Query 000537
Match_columns 1435
No_of_seqs 299 out of 2168
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 17:48:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000537.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_309-313//hhsearch_pdb/000537hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 712.4 19.1 608 522-1434 96-731 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 678.8 32.6 495 664-1435 51-570 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 629.5 36.1 463 660-1435 30-495 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 454.0 30.1 425 665-1409 150-633 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 372.1 30.6 465 666-1409 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 348.8 22.8 255 997-1435 11-266 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 339.6 19.8 379 666-1409 91-472 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 319.9 30.4 129 1279-1413 630-770 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 311.5 27.8 129 1279-1413 630-770 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 306.1 24.7 129 1279-1413 389-529 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=712.42 Aligned_cols=608 Identities=23% Similarity=0.363 Sum_probs=438.4
Q ss_pred CCCCCHHCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC------CCCCHHHHHHCCCCC
Q ss_conf 2343020000001232112233---5779432135888776577999983898015896------675213531011236
Q 000537 522 ELDGVKEDMEAEIKTRSMASHL---LKLSPESIQSNSSDCKSHVDDEPDICILEDISQP------ARSNQSLVLGKTLSM 592 (1435)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~l---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~ 592 (1435)
.+.+.++..++.++.+..+.+. +..++|+++...++.+...+.-+++..+|+|=.. .......++.||-++
T Consensus 96 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L 175 (800)
T 3mwy_W 96 QVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRL 175 (800)
T ss_dssp SCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTS
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 34157999999998632778875189998788888756665420001113534689864113467898865999981578
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 64446656423699841223666889999999887778899987527999999986105899978799998766777288
Q 000537 593 NRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRH 672 (1435)
Q Consensus 593 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~l~~l~~p~~e~~~P~g~l~v~L~ph 672 (1435)
++..|.|............+...|.........+.........+. .+ ... ...|+.....+|+||
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~------------~~--~~~-~~~p~~~~~~~Lr~y 240 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRP------------RF--EKL-SVQPPFIKGGELRDF 240 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCC------------CC--CCC-SSCCTTCCSSCCCTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC------------CC--CCC-CCCCCCCCCCCCCHH
T ss_conf 734264336344333319999999976313447751010345577------------64--002-569986579975899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999981106877776399814898548999999997099998876402445431145433444323564311234
Q 000537 673 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQE 752 (1435)
Q Consensus 673 Qk~al~wMl~kE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~k~~ 752 (1435)
|++|+.||+...... +||||||+||||||+++|+++......
T Consensus 241 Q~egv~~l~~~~~~~---~~~ILademGlGKT~~ai~~i~~l~~~----------------------------------- 282 (800)
T 3mwy_W 241 QLTGINWMAFLWSKG---DNGILADEMGLGKTVQTVAFISWLIFA----------------------------------- 282 (800)
T ss_dssp HHHHHHHHHHHHTTT---CCEEECCCTTSSTTHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHHHH-----------------------------------
T ss_conf 999999999985138---998998278753299999999999986-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-----------
Q ss_conf 543333589998753002321028999838999770329999999998714899938999948987888-----------
Q 000537 753 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----------- 821 (1435)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~kd----------- 821 (1435)
....+++|||||.+++.||.+|+.+|++ .+.+.+|+|..+.+.
T Consensus 283 -----------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~ 336 (800)
T 3mwy_W 283 -----------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSRDTIREYEFYTNP 336 (800)
T ss_dssp -----------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHHHHHHHHHSCSCC
T ss_pred -----------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf -----------------------0779988999880389999999999779---96499982777778898887762263
Q ss_pred ---CCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---10016898999710124012688999981358987531179999753467666889999864366678999973100
Q 000537 822 ---PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 898 (1435)
Q Consensus 822 ---~~~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~l~~~~~~~~kkrK~~~~~~rk~~~~kk~~~~~~~~ 898 (1435)
......++||||||+++.++.
T Consensus 337 ~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------------------- 360 (800)
T 3mwy_W 337 RAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------------------- 360 (800)
T ss_dssp -----CCCCCSEEEECTTHHHHTH--------------------------------------------------------
T ss_pred CCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------------------
T ss_conf 001344566788990699998649--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 01476545480099995874347733399999981225829999655688993566411001444565425789866336
Q 000537 899 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKV 978 (1435)
Q Consensus 899 ~~~~pL~~i~W~RVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FL~~~pf~~~~~F~~~i~~ 978 (1435)
..|..+.|.+||+||||++||..++.++++..+++.+||+|||||++|++.|||++++||.|+.|.....|.....
T Consensus 361 ---~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~- 436 (800)
T 3mwy_W 361 ---AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ- 436 (800)
T ss_dssp ---HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-
T ss_pred ---HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-
T ss_conf ---9983377325641344441471019999999752243897227857799999999999858663674344232223-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 68889623289999998574300020210489886579993799998059999999999999999999999997064510
Q 000537 979 PISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ 1058 (1435)
Q Consensus 979 pi~k~~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~lY~~L~~~sr~~~~~~~~~g~~~~ 1058 (1435)
..........|+.++.++|+||+|.++.. .||++.+.++.++|++.|+++|..+.......+.... ..
T Consensus 437 --~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-----~~ 504 (800)
T 3mwy_W 437 --DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-----KG 504 (800)
T ss_dssp --TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-------------
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC-----CC
T ss_conf --14689999999999757775320876643-----1688279999707999999999999999999986103-----54
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 19999999999999715810002457414666479998406089999999986530112467899986211013585111
Q 000537 1059 NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 1138 (1435)
Q Consensus 1059 ~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgHvfC 1138 (1435)
...+++..+++||++|+||.++....... ......
