Citrus Sinensis ID: 000539

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430---

MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV

ccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccccccEEEEcHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHccccEEEEEHHHHHcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHccccccEEEEccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcc

cccccccccccEEEcccccccccccEEEHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccEEEccccccccccccccccEEEEccccccccEEEcccccccEccccccccccHcHcccccccccccccccEEEEEEEEcccccccccccccEEEccccccccccccccccEEEcccccccccccccccccccccHHHHHcHHHHcccccHHcccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHcccccccccEEcccccEEEEEcccccccEEcccccEEccccEEEEEEccccccccccccccccccccccccccccccccccEEEEccccccEEEEccccHHHHHHHccccccccccccccccccccHHcccccccccccccHHccccccccccccccccccccccccccccHHHccccccccccccccEEEEccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHHHcccccccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHcccEEEEEHHHHHHHccccccccccHHHcccccccccccccccccccccccccccccccccccEcccccccccccccHHHEEEEEEEEHHHHHccccHHHHHHHHHHHHHccEEEEcccHHHccHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHcccccccccccHHHHHHHcHHHHHHHHHHHHcccccccccccccccccEEccccccHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHcHHHccccHHHHccccccccccccHHHHHHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccEEEEEccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccHcccccHHHHHHHHcc

mlmadnawlcgevsaadefaddqglsidMDTLLGIleeekqpdrvksspgdlslrnlsqDELVqdvgshsnlqlqsgfkgdmrdiatyplygleisgaesgglgdsssqlepteqkcsplqtcsasfsdwfnqnsgtccpesvgisqfetpgcstassfsegdgyhfldhrntldfgvlgakagirfghvgshidsrsvdaspssitenfderyghygasignrlgssvpegnlctyvdvpytdaevsshnvastdstichgseiisdddyysampcyintgdtifgdpssfnfqhllsseetatkpkdeegeftteiacsssglvlnaqggpgkgsmlkvpaidyldakrqcedsknglpiygnslsnitlgdgkrsaqpctyshshssrtKQMVFAkdegnddlfpcwstvsdsvepideavgrnssyhdgcnsfpfkdsgqsfiglspsllsqnqvvhAKEEHEDLILESKRARFCQEicdgsssrspidgrhlslnlngsrqyfpyaqpstlnkkeldgVKEDMEAEIKTRSMASHLlklspesiqsnssdckshvddepdiciledisqparsnqslvlgktlsmnrsacsnhsvalgkpvvtsqhssysdypgypgvpltglggmkskaSDERLILQVAMQgisqpnaeasapdgvlavPLLRHQRIALSWMVQketsslhcsggiladdqglgkTISTIALILkerppsfrteddnKRQLEtlnldeedngiqvngldlvkqesdycrvvpngssaksfnfveqakgrpaagtlvvcpTSVLRQWAEELRNKVTSKGSLSVLVYhgssrtkdpcelakfdVVITTYSIVSmevpkqplgdkedeeekmkiegedlppmycssskkrkcppssdrkgskqkkgpdgllldivagplakvgWFRVVLDEAQSIKNHRTQVARACWGLrakrrwclsgtpiQNAIDDLYSYFrflrydpfavYKSFCSMikvpisknpvkGYKKLQAVLKTIMLRRtkgtlldgepiinlppkvimlkqvdftdeerdFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQacdhpllvkgfdsnslLRSSVEMAKKLPQERQMYLLNCLEASLAIcgicndppedaVVSICGhvfcnqcicerltaddnqcptrnckirlslssVFSKAtlnnslsqrqpgqeiptdysdsklveapscegvwynSSKIKAALEVLQSLakprgntvtnhslrhsfngsiccpgdsndlhggdtldniSDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDkavkdfntlPEVSVMIMSLKAASLGLNMVAACHVLLLDlwwnpttedqaidrahrigqtrpvSVLRLTVKNTVEDRILALQQKKREMVASafgedetggqqtrltvddlNYLFMV

MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEeekqpdrvksspgdlSLRNLSQDELVQDVGshsnlqlqsgfkgdMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVgshidsrsvdaspSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHnvastdsticHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPctyshshssrtKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEIcdgsssrspidgRHLSLNLNGSRQyfpyaqpstlnkkeldGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILedisqparsNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIlkerppsfrteddNKRQLEtlnldeedngiqVNGLDLVKQESDYCRVVPngssaksfnfVEQAkgrpaagtlvvCPTSVLRQWAEELrnkvtskgslSVLVYhgssrtkdpcelAKFDVVITTYSIvsmevpkqplgdkedeeekmkiegedlppmycssskkrkcppssdrkgskqkkgpdgLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKvpisknpvkgyKKLQAVLKTIMLRrtkgtlldgepiinlppkvIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVkgfdsnsllRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLtaddnqcptRNCKIRLSLSSVFSKATlnnslsqrqpgqeiptdysdsKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCsidsiklggEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDrahrigqtrpvsvlrltvkntvEDRILALQQKKREMVASafgedetggqqtrltvddlnYLFMV

MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLYGLEISGAESGGLGDSSSQLEPTEQKCSPLQTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGdkedeeekmkiegedLPPMYcssskkrkcppssdrkGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV

*****NAWLCGEVSAADEFADDQGLSIDMDTLLGIL*******************************************GDMRDIATYPLYGLEI***************************CSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHI***************FDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQH****************************LVL***********LKVPAIDYLDAKR*C*****GLPIYGNSL**I*********************************DDLFPCWSTVSDSV***************GCNSFPF******FIGL*******************LILESKRARFCQEIC**********************************************************************************ICIL**************************************************Y**V****************LILQVA***************GVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK***************************IQVNGLDLVKQESDYCRVVPNG**AKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM*****************************************************GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR**********QERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVF*****************************APSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPG*******************KIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ***********************TVDDLNYLF**

*******WLCGEVSAADEFADDQGLSIDMDTLLGIL**************************************************************************************************************************************RNTLDFGV********************************DERYGHYGA**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ERLILQV*******************AVPLLRHQRIALSWMVQ**************DDQGLGKTISTIALILKERPPSFRTE******************************************************RPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPL**********************************************GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQF***********NYVNILLMLLRLRQACDHPLLVKGF***************LPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQ*************************WYNSSKIKAALEV***************************PGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS**************PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE**********************LNYLFMV

MLMADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEK**********DLSLRNLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLYGLEISGAES********************QTCSASFSDWFNQNSGTCCPESVGISQFETPGCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHID**********ITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEE***********FTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLG*******************KQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSP**************DDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQ************KIEGEDLPPMY**********************GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV

****DNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEE*******************************************RDIA***************************************************CCPES**I*QF*T*GCSTASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDERYGHYGASIGNRLGSSVPEGNLCTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDDDYYSAMPCYINTGDTIFGDPSSFNFQHLLSSEETATKPKDEEGEFTTEIACSSSGLVLNAQGGPGKGSMLKVPAIDYLDAKRQCEDSKNGLPIYGNSLSNITLGDGKRSAQPCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFKDSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLNLNGSRQYFPYAQPSTLNK******************************************DDEPDICILEDISQP*****S******************************************************SDERLILQVAMQGISQ***EASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER**************************************************************PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPK********************************************KKGPD*LL**IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV*********************************CEGVWYNSSKIKAALEVLQSLAKP********SLRHSFN***C**G***DLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE*ETGG*QTRLTVDDLNYLFMV

