Query 000538
Match_columns 1435
No_of_seqs 231 out of 1365
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 18:25:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000538.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_309-313//hhsearch_pdb/000538hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 1.0 1 1 78.7 35.6 330 25-418 33-381 (501)
2 3dh4_A Sodium/glucose cotransp 1.0 1 1 66.2 34.5 118 27-147 30-152 (530)
3 2xq2_A Sodium/glucose cotransp 1.0 1 1 60.3 40.2 115 30-147 62-181 (593)
4 3l1l_A Arginine/agmatine antip 1.0 1 1 47.1 39.8 32 325-356 270-301 (445)
5 4djk_A Probable glutamate/gamm 1.0 1 1 45.5 37.8 84 33-123 27-117 (511)
6 3gia_A Uncharacterized protein 1.0 1 1 41.9 38.2 30 326-355 269-298 (444)
7 4ain_A Glycine betaine transpo 1.0 1 1 23.9 18.0 50 29-80 35-90 (539)
8 2a65_A Leutaa, Na(+):neurotran 1.0 1 1 23.3 30.6 122 326-455 337-470 (519)
9 2wsw_A BCCT family betaine/car 1.0 1 1 21.3 24.2 55 30-91 33-93 (509)
10 1r1f_A Palicourein; cyclotide, 1.0 1 1 21.3 -2.6 34 1264-1297 2-37 (37)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=1.00 E-value=1 Score=78.71 Aligned_cols=330 Identities=10% Similarity=0.001 Sum_probs=156.5
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 886656223686278888868844457---99999999999999999875213013998899997233860478999999
Q 000538 25 VLLISIGYVDPGKWAVIIEGGAHFGFD---LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQT 101 (1435)
Q Consensus 25 GlLVSIAYIDPGNIaSdLqAGA~fGYs---LLWVLLLAtIlgillQ~LSARLGVVTGk~LAEicRe~Ypk~~~ilLWIlA 101 (1435)
..+...+-+..+++.......+ |.. -++.+++.++++.++--+.+++|.-+|......+|..||++.+.+..++.
T Consensus 33 ~~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~ 110 (501)
T 2jln_A 33 AAIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLK 110 (501)
T ss_dssp HHHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999999988999999998835--86899999999999999999999986887451997455348413515899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HCCH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999997874----0880-6899999999999998720740266899865444466999999999999
Q 000538 102 ELSVILLDLTMVLGIAHGLNLL----MGVE-LSTCVFLAAADAILFPFFAGQLFIDELIMLNFQENYKAKLLWICTAGII 176 (1435)
Q Consensus 102 ELAIIasDIaEVIGtAIALnLL----fGIP-Lw~GVLITaidtllLL~l~s~~~~d~~~~l~y~G~RKlE~li~~LI~IM 176 (1435)
.+..++-..-+....+.+++.+ +|++ .|+++++..+..+++.+++ +...++++.+...++.++
T Consensus 111 ~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G------------~~~i~~~~~~~~p~~~i~ 178 (501)
T 2jln_A 111 ALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG------------ITFIRWMNVFASPVLLAM 178 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999986186158999999999999999918------------999999999999999999
Q ss_pred HHHHHHHHHHHCCCC--CCCCCCCCCCCCCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCCCCC-CHHCHHH----H
Q ss_conf 999997676417880--0011521346688737899998-618503799998667554124665520-0000235----8
Q 000538 177 LLSYVLGVLISQPEI--PLSVNGMLTKFSGDSAFSIMSL-LGASMMPHNFYLHSSIVRRHQGQVNIS-KGALCHD----H 248 (1435)
Q Consensus 177 aLsFvi~liis~Pd~--geVl~GLVP~lpg~sl~~AVAI-IGATIMPHNlYLHSALVqsR~~~~~~~-k~a~~~D----~ 248 (1435)
.+.+.+.++ .+.++ +.+.. .-|....-+...++.+ +|..+ +...+. +-. +|..+++.. .++..+- .
