVLDEAQSIKNHR---TQVARAC----WGLRAKRRWCLSGTPIQNAIDDLYSYF 958 (1435)
Q Consensus 904 L~~i~W~rVILDEAH~IKN~~---T~~skAl----~~L~A~~RwlLTGTPIqN~l~DLyslL 958 (1435)
|....|.+|-+||.|...-.. -.-++++ ++.+.--.+.||+|-..|-++|.-.+|
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il 272 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDIL 272 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHH
Confidence 444557789999999764211 1123333 334566679999999999888876654
No 217
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.80 E-value=7.4 Score=47.84 Aligned_cols=111 Identities=23% Similarity=0.213 Sum_probs=64.4
Q ss_pred cEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCcccc--cCCCEEEEechhhhcccCCCCCCCchhHHHH
Q 000537 781 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT-KDPCEL--AKFDVVITTYSIVSMEVPKQPLGDKEDEEEK 856 (1435)
Q Consensus 781 ~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~-k~~~~L--~~~DVVITTY~~L~~ev~k~~~~~~~de~ek 856 (1435)
..|||.|+- |..|-.+=+..|...-.++....+.|.... .+.+.+ ....|+|.|.+.+..-+.+ +
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~----------~- 149 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQR----------E- 149 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhc----------h-
Confidence 479999997 445554443333222246777777776432 233222 2456999999888522110 0
Q ss_pred hhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCCcccCC--hhhHHHHHHHhc
Q 000537 857 MKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACWGL 934 (1435)
Q Consensus 857 ~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN--~~T~~skAl~~L 934 (1435)
...+.-..-..+|+|||.++-. ........+..|
T Consensus 150 --------------------------------------------~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~L 185 (567)
T KOG0345|consen 150 --------------------------------------------AEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFL 185 (567)
T ss_pred --------------------------------------------hhhccccccceEEecchHhHhcccHHHHHHHHHHhc
Confidence 0001222345799999999865 345555667777
Q ss_pred ccCcEE-EEeccc
Q 000537 935 RAKRRW-CLSGTP 946 (1435)
Q Consensus 935 ~A~~Rw-lLTGTP 946 (1435)
...+|- +.|||-
T Consensus 186 PKQRRTGLFSATq 198 (567)
T KOG0345|consen 186 PKQRRTGLFSATQ 198 (567)
T ss_pred ccccccccccchh
Confidence 666654 567774
No 218
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.65 E-value=0.5 Score=54.36 Aligned_cols=43 Identities=30% Similarity=0.785 Sum_probs=36.0
Q ss_pred hcccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccc
Q 000537 1114 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK 1159 (1435)
Q Consensus 1114 ~~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~ 1159 (1435)
....|+||.+....|.+.+|+|.||..|+...+. ....||. |+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~--cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPV--CR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcc--cC
Confidence 3467999999999998899999999999999887 4456764 66
No 219
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=0.51 Score=54.07 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=37.7
Q ss_pred ccccCCCCCC---ccchhcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000537 1116 AICGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1116 ~~C~iC~d~~---e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
.+|.||+... ..-+++||.|.|=..|++.|+....++||. |+..+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPv--Crt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV--CRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCc--cCCCC
Confidence 6799998654 234789999999999999999999999995 87654
No 220
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=82.36 E-value=11 Score=46.98 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=93.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccc-cccCccccCEEEEe
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS-LGLNMVAACHVLLL 1357 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg-~GLNLq~An~VI~l 1357 (1435)
...++|||...---.-.|..+|++.++.|+.++--++..+-.++-..|.. ++.++||.|-++-= .=..+.++.+||||
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 45788898776666667889999999999999999999999999999998 89999999966521 23456789999999
Q ss_pred cCCCCcChHHHHHHhhhccCC----CCcEEEEEEEeCC-CH-HHHHHHHHHHH
Q 000537 1358 DLWWNPTTEDQAIDRAHRIGQ----TRPVSVLRLTVKN-TV-EDRILALQQKK 1404 (1435)
Q Consensus 1358 Dp~WNPa~e~QAIGRahRIGQ----tr~V~VyrLi~kd-TI-EErIlelq~kK 1404 (1435)
.||-+|.-....+.-+..-.+ ..+..|.-|.++= .+ =|||...++.+
T Consensus 378 ~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~ 430 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERAS 430 (442)
T ss_pred CCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHH
Confidence 999999988877765554433 3446666666642 22 24555544433
No 221
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=80.73 E-value=3.6 Score=49.78 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.0
Q ss_pred EEccCCCchHHHHHHHHHH
Q 000537 695 LADDQGLGKTISTIALILK 713 (1435)
Q Consensus 695 LADEMGLGKTlqaIALI~~ 713 (1435)
+--..|.|||+.++.++..
T Consensus 6 I~G~aGTGKTvla~~l~~~ 24 (352)
T PF09848_consen 6 ITGGAGTGKTVLALNLAKE 24 (352)
T ss_pred EEecCCcCHHHHHHHHHHH
Confidence 3445799999999988865
No 222
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=80.56 E-value=4.7 Score=42.46 Aligned_cols=70 Identities=14% Similarity=0.289 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCC----cEEecCCCCCHHHHHHHHHHHhcCCC--ccEEEeeccc--cccccCccc--cCEEEEecCCC
Q 000537 1292 MLDLLEASLKDSSI----QYRRLDGTMSVFARDKAVKDFNTLPE--VSVMIMSLKA--ASLGLNMVA--ACHVLLLDLWW 1361 (1435)
Q Consensus 1292 ~LdlLe~~L~~~gI----~~~rldGsms~~qR~~aI~~Fn~d~~--v~VLL~StkA--Gg~GLNLq~--An~VI~lDp~W 1361 (1435)
.++.+...++..++ ..+.+.+.. ..+..++++.|+...+ ..||+ ++.. .++|+||.. +..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 35555566655443 233444443 2355789999997432 23555 4343 799999984 56788877664
Q ss_pred -Cc
Q 000537 1362 -NP 1363 (1435)
Q Consensus 1362 -NP 1363 (1435)
+|
T Consensus 81 p~~ 83 (142)
T smart00491 81 PNP 83 (142)
T ss_pred CCC
Confidence 44
No 223
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=79.86 E-value=8.6 Score=51.77 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHH
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIA 709 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIA 709 (1435)
...|+-|.+-...+.+.-... .-.++--..|.|||+.-+.
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~---~~~~~eA~tGtGKT~ayll 283 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDG---PASFIEAQTGIGKTYGYLL 283 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCC---CcEEEECCCCCcHHHHHHH
Confidence 357889998666555533321 1134555889999987643
No 224
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=79.36 E-value=9.7 Score=52.08 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHH
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 708 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaI 708 (1435)
...||-|.+-...+.+.-... .-.++=-.+|.|||+--|
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYL 294 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYL 294 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHH
Confidence 357889998666665544321 113333489999998764
No 225
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=78.42 E-value=13 Score=49.37 Aligned_cols=40 Identities=30% Similarity=0.250 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
.|-.-|+.|+...+.-+.- .++--.+|.|||-++.+||-.
T Consensus 669 ~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIki 708 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIKI 708 (1100)
T ss_pred hcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHHH
Confidence 5778999999988865542 455667899999988777743
No 226
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=77.16 E-value=0.74 Score=53.79 Aligned_cols=45 Identities=36% Similarity=0.844 Sum_probs=37.4
Q ss_pred ccccCCCCCCccc-hhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000537 1116 AICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1163 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~-vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1163 (1435)
..|.+|..-..++ .++.|.|.||..||-.++.. .+.||. |...+.
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~--C~i~ih 61 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPT--CDIVIH 61 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCc--cceecc
Confidence 5799999888776 57899999999999999988 778996 655543
No 227
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=76.02 E-value=9.2 Score=49.24 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=36.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 660 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 660 ~P~~~l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
+-+|.......|||++-..-|.... ++--.+.--.-+|||..++.+|..
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g~ 56 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIGY 56 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhceE
Confidence 3445577889999999888886543 344677777899999988777754
No 228
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=75.66 E-value=1.6 Score=47.21 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=13.0
Q ss_pred cccCCCEEEEechhhhc
Q 000537 824 ELAKFDVVITTYSIVSM 840 (1435)
Q Consensus 824 ~L~~~DVVITTY~~L~~ 840 (1435)
....+||||++|..+..
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 34678999999999864
No 229
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=75.62 E-value=16 Score=48.19 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=23.5
Q ss_pred ccEEEEcCCcccCCh-h--h-----HHHHHHHhc--ccCcEEEEeccc
Q 000537 909 WFRVVLDEAQSIKNH-R--T-----QVARACWGL--RAKRRWCLSGTP 946 (1435)
Q Consensus 909 W~rVILDEAH~IKN~-~--T-----~~skAl~~L--~A~~RwlLTGTP 946 (1435)
||.|||||+-.+-+. - | .....+..+ ++++.+++-||-
T Consensus 143 yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 143 YDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 899999998654332 1 1 111122222 688999998874
No 230
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=74.41 E-value=12 Score=49.42 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=72.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1356 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--~An~VI~ 1356 (1435)
.|++|.|||.-..+.+++++.....+..++.+++..+..+. +.+ ++.+|++-+ .+..+|+++- .-+.|+.