T Consensus 505 ~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~--------~~~~~~------------------------------------- 539 (800)
T 3mwy_W 505 GHFSLLNIMNELKKASNHPYLFDNAEERV--------LQKFGD------------------------------------- 539 (800)
T ss_dssp --CTHHHHHHHHHHHHHCGGGSSSHHHHH--------CCCC---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCHHHHCCHHHHH--------HHHCCC-------------------------------------
T ss_conf 54469999999998735865423557899--------886156-------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 23453310148998888532233442210235310233235899999888888742235886678654636899999999
Q 000537 1139 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVL 1218 (1435)
Q Consensus 1139 ~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~s~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL 1218 (1435)
. ... ... ........++|+..+.++|
T Consensus 540 -----------~----------~~~----------------------------~~~-----~~~~l~~~s~K~~~L~~lL 565 (800)
T 3mwy_W 540 -----------G----------KMT----------------------------REN-----VLRGLIMSSGKMVLLDQLL 565 (800)
T ss_dssp -----------------------CC----------------------------SHH-----HHHHHHHTCHHHHHHHHHH
T ss_pred -----------C----------CCC----------------------------HHH-----HHHHHHHCCHHHHHHHHHH
T ss_conf -----------6----------555----------------------------778-----8887664276999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 96027899865554322344788668999998888986434202568988320221102699739999155889999999
Q 000537 1219 QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEA 1298 (1435)
Q Consensus 1219 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSq~t~~LdlLe~ 1298 (1435)
..+. ..++|+||||||+.++++|+.
T Consensus 566 ~~~~-------------------------------------------------------~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 566 TRLK-------------------------------------------------------KDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp HHHT-------------------------------------------------------TTTCCEEEEESCHHHHHHHHH
T ss_pred HHHH-------------------------------------------------------HCCCEEEEEECHHHHHHHHHH
T ss_conf 9975-------------------------------------------------------279818999635999999999
Q ss_pred HHHHCCCCEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 9981699388238998999999999987149-995389961342223568555698999649999492889989553049
Q 000537 1299 SLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1377 (1435)
Q Consensus 1299 ~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLLlSlkAGg~GLNLt~An~VIilDp~WNPa~e~QAigRvhRIG 1377 (1435)
+|...|+++.+++|+++..+|++++++|++. ....|+|+|+++||+||||+.|++||++|++|||..+.||+||+||+|
T Consensus 591 ~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 591 YLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670 (800)
T ss_dssp HHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSS
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99867997899969999999999999960899982599974544567877601636899468788116899999988558
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHC
Q ss_conf 989499999995999999999999999999998818997676----344779999997432
Q 000537 1378 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG----QQTRLTVDDLNYLFM 1434 (1435)
Q Consensus 1378 Qkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~s~lg~d~~~~----~~~~lt~~DL~~LF~ 1434 (1435)
|+++|+||+|++++|+|++|++++.+|..+..++++.....+ ....++.+||..|+.
T Consensus 671 Q~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 671 QKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp CCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9863799998619989999999999988899999703756653211234789999999997
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=678.76 Aligned_cols=495 Identities=26% Similarity=0.384 Sum_probs=389.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 766777288999999999811068--777763998148985489999999970999988764024454311454334443
Q 000537 664 VLAVPLLRHQRIALSWMVQKETSS--LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 741 (1435)
Q Consensus 664 ~l~v~L~phQk~al~wMl~kE~~~--~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~~~~~~~~~~d~~~~~~ 741 (1435)
.+...|+|||++|+.||+....+. ...+||||||+||||||+++|++|......
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~------------------------ 106 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ------------------------ 106 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHH------------------------
T ss_conf 64003519999999999984233544588875961078742999999999999974------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 23564311234543333589998753002321028999838999770329999999998714899938999948987888
Q 000537 742 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 821 (1435)
Q Consensus 742 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~kd 821 (1435)
.+ ......+++|||||.+++.||.+|+.+|++. .+.++.++|..+...
T Consensus 107 ----------~~--------------------~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~ 154 (644)
T 1z3i_X 107 ----------SP--------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEI 154 (644)
T ss_dssp ----------CT--------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCHHHH
T ss_pred ----------CC--------------------CCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHH
T ss_conf ----------86--------------------6567778579996589988799999997588--725999808988999
Q ss_pred C----------CCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1----------001689899971012401268899998135898753117999975346766688999986436667899
Q 000537 822 P----------CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 891 (1435)
Q Consensus 822 ~----------~~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~l~~~~~~~~kkrK~~~~~~rk~~~~kk~ 891 (1435)
. .....++|+|+||+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------------------------------------------------- 185 (644)
T 1z3i_X 155 DSKLVNFISQQGMRIPTPILIISYETFRLHA------------------------------------------------- 185 (644)
T ss_dssp HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH-------------------------------------------------
T ss_conf 9999999873377778757996389987657-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 99731000147654548009999587434773339999998122582999965568899356641100144456542578
Q 000537 892 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 971 (1435)
Q Consensus 892 ~~~~~~~~~~~pL~~i~W~RVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FL~~~pf~~~~~ 971 (1435)
..|....|++||+||||+|||..++.++++..+++.+||+|||||+||++.|||++++||.|++|+....
T Consensus 186 ----------~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~ 255 (644)
T 1z3i_X 186 ----------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255 (644)
T ss_dssp ----------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHH
T ss_pred ----------HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf ----------8750488657998786224780459999998555673799846734588999999998618876899999
Q ss_pred HHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 9866336688896------------2328999999857430002021048988657999379999805999999999999
Q 000537 972 FCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1039 (1435)
Q Consensus 972 F~~~i~~pi~k~~------------~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~lY~~L 1039 (1435)
|..+|..|+.++. ......|+.++.++|+||+|.++.. .||++.+.++.|+|++.|+++|+.+
T Consensus 256 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 256 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp HHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 99863261541677677888999999999999999889998710876764-----2798369999837998999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999970645101999999999999971581000245741466647999840608999999998653011246
Q 000537 1040 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICG 1119 (1435)
Q Consensus 1040 ~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~ 1119 (1435)
....... ..........+++..+++||++|+||.++.... ... .
T Consensus 331 ~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~--------------------------~~~-~---- 374 (644)
T 1z3i_X 331 LKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKC--------------------------LTG-E---- 374 (644)
T ss_dssp HHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHH--------------------------HHT-C----
T ss_pred HHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH--------------------------HCC-C----
T ss_conf 9989999-----987627621459999999999957999888887--------------------------415-4----
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999862110135851112345331014899888853223344221023531023323589999988888874223588
Q 000537 1120 ICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAP 1199 (1435)
Q Consensus 1120 iC~d~~e~~vit~CgHvfC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~s~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~ 1199 (1435)
+..+. ++ . ..+..+...