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1433	2.2.26 [Sep-21-2011]
O60177		1040	Uncharacterized ATP-depen	yes	no	0.452	0.624	0.292	2e-92
O13762		897	Uncharacterized ATP-depen	no	no	0.436	0.697	0.303	6e-84
P31244		790	DNA repair protein RAD16	yes	no	0.356	0.646	0.309	6e-82
P0CQ66		1198	DNA repair protein RAD5 O	yes	no	0.441	0.528	0.297	4e-81
P0CQ67		1198	DNA repair protein RAD5 O	N/A	no	0.441	0.528	0.298	6e-81
P79051		861	ATP-dependent helicase rh	no	no	0.367	0.610	0.288	4e-70
Q14527		1009	Helicase-like transcripti	yes	no	0.304	0.433	0.321	2e-69
Q5ACX1		1084	DNA repair protein RAD5 O	N/A	no	0.390	0.515	0.272	1e-65
Q4WVM1		1245	DNA repair protein rad5 O	no	no	0.442	0.509	0.265	4e-65
Q5BHD6		1202	DNA repair protein rad5 O	yes	no	0.427	0.509	0.269	1e-64

>sp\|O60177\|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1	Back alignment and function desciption

 Score =  342 bits (876), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 234/801 (29%), Positives = 386/801 (48%), Gaps = 152/801 (18%)

Query: 647  QGISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 706
            Q ++ P      P G++   L+ HQ+  L W+ + E SS    GGILADD GLGKT+  +
Sbjct: 371  QLVNDPTIREGTPAGLIPT-LMEHQKEGLMWLKRLEESS--KKGGILADDMGLGKTVQAL 427

Query: 707  ALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSF 766
            AL++  RP                                           P   S K+ 
Sbjct: 428  ALLVT-RP-------------------------------------------PESKSVKT- 442

Query: 767  NFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE-LAK 825
                         TL++ P S+L+QW  E+  K+      +V ++HGSS+     E L  
Sbjct: 443  -------------TLIITPVSLLQQWHNEILTKIAPSHRPTVYIHHGSSKKHKIAEQLMS 489

Query: 826  FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSK 885
            +D+V+TTY++++ E   +   DK  E+     + E LP                      
Sbjct: 490  YDIVLTTYNVIAYEFKNKMAYDKSIEDNAPIKKFEHLP---------------------- 527

Query: 886  QKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 945
                              +  W+RV+LDEAQ+IKN  T  AR C  L +  RWCLSGTP+
Sbjct: 528  ----------------FFEAEWYRVILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPM 571

Query: 946  QNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN--PVKGYKKLQAVLKTIMLRRTKG 1003
            QN +++ YS  +FLR  P++ + SF     +P+S N       K+ + +LK ++LRRTK 
Sbjct: 572  QNGVEEFYSLIKFLRIKPYSDWSSFSKDFTIPLSSNINTSAPMKRFRGLLKAVLLRRTKN 631

Query: 1004 TLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILL 1063
            T +DG+PI+ LPPK  +  + D +  E +FY+ L+  ++ Q ++Y   GT+  +Y ++L+
Sbjct: 632  TKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLV 691

Query: 1064 MLLRLRQACDHPLLVKGF-----DSNSLLRSSVEMAKKLPQE--RQMYLLNCLEASLAIC 1116
            +LLRLRQAC HP L+        D++S    +  +  ++  E   ++ L+  L+     C
Sbjct: 692  LLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQ-----C 746

Query: 1117 GICNDPPEDAVVSI-CGHVFCNQCICERLTADDN---QCPTRNCKIRLSLSSVF--SKAT 1170
             +C D   + ++ + CGH  C +C+   +T+ ++   Q    N   + S+   +  ++  
Sbjct: 747  SLCMDVVAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERL 806

Query: 1171 LNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNH 1230
            L+ +L +R  G   P   +D+KL                     + + L K   N + N 
Sbjct: 807  LSYALFRRYSGMA-PIVDADNKL-----------------RTENISELLPKQYSNILENR 848

