Query 000538
Match_columns 1435
No_of_seqs 250 out of 1365
Neff 3.8
Searched_HMMs 46136
Date Mon Apr 1 18:31:37 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 5E-109 1E-113 942.8 21.3 471 10-520 20-498 (503)
2 PRK00701 manganese transport p 100.0 2.3E-77 5E-82 695.7 43.7 404 10-459 25-438 (439)
3 COG1914 MntH Mn2+ and Fe2+ tra 100.0 8.6E-74 1.9E-78 660.3 44.5 400 10-459 8-414 (416)
4 TIGR01197 nramp NRAMP (natural 100.0 1.1E-73 2.3E-78 656.6 40.2 365 16-425 1-390 (390)
5 PF01566 Nramp: Natural resist 100.0 2.2E-61 4.8E-66 545.5 33.9 350 38-432 1-358 (358)
6 TIGR00813 sss transporter, SSS 98.9 3E-06 6.5E-11 98.8 32.2 120 25-147 11-135 (407)
7 TIGR02119 panF sodium/pantothe 98.8 3E-05 6.6E-10 92.4 40.2 118 27-147 50-176 (471)
8 PF00474 SSF: Sodium:solute sy 98.8 2.5E-06 5.4E-11 99.0 26.6 120 28-147 17-139 (406)
9 PRK15419 proline:sodium sympor 98.8 3.8E-05 8.2E-10 92.7 37.3 120 28-147 51-179 (502)
10 PRK09442 panF sodium/panthothe 98.7 0.00022 4.7E-09 85.7 42.3 115 30-147 54-177 (483)
11 PRK12488 acetate permease; Pro 98.7 0.00012 2.6E-09 89.7 39.1 122 25-147 75-199 (549)
12 TIGR02711 symport_actP cation/ 98.7 0.00016 3.5E-09 88.6 40.1 122 25-147 75-199 (549)
13 PRK09395 actP acetate permease 98.6 0.00015 3.2E-09 88.8 38.4 122 25-147 77-201 (551)
14 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.00036 7.9E-09 84.1 40.9 118 30-147 49-175 (487)
15 COG1457 CodB Purine-cytosine p 98.6 0.00015 3.3E-09 87.0 34.7 328 51-446 53-388 (442)
16 PF03222 Trp_Tyr_perm: Tryptop 98.6 0.00022 4.8E-09 84.2 35.8 158 20-192 4-169 (394)
17 TIGR03648 Na_symport_lg probab 98.5 0.0011 2.4E-08 81.2 40.0 120 25-147 40-164 (552)
18 PRK15132 tyrosine transporter 98.4 0.00038 8.3E-09 82.8 33.2 157 20-192 4-169 (403)
19 COG0591 PutP Na+/proline sympo 98.3 0.0039 8.5E-08 75.9 38.9 126 22-147 40-174 (493)
20 PRK13629 threonine/serine tran 98.3 0.004 8.7E-08 75.2 36.4 157 19-192 17-187 (443)
21 PRK11017 codB cytosine permeas 98.2 0.012 2.6E-07 69.9 38.6 94 51-145 43-137 (404)
22 PRK10484 putative transporter; 98.2 0.019 4.1E-07 70.3 40.1 105 28-135 49-164 (523)
23 TIGR00837 araaP aromatic amino 98.2 0.0018 3.9E-08 74.9 30.0 65 323-388 262-326 (381)
24 PRK10483 tryptophan permease; 98.2 0.0024 5.2E-08 76.5 31.3 152 19-190 11-174 (414)
25 PRK11375 allantoin permease; P 98.1 0.021 4.6E-07 69.6 39.2 46 51-96 61-106 (484)
26 TIGR00814 stp serine transport 98.1 0.0057 1.2E-07 72.8 33.5 49 53-101 33-88 (397)
27 PF01235 Na_Ala_symp: Sodium:a 98.1 0.0014 3E-08 78.5 28.0 139 30-184 30-180 (416)
28 PRK15049 L-asparagine permease 98.1 0.06 1.3E-06 65.6 43.9 33 324-356 298-330 (499)
29 PRK09664 tryptophan permease T 98.0 0.011 2.5E-07 70.9 33.8 155 20-191 10-174 (415)
30 PRK10238 aromatic amino acid t 98.0 0.033 7.2E-07 66.8 37.7 131 1-136 1-134 (456)
31 TIGR02358 thia_cytX probable h 98.0 0.039 8.4E-07 65.4 37.1 65 50-114 29-94 (386)
32 TIGR00910 2A0307_GadC glutamat 98.0 0.073 1.6E-06 65.1 39.8 50 46-96 29-83 (507)
33 COG3949 Uncharacterized membra 98.0 0.011 2.4E-07 69.0 30.8 128 14-146 5-133 (349)
34 PF05525 Branch_AA_trans: Bran 97.9 0.046 1E-06 66.1 34.4 332 25-417 9-354 (427)
35 TIGR00796 livcs branched-chain 97.8 0.069 1.5E-06 63.7 34.7 73 28-101 4-76 (378)
36 PRK11049 D-alanine/D-serine/gl 97.8 0.2 4.4E-06 60.4 41.1 36 324-359 289-324 (469)
37 TIGR00930 2a30 K-Cl cotranspor 97.8 0.12 2.6E-06 68.1 38.6 31 329-359 386-416 (953)
38 TIGR00800 ncs1 NCS1 nucleoside 97.7 0.035 7.6E-07 66.5 31.1 74 32-106 27-103 (442)
39 TIGR01773 GABAperm gamma-amino 97.7 0.27 5.8E-06 58.8 43.4 38 58-97 57-94 (452)
40 COG0814 SdaC Amino acid permea 97.6 0.13 2.8E-06 61.8 33.7 86 22-107 12-100 (415)
41 PRK15433 branched-chain amino 97.6 0.25 5.5E-06 60.2 36.0 80 25-105 14-93 (439)
42 PRK10249 phenylalanine transpo 97.6 0.33 7.1E-06 58.5 42.4 72 58-131 66-138 (458)
43 PRK11387 S-methylmethionine tr 97.6 0.34 7.4E-06 58.4 45.5 35 324-358 284-318 (471)
44 PF02133 Transp_cyt_pur: Perme 97.5 0.0086 1.9E-07 70.9 22.2 85 30-115 20-108 (440)
45 TIGR00905 2A0302 transporter, 97.5 0.45 9.7E-06 57.5 40.9 32 326-357 279-310 (473)
46 TIGR00835 agcS amino acid carr 97.5 0.15 3.2E-06 61.9 31.0 40 323-363 329-368 (425)
47 PRK10580 proY putative proline 97.4 0.55 1.2E-05 56.4 42.8 36 60-97 56-91 (457)
48 COG4147 DhlC Predicted symport 97.4 0.14 3.1E-06 62.5 29.4 101 47-147 71-173 (529)
49 COG4145 PanF Na+/panthothenate 97.4 0.35 7.5E-06 57.9 31.7 117 26-147 48-175 (473)
50 PRK10746 putative transport pr 97.3 0.75 1.6E-05 55.7 39.7 73 60-134 57-130 (461)
51 COG0733 Na+-dependent transpor 97.3 0.43 9.2E-06 58.2 31.8 77 25-104 13-97 (439)
52 TIGR00907 2A0304 amino acid pe 97.0 1.4 3E-05 53.3 34.6 32 324-355 299-330 (482)
53 TIGR00908 2A0305 ethanolamine 97.0 1.3 2.8E-05 52.9 42.8 38 58-97 52-89 (442)
54 TIGR00909 2A0306 amino acid tr 97.0 1.3 2.8E-05 52.4 36.6 36 324-359 273-308 (429)
55 COG1113 AnsP Gamma-aminobutyra 97.0 0.91 2E-05 55.6 30.3 99 43-142 39-141 (462)
56 TIGR00911 2A0308 L-type amino 96.9 1.7 3.6E-05 53.0 37.9 37 58-96 89-125 (501)
57 COG1115 AlsT Na+/alanine sympo 96.9 1.3 2.8E-05 54.2 31.2 138 30-186 74-226 (452)
58 PRK11021 putative transporter; 96.9 1.5 3.1E-05 52.0 39.5 37 58-96 44-80 (410)
59 COG1114 BrnQ Branched-chain am 96.9 1.8 3.9E-05 52.7 33.6 75 25-100 11-85 (431)
60 PRK10197 gamma-aminobutyrate t 96.7 2.2 4.7E-05 51.5 40.6 38 58-97 37-74 (446)
61 TIGR03810 arg_ornith_anti argi 96.7 2.3 5E-05 51.4 41.8 39 57-96 46-84 (468)
62 TIGR03813 put_Glu_GABA_T putat 96.7 2.3 5.1E-05 51.4 40.7 65 26-96 10-79 (474)
63 TIGR00913 2A0310 amino acid pe 96.6 2.6 5.6E-05 50.9 45.2 39 58-97 48-86 (478)
64 TIGR00912 2A0309 spore germina 96.6 2.2 4.7E-05 49.5 33.9 37 58-97 46-82 (359)
65 PRK11357 frlA putative fructos 96.5 2.8 6E-05 50.2 37.5 43 52-96 47-91 (445)
66 PRK10644 arginine:agmatin anti 96.4 3.2 7E-05 49.8 41.0 38 57-96 51-88 (445)
67 PF13520 AA_permease_2: Amino 96.3 3.4 7.3E-05 48.7 37.4 37 323-359 266-302 (426)
68 COG1953 FUI1 Cytosine/uracil/t 95.8 7.6 0.00017 48.4 30.4 82 34-115 53-140 (497)
69 COG0531 PotE Amino acid transp 95.6 6.9 0.00015 46.3 37.8 30 326-355 283-312 (466)
70 PRK10655 potE putrescine trans 95.3 9 0.0002 45.8 41.4 35 60-96 52-86 (438)
71 PLN03074 auxin influx permease 94.7 15 0.00033 45.5 30.7 62 355-418 336-398 (473)
72 PF00324 AA_permease: Amino ac 94.5 0.83 1.8E-05 55.1 15.8 31 323-353 282-312 (478)
73 TIGR03428 ureacarb_perm permea 94.2 18 0.00039 44.1 38.5 43 52-96 53-95 (475)
74 PF03845 Spore_permease: Spore 93.9 16 0.00034 42.2 31.0 85 55-143 37-128 (320)
75 PRK09928 choline transport pro 93.8 13 0.00029 48.0 24.8 73 341-420 419-497 (679)
76 PRK10836 lysine transporter; P 93.7 23 0.0005 43.4 41.2 32 326-357 293-324 (489)
77 KOG1289 Amino acid transporter 93.6 5.6 0.00012 50.0 20.6 31 423-453 446-476 (550)
78 TIGR00906 2A0303 cationic amin 92.2 40 0.00088 42.5 40.2 33 324-356 308-340 (557)
79 PF00209 SNF: Sodium:neurotran 91.5 5.7 0.00012 49.2 17.2 27 326-352 344-370 (523)
80 KOG1286 Amino acid transporter 90.9 50 0.0011 42.1 24.5 35 327-361 315-352 (554)
81 PF02554 CstA: Carbon starvati 89.3 4.7 0.0001 48.6 13.2 62 34-97 67-132 (376)
82 KOG1303 Amino acid transporter 88.3 77 0.0017 39.4 28.0 64 355-420 330-398 (437)
83 COG0833 LysP Amino acid transp 88.0 89 0.0019 39.9 28.9 136 22-181 60-201 (541)
84 KOG2349 Na+:iodide/myo-inosito 87.9 18 0.00039 46.2 17.5 113 30-146 58-175 (585)
85 COG1966 CstA Carbon starvation 87.1 1E+02 0.0022 39.5 34.3 53 43-96 75-131 (575)
86 PRK15238 inner membrane transp 86.0 98 0.0021 38.2 38.9 66 27-96 17-87 (496)
87 PRK10435 cadB lysine/cadaverin 84.7 1E+02 0.0022 37.3 44.0 37 57-96 48-84 (435)
88 PRK13108 prolipoprotein diacyl 80.7 96 0.0021 38.9 19.0 18 675-692 421-438 (460)
89 PRK15015 carbon starvation pro 79.1 2.2E+02 0.0048 37.5 37.2 59 36-96 100-162 (701)
90 COG1294 AppB Cytochrome bd-typ 77.2 1.8E+02 0.0039 35.4 22.7 26 244-274 119-144 (346)
91 COG3949 Uncharacterized membra 76.9 39 0.00085 40.7 13.5 81 326-420 77-158 (349)
92 PRK09824 PTS system beta-gluco 76.7 60 0.0013 42.1 16.1 99 123-230 205-312 (627)
93 KOG1288 Amino acid transporter 76.2 2E+02 0.0042 38.2 19.8 32 329-360 371-402 (945)
94 COG1292 BetT Choline-glycine b 75.8 2.4E+02 0.0053 36.2 25.6 69 345-420 419-490 (537)
95 PF01490 Aa_trans: Transmembra 71.0 0.29 6.3E-06 56.7 -5.4 68 20-97 15-86 (409)
96 PLN00151 potassium transporter 70.5 3.6E+02 0.0079 36.5 20.8 16 743-758 786-801 (852)
97 PLN00149 potassium transporter 69.9 3.9E+02 0.0084 35.9 23.3 15 743-757 713-727 (779)
98 PF12794 MscS_TM: Mechanosensi 68.7 92 0.002 37.3 14.3 15 375-389 133-147 (340)
99 PF02990 EMP70: Endomembrane p 67.2 1.1E+02 0.0025 38.5 15.3 13 507-519 482-494 (521)
100 PF05977 MFS_3: Transmembrane 63.7 4E+02 0.0087 33.8 29.9 40 96-136 14-53 (524)
101 PRK09950 putative transporter; 63.2 4.2E+02 0.0091 33.9 27.5 76 339-420 410-491 (506)
102 PF05313 Pox_P21: Poxvirus P21 63.1 58 0.0013 36.3 10.2 49 402-451 87-136 (189)
103 PTZ00206 amino acid transporte 62.5 3.9E+02 0.0084 33.3 34.0 21 79-99 121-141 (467)
104 PRK00293 dipZ thiol:disulfide 59.4 5E+02 0.011 33.5 20.2 58 394-457 326-383 (571)
105 KOG1305 Amino acid transporter 58.4 4.5E+02 0.0098 32.7 26.7 52 40-93 30-81 (411)
106 PF06738 DUF1212: Protein of u 55.7 49 0.0011 35.7 8.3 11 117-127 114-124 (193)
107 COG1283 NptA Na+/phosphate sym 55.6 5.8E+02 0.012 33.1 22.4 94 326-420 173-268 (533)
108 PRK03356 L-carnitine/gamma-but 55.6 5.6E+02 0.012 32.9 28.8 74 340-420 414-493 (504)
109 TIGR00844 c_cpa1 na(+)/h(+) an 53.5 7.4E+02 0.016 33.7 25.8 23 210-232 132-154 (810)
110 KOG1304 Amino acid transporter 53.3 5.8E+02 0.013 32.4 25.9 76 369-446 362-438 (449)
111 PF02028 BCCT: BCCT family tra 51.8 6.2E+02 0.013 32.3 29.5 73 341-420 402-477 (485)
112 PF14362 DUF4407: Domain of un 47.2 1.2E+02 0.0026 35.3 10.2 31 113-143 30-60 (301)
113 PRK03612 spermidine synthase; 45.9 3.2E+02 0.0069 34.7 14.2 50 40-89 23-73 (521)
114 PRK09796 PTS system cellobiose 44.8 7.3E+02 0.016 31.6 16.8 98 124-230 208-314 (472)
115 TIGR00842 bcct choline/carniti 43.7 7.9E+02 0.017 31.2 29.1 76 339-420 364-445 (453)
116 PRK09509 fieF ferrous iron eff 42.8 5.4E+02 0.012 30.0 14.6 19 160-178 73-91 (299)
117 COG4858 Uncharacterized membra 42.7 5.1E+02 0.011 29.6 13.3 82 403-497 132-213 (226)
118 TIGR00844 c_cpa1 na(+)/h(+) an 42.1 1.1E+03 0.023 32.3 18.3 26 49-74 205-230 (810)
119 PRK02983 lysS lysyl-tRNA synth 41.2 6.3E+02 0.014 35.3 16.8 50 404-454 115-164 (1094)
120 PRK11007 PTS system trehalose( 40.6 8.4E+02 0.018 31.0 16.5 91 131-230 231-326 (473)
121 COG2966 Uncharacterized conser 39.6 1.4E+02 0.0031 34.6 9.2 28 117-145 136-163 (250)
122 PRK10929 putative mechanosensi 39.3 1.1E+03 0.024 33.2 18.4 13 376-388 607-619 (1109)
123 CHL00204 ycf1 Ycf1; Provisiona 38.9 1.3E+02 0.0027 43.2 9.8 83 330-414 33-146 (1832)
124 PRK15433 branched-chain amino 38.1 5.9E+02 0.013 32.1 14.5 63 81-143 267-329 (439)
125 KOG2568 Predicted membrane pro 37.9 4.2E+02 0.0091 34.1 13.2 27 401-427 338-368 (518)
126 PF05525 Branch_AA_trans: Bran 37.5 7.3E+02 0.016 31.2 15.1 63 81-143 263-326 (427)
127 PF06570 DUF1129: Protein of u 37.2 5.3E+02 0.011 28.7 12.8 50 405-457 120-170 (206)
128 PF07907 YibE_F: YibE/F-like p 36.9 7.3E+02 0.016 28.9 18.7 23 124-146 46-69 (244)
129 PRK10263 DNA translocase FtsK; 36.8 1.3E+02 0.0027 42.2 9.3 21 1352-1372 1237-1259(1355)
130 PF02535 Zip: ZIP Zinc transpo 34.8 7.3E+02 0.016 28.4 13.9 34 37-70 184-217 (317)
131 COG5594 Uncharacterized integr 33.9 1.4E+03 0.03 31.2 17.8 30 420-449 654-683 (827)
132 PRK03557 zinc transporter ZitB 33.7 5E+02 0.011 30.7 12.6 19 160-178 81-99 (312)
133 TIGR00341 conserved hypothetic 33.6 9.7E+02 0.021 29.3 16.1 42 82-123 199-244 (325)
134 PLN00150 potassium ion transpo 32.2 1.5E+03 0.032 30.9 24.5 16 743-758 713-728 (779)
135 KOG1397 Ca2+/H+ antiporter VCX 32.0 3.6E+02 0.0078 33.7 11.0 53 44-100 95-147 (441)
136 KOG2234 Predicted UDP-galactos 31.6 5.4E+02 0.012 31.6 12.3 69 336-409 187-268 (345)
137 COG3696 Putative silver efflux 31.6 1.6E+03 0.034 31.3 17.3 23 205-227 392-416 (1027)
138 PF06664 MIG-14_Wnt-bd: Wnt-bi 31.2 9.1E+02 0.02 28.3 14.8 24 397-420 116-139 (298)
139 KOG1720 Protein tyrosine phosp 31.0 31 0.00066 39.3 2.1 32 1358-1389 126-166 (225)
140 PRK11469 hypothetical protein; 30.8 5.5E+02 0.012 28.6 11.6 23 124-146 129-151 (188)
141 PRK09509 fieF ferrous iron eff 30.3 8E+02 0.017 28.7 13.4 51 408-458 52-103 (299)
142 COG3610 Uncharacterized conser 30.2 2.8E+02 0.006 30.4 8.9 23 188-210 80-102 (156)
143 PRK11281 hypothetical protein; 29.9 1.5E+03 0.032 32.1 17.4 14 375-388 627-640 (1113)
144 PF03419 Peptidase_U4: Sporula 29.9 5.1E+02 0.011 30.3 11.7 18 56-73 9-26 (293)
145 TIGR02840 spore_YtaF putative 29.8 3.8E+02 0.0083 30.1 10.3 23 125-147 153-175 (206)
146 PF05297 Herpes_LMP1: Herpesvi 29.8 18 0.00038 42.6 0.0 126 38-199 43-171 (381)
147 COG4232 Thiol:disulfide interc 29.5 1.4E+03 0.031 30.0 17.7 68 381-455 315-382 (569)
148 PF13722 DUF4161: C-terminal d 29.2 5.2E+02 0.011 27.4 10.4 27 335-361 13-39 (127)
149 COG1230 CzcD Co/Zn/Cd efflux s 28.0 7E+02 0.015 30.0 12.4 63 160-228 84-148 (296)
150 TIGR03732 lanti_perm_MutE lant 27.4 5.5E+02 0.012 29.2 11.1 29 401-429 44-73 (241)
151 TIGR02854 spore_II_GA sigma-E 26.8 6E+02 0.013 30.0 11.6 14 60-73 13-26 (288)
152 PF10810 DUF2545: Protein of u 26.5 3.1E+02 0.0068 26.8 7.4 30 96-125 3-34 (80)
153 KOG2348 Urea transporter [Amin 26.2 2.6E+02 0.0057 35.5 8.7 72 56-133 98-170 (667)
154 COG5522 Predicted integral mem 26.1 1.1E+03 0.024 27.5 14.5 67 441-508 161-232 (236)
155 KOG0569 Permease of the major 25.9 1.5E+03 0.032 29.0 15.7 28 392-419 114-141 (485)
156 COG2898 Uncharacterized conser 25.0 1.6E+03 0.036 29.2 17.0 26 435-460 134-159 (538)
157 COG0659 SUL1 Sulfate permease 24.7 1.6E+03 0.035 29.1 26.3 95 15-118 51-155 (554)
158 PF02322 Cyto_ox_2: Cytochrome 24.6 7.5E+02 0.016 29.8 12.0 28 62-89 168-195 (328)
159 PRK12821 aspartyl/glutamyl-tRN 23.9 1.5E+03 0.033 29.1 14.4 18 219-236 250-267 (477)
160 KOG1278 Endosomal membrane pro 23.2 9.5E+02 0.021 31.5 12.8 24 434-457 488-511 (628)
161 PRK11026 ftsX cell division AB 22.9 1.2E+03 0.026 27.9 13.1 63 37-100 166-229 (309)
162 TIGR01995 PTS-II-ABC-beta PTS 22.5 3.6E+02 0.0077 35.1 9.4 23 124-146 198-225 (610)
163 PF02322 Cyto_ox_2: Cytochrome 22.2 1.4E+03 0.031 27.5 21.0 25 245-274 113-137 (328)
164 PRK11715 inner membrane protei 21.9 1.5E+03 0.032 28.8 14.1 45 27-75 285-329 (436)
165 COG0385 Predicted Na+-dependen 21.6 8.6E+02 0.019 29.7 11.6 68 377-448 141-209 (319)
166 smart00194 PTPc Protein tyrosi 21.6 98 0.0021 34.7 3.9 49 1361-1409 173-237 (258)
167 PF10136 SpecificRecomb: Site- 21.3 2E+03 0.044 29.0 17.7 57 3-59 314-378 (643)
168 PF03784 Cyclotide: Cyclotide 20.7 19 0.0004 29.6 -1.3 12 1262-1274 2-13 (30)
169 PF06011 TRP: Transient recept 20.7 1.7E+03 0.036 27.6 20.2 28 476-503 386-413 (438)
170 COG2271 UhpC Sugar phosphate p 20.5 1.1E+03 0.024 30.0 12.5 99 34-146 224-341 (448)
171 COG0053 MMT1 Predicted Co/Zn/C 20.1 1.5E+03 0.033 27.0 13.3 165 91-276 9-176 (304)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-109 Score=942.83 Aligned_cols=471 Identities=30% Similarity=0.448 Sum_probs=417.5
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhc
Q 000538 10 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1435)
Q Consensus 10 ~~~~~~rkLlaflGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Y 89 (1435)
.++.+|||+|+|+|||||||+||+|||||+||+|+||++||+|||++++++++++++|+||||||+||||||||+||++|
T Consensus 20 ~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~Y 99 (503)
T KOG1291|consen 20 PPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREEY 99 (503)
T ss_pred ccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHH
Q 000538 90 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1435)
Q Consensus 90 gk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~ 169 (1435)
|||+++.||+|+|+|+|++|||||||+|||+|+||++|+|+||+||++|+|+|+++.+ ||.||+|.++
T Consensus 100 pk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~k------------yGiRklE~~~ 167 (503)
T KOG1291|consen 100 PKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDK------------YGIRKLEAFF 167 (503)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhc------------cchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 6999999999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCccccc-cccccccC---CChHHHHHHHhcCcchHHHHHHhhHhhhhccccccccchhc-
Q 000538 170 ICTAGIILLSYVLGVLISQPEIPLSV-NGMLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGAL- 244 (1435)
Q Consensus 170 ~~LI~IMaLsFV~elfis~Pd~geVl-~GLvP~lp---g~sl~~AVAILGATIMPHNlYLHSaLVqsR~~~~d~sk~a~- 244 (1435)
++|+.+|++||.++++.++|+.++++ +|++|+++ ++.++++||++||+|||||+||||++||+|+.+++..++..