T Consensus 375 ---~~~~~-------------~~-----------------------------------~------~~~~~~~~~------ 391 (644)
T 1z3i_X 375 ---EGFDG-------------AL-----------------------------------D------LFPQNYSTK------ 391 (644)
T ss_dssp ---TTCTT-------------GG-----------------------------------G------TSCSSCCSS------
T ss_pred ---CHHHH-------------HH-----------------------------------H------HCCCCCCCC------
T ss_conf ---00355-------------77-----------------------------------6------454211100------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 66786546368999999999602789986555432234478866899999888898643420256898832022110269
Q 000537 1200 SCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG 1279 (1435)
Q Consensus 1200 ~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~ 1279 (1435)
......+.|+..+..++..+.. ..
T Consensus 392 --~~~~~~s~K~~~l~~ll~~~~~------------------------------------------------------~~ 415 (644)
T 1z3i_X 392 --AVEPQLSGKMLVLDYILAMTRT------------------------------------------------------TT 415 (644)
T ss_dssp --SCCGGGSHHHHHHHHHHHHHHH------------------------------------------------------HC
T ss_pred --CCCCCCCHHHHHHHHHHHHHHH------------------------------------------------------CC
T ss_conf --0570117489999999999864------------------------------------------------------69
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 9739999155889999999998169938823899899999999998714999-538996134222356855569899964
Q 000537 1280 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLD 1358 (1435)
Q Consensus 1280 ~eKVIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~-v~VLLlSlkAGg~GLNLt~An~VIilD 1358 (1435)
++|+||||+|+.++++|+..|...|+.+.+++|+++.++|++++++|++++. ..|+|+|+++||+||||+.|++||++|
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 98799998059999999999997799789983999999999999996399999679998445566784652389899979
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99994928899895530499894999999959999999999999999999988189976763447799999974329
Q 000537 1359 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1435 (1435)
Q Consensus 1359 p~WNPa~e~QAigRvhRIGQkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~s~lg~d~~~~~~~~lt~~DL~~LF~~ 1435 (1435)
+||||+.+.||+||+||+||+++|+||+|++++|+||+|+++|..|+.+++.+++++. .....++.+||+.||.+
T Consensus 496 ~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~--~~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 496 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ--DVERHFSLGELRELFSL 570 (644)
T ss_dssp CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSS--SCCCSSCHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHCCCCHHHHHHHHCC
T ss_conf 9998137999988403228987269999887988999999999999999999856860--54337899999998678
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=629.50 Aligned_cols=463 Identities=33% Similarity=0.520 Sum_probs=397.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 99987667772889999999998110687777639981489854899999999709999887640244543114543344
Q 000537 660 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 739 (1435)
Q Consensus 660 ~P~g~l~v~L~phQk~al~wMl~kE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~~~~~~~~~~d~~~~ 739 (1435)
+|.+ +...|+|||++|+.||......+ +||||||+||+|||+++++++.....
T Consensus 30 ~p~~-~~~~L~~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~ai~~i~~~~~----------------------- 82 (500)
T 1z63_A 30 EPYN-IKANLRPYQIKGFSWMRFMNKLG---FGICLADDMGLGKTLQTIAVFSDAKK----------------------- 82 (500)
T ss_dssp CCCS-CSSCCCHHHHHHHHHHHHHHHTT---CCEEECCCTTSCHHHHHHHHHHHHHH-----------------------
T ss_pred CCHH-HHCCCHHHHHHHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHHHHH-----------------------
T ss_conf 9833-20033699999999999974179---98899808997389999999998875-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 43235643112345433335899987530023210289998389997703299999999987148999389999489878
Q 000537 740 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 819 (1435)
Q Consensus 740 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~ 819 (1435)
..+.+++|||||.+++.||.+|+++|++ .+++.+++|....
T Consensus 83 ------------------------------------~~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~ 123 (500)
T 1z63_A 83 ------------------------------------ENELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK 123 (500)
T ss_dssp ------------------------------------TTCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS
T ss_pred ------------------------------------CCCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH
T ss_conf ------------------------------------5899978999038999999999999779---9559997267021
Q ss_pred CCCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88100168989997101240126889999813589875311799997534676668899998643666789999731000
Q 000537 820 KDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDI 899 (1435)
Q Consensus 820 kd~~~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~l~~~~~~~~kkrK~~~~~~rk~~~~kk~~~~~~~~~ 899 (1435)
..+..++|||+||+++..+.
T Consensus 124 ---~~~~~~~ivi~t~~~l~~~~--------------------------------------------------------- 143 (500)
T 1z63_A 124 ---IKLEDYDIILTTYAVLLRDT--------------------------------------------------------- 143 (500)
T ss_dssp ---CCGGGSSEEEEEHHHHTTCH---------------------------------------------------------
T ss_pred ---CCCCCCCEEEEEHHHHHCCC---------------------------------------------------------
T ss_conf ---00357768996379972630---------------------------------------------------------
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 14765454800999958743477333999999812258299996556889935664110014445654257898663366
Q 000537 900 VAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVP 979 (1435)
Q Consensus 900 ~~~pL~~i~W~RVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FL~~~pf~~~~~F~~~i~~p 979 (1435)
.+....|++||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||.|++|..+..|...|..|
T Consensus 144 ---~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~ 220 (500)
T 1z63_A 144 ---RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATP 220 (500)
T ss_dssp ---HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHH
T ss_pred ---HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
T ss_conf ---21178728799808410178768999999960047189974677779999999999985877579989999985251
Q ss_pred CCCCCHHHHHHHHHHHHHHHHEECCCC--CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 888962328999999857430002021--048988657999379999805999999999999999999999999706451
Q 000537 980 ISKNPVKGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVK 1057 (1435)
Q Consensus 980 i~k~~~~~~~~L~~lL~~imLRRtK~d--v~dG~pii~LPpk~e~vv~v~lS~eEr~lY~~L~~~sr~~~~~~~~~g~~~ 1057 (1435)
+..+.......|+.++.++++||+|.+ +.. .||++.+..+.+++++.|+++|+.+.......+ ......
