Query 000538
Match_columns 1435
No_of_seqs 231 out of 1365
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 18:35:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000538.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_309-313//hhsearch_scop/000538hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 40.5 6.8 0.00049 14.0 36.3 123 326-456 333-467 (509)
2 d1kala_ g.3.3.1 (A:) Kalata B1 7.2 44 0.0032 8.4 0.4 12 1261-1272 9-20 (29)
3 d2a6aa1 c.55.1.9 (A:1-103) Hyp 5.0 63 0.0046 7.4 -0.3 12 687-698 60-71 (103)
4 d1sa3a_ c.52.1.23 (A:) Restric 4.3 84 0.0061 6.6 0.2 34 1250-1283 178-211 (262)
5 d1dfna_ g.9.1.1 (A:) Defensin 4.1 89 0.0065 6.4 0.5 12 864-875 5-16 (30)
6 d1x9za_ d.292.1.1 (A:) DNA mis 3.9 86 0.0063 6.5 -0.2 31 1188-1220 9-39 (182)
7 d1bu2a2 a.74.1.1 (A:149-250) V 3.5 1.1E+02 0.0078 5.8 -0.1 20 206-225 54-73 (102)
8 d1u83a_ c.1.27.1 (A:) (2r)-pho 3.5 67 0.0049 7.2 -1.1 30 1191-1220 173-206 (249)
9 d1okja1 c.55.1.9 (A:1-106) Hyp 3.0 94 0.0068 6.2 -0.8 9 690-698 63-71 (106)
10 d1qwga_ c.1.27.1 (A:) (2r)-pho 2.8 1.4E+02 0.01 5.0 0.7 32 1189-1220 167-206 (251)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=40.53 E-value=6.8 Score=14.01 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 214899999999998878799777558-9998533078867613778999999999999999709622799999999999
Q 000538 326 SPVVPFAFVLVLFFSNQIIAVNWNLSG-QVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 404 (1435)
Q Consensus 326 G~~A~iIFAIGLLAAGqSSTITgTlAG-Q~VMeGFLglri~~w~RrLiTR~IAIIPALiVal~sG~eglvqLLiisQVI~ 404 (1435)
|+.-..+|-+.++.+|.+|.+...-.- ..+++. ++ +.+++...++.++ +.-...+.. ....++ .+++. ...
T Consensus 333 ~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~-~~--~~r~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~D~--~~~ 404 (509)
T d2a65a1 333 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDE-LK--LSRKHAVLWTAAI-VFFSAHLVM-FLNKSL-DEMDF--WAG 404 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SC--CCHHHHHHHHHHH-HHHHHHHHH-HBTTHH-HHHHH--HTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-CC--CCHHHHHHHEEEE-EEHHHHHHH-HHCCHH-HHHHH--HHH
T ss_conf 4137999999999999987733633044898986-49--8636035230678-872524788-735318-88999--999
Q ss_pred HHHHHHHHHH----HH------HHHHCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9887889999----99------986074323677743-7999999999999999999999999
Q 000538 405 AIMLPSSVIP----LF------RVASSRQIMGVHKIS-QYHEFLVLITFMGMLGLKLIFMVEM 456 (1435)
Q Consensus 405 SLlLPFALIP----LL------~ltSsr~IMGefkNS-~~~nILawii~llII~LNIyfVvs~ 456 (1435)
.+.+|+..+. +. ++..+-+-|..++.+ .|.-..-+++-++++.+=++.+++.
T Consensus 405 ~~~l~~~~l~e~i~v~w~yg~~r~~~di~~~~~~~~~~~~~~~~~~i~Pi~l~~ili~~~~~~ 467 (509)
T d2a65a1 405 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREY 467 (509)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHEEEEEECHHHHHHHHHHCCCCCHHHHHHHHEEEEEHHHHHHEEEHHHHHC
T ss_conf 999999999998602237538999999984789877899987403423853635254238642
No 2
>d1kala_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=7.17 E-value=44 Score=8.44 Aligned_cols=12 Identities=33% Similarity=1.027 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCC
Q ss_conf 477779984003
Q 000538 1261 SVPHCGDGCIWK 1272 (1435)
Q Consensus 1261 ~~p~cg~~c~w~ 1272 (1435)
++|-|||.||=.