T Consensus 168 ~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~e 247 (503)
T KOG1291|consen 168 AFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYE 247 (503)
T ss_pred HHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHH
Confidence 99999999999999999999998766 55679987 67899999999999999999999999999998876543322
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHH-hhccccCCcccccHHHHHHHHHHhhhhcccccCcccccccccchhhhhhhh
Q 000538 245 --CHDHFFAILCIFSGIYMVNYVLMNSA-ANLFYSTGLVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEM 321 (1435)
Q Consensus 245 --r~D~~fsi~~i~lgsFLINlaVViVa-AavfygtGi~V~T~qDAa~aLepL~A~~fc~~~~~~Ll~~~~l~s~gl~~a 321 (1435)
++....+.+ .+.++|+||.+++.|+ |+.||++. .++...+ |-+++ +..++.++++.|.++.
T Consensus 248 a~~y~~ies~i-al~vsF~in~~VisvF~a~~f~~~t-----~~~v~g~---------~~~~s-~~a~~~Dl~~~~~~L~ 311 (503)
T KOG1291|consen 248 ANNYFPIESAI-ALFVSFSINLFVISVFTAAGFYNKT-----ILDVAGA---------CLYNS-NEADDADLFSAGLLLQ 311 (503)
T ss_pred hhhcccHHHHH-HHHHHHHHHHHHHHHHHHhhhcCcc-----hhhhhhh---------hhcCC-CcchhhhhHHHHHHHH
Confidence 222222222 2346899999999999 99998872 3333221 22222 1112235677888777
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Q 000538 322 QVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQ 401 (1435)
Q Consensus 322 ~lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQ 401 (1435)
..+ |++++++|++||||||||||||||||||+|||||++|+|++|+|+++||++||+|+++|+++.|.+++.+|++++|
T Consensus 312 ~~~-g~~a~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~n 390 (503)
T KOG1291|consen 312 CYF-GPAALYIFAIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLN 390 (503)
T ss_pred HHh-ccHHHHHHHHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHH
Confidence 777 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHH
Q 000538 402 VMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAV 481 (1435)
Q Consensus 402 VI~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~LNIyfVv~~~fg~s~w~~~l~~~~~~~v~~~~~v 481 (1435)
|+++++|||+++||++||++|+|||+|+|+...+.++|.+.++++.+|.||+++++.. + .+..+..+.+
T Consensus 391 vl~S~~LPFa~iPLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~-------~----~~~~~~~~~~ 459 (503)
T KOG1291|consen 391 VLQSLQLPFAVIPLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWS-------L----VGKHSKIVVT 459 (503)
T ss_pred HHHHHhhhHHHhhHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeeeehhh-------h----cCCceeeehh
Confidence 9999999999999999999999999999999999999999999999999999866531 1 1112234556
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccc
Q 000538 482 FLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRA 520 (1435)
Q Consensus 482 ~~i~~~~yl~f~lyL~~~pl~s~s~~~~~~~~~~~~~~~ 520 (1435)
+...+++|++|++||+++|+.......+++.|+++.++.
T Consensus 460 ~~~~~~~y~~~i~yL~~~~l~~~~~~~~~~~~~~~~~~~ 498 (503)
T KOG1291|consen 460 VNVWTLAYLAFILYLAATCLNAYSIISLAMSSSMHAQNA 498 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhcccc
Confidence 667888999999999999999999999999999999885
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=2.3e-77 Score=695.66 Aligned_cols=404 Identities=28% Similarity=0.492 Sum_probs=368.9
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhc
Q 000538 10 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1435)
Q Consensus 10 ~~~~~~rkLlaflGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Y 89 (1435)
+.+..|+++++++||||+++++|+|||||+|++++||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|
T Consensus 25 ~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~ 104 (439)
T PRK00701 25 SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRY 104 (439)
T ss_pred CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHC
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHH
Q 000538 90 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1435)
Q Consensus 90 gk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~ 169 (1435)
||++++++|+.+++++++++++|++|+|+|++++||+|++++++++++++++++++.+ .++|++|+++
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~------------~~y~~~E~i~ 172 (439)
T PRK00701 105 PRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQR------------RGFRPLEAII 172 (439)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh------------cCccHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888775443 4578999999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCccccccccccc---cCC-ChHHHHHHHhcCcchHHHHHHhhHhhhhcccccc--cc---
Q 000538 170 ICTAGIILLSYVLGVLISQPEIPLSVNGMLTK---FSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVN--IS--- 240 (1435)
Q Consensus 170 ~~LI~IMaLsFV~elfis~Pd~geVl~GLvP~---lpg-~sl~~AVAILGATIMPHNlYLHSaLVqsR~~~~d--~s--- 240 (1435)
.+++++|.+||+++++.++|||+++++|++|+ +|. +.++.++|++||||||||+|+||+++++|+.+.+ ..
T Consensus 173 ~~lv~~m~l~f~~~~~~~~P~~~~v~~Gl~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~ 252 (439)
T PRK00701 173 GGLLLVIAAAFIVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREA 252 (439)
T ss_pred HHHHHHHHHHHHHHHheeCCCHHHHhcccCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHH
Confidence 99999999999999999999999999998899 874 5668899999999999999999999988753211 11
Q ss_pred chhchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcc-cccHHHHHHHHHHhhhhcccccCcccccccccchhhhhh
Q 000538 241 KGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLV-LLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIV 319 (1435)
Q Consensus 241 k~a~r~D~~fsi~~i~lgsFLINlaVViVaAavfygtGi~-V~T~qDAa~aLepL~A~~fc~~~~~~Ll~~~~l~s~gl~ 319 (1435)
.+..+.|...++ +++++||.+|++++|++||++|.. +.+..|++++|+|
T Consensus 253 l~~~r~Dt~~g~----~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p-------------------------- 302 (439)
T PRK00701 253 LRFTRIDSAIAL----TIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSP-------------------------- 302 (439)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHH--------------------------
Confidence 222355766664 346899999999999999998875 7899999999999
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Q 000538 320 EMQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIF 399 (1435)
Q Consensus 320 ~a~lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~ 399 (1435)
.+ |++++++|++|||+|||+|++++++++++++++|++|+.++|.|+.++|+++++|+++++++.+..+|.+++++
T Consensus 303 ---~~-G~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~ 378 (439)
T PRK00701 303 ---LL-GAAAATLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVL 378 (439)
T ss_pred ---HH-hHHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45 69999999999999999999999999999999999999999999999999999999987766543469999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000538 400 TQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFG 459 (1435)
Q Consensus 400 sQVI~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~LNIyfVv~~~fg 459 (1435)
+||+++++|||+++|+++++|+|++||+|||+++.++++|+++++++++|+++++..++|
T Consensus 379 aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~ 438 (439)
T PRK00701 379 SQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYLLYQTFTG 438 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999988764
No 3
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-74 Score=660.32 Aligned_cols=400 Identities=28% Similarity=0.435 Sum_probs=363.8
Q ss_pred CCchhHHHHHhhhhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhc
Q 000538 10 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1435)
Q Consensus 10 ~~~~~~rkLlaflGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Y 89 (1435)
.....||++++++||||||++||+|||||+|++|+|++|||+|+|++++++++++++|++++|||+||||+|+|.||++|
T Consensus 8 ~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y 87 (416)
T COG1914 8 KKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERY 87 (416)
T ss_pred chHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHH
Q 000538 90 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1435)
Q Consensus 90 gk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~ 169 (1435)
++++++++|+.+|++++++|++|++|+|+|+|+|||+|+.+|+++|+++++++++++ ++|++|+++
T Consensus 88 ~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~--------------~~r~~E~~v 153 (416)
T COG1914 88 LPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK--------------GYRLLERVV 153 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc--------------chHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888652 568999999
Q ss_pred HHHHHHHHHHHHHhHhhhCCCccccccc-cccccCC-ChHHHHHHHhcCcchHHHHHHhhHhhhhccccccccchhch--
Q 000538 170 ICTAGIILLSYVLGVLISQPEIPLSVNG-MLTKFSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALC-- 245 (1435)
Q Consensus 170 ~~LI~IMaLsFV~elfis~Pd~geVl~G-LvP~lpg-~sl~~AVAILGATIMPHNlYLHSaLVqsR~~~~d~sk~a~r-- 245 (1435)
..++.+|.+||++++++++|+|+++.++ ++|+.+. +.++.++|++|||||||++|+||++||++....+..+++.+
T Consensus 154 ~~l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~ 233 (416)
T COG1914 154 LILGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYS 233 (416)
T ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHH
Confidence 9999999999999999999999999999 6798876 78899999999999999999999999973322222233333
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc--ccccHHHHHHHHHHhhhhcccccCcccccccccchhhhhhhhh
Q 000538 246 -HDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGL--VLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQ 322 (1435)
Q Consensus 246 -~D~~fsi~~i~lgsFLINlaVViVaAavfygtGi--~V~T~qDAa~aLepL~A~~fc~~~~~~Ll~~~~l~s~gl~~a~ 322 (1435)
.|.++++ ..++++|.++++++|..||.++. .+.+.+++...+.|
T Consensus 234 ~~d~~i~~----~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~----------------------------- 280 (416)
T COG1914 234 RIDTIIGM----IIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAP----------------------------- 280 (416)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhh-----------------------------
Confidence 3554443 24689999999999999998874 35567777776666
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Q 000538 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQV 402 (1435)
Q Consensus 323 lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQV 402 (1435)
.+ |..+..+|++++++||++|+++++|++|++|+||++++.++|.|++++|.++++|++++.+++| ++.++++++|+
T Consensus 281 ~~-G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqv 357 (416)
T COG1914 281 LL-GSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLNWRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQV 357 (416)
T ss_pred hh-hhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhcccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHH
Confidence 45 5889999999999999999999999999999999999999999999999999999888888888 58999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000538 403 MVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFG 459 (1435)
Q Consensus 403 I~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~LNIyfVv~~~fg 459 (1435)
+++++|||+++|++.++++|++||+|+|++|.++++|+++++++.+|+++++.++++
T Consensus 358 l~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 358 LLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988764
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=1.1e-73 Score=656.64 Aligned_cols=365 Identities=28% Similarity=0.473 Sum_probs=329.1
Q ss_pred HHHHhhhhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHH
Q 000538 16 YRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 95 (1435)
Q Consensus 16 rkLlaflGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~ 95 (1435)
|++|+++||||+++++|+|||||+|++++||+|||+|||++++++++++++|+|++|+|+||||+|+|+||++|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHH
Q 000538 96 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGI 175 (1435)
Q Consensus 96 ~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~I 175 (1435)
.+|++++++++++|++|++|+|+|+|++||+|+|++++++++++++++++.+ .++|++|+++.+++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~------------~~yr~~E~~~~~lv~~ 148 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDK------------PGLRILEAFVALLVTI 148 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHh------------CCceeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888887666543 4678999999999999
Q ss_pred HHHHHHHhHhhhCCCccccccc-cccccC---CChHHHHHHHhcCcchHHHHHHhhHhhhhccccccccc---h------
Q 000538 176 ILLSYVLGVLISQPEIPLSVNG-MLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISK---G------ 242 (1435)
Q Consensus 176 MaLsFV~elfis~Pd~geVl~G-LvP~lp---g~sl~~AVAILGATIMPHNlYLHSaLVqsR~~~~d~sk---~------ 242 (1435)
|.+||++++++++|||+++++| ++|++| .++++.++|++|+||||||+|+||++||+|+++++... +
T Consensus 149 m~~~f~~~~~~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~ 228 (390)
T TIGR01197 149 VAICFAYELFYAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRP 228 (390)
T ss_pred HHHHHHHHHheeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhch
Confidence 9999999999999999999888 569765 46788899999999999999999999999986543211 1
Q ss_pred ----------hchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC-C-cccccHHHHHHHHHHhhhhcccccCccccccc
Q 000538 243 ----------ALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYST-G-LVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHT 310 (1435)
Q Consensus 243 ----------a~r~D~~fsi~~i~lgsFLINlaVViVaAavfygt-G-i~V~T~qDAa~aLepL~A~~fc~~~~~~Ll~~ 310 (1435)
-.+.|..+++ +.+.+++|.++++++|++||++ + .+..+..|++++|+|
T Consensus 229 ~~~~~~~~~~~~~~d~~~~i---~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p----------------- 288 (390)
T TIGR01197 229 IEAAIALSVSFSINEFVIAL---FTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGC----------------- 288 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHH-----------------
Confidence 1123444432 2345678999999999999975 5 567788999999998
Q ss_pred ccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCc
Q 000538 311 HPMISIRIVEMQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGA 390 (1435)
Q Consensus 311 ~~l~s~gl~~a~lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G~ 390 (1435)
.+ |++++++|++|||+|||||++|++++||++|+||++|+.++|.|++++|+++++|+++++++.|.
T Consensus 289 ------------~~-G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~ 355 (390)
T TIGR01197 289 ------------LF-SPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGR 355 (390)
T ss_pred ------------Hh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 68999999999999999999999999999999999999999999999999999999988887766
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc
Q 000538 391 EGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM 425 (1435)
Q Consensus 391 e~~~qLLI~sQVI~SLqLPFALIPLL~ftSsR~IM 425 (1435)
.+|.++++++||+++++|||+++|+++++|+|++|
T Consensus 356 ~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 356 EGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 67999999999999999999999999999999998
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=2.2e-61 Score=545.48 Aligned_cols=350 Identities=28% Similarity=0.433 Sum_probs=320.6
Q ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 38 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIA 117 (1435)
Q Consensus 38 IaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVIGtA 117 (1435)
|+|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|||++++++|+.+++++++++++|++|+|
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhCCCccccccc
Q 000538 118 HGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNG 197 (1435)
Q Consensus 118 IALnLLFGIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~IMaLsFV~elfis~Pd~geVl~G 197 (1435)
+|+++++|+|.+++++++++++++++++.+ .++|++|+++.+++++|.+||++.++.++|||+++++|
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~~------------~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g 148 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLSS------------GGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARG 148 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHHh------------ccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhh
Confidence 999999999999999999999999988432 34589999999999999999999999999999999999
Q ss_pred cc-cccCC-ChHHHHHHHhcCcchHHHHHHhhHhhhhccccccc-----cchhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 198 ML-TKFSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNI-----SKGALCHDHFFAILCIFSGIYMVNYVLMNSA 270 (1435)
Q Consensus 198 Lv-P~lpg-~sl~~AVAILGATIMPHNlYLHSaLVqsR~~~~d~-----sk~a~r~D~~fsi~~i~lgsFLINlaVViVa 270 (1435)
++ |++|. ++++.++|++|||+||||+|+||+++++|+++.+. ..+..+.|..+++ .+++++|+++++++
T Consensus 149 ~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~----~~~~li~~ai~i~~ 224 (358)
T PF01566_consen 149 LVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGM----IVSFLINVAILIVA 224 (358)
T ss_pred ccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 98 99998 88999999999999999999999999999865421 1344566777664 35689999999999
Q ss_pred hhccccCCcccccHHHHHHHHHHhhhhcccccCcccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 000538 271 ANLFYSTGLVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 350 (1435)
Q Consensus 271 AavfygtGi~V~T~qDAa~aLepL~A~~fc~~~~~~Ll~~~~l~s~gl~~a~lLgG~~A~~IFAIGLLAAGqSSTITgT~ 350 (1435)
|.++|+.+..+.+.+|++++|+| .+|++|++++|++|+|+|+|+|++++++
T Consensus 225 A~~l~~~~~~~~~~~~~~~~L~~-----------------------------~~G~~~a~~lF~igl~~a~fss~i~~~~ 275 (358)
T PF01566_consen 225 AAVLYPGGSEVETAAQAAQALEP-----------------------------LLGSPWARYLFAIGLFAAGFSSSITATL 275 (358)
T ss_pred HHHhcccccchhhHHHHHHHHHH-----------------------------hcCchHHHHhHHHHHHHHHHhhHHHhcc
Confidence 99999777778899999999998 5633799999999999999999999999
Q ss_pred hHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCC
Q 000538 351 SGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEG-VYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHK 429 (1435)
Q Consensus 351 AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G~e~-~~qLLI~sQVI~SLqLPFALIPLL~ftSsR~IMGefr 429 (1435)
+++++++++++++.+.+.|+.+++...++|+++++++.+... |+++++++||+++++|||+++|+++++|||++||+||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~ 355 (358)
T PF01566_consen 276 AGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGAPGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYR 355 (358)
T ss_pred ccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcc
Confidence 999999999999999999998999999999998887766543 4899999999999999999999999999999999999
Q ss_pred chH
Q 000538 430 ISQ 432 (1435)
Q Consensus 430 NS~ 432 (1435)
|+|
T Consensus 356 n~~ 358 (358)
T PF01566_consen 356 NSW 358 (358)
T ss_pred cCC
Confidence 986
No 6
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.87 E-value=3e-06 Score=98.81 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=87.4
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHH----HHHHHHHHHHhhhheecCCCHHHHHHhhcCc-hhHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 99 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAt----Ilg~llQ~LSARLGVVTGK~LAEicRe~Ygk-~~a~~LWI 99 (1435)
|+-+.+.+++.+........+-.+|+..+|..+... ++++++...--|.| ..++.|.++++|++ ..+.+.-+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 344556688888888888888899988777655433 23333333334555 57899999999998 45555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 100 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 100 maELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
+..+..+..-..++.|.+..++.++|+|.+.++++.++.++++..++.
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG 135 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGG 135 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcc
Confidence 445555566667788999999999999999999999888877777765
No 7
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.84 E-value=3e-05 Score=92.39 Aligned_cols=118 Identities=12% Similarity=0.197 Sum_probs=80.8
Q ss_pred hhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHH--------HHHHHHhhhheecCCCHHHHHHhhcCc-hhHHHH
Q 000538 27 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI--------FCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFI 97 (1435)
Q Consensus 27 LVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~--------llQ~LSARLGVVTGK~LAEicRe~Ygk-~~a~~L 97 (1435)
-+.+++++.+.+......+..+|+...|......++++ .+....-|.+. .++.|.++++|++ ..+++.
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~T~~e~l~~Ryg~~~~~~~~ 126 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNA---ITINDVLKARYNNKFLVWLS 126 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHcCCCchHHHH
Confidence 34456788888887777777778763333222222222 23333344443 6799999999995 445565
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 98 GVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 98 WImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
.+...+..+..-..++.|.+..++.++|+|.+.++++.++.+.++..++.
T Consensus 127 ~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 127 SISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 55555556666677889999999999999999999998887777776654
No 8
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.76 E-value=2.5e-06 Score=99.04 Aligned_cols=120 Identities=11% Similarity=0.242 Sum_probs=89.2
Q ss_pred hhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHH-HHHHhhhheecCCCHHHHHHhhcCchh--HHHHHHHHHHH
Q 000538 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWT--CVFIGVQTELS 104 (1435)
Q Consensus 28 VSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~ll-Q~LSARLGVVTGK~LAEicRe~Ygk~~--a~~LWImaELA 104 (1435)
+.++.+..+.+....+.+..+|+..+|..+...+..+++ -.++.|+=-....+++|.++++|++.. +++.+++..+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 345678888999999999999999999887766655544 446778877778899999999999987 66666655556
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 105 VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 105 IIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
.+..-..++.|.+..++.++|+|.+.+++++++.+.+..+++.
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhh
Confidence 6666667888999999999999999999988877776666654
No 9
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.75 E-value=3.8e-05 Score=92.72 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=83.0
Q ss_pred hhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHH-HHHHHHhhhheec-----CCCHHHHHHhhcCc---hhHHHHH
Q 000538 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVT-----GKDLAQICGEEYDK---WTCVFIG 98 (1435)
Q Consensus 28 VSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~-llQ~LSARLGVVT-----GK~LAEicRe~Ygk---~~a~~LW 98 (1435)
+.+.++....+......+..+|+..+|..+-..+..+ .+..++.|+-+-+ -.++.|..++||++ ..+.+..
T Consensus 51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~ 130 (502)
T PRK15419 51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA 130 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence 3445788888888888888899888787654333222 2334455554332 24789999999995 3444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 99 VQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 99 ImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
++..+..+.....++.|.+..++.++|+|.+.+++++++.+++..+++.
T Consensus 131 i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 131 LVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGG 179 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhh
Confidence 4444444445556678899999999999999999999888888887765
No 10
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.73 E-value=0.00022 Score=85.71 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=77.8
Q ss_pred hhcccCchHHHHHHhHHhhhhHHHHHHHHHHH--------HHHHHHHHHhhhheecCCCHHHHHHhhcCchh-HHHHHHH
Q 000538 30 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF--------AAIFCQYLSARIAVVTGKDLAQICGEEYDKWT-CVFIGVQ 100 (1435)
Q Consensus 30 IAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtI--------lg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~-a~~LWIm 100 (1435)
+.+++.+.+........++|+..+|..+...+ ++..+..+.-|.+. .+..|.++++|++.. +++..+.
T Consensus 54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~T~~e~l~~Ryg~~~~~~~~~i~ 130 (483)
T PRK09442 54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNA---VTLNDMLRARYQSRLLVWLASLS 130 (483)
T ss_pred HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccHHHHHHHHhCChHHHHHHHHH
Confidence 44677777777777777777765554332222 22233444455554 678999999999653 4444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 101 TELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 101 aELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
..+..+..-..++.|.+..++.++|+|.+.+++++++.++++..++.
T Consensus 131 ~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 177 (483)
T PRK09442 131 LLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGG 177 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 44445555567788999999999999999999998887777776664
No 11
>PRK12488 acetate permease; Provisional
Probab=98.68 E-value=0.00012 Score=89.67 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=91.8
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHH--HHHHhhhheecCCCHHHHHHhhcC-chhHHHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC--QYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 101 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~ll--Q~LSARLGVVTGK~LAEicRe~Yg-k~~a~~LWIma 101 (1435)
|+.+++.++..+.+......+..+|+.-+|..+- ..+++++ -.++.|+=-..-.++.|.+.+||+ +..+++..+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g-~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYALG-VLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 5566677788888888888888999988876643 3333322 234444433333689999999998 66787777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 102 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 102 ELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
-+..+..-..++.|.+..++.++|+|.+.+++++++.+++..+++.