T Consensus 221 ~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~-----~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~ 291 (500)
T 1z63_A 221 IKKGDNMAKEELKAIISPFILRRTKYDKAIIN-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGI 291 (500)
T ss_dssp HHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT-----TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTH
T ss_pred CCCCCHHHHHHHHHHHHHHEEEECCCCCCHHH-----CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHCC
T ss_conf 11466889999999976674550255424112-----299975899981899999999999999999999----864232
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 01999999999999971581000245741466647999840608999999998653011246789998621101358511
Q 000537 1058 QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVF 1137 (1435)
Q Consensus 1058 ~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgHvf 1137 (1435)
.....++..+++||++|+||.++....
T Consensus 292 ~~~~~~~~~l~~lr~~~~~p~l~~~~~----------------------------------------------------- 318 (500)
T 1z63_A 292 KRKGMILSTLLKLKQIVDHPALLKGGE----------------------------------------------------- 318 (500)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSC-----------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHCCCC-----------------------------------------------------
T ss_conf 106799999999998817998843852-----------------------------------------------------
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 12345331014899888853223344221023531023323589999988888874223588667865463689999999
Q 000537 1138 CNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEV 1217 (1435)
Q Consensus 1138 C~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~s~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allel 1217 (1435)
.....++|+..+.++
T Consensus 319 -----------------------------------------------------------------~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 319 -----------------------------------------------------------------QSVRRSGKMIRTMEI 333 (500)
T ss_dssp -----------------------------------------------------------------CCSTTCHHHHHHHHH
T ss_pred -----------------------------------------------------------------CHHHCCHHHHHHHHH
T ss_conf -----------------------------------------------------------------011115529999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 99602789986555432234478866899999888898643420256898832022110269973999915588999999
Q 000537 1218 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLE 1297 (1435)
Q Consensus 1218 L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSq~t~~LdlLe 1297 (1435)
+..+.. .++|+|||++++.+++.|+
T Consensus 334 l~~~~~-------------------------------------------------------~~~k~lvF~~~~~~~~~l~ 358 (500)
T 1z63_A 334 IEEALD-------------------------------------------------------EGDKIAIFTQFVDMGKIIR 358 (500)
T ss_dssp HHHHHT-------------------------------------------------------TTCCEEEECSCHHHHHHHH
T ss_pred HHHHHC-------------------------------------------------------CCCCEEEEEEHHHHHHHHH
T ss_conf 999872-------------------------------------------------------6886899972188999999
Q ss_pred HHHHHC-CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCC
Q ss_conf 999816-9938823899899999999998714999538996134222356855569899964999949288998955304
Q 000537 1298 ASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1376 (1435)
Q Consensus 1298 ~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VIilDp~WNPa~e~QAigRvhRI 1376 (1435)
..|... |+.+.+++|+++..+|++++++|+++++++|+|++++++++|+||+.|++||++|++|||..+.||+||++|+
T Consensus 359 ~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 359 NIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp HHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTT
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99988538876999799999999999999608999877999533355777445588899958998954589999988873
Q ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 99894999999959999999999999999999988189976763447799999974329
Q 000537 1377 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1435 (1435)
Q Consensus 1377 GQkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~s~lg~d~~~~~~~~lt~~DL~~LF~~ 1435 (1435)
||+++|+||+|++++|+|++|++++++|+.+++.+++.+. .....++.+||+.||.+
T Consensus 439 Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 439 GQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp TTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTT--GGGGSSCHHHHHHHHSC
T ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHCCCCHHHHHHHHCC
T ss_conf 8987069999774898999999999999999999860685--02115999999999646
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=453.99 Aligned_cols=425 Identities=18% Similarity=0.263 Sum_probs=316.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 66777288999999999811068777763998148985489999999970999988764024454311454334443235
Q 000537 665 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 744 (1435)
Q Consensus 665 l~v~L~phQk~al~wMl~kE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 744 (1435)
..+.|+|||+.++.|++... ..|+||||+||+|||+++++++.....
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~---------------------------- 196 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLL---------------------------- 196 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHH----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHH----------------------------
T ss_conf 89997099999999999705-----898898789997599999999999998----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC----C
Q ss_conf 643112345433335899987530023210289998389997703299999999987148999389999489878----8
Q 000537 745 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 820 (1435)
Q Consensus 745 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~----k 820 (1435)
..+.+++|||||.+|+.||..|+.++++ +.+.+++|.... .
T Consensus 197 -------------------------------~g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~ 241 (968)
T 3dmq_A 197 -------------------------------SGAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHD 241 (968)
T ss_dssp -------------------------------TSSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHT
T ss_pred -------------------------------HCCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHH
T ss_conf -------------------------------1899829999578889999999999869----98799806205554320
Q ss_pred CCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 81001689899971012401268899998135898753117999975346766688999986436667899997310001
Q 000537 821 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 900 (1435)
Q Consensus 821 d~~~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~l~~~~~~~~kkrK~~~~~~rk~~~~kk~~~~~~~~~~ 900 (1435)
....+..++|||+||+++.+....
T Consensus 242 ~~~~~~~~dIvI~T~~~L~~~~~~-------------------------------------------------------- 265 (968)
T 3dmq_A 242 AYNPFDTEQLVICSLDFARRSKQR-------------------------------------------------------- 265 (968)
T ss_dssp TCSSSTTCSEEEECHHHHHTSTTT--------------------------------------------------------
T ss_pred CCCCCCCCCEEEECHHHHHHCHHH--------------------------------------------------------
T ss_conf 036445689899768998648788--------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHH---HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 47654548009999587434773339---99999812--25829999655688993566411001444565425789866
Q 000537 901 AGPLAKVGWFRVVLDEAQSIKNHRTQ---VARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 975 (1435)
Q Consensus 901 ~~pL~~i~W~RVILDEAH~IKN~~T~---~skAl~~L--~A~~RwlLTGTPIqN~l~DLyslL~FL~~~pf~~~~~F~~~ 975 (1435)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++||.+..|.++..|...