Query: 1231 SLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKM 1290
             +       +    D         ++   +  ++I  K   D I       ++FSQ+   
Sbjct: 849  QM------GMKIFTDPKHWTTSTKIEKALNAVKEIIKKQPTDKI-------LIFSQFVSF 895

Query: 1291 LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1350
            L+L     +   I+Y    G +S   R++A+ +F   P V V+++SLKA ++GLN+  A 
Sbjct: 896  LELFTVPFRQEGIKYLMYTGGLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCAN 955

Query: 1351 HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF 1410
            HV++LD +WNP  E+QA+DRAHRIGQ +PV++LR+   NT+E+R+LALQ +KRE++ SA 
Sbjct: 956  HVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQDRKRELIDSAL 1015

Query: 1411 GEDETGGQQTRLTVDDLNYLF 1431
            GE +   + +RL   +L++LF
Sbjct: 1016 GE-KGLREISRLNTKELSFLF 1035

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp\|O13762\|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.12 PE=3 SV=1	Back alignment and function description

>sp\|P31244\|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1	Back alignment and function description

>sp\|P0CQ66\|RAD5_CRYNJ DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RAD5 PE=3 SV=1	Back alignment and function description

>sp\|P0CQ67\|RAD5_CRYNB DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1	Back alignment and function description

>sp\|P79051\|RHP16_SCHPO ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2	Back alignment and function description

>sp\|Q14527\|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2	Back alignment and function description

>sp\|Q5ACX1\|RAD5_CANAL DNA repair protein RAD5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RAD5 PE=3 SV=1	Back alignment and function description

>sp\|Q4WVM1\|RAD5_ASPFU DNA repair protein rad5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rad5 PE=3 SV=2	Back alignment and function description

>sp\|Q5BHD6\|RAD5_EMENI DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1433
359494872		1430	PREDICTED: uncharacterized protein LOC10	0.965	0.967	0.576	0.0
147852279		1435	hypothetical protein VITISV_020421 [Viti	0.947	0.946	0.559	0.0
356557665		1307	PREDICTED: uncharacterized protein LOC10	0.839	0.920	0.540	0.0
356546663		1337	PREDICTED: uncharacterized protein LOC10	0.891	0.955	0.502	0.0
356546266		1356	PREDICTED: uncharacterized protein LOC10	0.909	0.960	0.492	0.0
357446441		1314	Helicase-like transcription factor [Medi	0.895	0.976	0.491	0.0
449434350		1286	PREDICTED: ATP-dependent helicase ULS1-l	0.782	0.872	0.556	0.0
449479615		1239	PREDICTED: ATP-dependent helicase ULS1-l	0.782	0.905	0.555	0.0
296080908		1187	unnamed protein product [Vitis vinifera]	0.794	0.959	0.491	0.0
224116170		800	chromatin remodeling complex subunit [Po	0.551	0.987	0.733	0.0

>gi\|359494872\|ref\|XP_002263027.2\| PREDICTED: uncharacterized protein LOC100265351 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1496 bits (3874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 852/1478 (57%), Positives = 1022/1478 (69%), Gaps = 95/1478 (6%)

Query: 3    MADNAWLCGEVSAADEFADDQGLSIDMDTLLGILEEEKQPDRVKSSPGDLSLRNLSQDEL 62
            MADN W   + S  +  ADD+ LSID+++   IL E+  PD ++SSP D   +N+SQDE 
Sbjct: 1    MADNNW---DFSFNEFSADDEELSIDLESFYSILGED--PDPMQSSPEDFPFKNVSQDES 55

Query: 63   VQDVGSHSNLQ----LQSGFKGDMRDIATYPLYGLEISGA---ESGGLGDSS--SQLE-- 111
              D G H N Q     + G    + D      +  E S +    S GL +S+  S +E  
Sbjct: 56   APDFGHHDNSQPHGFQELGRASSLGDEFLRHSFNSEASHSITRGSDGLFESAGNSIIECA 115