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W---~~~~VviYT-~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW---KKYDVVIYT-PVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc---cceeEEEEe-ceEEEEeccchhhceEEEE
Confidence 78999999999999999999999999999999888665522 333 458888866 6777888886 3455665
Q ss_pred e-cC-CCCcCh--HHHHHHhhhccCCCCcEEEE
Q 000537 1357 L-DL-WWNPTT--EDQAIDRAHRIGQTRPVSVL 1385 (1435)
Q Consensus 1357 l-Dp-~WNPa~--e~QAIGRahRIGQtr~V~Vy 1385 (1435)
| .| ..-|.. ..|.+|||..+...+ +.||
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~~~e-i~v~ 384 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLLDNE-IYVY 384 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhccCe-EEEE
Confidence 5 22 234554 489999999988654 4444
No 231
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.28 E-value=27 Score=41.80 Aligned_cols=58 Identities=26% Similarity=0.247 Sum_probs=40.1
Q ss_pred EEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCcccc-cCCCEEEEechhhhc
Q 000537 782 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRT-KDPCEL-AKFDVVITTYSIVSM 840 (1435)
Q Consensus 782 tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~-k~~~~L-~~~DVVITTY~~L~~ 840 (1435)
.||+.|+. +-.|-.+++. .++..-.+++.++.|.... .....| .+-++|++|-+.+.-
T Consensus 78 alvlTPTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad 138 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLAD 138 (442)
T ss_pred EEEecchHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCcccccc
Confidence 69999998 6678888875 5555667888887775432 222233 467899999888753
No 232
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=72.38 E-value=14 Score=47.43 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc------CC--cEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCcc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS------SI--QYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMV 1349 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~------gI--~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq 1349 (1435)
+..-+|||=.-..-.+...+.|.+. +. -+.-++|+++.++..++ |...| +.+=+++||..+-..|...
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEec
Confidence 4557999988777777776666543 11 24678999998766544 77654 6666777889998888888
Q ss_pred ccCEEEE----ecCCCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000537 1350 AACHVLL----LDLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1394 (1435)
Q Consensus 1350 ~An~VI~----lDp~WNPa-----------~e~QAIGRahRIGQtr~V~VyrLi~kdTIE 1394 (1435)
+-.+||= -.-.|||. .-.||.-|++|-|.+.+..+|||+++.-.+
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 7766641 12235653 567899999999999999999999987763
No 233
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.15 E-value=3 Score=52.29 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHH
Q 000537 670 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 711 (1435)
Q Consensus 670 ~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI 711 (1435)
.|-|++++-.|++++. ++-+--.|-|||+.-+.=|
T Consensus 160 t~iq~~aipvfl~~r~-------~lAcapTGsgKtlaf~~Pi 194 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKRD-------VLACAPTGSGKTLAFNLPI 194 (593)
T ss_pred Ccccchhhhhhhcccc-------eEEeccCCCcchhhhhhHH
Confidence 5678999999997643 7888899999987654433
No 234
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=72.12 E-value=2.3 Score=39.66 Aligned_cols=39 Identities=41% Similarity=0.963 Sum_probs=28.2
Q ss_pred ccccCCCCCCcc------------c-hhcccCcccchhhhhhhcccCCCCCCC
Q 000537 1116 AICGICNDPPED------------A-VVSICGHVFCNQCICERLTADDNQCPT 1155 (1435)
Q Consensus 1116 ~~C~iC~d~~e~------------~-vvt~CgHvfC~~Ci~e~l~~~~~~Cp~ 1155 (1435)
..|.||.++..+ + +...|+|.|-..||..++.... .||.
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 459999876521 1 3467999999999999996554 7884
No 235
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.67 E-value=1.9 Score=52.69 Aligned_cols=46 Identities=33% Similarity=0.800 Sum_probs=37.6
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1163 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1163 (1435)
...|.+|......|+.++|||.||..|+...+. ....||. |+..+.
T Consensus 84 ef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~--Cr~~l~ 129 (398)
T KOG4159|consen 84 EFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPL--CRDELV 129 (398)
T ss_pred hhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcc--cccccc
Confidence 457999999999999999999999999888554 5566775 766654
No 236
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.30 E-value=2.3 Score=48.03 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=42.2
Q ss_pred EeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCc
Q 000537 1336 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1336 L~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
++++...|.|++..+.|.||+||.+-.+.....+++|+.|.|-+--
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgl 347 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 347 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccc
Confidence 4577899999999999999999999999999999999999997753
No 237
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=2.7 Score=50.42 Aligned_cols=58 Identities=28% Similarity=0.519 Sum_probs=43.3
Q ss_pred HHHhhhhcccccCCCCCC---ccchhcccCcccchhhhhhhccc-------CCCCCCCcccccccccc
Q 000537 1108 LNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCICERLTA-------DDNQCPTRNCKIRLSLS 1165 (1435)
Q Consensus 1108 l~~le~~~~~C~iC~d~~---e~~vvt~CgHvfC~~Ci~e~l~~-------~~~~Cp~~~C~~~l~~~ 1165 (1435)
+.....+...|.+|.+.. ......+|.|+||..|...+.+. ..-+||.+.|+......
T Consensus 177 ~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g 244 (445)
T KOG1814|consen 177 LEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPG 244 (445)
T ss_pred HHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCch
Confidence 445566788999999764 33567999999999999998653 23379998888765543
No 238
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.79 E-value=1.7 Score=55.59 Aligned_cols=52 Identities=27% Similarity=0.615 Sum_probs=40.9
Q ss_pred hcccccCCCCCCcc-----chhcccCcccchhhhhhhcccCCCCCCCccccccccccchh
Q 000537 1114 SLAICGICNDPPED-----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 1168 (1435)
Q Consensus 1114 ~~~~C~iC~d~~e~-----~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf 1168 (1435)
....|.||.+.... +-..+|+|+||..|+..|+.. ...||. |+..+......
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~--CR~~~~~~~~~ 346 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPT--CRTVLYDYVLW 346 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCc--chhhhhccccc
Confidence 45779999998776 678899999999999999987 667886 77654444443
No 239
>PHA02533 17 large terminase protein; Provisional
Probab=67.73 E-value=44 Score=42.91 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=28.2
Q ss_pred ccCCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHH
Q 000537 665 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 665 l~~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~ 712 (1435)
..++|.|+|+.-+.+|... +=.++.=-=..|||..+.++++
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~-------R~~ii~~aRq~GKStl~a~~al 96 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKN-------RFNACNLSRQLGKTTVVAIFLL 96 (534)
T ss_pred eecCCcHHHHHHHHHHhcC-------eEEEEEEcCcCChHHHHHHHHH
Confidence 4567999999999887421 1124444458999998866654
No 240
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.71 E-value=2.5 Score=49.44 Aligned_cols=34 Identities=35% Similarity=0.740 Sum_probs=31.2
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcccC
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLTAD 1149 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~ 1149 (1435)
..|+||.-.+..++++||+|--|..||..++.+.