T Consensus 179 ~i~~~~~~l-~~~g~~~~~~~~-~~~~~~~~~f~~ai~~~~~~~~-~~~~~~-~Dy--sRy~~~~~~~~~~~~~~~~~~~ 252 (501)
T 2jln_A 179 GVYMVYLML-DGADVSLGEVMS-MGGENPGMPFSTAIMIFVGGWI-AVVVSI-HDI--VKECKVDPNASREGQTKADARY 252 (501)
T ss_dssp HHHHHHHHH-HHHTCCHHHHTT-CCCSSCCSCHHHHHHHHHTTTH-HHHTTT-HHH--HTTBCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHCCCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHH-HHHHCC-CCC--CCCCCCCCCCCCCCHHHCCCHH
T ss_conf 999999999-846876202430-6886424799999999999999-998526-763--3417897542111022112038
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99999999999999999999972000127953354877999878754210145676433356630236455423025214
Q 000538 249 FFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQLFAYSFCSNNNYHLLHTHPMISIRIVEMQVFRSPV 328 (1435)
Q Consensus 249 ~fsil~illgsfLINlaIIiVaAavLygtGi~V~T~qDAa~lLepL~a~~fc~~~~~~Ll~~~~l~s~gI~~a~lLgG~~ 328 (1435)
+.+. +.+.++.+..++.+++..-...+ ..++.+ .+.. .+.++.
T Consensus 253 ~~g~---~lG~~i~~~~~~~lG~~~~~~~~--~~dp~~---~l~~-----------------------------~l~~~~ 295 (501)
T 2jln_A 253 ATAQ---WLGMVPASIIFGFIGAASMVLVG--EWNPVI---AITE-----------------------------VVGGVS 295 (501)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHS--CSCHHH---HHHH-----------------------------HHTCCC
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHCC--CCCHHH---HHHH-----------------------------HHCCCH
T ss_conf 9999---89999999999999999987402--268999---9999-----------------------------713405
Q ss_pred H-HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 8-99999-9999988787997-7755899985330788676137789999999999999997096227999999999999
Q 000538 329 V-PFAFV-LVLFFSNQIIAVN-WNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVA 405 (1435)
Q Consensus 329 A-~iIFA-IGLLAAGqSSTIT-gTlAGQ~VMeGFLglri~~w~RrLiTR~IAIIPALiVal~sG~eglvqLLiisQVI~S 405 (1435)
. ..+.. +.++.+..++.+. ..|+....++.++...+++ |+... +++++.. +++. .+. ...+..|...+..
T Consensus 296 ~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~--~~~~~-i~~vi~~-~i~~-~~~--~~~f~~FL~~lg~ 368 (501)
T 2jln_A 296 IPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTF--KTGVI-VSAVVGL-LMMP-WQF--AGVLNTFLNLLAS 368 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCH--HHHHH-HHHHHHH-HTCG-GGT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHH-HHHHHHH-HHHH-HHH--HHHHHHHHHHHHH
T ss_conf 99999999999999999997711888999999948666662--58999-9999999-9999-986--8799999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8878899999998
Q 000538 406 IMLPSSVIPLFRV 418 (1435)
Q Consensus 406 LlLPFALIPLL~l 418 (1435)
+.-|.+.|-+.-+
T Consensus 369 ~l~P~~gI~l~Dy 381 (501)
T 2jln_A 369 ALGPLAGIMISDY 381 (501)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=1.00 E-value=1 Score=66.21 Aligned_cols=118 Identities=9% Similarity=0.138 Sum_probs=74.5
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 66562236862788888688444579999999---9-9999999998752130139988999972338604789999999
Q 000538 27 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLV---F-NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTE 102 (1435)
Q Consensus 27 LVSIAYIDPGNIaSdLqAGA~fGYsLLWVLLL---A-tIlgillQ~LSARLGVVTGk~LAEicRe~Ypk~~~ilLWIlAE 102 (1435)
-+.+.++....+......+..+|+.-+|..+. . .++++++-..--|.++ .++.|..+++|++..+.+.-+...
T Consensus 30 s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~---~T~~e~l~~Rfg~~~~~~~a~~~l 106 (530)
T 3dh4_A 30 SLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWI 106 (530)
T ss_dssp HHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999987999987799999827599999999999999999999999998699---149999999849688999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999-9999999999997874088068999999999999987207
Q 000538 103 LSVIL-LDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 103 LAIIa-sDIaEVIGtAIALnLLfGIPLw~GVLITaidtllLL~l~s 147 (1435)
+..+. .-...+.+.+..++.++|+|.+++++++++.+.+...++.
T Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 107 SLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGG 152 (530)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999699889999999999999997134
No 3
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=1.00 E-value=1 Score=60.34 Aligned_cols=115 Identities=9% Similarity=0.152 Sum_probs=73.9
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCHHHHHHHHHHHHH-
Q ss_conf 6223686278888868844457999999---99-999999999875213013998899997233860478999999999-
Q 000538 30 IGYVDPGKWAVIIEGGAHFGFDLVALML---VF-NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS- 104 (1435)
Q Consensus 30 IAYIDPGNIaSdLqAGA~fGYsLLWVLL---LA-tIlgillQ~LSARLGVVTGk~LAEicRe~Ypk~~~ilLWIlAELA- 104 (1435)
+.++....+......+..+|+.-+|..+ +. .++++++-..--|.++ .++.|..++||++..+.+.-+...+.
T Consensus 62 at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~T~~e~l~~Rfg~~~~~~~ai~~l~~~ 138 (593)
T 2xq2_A 62 AANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGI---YTIPEFVEKRFNKKLKTILAVFWISLY 138 (593)
T ss_dssp GGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTTC---CSHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 98725899963769999718799999999999999999999999985799---972799998826750799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999997874088068999999999999987207
Q 000538 105 VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 147 (1435)
Q Consensus 105 IIasDIaEVIGtAIALnLLfGIPLw~GVLITaidtllLL~l~s 147 (1435)
++..-..++.+.+..++.++|+|.+.++++.++.+.++..++.
T Consensus 139 ~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GG 181 (593)
T 2xq2_A 139 IFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGG 181 (593)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999994085599999999999999987214
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=47.12 Aligned_cols=32 Identities=6% Similarity=-0.120 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52148999999999988787997775589998
Q 000538 325 RSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 356 (1435)
Q Consensus 325 gG~~A~iIFAIGLLAAGqSSTITgTlAGQ~VM 356 (1435)
+|++...++.++++.+.+++..+..++...++
T Consensus 270 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 301 (445)
T 3l1l_A 270 LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_dssp HCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64779999999999999999999999979999
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=45.50 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHH--HHHEECCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 368627888886884445799-99999999----9999999875--2130139988999972338604789999999999
Q 000538 33 VDPGKWAVIIEGGAHFGFDLV-ALMLVFNF----AAIFCQYLSA--RIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 105 (1435)
Q Consensus 33 IDPGNIaSdLqAGA~fGYsLL-WVLLLAtI----lgillQ~LSA--RLGVVTGk~LAEicRe~Ypk~~~ilLWIlAELAI 105 (1435)
++...+... +..|..++ |.++...+ .++.+-|++. ++- .-+.....++-+|+.+.++.+...-+..
T Consensus 27 ig~~~~~~~----~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P---~GG~y~~~~~~~g~~~g~~~g~~~~~~~ 99 (511)
T 4djk_A 27 MAVYEYPTF----ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE---EGGVFAWVSNTLGPRWGFAAISFGYLQI 99 (511)
T ss_dssp CCGGGHHHH----HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 843212777----862999999999999999999999999982646679---9873103876559628999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999997874
Q 000538 106 ILLDLTMVLGIAHGLNLL 123 (1435)
Q Consensus 106 IasDIaEVIGtAIALnLL 123 (1435)
+.....+..+.+..+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ 117 (511)
T 4djk_A 100 AIGFIPMLYFVLGALSYI 117 (511)
T ss_dssp HHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=41.91 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 214899999999998878799777558999
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSGQVV 355 (1435)
Q Consensus 326 G~~A~iIFAIGLLAAGqSSTITgTlAGQ~V 355 (1435)
|++...++.++.+.+..++..+..+++..+
T Consensus 269 g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~ 298 (444)
T 3gia_A 269 GNLGFLLISIGALFSISSAMNATIYGGANV 298 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 278999999999999999999999998899
No 7
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=1.00 E-value=1 Score=23.91 Aligned_cols=50 Identities=12% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCC
Q ss_conf 56223686278888868-----84445799999999999999999875213013-998
Q 000538 29 SIGYVDPGKWAVIIEGG-----AHFGFDLVALMLVFNFAAIFCQYLSARIAVVT-GKD 80 (1435)
Q Consensus 29 SIAYIDPGNIaSdLqAG-----A~fGYsLLWVLLLAtIlgillQ~LSARLGVVT-Gk~ 80 (1435)
..+.++|......+.+. .+||+-.+|......+ +.+--.-.|+|-+. |.+
T Consensus 35 ~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~--f~l~lafS~~G~IrLG~~ 90 (539)
T 4ain_A 35 VWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVF--FIVVIAASKFGTIRLGRI 90 (539)
T ss_dssp HHHHTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSGGGSCBSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHEECCCCCEECCCC
T ss_conf 99998789999999999999998876999999999999--888760457775500899
No 8
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=1.00 E-value=1 Score=23.27 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 214899999999998878799777558-9998533078867613778999999999999999709622799999999999
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSG-QVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 404 (1435)
Q Consensus 326 G~~A~iIFAIGLLAAGqSSTITgTlAG-Q~VMeGFLglri~~w~RrLiTR~IAIIPALiVal~sG~eglvqLLiisQVI~ 404 (1435)
|+.-..+|-+-|+.+|.+|.+...-.- ..+++.| + +++++-.++.-++..+-.+.++. .+ .+ .++.+. ...