Query: 112  --PTEQKCSPLQTCSASFSDWFNQNSG--TCCPESVGISQ--------------FETPGC 153
              P+    SP+++ S S +DW +  SG  TCC E  G+SQ              +E P C
Sbjct: 116  KLPSAHAGSPVRSGSGSLNDWISHVSGQETCCKERSGVSQDALSYNRVDSKEIQYEIPNC 175

Query: 154  STASSFSEGDGYHFLDHRNTLDFGVLGAKAGIRFGHVGSHIDSRSVDASPSSITENFDER 213
            STA SF+ G+  +  D+ N LD   L      +F H+G  I S    AS S +TEN D  
Sbjct: 176  STAFSFAAGNSNYASDYTNGLDLNHLNGDTEAQFKHMGVEIHSEY--ASNSMVTENSDIG 233

Query: 214  YGHYGASIGNRLGSSVPEGNL-CTYVDVPYTDAEVSSHNVASTDSTICHGSEIISDD-DY 271
             G Y  +I    G  V  G   CT + +   DA++SSH+V  T+S+IC   +++ ++ + 
Sbjct: 234  LGSYEPAIEKSTGDLVTGGKYSCTSMTISLRDADISSHDVNHTESSICQIPDVVYENSED 293

Query: 272  YSAMPCYINTGDTIFGDPSS------FNFQHLLSSEETATKPKDEEGEFTTEIACSSSGL 325
            YSA+   ++   ++F DPSS      F+ Q + SSEE     KDE  E + E  C +S +
Sbjct: 294  YSAVQYCLSADGSLFSDPSSQYMPDCFDLQFMPSSEEMLINMKDENEELSAENTCLNSKM 353

Query: 326  VLNAQGGPGKGSMLKVPAIDYLDAK---RQCEDSKNGLPIYGNSLSNITLG--DGKRSAQ 380
             L+        S ++    +Y D K      E S    P  GNS SN   G  D  RS Q
Sbjct: 354  NLSQDARAS--SFVQKGLNNYSDVKGLNFNHEGSNYVSPTSGNSSSNAGYGSNDDIRSIQ 411

Query: 381  PCTYSHSHSSRTKQMVFAKDEGNDDLFPCWSTVSDSVEPIDEAVGRNSSYHDGCNSFPFK 440
              T S S+ S  ++ +  KDE  D+L      +    E +DEAV    S       F  K
Sbjct: 412  LSTCSQSYMSNKRRAICIKDERKDELVA--PGICQPNEVVDEAVNDRFSLGVDARVFADK 469

Query: 441  DSGQSFIGLSPSLLSQNQVVHAKEEHEDLILESKRARFCQEICDGSSSRSPIDGRHLSLN 500
            +S Q      P + S+  +  AK+E+EDL L SKR R CQ I D  S RS   G  L   
Sbjct: 470  NSRQMLSCFPPFISSKKNLFDAKDENEDLYLASKRPRHCQVIGDELSGRSQSGGGPLD-- 527

Query: 501  LNGSRQYFPYAQPSTLNKKELDGVKEDMEAE-IKTRSMASHLLKLSPESIQSNSSDCKSH 559
               S Q  P  + ST++ K+LD +K++ E + I+ +SM S+L K+SPESIQSNS D +SH
Sbjct: 528  -TVSEQLIPSVKQSTVSNKQLDYIKDEKEGKLIQPKSMGSYLSKVSPESIQSNSLDHRSH 586

Query: 560  VDDEPDICILEDISQPARSNQSLVLGKTLSMNRSACSNHSVALGKPVVTSQHSSYSDYPG 619
            +DD+ DICILEDIS+P RSN SL+LGK+L                  V++Q   YSD   
Sbjct: 587  IDDDTDICILEDISEPVRSNSSLLLGKSL------------------VSTQR--YSD--- 623