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~ 456 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC 456 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhcC
Confidence 4599999999999999999999999999998754
No 241
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=67.48 E-value=28 Score=44.80 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=29.5
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc-------ccC-cEEEEecccCCCChhhhhhh
Q 000537 908 GWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSY 957 (1435)
Q Consensus 908 ~W~rVILDEAH~IKN~~T~~skAl~~L-------~A~-~RwlLTGTPIqN~l~DLysl 957 (1435)
+|..||||||| .+|-.+..+..| +.. +.+++|||-=-..+.+++.-
T Consensus 163 kYsvIIlDEAH----ERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 163 KYSVIILDEAH----ERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cccEEEEechh----hhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 46789999999 344444443332 333 66889999755555555554
No 242
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=66.89 E-value=3 Score=51.26 Aligned_cols=44 Identities=39% Similarity=0.973 Sum_probs=36.9
Q ss_pred ccccCCCCCCccchhc-ccCcccchhhhhhhcccCCCCCCCccccccc
Q 000537 1116 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt-~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
-.|++|..+..+|+.+ .|||.||..|+.+++.. ...||. |...+
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~--~~~~~ 66 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPV--CRQEL 66 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcc--ccccc
Confidence 4699999999999985 99999999999999988 667874 54443
No 243
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.64 E-value=3.2 Score=47.93 Aligned_cols=48 Identities=25% Similarity=0.707 Sum_probs=36.8
Q ss_pred cccCCCCC-----CccchhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000537 1117 ICGICNDP-----PEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1166 (1435)
Q Consensus 1117 ~C~iC~d~-----~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1166 (1435)
.|+.|..- .-...+.+|+|.+|..|+.......+..|| .|...+....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhcc
Confidence 47777532 222345799999999999999999999999 8988776643
No 244
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=66.28 E-value=9.5 Score=49.54 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred EEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccccccccccccccccCCCCCCccchhhhh
Q 000537 694 ILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQ 773 (1435)
Q Consensus 694 ILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vk~~~~~c~~~~~~~~~~~~~~~~~ 773 (1435)
|+|-+.|.|||.|.--++ .+.++...........+...+.+
T Consensus 275 IIcGeTGsGKTTQvPQFL---------------------------------------YEAGf~s~~~~~~gmIGITqPRR 315 (1172)
T KOG0926|consen 275 IICGETGSGKTTQVPQFL---------------------------------------YEAGFASEQSSSPGMIGITQPRR 315 (1172)
T ss_pred EEecCCCCCccccchHHH---------------------------------------HHcccCCccCCCCCeeeecCchH
Q ss_pred ccCCCCCcEEEEEChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhhcccCCCCCCCchhH
Q 000537 774 AKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDE 853 (1435)
Q Consensus 774 ~~~~p~k~tLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~~L~~ev~k~~~~~~~de 853 (1435)
|+--+.-..-..|+..+ .....+.+-.......+. .|-.+|-++|.+|+
T Consensus 316 -----------VAaiamAkRVa~EL~~~---~~eVsYqIRfd~ti~e~T------~IkFMTDGVLLrEi----------- 364 (1172)
T KOG0926|consen 316 -----------VAAIAMAKRVAFELGVL---GSEVSYQIRFDGTIGEDT------SIKFMTDGVLLREI----------- 364 (1172)
T ss_pred -----------HHHHHHHHHHHHHhccC---ccceeEEEEeccccCCCc------eeEEecchHHHHHH-----------
Q ss_pred HHHhhhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCCc--------------c
Q 000537 854 EEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQ--------------S 919 (1435)
Q Consensus 854 ~ek~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH--------------~ 919 (1435)
...+.--.|..||||||| +
T Consensus 365 -----------------------------------------------~~DflL~kYSvIIlDEAHERSvnTDILiGmLSR 397 (1172)
T KOG0926|consen 365 -----------------------------------------------ENDFLLTKYSVIILDEAHERSVNTDILIGMLSR 397 (1172)
T ss_pred -----------------------------------------------HHhHhhhhceeEEechhhhccchHHHHHHHHHH
Q ss_pred cCChhhHHHHHHHhcccCcEEEEecc
Q 000537 920 IKNHRTQVARACWGLRAKRRWCLSGT 945 (1435)
Q Consensus 920 IKN~~T~~skAl~~L~A~~RwlLTGT 945 (1435)
|-.-+.+.++--++++.-+.++||||
T Consensus 398 iV~LR~k~~ke~~~~kpLKLIIMSAT 423 (1172)
T KOG0926|consen 398 IVPLRQKYYKEQCQIKPLKLIIMSAT 423 (1172)
T ss_pred HHHHHHHHhhhhcccCceeEEEEeee
No 245
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=66.13 E-value=44 Score=45.01 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.9
Q ss_pred cEEEccCCCchHHHHHHHHH
Q 000537 693 GILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 693 GILADEMGLGKTlqaIALI~ 712 (1435)
.||+-+.|.|||-+.=-+++
T Consensus 68 vii~getGsGKTTqlP~~ll 87 (845)
T COG1643 68 VIIVGETGSGKTTQLPQFLL 87 (845)
T ss_pred EEEeCCCCCChHHHHHHHHH
Confidence 79999999999999855554
No 246
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.96 E-value=3.1 Score=48.09 Aligned_cols=43 Identities=30% Similarity=0.671 Sum_probs=34.2
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccccc
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1161 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~ 1161 (1435)
..|.||-..-..||++.|+|.||..|-...+.... .|+ .|..+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~--vC~~~ 284 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCY--VCSQQ 284 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCC-cce--ecccc
Confidence 55999999999999999999999999988776533 344 35443
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=65.29 E-value=4.9 Score=40.54 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=26.1
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhc--ccCcEEEEeccc
Q 000537 910 FRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTP 946 (1435)
Q Consensus 910 ~rVILDEAH~IKN~~T~~skAl~~L--~A~~RwlLTGTP 946 (1435)
..|||||+|++. +......++.+ ...-.++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 679999999983 23444555555 666789999999
No 248
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=64.68 E-value=3.7 Score=36.09 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=32.3
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccc
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1164 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~ 1164 (1435)
...|-.|.......++.+|||++|..|..-.-. +.||. |..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY---ngCPf--C~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGERY---NGCPF--CGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhhc---cCCCC--CCCcccC
Confidence 345777777777788999999999999865433 45663 6666543
No 249
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=63.11 E-value=20 Score=40.77 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
+-||+-|.+-+..|..-. ...+.++=--||-|||-..+=+++.
T Consensus 22 iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~ 64 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLAL 64 (229)
T ss_pred ceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHH
Confidence 458999999999998532 2256799999999999776555544
No 250
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.05 E-value=4.1 Score=48.76 Aligned_cols=49 Identities=33% Similarity=0.622 Sum_probs=39.3
Q ss_pred ccccCCCCCCcc---chhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000537 1116 AICGICNDPPED---AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1166 (1435)
Q Consensus 1116 ~~C~iC~d~~e~---~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~ 1166 (1435)
..|.||.|.-+. -.+.+|.|.|=..||..|++.....||. ||.......
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv--CK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV--CKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC--CCCcCCCCC
Confidence 489999986443 3579999999999999999999888995 887655443
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=61.73 E-value=86 Score=41.81 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=29.7
Q ss_pred hhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 000537 1373 AHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1416 (1435)
Q Consensus 1373 ahRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~ 1416 (1435)
+.++||.-+|.|..=-.+.|--..-.....++++.++..++.|.
T Consensus 751 ~~~~g~~v~~~~evg~~~~t~a~~~a~~ra~rq~~ae~~i~~dp 794 (830)
T PRK07003 751 ADALGKPVEVAVEVGPARRTAAALDAAERAKRQREAEQEIHADP 794 (830)
T ss_pred HHHhCCceEEEEEecccccCHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 46899999988886566778655555555556666666665554
No 252
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=55.36 E-value=4.3 Score=51.87 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCC-----HHHHHHHHHHHhcC---CCccEEEee--ccccccccCcc
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS-----VFARDKAVKDFNTL---PEVSVMIMS--LKAASLGLNMV 1349 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms-----~~qR~~aI~~Fn~d---~~v~VLL~S--tkAGg~GLNLq 1349 (1435)
+.-||+|-..-..|..+....+..|+- .++.|.-+ ..--+++++.|... +. -.||++ ..-.++|||+.
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~-GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGR-GAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCC-CeEEEEEeccccccccccc
Confidence 367899999999999999999887763 22222211 01135667777642 22 234434 23456999998
Q ss_pred c--cCEEEEecCCCC
Q 000537 1350 A--ACHVLLLDLWWN 1362 (1435)
Q Consensus 1350 ~--An~VI~lDp~WN 1362 (1435)
+ +..|+++.+|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 4 677888888874
No 253
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=55.07 E-value=31 Score=39.89 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.0
Q ss_pred cEEEccCCCchHHHHHHHH
Q 000537 693 GILADDQGLGKTISTIALI 711 (1435)
Q Consensus 693 GILADEMGLGKTlqaIALI 711 (1435)
-+|.-..|.|||..|-++.
T Consensus 45 vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILG 63 (261)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5899999999999886554
No 254
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=54.28 E-value=49 Score=43.59 Aligned_cols=67 Identities=22% Similarity=0.220 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhcccccccccccccccccccc
Q 000537 672 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 751 (1435)
Q Consensus 672 hQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vk~ 751 (1435)
.|-.++.-+.+.-.... +.-+|---.|.|||+++..++...
T Consensus 13 ~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~------------------------------------- 53 (655)
T TIGR00631 13 DQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV------------------------------------- 53 (655)
T ss_pred HHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh-------------------------------------
Confidence 78888887776543221 123577778999999997777431
Q ss_pred ccccccccCCCCCCccchhhhhccCCCCCcEEEEEChh-hHHHHHHHHHHHhcC
Q 000537 752 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTS 804 (1435)
Q Consensus 752 ~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~S-LL~QW~~EI~k~~~~ 804 (1435)
.+|+|||+|.. +..||.+|++.|++.
T Consensus 54 ---------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 54 ---------------------------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred ---------------------------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 13699999987 568999999999873
No 255
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=52.89 E-value=2.1e+02 Score=39.58 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHHh-hccCCCCCccEEEccCCCchHHHHH
Q 000537 668 PLLRHQRIALSWMVQK-ETSSLHCSGGILADDQGLGKTISTI 708 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~r-E~~~~~~rGGILADEMGLGKTlqaI 708 (1435)
+=+.+|-.|+.-.... ++....+.=||-.-.+|.|||+.=.