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GG 199 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGG 199 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccc
Confidence 6666777778899999999999999999999999888888887765
No 12
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.68 E-value=0.00016 Score=88.58 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=89.2
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHH--HHHHHHhhhheecCCCHHHHHHhhcC-chhHHHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI--FCQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 101 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~--llQ~LSARLGVVTGK~LAEicRe~Yg-k~~a~~LWIma 101 (1435)
|+-++..+++...+......+..+|+.-+|..+ ..++++ ++-.++.|+--..-.++.|.+.+||+ |..+++..+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 445566678888888888888899999887553 333333 12234554444334789999999997 56677666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 102 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 102 ELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+.+...++.
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GG 199 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGG 199 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 5555666667888999999999999999999999988888887765
No 13
>PRK09395 actP acetate permease; Provisional
Probab=98.65 E-value=0.00015 Score=88.83 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=90.7
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHH--HHHHHhhhheecCCCHHHHHHhhcC-chhHHHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF--CQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 101 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~l--lQ~LSARLGVVTGK~LAEicRe~Yg-k~~a~~LWIma 101 (1435)
|+-+.+.++..+.+......+..+|+.-+|..+-. .++++ .-.++.|+=-..-.+..|.+++||+ |..+++..+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~-~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGF-LVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 45566677888888888888888998877765432 23222 1224555544445789999999998 55777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 102 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 102 ELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
.+..+..-..+++|.+..++.++|+|.+.+++++++.+++...++.
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GG 201 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGG 201 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcc
Confidence 6666667778899999999999999999999999998888887765
No 14
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.64 E-value=0.00036 Score=84.06 Aligned_cols=118 Identities=10% Similarity=0.158 Sum_probs=75.0
Q ss_pred hhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHH-HHHHHhhhheec-----CCCHHHHHHhhcCch---hHHHHHHH
Q 000538 30 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF-CQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFIGVQ 100 (1435)
Q Consensus 30 IAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~l-lQ~LSARLGVVT-----GK~LAEicRe~Ygk~---~a~~LWIm 100 (1435)
++++....+......+..+|+.-+|..+-..+..++ .-.++.|+-..+ -.++.|.+++||++. .+.+..++
T Consensus 49 At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai~ 128 (487)
T TIGR02121 49 ASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISALI 128 (487)
T ss_pred HHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHHH
Confidence 444555555555666667777777775422222122 222344443222 245999999999953 33333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 101 TELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 101 aELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
..+..+..-..++.|.+..++.++|+|.+.+++++++.+++...++.
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 129 ILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhh
Confidence 44444444556677889999989999999999999888888877764
No 15
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.58 E-value=0.00015 Score=86.99 Aligned_cols=328 Identities=12% Similarity=0.034 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 000538 51 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELST 130 (1435)
Q Consensus 51 ~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~ 130 (1435)
+-++.+++.++++.++--..+-.|..||..=...-|..+|.+-+++.-++..++.++--.-+++=.+.+.+...++|.|+
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 45788899999999999999999999999999999999998877665555556666654444444444444335789999
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhHhh-hCC-CccccccccccccCCChHH
Q 000538 131 CVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLI-SQP-EIPLSVNGMLTKFSGDSAF 208 (1435)
Q Consensus 131 GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~IMaLsFV~elfi-s~P-d~geVl~GLvP~lpg~sl~ 208 (1435)
++++.++.+.+..+++ |.-.+++|++... ++.+.|++.... .++ ........-.|. ...++.
T Consensus 133 ~ili~g~l~~l~~ifG------------~r~l~~l~~~a~~---~~~~lf~~l~~~~~~~~~~~~~~~~~~~~-~~~~fl 196 (442)
T COG1457 133 GILIIGVLMTLVTIFG------------YRALHKLERIAVP---LLLLLFLYLLALLFRSKGGLDALWVKGPT-SPLSFL 196 (442)
T ss_pred HHHHHHHHHHHHHHHh------------HHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccccceeeccCCC-cchhHH
Confidence 9999988887777654 3334555655443 344444433222 232 222221111122 223344
Q ss_pred HHHHHhcCcchHHHHHHhhHhhhhccccccccchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccHHHHH
Q 000538 209 SIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAM 288 (1435)
Q Consensus 209 ~AVAILGATIMPHNlYLHSaLVqsR~~~~d~sk~a~r~D~~fsi~~i~lgsFLINlaVViVaAavfygtGi~V~T~qDAa 288 (1435)
.+++++=+..+-+.-|.--. +|-.+++.+ +|.++. .+++.++-+.++++++|..--..|.. + -+.
T Consensus 197 ~a~slv~g~~~sw~~~~aDy---sRy~~~~t~-----~~~~~~---~~~G~~l~~~~~~ilGa~~a~a~g~~--~--~~~ 261 (442)
T COG1457 197 SALSLVIGSFASWGPYAADY---SRYAPSPTP-----SKAFLA---AVLGFFLGTSFMMILGAALAAAAGNA--D--SIA 261 (442)
T ss_pred HHHHHHHHHHHhhhhhhhhh---hhhcCCCch-----HHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCC--c--hHH
Confidence 44444333333333222111 121111111 233333 23355667777888877653223221 1 011
Q ss_pred HHHHHhhhhcccccCcccccccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcch
Q 000538 289 SLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWL 368 (1435)
Q Consensus 289 ~aLepL~A~~fc~~~~~~Ll~~~~l~s~gl~~a~lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~ 368 (1435)
+.+. .+| .++ ..-.+++..+..++.....|++..-+..... +.+++.
T Consensus 262 ~~~~------------------------------~~G-~~g-~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~-~l~k~~ 308 (442)
T COG1457 262 DVML------------------------------GLG-GFG-LPAILILVLGTVTTNANNLYSAGLSFANIIP-KLSKVT 308 (442)
T ss_pred HHHH------------------------------hcc-cHH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh-hhhhHH
Confidence 1111 233 221 2223455556666677778887655555444 234444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCc-----ccccCCCchHHHHHHHHHHH
Q 000538 369 HHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLF-RVASSR-----QIMGVHKISQYHEFLVLITF 442 (1435)
Q Consensus 369 RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALIPLL-~ftSsR-----~IMGefrNS~~~nILawli~ 442 (1435)
+..++.++ +.+++.+++... ......|...+....-|...|-+- +|..+| +++..++.-.+.-..+|++.
T Consensus 309 ~~v~~~v~--igt~la~~~~~f--~~~f~~Fl~~i~~~i~P~~~I~iad~~~~rr~~~~~~~~~~~~~~~~~g~~aw~~~ 384 (442)
T COG1457 309 RVVIAGVG--IGTLLALAGPFF--YNFFENFLLLLGYFIPPWGGVMIADYFIVRRRYSAYNIDDWEKGENLPGGVAWIAG 384 (442)
T ss_pred HHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchHHHHHH
Confidence 44444331 344433222111 345666777788888888887765 333333 33333333344455666665
Q ss_pred HHHH
Q 000538 443 MGML 446 (1435)
Q Consensus 443 llIi 446 (1435)
+++-
T Consensus 385 ~iv~ 388 (442)
T COG1457 385 LIVG 388 (442)
T ss_pred HHHH
Confidence 5554
No 16
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.57 E-value=0.00022 Score=84.24 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=94.3
Q ss_pred hhhhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheec--CCCHHHHHHhhcCchhHHHH
Q 000538 20 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT--GKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 20 aflGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVT--GK~LAEicRe~Ygk~~a~~L 97 (1435)
+.+|=.+++....+|+|=+.--.++|...=.-.+++++++-++.+.-+.+-+++-.-+ |.++.+++++++||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 4566677787788999998888875444333344445555555566666666666654 88999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------CChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHH
Q 000538 98 GVQTELSVILLDLTMVLGIAHGLNLLM------GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWIC 171 (1435)
Q Consensus 98 WImaELAIIasDIaEVIGtAIALnLLF------GIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~ 171 (1435)
|+...+..-+.-++-+.|.+--+.-++ ++|.+++.++..+..-.+++++ .+.+.++..+
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g---------------~~~v~~~n~~ 148 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFG---------------TKAVDRINRV 148 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHH
Confidence 765443333322232333332222222 3455665555444333344333 2334555555
Q ss_pred HHHHHHHHHHHhHhhhCCCcc
Q 000538 172 TAGIILLSYVLGVLISQPEIP 192 (1435)
Q Consensus 172 LI~IMaLsFV~elfis~Pd~g 192 (1435)
++..|.++|+...+..-|.|.
T Consensus 149 lv~~~i~~~~~l~~~~~p~~~ 169 (394)
T PF03222_consen 149 LVFGMIISFIILVVYLIPHWN 169 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhcC
Confidence 666777777666666666664
No 17
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.49 E-value=0.0011 Score=81.22 Aligned_cols=120 Identities=12% Similarity=0.210 Sum_probs=88.0
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHH----HHHHHHHHHHHHhhhheecCCCHHHHHHhhcC-chhHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLV----FNFAAIFCQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGV 99 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLL----AtIlg~llQ~LSARLGVVTGK~LAEicRe~Yg-k~~a~~LWI 99 (1435)
|+-+.+.++..+.+......+..+||..+|..+- ..++++++-..--|+|+ .++.|.+.+||+ |..+++..+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 3445556677777777777788888887766531 22344555666667776 479999999998 445666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 100 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 100 maELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
...++.+..-..++.|.++.++.++|+|.+.++++.++.+.+...++.
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG 164 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGG 164 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 555666666667788999999999999999999999888877777664
No 18
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.44 E-value=0.00038 Score=82.79 Aligned_cols=157 Identities=10% Similarity=0.076 Sum_probs=90.4
Q ss_pred hhhhhHHhhhhhcccCchHHHHHHhHHhh-hhHHHHHHHHHHHHHHHHHHHHhhhh--eecCCCHHHHHHhhcCchhHHH
Q 000538 20 PAVLPVLLISIGYVDPGKWAVIIEGGAHF-GFDLVALMLVFNFAAIFCQYLSARIA--VVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 20 aflGPGfLVSIAYIDPGNIaTdlqAGA~f-GY~LLWVLLLAtIlg~llQ~LSARLG--VVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+.+|=.+++....+|+|=+.=-+++|... -..+++.++...+|.+.-.. -+|+- .--|.++-++.++++||.+.++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 56888899999999999999888877632 22233333322223332222 22222 2247889999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHh---h--CChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHH
Q 000538 97 IGVQTELSVILLDLTMVLG-IAHGLNLL---M--GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWI 170 (1435)
Q Consensus 97 LWImaELAIIasDIaEVIG-tAIALnLL---F--GIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~ 170 (1435)
.|+...+...+.-.+=+.| ..+--|.+ + ++|.+.+.++..+..-++++.+ .+.+.++..
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g---------------~~~v~~~n~ 147 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG---------------TSSVDLFNR 147 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc---------------HHHHHHHHH
Confidence 7766544443333222223 11111222 2 3466666655544444455433 344555555
Q ss_pred HHHHHHHHHHHHhHhhhCCCcc
Q 000538 171 CTAGIILLSYVLGVLISQPEIP 192 (1435)
Q Consensus 171 ~LI~IMaLsFV~elfis~Pd~g 192 (1435)
+++..|.++|+...+..-|+|.
T Consensus 148 ~L~~~~ii~~~~~~~~l~p~~~ 169 (403)
T PRK15132 148 FLFSAKIIFLVVMLALMMPHIH 169 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6666777777666566667765
No 19
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.33 E-value=0.0039 Score=75.90 Aligned_cols=126 Identities=15% Similarity=0.263 Sum_probs=87.7
Q ss_pred hhhHH-hhhhhcccCchHHHHHHhHHhh--hhHHHHHHHHHHHHH-HHHHHHHhhhheec----CCCHHHHHHhhcC-ch
Q 000538 22 VLPVL-LISIGYVDPGKWAVIIEGGAHF--GFDLVALMLVFNFAA-IFCQYLSARIAVVT----GKDLAQICGEEYD-KW 92 (1435)
Q Consensus 22 lGPGf-LVSIAYIDPGNIaTdlqAGA~f--GY~LLWVLLLAtIlg-~llQ~LSARLGVVT----GK~LAEicRe~Yg-k~ 92 (1435)
+||+. .++++..|-+.|+---..|..| |+.-+|..+...+.. +..-.++.|+=..+ -.++.|.+++||+ +.
T Consensus 40 lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~ 119 (493)
T COG0591 40 LGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKI 119 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChH
Confidence 45552 2334445555555555556655 888899887753333 33455556665556 5679999999999 77
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 93 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 93 ~a~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
.+.+.-+..-+..+..-..++.|.+..+++++|++.+.+.++.++.+.+..+++.
T Consensus 120 lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG 174 (493)
T COG0591 120 LRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGG 174 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 7776666555666666666788999889999999999998887777777777765
No 20
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.27 E-value=0.004 Score=75.18 Aligned_cols=157 Identities=12% Similarity=0.046 Sum_probs=100.5
Q ss_pred HhhhhhHHhhh--hhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheec---CCCHHHHHHhhcCchh
Q 000538 19 VPAVLPVLLIS--IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT---GKDLAQICGEEYDKWT 93 (1435)
Q Consensus 19 laflGPGfLVS--IAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVT---GK~LAEicRe~Ygk~~ 93 (1435)
|+...=+|+++ ...+|+|=+.-=+++|...=+-++-+++++-++.++-.++-+|.-.-. |.++.+..++++||.+
T Consensus 17 w~~~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g 96 (443)
T PRK13629 17 WRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTG 96 (443)
T ss_pred CccccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhH
Confidence 33344444444 447999999999999988777777777777777777766666765544 7899999999999999
Q ss_pred HHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHhhC---ChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhh
Q 000538 94 CVFIGVQTELSVIL---LD---LTMVLGIAHGLNLLMG---VELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYK 164 (1435)
Q Consensus 94 a~~LWImaELAIIa---sD---IaEVIGtAIALnLLFG---IPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RK 164 (1435)
.++.|+...+++.. .- +++.+..-+. |- +| +|.++..++.++....+++ .|.+.
T Consensus 97 ~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~-~q-l~~~~~~r~l~slifv~~l~~iv~---------------~G~~~ 159 (443)
T PRK13629 97 GVVITFLYFFAICPLLWIYGVTITNTFMTFWE-NQ-LGFAPLNRGFVALFLLLLMAFVIW---------------FGKDL 159 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCcCCccHHHHHHHHHHHHHHHHH---------------hhHHH
Confidence 88777665444322 22 2222211111 11 23 3666555554444444443 34455
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhCCCcc
Q 000538 165 AKLLWICTAGIILLSYVLGVLISQPEIP 192 (1435)
Q Consensus 165 LE~l~~~LI~IMaLsFV~elfis~Pd~g 192 (1435)
+.++..+|+..+.++|+...+.--|.|.
T Consensus 160 v~kv~~~Lv~~~i~~l~~l~~~LiP~w~ 187 (443)
T PRK13629 160 MVKVMSYLVWPFIASLVLISLSLIPYWN 187 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6777777778888888877777778876
No 21
>PRK11017 codB cytosine permease; Provisional
Probab=98.22 E-value=0.012 Score=69.87 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCChhH
Q 000538 51 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL-LDLTMVLGIAHGLNLLMGVELS 129 (1435)
Q Consensus 51 ~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAIIa-sDIaEVIGtAIALnLLFGIPLw 129 (1435)
+-++.+++++++..++--+.++.|..||.+-...+|..||..-..+..++--+..++ .-++.+++ +.+++-++|++..
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCCHH
Confidence 446778888888899999999999999999999999999976555433332222222 33344443 3445556788766
Q ss_pred HHHHHHHHHHHHHHHh
Q 000538 130 TCVFLAAADAILFPFF 145 (1435)
Q Consensus 130 ~GVLITaldtflfL~L 145 (1435)
.++++..+..+++.++
T Consensus 122 ~~~~i~~~l~~~~~~~ 137 (404)
T PRK11017 122 LLIVLSGLLMTVTAYF 137 (404)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655555555543
No 22
>PRK10484 putative transporter; Provisional
Probab=98.17 E-value=0.019 Score=70.27 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=57.4
Q ss_pred hhhhcccCchHHHHHHhHHhhhhHHHHHHHHHH----HHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHH
Q 000538 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 103 (1435)
Q Consensus 28 VSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAt----Ilg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaEL 103 (1435)
+.+.++..+.+......+..+|+..+|..+... ++++++-.---|.|+ .++.|.+++||++..+.++.+..-+
T Consensus 49 l~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Ryg~~~~~~~~~~~~i 125 (523)
T PRK10484 49 LLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGI---TTIPDFLEERYDKTTRRIVSILFLI 125 (523)
T ss_pred HHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ccHHHHHHHhcCchhHHHHHHHHHH
Confidence 344568888888888888888877653222222 222222111124444 4789999999998765543332222
Q ss_pred HHHHHHHHH-HHHHHHHHHH------hhCChhHHHHHHH
Q 000538 104 SVILLDLTM-VLGIAHGLNL------LMGVELSTCVFLA 135 (1435)
Q Consensus 104 AIIasDIaE-VIGtAIALnL------LFGIPLw~GVLIT 135 (1435)
..+...+.. +.+.+++++- ++|+|.+.+++++
T Consensus 126 ~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 126 GYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 222222222 2234454433 4688887776654
No 23
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.17 E-value=0.0018 Score=74.92 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=38.8
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHh
Q 000538 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTS 388 (1435)
Q Consensus 323 lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~ 388 (1435)
.+++++...+..++.+.|-.+|.+.+.++..--+.+.++++.++.. +.....++.+|.++++.+.
T Consensus 262 ~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 262 VLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKG-RFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CchhhhhhHHhHHHHHHHh
Confidence 3555666667777777776777777777765445555665332222 3333455666777766554
No 24
>PRK10483 tryptophan permease; Provisional
Probab=98.16 E-value=0.0024 Score=76.50 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=89.2
Q ss_pred HhhhhhHHhhhhhcccCchHHHHH-HhHHhhhhHHHHHHHHH---HHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhH
Q 000538 19 VPAVLPVLLISIGYVDPGKWAVII-EGGAHFGFDLVALMLVF---NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTC 94 (1435)
Q Consensus 19 laflGPGfLVSIAYIDPGNIaTdl-qAGA~fGY~LLWVLLLA---tIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a 94 (1435)
.+.+|=.+|++...+|.|=++--. .+|+-|.+.++-.++.- +.-++++-|..-+.. -|.++..+-++..||.+.
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 467888999999999999887543 34455554444333322 223345666666654 477899999999999888
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHH-HHHHHh--h--CChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHH
Q 000538 95 VFIGVQT---ELSVILLDLTMVLGIA-HGLNLL--M--GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAK 166 (1435)
Q Consensus 95 ~~LWIma---ELAIIasDIaEVIGtA-IALnLL--F--GIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE 166 (1435)
++.|+.. ..+.+.+-+. |.+ +--+++ + ++|.+.+.++..+..-.+++.+. +.+.
T Consensus 89 ~i~~~s~lfl~Y~Ll~AYis---g~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt---------------~~vd 150 (414)
T PRK10483 89 VVNGISIAFVLYILTYAYIS---ASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST---------------KAVS 150 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh---------------hHHH
Confidence 8766643 2333333332 222 222222 2 45888887776665555665543 3334
Q ss_pred HHHHHHHHHHHHHHHHhHhhhCCC
Q 000538 167 LLWICTAGIILLSYVLGVLISQPE 190 (1435)
Q Consensus 167 ~l~~~LI~IMaLsFV~elfis~Pd 190 (1435)
++..++++.|.++|++.+...-|+
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~ 174 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGH 174 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445566777776554443343
No 25
>PRK11375 allantoin permease; Provisional
Probab=98.13 E-value=0.021 Score=69.59 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 51 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 51 ~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+.++.+++++++..++-.+.++.|..||.+..-.+|..||..-..+
T Consensus 61 ~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l 106 (484)
T PRK11375 61 SIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALF 106 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchH
Confidence 5577888888999999999999999999999999999999765443
No 26
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.13 E-value=0.0057 Score=72.84 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh------hheec-CCCHHHHHHhhcCchhHHHHHHHH
Q 000538 53 VALMLVFNFAAIFCQYLSAR------IAVVT-GKDLAQICGEEYDKWTCVFIGVQT 101 (1435)
Q Consensus 53 LWVLLLAtIlg~llQ~LSAR------LGVVT-GK~LAEicRe~Ygk~~a~~LWIma 101 (1435)
.|..+++.++++++-++++| +.--. |+++.|..++.+||++..++++.-
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY 88 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLY 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHH
Confidence 56666667767776666666 45555 889999999999999887665443
No 27
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.11 E-value=0.0014 Score=78.53 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=82.2
Q ss_pred hhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCC---C------HHHHHHhhcCc-hhHHHHHH
Q 000538 30 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGK---D------LAQICGEEYDK-WTCVFIGV 99 (1435)
Q Consensus 30 IAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK---~------LAEicRe~Ygk-~~a~~LWI 99 (1435)
++-+|+|||+--..|=+.-|-.-+..+.++.+++....+.-.-||+...+ + .+--+++-.++ |.+++.-+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 44699999998888878888888877888888888887777766665432 1 44455555553 32222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhCChhHH-HHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 000538 100 QTELSV-ILLDLTMVLGIAHGLNLLMGVELST-CVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIIL 177 (1435)
Q Consensus 100 maELAI-IasDIaEVIGtAIALnLLFGIPLw~-GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~IMa 177 (1435)
++.++. ++..+.+.-.++.+++--|++|.|+ |++++++ +.+.+ + -|.+++-.+...++=+|+
T Consensus 110 ~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l-~~~vi-~--------------GGikrI~~v~~~lVP~Ma 173 (416)
T PF01235_consen 110 FLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAIL-VALVI-F--------------GGIKRIAKVSEKLVPFMA 173 (416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHH-HHHHH-H--------------cchhHHHHHHHHHHHHHH
Confidence 211111 1112333444566667668996554 5444443 33332 2 355666667667777788
Q ss_pred HHHHHhH
Q 000538 178 LSYVLGV 184 (1435)
Q Consensus 178 LsFV~el 184 (1435)
+.|++..
T Consensus 174 ~~Yi~~~ 180 (416)
T PF01235_consen 174 ILYILGG 180 (416)
T ss_pred HHHHHHH
Confidence 8776543
No 28
>PRK15049 L-asparagine permease; Provisional
Probab=98.10 E-value=0.06 Score=65.63 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=23.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000538 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1435)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VM 356 (1435)
.|++++..+..++++.+.+++..++.++...++
T Consensus 298 ~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 298 LGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676677777777777777777777775444
No 29
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.04 E-value=0.011 Score=70.91 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=85.3
Q ss_pred hhhhhHHhhhhhcccCchHHHHH-HhHHhhhhHHHHHHHH---HHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHH
Q 000538 20 PAVLPVLLISIGYVDPGKWAVII-EGGAHFGFDLVALMLV---FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 95 (1435)
Q Consensus 20 aflGPGfLVSIAYIDPGNIaTdl-qAGA~fGY~LLWVLLL---AtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~ 95 (1435)
+.+|=.+|++...+|+|=++--. .+|+-|-+.++-.++. .+.-++++-|...+.. .|.++..+.++..||.+.+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 77897888888889999876543 3444444433332222 2233445666666664 5889999999999999888
Q ss_pred HHHHHH---HHHHHHHHHH---HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHH
Q 000538 96 FIGVQT---ELSVILLDLT---MVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLW 169 (1435)
Q Consensus 96 ~LWIma---ELAIIasDIa---EVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~ 169 (1435)
+.|+.. ..+...+-+. +++...+.-..-.++|.+.+.++.++..-.+++.+. +.+.++.