Query: 620  YPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRHQRIALSWMV 679
               +  TG+ GM+++ +DERLI +VA+Q +SQP +EAS PDGVL VPLLRHQRIALSWMV
Sbjct: 624  --SLHNTGVVGMRNRTNDERLIFRVALQDLSQPKSEASPPDGVLTVPLLRHQRIALSWMV 681

Query: 680  QKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRT--EDDNKRQLETLNLDEEDN 737
            QKET+SLHCSGGILADDQGLGKT+STIALILKERP S R   ED  + +LETLNLDE+D+
Sbjct: 682  QKETASLHCSGGILADDQGLGKTVSTIALILKERPTSSRACQEDMKQSELETLNLDEDDD 741

Query: 738  GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELR 797
              +V  LD  KQ +D C V+ +GSS K  N   Q KGRPAAGTLVVCPTSVLRQWAEELR
Sbjct: 742  --KVPELDGTKQAADSCEVMSHGSSMKKENAFVQGKGRPAAGTLVVCPTSVLRQWAEELR 799

Query: 798  NKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKI 857
            +KVTSK +LSVLVYHGS+RTKDPCELA++DVV+TTYSIVSMEVPKQPL DK+DEE K+K 
Sbjct: 800  SKVTSKANLSVLVYHGSNRTKDPCELARYDVVLTTYSIVSMEVPKQPLVDKDDEE-KVKP 858

Query: 858  EGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQS 917
            E   + P   SS+KKRK PPSSD+K  K KK  DG LL+ VA PLA+VGWFRVVLDEAQS
Sbjct: 859  EAH-VSPTELSSNKKRKYPPSSDKKCLKDKKAMDGALLESVARPLARVGWFRVVLDEAQS 917

Query: 918  IKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVP 977
            IKNHRTQVARACWGLRAKRRWCLSGTPIQNA+DDLYSYFRFLRYDP+AVYKSFCS IKVP
Sbjct: 918  IKNHRTQVARACWGLRAKRRWCLSGTPIQNAVDDLYSYFRFLRYDPYAVYKSFCSTIKVP 977

Query: 978  ISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1037
            I++NP  GY+KLQAVLKTIMLRRTKGTLLDGEPII LPPK + LK+VDF+ EERDFYS+L
Sbjct: 978  ITRNPTNGYRKLQAVLKTIMLRRTKGTLLDGEPIITLPPKSVELKKVDFSKEERDFYSRL 1037

Query: 1038 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKL 1097
            E +SR QF+ YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKG++SNS+ RSSVEMAKKL
Sbjct: 1038 EADSRAQFEVYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGYNSNSVWRSSVEMAKKL 1097

Query: 1098 PQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK 1157
             +E+Q+YLLNCLE SLAICGICNDPPEDAVVSICGHVFCNQCICE LT+D+NQCP+ NCK
Sbjct: 1098 SREKQIYLLNCLEGSLAICGICNDPPEDAVVSICGHVFCNQCICEHLTSDENQCPSTNCK 1157

Query: 1158 IRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEA--PSCEGVWYNSSKIKAALEV 1215
            ++L++SSVFSKATL +SLS   P Q+I    S S+LVEA  P  E   Y+SSKI+AALEV
Sbjct: 1158 VQLNVSSVFSKATLKSSLSDL-PVQDISHHCSGSELVEAHDPCPESRLYDSSKIRAALEV 1216

Query: 1216 LQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIK 1275
            LQSL+KPR  T+ N SL+ S N +     + +D H    L    DE   +  K SI  + 
Sbjct: 1217 LQSLSKPRDCTLGNSSLKSS-NETTSGLENLSDSHSEGLLKETCDEKNVVLDKGSITVV- 1274

Query: 1276 LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1335
              GEKAIVFSQWT+MLDLLE+ LK+SSIQYRRLDGTMSV ARDKAVKDFNTLPEVSVMIM
Sbjct: 1275 --GEKAIVFSQWTRMLDLLESCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIM 1332