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA 449 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA 449 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH
Confidence 3467999999876663 3333333336778889999999863
No 256
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=51.44 E-value=10 Score=50.27 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCcc-EEEc-cCCCchHHHHH
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSGG-ILAD-DQGLGKTISTI 708 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rGG-ILAD-EMGLGKTlqaI 708 (1435)
.-|+-|.+-+.-+.+--.......++ ++.. .+|.|||+--|
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL 67 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL 67 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH
Confidence 56889998666555433321000122 3344 79999998753
No 257
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.97 E-value=7.2 Score=44.18 Aligned_cols=45 Identities=31% Similarity=0.798 Sum_probs=30.2
Q ss_pred ccccCCCCCCc-cc-hhcccCcccchhhhhhhcccCCCCCCCcccccccccc
Q 000537 1116 AICGICNDPPE-DA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1165 (1435)
Q Consensus 1116 ~~C~iC~d~~e-~~-vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~ 1165 (1435)
..|..|.--+. ++ .+|.|+|+||..|..-.... .||. |+..+...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~l--Ckk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCPL--CKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCcc---cccc--ccceeeee
Confidence 45888875443 33 58999999999998554322 6664 77665543
No 258
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=50.25 E-value=1.1e+02 Score=40.33 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=26.3
Q ss_pred CcEEEEEChh-hHHHHHHHHHHHh-c-CCCCcEEEEEeCCCCC
Q 000537 780 AGTLVVCPTS-VLRQWAEELRNKV-T-SKGSLSVLVYHGSSRT 819 (1435)
Q Consensus 780 k~tLIVcP~S-LL~QW~~EI~k~~-~-~~~~L~VlvyhG~~r~ 819 (1435)
+++||.+|+. |..|+.+++.... . ....+++.+..|...-
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nY 89 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEF 89 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCccc
Confidence 3589999986 6788888877543 1 1235677777776543
No 259
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=49.77 E-value=26 Score=45.04 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhc------CCcEEecCCCCCHHHHHHHHHHHhc-CCCccEEEeeccccccccCccccCEEEEec----CC
Q 000537 1292 MLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLGLNMVAACHVLLLD----LW 1360 (1435)
Q Consensus 1292 ~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~-d~~v~VLL~StkAGg~GLNLq~An~VI~lD----p~ 1360 (1435)
+.+.|...|.+. ++.++-|+..++.+-..++ |+. .++++-.|++|..+...|...+-.+||=.. -.
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 456666666542 5677888888886554444 763 456777777889998888888777776322 12
Q ss_pred CCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000537 1361 WNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1399 (1435)
Q Consensus 1361 WNPa-----------~e~QAIGRahRIGQtr~V~VyrLi~kdTIEErIle 1399 (1435)
+||. .-+||--|++|-|.+.|-+.|||+++++..+.|+.
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 4543 45677778888888999999999999988776653
No 260
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=48.78 E-value=24 Score=47.05 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=66.3
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCC-----CcChHHHHHHhhhccCC-CC
Q 000537 1307 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-----NPTTEDQAIDRAHRIGQ-TR 1380 (1435)
Q Consensus 1307 ~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W-----NPa~e~QAIGRahRIGQ-tr 1380 (1435)
+...+.+.+.++|+-+=..|++ +.++|+..+ ...+.|+||.+ .+||+=-|.. .-....|.+||++|.|= +.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~-g~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFRE-GNIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred ceecccccccchHHHHHHHHHh-cCeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhcccccC
Confidence 3445667777888877778887 888888865 55889999985 5666544442 33466799999999884 33
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000537 1381 PVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1417 (1435)
Q Consensus 1381 ~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1417 (1435)
.--+ |+.+..=..++.++...-......-++++..
T Consensus 602 Gdsi--LI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~ 636 (1008)
T KOG0950|consen 602 GDSI--LIIKSSEKKRVRELVNSPLKPLNSCLSNEVN 636 (1008)
T ss_pred cceE--EEeeccchhHHHHHHhccccccccccccccc
Confidence 3222 3444443444445555444444444444443
No 261
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.67 E-value=7.8 Score=47.48 Aligned_cols=46 Identities=28% Similarity=0.713 Sum_probs=35.0
Q ss_pred cccccCCCCCCc-----------------cchhcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000537 1115 LAICGICNDPPE-----------------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1115 ~~~C~iC~d~~e-----------------~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
...|.||+.+.+ .-.++||.|+|-.+|+..++..-.-.||. |+..+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPv--CR~pL 633 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPV--CRCPL 633 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCc--cCCCC
Confidence 357999996632 12468999999999999999877778885 55443
No 262
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=46.88 E-value=91 Score=43.18 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=36.1
Q ss_pred CcEEEEEChhhH-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000537 780 AGTLVVCPTSVL-----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 839 (1435)
Q Consensus 780 k~tLIVcP~SLL-----~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~~L~ 839 (1435)
+...-|.|...+ .-|..-+.+ ...+.+....| ....+.+.+.+.+|+|.|.+.+.
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~----~~G~~~~~l~g-e~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSK----LLGLRIVKLTG-ETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhcc----ccCceEEecCC-ccccchHHhhhcceEEechhHHH
Confidence 347888898754 445555443 23455555544 45556677889999999988774
No 263
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.26 E-value=2.1e+02 Score=37.86 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 672 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 672 hQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
|=.+.+..++...+ ....-||.-..|.|||..|.+++..
T Consensus 22 ~vv~~L~~aI~~gr---l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 22 HVSRALSSALERGR---LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555554322 1233499999999999988777644
No 264
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.14 E-value=47 Score=38.08 Aligned_cols=60 Identities=25% Similarity=0.213 Sum_probs=43.8
Q ss_pred cEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Cccccc-CCCEEEEechhhhc
Q 000537 781 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCELA-KFDVVITTYSIVSM 840 (1435)
Q Consensus 781 ~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k-~~~~L~-~~DVVITTY~~L~~ 840 (1435)
.+||+|-+. |..|-..|..+|-.--+..++.+|.|.-..+ +.+-|. -..||+-|...+..
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilA 174 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILA 174 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHH
Confidence 379999887 7789999988776666689999999876544 333333 34688888877653
No 265
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.65 E-value=9.7 Score=42.94 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.3
Q ss_pred ccccCCCCCCccchhcccCcccchhhhhhhcc
Q 000537 1116 AICGICNDPPEDAVVSICGHVFCNQCICERLT 1147 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~ 1147 (1435)
.-|..|..|..+||+++=||+||++||.+++.
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 45999999999999999999999999999864
No 266
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=45.03 E-value=38 Score=45.68 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=75.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-------CCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVA 1350 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~-------gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq~ 1350 (1435)
...-||||-.-..-+..+...|+.+ .+-...+++.|+..+.+++ |+..| +++=+|++|..+...|..-+
T Consensus 412 ~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdD 488 (924)
T KOG0920|consen 412 FEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDD 488 (924)
T ss_pred CCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccC
Confidence 3567999999888888887777642 2556788999998776655 77654 34555668888888888877
Q ss_pred cCEEE--------EecCC---------C-CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000537 1351 ACHVL--------LLDLW---------W-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1394 (1435)
Q Consensus 1351 An~VI--------~lDp~---------W-NPa~e~QAIGRahRIGQtr~V~VyrLi~kdTIE 1394 (1435)
.-+|| .|||. | .-+.-.||.||++| .++=..|+|+++.-.+
T Consensus 489 VvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 489 VVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYE 547 (924)
T ss_pred eEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhh
Confidence 66665 34443 2 23344577777766 6667888888765443
No 267
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=44.97 E-value=1.5e+02 Score=32.87 Aligned_cols=22 Identities=23% Similarity=0.004 Sum_probs=17.6
Q ss_pred CccEEEccCCCchHHHHHHHHH
Q 000537 691 SGGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 691 rGGILADEMGLGKTlqaIALI~ 712 (1435)
..-+|--+.|.|||..+.++..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~ 60 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACA 60 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4567888999999998877663
No 268
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=44.83 E-value=9.1 Score=44.96 Aligned_cols=47 Identities=23% Similarity=0.656 Sum_probs=36.9
Q ss_pred hcccccCCCCCCccc-hhcccCcccchhhhhhhcccCCCCCCCcccccc
Q 000537 1114 SLAICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1161 (1435)
Q Consensus 1114 ~~~~C~iC~d~~e~~-vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~ 1161 (1435)
....|++|.....+| +++.-|.+||..|+..++. .-+.||..+|...
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 346799998765554 6778899999999999987 5678998777643
No 269
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=44.58 E-value=2.3e+02 Score=33.37 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCccEE-EccCCCchHHHHHHHHH
Q 000537 669 LLRHQRIALSWMVQKETSSLHCSGGIL-ADDQGLGKTISTIALIL 712 (1435)
Q Consensus 669 L~phQk~gl~wMl~rE~~~~~~rGGIL-ADEMGLGKTlqaIALI~ 712 (1435)
..++.+..+...+++.. ..+.+| .-+.|.|||-.+-++..
T Consensus 25 ~~~~~~~~l~~~~~~~~----~~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 25 LPAADKETFKSIVKKGR----IPNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred CcHHHHHHHHHHHhcCC----CCeEEEeeCcCCCCHHHHHHHHHH
Confidence 44455555544443322 123555 89999999998877753
No 270
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.97 E-value=2.6e+02 Score=35.83 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=28.1
Q ss_pred CccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCChhhhhhhc
Q 000537 908 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYF 958 (1435)
Q Consensus 908 ~W~rVILDEAH~IKN~~T~~skAl~~L---~A~~RwlLTGTPIqN~l~DLyslL 958 (1435)
+|..+||||+|++... .....++.| ....+++|..|-.+.-+.-+.+-.