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt---------------~~vd~~n 152 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS---------------LAASRIT 152 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch---------------hHHHHHH
Confidence 877644 2333333332 222211111011145666544444444444554443 2333333
Q ss_pred HHHHHHHHHHHHHhHhhhCCCc
Q 000538 170 ICTAGIILLSYVLGVLISQPEI 191 (1435)
Q Consensus 170 ~~LI~IMaLsFV~elfis~Pd~ 191 (1435)
.++++.|.++|++.+...-|+.
T Consensus 153 r~l~~~~ii~f~~~~~~l~~~i 174 (415)
T PRK09664 153 SLFLGLKIISFVIVFGSFFFQV 174 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3445667777776555544443
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.03 E-value=0.033 Score=66.79 Aligned_cols=131 Identities=7% Similarity=0.042 Sum_probs=64.2
Q ss_pred CcccccccC-CCchhHHHHHhhhhhHHhhhhh-cccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecC
Q 000538 1 MDAELANSN-YQSGVLYRLVPAVLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTG 78 (1435)
Q Consensus 1 m~~~~~~~~-~~~~~~rkLlaflGPGfLVSIA-YIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTG 78 (1435)
||...+.+. ++.-+.++... +|=|-.+..+ ++.||......-.++-++|- ..-++..++++.+-||+.++=. +|
T Consensus 1 ~~~~~~~~~l~r~L~~~~~~~-i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~--i~gi~~~~v~~s~aEl~s~~P~-aG 76 (456)
T PRK10238 1 MEGQQHGEQLKRGLKNRHIQL-IALGGAIGTGLFLGSASVIQSAGPGIILGYA--IAGFIAFLIMRQLGEMVVEEPV-AG 76 (456)
T ss_pred CCccccchhhhccCcHHHHHH-HHhhccccchHHHhhHHHHHhcCcHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 555444332 33333444332 3333333332 46677666543223333322 1222334444455677777765 45
Q ss_pred CCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHH
Q 000538 79 KDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAA 136 (1435)
Q Consensus 79 K~LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFG-IPLw~GVLITa 136 (1435)
+...-.++.||++..++.....-++.+..-..|..+.+.-++..++ .|.|...++..
T Consensus 77 -g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~ 134 (456)
T PRK10238 77 -SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFF 134 (456)
T ss_pred -CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 6777778889998776543222233333334444444444555553 46666554443
No 31
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.00 E-value=0.039 Score=65.35 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHHHH
Q 000538 50 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL-LDLTMVL 114 (1435)
Q Consensus 50 Y~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAIIa-sDIaEVI 114 (1435)
.+-+..++++++++.++--+.++.|.-||.+-.-.+|..||++-+.+..++-.+..++ .-++-++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~ 94 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIV 94 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888999999999999999999999999999999987665543333333333 3344334
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.98 E-value=0.073 Score=65.09 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=32.8
Q ss_pred HhhhhHHHHHHHHH-----HHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 46 AHFGFDLVALMLVF-----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 46 A~fGY~LLWVLLLA-----tIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
|.+|+.++...+++ .+.++.+.||++...-.+| +...-.++-+|+.+.++
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 46677775444443 3457777888877652345 77778888899877654
No 33
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.97 E-value=0.011 Score=69.01 Aligned_cols=128 Identities=8% Similarity=0.067 Sum_probs=91.2
Q ss_pred hHHHHHhhhhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhee-cCCCHHHHHHhhcCch
Q 000538 14 VLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKW 92 (1435)
Q Consensus 14 ~~rkLlaflGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVV-TGK~LAEicRe~Ygk~ 92 (1435)
..|..++++| -+|.++|---=.+- |-=..||+.=.|-+++++++-.++=...+.+|-. .-++..+..+.-.|++
T Consensus 5 ~~~~~f~~ig--~~vGAGfAsGqEi~---QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~ 79 (349)
T COG3949 5 FMRWAFAFIG--TVVGAGFASGQEIM---QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHH--HhhcccccchHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHH
Confidence 3455666666 55555443322332 2234678888888888888888777777777765 4567888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhc
Q 000538 93 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFA 146 (1435)
Q Consensus 93 ~a~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~ 146 (1435)
+..+.=+++-+..+.+.+-+..|++..++-.+|+|.|+|.+++.....+.++++
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~ 133 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLG 133 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 877766666677777777778888888888899999999777766666666544
No 34
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.85 E-value=0.046 Score=66.12 Aligned_cols=332 Identities=12% Similarity=0.133 Sum_probs=162.4
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 104 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELA 104 (1435)
|+.+=.-+.|+||+.=-..-|.+.|-+.+|.++-..+-++.+=-++.=--..+|.++.+.- ++-||+.+.++++.+-++
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~~~~~~~l~-~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKSGGGIEDLA-SRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-cccCcHHHHHHHHHHHHH
Confidence 4444466899999999999999999999999998888888877776443344555655554 577888888877665554
Q ss_pred HHHH-HHHH--HHHHHHHHHHhhC----ChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHH-HHHHHH
Q 000538 105 VILL-DLTM--VLGIAHGLNLLMG----VELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWI-CTAGII 176 (1435)
Q Consensus 105 IIas-DIaE--VIGtAIALnLLFG----IPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~-~LI~IM 176 (1435)
+--. -+.- ...-.+++.-+++ ++++...++....+++|.+ ...+..| ..| ++.. +|+.++
T Consensus 88 IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~-~p~kivd------~iG-----k~LTP~LL~~l 155 (427)
T PF05525_consen 88 IGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSL-NPSKIVD------RIG-----KFLTPILLILL 155 (427)
T ss_pred HHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHh-chhhHHH------HHH-----HHHHHHHHHHH
Confidence 4111 1111 1111222333344 4555555544444444443 2223334 222 2221 222222
Q ss_pred HHHHHHhHhhhCCCcccc-ccccccccC--CC--hHHHHHHHhcCcchHHHHHHhhHhhhhccccccccchhchhhHHHH
Q 000538 177 LLSYVLGVLISQPEIPLS-VNGMLTKFS--GD--SAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFA 251 (1435)
Q Consensus 177 aLsFV~elfis~Pd~geV-l~GLvP~lp--g~--sl~~AVAILGATIMPHNlYLHSaLVqsR~~~~d~sk~a~r~D~~fs 251 (1435)
++.++.. +.+|..... ..+-...-+ .+ .-|+-|=.+++.+.--. ..++ + +++.... ++...+....+
T Consensus 156 ~ilii~~--i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i-Ii~~-i-~~~g~~~---~k~~~~~~~~a 227 (427)
T PF05525_consen 156 AILIIKG--IFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGII-IINA-I-RQKGYKD---KKEIKKYTIKA 227 (427)
T ss_pred HHHHHHH--HHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHH-HHHH-H-HHhCCCC---HHHHHHHHHHH
Confidence 2222222 223332110 111111101 00 12333333333322211 1111 1 2222211 11222223332
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhccccCCcccccHHHHHHHHHHhhhhcccccCcccccccccchhhhhhhhhhcccchHH
Q 000538 252 -ILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQVFRSPVVP 330 (1435)
Q Consensus 252 -i~~i~lgsFLINlaVViVaAavfygtGi~V~T~qDAa~aLepL~A~~fc~~~~~~Ll~~~~l~s~gl~~a~lLgG~~A~ 330 (1435)
.++. .+.++|-..+.-++|..- +. .....+..+.|..+. ...+ |.++.
T Consensus 228 g~ia~-~lL~~IY~gL~~lGa~~~---~~-~~~~~~g~~lL~~i~-------------------------~~~~-G~~G~ 276 (427)
T PF05525_consen 228 GLIAG-ILLALIYGGLAYLGATSS---GS-FPDDINGAELLSQIA-------------------------NHLF-GSAGQ 276 (427)
T ss_pred HHHHH-HHHHHHHHHHHHHccCCc---cc-ccCCCCHHHHHHHHH-------------------------HHHc-ChhHH
Confidence 2211 223456666666666542 11 011223334444410 0145 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Q 000538 331 FAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPS 410 (1435)
Q Consensus 331 ~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPF 410 (1435)
+++++..+.|.+++++.-+.+..--+++.++ |.+ ++.....++++ +.+++- .| +.+++.++-=+..+.=|.
T Consensus 277 ~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-kis---Y~~~v~i~~i~-S~~ian-~G---l~~Ii~~s~PiL~~iYP~ 347 (427)
T PF05525_consen 277 ILLGIIVFLACLTTAIGLISACAEYFSELFP-KIS---YKVWVIIFTIF-SFIIAN-LG---LDQIIKISVPILMFIYPV 347 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccC---hHHHHHHHHHH-HHHHHH-hC---HHHHHHHHHHHHHHHhHH
Confidence 9999999999999998877776434444444 332 22222122332 222222 34 566776776666677788
Q ss_pred HHHHHHH
Q 000538 411 SVIPLFR 417 (1435)
Q Consensus 411 ALIPLL~ 417 (1435)
+++-++.
T Consensus 348 ~IvLIll 354 (427)
T PF05525_consen 348 AIVLILL 354 (427)
T ss_pred HHHHHHH
Confidence 7766553
No 35
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.81 E-value=0.069 Score=63.67 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=52.3
Q ss_pred hhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHH
Q 000538 28 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQT 101 (1435)
Q Consensus 28 VSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWIma 101 (1435)
+=.-+.|.||+..-..-|.+.|..+.+.++-..+-++.+=-++.---..+| +-.+.+.++|||++..+++.+.
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~g-G~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVG-GGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecC-CCHHHHHHHhChHHHHHHHHHH
Confidence 334589999999999999999988777776666666665555544333455 5667777899999887764443
No 36
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.76 E-value=0.2 Score=60.36 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=21.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000538 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 359 (1435)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGF 359 (1435)
.++++...++.+.++.+.+++...+.++...++..+
T Consensus 289 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ 324 (469)
T PRK11049 289 VGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGL 324 (469)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665444333
No 37
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.75 E-value=0.12 Score=68.09 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000538 329 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 359 (1435)
Q Consensus 329 A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGF 359 (1435)
...+..+|++++.+++.+++.+++..++..+
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~Am 416 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQAL 416 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888998999888888886665433
No 38
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.74 E-value=0.035 Score=66.50 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=51.4
Q ss_pred cccCchHHHHHHhHHhhh---hHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHH
Q 000538 32 YVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVI 106 (1435)
Q Consensus 32 YIDPGNIaTdlqAGA~fG---Y~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAII 106 (1435)
-+...++.+..... .+| .+-++.++++++++.++--+.++.|.-||.+-.-..|..||.+-..+..++-.+..+
T Consensus 27 ~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~i 103 (442)
T TIGR00800 27 AFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAI 103 (442)
T ss_pred hhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHH
Confidence 34444444443333 233 356677888899999999999999999999999999999997666554443333333
No 39
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.65 E-value=0.27 Score=58.79 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~L 97 (1435)
+..++++.+-||+.++=. +| +..+..++.||+++.++.
T Consensus 57 ~~~~~a~~~aEl~s~~P~-~G-g~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 57 LVVFIMRMLGEMAVANPD-TG-SFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 445567777888877654 33 678889999999877653
No 40
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.63 E-value=0.13 Score=61.80 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=54.4
Q ss_pred hhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCC---CHHHHHHhhcCchhHHHHH
Q 000538 22 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGK---DLAQICGEEYDKWTCVFIG 98 (1435)
Q Consensus 22 lGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK---~LAEicRe~Ygk~~a~~LW 98 (1435)
+|=-+++.-..+|+|=+.--.+.+-..=+-.+-.++++-++.++.+++-.|.-.-+++ +..+..++++|+.++++..
T Consensus 12 ~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~ 91 (415)
T COG0814 12 LGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIG 91 (415)
T ss_pred HHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHH
Confidence 3444555566788888777666543222222223344555666666666666555443 7999999999999999877
Q ss_pred HHHHHHHHH
Q 000538 99 VQTELSVIL 107 (1435)
Q Consensus 99 ImaELAIIa 107 (1435)
+...+.+.+
T Consensus 92 ~s~~~~~~~ 100 (415)
T COG0814 92 LSYFFALYG 100 (415)
T ss_pred HHHHHHHHH
Confidence 665555444
No 41
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.63 E-value=0.25 Score=60.17 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=60.7
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 104 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELA 104 (1435)
|+.+=.-+.|+||+.=-..-|.+.|-...|.++-..+-++.+=-++.=--..+|-++.++- ++.||+.+.++++.+-++
T Consensus 14 G~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~-~rv~~~f~~~f~~~i~l~ 92 (439)
T PRK15433 14 GFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLS-TPIGKVAGVLLATVCYLA 92 (439)
T ss_pred HHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-hhcchHHHHHHHHHHHHH
Confidence 6666677999999999999999999999999988888888777776555555664555444 577888887776665554
Q ss_pred H
Q 000538 105 V 105 (1435)
Q Consensus 105 I 105 (1435)
+
T Consensus 93 I 93 (439)
T PRK15433 93 V 93 (439)
T ss_pred H
Confidence 4
No 42
>PRK10249 phenylalanine transporter; Provisional
Probab=97.60 E-value=0.33 Score=58.52 Aligned_cols=72 Identities=8% Similarity=0.053 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTC 131 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFG-IPLw~G 131 (1435)
++.+.++.+-||+.++=. +| +.....++.+|+.+.++.....-++.+..-..|..+.+.-++.+++ .|.|..
T Consensus 66 ~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 138 (458)
T PRK10249 66 IAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIW 138 (458)
T ss_pred HHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHH
Confidence 334455556677766555 56 7788889999997765532222222222334555554444444443 465543
No 43
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.59 E-value=0.34 Score=58.43 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=25.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000538 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 358 (1435)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeG 358 (1435)
++++++..++.++++.+.+++..++.++...++-.
T Consensus 284 ~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a 318 (471)
T PRK11387 284 VGIPYAADIFNFVILTAILSAANSGLYASGRMLWS 318 (471)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45678778888887878787777777777544433
No 44
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.55 E-value=0.0086 Score=70.91 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=52.7
Q ss_pred hhcccCchHHHHHHhHHhhhh---HHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHH
Q 000538 30 IGYVDPGKWAVIIEGGAHFGF---DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVI 106 (1435)
Q Consensus 30 IAYIDPGNIaTdlqAGA~fGY---~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAII 106 (1435)
.+-+-..++.+-... ..+|. +-++.++++++++.++--+.+++|.-||.+-....|..||.+-+.+..++..+..+
T Consensus 20 ~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~i 98 (440)
T PF02133_consen 20 GANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISAI 98 (440)
T ss_dssp HHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHHH
Confidence 333444555555544 44553 45677888899999999999999999999999999999998766654444333333
Q ss_pred H-HHHHHHHH
Q 000538 107 L-LDLTMVLG 115 (1435)
Q Consensus 107 a-sDIaEVIG 115 (1435)
+ +-++-++|
T Consensus 99 gW~av~~~~~ 108 (440)
T PF02133_consen 99 GWFAVNTWLG 108 (440)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3 33444443
No 45
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.50 E-value=0.45 Score=57.49 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 357 (1435)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMe 357 (1435)
|+++..+..++++.+.+++.++...++..++-
T Consensus 279 g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 279 GKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888878887777777754443
No 46
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.46 E-value=0.15 Score=61.87 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCC
Q 000538 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 363 (1435)
Q Consensus 323 lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr 363 (1435)
.+ |.|..++.++.++.-++++.+++.|=++...+-.++.+
T Consensus 329 ~~-g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 329 GL-GSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred Hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35 56888999999999999999999999987766655644
No 47
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.41 E-value=0.55 Score=56.39 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHH
Q 000538 60 NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 60 tIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~L 97 (1435)
.++++.+-||+.++-. +| +.....++.+|+.++++.
T Consensus 56 ~~~a~~~aEl~s~~P~-~G-g~y~y~~~~~G~~~gf~~ 91 (457)
T PRK10580 56 YIIMRALGEMSVHNPA-AS-SFSRYAQENLGPLAGYIT 91 (457)
T ss_pred HHHHHHHHHHHHHcCC-CC-CHHHHHHHHcCcHHHHHH
Confidence 4455667788877654 33 566678888999877553
No 48
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.39 E-value=0.14 Score=62.50 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=68.6
Q ss_pred hhhhHHHHHHHHHHHH-HHHHHHHHhhhheecCCCHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000538 47 HFGFDLVALMLVFNFA-AIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGVQTELSVILLDLTMVLGIAHGLNLLM 124 (1435)
Q Consensus 47 ~fGY~LLWVLLLAtIl-g~llQ~LSARLGVVTGK~LAEicRe~Ygk-~~a~~LWImaELAIIasDIaEVIGtAIALnLLF 124 (1435)
-.||+-+|-.+-.+.- -++.-.+|-+|==.-.-+.++.+.+||.. ..|++..+.+-+.....-++++.|+++-+.+++
T Consensus 71 ~~GYdG~~Y~iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~ 150 (529)
T COG4147 71 ISGYDGLIYSIGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLL 150 (529)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3455555544322211 11223345555555566889999999875 556555555555555567889999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHhcC
Q 000538 125 GVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 125 GIPLw~GVLITaldtflfL~L~s 147 (1435)
|+|..+||++..+..++...++.
T Consensus 151 gv~~~vgv~ig~ilm~~Yvv~GG 173 (529)
T COG4147 151 GVPYHVGVVIGGILMMVYVVLGG 173 (529)
T ss_pred CCCceeehhhHhHHHHHHHHhcc
Confidence 99999999998888888877765
No 49
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.39 E-value=0.35 Score=57.87 Aligned_cols=117 Identities=14% Similarity=0.228 Sum_probs=76.9
Q ss_pred HhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHH----------HHHHHHHHHHhhhheecCCCHHHHHHhhcCc-hhH
Q 000538 26 LLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----------FAAIFCQYLSARIAVVTGKDLAQICGEEYDK-WTC 94 (1435)
Q Consensus 26 fLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAt----------Ilg~llQ~LSARLGVVTGK~LAEicRe~Ygk-~~a 94 (1435)
+..++.|+.+...... -||.|.|.|=|++|-.. +++=-+-.+|-|++.+| +-+..|.||-. ...
T Consensus 48 mt~~aTYisaSSFigG--pgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAlt---I~D~l~~RY~s~fl~ 122 (473)
T COG4145 48 MTFTATYISASSFIGG--PGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALT---INDLLFARYQSRFLV 122 (473)
T ss_pred hHHHHHHHHHhhhcCC--CcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCee---HHHHHHHHhcchHHH
Confidence 3444556665555443 37788888999665332 12223445556666654 77788888754 434
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcC
Q 000538 95 VFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 95 ~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL~L~s 147 (1435)
|+.-+..-+..+..-..+++|.|=-++...|+|.-.|.+++++.+++.-+++.
T Consensus 123 ~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGG 175 (473)
T COG4145 123 WLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGG 175 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcc
Confidence 44344444444555556799999888888899999999999998888877764
No 50
>PRK10746 putative transport protein YifK; Provisional
Probab=97.31 E-value=0.75 Score=55.72 Aligned_cols=73 Identities=8% Similarity=-0.017 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHH
Q 000538 60 NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFL 134 (1435)
Q Consensus 60 tIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFG-IPLw~GVLI 134 (1435)
.++++.+-||+.++=. +| +...-.++.+|+.+.++.....-++-+..-..|+.+.+.-++..++ +|.|...++
T Consensus 57 ~~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~ 130 (461)
T PRK10746 57 FFIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALI 130 (461)
T ss_pred HHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHH
Confidence 3444556777777643 55 6778888888887664431111111122223344444443444443 466554443
No 51
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.28 E-value=0.43 Score=58.16 Aligned_cols=77 Identities=14% Similarity=-0.054 Sum_probs=43.8
Q ss_pred HHhhhhh--cccCchHH-----HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcC-chhHHH
Q 000538 25 VLLISIG--YVDPGKWA-----VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD-KWTCVF 96 (1435)
Q Consensus 25 GfLVSIA--YIDPGNIa-----TdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Yg-k~~a~~ 96 (1435)
||+++++ .+|-||+= +.-..|+.|= |+|++ ....+++.+.-+=-=+|--++++..+..++--+ |++.++
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFl--l~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFL--LPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHH--HHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhh
Confidence 5555544 69999973 4455555542 33322 223334443333334555678888888887765 777777
Q ss_pred HHHHHHHH
Q 000538 97 IGVQTELS 104 (1435)
Q Consensus 97 LWImaELA 104 (1435)
-|+.+..+
T Consensus 90 G~~gv~~~ 97 (439)
T COG0733 90 GWFGVLGG 97 (439)
T ss_pred hhHHHHHH
Confidence 66644333
No 52
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.01 E-value=1.4 Score=53.29 Aligned_cols=32 Identities=3% Similarity=0.092 Sum_probs=18.0
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000538 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVV 355 (1435)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~V 355 (1435)
+|.+++..++.+.++.+.+++.+++.++...+
T Consensus 299 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 330 (482)
T TIGR00907 299 LGNKAGAIFLLCLILVTSFFCAITCMTANSRM 330 (482)
T ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43335555555556666666666666666433
No 53
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.01 E-value=1.3 Score=52.86 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~L 97 (1435)
+..++++.+-||+.++-. +| +...-.++.+|+.++++.
T Consensus 52 ~~~~~a~~~aEl~s~~P~-~G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPT-AG-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 445667778999999875 34 567788899999777653
No 54
>TIGR00909 2A0306 amino acid transporter.
Probab=96.98 E-value=1.3 Score=52.44 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=26.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000538 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 359 (1435)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGF 359 (1435)
.+|+++..+..++++.+.+++..+..++...++..+
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 273 LGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777778888888888888888888776555544
No 55
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.95 E-value=0.91 Score=55.60 Aligned_cols=99 Identities=10% Similarity=0.075 Sum_probs=60.8
Q ss_pred HhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhee--cCCCHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000538 43 EGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFI-GVQTELSVILLDLTMVLGIAHG 119 (1435)
Q Consensus 43 qAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVV--TGK~LAEicRe~Ygk~~a~~L-WImaELAIIasDIaEVIGtAIA 119 (1435)
.+=+..|-..+.+-+++-++.+++-+.-+-+-+. +-.+....+++++|++..++. |..- +.-+..-++|+.++++=
T Consensus 39 ~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW-~~wv~v~~ae~tAi~~y 117 (462)
T COG1113 39 SAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYW-FFWVLVGIAELTAIGIY 117 (462)
T ss_pred hhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3334556666666666666666666666555555 234899999999999876442 1111 11222334555566666
Q ss_pred HHHhh-CChhHHHHHHHHHHHHHH
Q 000538 120 LNLLM-GVELSTCVFLAAADAILF 142 (1435)
Q Consensus 120 LnLLF-GIPLw~GVLITaldtflf 142 (1435)
++.-| ++|.|+.+++.++....+
T Consensus 118 ~~~WfP~vP~Wv~al~~~~l~~~~ 141 (462)
T COG1113 118 LQFWFPDVPQWVFALAAVVLLLAV 141 (462)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHH
Confidence 66667 679999988776544443
No 56
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.94 E-value=1.7 Score=53.02 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
++.+.++.+-||+.++=. +| +.-.-.++.||+.+.++
T Consensus 89 ~~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 89 FSIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 345566677777777653 34 56777788899977654
No 57
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=96.93 E-value=1.3 Score=54.20 Aligned_cols=138 Identities=17% Similarity=0.093 Sum_probs=79.2
Q ss_pred hhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhee----cCCC-----HHHHHHhhcCchhHHHHHHH
Q 000538 30 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV----TGKD-----LAQICGEEYDKWTCVFIGVQ 100 (1435)
Q Consensus 30 IAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVV----TGK~-----LAEicRe~Ygk~~a~~LWIm 100 (1435)
++-+|.|||+--..|=+.-|-.-+..+++..+++..-++.=.-|++. ..++ .+--+.+-++ ++|+..+.