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~ 345 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEE 345 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHH
T ss_pred HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 88764158778974446762588875429999999986257858999768766987999999982593011898999999
Q ss_pred HCCCC----------CC---------------------------------CCHHHHHHHHHHH-----HHHHHEECCCCC
Q ss_conf 33668----------88---------------------------------9623289999998-----574300020210
Q 000537 976 IKVPI----------SK---------------------------------NPVKGYKKLQAVL-----KTIMLRRTKGTL 1007 (1435)
Q Consensus 976 i~~pi----------~k---------------------------------~~~~~~~~L~~lL-----~~imLRRtK~dv 1007 (1435)
+.... .. ........+..++ ..+++|+++..+
T Consensus 346 ~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i 425 (968)
T 3dmq_A 346 QKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425 (968)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98578899999987426789988999999884203367887503622233379999999999986173326563226554
Q ss_pred CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 48988657999379999805999999999999999999999999706451019999999999999715810002457414
Q 000537 1008 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1087 (1435)
Q Consensus 1008 ~dG~pii~LPpk~e~vv~v~lS~eEr~lY~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s 1087 (1435)
. .+|++....+.+++++.++..|...... ........ .. ..+.+|..+
T Consensus 426 ~------~~p~r~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~---------~~-~~~l~pe~~------- 473 (968)
T 3dmq_A 426 K------GFPKRELHTIKLPLPTQYQTAIKVSGIM---------GARKSAED---------RA-RDMLYPERI------- 473 (968)
T ss_dssp C------CCCCCCCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGG---------GT-HHHHCSGGG-------
T ss_pred C------CCCHHHEEEEECCCCHHHHHHHHHHHHH---------HHHHHHHH---------HH-HHHCCHHHH-------
T ss_conf 5------5671115752368999999999987543---------02126677---------77-641085989-------
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 66647999840608999999998653011246789998621101358511123453310148998888532233442210
Q 000537 1088 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1167 (1435)
Q Consensus 1088 ~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgHvfC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v 1167 (1435)
T Consensus 474 -------------------------------------------------------------------------------- 473 (968)
T 3dmq_A 474 -------------------------------------------------------------------------------- 473 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23531023323589999988888874223588667865463689999999996027899865554322344788668999
Q 000537 1168 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 1247 (1435)
Q Consensus 1168 ~s~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 1247 (1435)
+. .+. . ........+.|+.++.++++..
T Consensus 474 ~~------~l~-------------~-------~~~~~~~~~~K~~~L~~ll~~~-------------------------- 501 (968)
T 3dmq_A 474 YQ------EFE-------------G-------DNATWWNFDPRVEWLMGYLTSH-------------------------- 501 (968)
T ss_dssp TT------TTT-------------S-------SSCCTTTTSHHHHHHHHHHHHT--------------------------
T ss_pred HH------HHH-------------H-------HHHCCCCCCHHHHHHHHHHHHC--------------------------
T ss_conf 98------764-------------3-------3313568567999999999837--------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9988889864342025689883202211026997399991558899999999981-699388238998999999999987
Q 000537 1248 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDF 1326 (1435)
Q Consensus 1248 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~F 1326 (1435)
.+.|+|||+++..+++.|+..|.. .|+++..++|+|+..+|++++++|
T Consensus 502 -------------------------------~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 502 -------------------------------RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp -------------------------------SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred -------------------------------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf -------------------------------9997899969599999999999987498389984999999999999997
Q ss_pred HCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 1499-953899613422235685556989996499994928899895530499894999999959999999999999999
Q 000537 1327 NTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1405 (1435)
Q Consensus 1327 n~d~-~v~VLLlSlkAGg~GLNLt~An~VIilDp~WNPa~e~QAigRvhRIGQkr~V~VyrLi~kdTIEErIl~lq~kK~ 1405 (1435)
++.. .+.||| ++.++++|+|++.|++||++|++|||..+.|++||++|+||++.|+||+++.++|+|++|++.+.+|.
T Consensus 551 ~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 551 AEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp HSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred HCCCCCCCEEE-ECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 47997630898-53343168885567679995699987899987011430799850899980577719999999998678
Q ss_pred HHHH
Q ss_conf 9999
Q 000537 1406 EMVA 1409 (1435)
Q Consensus 1406 ~l~~ 1409 (1435)
.++.
T Consensus 630 ~~~~ 633 (968)
T 3dmq_A 630 DAFE 633 (968)
T ss_dssp CCSS
T ss_pred CCEE
T ss_conf 7635
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=372.06 Aligned_cols=465 Identities=15% Similarity=0.173 Sum_probs=280.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67772889999999998110687777639981489854899999999709999887640244543114543344432356
Q 000537 666 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 745 (1435)
Q Consensus 666 ~v~L~phQk~al~wMl~kE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 745 (1435)
..+|+|||++++.|+++. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-C
Q ss_conf 4311234543333589998753002321028999838999770-3299999999987148999389999489878881-0
Q 000537 746 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-C 823 (1435)
Q Consensus 746 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~kd~-~ 823 (1435)
.+.+.+|||||. +|+.||.+|+.+++.. ...++..++|....... .
T Consensus 50 -------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~ 97 (494)
T 1wp9_A 50 -------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSK 97 (494)
T ss_dssp -------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHH
T ss_pred -------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCC-CHHHEEEEECCCCHHHHHH
T ss_conf -------------------------------47985999978889999999999987475-6111687607753355665
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01689899971012401268899998135898753117999975346766688999986436667899997310001476
Q 000537 824 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 903 (1435)
Q Consensus 824 ~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~l~~~~~~~~kkrK~~~~~~rk~~~~kk~~~~~~~~~~~~p 903 (1435)
.+..++|+|+||+.+...+.. ..