T Consensus 119 ~~kV~iIDE~~~ls~~--a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc 170 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH--SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170 (509)
T ss_pred CcEEEEEEChHhcCHH--HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHh
Confidence 4678999999999542 222222333 345667776665444444444433
No 271
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=42.16 E-value=37 Score=41.60 Aligned_cols=108 Identities=21% Similarity=0.147 Sum_probs=66.1
Q ss_pred cEEEEEChh-hHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCccccc-CCCEEEEechhhhcccCCCCCCCchhHHHHh
Q 000537 781 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSV-LVYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 857 (1435)
Q Consensus 781 ~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~V-lvyhG~~r~k~~~~L~-~~DVVITTY~~L~~ev~k~~~~~~~de~ek~ 857 (1435)
..||+.|+. |..|-.+=++..-. .-.++. +.|+|.........+. .-||||.|-..+.--.- +
T Consensus 92 RalilsptreLa~qtlkvvkdlgr-gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v---------e---- 157 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGR-GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV---------E---- 157 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhcc-ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh---------h----
Confidence 479999997 54554443333221 123444 4777776666555564 68999999877642100 0
Q ss_pred hhcCCCCCCccccCcccCCCCCCCccccccCCCCCCCcccccccCcccccCccEEEEcCCcccCC--hhhHHHHHHHhcc
Q 000537 858 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACWGLR 935 (1435)
Q Consensus 858 ~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN--~~T~~skAl~~L~ 935 (1435)
-.|.--...+||+|||..|-. ..-+..+.+.+|.
T Consensus 158 --------------------------------------------m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 158 --------------------------------------------MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred --------------------------------------------eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 001122234699999999854 4567777778884
Q ss_pred c-CcEEEEeccc
Q 000537 936 A-KRRWCLSGTP 946 (1435)
Q Consensus 936 A-~~RwlLTGTP 946 (1435)
. ...+++|||-
T Consensus 194 ~~~QTllfSatl 205 (529)
T KOG0337|consen 194 ESRQTLLFSATL 205 (529)
T ss_pred CcceEEEEeccC
Confidence 3 4689999994
No 272
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=42.08 E-value=1.8e+02 Score=39.54 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCC-CCHHHHHHHHHH
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT-MSVFARDKAVKD 1325 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGs-ms~~qR~~aI~~ 1325 (1435)
.|..|||-+.....-+.|...|.+.||++..++.. ...++-.++|.+
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~ 485 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ 485 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh
Confidence 68899999999999999999999999999999987 333333445543
No 273
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=12 Score=45.00 Aligned_cols=34 Identities=32% Similarity=0.761 Sum_probs=26.3
Q ss_pred cccccCCCCCCccc--------hhcccCcccchhhhhhhccc
Q 000537 1115 LAICGICNDPPEDA--------VVSICGHVFCNQCICERLTA 1148 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~--------vvt~CgHvfC~~Ci~e~l~~ 1148 (1435)
...|+||++..... ++..|.|.||..||..|-..
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~ 202 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQA 202 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhh
Confidence 35799999775433 34779999999999999733
No 274
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=41.35 E-value=42 Score=41.34 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=35.2
Q ss_pred EEEEEChh-hHHHHHHHHHHHhcC-CCCcEEEEEeCCCC-CC-CcccccCCCEEEEechhhhcc
Q 000537 782 TLVVCPTS-VLRQWAEELRNKVTS-KGSLSVLVYHGSSR-TK-DPCELAKFDVVITTYSIVSME 841 (1435)
Q Consensus 782 tLIVcP~S-LL~QW~~EI~k~~~~-~~~L~VlvyhG~~r-~k-~~~~L~~~DVVITTY~~L~~e 841 (1435)
.+|+||+. |..|-...|.+.... ...++++-...+.. .- ...-....||||+|...+...
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 69999987 778888887765431 11344433332111 11 122235779999999888643
No 275
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=40.93 E-value=51 Score=38.78 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.0
Q ss_pred ccEEEccCCCchHHHHHHHHH
Q 000537 692 GGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 692 GGILADEMGLGKTlqaIALI~ 712 (1435)
+-+|--+.|.|||..|-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 467889999999998866654
No 276
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=40.88 E-value=68 Score=43.28 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=81.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----cCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACH 1353 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~v-~VLL~StkAGg~GLNLq~An~ 1353 (1435)
...-+|||-.=..-++-..+.|.+ ..+.++-++|.++.++-.+ -|+..+.- +=+|++|..+-.+|......+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 456799998888888888888876 3577889999999887776 57776554 535558899999999988777
Q ss_pred EEEe----cCCCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000537 1354 VLLL----DLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1394 (1435)
Q Consensus 1354 VI~l----Dp~WNPa-----------~e~QAIGRahRIGQtr~V~VyrLi~kdTIE 1394 (1435)
||=- .+-|||. .-+.|.-|++|-|.+.+=..|||+.++..+
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 7521 1124443 233455666666668888999999986655
No 277
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=11 Score=44.89 Aligned_cols=46 Identities=30% Similarity=0.660 Sum_probs=37.0
Q ss_pred cccccCCCCCCccchhcccCc-ccchhhhhhhcccCCCCCCCcccccccc
Q 000537 1115 LAICGICNDPPEDAVVSICGH-VFCNQCICERLTADDNQCPTRNCKIRLS 1163 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgH-vfC~~Ci~e~l~~~~~~Cp~~~C~~~l~ 1163 (1435)
-.+|-||...+.+.++.||-| -+|..|..... -..+.||. |+..+.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPI--CRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPI--CRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCc--cccchH
Confidence 467999999999999999999 68999987765 44567884 776653
No 278
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=39.49 E-value=54 Score=41.60 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHHHhhc-----cCCCCCccEEEccCCCchHHHHHHHHH
Q 000537 669 LLRHQRIALSWMVQKET-----SSLHCSGGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 669 L~phQk~gl~wMl~rE~-----~~~~~rGGILADEMGLGKTlqaIALI~ 712 (1435)
.....++++.|.+.+-. +...++|.+|.--.|.|||+.+-|+..
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 45678888888887655 333567999999999999999977764
No 279
>PRK05580 primosome assembly protein PriA; Validated
Probab=38.71 E-value=1.6e+02 Score=39.05 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=57.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh-cCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
.+.++||.+.-......+.+.|++ .|+....++|+++..+|.+...+... +++.|+|.+..+. =+.+..-..||+=
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~IVVgTrsal--~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKVVIGARSAL--FLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEeccHHh--cccccCCCEEEEE
Confidence 467899999999998888888876 48889999999999999888887776 5678888654332 2344555555554
Q ss_pred c
Q 000537 1358 D 1358 (1435)
Q Consensus 1358 D 1358 (1435)
|
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 4
No 280
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=38.00 E-value=1.2e+02 Score=27.37 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=40.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec
Q 000537 1282 KAIVFS-QWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL 1339 (1435)
Q Consensus 1282 KVIVFS-Q~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St 1339 (1435)
|+.||+ .+=.....+...|++.+++|..++-....+.++++.+.......+.++++.-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECC
Confidence 466676 3445677788889999999998888877777777766665532555666553
No 281
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=37.55 E-value=1.3e+02 Score=31.72 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=56.2
Q ss_pred eEEEEcccHHHHHHHHHHHHhcCCcE--EecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecC
Q 000537 1282 KAIVFSQWTKMLDLLEASLKDSSIQY--RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1359 (1435)
Q Consensus 1282 KVIVFSQ~t~~LdlLe~~L~~~gI~~--~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1359 (1435)
.|=++||.-.+...+-..+..+|+.+ ..=.|....-.-.+.++.|.+||+++|+++- +|.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 46689999999999988998886654 5556665555678899999999999999866 454
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEE
Q 000537 1360 WWNPTTEDQAIDRAHRIGQTRPVSVLRL 1387 (1435)
Q Consensus 1360 ~WNPa~e~QAIGRahRIGQtr~V~VyrL 1387 (1435)
-=||....++.-|+.| +|||.+++-
T Consensus 65 ~~d~~~f~~~~~~a~~---~KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAAR---RKPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCC---CS-EEEEE-
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEeC
Confidence 5577777888877776 388888654
No 282
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=37.27 E-value=1.5e+02 Score=39.39 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=56.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHH----HhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASL----KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1354 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L----~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1354 (1435)
.+.+++|.+.-...+..+...| ...|++...++|+++..+|.+.++...+ +++.|++.+.......+.+.....|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEEEchHHHhcccchhcccceE
Confidence 4678999998887766555544 4458999999999999999999999887 6788888775555555555554444
Q ss_pred EE
Q 000537 1355 LL 1356 (1435)
Q Consensus 1355 I~ 1356 (1435)
|+
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 43
No 283
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=37.09 E-value=2e+02 Score=38.62 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHH
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~ 712 (1435)
..|-+-|+.|+.-++... +=.+|-.-.|.|||.++-+++.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~------~~~il~G~aGTGKTtll~~i~~ 390 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSG------DIAVVVGRAGTGKSTMLKAARE 390 (744)
T ss_pred CCCCHHHHHHHHHHhcCC------CEEEEEecCCCCHHHHHHHHHH
Confidence 468899999999887421 1257888899999988766653
No 284
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=37.08 E-value=5.5e+02 Score=27.47 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcC
Q 000537 673 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 715 (1435)
Q Consensus 673 Qk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r 715 (1435)
|...+..+.+.-.....+..=|+.-.-|.||+-.+.+++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4444444443333222223347788889999999999987643
No 285
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=36.86 E-value=1.5e+02 Score=39.19 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHcCCCCCCCccchhhhhhhccccccccccccccc
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 746 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 746 (1435)
..|..+|..++.-+.+.-.... +..+|---.|.|||+.+.+++...