T Consensus 74 a~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~--~r~l~v~F 151 (452)
T COG1115 74 AARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLG--MRWLAVLF 151 (452)
T ss_pred HhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcC--CcHHHHHH
Confidence 45699999998888877777776666677777776666544433332 1111 1111222222 22333333
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHH
Q 000538 101 TELSVIL-----LDLTMVLGIAHGLNLLMGVE-LSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAG 174 (1435)
Q Consensus 101 aELAIIa-----sDIaEVIGtAIALnLLFGIP-Lw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~ 174 (1435)
+ +++++ ..+-+.-.++-+++--||+| +..|+.++++..++++ -|.+++-++...++=
T Consensus 152 A-~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~~VI~----------------GGi~rIa~v~~~vVP 214 (452)
T COG1115 152 A-FALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVALVIF----------------GGIKRIAKVSSKVVP 214 (452)
T ss_pred H-HHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH----------------cchHHHHHHHHHHHH
Confidence 3 22222 12233445667777778996 5566666655444332 466777777777888
Q ss_pred HHHHHHHHhHhh
Q 000538 175 IILLSYVLGVLI 186 (1435)
Q Consensus 175 IMaLsFV~elfi 186 (1435)
+|++.|++..+.
T Consensus 215 fMA~~Yi~~~~~ 226 (452)
T COG1115 215 FMAILYVLVALV 226 (452)
T ss_pred HHHHHHHHHHHH
Confidence 888888765433
No 58
>PRK11021 putative transporter; Provisional
Probab=96.92 E-value=1.5 Score=52.01 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+..+.++.+-||+.++-. +| +.-.-.++.+|+.+.++
T Consensus 44 ~~~~~al~~aEl~s~~P~-aG-G~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 44 LIFPIAIVFARLGRHFPH-AG-GPAHFVGMAFGPRLGRV 80 (410)
T ss_pred HHHHHHHHHHHHHHhCCC-CC-CHHHhHHHHhCchhHHH
Confidence 345555666777777764 45 67778888899877654
No 59
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=96.89 E-value=1.8 Score=52.69 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=59.5
Q ss_pred HHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHH
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 100 (1435)
Q Consensus 25 GfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWIm 100 (1435)
||..=+-+.|+||+.=--..|...|....|..+-..+-++.+=-+..=-....|++.-+.- ++-+||...++-+.
T Consensus 11 GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~-~~i~~~fg~~f~~~ 85 (431)
T COG1114 11 GFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLA-TRIGPWFGVLFAIA 85 (431)
T ss_pred HHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHh-hhccchHHHHHHHH
Confidence 5666667899999999999999999999999888888888777777766777888776666 46688877665443
No 60
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.75 E-value=2.2 Score=51.52 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~L 97 (1435)
++.++++.+-||+.++=. +| +.-.-.++.+|+.++++.
T Consensus 37 ~~~~~al~~aEL~s~~P~-~G-g~y~y~~~~~G~~~gf~~ 74 (446)
T PRK10197 37 LVVMIMRMLAEMAVATPD-TG-SFSTYADKAIGRWAGYTI 74 (446)
T ss_pred HHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHcChHHHHHH
Confidence 334456666777776654 44 688899999999776543
No 61
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=96.71 E-value=2.3 Score=51.44 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 57 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 57 LLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+...++++.+.||+.++-...| +..+-.++.+|+++.++
T Consensus 46 ~~~~~~al~~aeL~s~~P~~gG-G~y~y~~~~fG~~~gf~ 84 (468)
T TIGR03810 46 VGMLALAFSFQNLANKKPELDG-GVYSYAKAGFGPFMGFI 84 (468)
T ss_pred HHHHHHHHHHHHHHhhCCCCCC-ChhhhHHhHcCcHHHHH
Confidence 4456677788888888766554 77888999999977654
No 62
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.71 E-value=2.3 Score=51.42 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=36.3
Q ss_pred HhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHH-----HHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 26 LLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN-----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 26 fLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAt-----Ilg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
++..++-+.-.|+.+ .|.+|...+...+++. +.++.+-||++++=. .| +...-.|+.+|+.+.+.
T Consensus 10 ~~~~~~v~~~~~~~~----~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 10 IMNITAVVSLRGLPA----EAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHhhcchH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 333344445555543 3456665543333332 355566777776543 33 56677888899876654
No 63
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=96.63 E-value=2.6 Score=50.92 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~L 97 (1435)
+..++++.+-||+.++=.. |=......++.+|+.+.++.
T Consensus 48 ~~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~~~gf~~ 86 (478)
T TIGR00913 48 IIYCVMQSLGEMATFYPVV-SGSFATYASRFVDPAFGFAV 86 (478)
T ss_pred HHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCcHHHHHH
Confidence 4455666677888877643 33567778888888776543
No 64
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.58 E-value=2.2 Score=49.51 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHH
Q 000538 58 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 58 LAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~L 97 (1435)
++.+.++++-+++.|. -|+++.|..++.+||+..+++
T Consensus 46 ~~~~~~~~~~~l~~~~---p~~~~~~~~~~~~Gk~~g~~~ 82 (359)
T TIGR00912 46 IIIFLLCLMIKIMSKF---PEKNFSEILSKYLGKILGRLL 82 (359)
T ss_pred HHHHHHHHHHHHHHHC---CCCCHHHHHHHHhhHHHHHHH
Confidence 3344445555555554 378999999999999877653
No 65
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=96.54 E-value=2.8 Score=50.23 Aligned_cols=43 Identities=12% Similarity=-0.038 Sum_probs=27.5
Q ss_pred HHHHH--HHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 52 LVALM--LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 52 LLWVL--LLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+.|++ ++..+.++.+-||+.++=.. | +.-.-.++.||+.+.++
T Consensus 47 l~~li~~v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 47 LAFVIGGLIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 34544 45667777888888887543 3 34445667788876654
No 66
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.44 E-value=3.2 Score=49.80 Aligned_cols=38 Identities=5% Similarity=-0.104 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 57 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 57 LLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+.+.++++.+-||+.++=. +| +.-.-.++.||+.++++
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf~ 88 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGYQ 88 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHHH
Confidence 4566777888888888753 45 67777889999987653
No 67
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.31 E-value=3.4 Score=48.67 Aligned_cols=37 Identities=5% Similarity=-0.017 Sum_probs=27.2
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000538 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 359 (1435)
Q Consensus 323 lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGF 359 (1435)
..+|++...++.++++.+.+.+.+++..+...++..+
T Consensus 266 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 302 (426)
T PF13520_consen 266 AVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM 302 (426)
T ss_dssp HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhcchhhccccc
Confidence 3446788888888888888888888887775554443
No 68
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.82 E-value=7.6 Score=48.43 Aligned_cols=82 Identities=11% Similarity=0.165 Sum_probs=51.6
Q ss_pred cCchHHHHHHhHHhhhhHH-----HHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH-HHHHHHHHHHH
Q 000538 34 DPGKWAVIIEGGAHFGFDL-----VALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF-IGVQTELSVIL 107 (1435)
Q Consensus 34 DPGNIaTdlqAGA~fGY~L-----LWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~-LWImaELAIIa 107 (1435)
|-=|+-+..-++.-+...| +-.+++++++-+++-.+.+|-|..+|-+....+|.-||-+-+.+ ..+=+.+|++=
T Consensus 53 ~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~W 132 (497)
T COG1953 53 MVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVW 132 (497)
T ss_pred hhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3344444444444444333 34566777778888899999999999999999999999644322 22223344444
Q ss_pred HHHHHHHH
Q 000538 108 LDLTMVLG 115 (1435)
Q Consensus 108 sDIaEVIG 115 (1435)
.-+|-.+|
T Consensus 133 yGvqty~G 140 (497)
T COG1953 133 YGVQTYAG 140 (497)
T ss_pred HHHHHHHh
Confidence 45555444
No 69
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=95.58 E-value=6.9 Score=46.25 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=21.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVV 355 (1435)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~V 355 (1435)
|.+...+..++.+.+.+++.+++..+...+
T Consensus 283 g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~ 312 (466)
T COG0531 283 GNWGAIIIAILALLSLFGSLLAWILAVSRV 312 (466)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777433
No 70
>PRK10655 potE putrescine transporter; Provisional
Probab=95.30 E-value=9 Score=45.83 Aligned_cols=35 Identities=9% Similarity=-0.072 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 60 NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 60 tIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
.+.++.+-|+++++=. +| +...-.++.||+.+.++
T Consensus 52 ~~~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf~ 86 (438)
T PRK10655 52 MALAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNFM 86 (438)
T ss_pred HHHHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHHH
Confidence 3346666777766433 34 56777888899976654
No 71
>PLN03074 auxin influx permease; Provisional
Probab=94.74 E-value=15 Score=45.47 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=32.7
Q ss_pred HHhhhhCCC-cCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 355 VLQDFLRLD-IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 418 (1435)
Q Consensus 355 VMeGFLglr-~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALIPLL~f 418 (1435)
++|..++.+ .+.+..+++.|.+.++.+.+++.. .+.+..++.+...+....|-|.+=+++++
T Consensus 336 ~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~--IP~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 336 VWEKAIGVHDTKSICLRALARLPVVVPIWFLAII--FPFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555433 122334567788888777777663 22344555555555554444444444444
No 72
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.48 E-value=0.83 Score=55.09 Aligned_cols=31 Identities=10% Similarity=-0.044 Sum_probs=24.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000538 323 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQ 353 (1435)
Q Consensus 323 lLgG~~A~~IFAIGLLAAGqSSTITgT~AGQ 353 (1435)
.+++++...++.++++.+.+++.....+++.
T Consensus 282 ~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~s 312 (478)
T PF00324_consen 282 YSGGPWLAWIVNAGILISAFSSANASLYAAS 312 (478)
T ss_pred hcccccccceecccchhhhhhhhhhhhcccc
Confidence 3456778888888888888888888777763
No 73
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=94.19 E-value=18 Score=44.09 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 52 LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 52 LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
++...+...++++.+-||+.++=. +| +.-.-.++-+|+.+.++
T Consensus 53 ~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 53 WPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 333344455566677788887753 44 56666777788876554
No 74
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=93.87 E-value=16 Score=42.23 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhee-cCCCHHHHHHhhcCchhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhCCh
Q 000538 55 LMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFIGV------QTELSVILLDLTMVLGIAHGLNLLMGVE 127 (1435)
Q Consensus 55 VLLLAtIlg~llQ~LSARLGVV-TGK~LAEicRe~Ygk~~a~~LWI------maELAIIasDIaEVIGtAIALnLLFGIP 127 (1435)
.++++.++++++-.+..+++-- -|+++.|..++.+||+...++.+ ....+.......+++. ..++-..|
T Consensus 37 ~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~----~~~lp~TP 112 (320)
T PF03845_consen 37 SVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIK----TYLLPETP 112 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcCC
Confidence 3456666666666666666654 79999999999999988765322 2222222233333332 22233568
Q ss_pred hHHHHHHHHHHHHHHH
Q 000538 128 LSTCVFLAAADAILFP 143 (1435)
Q Consensus 128 Lw~GVLITaldtflfL 143 (1435)
.|+-.++..+.++...
T Consensus 113 ~~~i~~~~ll~~~y~a 128 (320)
T PF03845_consen 113 IWVIILLFLLVAAYAA 128 (320)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777666555444
No 75
>PRK09928 choline transport protein BetT; Provisional
Probab=93.80 E-value=13 Score=48.01 Aligned_cols=73 Identities=25% Similarity=0.307 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhHHHHHhhhhCC------CcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Q 000538 341 NQIIAVNWNLSGQVVLQDFLRL------DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIP 414 (1435)
Q Consensus 341 GqSSTITgT~AGQ~VMeGFLgl------r~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALIP 414 (1435)
.+...+|...++.+|+..+-.. +.++|.|.+.-.++++++.++ ++.|.-+..| .+.....|||++|-
T Consensus 419 ~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~L--L~~GGL~aLQ-----t~sii~alPf~~I~ 491 (679)
T PRK09928 419 GLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGM--LMTNGISALQ-----NTTVIMGLPFSFVI 491 (679)
T ss_pred HHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHH--HHhcCHHHHH-----HHHHHHHHHHHHHH
Confidence 3556788889999998877542 455676654443444444432 2334211222 22334678888877
Q ss_pred HHHHhh
Q 000538 415 LFRVAS 420 (1435)
Q Consensus 415 LL~ftS 420 (1435)
++...+
T Consensus 492 ll~~~s 497 (679)
T PRK09928 492 FFVMAG 497 (679)
T ss_pred HHHHHH
Confidence 765544
No 76
>PRK10836 lysine transporter; Provisional
Probab=93.65 E-value=23 Score=43.44 Aligned_cols=32 Identities=6% Similarity=-0.121 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 357 (1435)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMe 357 (1435)
.+++..++.++++.+.+++.....+++..++-
T Consensus 293 ~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~ 324 (489)
T PRK10836 293 LLSAAAVMNAVILTAVLSAGNSGMYASTRMLY 324 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666667777777777754443
No 77
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.64 E-value=5.6 Score=49.99 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=19.7
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000538 423 QIMGVHKISQYHEFLVLITFMGMLGLKLIFM 453 (1435)
Q Consensus 423 ~IMGefrNS~~~nILawli~llIi~LNIyfV 453 (1435)
=.-|++..+++.+...+++++.+++.-+++.
T Consensus 446 f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~ 476 (550)
T KOG1289|consen 446 FRPGPFNLGKFSKPIGIIAVLWVLFMIVILC 476 (550)
T ss_pred cCCCCccccccccchHHHHHHHHHHHHHHHh
Confidence 3457777788888887777555555444443
No 78
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=92.22 E-value=40 Score=42.50 Aligned_cols=33 Identities=3% Similarity=-0.121 Sum_probs=23.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000538 324 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1435)
Q Consensus 324 LgG~~A~~IFAIGLLAAGqSSTITgT~AGQ~VM 356 (1435)
.|..++..+..+|++.+..++.++..++...++
T Consensus 308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888887777777777765443
No 79
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=91.53 E-value=5.7 Score=49.21 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhH
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSG 352 (1435)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AG 352 (1435)
|++-..+|-+.++.+|.+|.+...-.-
T Consensus 344 ~~~~~~lFFl~l~~agl~S~i~~~E~i 370 (523)
T PF00209_consen 344 GRFWAILFFLMLFLAGLTSQISMLEVI 370 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHHHHHHHhhhcCCceece
Confidence 566667888888889998887655443
No 80
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=90.92 E-value=50 Score=42.10 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=27.9
Q ss_pred chHHH---HHHHHHHHHHHHHHHHHHhhHHHHHhhhhC
Q 000538 327 PVVPF---AFVLVLFFSNQIIAVNWNLSGQVVLQDFLR 361 (1435)
Q Consensus 327 ~~A~~---IFAIGLLAAGqSSTITgT~AGQ~VMeGFLg 361 (1435)
.++++ ++.++++.+..++...+.|++..++-.+-+
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~ 352 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAK 352 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHh
Confidence 45666 999999999999999999999776665543
No 81
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=89.31 E-value=4.7 Score=48.64 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=43.3
Q ss_pred cCchHHHHHHhHHhhhhH--HHHHHHHHHHHHHHHHHHHhhhhee--cCCCHHHHHHhhcCchhHHHH
Q 000538 34 DPGKWAVIIEGGAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFI 97 (1435)
Q Consensus 34 DPGNIaTdlqAGA~fGY~--LLWVLLLAtIlg~llQ~LSARLGVV--TGK~LAEicRe~Ygk~~a~~L 97 (1435)
+.|-|.--+.+ +.|||- +||+++-..+++. +|.+.+=..-+ -||++.|+++++.|+..+.++
T Consensus 67 GaGPI~GPi~a-a~~GwlPa~lWI~~G~if~Ga-VHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 67 GAGPIVGPILA-AQFGWLPALLWIVFGCIFAGA-VHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred ccccchHHHHH-HHhcchHHHHHHHHccHHHHH-HHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 33445555655 999996 8888766655554 55554444444 499999999999999877554
No 82
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=88.28 E-value=77 Score=39.41 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=37.5
Q ss_pred HHhhhhCCCcC-----cchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000538 355 VLQDFLRLDIP-----GWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 420 (1435)
Q Consensus 355 VMeGFLglr~~-----~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALIPLL~ftS 420 (1435)
++|...+.+.+ .-..|++.|...++.+++++...-. ...++.+...+....+.+.+-+++++.-
T Consensus 330 ~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~Pf--Fg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 330 VVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPF--FGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccc--cHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555665544 2225678888888888888774221 2345556666655556665555555533
No 83
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=88.02 E-value=89 Score=39.89 Aligned_cols=136 Identities=9% Similarity=0.045 Sum_probs=70.4
Q ss_pred hhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhH----HHH
Q 000538 22 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTC----VFI 97 (1435)
Q Consensus 22 lGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a----~~L 97 (1435)
+|.|++++.+. .+.+.==+|+--+|-++=++++.++ .-+=||+.-+= ++|- ....-.+..++.+. |.-
T Consensus 60 IGTGLfvgsG~----~l~~aGP~g~li~y~i~G~~vy~vm--~sLGEma~~~P-~sGs-F~~ya~rfvdpa~GFa~gWnY 131 (541)
T COG0833 60 IGTGLFVGSGK----ALSQAGPAGLLIAYLIIGIMVYFVM--QSLGELAVFYP-VSGS-FSTYATRFVDPAFGFALGWNY 131 (541)
T ss_pred cccceeeecch----hhhccCcHHHHHHHHHHHHHHHHHH--HHHHHHHhhcC-CCCc-hhhhhhhhcCchHHHHHHHHH
Confidence 78888876553 1111224566777776666555443 34568888888 7772 22222222233332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHH
Q 000538 98 GVQTELSVILLDLTMVLGIAHGLNLLM--GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGI 175 (1435)
Q Consensus 98 WImaELAIIasDIaEVIGtAIALnLLF--GIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~I 175 (1435)
|+. -+..++ .|++.+++-++--+ .+|.|+++++..+..+++=+++- +.| -..|+.+..+=.+
T Consensus 132 w~~-w~v~~~---~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~V----------k~f--GE~Efw~s~iKV~ 195 (541)
T COG0833 132 WLN-WAVTLP---LELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGV----------KGF--GETEFWFSSIKVL 195 (541)
T ss_pred HHH-HHHHhh---HHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcc----------ccc--ceehHHHHHHHHH
Confidence 222 122222 35556777777665 34888888776665555544331 123 3457766554333
Q ss_pred HHHHHH
Q 000538 176 ILLSYV 181 (1435)
Q Consensus 176 MaLsFV 181 (1435)
+.+.|+
T Consensus 196 ~ii~Fi 201 (541)
T COG0833 196 TIIGFI 201 (541)
T ss_pred HHHHHH
Confidence 444443
No 84
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=87.93 E-value=18 Score=46.19 Aligned_cols=113 Identities=11% Similarity=0.184 Sum_probs=67.4
Q ss_pred hhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH----HhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHH
Q 000538 30 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYL----SARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 105 (1435)
Q Consensus 30 IAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~L----SARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAI 105 (1435)
+.++..+++..-...|+.||.+.+|+-+-+.+...+.-++ --|.++. +.-|-.+.+|++..+. +|.+..+-.