Query: 1336 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRI 1395
            SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPV+VLRLTVK+TVEDRI
Sbjct: 1333 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRI 1392

Query: 1396 LALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1433
            LALQQKKREMVASAFGEDETG +QTRLTVDDL YLFMV
Sbjct: 1393 LALQQKKREMVASAFGEDETGSRQTRLTVDDLKYLFMV 1430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147852279\|emb\|CAN82215.1\| hypothetical protein VITISV_020421 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356557665\|ref\|XP_003547135.1\| PREDICTED: uncharacterized protein LOC100805307 [Glycine max]	Back alignment and taxonomy information

>gi\|356546663\|ref\|XP_003541743.1\| PREDICTED: uncharacterized protein LOC100792901 [Glycine max]	Back alignment and taxonomy information

>gi\|356546266\|ref\|XP_003541550.1\| PREDICTED: uncharacterized protein LOC100802436 [Glycine max]	Back alignment and taxonomy information

>gi\|357446441\|ref\|XP_003593498.1\| Helicase-like transcription factor [Medicago truncatula] gi\|355482546\|gb\|AES63749.1\| Helicase-like transcription factor [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449434350\|ref\|XP_004134959.1\| PREDICTED: ATP-dependent helicase ULS1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449479615\|ref\|XP_004155652.1\| PREDICTED: ATP-dependent helicase ULS1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|296080908\|emb\|CBI18752.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224116170\|ref\|XP_002317230.1\| chromatin remodeling complex subunit [Populus trichocarpa] gi\|222860295\|gb\|EEE97842.1\| chromatin remodeling complex subunit [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1433
TAIR\|locus:2008470		1280	EDA16 "embryo sac development	0.402	0.450	0.525	8.6e-250
TAIR\|locus:2008096		981	AT1G50410 [Arabidopsis thalian	0.558	0.816	0.560	3.3e-230
TAIR\|locus:2095360		1047	AT3G20010 [Arabidopsis thalian	0.324	0.444	0.530	1.7e-220
TAIR\|locus:2089318		638	AT3G16600 [Arabidopsis thalian	0.078	0.175	0.654	2.1e-138
POMBASE\|SPBC23E6.02		1040	rrp2 "ATP-dependent DNA helica	0.203	0.279	0.342	3.2e-90
ASPGD\|ASPL0000030172		1184	AN5483 [Emericella nidulans (t	0.165	0.200	0.380	2.9e-86
TAIR\|locus:2158357		1277	AT5G43530 [Arabidopsis thalian	0.184	0.207	0.339	2.1e-84
ZFIN\|ZDB-GENE-030131-3306		942	hltf "helicase-like transcript	0.180	0.273	0.349	1.4e-82
TAIR\|locus:2207175		833	AT1G05120 [Arabidopsis thalian	0.104	0.180	0.468	2.7e-81
DICTYBASE\|DDB_G0272082		1838	DDB_G0272082 "CHR group protei	0.132	0.103	0.408	1.7e-80

TAIR\|locus:2008470 EDA16 "embryo sac development arrest 16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1442 (512.7 bits), Expect = 8.6e-250, Sum P(5) = 8.6e-250
 Identities = 324/616 (52%), Positives = 413/616 (67%)

Query:   592 RSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQ 651
             +SA  +  +A+  PVV+S++S+ S             GG+K +++ E +I Q A+Q ++Q
Sbjct:   488 QSAIPHRPLAMKMPVVSSEYSTVSHN-------FNQSGGLKLQSNKENMIFQAALQDLTQ 540

Query:   652 PNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 711
             PN+EA  PDGVL VPLLRHQRIALSWM QKETS   CSGGILADDQGLGKT+STIALILK
Sbjct:   541 PNSEAILPDGVLTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILK 600