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~--~~~ll~Gl~gs~ka~lia~l~~~~-------------------------------- 56 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGE--KHQTLLGVTGSGKTFTMANVIARL-------------------------------- 56 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCC--CcEEEEcCCCcHHHHHHHHHHHHh--------------------------------
Confidence 4578899999988776543221 124666777999999876655321
Q ss_pred cccccccccccccCCCCCCccchhhhhccCCCCCcEEEEEChh-hHHHHHHHHHHHhc
Q 000537 747 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVT 803 (1435)
Q Consensus 747 ~~vk~~~~~c~~~~~~~~~~~~~~~~~~~~~p~k~tLIVcP~S-LL~QW~~EI~k~~~ 803 (1435)
.+++|||+|.. ...||.+++..+++
T Consensus 57 --------------------------------~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 57 --------------------------------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred --------------------------------CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 13589999996 67899999998886
No 286
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=36.78 E-value=17 Score=42.29 Aligned_cols=44 Identities=32% Similarity=0.731 Sum_probs=29.6
Q ss_pred hcccccCCCCCCcc-chhcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000537 1114 SLAICGICNDPPED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1114 ~~~~C~iC~d~~e~-~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
.+.-|.-|.-+..- ..+.+|.|+||.+|-...- +..||. |..++
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~--C~d~V 133 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPL--CDDRV 133 (389)
T ss_pred ceEeecccCCcceeeecccccchhhhhhhhhcCc---cccCcC--cccHH
Confidence 35668888876543 4578999999999975433 345663 55443
No 287
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.76 E-value=13 Score=44.91 Aligned_cols=58 Identities=33% Similarity=0.583 Sum_probs=41.6
Q ss_pred cccccCCCCCCccc-----hhcccCcccchhhhhhhcccC-CCCCCCccccccccccchhhhhhhc
Q 000537 1115 LAICGICNDPPEDA-----VVSICGHVFCNQCICERLTAD-DNQCPTRNCKIRLSLSSVFSKATLN 1174 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~-----vvt~CgHvfC~~Ci~e~l~~~-~~~Cp~~~C~~~l~~~~vfs~~~l~ 1174 (1435)
...|++|.+.-+.+ +...|||.|-.+||+.|+.+. .-+||. |+.......++....+.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~--c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPL--CSGKATKRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcc--cCChhHHHHHHHHHHHH
Confidence 35799999875544 456799999999999999532 236774 88877776666554443
No 288
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.57 E-value=1.8e+02 Score=37.28 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=55.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEe
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1357 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1357 (1435)
.+.++||.+........+.+.|++. +.....++|.++..+|.+...+-.. ++..|+|.+..+. =+-+..-..||+=
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~IVVGTrsal--f~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILVVIGTRSAL--FLPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCEEECChHHH--cCcccCCCEEEEE
Confidence 4678999999999888888888754 7888999999999999888777665 6677777554332 2234444555544
Q ss_pred c
Q 000537 1358 D 1358 (1435)
Q Consensus 1358 D 1358 (1435)
|
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 3
No 289
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.47 E-value=18 Score=44.39 Aligned_cols=54 Identities=37% Similarity=0.821 Sum_probs=39.1
Q ss_pred cccccCCC-CCCcc---chhcccCcccchhhhhhhcc-----cCCCCCCCccccccccccchh
Q 000537 1115 LAICGICN-DPPED---AVVSICGHVFCNQCICERLT-----ADDNQCPTRNCKIRLSLSSVF 1168 (1435)
Q Consensus 1115 ~~~C~iC~-d~~e~---~vvt~CgHvfC~~Ci~e~l~-----~~~~~Cp~~~C~~~l~~~~vf 1168 (1435)
...|.+|. +.+.. ..+..|+|-||.+|+..++. +....||...|...+......
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~ 208 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCR 208 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHh
Confidence 35799998 33322 23578999999999998876 345689998898877665443
No 290
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=36.03 E-value=1.1e+02 Score=29.38 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000537 1279 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1338 (1435)
Q Consensus 1279 ~~eKVIVFSQ------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S 1338 (1435)
...+|+||+. +=..-..+.+.|+..|++|..++=....+.|+.+. +......+.++++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~-~~~g~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLK-EYSNWPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHH-HHhCCCCCCEEEEC
Confidence 4689999987 55677888899999999998887555544444444 33333344444444
No 291
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=35.27 E-value=1.1e+02 Score=29.95 Aligned_cols=58 Identities=7% Similarity=-0.016 Sum_probs=40.2
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEE
Q 000537 1279 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMI 1336 (1435)
Q Consensus 1279 ~~eKVIVFSQ------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL 1336 (1435)
...+|+||+. +=.....+.+.|+..|++|..++=....+.|+.+.+......-+.|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 5689999975 445677888899999999988876555666666655554422244444
No 292
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=33.71 E-value=2e+02 Score=39.30 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHHc
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 714 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~~ 714 (1435)
.|-+.++..-+....+... -++.-|.|.|||.|.--+|+..
T Consensus 172 LPa~~~r~~Il~~i~~~qV-------vvIsGeTGcGKTTQvpQfiLd~ 212 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQV-------VVISGETGCGKTTQVPQFILDE 212 (924)
T ss_pred CccHHHHHHHHHHHHhCce-------EEEeCCCCCCchhhhhHHHHHH
Confidence 3456777777777765433 6889999999999999999763
No 293
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.01 E-value=20 Score=40.55 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=30.1
Q ss_pred ccccCCCCCCcc----chhcccCcccchhhhhhhcccCCCCCC
Q 000537 1116 AICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCP 1154 (1435)
Q Consensus 1116 ~~C~iC~d~~e~----~vvt~CgHvfC~~Ci~e~l~~~~~~Cp 1154 (1435)
.+|++|-+...+ +++.+|||++|.+|++..+..|- .||
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~p 263 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDP 263 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-ccc
Confidence 579999887655 46899999999999998876653 344
No 294
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=32.86 E-value=65 Score=38.62 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=34.1
Q ss_pred hhhhcccccCCCCCCcc-------------chhcccCcccchhhhhhhcccCCCCCCCcccccc
Q 000537 1111 LEASLAICGICNDPPED-------------AVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1161 (1435)
Q Consensus 1111 le~~~~~C~iC~d~~e~-------------~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~ 1161 (1435)
|..+...|.||.|..-+ |--.+|||++=..|+..|+... ..||- |+..
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPI--Cr~p 343 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPI--CRRP 343 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCc--ccCc
Confidence 34566789999987322 2347899999999998887654 45774 6654
No 295
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=14 Score=42.66 Aligned_cols=27 Identities=48% Similarity=1.112 Sum_probs=24.2
Q ss_pred ccccCCCCCCccchhcccCc-ccchhhh
Q 000537 1116 AICGICNDPPEDAVVSICGH-VFCNQCI 1142 (1435)
Q Consensus 1116 ~~C~iC~d~~e~~vvt~CgH-vfC~~Ci 1142 (1435)
..|.||+|.|.+=++..||| +-|.+|=
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CG 328 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCG 328 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhc
Confidence 45999999999999999999 7788885
No 296
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=31.63 E-value=76 Score=43.08 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCcEEEEEChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhh
Q 000537 779 AAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 838 (1435)
Q Consensus 779 ~k~tLIVcP~S-LL~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~~L 838 (1435)
.+.+.+|+|.. ++.-=.+.+.+.... +.++++-..|..... ...+.+.+++|||.+..
T Consensus 973 ~~kvvyIap~kalvker~~Dw~~r~~~-~g~k~ie~tgd~~pd-~~~v~~~~~~ittpek~ 1031 (1230)
T KOG0952|consen 973 GSKVVYIAPDKALVKERSDDWSKRDEL-PGIKVIELTGDVTPD-VKAVREADIVITTPEKW 1031 (1230)
T ss_pred CccEEEEcCCchhhcccccchhhhccc-CCceeEeccCccCCC-hhheecCceEEcccccc
Confidence 35689999975 554333333444332 368888888876544 77788999999998765
No 297
>PF04641 Rtf2: Rtf2 RING-finger
Probab=31.60 E-value=30 Score=40.17 Aligned_cols=50 Identities=20% Similarity=0.453 Sum_probs=35.7
Q ss_pred cccccCCCCCCcc---c-hhcccCcccchhhhhhhcccCCCCCCCccccccccccchh
Q 000537 1115 LAICGICNDPPED---A-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF 1168 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~---~-vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l~~~~vf 1168 (1435)
..+|+++...... . .+-+|||+|+..|+.+.- .+..|| .|...+....++
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp--~c~~~f~~~DiI 166 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCP--VCGKPFTEEDII 166 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--cccccc--ccCCccccCCEE
Confidence 4679999877632 2 357899999999999984 455687 477776544433
No 298
>PF13173 AAA_14: AAA domain
Probab=30.78 E-value=44 Score=34.10 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=25.4
Q ss_pred cEEEEcCCcccCChhhHHHHHHHhcccCcEEEEecccCCCC
Q 000537 910 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 950 (1435)
Q Consensus 910 ~rVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~ 950 (1435)
.+|||||+|++.+..... +.+..-....++++||.-....