T Consensus 98 ~~~~~~ivv~T~~~l~~~~~~---------------------------------------------------------~~ 120 (494)
T 1wp9_A 98 AWARAKVIVATPQTIENDLLA---------------------------------------------------------GR 120 (494)
T ss_dssp HHHHCSEEEECHHHHHHHHHT---------------------------------------------------------TS
T ss_pred HCCCCCEEEECHHHHHHHHHC---------------------------------------------------------CC
T ss_conf 335798999639999999860---------------------------------------------------------87
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHH--HHH-HHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 5454800999958743477333999--999-8122582999965568899356641100144456542578986633668
Q 000537 904 LAKVGWFRVVLDEAQSIKNHRTQVA--RAC-WGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 980 (1435)
Q Consensus 904 L~~i~W~RVILDEAH~IKN~~T~~s--kAl-~~L~A~~RwlLTGTPIqN~l~DLyslL~FL~~~pf~~~~~F~~~i~~pi 980 (1435)
+....|.+||+||||++++...... +.+ ......++|+|||||. |+..+++.++.++..........+...+...+
T Consensus 121 ~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 199 (494)
T 1wp9_A 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYV 199 (494)
T ss_dssp CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGC
T ss_pred CCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHC
T ss_conf 15654108999787566888819999999973288776999956998-88578999998507000502678758788752
Q ss_pred C--------CCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--------89623289999998574300020210489886579993799998059999999999999999999999997
Q 000537 981 S--------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA 1052 (1435)
Q Consensus 981 ~--------k~~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~lY~~L~~~sr~~~~~~~~ 1052 (1435)
. .........+...+..++.+|.+.....| .+++.. ..++..+... + ...+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~---~----~~~~~~~~~ 263 (494)
T 1wp9_A 200 KGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVLR---A----GQIINEEMA 263 (494)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHHH---H----HHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHHH---H----HHHHHHHHH
T ss_conf 78742689568858899999989899999999999735----565457-----7733557899---9----999998753
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 064-5101999999999999971581000245741466647999840608999999998653011246789998621101
Q 000537 1053 AGT-VKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVS 1131 (1435)
Q Consensus 1053 ~g~-~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit 1131 (1435)
.+. ..-.....+..+..++.+.... ...........+..+.... ........-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~------~~~~~~~~~- 317 (494)
T 1wp9_A 264 KGNHDLRGLLLYHAMALKLHHAIELL-------------------ETQGLSALRAYIKKLYEEA------KAGSTKASK- 317 (494)
T ss_dssp TTCCSTTTHHHHHHHHHHHHHHHHHH-------------------HHTCHHHHHHHHHHHHHHH------HTTCCHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHCHHHHHHHHHHHHHHH------CCCCCHHHH-
T ss_conf 35631134799998888899999999-------------------8525799999999998752------232114556-
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 35851112345331014899888853223344221023531023323589999988888874223588667865463689
Q 000537 1132 ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKI 1211 (1435)
Q Consensus 1132 ~CgHvfC~~Ci~e~l~~~~~~CP~~~C~~~l~~~~v~s~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi 1211 (1435)
.+++..-+.. ... .... .......++|+
T Consensus 318 ---~~~~~~~~~~----------------------~~~--~~~~-------------------------~~~~~~~~~k~ 345 (494)
T 1wp9_A 318 ---EIFSDKRMKK----------------------AIS--LLVQ-------------------------AKEIGLDHPKM 345 (494)
T ss_dssp ---HHHTSHHHHH----------------------HHH--HHHH-------------------------HHHHTCSCHHH
T ss_pred ---HHHHHHHHHH----------------------HHH--HHHH-------------------------HHHCCCCCHHH
T ss_conf ---6665078898----------------------999--9998-------------------------87458998699
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHH
Q ss_conf 99999999602789986555432234478866899999888898643420256898832022110269973999915588
Q 000537 1212 KAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTK 1291 (1435)
Q Consensus 1212 ~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSq~t~ 1291 (1435)
..+.+++..+.. ...+.|+|||+++..
T Consensus 346 ~~l~~~l~~~~~-----------------------------------------------------~~~~~k~lVF~~~~~ 372 (494)
T 1wp9_A 346 DKLKEIIREQLQ-----------------------------------------------------RKQNSKIIVFTNYRE 372 (494)
T ss_dssp HHHHHHHHHHHH-----------------------------------------------------HCTTCCEEEECSCHH
T ss_pred HHHHHHHHHHHC-----------------------------------------------------CCCCCEEEEEECCHH
T ss_conf 999999999843-----------------------------------------------------689975999976689
Q ss_pred HHHHHHHHHHHCCCCEEECCC--------CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 999999999816993882389--------989999999999871499953899613422235685556989996499994
Q 000537 1292 MLDLLEASLKDSSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1363 (1435)
Q Consensus 1292 ~LdlLe~~L~~~gI~~~rldG--------sms~~qR~~aI~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VIilDp~WNP 1363 (1435)
+++.++..|...|+.+..++| +|+..+|+++++.|++ +.+.||+ ++.++++|+||+.+++||++|++|||
T Consensus 373 ~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~ 450 (494)
T 1wp9_A 373 TAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-GEFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSA 450 (494)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-TSCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEE-ECCCCCCCCCCHHCCEEEEECCCCCH
T ss_conf 999999999975998079965665444445899999999999866-9946999-88841258871437989992898878
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 9288998955304998949999999599999999999999999999
Q 000537 1364 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1409 (1435)
Q Consensus 1364 a~e~QAigRvhRIGQkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~ 1409 (1435)
..+.|++||++|.|| +.+|+|++++|+||+++.++.+|.+++.
T Consensus 451 ~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 451 IRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 999998752257788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=348.78 Aligned_cols=255 Identities=29% Similarity=0.434 Sum_probs=220.4
Q ss_pred HHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 74300020210489886579993799998059999999999999999999999997064510199999999999997158
Q 000537 997 TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1076 (1435)
Q Consensus 997 ~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~lY~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~H 1076 (1435)
.--+||+|+++.. +|||+.+.+++|+|+++|+++|+.+.......+ ..........+++..+++|||+|+|
T Consensus 11 ~~~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 11 SSGLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5564164877875-----199977999981899999999999999999999----7403521288999999999998489
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 10002457414666479998406089999999986530112467899986211013585111234533101489988885
Q 000537 1077 PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTR 1156 (1435)
Q Consensus 1077 P~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgHvfC~~Ci~e~l~~~~~~CP~~ 1156 (1435)
|.++....
T Consensus 82 P~l~~~~~------------------------------------------------------------------------ 89 (271)
T 1z5z_A 82 PALLKGGE------------------------------------------------------------------------ 89 (271)
T ss_dssp THHHHCSC------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 98846873------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 32233442210235310233235899999888888742235886678654636899999999960278998655543223
Q 000537 1157 NCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRH 1236 (1435)
Q Consensus 1157 ~C~~~l~~~~v~s~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~~~~~~~~~~~l~~ 1236 (1435)
.....++|+.++.++|..+..