T Consensus 9 glpicgetcvgg 20 (29)
T d1kala_ 9 GLPVCGETCVGG 20 (29)
T ss_dssp TEECSSCCCTTS
T ss_pred CCCCCCCCCCCC
T ss_conf 853425530365
No 3
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=4.95 E-value=63 Score=7.39 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCC
Q ss_conf 678998500146
Q 000538 687 MSDGPASLRSLS 698 (1435)
Q Consensus 687 ~sdGP~Sf~s~~ 698 (1435)
..-||+||+.+|
T Consensus 60 v~~GPGsfTglR 71 (103)
T d2a6aa1 60 VGIGPGGLTGLR 71 (103)
T ss_dssp EECCSSCHHHHH
T ss_pred HCCCCCCCHHHH
T ss_conf 247887632089
No 4
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp. [TaxId: 479]}
Probab=4.34 E-value=84 Score=6.56 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH
Q ss_conf 6211112222347777998400342566531468
Q 000538 1250 DEASFTNFMVSSVPHCGDGCIWKVDLILSFGVWC 1283 (1435)
Q Consensus 1250 ~~~~~~~~~~~~~p~cg~~c~w~~~l~~sfgvwc 1283 (1435)
..++.+.++++.-+.-+++-+--+++||-|-||-
T Consensus 178 y~erli~W~vt~~~~~~~~~I~~~dyiI~Fqv~~ 211 (262)
T d1sa3a_ 178 YRERFIRWCVTLRAEKSEGNILHPDLLIRFQVID 211 (262)
T ss_dssp GHHHHHHHHHHSCSSCCCSCTTSCSEEEEEEEET
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHC
T ss_conf 8999999998537777777512341578650002
No 5
>d1dfna_ g.9.1.1 (A:) Defensin HNP-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.15 E-value=89 Score=6.39 Aligned_cols=12 Identities=67% Similarity=1.085 Sum_probs=4.4
Q ss_pred CCCCCCCCCCCC
Q ss_conf 788888643223
Q 000538 864 RIPSEDSGERRY 875 (1435)
Q Consensus 864 ~~~~~~~~~~~~ 875 (1435)
|||.--.|||||
T Consensus 5 ripac~agerry 16 (30)
T d1dfna_ 5 RIPACIAGERRY 16 (30)
T ss_dssp ESSCCCTTCCEE
T ss_pred ECCHHHCCCCCE
T ss_conf 454331276420
No 6
>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=3.93 E-value=86 Score=6.49 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=24.6
Q ss_pred HCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 004885202148998845687999887766676
Q 000538 1188 QLEGSEWLFRHNDGADEDLIDRVAAREKFLYEA 1220 (1435)
Q Consensus 1188 ~~egs~wlf~~~~g~de~li~~vaa~e~~~~~~ 1220 (1435)
.+.+.=+|++.++| =-|||+.||.||+.||-
T Consensus 9 ~v~~~Yil~e~~~g--l~lidqhaA~eri~~e~ 39 (182)
T d1x9za_ 9 IVHSDCALLERDGN--ISLLSLPVAERWLRQAQ 39 (182)
T ss_dssp EETTTEEEEEETTE--EEEEEHHHHHHHHHHHH
T ss_pred HHCCEEEEEEECCC--EEEEEHHHHHHHHHHHH
T ss_conf 61187899984896--69974999999999999
No 7
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=3.48 E-value=1.1e+02 Score=5.84 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCCHHHHHHH
Q ss_conf 37899998618503799998
Q 000538 206 SAFSIMSLLGASMMPHNFYL 225 (1435)
Q Consensus 206 sl~~AVAIIGATIMPHNlYL 225 (1435)
+++.-+---.+.--||.-||
T Consensus 54 gllttiet~ntn~~~wt~yl 73 (102)
T d1bu2a2 54 GLLTTIETDNTNCRPWTCYL 73 (102)
T ss_dssp HHHHHHHHTCSSCSTHHHHG
T ss_pred CCEEEEEECCCCCCCHHHHH
T ss_conf 62478860787764257778
No 8
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]}
Probab=3.46 E-value=67 Score=7.22 Aligned_cols=30 Identities=13% Similarity=0.399 Sum_probs=0.0
Q ss_pred CCCCEECCCCCCCHHHHHHHHHH----HHHHHHH
Q ss_conf 88520214899884568799988----7766676
Q 000538 1191 GSEWLFRHNDGADEDLIDRVAAR----EKFLYEA 1220 (1435)
Q Consensus 1191 gs~wlf~~~~g~de~li~~vaa~----e~~~~~~ 1220 (1435)
|.+-+|+.+|-+.+++++.+.++ ||+++|+
T Consensus 173 g~~Gi~~~~g~~r~~~i~~ii~~~~~~~~iifEA 206 (249)
T d1u83a_ 173 GTGGICSSSGDVRFQIVDDIISSDIDINRLIFEA 206 (249)
T ss_dssp --------------CCHHHHHTTTSCGGGEEEEC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHEEEEC
T ss_conf 7777758886614889999998368831089967
No 9
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=94 Score=6.23 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q ss_conf 998500146
Q 000538 690 GPASLRSLS 698 (1435)
Q Consensus 690 GP~Sf~s~~ 698 (1435)
||+||+.+|
T Consensus 63 GPGsfTglR 71 (106)
T d1okja1 63 GPGSFTGVR 71 (106)
T ss_dssp ESSCHHHHH
T ss_pred CCCCCCCCH
T ss_conf 367654205
No 10
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.84 E-value=1.4e+02 Score=5.02 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=0.0
Q ss_pred CCC-----CCCEECCCCCCCHHHHHHHHHH---HHHHHHH
Q ss_conf 048-----8520214899884568799988---7766676
Q 000538 1189 LEG-----SEWLFRHNDGADEDLIDRVAAR---EKFLYEA 1220 (1435)
Q Consensus 1189 ~eg-----s~wlf~~~~g~de~li~~vaa~---e~~~~~~ 1220 (1435)
+|+ +.-+|+.+|-+.++++|.++.+ ||+++|+
T Consensus 167 iEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~~kiifEA 206 (251)
T d1qwga_ 167 IEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEA 206 (251)
T ss_dssp ECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEEC
T ss_pred EEHHHCCCCCCEECCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 4244307762224688771288999999748820279978
Done!