T Consensus 63 ~~i~iDEiq~~~~~~~~l-k~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDAL-KFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred cEEEEehhhhhccHHHHH-HHHHHhccCceEEEEccchHHH
Confidence 469999999997643322 2222222356999999865444
No 299
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.55 E-value=20 Score=42.91 Aligned_cols=42 Identities=40% Similarity=0.930 Sum_probs=31.3
Q ss_pred cccccCCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000537 1115 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1162 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~~vvt~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~l 1162 (1435)
...|.+|.+.+.+.+.-+|||+-| |....... .+||. |+..+
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l--~~CPv--CR~rI 346 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL--PQCPV--CRQRI 346 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHHhhC--CCCch--hHHHH
Confidence 467999999999999999999977 65544332 23874 77654
No 300
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.17 E-value=63 Score=43.04 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 668 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 668 ~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
+.||.|++...-+.+-.... ..++|=-.+|.|||+.+|+-.++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 46999999888877655533 44788888999999999877664
No 301
>CHL00181 cbbX CbbX; Provisional
Probab=29.94 E-value=1e+02 Score=36.33 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.9
Q ss_pred cEEEccCCCchHHHHHHHHH
Q 000537 693 GILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 693 GILADEMGLGKTlqaIALI~ 712 (1435)
-+|--..|.|||..|-++..
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47889999999999977754
No 302
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=29.79 E-value=1.3e+02 Score=40.57 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=31.1
Q ss_pred cEEEEEChhhHHHHH-HHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000537 781 GTLVVCPTSVLRQWA-EELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 839 (1435)
Q Consensus 781 ~tLIVcP~SLL~QW~-~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~~L~ 839 (1435)
..|.+.|--.+.|=+ .++..+. .+-.+.|--|.|... ......+-++.|.|-+.-.
T Consensus 271 ~~llilp~vsiv~Ek~~~l~~~~-~~~G~~ve~y~g~~~--p~~~~k~~sv~i~tiEkan 327 (1008)
T KOG0950|consen 271 NVLLILPYVSIVQEKISALSPFS-IDLGFPVEEYAGRFP--PEKRRKRESVAIATIEKAN 327 (1008)
T ss_pred ceeEecceeehhHHHHhhhhhhc-cccCCcchhhcccCC--CCCcccceeeeeeehHhhH
Confidence 367777865544433 3444333 345677877876432 2223345567788766543
No 303
>PF13245 AAA_19: Part of AAA domain
Probab=29.40 E-value=67 Score=30.14 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=16.9
Q ss_pred cEEEccCCCchHHHHHHHHHHc
Q 000537 693 GILADDQGLGKTISTIALILKE 714 (1435)
Q Consensus 693 GILADEMGLGKTlqaIALI~~~ 714 (1435)
.++---.|.|||.+++.++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3446778999999888888653
No 304
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=29.39 E-value=2.1e+02 Score=37.59 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=54.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1354 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1354 (1435)
.+.+++|-+.....+..+.+.++ ..|++...++|+++.++|...++...+ +++.|++.+....-..+.+.....|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEEEecHHHHhccccccccceE
Confidence 45688888888777666555544 458999999999999999999888876 6777888665444444555444443
Q ss_pred E
Q 000537 1355 L 1355 (1435)
Q Consensus 1355 I 1355 (1435)
|
T Consensus 362 V 362 (630)
T TIGR00643 362 I 362 (630)
T ss_pred E
Confidence 3
No 305
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.48 E-value=22 Score=40.82 Aligned_cols=52 Identities=33% Similarity=0.798 Sum_probs=38.2
Q ss_pred ccccCCCCCC-----ccchh-----cccCcccchhhhhhhc-ccCCCCCCCccccccccccchhh
Q 000537 1116 AICGICNDPP-----EDAVV-----SICGHVFCNQCICERL-TADDNQCPTRNCKIRLSLSSVFS 1169 (1435)
Q Consensus 1116 ~~C~iC~d~~-----e~~vv-----t~CgHvfC~~Ci~e~l-~~~~~~Cp~~~C~~~l~~~~vfs 1169 (1435)
..|.+|.... ++.++ ..|+|+|=.-||..+. .+....||. |+.++....+|+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPY--CKekVdl~rmfs 287 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPY--CKEKVDLKRMFS 287 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCch--HHHHhhHhhhcc
Confidence 4588887443 22332 5799999999999985 456778996 998887777764
No 306
>PHA03096 p28-like protein; Provisional
Probab=25.81 E-value=57 Score=38.47 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=27.1
Q ss_pred ccccCCCCCCc--------cchhcccCcccchhhhhhhcccC
Q 000537 1116 AICGICNDPPE--------DAVVSICGHVFCNQCICERLTAD 1149 (1435)
Q Consensus 1116 ~~C~iC~d~~e--------~~vvt~CgHvfC~~Ci~e~l~~~ 1149 (1435)
.+|++|++... ..+++.|.|.||..|+..+....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 78999997642 23678899999999999887653
No 307
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.69 E-value=43 Score=41.98 Aligned_cols=52 Identities=27% Similarity=0.641 Sum_probs=40.3
Q ss_pred cccccCCCCCCcc-chhcccCcccchhhhhhhcccC---C----CCCCCccccccccccc
Q 000537 1115 LAICGICNDPPED-AVVSICGHVFCNQCICERLTAD---D----NQCPTRNCKIRLSLSS 1166 (1435)
Q Consensus 1115 ~~~C~iC~d~~e~-~vvt~CgHvfC~~Ci~e~l~~~---~----~~Cp~~~C~~~l~~~~ 1166 (1435)
...|.+|.+.... .+...|+|.||..|+..+++.. + .+||...|........
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDT 129 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCce
Confidence 4679999988775 6667899999999999987651 1 3689999987766443
No 308
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=25.35 E-value=1.4e+02 Score=34.67 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 669 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 669 L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
|-+-|+.++.+ .. ++. -|.|- .|.|||.+++.-++.
T Consensus 1 l~~eQ~~~i~~-~~---~~~----lV~a~-AGSGKT~~l~~ri~~ 36 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE---GPL----LVNAG-AGSGKTTTLLERIAY 36 (315)
T ss_dssp S-HHHHHHHHS--S---SEE----EEEE--TTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-CC---CCE----EEEeC-CCCCchHHHHHHHHH
Confidence 45678888888 31 111 23444 799999999887754
No 309
>PLN03025 replication factor C subunit; Provisional
Probab=25.34 E-value=93 Score=37.11 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=34.1
Q ss_pred CccEEEEcCCcccCChhhH-HHHHHHhcccCcEEEEecccCCCChhhhhhhccccccccc
Q 000537 908 GWFRVVLDEAQSIKNHRTQ-VARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 966 (1435)
Q Consensus 908 ~W~rVILDEAH~IKN~~T~-~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf 966 (1435)
.|..|||||+|.+-..... ..+.+.......+++|+.++...-+..|-+-...++..++
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 4778999999998532211 1122222245567889888766555555555444444433
No 310
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.25 E-value=36 Score=41.29 Aligned_cols=46 Identities=26% Similarity=0.632 Sum_probs=33.2
Q ss_pred hcccccCCCCCC--c-cchhcccCcccchhhhhhhcccCC--CCCCCcccccc
Q 000537 1114 SLAICGICNDPP--E-DAVVSICGHVFCNQCICERLTADD--NQCPTRNCKIR 1161 (1435)
Q Consensus 1114 ~~~~C~iC~d~~--e-~~vvt~CgHvfC~~Ci~e~l~~~~--~~Cp~~~C~~~ 1161 (1435)
+..+|++--+.. + .|+...|||++|.+.+.....+.. .+||. |...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPY--CP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPY--CPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCC--CCcc
Confidence 456788765432 2 367889999999999998877766 67875 5443
No 311
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=24.18 E-value=11 Score=50.67 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=57.5
Q ss_pred EEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEecCCCC
Q 000537 1283 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1362 (1435)
Q Consensus 1283 VIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WN 1362 (1435)
+++|+....++.++...+. ..+.+...+...++.+|... +....+.+|.+|..+...+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~~--------~~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFLV--------DHGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhhh--------hHHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 7889999999998888541 11222222233333333331 34577789999999999999999999
Q ss_pred cChHHHHHHhhhccCCC
Q 000537 1363 PTTEDQAIDRAHRIGQT 1379 (1435)
Q Consensus 1363 Pa~e~QAIGRahRIGQt 1379 (1435)
| .+|+++|.|+++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999996
No 312
>PHA00673 acetyltransferase domain containing protein
Probab=23.61 E-value=1.2e+02 Score=32.71 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=35.6
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHhc---ccCcEEEEecccCCCChh
Q 000537 909 WFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAID 952 (1435)
Q Consensus 909 W~rVILDEAH~IKN~~T~~skAl~~L---~A~~RwlLTGTPIqN~l~ 952 (1435)
.+-|.+++.|+=++-.++..+.+... +.-++|-+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 45699999999888887777766544 556899999999999865
No 313
>PRK11054 helD DNA helicase IV; Provisional
Probab=23.24 E-value=1.4e+02 Score=39.75 Aligned_cols=38 Identities=32% Similarity=0.099 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCccEEEccCCCchHHHHHHHHHH
Q 000537 667 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 713 (1435)
Q Consensus 667 ~~L~phQk~gl~wMl~rE~~~~~~rGGILADEMGLGKTlqaIALI~~ 713 (1435)
.+|-+-|+++|..-. .+ -.|+|- .|.|||.++++-++.