T Consensus 90 ----------------------------------------------~~~~~s~K~~~L~~ll~~~~~------------- 110 (271)
T 1z5z_A 90 ----------------------------------------------QSVRRSGKMIRTMEIIEEALD------------- 110 (271)
T ss_dssp ----------------------------------------------CCSTTCHHHHHHHHHHHHHHH-------------
T ss_pred ----------------------------------------------CCCCCCHHHHHHHHHHHHHHH-------------
T ss_conf ----------------------------------------------223468999999999999986-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEECCCCCC
Q ss_conf 4478866899999888898643420256898832022110269973999915588999999999816-993882389989
Q 000537 1237 SFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMS 1315 (1435)
Q Consensus 1237 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSq~t~~LdlLe~~L~~~-gI~~~rldGsms 1315 (1435)
.++|+||||+|+.++++|+..|... |+.+.+++|+++
T Consensus 111 ------------------------------------------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~ 148 (271)
T 1z5z_A 111 ------------------------------------------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 148 (271)
T ss_dssp ------------------------------------------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred ------------------------------------------CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf ------------------------------------------79969999551999999999998733984799979999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf 99999999987149995389961342223568555698999649999492889989553049989499999995999999
Q 000537 1316 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1395 (1435)
Q Consensus 1316 ~~qR~~aI~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VIilDp~WNPa~e~QAigRvhRIGQkr~V~VyrLi~kdTIEE 1395 (1435)
..+|++++++|+++++++|+|+++++||+||||+.|++||++|+||||..+.||+||+||+||+++|+||+|++++|+||
T Consensus 149 ~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 149 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHH
T ss_conf 99999999983289999789972235158867644899999799998518999998523238998569999854988999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9999999999999988189976763447799999974329
Q 000537 1396 RILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1435 (1435)
Q Consensus 1396 rIl~lq~kK~~l~~s~lg~d~~~~~~~~lt~~DL~~LF~~ 1435 (1435)
+|++++..|+.+++.+++.+. .....++.+||+.||.+
T Consensus 229 ~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 266 (271)
T 1z5z_A 229 KIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 266 (271)
T ss_dssp HHHHHHHHCHHHHTTGGGGTT--HHHHTSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCC--HHHHCCCHHHHHHHHCC
T ss_conf 999999999999999971670--54323899999999655
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=339.55 Aligned_cols=379 Identities=17% Similarity=0.183 Sum_probs=268.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67772889999999998110687777639981489854899999999709999887640244543114543344432356
Q 000537 666 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 745 (1435)
Q Consensus 666 ~v~L~phQk~al~wMl~kE~~~~~~rGGILADEMGLGKTiqaIALI~~~r~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 745 (1435)
..+|+|||.+++.++++. ..+||+++||+|||++++.++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH-------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC-------------------------------
T ss_conf 998688999999999965-------987999699998899999999980-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCE-EEEEECCCCCCCCC
Q ss_conf 4311234543333589998753002321028999838999770-329999999998714899938-99994898788810
Q 000537 746 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLS-VLVYHGSSRTKDPC 823 (1435)
Q Consensus 746 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~-VlvyhG~~R~kd~~ 823 (1435)
.+.+|||||. +|+.||.+++.+ + .+. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGI-F----GEEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGG-G----CGGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHH-C----CCCCEEEECCCCCC----
T ss_conf ---------------------------------99999998799999999999996-7----99636998787677----
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01689899971012401268899998135898753117999975346766688999986436667899997310001476
Q 000537 824 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 903 (1435)
Q Consensus 824 ~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~l~~~~~~~~kkrK~~~~~~rk~~~~kk~~~~~~~~~~~~p 903 (1435)
..+|+|+||+.+...+.
T Consensus 171 ---~~~Ivv~T~~~l~~~~~------------------------------------------------------------ 187 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE------------------------------------------------------------ 187 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH------------------------------------------------------------
T ss_pred ---CCCEEEEECHHHHHHHH------------------------------------------------------------
T ss_conf ---67789997689997799------------------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 54548009999587434773339999998122582999965568899356641100144456542578986633668889
Q 000537 904 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 983 (1435)
Q Consensus 904 L~~i~W~RVILDEAH~IKN~~T~~skAl~~L~A~~RwlLTGTPIqN~l~DLyslL~FL~~~pf~~~~~F~~~i~~pi~k~ 983 (1435)
...-.|..||+||||.+.+.... +.+..+.+.++++|||||.++.-.+
T Consensus 188 ~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------------------------ 235 (472)
T 2fwr_A 188 KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------------------------ 235 (472)
T ss_dssp HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG------------------------------
T ss_pred HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH------------------------------
T ss_conf 73687778999897578976899--9997357781899932766889778------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 62328999999857430002021048988657999379999805999999999999999999999999706451019999
Q 000537 984 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1063 (1435)
Q Consensus 984 ~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~e~vv~v~lS~eEr~lY~~L~~~sr~~~~~~~~~g~~~~~~~~I 1063 (1435)
..+..++.+.+.++...++..+ .+++.....+.+++++.++..|+.+...... +.....
T Consensus 236 -----~~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~-------- 294 (472)
T 2fwr_A 236 -----EILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARG-------- 294 (472)
T ss_dssp -----GSHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCC--------
T ss_pred -----HHHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----HHHHCC--------
T ss_conf -----9999972985765478987067----6788189999858998999999999999999----998647--------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 99999999971581000245741466647999840608999999998653011246789998621101358511123453
Q 000537 1064 LLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCIC 1143 (1435)
Q Consensus 1064 L~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgHvfC~~Ci~ 1143 (1435)
........ + ...+..