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~-l~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRY-LATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchh-hHHHHHHHH
Confidence 4567777788888889999998887766555444443332 2344543 3567777888877443 333332222
Q ss_pred HHHHHHHHH-HHHHHHHHhhCChhHHHHHHHHHHHHHHHHhc
Q 000538 106 ILLDLTMVL-GIAHGLNLLMGVELSTCVFLAAADAILFPFFA 146 (1435)
Q Consensus 106 IasDIaEVI-GtAIALnLLFGIPLw~GVLITaldtflfL~L~ 146 (1435)
+..-+..++ --|+++|-.+|+.++..++++.+.|.+.-.++
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~G 175 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALG 175 (585)
T ss_pred HHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhc
Confidence 222222211 35788888888887766666655555554443
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=87.08 E-value=1e+02 Score=39.53 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=37.3
Q ss_pred HhHHhhhh--HHHHHHHHHHHHHHHHHHHHhhhhee--cCCCHHHHHHhhcCchhHHH
Q 000538 43 EGGAHFGF--DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 43 qAGA~fGY--~LLWVLLLAtIlg~llQ~LSARLGVV--TGK~LAEicRe~Ygk~~a~~ 96 (1435)
..+|+||| .+||+++- ++++-.+|.+-+=.--+ -||++.|+.+++.|+..+.+
T Consensus 75 vlAAq~G~Lp~~LWIl~G-~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 75 ALAAQYGWLPAFLWILLG-CVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred HHHHHhcCcHHHHHHHHh-hhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45789996 68998654 45555556554433333 49999999999999977654
No 86
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=85.96 E-value=98 Score=38.22 Aligned_cols=66 Identities=8% Similarity=-0.083 Sum_probs=37.1
Q ss_pred hhhhhcccCchHHHHHH-hHHhhhhHHHHHHHHH----HHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 27 LISIGYVDPGKWAVIIE-GGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 27 LVSIAYIDPGNIaTdlq-AGA~fGY~LLWVLLLA----tIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+...+-++-+++..... +|. -.++|.++.+ .+.++.+-||+.++=-..| +.-.-.++-+|+.+.++
T Consensus 17 ~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf~ 87 (496)
T PRK15238 17 MIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAFI 87 (496)
T ss_pred HHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHHH
Confidence 33334445566654332 332 2344544444 3355667777776543334 77788888899877754
No 87
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=84.68 E-value=1e+02 Score=37.34 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHH
Q 000538 57 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 57 LLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~ 96 (1435)
+.+.++++.+.||+.++=. +| +...-.++ +|+.+.++
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 3456777888999998875 55 66666776 78766554
No 88
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=80.75 E-value=96 Score=38.92 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=9.5
Q ss_pred ccCCCCCCCCcccCCCCC
Q 000538 675 SSKDAPESTSALMSDGPA 692 (1435)
Q Consensus 675 ~~K~~~~~~ps~~sdGP~ 692 (1435)
.+|+-+...--++++||+
T Consensus 421 ~~~~~~~~~~~~~~~~~~ 438 (460)
T PRK13108 421 APIPDPAKPDELAVAGPG 438 (460)
T ss_pred CCcCCCCCCCCCccCCCC
Confidence 344444444446777775
No 89
>PRK15015 carbon starvation protein A; Provisional
Probab=79.11 E-value=2.2e+02 Score=37.46 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=41.5
Q ss_pred chHHHHHHhHHhhhh--HHHHHHHHHHHHHHHHHHHHhhhhee--cCCCHHHHHHhhcCchhHHH
Q 000538 36 GKWAVIIEGGAHFGF--DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 96 (1435)
Q Consensus 36 GNIaTdlqAGA~fGY--~LLWVLLLAtIlg~llQ~LSARLGVV--TGK~LAEicRe~Ygk~~a~~ 96 (1435)
|-++--..| ++||| .+||+++-. +++-.+|.+.+=..-+ -||++.|+++++.|+..+.+
T Consensus 100 GPivGPvlA-a~~GwlP~~LWIl~G~-vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 100 GPLVGPVLA-AQMGYLPGMIWLLAGV-VLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred CccHHHHHH-HHHcchHHHHHHHHcc-eeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 334444444 48999 488986654 4555677777766655 49999999999999876644
No 90
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=77.23 E-value=1.8e+02 Score=35.41 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=15.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000538 244 LCHDHFFAILCIFSGIYMVNYVLMNSAANLF 274 (1435)
Q Consensus 244 ~r~D~~fsi~~i~lgsFLINlaVViVaAavf 274 (1435)
..+|..+. .+++++.++.-.+.+..+
T Consensus 119 ~~wd~~~~-----igs~~~~~~~Gvalg~~~ 144 (346)
T COG1294 119 KFWDWAFF-----IGSFLPPLLLGVALGNLL 144 (346)
T ss_pred hHHHHHHH-----hhhHHHHHHHHHHHHHHh
Confidence 34565544 256667666666666665
No 91
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=76.88 E-value=39 Score=40.75 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=54.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSG-AEGVYQLLIFTQVMV 404 (1435)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G-~e~~~qLLI~sQVI~ 404 (1435)
|++.+-++=+.++..-++++++..-++....++.+| +|.|.-.+++ +..+.++.+.+ .+++..+ +
T Consensus 77 ~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--lP~wiGali~-----i~~v~i~lfl~~vegi~tv-------n 142 (349)
T COG3949 77 GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--LPYWIGALII-----ILLVLILLFLGRVEGIITV-------N 142 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--ccHHHHHHHH-----HHHHHHHHHHhcccceeee-------h
Confidence 577778888888888899888888777778888888 5678654332 12222334445 5555543 4
Q ss_pred HHHHHHHHHHHHHHhh
Q 000538 405 AIMLPSSVIPLFRVAS 420 (1435)
Q Consensus 405 SLqLPFALIPLL~ftS 420 (1435)
++.+||..+.++..++
T Consensus 143 ~iI~P~LIi~l~~v~~ 158 (349)
T COG3949 143 GIITPFLIIILVLVTL 158 (349)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 6788998888665554
No 92
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=76.66 E-value=60 Score=42.05 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=48.8
Q ss_pred hhCChhH-----HHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhCCCccccccc
Q 000538 123 LMGVELS-----TCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNG 197 (1435)
Q Consensus 123 LFGIPLw-----~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~IMaLsFV~elfis~Pd~geVl~G 197 (1435)
+||+|.. ..|+-.++.+|++-++.+ |+++ +--..+..++.-++ .+++++.+.+++..|=..-+-++
T Consensus 205 ~fGipv~~~~Y~~sViPiil~v~~~s~iEk--~l~K------~iP~~l~~i~~P~l-tlli~~pl~l~viGPig~~i~~~ 275 (627)
T PRK09824 205 FLGIPVTLLNYSSSVIPIIFSAWLCSILER--RLNA------WLPSAIKNFFTPLL-CLMVIVPLTFLLIGPLATWLSEL 275 (627)
T ss_pred ecceeeeecCCccchHHHHHHHHHHHHHHH--HHHH------HHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHH
Confidence 3576543 346666666777776654 4442 11122344443332 34555556666667754433333
Q ss_pred cc---cccCCChHHHHHHHhcCcchHHHHH-HhhHhh
Q 000538 198 ML---TKFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 230 (1435)
Q Consensus 198 Lv---P~lpg~sl~~AVAILGATIMPHNlY-LHSaLV 230 (1435)
+- -.+-.-.-.++.+++|+.--|--++ +|-+++
T Consensus 276 l~~~i~~l~~~~~~i~g~i~g~~~~~lV~~G~H~~l~ 312 (627)
T PRK09824 276 LAAGYQWLYQAVPAFAGAVMGAFWQVFVIFGLHWGLV 312 (627)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHhccchhhH
Confidence 31 1111112234567777765554444 677664
No 93
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=76.24 E-value=2e+02 Score=38.19 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 000538 329 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 360 (1435)
Q Consensus 329 A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFL 360 (1435)
-+++..+|+++++++|+|.+..++..+++..-
T Consensus 371 ~p~fi~iGi~sttlfss~s~liGasrvL~ala 402 (945)
T KOG1288|consen 371 HPPFILIGILSTTLFSSMSGLIGASRVLEALA 402 (945)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 34677799999999999999999998887654
No 94
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=75.85 E-value=2.4e+02 Score=36.20 Aligned_cols=69 Identities=25% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHHhhhh---CCCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000538 345 AVNWNLSGQVVLQDFL---RLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 420 (1435)
Q Consensus 345 TITgT~AGQ~VMeGFL---glr~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALIPLL~ftS 420 (1435)
.+|..+++.++++-.- +.+.++|.|..--.+++++++++ ++.|. +..| =++.-...|||+++-++...+
T Consensus 419 fiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~l--L~~gg--l~aL---qt~~ii~alPF~~vll~~~~s 490 (537)
T COG1292 419 FVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVL--LLIGG--LEAL---QTAAIITALPFSLVLLVMMFS 490 (537)
T ss_pred HhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH--HHhCC--HHHH---HHHHHHHHccHHHHHHHHHHH
Confidence 4667788888876654 24466777665444555666544 33443 1111 122334678999887765544
No 95
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=71.00 E-value=0.29 Score=56.72 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=36.6
Q ss_pred hhhhhHHhhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhee----cCCCHHHHHHhhcCchhHH
Q 000538 20 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV----TGKDLAQICGEEYDKWTCV 95 (1435)
Q Consensus 20 aflGPGfLVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVV----TGK~LAEicRe~Ygk~~a~ 95 (1435)
..+|+|.|.-= -+..++|-..| ++++++.+.+..+-.+.+.--.-.+ ...+..+++++-+|+++.+
T Consensus 15 ~~iG~G~L~lP--------~af~~~G~~~g--~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 84 (409)
T PF01490_consen 15 SIIGAGILSLP--------YAFAQSGWVLG--IILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPKGKW 84 (409)
T ss_pred HHHhHHHHHHH--------HHHHHhhhhhh--hHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 34777776422 12234443333 4444444444444444443332222 4667888889999987766
Q ss_pred HH
Q 000538 96 FI 97 (1435)
Q Consensus 96 ~L 97 (1435)
+.
T Consensus 85 ~~ 86 (409)
T PF01490_consen 85 FV 86 (409)
T ss_pred cc
Confidence 53
No 96
>PLN00151 potassium transporter; Provisional
Probab=70.54 E-value=3.6e+02 Score=36.46 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=12.6
Q ss_pred cchHHhhhccceeccc
Q 000538 743 ITQEARAKKLDLVLGV 758 (1435)
Q Consensus 743 ~t~~a~~~~~~~~lg~ 758 (1435)
.-++||.+..=+++|=
T Consensus 786 ~l~~a~e~Gv~yilG~ 801 (852)
T PLN00151 786 FIREAKESGVVYLLGH 801 (852)
T ss_pred HHHHHHHcCcEEEecc
Confidence 4578888888888883
No 97
>PLN00149 potassium transporter; Provisional
Probab=69.94 E-value=3.9e+02 Score=35.95 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=12.4
Q ss_pred cchHHhhhccceecc
Q 000538 743 ITQEARAKKLDLVLG 757 (1435)
Q Consensus 743 ~t~~a~~~~~~~~lg 757 (1435)
.-++||.++.=.++|
T Consensus 713 ~L~~A~eaGVvYIlG 727 (779)
T PLN00149 713 ELMEAREAGMAYILG 727 (779)
T ss_pred HHHHHHHcCcEEEec
Confidence 467888888888888
No 98
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=68.69 E-value=92 Score=37.27 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhC
Q 000538 375 IISIVPALYCVWTSG 389 (1435)
Q Consensus 375 lIAIIPALiValf~G 389 (1435)
...++|.+++..+..
T Consensus 133 ~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 133 IWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHhc
Confidence 345677777666554
No 99
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=67.19 E-value=1.1e+02 Score=38.49 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=8.3
Q ss_pred cCCCCCCcccccc
Q 000538 507 RNNAPDWSWEFQR 519 (1435)
Q Consensus 507 ~~~~~~~~~~~~~ 519 (1435)
..|...|-|.+=.
T Consensus 482 ~~Edy~WwWrSF~ 494 (521)
T PF02990_consen 482 CAEDYRWWWRSFL 494 (521)
T ss_pred hccccceeeeeeh
Confidence 3556788886643
No 100
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=63.68 E-value=4e+02 Score=33.83 Aligned_cols=40 Identities=18% Similarity=-0.046 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Q 000538 96 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAA 136 (1435)
Q Consensus 96 ~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITa 136 (1435)
.+|+.-.++.++.-|+.|.-.-.... +.+=|.+.+.+.++
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a 53 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAA 53 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Confidence 46777777777777774443222222 23557777765443
No 101
>PRK09950 putative transporter; Provisional
Probab=63.23 E-value=4.2e+02 Score=33.91 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhCC------CcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Q 000538 339 FSNQIIAVNWNLSGQVVLQDFLRL------DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSV 412 (1435)
Q Consensus 339 AAGqSSTITgT~AGQ~VMeGFLgl------r~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFAL 412 (1435)
...+...+|...++.+++..+-.. +.++|.|..--.++++++..+ ++.|. ++.. +=.+.....+||.+
T Consensus 410 vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~L--l~~gG-~l~~---lQ~~~ii~alP~~~ 483 (506)
T PRK09950 410 GIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSI--LFTGA-SLDT---MKTTVVLTALPFLV 483 (506)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHH--HHhCC-cHHH---HHHHHHHHHHHHHH
Confidence 333556677788888888776532 345565543333344444432 23332 1221 11233346789888
Q ss_pred HHHHHHhh
Q 000538 413 IPLFRVAS 420 (1435)
Q Consensus 413 IPLL~ftS 420 (1435)
+-++...+
T Consensus 484 i~~l~~~s 491 (506)
T PRK09950 484 ILLIKVYG 491 (506)
T ss_pred HHHHHHHH
Confidence 87776554
No 102
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=63.05 E-value=58 Score=36.34 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccccCC-CchHHHHHHHHHHHHHHHHHHHH
Q 000538 402 VMVAIMLPSSVIPLFRVASSRQIMGVH-KISQYHEFLVLITFMGMLGLKLI 451 (1435)
Q Consensus 402 VI~SLqLPFALIPLL~ftSsR~IMGef-rNS~~~nILawli~llIi~LNIy 451 (1435)
++.+++|||-.+-+.+-.. =++|..- .+...+-++..+..++++++|-.
T Consensus 87 ~iAs~llP~PsLVIaYCl~-mqi~~~~~~~~~gMsIvcv~~Si~ti~~~~~ 136 (189)
T PF05313_consen 87 IIASLLLPFPSLVIAYCLS-MQIYNPGANNNVGMSIVCVIMSIITIIVNSV 136 (189)
T ss_pred HHHHHHcCccHHHHHHHHH-heeecCCCcceehhHHHHHHHHHHHHHHHhh
Confidence 5678999995555444433 3344333 33444555555555555544433
No 103
>PTZ00206 amino acid transporter; Provisional
Probab=62.54 E-value=3.9e+02 Score=33.27 Aligned_cols=21 Identities=5% Similarity=0.319 Sum_probs=15.5
Q ss_pred CCHHHHHHhhcCchhHHHHHH
Q 000538 79 KDLAQICGEEYDKWTCVFIGV 99 (1435)
Q Consensus 79 K~LAEicRe~Ygk~~a~~LWI 99 (1435)
++..|+.+.-+|++..++.-+
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~ 141 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAA 141 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHH
Confidence 478888888889887765433
No 104
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=59.45 E-value=5e+02 Score=33.49 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 394 YQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMI 457 (1435)
Q Consensus 394 ~qLLI~sQVI~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~LNIyfVv~~~ 457 (1435)
...+.+.---.++.+|+.++-++. ..++ -+.+.|++.+=.+..++++++.++++...+
T Consensus 326 ~g~~~l~~~gLG~~~Plll~~~~~----~~~l--pk~g~wm~~~k~~~G~~ll~~~~~ll~~~~ 383 (571)
T PRK00293 326 LGGLTLYLLALGMGLPLILITTFG----NKLL--PKSGPWMNQVKTAFGFVLLALPVFLLERVL 383 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----Hhhc--ccCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444434455667877776652 2233 267888888887788888888888776443
No 105
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=58.41 E-value=4.5e+02 Score=32.68 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=35.6
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchh
Q 000538 40 VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWT 93 (1435)
Q Consensus 40 TdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~ 93 (1435)
+-.++|-.+|.-|+-...+.+...+.++.-+++.+-.. ..++.+...+|+..
T Consensus 30 afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 30 AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGKLG 81 (411)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCCCc
Confidence 44567766676666666666777776666665555544 88888888888765
No 106
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=55.72 E-value=49 Score=35.71 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=6.1
Q ss_pred HHHHHHhhCCh
Q 000538 117 AHGLNLLMGVE 127 (1435)
Q Consensus 117 AIALnLLFGIP 127 (1435)
+.++-+|||..
T Consensus 114 ~~~fa~lfgg~ 124 (193)
T PF06738_consen 114 SAAFALLFGGS 124 (193)
T ss_pred HHHHHHHHCCC
Confidence 33455567754
No 107
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=55.59 E-value=5.8e+02 Score=33.06 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=47.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCcCcchHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHH
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEG--VYQLLIFTQVM 403 (1435)
Q Consensus 326 G~~A~~IFAIGLLAAGqSSTITgT~AGQ~VMeGFLglr~~~w~RrLiTRlIAIIPALiValf~G~e~--~~qLLI~sQVI 403 (1435)
.++..++++..+-+..|||+-+..+--.+..+|.+..+.... ..+-.-+...+|+++.++-.+... ..--+.+.+++
T Consensus 173 ~~~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~glis~~~~~a-lvLGaNlGt~i~a~laa~~~~~~arr~a~~~ll~~~i 251 (533)
T COG1283 173 DPIVALLIGALLTALIQSSLAAIGILLSLTSQGLISLEAALA-LVLGANLGTTITAVLAALGASAAARRVALGNLLFNLI 251 (533)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHH-HHHHHhhhchhHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 344555666666677788877777666666677655432211 111111223345554333222110 12234456667
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000538 404 VAIMLPSSVIPLFRVAS 420 (1435)
Q Consensus 404 ~SLqLPFALIPLL~ftS 420 (1435)
..+.++..+-|+..+.+
T Consensus 252 G~li~lp~~~~~~~~~~ 268 (533)
T COG1283 252 GVLIFLPVIHLLATFAS 268 (533)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 66665555566666655
No 108
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=55.57 E-value=5.6e+02 Score=32.87 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhHHHHHhhhhC------CCcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Q 000538 340 SNQIIAVNWNLSGQVVLQDFLR------LDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVI 413 (1435)
Q Consensus 340 AGqSSTITgT~AGQ~VMeGFLg------lr~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALI 413 (1435)
..+...+|...++.+++..+-. .+.++|.|..--.++++++.++ ++.|.-+..| .+.....+||.++
T Consensus 414 l~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~L--l~~GGl~~lQ-----t~sii~alPf~~i 486 (504)
T PRK03356 414 LCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVL--LALGGLKPIQ-----TAIIAGGCPLFFV 486 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHH--HHhcCHHHHH-----HHHHHHHHHHHHH
Confidence 3355667778888777776643 2344555443333333444332 2333211222 2233467899998
Q ss_pred HHHHHhh
Q 000538 414 PLFRVAS 420 (1435)
Q Consensus 414 PLL~ftS 420 (1435)
-++...+
T Consensus 487 ~~l~~~s 493 (504)
T PRK03356 487 NIMVTLS 493 (504)
T ss_pred HHHHHHH
Confidence 8776655
No 109
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=53.48 E-value=7.4e+02 Score=33.67 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=17.2
Q ss_pred HHHHhcCcchHHHHHHhhHhhhh
Q 000538 210 IMSLLGASMMPHNFYLHSSIVRR 232 (1435)
Q Consensus 210 AVAILGATIMPHNlYLHSaLVqs 232 (1435)
..-++||++.|-.-.+.+++++.
T Consensus 132 ~ALLLGAILAPTDPVLAssV~kg 154 (810)
T TIGR00844 132 ASLLMGACITATDPVLAQSVVSG 154 (810)
T ss_pred HHHHHHhhhcCCcHHHHHHHHhc
Confidence 34578999998877788887753
No 110
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=53.28 E-value=5.8e+02 Score=32.38 Aligned_cols=76 Identities=7% Similarity=0.058 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccc-cCCCchHHHHHHHHHHHHHHH
Q 000538 369 HHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHKISQYHEFLVLITFMGML 446 (1435)
Q Consensus 369 RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALIPLL~ftSsR~IM-GefrNS~~~nILawli~llIi 446 (1435)
.....|...++-+.++|+. .+++..++-+..++....|-++.=|++.+.-..... |.++-.++.+++..++.++.+
T Consensus 362 ~~~~~R~~lVllt~~iA~~--iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~ 438 (449)
T KOG1304|consen 362 LEYALRVFLVLLTFLIAVA--VPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGF 438 (449)
T ss_pred HHHHHHHHHHHHHHHHHHH--CCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHH
Confidence 3445667766666666664 445566665666666666666666666554443333 667667777755444443333
No 111
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=51.77 E-value=6.2e+02 Score=32.26 Aligned_cols=73 Identities=23% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhHHHHHhhhhCC---CcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 341 NQIIAVNWNLSGQVVLQDFLRL---DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFR 417 (1435)
Q Consensus 341 GqSSTITgT~AGQ~VMeGFLgl---r~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFALIPLL~ 417 (1435)
.....+|...++-+++..+-.. +.++|.|...-.++++++.++ .+..|.+ ..|- +.....+||+++-++.
T Consensus 402 ~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~l-l~~ggl~-~lq~-----~~ii~~lP~~~v~~~~ 474 (485)
T PF02028_consen 402 IFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVL-LLIGGLD-ALQS-----ASIIGGLPFSFVMLLM 474 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHH-HHHHSSH-HHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHH-HHhCCHH-HHHH-----HHHHHHHHHHHHHHHH
Confidence 3455667777777777666543 344555444333344444433 3344543 2332 2334668888877765
Q ss_pred Hhh
Q 000538 418 VAS 420 (1435)
Q Consensus 418 ftS 420 (1435)
..+
T Consensus 475 ~~~ 477 (485)
T PF02028_consen 475 CIS 477 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 112
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=47.24 E-value=1.2e+02 Score=35.29 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHH
Q 000538 113 VLGIAHGLNLLMGVELSTCVFLAAADAILFP 143 (1435)
Q Consensus 113 VIGtAIALnLLFGIPLw~GVLITaldtflfL 143 (1435)
.++++.++...|+.|.|+.+++.++..++++
T Consensus 30 ~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~ 60 (301)
T PF14362_consen 30 GLSGGYALYTVFGGPVWAAIPFGLVWGLVIF 60 (301)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3455666666777777777766655444444
No 113
>PRK03612 spermidine synthase; Provisional
Probab=45.87 E-value=3.2e+02 Score=34.67 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=34.2
Q ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhee-cCCCHHHHHHhhc
Q 000538 40 VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEY 89 (1435)
Q Consensus 40 TdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVV-TGK~LAEicRe~Y 89 (1435)
..+.+.+..+|.++|.=+++.+++-.+...+.=|++. .|..+.-.+-.+.
T Consensus 23 ~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~ 73 (521)
T PRK03612 23 VFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYL 73 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455788899999999999877777666666655554 4555555554444
No 114
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=44.84 E-value=7.3e+02 Score=31.58 Aligned_cols=98 Identities=13% Similarity=0.109 Sum_probs=45.9
Q ss_pred hCChhH-----HHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhCCCcccccccc
Q 000538 124 MGVELS-----TCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGM 198 (1435)
Q Consensus 124 FGIPLw-----~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~IMaLsFV~elfis~Pd~geVl~GL 198 (1435)
||+|.+ ..|+-.++.++++.++.+ ++++ +--..++.++.=+ ..+++++.+.+++..|-..-+-.++
T Consensus 208 ~Gipi~~~~Y~ssViPiil~v~~~s~vek--~~~K------~~P~~l~~i~~P~-ltlli~~pl~l~viGPig~~i~~~i 278 (472)
T PRK09796 208 ALIPVTAVKYTYTVIPALVMTWCLSYIER--WVDR------ITPAVTKNFLKPM-LIVLIAAPLAILLIGPIGIWIGSAI 278 (472)
T ss_pred cCceeeecCCCcchHHHHHHHHHHHHHHH--HHHH------hCHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466543 345555556666666654 3331 1112234444332 3455666666677777543332332
Q ss_pred c---cccCCChHHHHHHHhcCcchHHHHH-HhhHhh
Q 000538 199 L---TKFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 230 (1435)
Q Consensus 199 v---P~lpg~sl~~AVAILGATIMPHNlY-LHSaLV 230 (1435)
. -.+-.-.-.+..+++|+.--|-.++ +|-+++
T Consensus 279 ~~~i~~l~~~~~~i~g~i~g~~~~~lV~~G~H~~~~ 314 (472)
T PRK09796 279 SALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFT 314 (472)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhccchhhh
Confidence 1 1111112234567777654443333 666654
No 115
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=43.70 E-value=7.9e+02 Score=31.16 Aligned_cols=76 Identities=21% Similarity=0.255 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhC--C----CcCcchHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Q 000538 339 FSNQIIAVNWNLSGQVVLQDFLR--L----DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSV 412 (1435)
Q Consensus 339 AAGqSSTITgT~AGQ~VMeGFLg--l----r~~~w~RrLiTRlIAIIPALiValf~G~e~~~qLLI~sQVI~SLqLPFAL 412 (1435)
...+...+|...++.+++..+.. . +.++|.|..--..+..++..+ ++.|.. +.. +=.+.....+||.+
T Consensus 364 il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~l--l~~gG~-l~~---lQ~~~ii~alP~~~ 437 (453)
T TIGR00842 364 IVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVL--LFSGGS-LAA---LQTTAIIAALPFSL 437 (453)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHH--HHhcCc-HHH---HHHHHHHHHHHHHH
Confidence 33455667778888888876632 2 244555543333344444432 233321 211 11233346789988
Q ss_pred HHHHHHhh
Q 000538 413 IPLFRVAS 420 (1435)
Q Consensus 413 IPLL~ftS 420 (1435)
+-++...+
T Consensus 438 i~~l~~~s 445 (453)
T TIGR00842 438 VMLVVMAS 445 (453)
T ss_pred HHHHHHHH
Confidence 88776544
No 116
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=42.75 E-value=5.4e+02 Score=30.04 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 000538 160 QENYKAKLLWICTAGIILL 178 (1435)
Q Consensus 160 yG~RKLE~l~~~LI~IMaL 178 (1435)
||+.|+|.+..++.+++.+
T Consensus 73 yG~~r~E~l~~l~~~~~l~ 91 (299)
T PRK09509 73 FGHGKAESLAALAQSMFIS 91 (299)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 5778899988766554443
No 117
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=42.67 E-value=5.1e+02 Score=29.63 Aligned_cols=82 Identities=12% Similarity=0.194 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHH
Q 000538 403 MVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVF 482 (1435)
Q Consensus 403 I~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~LNIyfVv~~~fg~s~w~~~l~~~~~~~v~~~~~v~ 482 (1435)
+.++.--|+...+.++..+..--...|.+.| +.++.+.....+.+.++++ +.+.+. .-++.++-+.+
T Consensus 132 l~a~vgGfamy~my~y~yr~~ad~sqr~~~~-K~~lv~~~sm~lWi~v~i~-t~~lPt-----------slN~~L~pi~l 198 (226)
T COG4858 132 LTAVVGGFAMYIMYYYAYRMRADNSQRPGTW-KYLLVAVLSMLLWIAVMIA-TVFLPT-----------SLNPQLPPIAL 198 (226)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcccccCCchH-HHHHHHHHHHHHHHHHHHH-HhhCCC-----------cCCcCCchHHH
Confidence 3444455556566666553332223455555 5555444455555555533 333331 11223444555
Q ss_pred HHHHHHHHHHHHHHH
Q 000538 483 LITTFTSLCLMLWLA 497 (1435)
Q Consensus 483 ~i~~~~yl~f~lyL~ 497 (1435)
.++..+.+++=.||=
T Consensus 199 ~IiGav~lalRfylk 213 (226)
T COG4858 199 TIIGAVILALRFYLK 213 (226)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666667777777763
No 118
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=42.09 E-value=1.1e+03 Score=32.26 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh
Q 000538 49 GFDLVALMLVFNFAAIFCQYLSARIA 74 (1435)
Q Consensus 49 GY~LLWVLLLAtIlg~llQ~LSARLG 74 (1435)
-+.++|-++++.++|+++=++++++-
T Consensus 205 l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 205 CVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888777766653
No 119
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=41.23 E-value=6.3e+02 Score=35.29 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 404 VAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMV 454 (1435)
Q Consensus 404 ~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~LNIyfVv 454 (1435)
..+.+|.+++.+|+++ .+.---.-+.+.+.+.+.|++.++++.+.+.++.
