BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000538
(1435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced Enzyme
Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 1394 PKGKENLASVLKRY---RRRLSNKPAGTHEVSGPRKVLTAS 1431
P E LA + KRY R N P GTH GP+ L S
Sbjct: 229 PLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVS 269
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 1394 PKGKENLASVLKRY---RRRLSNKPAGTHEVSGPRKVLTAS 1431
P E LA + KRY R N P GTH GP+ L S
Sbjct: 229 PLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVS 269
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 1394 PKGKENLASVLKRY---RRRLSNKPAGTHEVSGPRKVLTAS 1431
P E LA + KRY R N P GTH GP+ L S
Sbjct: 229 PLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVS 269
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 1394 PKGKENLASVLKRY---RRRLSNKPAGTHEVSGPRKVLTAS 1431
P E LA + KRY R N P GTH GP+ L S
Sbjct: 229 PLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVS 269
>pdb|1ITH|A Chain A, Structure Determination And Refinement Of Homotetrameric
Hemoglobin From Urechis Caupo At 2.5 Angstroms Resolution
pdb|1ITH|B Chain B, Structure Determination And Refinement Of Homotetrameric
Hemoglobin From Urechis Caupo At 2.5 Angstroms Resolution
Length = 141
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 943 SSDSWNYQPATVHGCDLAHLSRMARDRNSDFLNGQRESPAPKSPSLGPTNYMDSVAFALG 1002
++DS ++ T + DLA + + S L G R +PA K+ +L NY+D V ALG
Sbjct: 25 AADSIFFKYLTAYPGDLAFFHKFS----SVPLYGLRSNPAYKAQTLTVINYLDKVVDALG 80
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 30.0 bits (66), Expect = 9.5, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 746 EARAKKLDLVLGVDSKPASLKIDTSAKEFSGYIPTVGRVPDSLLNSSLYDSPKHRVQNSM 805
+ K DLVLG D+ ID K+ + TVGRV + + NS+L+ K
Sbjct: 41 DKNGKNQDLVLGFDT------IDEFEKDAASIGKTVGRVANRIKNSTLHFDGKQYTXTPN 94
Query: 806 DSSYGVQRGSSSLWSNQMQLLDAYAQNANHSV 837
+ + + G + L + +++ ++ + SV
Sbjct: 95 NGPHYLHGGPNGLGYRKWEVVRHAPESVSFSV 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,648,861
Number of Sequences: 62578
Number of extensions: 1580670
Number of successful extensions: 3006
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3004
Number of HSP's gapped (non-prelim): 11
length of query: 1435
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1324
effective length of database: 8,027,179
effective search space: 10627984996
effective search space used: 10627984996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)