T Consensus 295 --------------~~~~~~~~---~-------------------------------------~~~~~~----------- 309 (472)
T 2fwr_A 295 --------------ITLRRAED---F-------------------------------------NKIVMA----------- 309 (472)
T ss_dssp --------------CTTTCCSS---S-------------------------------------TTTTTT-----------
T ss_pred --------------CCCCCHHH---H-------------------------------------HHHHHH-----------
T ss_conf --------------54224466---8-------------------------------------999987-----------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 31014899888853223344221023531023323589999988888874223588667865463689999999996027
Q 000537 1144 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAK 1223 (1435)
Q Consensus 1144 e~l~~~~~~CP~~~C~~~l~~~~v~s~~~l~~~~~~~~~~~~i~~~~s~~e~~e~~~~~~~~~~SsKi~allelL~~l~~ 1223 (1435)
...++. +...+.. .... ..-....+.|+..+.++++..
T Consensus 310 ------~~~~~~--~~~~~~~---~~~~-----------------------------~~~~~~~~~k~~~l~~~l~~~-- 347 (472)
T 2fwr_A 310 ------SGYDER--AYEALRA---WEEA-----------------------------RRIAFNSKNKIRKLREILERH-- 347 (472)
T ss_dssp ------TCCSSS--SSTTTHH---HHHH-----------------------------HHHHHSCSHHHHHHHHHHHHT--
T ss_pred ------HCCCHH--HHHHHHH---HHHH-----------------------------HHHHHCCHHHHHHHHHHHHHC--
T ss_conf ------236988--9999999---9999-----------------------------997633738999999999857--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 89986555432234478866899999888898643420256898832022110269973999915588999999999816
Q 000537 1224 PRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS 1303 (1435)
Q Consensus 1224 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~i~~~~eKVIVFSq~t~~LdlLe~~L~~~ 1303 (1435)
.+.|+|||+++..+++.+...|.
T Consensus 348 -------------------------------------------------------~~~k~lvF~~~~~~~~~l~~~l~-- 370 (472)
T 2fwr_A 348 -------------------------------------------------------RKDKIIIFTRHNELVYRISKVFL-- 370 (472)
T ss_dssp -------------------------------------------------------SSSCBCCBCSCHHHHHHHHHHTT--
T ss_pred -------------------------------------------------------CCCCEEEEECCHHHHHHHHHHHC--
T ss_conf -------------------------------------------------------89838999797999999999748--
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC-CCE
Q ss_conf 9938823899899999999998714999538996134222356855569899964999949288998955304998-949
Q 000537 1304 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT-RPV 1382 (1435)
Q Consensus 1304 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VIilDp~WNPa~e~QAigRvhRIGQk-r~V 1382 (1435)
+..++|.++..+|++++++|++ ++++||+ ++.++++|+|++.+++||++|++|||..+.|++||++|.||. +.|
T Consensus 371 ---~~~~~g~~~~~~R~~~~~~F~~-g~~~vLv-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 371 ---IPAITHRTSREEREEILEGFRT-GRFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp ---CCBCCSSSCSHHHHTHHHHHHH-SSCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred ---CCEEECCCCHHHHHHHHHHHHC-CCCCEEE-ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf ---6556289999999999999867-9988899-8570514846202868999899998889999876315777998539
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999599999999999999999999
Q 000537 1383 SVLRLTVKNTVEDRILALQQKKREMVA 1409 (1435)
Q Consensus 1383 ~VyrLi~kdTIEErIl~lq~kK~~l~~ 1409 (1435)
.+|.|+.++|+|+++.+++++|++.++
T Consensus 446 ~i~~lv~~~t~ee~~~~~r~~~~~~a~ 472 (472)
T 2fwr_A 446 VLYELISRGTGEVNTARRRKNAAKGAA 472 (472)
T ss_dssp EEEEEEECSCC----------------
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 999998199853799999987650589
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=319.90 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=113.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9973999915588999999999816------------9938823899899999999998714999538996134222356
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1346 (1435)
Q Consensus 1279 ~~eKVIVFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLLlSlkAGg~GL 1346 (1435)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|+.++.++||| +|.++++||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV-aT~~~~eGI 708 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-EECCHHCCC
T ss_conf 9974999969799999999998637353666616996578765678889999999999863159815999-807264277
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8555698999649999492889989553049989499999995999999999999999999998818
Q 000537 1347 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1413 (1435)
Q Consensus 1347 NLt~An~VIilDp~WNPa~e~QAigRvhRIGQkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~s~lg 1413 (1435)
|++.+++||+||++|||..+.|++|| ||.+++.+++|+.++|+|++.. ++..|.+++..++.
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHH
T ss_conf 60558989993899988999996487----7888877999986988999999-98899999999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=311.48 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=115.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9973999915588999999999816------------9938823899899999999998714999538996134222356
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1346 (1435)
Q Consensus 1279 ~~eKVIVFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLLlSlkAGg~GL 1346 (1435)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|..++++|++++.+.||| +|.++++||
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLV-aT~~~~~GI 708 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE-ECCCHHCCC
T ss_conf 9970899979589999999999747564665521898447754578989999999999851369704999-748054479
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8555698999649999492889989553049989499999995999999999999999999998818
Q 000537 1347 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1413 (1435)
Q Consensus 1347 NLt~An~VIilDp~WNPa~e~QAigRvhRIGQkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~s~lg 1413 (1435)
|++.+++||+||++|||..+.|++|| ||.+++.+++|+.++++|++ ..++..|..++..++.
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75108989994899988999985388----87878659999728768899-9988899999999999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=306.05 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=114.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9973999915588999999999816------------9938823899899999999998714999538996134222356
Q 000537 1279 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1346 (1435)
Q Consensus 1279 ~~eKVIVFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLLlSlkAGg~GL 1346 (1435)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|++++.++||| +|.++++||
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~Gi 467 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 467 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEE-EEC------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHCCC
T ss_conf 9854999976589999999999858775500014787367765565669899999999840469658999-767043377
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8555698999649999492889989553049989499999995999999999999999999998818
Q 000537 1347 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1413 (1435)
Q Consensus 1347 NLt~An~VIilDp~WNPa~e~QAigRvhRIGQkr~V~VyrLi~kdTIEErIl~lq~kK~~l~~s~lg 1413 (1435)
|++.+++||+||++|||....|++|| ||.+++.++.|+.++++|++ ..++..|.+++..++.
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75217889991899978899886387----87888418999827636777-7755799999999999
Done!