T Consensus 115 ~~a~~~~~~~~~L~~~-R~~F~~~~~~~s~~~~~~~l~~~~~~~~~~~~~l 164 (1094)
T PRK02983 115 IGFAVHVVAIVLLVLA-RREFPARVRRGALRKALAVLVGGLAVGILVGWGL 164 (1094)
T ss_pred HHHHHHHHHHHHHHHH-HhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666554 3332222234666777778777777655444443
No 120
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=40.59 E-value=8.4e+02 Score=31.05 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhCCCccccccccc---cccC-CCh
Q 000538 131 CVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGML---TKFS-GDS 206 (1435)
Q Consensus 131 GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~IMaLsFV~elfis~Pd~geVl~GLv---P~lp-g~s 206 (1435)
.|+-.++.+|+.-++.+ ++++ .--+.++.++.=+++ ++++..+.+++..|-...+-.++- -.+- ...
T Consensus 231 sViP~Il~v~~~s~iek--~l~K------~~P~~l~~i~~Pllt-lli~~~l~l~viGPig~~i~~~i~~~i~~L~~~~~ 301 (473)
T PRK11007 231 QVIPALLAGLALGFIET--RLKR------IVPDYLYLVVVPVCS-LILAVFLAHALIGPFGRMIGDGVAFAVKALMTGSF 301 (473)
T ss_pred CcHHHHHHHHHHHHHHH--HHHH------hCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 44444555566666654 3332 111224444443333 334445555566676544333331 1222 123
Q ss_pred HHHHHHHhcCcchHHHHH-HhhHhh
Q 000538 207 AFSIMSLLGASMMPHNFY-LHSSIV 230 (1435)
Q Consensus 207 l~~AVAILGATIMPHNlY-LHSaLV 230 (1435)
..+..+++|++--|-.++ +|-+++
T Consensus 302 ~~ig~~i~g~~~~~lV~~G~H~~~~ 326 (473)
T PRK11007 302 APIGAALFGFLYAPLVITGVHQTTL 326 (473)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHH
Confidence 344556666543333333 676654
No 121
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=39.57 E-value=1.4e+02 Score=34.60 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=14.4
Q ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHHHh
Q 000538 117 AHGLNLLMGVELSTCVFLAAADAILFPFF 145 (1435)
Q Consensus 117 AIALnLLFGIPLw~GVLITaldtflfL~L 145 (1435)
+.++.+||| --|.-+++++++.++...+
T Consensus 136 ~~~f~~l~g-G~w~d~~iaf~~~~~~~~~ 163 (250)
T COG2966 136 AAAFALLFG-GGWLDFLIAFFAGLLGFLL 163 (250)
T ss_pred HHHHHHHcC-CchHHHHHHHHHHHHHHHH
Confidence 344556777 3344445555555544443
No 122
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.35 E-value=1.1e+03 Score=33.24 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHh
Q 000538 376 ISIVPALYCVWTS 388 (1435)
Q Consensus 376 IAIIPALiValf~ 388 (1435)
..++|.+.+..++
T Consensus 607 ~~~~pl~~~~~~~ 619 (1109)
T PRK10929 607 GLIVPLIMALITF 619 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 4566776654444
No 123
>CHL00204 ycf1 Ycf1; Provisional
Probab=38.93 E-value=1.3e+02 Score=43.18 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHH-----H---HHHHHHHhhHHHHHhhhh---CCCcCcchHHHHHHHHHHHHHHHHHHHh---------C
Q 000538 330 PFAFVLVLFFSN-----Q---IIAVNWNLSGQVVLQDFL---RLDIPGWLHHATIRIISIVPALYCVWTS---------G 389 (1435)
Q Consensus 330 ~~IFAIGLLAAG-----q---SSTITgT~AGQ~VMeGFL---glr~~~w~RrLiTRlIAIIPALiValf~---------G 389 (1435)
.++|.+-.+... - .|+.||-..||.+|=--. -++...++-+.+| +.++|-+++-+|+ |
T Consensus 33 SylfllRa~vmee~~eGtekkvsAtTGfItGQL~mFiSIYYaPLhlaLgRPHtIT--vL~lPYllFhffw~n~K~ff~y~ 110 (1832)
T CHL00204 33 SYLFLLRARVMEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTIT--VLALPYLLFHFFWNNHKHFFDYG 110 (1832)
T ss_pred HHHHHHHHHHhcccccccccceeeeehHHHHHHHHHHHHHHhHHHHHHcCchhhH--HHHHHHHHHHHHHhcCCCccccC
Confidence 477777655542 1 267789999998773221 0111112224444 3456877764332 1
Q ss_pred ch------h-----HHHHHHHHHHHHHHHHHHHHHH
Q 000538 390 AE------G-----VYQLLIFTQVMVAIMLPSSVIP 414 (1435)
Q Consensus 390 ~e------~-----~~qLLI~sQVI~SLqLPFALIP 414 (1435)
.. + +.--..+.|.++-++||..++.
T Consensus 111 stt~nSmrn~~iq~vFlnnlifQl~N~~iLpss~La 146 (1832)
T CHL00204 111 STTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLA 146 (1832)
T ss_pred CCccccccchhHHHHHHhhHHHHHhhHhhcccHHHH
Confidence 10 0 0111234588888888887754
No 124
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=38.14 E-value=5.9e+02 Score=32.15 Aligned_cols=63 Identities=8% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHH
Q 000538 81 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFP 143 (1435)
Q Consensus 81 LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFGIPLw~GVLITaldtflfL 143 (1435)
|.......+|++..+++.+.+.+|+..+-++.+.+.|-=++-++.++....++++.+.++++-
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 556688889999999999999999999999988888887777767777677776666666554
No 125
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=37.85 E-value=4.2e+02 Score=34.10 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHH----HHHHhhCcccccC
Q 000538 401 QVMVAIMLPSSVIP----LFRVASSRQIMGV 427 (1435)
Q Consensus 401 QVI~SLqLPFALIP----LL~ftSsR~IMGe 427 (1435)
++++-..||+++.- +..|.+-.+-|-.
T Consensus 338 ~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~ 368 (518)
T KOG2568|consen 338 LLILFAALPLAILDAAFIYWIFISLAKTLKK 368 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667776632 3345555555553
No 126
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=37.47 E-value=7.3e+02 Score=31.23 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHH
Q 000538 81 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILFP 143 (1435)
Q Consensus 81 LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVIGtAIALnLLFG-IPLw~GVLITaldtflfL 143 (1435)
|.++.+..+|+.-.+++.+.+.+|+..+-++=+...|-=++-+++ ++....+.++.+..+++-
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 667777888988888888888999988888866666666776776 566677766666666554
No 127
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.21 E-value=5.3e+02 Score=28.73 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhCccccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 405 AIMLPSSVIPLFRVASSRQIMG-VHKISQYHEFLVLITFMGMLGLKLIFMVEMI 457 (1435)
Q Consensus 405 SLqLPFALIPLL~ftSsR~IMG-efrNS~~~nILawli~llIi~LNIyfVv~~~ 457 (1435)
++...++++-+..+.... +. ..|.+.|..+ .+.+.++++.+-++.+...+
T Consensus 120 ~i~~G~~~~~~~~~i~~~--~~~~~r~~~~k~~-~~~~~~~~~w~~~~~~~~~l 170 (206)
T PF06570_consen 120 SIVGGLVFYFIFKYIYPY--KKKKKRPSWWKYI-LISVLAMVLWIVIFVLTSFL 170 (206)
T ss_pred HHHHHHHHHHHHHHHhcc--cccccccHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 333444444444444432 22 2344444434 33333344444444444443
No 128
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=36.92 E-value=7.3e+02 Score=28.87 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=14.3
Q ss_pred hCC-hhHHHHHHHHHHHHHHHHhc
Q 000538 124 MGV-ELSTCVFLAAADAILFPFFA 146 (1435)
Q Consensus 124 FGI-PLw~GVLITaldtflfL~L~ 146 (1435)
-|. |.+..++...+.+++-+++.
T Consensus 46 ~G~~~~~v~~i~~~~~~~vtl~lv 69 (244)
T PF07907_consen 46 NGYNPILVTIIAAILITAVTLFLV 69 (244)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 477 66776666666665555554
No 129
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.78 E-value=1.3e+02 Score=42.24 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=15.7
Q ss_pred CccCC--CcccchHHHHHHHHHH
Q 000538 1352 AVKPA--KGKCTTAAMLLDLIKD 1372 (1435)
Q Consensus 1352 ~~~p~--~g~~tta~~~l~~ikd 1372 (1435)
..+|. +|.|++-..|-++++.
T Consensus 1237 ~~~p~RvqgafvsD~Ei~~vv~~ 1259 (1355)
T PRK10263 1237 STLPVRVHGAFVRDQEVHAVVQD 1259 (1355)
T ss_pred CCceeEEEeccCCHHHHHHHHHH
Confidence 34554 6889998888888775
No 130
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=34.85 E-value=7.3e+02 Score=28.45 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=17.2
Q ss_pred hHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000538 37 KWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLS 70 (1435)
Q Consensus 37 NIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LS 70 (1435)
++..-+.-|+.+.-...|.+.++.++==+.+.++
T Consensus 184 s~~eGl~ig~~~~~~~~~~~~~ai~~Hk~~e~~~ 217 (317)
T PF02535_consen 184 SFFEGLAIGAAFSSDSGWSLFIAIILHKIPEGFA 217 (317)
T ss_pred cchhhhhhhcchhhhhHHHHHHHHHHhHhHHHhh
Confidence 3444455555555555555555555444444443
No 131
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=33.92 E-value=1.4e+03 Score=31.22 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=18.5
Q ss_pred hCcccccCCCchHHHHHHHHHHHHHHHHHH
Q 000538 420 SSRQIMGVHKISQYHEFLVLITFMGMLGLK 449 (1435)
Q Consensus 420 SsR~IMGefrNS~~~nILawli~llIi~LN 449 (1435)
+..+--|.+-.....+++..+.+.=++.+.
T Consensus 654 ~~~es~G~~w~~al~qiivGl~l~qv~l~g 683 (827)
T COG5594 654 HSPESGGGYWPRALFQIIVGLYLFQVCLLG 683 (827)
T ss_pred CCcccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 345555667677777777666655555554
No 132
>PRK03557 zinc transporter ZitB; Provisional
Probab=33.67 E-value=5e+02 Score=30.68 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 000538 160 QENYKAKLLWICTAGIILL 178 (1435)
Q Consensus 160 yG~RKLE~l~~~LI~IMaL 178 (1435)
||+.|+|.+..++.+++.+
T Consensus 81 yG~~r~E~l~al~~~~~l~ 99 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIALV 99 (312)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6778999988766554433
No 133
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=33.60 E-value=9.7e+02 Score=29.28 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=20.7
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 000538 82 AQICGEEYDKWTCVFIGVQTELSVILLDL----TMVLGIAHGLNLL 123 (1435)
Q Consensus 82 AEicRe~Ygk~~a~~LWImaELAIIasDI----aEVIGtAIALnLL 123 (1435)
.|+.-+--|..+.+++-+.+.+|-..+-. ..++|.|||..++
T Consensus 199 ~ei~~r~~p~~~~l~vAl~aG~AGalsl~~~~s~aLvGVaIAvaLv 244 (325)
T TIGR00341 199 PQILSRTEVSPVSEILAVLAGIAGILSLSSGILESLAGVAISASLL 244 (325)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhh
Confidence 34443333445544444444444333322 2477888887654
No 134
>PLN00150 potassium ion transporter family protein; Provisional
Probab=32.16 E-value=1.5e+03 Score=30.93 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=12.8
Q ss_pred cchHHhhhccceeccc
Q 000538 743 ITQEARAKKLDLVLGV 758 (1435)
Q Consensus 743 ~t~~a~~~~~~~~lg~ 758 (1435)
.-++||.++.=.++|=
T Consensus 713 ~L~~A~eaGVvYIlG~ 728 (779)
T PLN00150 713 FLNKCKEAGVVYILGN 728 (779)
T ss_pred HHHHHHHcCcEEEecc
Confidence 4678899998888883
No 135
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=31.98 E-value=3.6e+02 Score=33.72 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=40.7
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHH
Q 000538 44 GGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 100 (1435)
Q Consensus 44 AGA~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWIm 100 (1435)
.+-.|...|+-++.+|-.+++....+|+. ||.++...+..-+|...-+++.+.
T Consensus 95 ~~~vF~lsll~iiPLA~~l~~ateqls~~----tg~tvGgllNAtfGnaiElii~il 147 (441)
T KOG1397|consen 95 KGWVFLLSLLGIIPLAERLGFATEQLSAY----TGPTVGGLLNATFGNAIELIIYIL 147 (441)
T ss_pred chHHHHHHHhhhhhHHHHHHHHHHHHHhh----cCCcHHHHHhhhhccHHHHHHHHH
Confidence 45667777777777777777777766655 999999999999998776665444
No 136
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=31.65 E-value=5.4e+02 Score=31.65 Aligned_cols=69 Identities=9% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhCC-CcCcchHHHHHHHHHHHHHHHHH------------HHhCchhHHHHHHHHHH
Q 000538 336 VLFFSNQIIAVNWNLSGQVVLQDFLRL-DIPGWLHHATIRIISIVPALYCV------------WTSGAEGVYQLLIFTQV 402 (1435)
Q Consensus 336 GLLAAGqSSTITgT~AGQ~VMeGFLgl-r~~~w~RrLiTRlIAIIPALiVa------------lf~G~e~~~qLLI~sQV 402 (1435)
+++++.++|.+.+.| .|..++. +.+-|.|.+-.-.+.++.+++.. +|.|-+..+.++++.|.
T Consensus 187 avl~~c~~SgfAgvY-----fEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a 261 (345)
T KOG2234|consen 187 AVLVACFLSGFAGVY-----FEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNA 261 (345)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHh
Confidence 344555666555554 3444432 45678887655566666666555 45566667888999999
Q ss_pred HHHHHHH
Q 000538 403 MVAIMLP 409 (1435)
Q Consensus 403 I~SLqLP 409 (1435)
++++..-
T Consensus 262 ~gGLlvs 268 (345)
T KOG2234|consen 262 VGGLLVS 268 (345)
T ss_pred ccchhHH
Confidence 9998643
No 137
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=31.62 E-value=1.6e+03 Score=31.34 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=16.1
Q ss_pred ChHHHHHHHh--cCcchHHHHHHhh
Q 000538 205 DSAFSIMSLL--GASMMPHNFYLHS 227 (1435)
Q Consensus 205 ~sl~~AVAIL--GATIMPHNlYLHS 227 (1435)
+++.+++|++ ||+||--|.|=|=
T Consensus 392 GGlAIaiG~~VD~AIV~vEN~~r~L 416 (1027)
T COG3696 392 GGLAIAIGAMVDAAIVVVENAHRRL 416 (1027)
T ss_pred cchheeeeeeecceEEeehhHHHHh
Confidence 4555666655 7888999987554
No 138
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=31.19 E-value=9.1e+02 Score=28.25 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 000538 397 LIFTQVMVAIMLPSSVIPLFRVAS 420 (1435)
Q Consensus 397 LI~sQVI~SLqLPFALIPLL~ftS 420 (1435)
..+..+.+++.+...+...+.+..
T Consensus 116 ~~l~~i~q~~F~~~Ll~FwL~~~~ 139 (298)
T PF06664_consen 116 LLLDDIFQSIFYAYLLLFWLVFFD 139 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788887777777666654
No 139
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=30.96 E-value=31 Score=39.32 Aligned_cols=32 Identities=44% Similarity=0.548 Sum_probs=27.1
Q ss_pred cccchHHHHHHHHHHHHHHhhccC---------CCCccccc
Q 000538 1358 GKCTTAAMLLDLIKDVENAISCRK---------GRTGTAAG 1389 (1435)
Q Consensus 1358 g~~tta~~~l~~ikdve~ais~rk---------gr~gtaag 1389 (1435)
|.+-|-+.++|.||-||+|.+++| |||||-++
T Consensus 126 g~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liA 166 (225)
T KOG1720|consen 126 GSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIA 166 (225)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHH
Confidence 455677889999999999998876 99999765
No 140
>PRK11469 hypothetical protein; Provisional
Probab=30.77 E-value=5.5e+02 Score=28.60 Aligned_cols=23 Identities=4% Similarity=0.241 Sum_probs=17.1
Q ss_pred hCChhHHHHHHHHHHHHHHHHhc
Q 000538 124 MGVELSTCVFLAAADAILFPFFA 146 (1435)
Q Consensus 124 FGIPLw~GVLITaldtflfL~L~ 146 (1435)
.|.|.+..++++++.++++.+.+
T Consensus 129 ~g~~~~~~~~~ig~~s~~~~~~G 151 (188)
T PRK11469 129 LQVNIIATALAIGCATLIMSTLG 151 (188)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 37777877777778788777665
No 141
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=30.25 E-value=8e+02 Score=28.68 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhCcc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000538 408 LPSSVIPLFRVASSRQ-IMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIF 458 (1435)
Q Consensus 408 LPFALIPLL~ftSsR~-IMGefrNS~~~nILawli~llIi~LNIyfVv~~~f 458 (1435)
.-++.+..+++++++. ---.|-.+++..+.+.+..++++++.++.+++.+.
T Consensus 52 ~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~ 103 (299)
T PRK09509 52 ASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQ 103 (299)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555554322 12234455666777777777777777777766653
No 142
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=30.18 E-value=2.8e+02 Score=30.37 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=16.9
Q ss_pred CCCccccccccccccCCChHHHH
Q 000538 188 QPEIPLSVNGMLTKFSGDSAFSI 210 (1435)
Q Consensus 188 ~Pd~geVl~GLvP~lpg~sl~~A 210 (1435)
.|...-.+.|++|-+|+...+.+
T Consensus 80 ~p~~v~~vpaIiPlVPG~~ay~a 102 (156)
T COG3610 80 TPAKVFTVPAIIPLVPGGLAYQA 102 (156)
T ss_pred CChhhhecchhhhcCCcHHHHHH
Confidence 35445556788999999888774
No 143
>PRK11281 hypothetical protein; Provisional
Probab=29.95 E-value=1.5e+03 Score=32.07 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q 000538 375 IISIVPALYCVWTS 388 (1435)
Q Consensus 375 lIAIIPALiValf~ 388 (1435)
...++|.+++..++
T Consensus 627 ~~~~~pl~~~~~~~ 640 (1113)
T PRK11281 627 SLALLPLLFWSVVA 640 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566777664443
No 144
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=29.93 E-value=5.1e+02 Score=30.32 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 000538 56 MLVFNFAAIFCQYLSARI 73 (1435)
Q Consensus 56 LLLAtIlg~llQ~LSARL 73 (1435)
++.-.+|-+++-.+++|+
T Consensus 9 fl~N~~md~~lL~~t~~~ 26 (293)
T PF03419_consen 9 FLVNFLMDYFLLWLTARL 26 (293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455666666666664
No 145
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=29.83 E-value=3.8e+02 Score=30.14 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=17.4
Q ss_pred CChhHHHHHHHHHHHHHHHHhcC
Q 000538 125 GVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 125 GIPLw~GVLITaldtflfL~L~s 147 (1435)
|.+.+..+++.++.++++.+.+-
T Consensus 153 g~~~~~~~~~igivs~i~~~~G~ 175 (206)
T TIGR02840 153 GLNPLATSILVAVMSFIFVSLGL 175 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888888876663
No 146
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.79 E-value=18 Score=42.63 Aligned_cols=126 Identities=10% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHhHH---hhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 000538 38 WAVIIEGGA---HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVL 114 (1435)
Q Consensus 38 IaTdlqAGA---~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELAIIasDIaEVI 114 (1435)
|.+++..+| -+-|.++.++++.+|| +++++.=-....+.-|++.++++.+.+=..-
T Consensus 43 imsd~t~~a~~vl~sfAvvliiIIiIIm---------------------lF~RrLLCPLGlLCiilimi~lLv~~L~tLt 101 (381)
T PF05297_consen 43 IMSDLTQGALTVLYSFAVVLIIIIIIIM---------------------LFKRRLLCPLGLLCIILIMIVLLVSMLWTLT 101 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHH---------------------HHHHhhcCcchHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhhCCCcccc
Q 000538 115 GIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGIILLSYVLGVLISQPEIPLS 194 (1435)
Q Consensus 115 GtAIALnLLFGIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l~~~LI~IMaLsFV~elfis~Pd~geV 194 (1435)
|-++ +.|+=+..-+++.++.+|+.+++.+ .||...-..+..||.++.++.|++.+++.+-.|-.+
T Consensus 102 GQ~L----F~Gi~~l~l~~lLaL~vW~Ym~lLr-----------~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~ 166 (381)
T PF05297_consen 102 GQTL----FVGIVILFLCCLLALGVWFYMWLLR-----------ELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTI 166 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccc
Q 000538 195 VNGML 199 (1435)
Q Consensus 195 l~GLv 199 (1435)
+--++
T Consensus 167 L~dL~ 171 (381)
T PF05297_consen 167 LVDLY 171 (381)
T ss_dssp -----
T ss_pred HHHHH
No 147
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=29.50 E-value=1.4e+03 Score=29.96 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=43.8
Q ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 381 ALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVE 455 (1435)
Q Consensus 381 ALiValf~G~e~~~qLLI~sQVI~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~LNIyfVv~ 455 (1435)
+++.+.-.| +.+.++..+.-.-.+|.+|+.++-++- + +-+ -|.++|++.+=-+...++++..++++--
T Consensus 315 aL~Yiaqsg-~~~~g~~~l~al~LGMg~Plllv~~f~--~-~~L---Pk~G~WM~~vK~~fGFvlLa~aiwLl~~ 382 (569)
T COG4232 315 ALLYIAQSG-NALLGGLALYALGLGMGLPLLLIGVFG--N-RLL---PKPGPWMNTVKQAFGFVLLATAIWLLWR 382 (569)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhcccchhhheecc--c-ccC---CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344 236677777777778888888877665 2 211 3788898888777767777776666643
No 148
>PF13722 DUF4161: C-terminal domain on CstA (DUF4161)
Probab=29.20 E-value=5.2e+02 Score=27.40 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhC
Q 000538 335 LVLFFSNQIIAVNWNLSGQVVLQDFLR 361 (1435)
Q Consensus 335 IGLLAAGqSSTITgT~AGQ~VMeGFLg 361 (1435)
++.-+-..+|.=|++-.+.++++++++
T Consensus 13 l~v~~f~lTtlDTa~Rl~R~~~~E~~~ 39 (127)
T PF13722_consen 13 LFVAAFALTTLDTATRLARYIIQELFG 39 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334467888999999999999999
No 149
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=28.00 E-value=7e+02 Score=30.01 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=30.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHhhhCCCccccccccc-cccCCChHHHHHHHhcCcchHHHHH-HhhH
Q 000538 160 QENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGML-TKFSGDSAFSIMSLLGASMMPHNFY-LHSS 228 (1435)
Q Consensus 160 yG~RKLE~l~~~LI~IMaLsFV~elfis~Pd~geVl~GLv-P~lpg~sl~~AVAILGATIMPHNlY-LHSa 228 (1435)
||++|+|.+.+++-+++.++...-.+ | |.+.-++ |+-.....++.+|++|=++---..| +|..