T Consensus 195 ~~L~~~Q~~av~~~~----~~----~lV~ag-aGSGKT~vl~~r~ay 232 (684)
T PRK11054 195 SPLNPSQARAVVNGE----DS----LLVLAG-AGSGKTSVLVARAGW 232 (684)
T ss_pred CCCCHHHHHHHhCCC----CC----eEEEEe-CCCCHHHHHHHHHHH
Confidence 368999999996431 11 134454 799999999888765
No 314
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=23.21 E-value=4.2e+02 Score=34.97 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.7
Q ss_pred ccEEEEcCCcccCC
Q 000537 909 WFRVVLDEAQSIKN 922 (1435)
Q Consensus 909 W~rVILDEAH~IKN 922 (1435)
=..|||||||++-+
T Consensus 349 dsIvIiDEAHNlid 362 (821)
T KOG1133|consen 349 DSIVIIDEAHNLID 362 (821)
T ss_pred ccEEEEechhHHHH
Confidence 35799999999866
No 315
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=22.94 E-value=60 Score=28.09 Aligned_cols=42 Identities=24% Similarity=0.796 Sum_probs=20.9
Q ss_pred ccCCCCCCccc--hh--cccCcccchhhhhhhcccCCCCCCCcccccc
Q 000537 1118 CGICNDPPEDA--VV--SICGHVFCNQCICERLTADDNQCPTRNCKIR 1161 (1435)
Q Consensus 1118 C~iC~d~~e~~--vv--t~CgHvfC~~Ci~e~l~~~~~~Cp~~~C~~~ 1161 (1435)
|++|.+..... -+ =.|++-+|..|....+...+..||. |+..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPg--Cr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPG--CREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TT--T--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCC--CCCC
Confidence 56777655221 22 2589999999999998877888984 7654
No 316
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=22.86 E-value=4e+02 Score=37.05 Aligned_cols=49 Identities=27% Similarity=0.220 Sum_probs=32.2
Q ss_pred ccEEEEcCCcccCChhhHHHHHHHhc-ccCcEEEEecccCCCChhhhhhhcc
Q 000537 909 WFRVVLDEAQSIKNHRTQVARACWGL-RAKRRWCLSGTPIQNAIDDLYSYFR 959 (1435)
Q Consensus 909 W~rVILDEAH~IKN~~T~~skAl~~L-~A~~RwlLTGTPIqN~l~DLyslL~ 959 (1435)
-++||||||-++... ...+.+... ....+++|.|=|-|-..-+--..|+
T Consensus 434 ~~vlIVDEASMv~~~--~m~~LL~~a~~~garvVLVGD~~QLpsV~aG~~f~ 483 (988)
T PRK13889 434 RDVLVIDEAGMVGTR--QLERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFR 483 (988)
T ss_pred CcEEEEECcccCCHH--HHHHHHHhhhhCCCEEEEECCHHHcCCCCCCchHH
Confidence 367999999999643 333444333 5678999999887765444333333
No 317
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=22.84 E-value=2.9e+02 Score=34.91 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.2
Q ss_pred CccEEEccCCCchHHHHHHHH
Q 000537 691 SGGILADDQGLGKTISTIALI 711 (1435)
Q Consensus 691 rGGILADEMGLGKTlqaIALI 711 (1435)
.+-+|--+.|+|||-.+-|+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~ 162 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAK 162 (450)
T ss_pred CceEEECCCCCcHHHHHHHHH
Confidence 446789999999997765554
No 318
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.80 E-value=2e+02 Score=27.05 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=29.6
Q ss_pred EEEEEChhh-H-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEech
Q 000537 782 TLVVCPTSV-L-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 836 (1435)
Q Consensus 782 tLIVcP~SL-L-~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~ 836 (1435)
+|||||... . .--+..++++++..+ +...+-+..- ....+.++|++|||-.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~-i~~~~~~~~~---~~~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELG-IEAEVEHTDL---GSAKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCC-CcEEEEEecc---cccCCCCCCEEEEchh
Confidence 799999974 3 334457777776333 2222222111 1122568999999975
No 319
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=22.56 E-value=2.8e+02 Score=37.97 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=17.7
Q ss_pred CccEEEccCCCchHHHHHHHHH
Q 000537 691 SGGILADDQGLGKTISTIALIL 712 (1435)
Q Consensus 691 rGGILADEMGLGKTlqaIALI~ 712 (1435)
..-||--+.|.|||..+=+|+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHH
Confidence 3579999999999998866553
No 320
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=22.54 E-value=1.6e+02 Score=28.03 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=32.5
Q ss_pred cEEEEEChhh-H-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechh
Q 000537 781 GTLVVCPTSV-L-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 837 (1435)
Q Consensus 781 ~tLIVcP~SL-L-~QW~~EI~k~~~~~~~L~VlvyhG~~r~k~~~~L~~~DVVITTY~~ 837 (1435)
.+|+|||... . ..-+..++++++.. .+.+.+-+.....-.. ...++|+||+|-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 4799999975 3 34677788887632 3333332222111111 35689999999765
No 321
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=21.99 E-value=66 Score=40.14 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCcccccccCcccccCccEEEEcCCcccCChhhHHHHHHHhc--------ccCcEEEEecccCCCChhhhhh
Q 000537 892 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGL--------RAKRRWCLSGTPIQNAIDDLYS 956 (1435)
Q Consensus 892 ~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skAl~~L--------~A~~RwlLTGTPIqN~l~DLys 956 (1435)
.|+.+.+...+.-.--.|..||+|||| .+|..+..+..| .--+.+++|+|-...++...|+
T Consensus 143 tDgmLlrEams~p~l~~y~viiLDeah----ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~ 211 (699)
T KOG0925|consen 143 TDGMLLREAMSDPLLGRYGVIILDEAH----ERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFG 211 (699)
T ss_pred cchHHHHHHhhCcccccccEEEechhh----hhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhC
No 322
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=21.91 E-value=3.2e+02 Score=37.94 Aligned_cols=48 Identities=10% Similarity=0.033 Sum_probs=34.2
Q ss_pred CccEEEeeccccccccCccccCEEEEecCCCCcChHHHHHHhhhccCCCCc
Q 000537 1331 EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1381 (1435)
Q Consensus 1331 ~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNPa~e~QAIGRahRIGQtr~ 1381 (1435)
...+++++|.....|+++-. +.+ +.||. .-....|+.||+.|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~df-d~~-~~~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHDY-DWA-IADPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEecccC-Cee-eeccC-cHHHHHHHhhcccccccCCC
Confidence 35577779999999999863 333 33332 23577899999999998554
No 323
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=20.60 E-value=1e+02 Score=25.02 Aligned_cols=19 Identities=42% Similarity=0.822 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 000537 24 MFLLYSLLIMIYIMSYSLQ 42 (1435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~ 42 (1435)
.|||+..+||..|.-++|.
T Consensus 15 ~~llflv~imliif~f~le 33 (43)
T PF11395_consen 15 SFLLFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3778888899888877763
No 324
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=20.53 E-value=44 Score=41.18 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=27.0
Q ss_pred cCcEEEEecccCCCChhhhhhhccccccccc
Q 000537 936 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 966 (1435)
Q Consensus 936 A~~RwlLTGTPIqN~l~DLyslL~FLrp~pf 966 (1435)
.++..++||||+.|.+.+.+++-++|.++-+
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 4566899999999999999999999987654
No 325
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.43 E-value=7.4e+02 Score=31.25 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=58.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeecccccccc-------CccccC
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL-------NMVAAC 1352 (1435)
Q Consensus 1280 ~eKVIVFSQ~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GL-------NLq~An 1352 (1435)
+..+||.+.....+.-....|...|++...+.|..+..++..++..... +.+++++++........ .+....
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~-~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD-GKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 4578999999888777777888899999999999999988888888855 77889988876543322 334455
Q ss_pred EEEEec
Q 000537 1353 HVLLLD 1358 (1435)
Q Consensus 1353 ~VI~lD 1358 (1435)
.||+=|
T Consensus 130 ~iViDE 135 (470)
T TIGR00614 130 LIAVDE 135 (470)
T ss_pred EEEEeC
Confidence 555533
No 326
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.08 E-value=3.8e+02 Score=35.63 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhc-C-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccc
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS-S-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1341 (1435)
Q Consensus 1279 ~~eKVIVFSQ~t~~LdlLe~~L~~~-g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkA 1341 (1435)
.|+.+||...-......+...|+.. | ..+..++.+++..+|.+.-.+... ++.+|+|.+ ++
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~IViGt-RS 249 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARVVVGT-RS 249 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcEEEEc-ce
Confidence 5778999888888888888888754 4 678999999999999999888876 788888754 44
Done!