T Consensus 337 g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~-~--~~R~~~~~~v~~~~fllgl~~~~-~~-~g-~~~~D~--~~~ 408 (519)
T 2a65_A 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-K--LSRKHAVLWTAAIVFFSAHLVMF-LN-KS-LDEMDF--WAG 408 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C--CCHHHHHHHHHHHHHHHHHHHHH-BT-TH-HHHHHH--HTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHHC-CC-CC-CCHHHH--HHH
T ss_conf 41369999999999999998778657689999751-8--74899999999999999999973-79-98-425799--986
Q ss_pred HHHHHHHHHHHHHHH----------HCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 988788999999986----------0743236777437999-99999999999999999999
Q 000538 405 AIMLPSSVIPLFRVA----------SSRQIMGVHKISQYHE-FLVLITFMGMLGLKLIFMVE 455 (1435)
Q Consensus 405 SLlLPFALIPLL~lt----------Ssr~IMGefkNS~~~n-ILawii~llII~LNIyfVvs 455 (1435)
.+.+|+..+....+. .+-+-|..++.+.+.+ .+.+++-++++.+=+..+++
T Consensus 409 ~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~ 470 (519)
T 2a65_A 409 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWARE 470 (519)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCCCHHHHHHHEEEEHHHHHHHHHHHHHHHH
T ss_conf 79999999999972100343357999987056776689998727745799999999999994
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=1.00 E-value=1 Score=21.30 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=25.1
Q ss_pred HHCCCCCHHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC-CCCHHHHHHHHCCC
Q ss_conf 62236862788---888688--4445799999999999999999875213013-99889999723386
Q 000538 30 IGYVDPGKWAV---IIEGGA--HFGFDLVALMLVFNFAAIFCQYLSARIAVVT-GKDLAQICGEEYDK 91 (1435)
Q Consensus 30 IAYIDPGNIaS---dLqAGA--~fGYsLLWVLLLAtIlgillQ~LSARLGVVT-Gk~LAEicRe~Ypk 91 (1435)
.+.++|..... .++.-. +||+-.+|...... .+.+--.-.|+|-+. |+ -+-||+.
T Consensus 33 ~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~--~f~l~la~S~~G~IrLG~-----~kPefs~ 93 (509)
T 2wsw_A 33 LTVRDLDASNEVINAVFSYVTNVWGWAFEWYMVIMF--GGWFWLVFGRYAKKRLGD-----EKPEFST 93 (509)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHSTTTTCBSSS-----SCCSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHEEEECCCCCEEECC-----CCCCCCC
T ss_conf 999878999999999999999873199999999999--974201775658655678-----9888765
No 10
>1r1f_A Palicourein; cyclotide, plant protein; NMR {Palicourea condensata} SCOP: g.3.3.4
Probab=1.00 E-value=1 Score=21.26 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=22.2
Q ss_pred CCCCCCCCCCC--EEEEEHHHHHHHHHHHCCCCCCC
Q ss_conf 77998400342--56653146899976210122477
Q 000538 1264 HCGDGCIWKVD--LILSFGVWCIHRILNLSLMESRP 1297 (1435)
Q Consensus 1264 ~cg~~c~w~~~--l~~sfgvwci~r~l~~~~~~srp 1297 (1435)
-|||.|||-+- .---.|--|..+++.++...|-|
T Consensus 2 pCGEsCv~iP~Ct~t~~~GCsC~~kv~~~Cy~Ns~p 37 (37)
T 1r1f_A 2 FCGETCRVIPVCTYSAALGCTCDDRSDGLCKRNGDP 37 (37)
T ss_dssp CCSSCCSSSCSCSSGGGGTCCBCCSSSCCBCCSSCC
T ss_pred CCCCCEEECCCCCCCCCCCCEECCCCCHHHEECCCC
T ss_conf 756625872665232553753746607201015689
Done!