T Consensus 84 fGy~R~eiLaa~~nav~Li~~s~~I~-----~-EAi~R~~~P~~i~~~~ml~va~~GL~vN~~~a~ll~~~ 148 (296)
T COG1230 84 FGYKRLEILAAFLNALLLIVVSLLIL-----W-EAIQRLLAPPPIHYSGMLVVAIIGLVVNLVSALLLHKG 148 (296)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHhhCC
Confidence 56688888876653333222211111 1 3333344 5432335666777777655433333 4443
No 150
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=27.44 E-value=5.5e+02 Score=29.21 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccc-cCCC
Q 000538 401 QVMVAIMLPSSVIPLFRVASSRQIM-GVHK 429 (1435)
Q Consensus 401 QVI~SLqLPFALIPLL~ftSsR~IM-Gefr 429 (1435)
|.-..+.+|..+.-+-.+..+++-. |.|+
T Consensus 44 n~w~~~~lP~~iaii~~~~~~~E~~~~~~k 73 (241)
T TIGR03732 44 NWWYVIFLPGMIALICALLHKKEKKASNYR 73 (241)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 3444568998887777666444444 5554
No 151
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=26.84 E-value=6e+02 Score=30.03 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhh
Q 000538 60 NFAAIFCQYLSARI 73 (1435)
Q Consensus 60 tIlg~llQ~LSARL 73 (1435)
.+|-+++-.+++|+
T Consensus 13 f~~d~~LL~~t~~~ 26 (288)
T TIGR02854 13 FIIDYFLLYLTART 26 (288)
T ss_pred HHHHHHHHHHHHHH
Confidence 34446666666663
No 152
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=26.52 E-value=3.1e+02 Score=26.82 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhhC
Q 000538 96 FIGVQTELSVIL--LDLTMVLGIAHGLNLLMG 125 (1435)
Q Consensus 96 ~LWImaELAIIa--sDIaEVIGtAIALnLLFG 125 (1435)
.+|.+..++|++ .-+++|+|.+.|..-++|
T Consensus 3 YlW~FL~lsIlcVSgYigQVlg~~savSsf~g 34 (80)
T PF10810_consen 3 YLWTFLALSILCVSGYIGQVLGVASAVSSFFG 34 (80)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 578777777665 578999999998876544
No 153
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=26.18 E-value=2.6e+02 Score=35.51 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhhheecCCCHHHHHHhhcCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCChhHHHHH
Q 000538 56 MLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS-VILLDLTMVLGIAHGLNLLMGVELSTCVF 133 (1435)
Q Consensus 56 LLLAtIlg~llQ~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWImaELA-IIasDIaEVIGtAIALnLLFGIPLw~GVL 133 (1435)
+++.+++++=+.+.|. .-++..|+.|.+||+..-.++.+.+-.. ++.+.|- ..|....++-+.|......++
T Consensus 98 Il~FtVlAie~Kr~AP-----nAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVtaML-L~gGSavisalTGmn~vAa~F 170 (667)
T KOG2348|consen 98 ILLFTVLAIEVKRKAP-----NAHTILEIVKARFGQASHGVFLFYALATNILVTAML-LLGGSAVISALTGMNTVAACF 170 (667)
T ss_pred hHHHHHHHHhhhhcCC-----CcchhhhhhHhhcCcccceEEEhhhhhhhHHHHHHH-HhCchhhhhhhccchhhhhhh
Confidence 4455555555555443 3567999999999985432221221111 1111111 234455556666665554443
No 154
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=26.09 E-value=1.1e+03 Score=27.52 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccc-----CCCCccchhHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 000538 441 TFMGMLGLKLIFMVEMIFGNSDWVGNLRW-----NSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRN 508 (1435)
Q Consensus 441 i~llIi~LNIyfVv~~~fg~s~w~~~l~~-----~~~~~v~~~~~v~~i~~~~yl~f~lyL~~~pl~s~s~~~ 508 (1435)
..+++.+++++|+-..+..|=-.+.+-|. +.-+++. .|++....+..-+.|++|+.+++.++..+.+
T Consensus 161 l~~~~lg~~~lfinrrLGtNYlylsk~P~~~sildvlgpwp-~Yivs~v~ilca~~f~lyllfr~~kk~~~~~ 232 (236)
T COG5522 161 LVAISLGIMCLFINRRLGTNYLYLSKEPESASILDVLGPWP-FYIVSEVLILCAVWFLLYLLFRKLKKTYRPA 232 (236)
T ss_pred HHHHHHHHHHHHHHHHhcCceeEeecCCCchhHHHHhcCcc-HHHHHHHHHHHHHHHHHHHhccccccccCcc
Confidence 34556666777775554322122222221 1112333 3444444444457788999999999876543
No 155
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.91 E-value=1.5e+03 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000538 392 GVYQLLIFTQVMVAIMLPSSVIPLFRVA 419 (1435)
Q Consensus 392 ~~~qLLI~sQVI~SLqLPFALIPLL~ft 419 (1435)
+...++++...+.++..+.....+..+.
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3578899999999998888775544443
No 156
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=24.98 E-value=1.6e+03 Score=29.21 Aligned_cols=26 Identities=0% Similarity=-0.155 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000538 435 EFLVLITFMGMLGLKLIFMVEMIFGN 460 (1435)
Q Consensus 435 nILawli~llIi~LNIyfVv~~~fg~ 460 (1435)
....|++...++..+...+.-++..+
T Consensus 134 ~~~g~l~~~~~~~~~~~~l~~f~~~~ 159 (538)
T COG2898 134 ISPGWLAAFIVALAAANWLGGFAYAD 159 (538)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34467777777777766666555443
No 157
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=24.69 E-value=1.6e+03 Score=29.06 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=48.1
Q ss_pred HHHHHhhhhhHHhhhhhc------ccCchHHHHHHhHHhhh--hHHHHHHHHHHHHHHHHHHHHhhhheecCCCHHHHHH
Q 000538 15 LYRLVPAVLPVLLISIGY------VDPGKWAVIIEGGAHFG--FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICG 86 (1435)
Q Consensus 15 ~rkLlaflGPGfLVSIAY------IDPGNIaTdlqAGA~fG--Y~LLWVLLLAtIlg~llQ~LSARLGVVTGK~LAEicR 86 (1435)
..-++..+-+|++.++-- .+|=.-.+-+.+..... ..-+=.+.+++++.-++|.++..+-+ ...+
T Consensus 51 ~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~~~~~~tllaGv~~i~~G~lRL------G~li- 123 (554)
T COG0659 51 EAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLALAFLATLLAGVFQILLGLLRL------GRLI- 123 (554)
T ss_pred HHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhh-
Confidence 345666777777766532 33333333333332220 22222346667777888888765433 1122
Q ss_pred hhcCchhHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000538 87 EEYDKWTCVFIGVQTELS--VILLDLTMVLGIAH 118 (1435)
Q Consensus 87 e~Ygk~~a~~LWImaELA--IIasDIaEVIGtAI 118 (1435)
+..|+. ++.+++..++ ++..++.++.|...
T Consensus 124 ~fip~p--Vl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 124 RFIPRP--VLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred hhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 233433 3455666555 44467777776444
No 158
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=24.61 E-value=7.5e+02 Score=29.78 Aligned_cols=28 Identities=18% Similarity=0.089 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhheecCCCHHHHHHhhc
Q 000538 62 AAIFCQYLSARIAVVTGKDLAQICGEEY 89 (1435)
Q Consensus 62 lg~llQ~LSARLGVVTGK~LAEicRe~Y 89 (1435)
+...++.-+.-+..-|...+.+-.|+..
T Consensus 168 v~~~~~~GA~~l~~kt~g~l~~rar~~a 195 (328)
T PF02322_consen 168 VALFALHGAVFLALKTEGELRERARRWA 195 (328)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4445566677777778888888777553
No 159
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=23.89 E-value=1.5e+03 Score=29.08 Aligned_cols=18 Identities=33% Similarity=0.480 Sum_probs=14.1
Q ss_pred hHHHHHHhhHhhhhcccc
Q 000538 219 MPHNFYLHSSIVRRHQGQ 236 (1435)
Q Consensus 219 MPHNlYLHSaLVqsR~~~ 236 (1435)
-|||-|-||..+.+|...
T Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (477)
T PRK12821 250 QPHNAYSLSGFFHRRYKH 267 (477)
T ss_pred Cccchhhhhhhhhhhhhh
Confidence 388889999999877653
No 160
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.20 E-value=9.5e+02 Score=31.51 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000538 434 HEFLVLITFMGMLGLKLIFMVEMI 457 (1435)
Q Consensus 434 ~nILawli~llIi~LNIyfVv~~~ 457 (1435)
..+++.+.-...+++-++|+++.+
T Consensus 488 ~ili~GilPFg~ifIELfFI~~Si 511 (628)
T KOG1278|consen 488 SILIAGILPFGAIFIELFFILSSI 511 (628)
T ss_pred HHHhhcccchHHHHHHHHHHHHHH
Confidence 344444445556666777776554
No 161
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=22.94 E-value=1.2e+03 Score=27.86 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=37.7
Q ss_pred hHHHHHHhHHhhhhHHHHHHHHHHHHHHHH-HHHHhhhheecCCCHHHHHHhhcCchhHHHHHHH
Q 000538 37 KWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 100 (1435)
Q Consensus 37 NIaTdlqAGA~fGY~LLWVLLLAtIlg~ll-Q~LSARLGVVTGK~LAEicRe~Ygk~~a~~LWIm 100 (1435)
.|...+..=..+.-..+|++.+..+++.++ -..+.|+.+...+.-.++.| ..|-.-..+.+.+
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~i~ntir~~v~~r~~ei~im~-~~GAt~~~I~~~f 229 (309)
T PRK11026 166 SWFARLAALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFSRRDTINVMK-LIGATDGFILRPF 229 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHH
Confidence 566555554444444566555555554444 55688999988888888876 4564434444433
No 162
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=22.47 E-value=3.6e+02 Score=35.14 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=11.2
Q ss_pred hCChhH-----HHHHHHHHHHHHHHHhc
Q 000538 124 MGVELS-----TCVFLAAADAILFPFFA 146 (1435)
Q Consensus 124 FGIPLw-----~GVLITaldtflfL~L~ 146 (1435)
||+|.. .+++..++.+++.-++.
T Consensus 198 lGi~v~~~~y~~gvip~Il~~~l~~~ie 225 (610)
T TIGR01995 198 FGIPVTLMSYSSSVIPVILAVWLMSYVE 225 (610)
T ss_pred cCcceeccCCcccHHHHHHHHHHHHHHH
Confidence 566543 34444444455554444
No 163
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=22.21 E-value=1.4e+03 Score=27.48 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000538 245 CHDHFFAILCIFSGIYMVNYVLMNSAANLF 274 (1435)
Q Consensus 245 r~D~~fsi~~i~lgsFLINlaVViVaAavf 274 (1435)
.+|..+.. ++++..++.=++.+..+
T Consensus 113 ~wd~~~~~-----gSll~~~~~G~~~g~~~ 137 (328)
T PF02322_consen 113 FWDWVFFI-----GSLLPPFLLGVALGNLV 137 (328)
T ss_pred HHHHHHHH-----hHHHHHHHHHHHHHHHH
Confidence 45665543 34555555555555554
No 164
>PRK11715 inner membrane protein; Provisional
Probab=21.89 E-value=1.5e+03 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=31.0
Q ss_pred hhhhhcccCchHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Q 000538 27 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAV 75 (1435)
Q Consensus 27 LVSIAYIDPGNIaTdlqAGA~fGY~LLWVLLLAtIlg~llQ~LSARLGV 75 (1435)
-+++.++||=+--+-+.--.+||. | ++..+++++++.|+..++-+
T Consensus 285 ~~~V~~~~PVd~Y~~~~RA~KYgi--L--FI~LTF~~fFlfE~~~~~~i 329 (436)
T PRK11715 285 AFGVSLIDPVDQYQKTERAVKYAI--L--FIALTFAAFFLFELLKKLRI 329 (436)
T ss_pred eeEEEEeccccHHHHHHHHHhHHH--H--HHHHHHHHHHHHHHhcCcee
Confidence 356778999998888888888774 2 33446667777666655544
No 165
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=21.64 E-value=8.6e+02 Score=29.65 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCchHHHHHHHHHHHHHHHHH
Q 000538 377 SIVPALYCVWTSGA-EGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGL 448 (1435)
Q Consensus 377 AIIPALiValf~G~-e~~~qLLI~sQVI~SLqLPFALIPLL~ftSsR~IMGefrNS~~~nILawli~llIi~L 448 (1435)
.++|.+.-. +.|. -+..-.-.+.|+++.+++||++--+++-...+-++ +..+....+.-...++++.+
T Consensus 141 f~tPllv~l-~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~---~~~~~l~~vs~~~illIv~~ 209 (319)
T COG0385 141 FLTPLLVGL-LAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVE---RLKKALPPVSVLSILLIVYA 209 (319)
T ss_pred HHHHHHHHH-HhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhcchhhHHHHHHHHHH
Confidence 345766543 3342 22233444678999999999998887654433222 22233444444444444443
No 166
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=21.58 E-value=98 Score=34.75 Aligned_cols=49 Identities=29% Similarity=0.454 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHHHHh-----------hccCCCCcc-ccccccc----CCCcccHHHHHHHHHh
Q 000538 1361 TTAAMLLDLIKDVENAI-----------SCRKGRTGT-AAGDVAF----PKGKENLASVLKRYRR 1409 (1435)
Q Consensus 1361 tta~~~l~~ikdve~ai-----------s~rkgr~gt-aagdvaf----pkgkenlasvlkrykr 1409 (1435)
.+...++++|+.|+... +...||||| +|-|.+. -+++-|+.+++|+.++
T Consensus 173 ~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~ 237 (258)
T smart00194 173 ESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRS 237 (258)
T ss_pred CCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45678999999999874 346789999 4556542 3567799999997664
No 167
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=21.28 E-value=2e+03 Score=28.97 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=42.8
Q ss_pred ccccccCCCchhHHHHHhhhhhHHhhhh--------hcccCchHHHHHHhHHhhhhHHHHHHHHH
Q 000538 3 AELANSNYQSGVLYRLVPAVLPVLLISI--------GYVDPGKWAVIIEGGAHFGFDLVALMLVF 59 (1435)
Q Consensus 3 ~~~~~~~~~~~~~rkLlaflGPGfLVSI--------AYIDPGNIaTdlqAGA~fGY~LLWVLLLA 59 (1435)
+|+-|.+..+.-|+-+.+..|=|+|++. +.++-..+...+-.|-+||...+-+-++-
T Consensus 314 GEHYItr~r~EY~~M~~sAaGGG~iia~ma~lKi~l~~l~l~~f~~~~~~slNYa~gFvlI~llh 378 (643)
T PF10136_consen 314 GEHYITRDRKEYFAMLRSAAGGGLIIAFMALLKILLGGLGLSPFWEGFLASLNYALGFVLIHLLH 378 (643)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666677778888889999999875 35677778888888999987766555443
No 168
>PF03784 Cyclotide: Cyclotide family; InterPro: IPR005535 Cyclotides (cyclo peptides) are plant peptides of ~30 amino acids with a head to-tail cyclic backbone and six cysteine residues involved in three disulphide bonds. The cyclotides are extremely resistant to proteolysis and are remarkably stable. Cyclotides display a diverse range of biological activities, including uterotonic activity, inhibition of neurotensin binding, hemolytic, anti-HIV and anti-microbial activity. This range of biological activities makes cyclotides amenable to potential pharmaceutical and agricultural applications. Although their precise role in plants has not yet been reported, it appears that they are most likely present as defence molecules [, , , ]. The three-dimensional structure of cyclotides is compact and contains a number of beta-turns, three beta strands arranged in a distorted triple-stranded beta-sheet, a short helical segment, and a network of disulphide bonds which form a cystine knot. The cystine knot consists of an embedded ring in the structure, formed by two disulphide bonds and their connecting backbone segments is threaded by a third disulphide bond. Although the cystine knot motif is now well known in a wide variety of proteins, the cyclotides remain as the only example in which a cystine knot is embedded within a circular protein backbone, a motif that is referred to as the cyclic cystine knot (CCK) [, , , ]. Cyclotides can be separated into two sub-families, one of which tends to contain a larger number of positively charged residues and has a bracelet-like circularisation of the backbone. The second subfamily contains a backbone twist due to a cis-Pro peptide bond and may conceptually be regarded as a molecular Moebius strip [, ]. Bracelet and Moebius families of cyclotides possess a Knottin scaffold. The cyclotide family of proteins is abundant in plants from the Rubiaceae and Violaceae families and includes: Kalata B1. Circulins. Cyclopsychotride A. Cycloviolacin O1. ; GO: 0006952 defense response; PDB: 2ERI_A 2KHB_A 1K48_A 1ZNU_A 1N1U_A 2F2J_A 1ORX_A 1NB1_A 1KAL_A 2F2I_A ....
Probab=20.74 E-value=19 Score=29.61 Aligned_cols=12 Identities=33% Similarity=1.151 Sum_probs=9.6
Q ss_pred CCCCCCCcccccc
Q 000538 1262 VPHCGDGCIWKVD 1274 (1435)
Q Consensus 1262 ~p~cg~~c~w~~~ 1274 (1435)
+| |||.|||-+=
T Consensus 2 ip-CGEtCv~~pC 13 (30)
T PF03784_consen 2 IP-CGETCVFIPC 13 (30)
T ss_dssp EE-EEEETSSSST
T ss_pred CC-cccceeeeee
Confidence 46 9999999763
No 169
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=20.66 E-value=1.7e+03 Score=27.65 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccc
Q 000538 476 ALPFAVFLITTFTSLCLMLWLATTPLRS 503 (1435)
Q Consensus 476 ~~~~~v~~i~~~~yl~f~lyL~~~pl~s 503 (1435)
.++++++++=+++.+++++.+++.-+.+
T Consensus 386 ~vg~vi~~i~~~v~~~~~i~~~~~~~~~ 413 (438)
T PF06011_consen 386 VVGYVIIIINAIVLLILFILIIVSTIIS 413 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777776666666666665544433
No 170
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=20.49 E-value=1.1e+03 Score=30.02 Aligned_cols=99 Identities=13% Similarity=0.165 Sum_probs=51.0
Q ss_pred cCchHHHHHHhHH-----------hhhhHHHHHHHHHHHHHHHHHHHHhhhheecCCC--HHHHHHhhcCchhHHHHHHH
Q 000538 34 DPGKWAVIIEGGA-----------HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKD--LAQICGEEYDKWTCVFIGVQ 100 (1435)
Q Consensus 34 DPGNIaTdlqAGA-----------~fGY~LLWVLLLAtIlg~llQ~LSARLGVVTGK~--LAEicRe~Ygk~~a~~LWIm 100 (1435)
||.+.....+.+. ...-+++|.+-+++++-|++ |+|+.-=-. |-| .++|++.-+
T Consensus 224 d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYiv-----R~gi~dW~p~YL~e--~k~~s~~~a------ 290 (448)
T COG2271 224 DPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVV-----RYGINDWGPLYLSE--VKGFSLVKA------ 290 (448)
T ss_pred CchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHH--hcCCCHHHH------
Confidence 7777654444443 24457899999999998875 666632111 222 334544332
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHhh-CC--hhHHHHHHHHHHHHHHHHhc
Q 000538 101 TELSVILLDLTMVLGIAHG---LNLLM-GV--ELSTCVFLAAADAILFPFFA 146 (1435)
Q Consensus 101 aELAIIasDIaEVIGtAIA---LnLLF-GI--PLw~GVLITaldtflfL~L~ 146 (1435)
..++...+++-+.|+-++ --.+| |- |.-....+.++.++++.++.
T Consensus 291 -~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~ 341 (448)
T COG2271 291 -NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA 341 (448)
T ss_pred -HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC
Confidence 333333444444443322 23456 32 55444444555555555554
No 171
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=20.14 E-value=1.5e+03 Score=26.98 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHhcCcchhhHHHHhhhhhhhhHHHH
Q 000538 91 KWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLM--GVELSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLL 168 (1435)
Q Consensus 91 k~~a~~LWImaELAIIasDIaEVIGtAIALnLLF--GIPLw~GVLITaldtflfL~L~s~~~~D~~~~l~yyG~RKLE~l 168 (1435)
+......|+.+...++.+-+--++|.-.+-.-|+ ++.-..=++-.++.-+.+=+-.++-..|- -||..|+|.+
T Consensus 9 ~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~H-----pyGh~k~E~l 83 (304)
T COG0053 9 KLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDH-----PYGHGKAETL 83 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCchhHHHH
Q ss_pred HHHHHHHHHHHHHHhHhhhCCCcccccccccc-ccCCChHHHHHHHhcCcchHHHHHHhhHhhhhccccccccchhchhh
Q 000538 169 WICTAGIILLSYVLGVLISQPEIPLSVNGMLT-KFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHD 247 (1435)
Q Consensus 169 ~~~LI~IMaLsFV~elfis~Pd~geVl~GLvP-~lpg~sl~~AVAILGATIMPHNlYLHSaLVqsR~~~~d~sk~a~r~D 247 (1435)
..++++++.+...+..+. ..+.+-+.| +.+.......+++++..++-+.+...-.+.++-+-+ ++..|
T Consensus 84 ~sl~~~~~i~~~g~~i~~-----~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~------aL~Ad 152 (304)
T COG0053 84 ASLIVSILIFAAGFEILL-----EAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQ------ALIAD 152 (304)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 000538 248 HFFAILCIFSGIYMVNYVLMNSAANLFYS 276 (1435)
Q Consensus 248 ~~fsi~~i~lgsFLINlaVViVaAavfyg 276 (1435)
.+-....+++ ++++++.....+.+
T Consensus 153 a~h~~sD~~t-----s~~~lvgl~~~~~g 176 (304)
T COG0053 153 ALHHRSDVLT-----SLAVLVGLLGSLLG 176 (304)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHHHhC
Done!