Query:   712 ERP-PSFRTEDDNKRQLETLNLDE-EDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 769
             ER  P+   E+  K+++  L  +  E   ++ +G     +  ++ +++ N +     + V
Sbjct:   601 ERSKPAQACEESTKKEIFDLESETGECAPLKPSGRS---KHFEHSQLLSNENKVGG-DSV 656

Query:   770 EQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVV 829
              +  GRPAAGTLVVCPTSV+RQWA+EL  KVTS+ +LSVLVYHGSSRTKDP ELAK+DVV
Sbjct:   657 GKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVV 716

Query:   830 ITTYSIVSMEVPKQPLGXXXXXXXXXXXXXXXLPPMYXXXXXXXXXXXXXXXXGSKQKKG 889
             +TT+SIVSMEVPKQPL                    +                GSK+KK 
Sbjct:   717 VTTFSIVSMEVPKQPLVDDEDEEKDGVHDGGTAATGFCSNKKRKYPPDSKKK-GSKKKK- 774

Query:   890 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 949
                  ++ ++GPLAKV WFRVVLDEAQSIKN++TQVARACWGLRAKRRWCLSGTPIQN+I
Sbjct:   775 -----VEFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTPIQNSI 829

Query:   950 DDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGE 1009
             DDLYSYFRFL+YDP++ Y  FCS IK PI++NPVKGY+KLQA+LKT+MLRRTKG+LLDG+
Sbjct:   830 DDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQKLQAILKTVMLRRTKGSLLDGK 889

Query:  1010 PIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLR 1069
             PII+LPPK I L++VDFT EERDFYS+LE  SR QF+EYA AGTVKQNYVNILLMLLRLR
Sbjct:   890 PIISLPPKSIELRKVDFTVEERDFYSKLEAESRTQFREYAEAGTVKQNYVNILLMLLRLR 949

Query:  1070 QACDHPLLVKGFDSNSLLRSSVEMAKK-LPQERQMYLLN-CLEAS----LAICG--ICND 1121
             QACDHPLLV G + +    SSV +AKK +  +  + +   C +A      ++CG   C  
Sbjct:   950 QACDHPLLVNG-EYSFTWESSVGLAKKQIQSDASLAICGICNDAPEDAVASVCGHVFCKQ 1008

Query:  1122 PPEDAVVSICGHVFCNQCICE-RLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQP 1180
                + +     H  C    C  RLT       TR   +  ++  +  +AT +NSLS    
Sbjct:  1009 CIYERLTGDSNH--CPFANCNVRLTISSLSSKTR---LDDAMPDMQERAT-SNSLSPCSD 1062

Query:  1181 GQEIPTDYSDSKLVEA 1196
              +++P  Y  SK+  A
Sbjct:  1063 -EDLP--YGSSKIKAA 1075

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0004386 "helicase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009553 "embryo sac development" evidence=IMP

TAIR\|locus:2008096 AT1G50410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2095360 AT3G20010 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2089318 AT3G16600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPBC23E6.02 rrp2 "ATP-dependent DNA helicase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000030172 AN5483 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TAIR\|locus:2158357 AT5G43530 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3306 hltf "helicase-like transcription factor" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

TAIR\|locus:2207175 AT1G05120 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0272082 DDB_G0272082 "CHR group protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	LOW CONFIDENCE prediction!
3rd Layer	3.6.4	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CHR935	chromatin remodeling complex subunit (800 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1433
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	1e-54
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	8e-36
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	4e-29
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	7e-24
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	2e-21
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	3e-17
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	5e-17
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	2e-10
smart00184		40	smart00184, RING, Ring finger	3e-08
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	8e-08
cd00162		45	cd00162, RING, RING-finger (Really Interesting New	1e-07
pfam13923		45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-07
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	7e-07
pfam00097		40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-04
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	4e-04
pfam13639		46	pfam13639, zf-RING_2, Ring finger domain	5e-04
COG5574		271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	0.004

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

 Score =  192 bits (490), Expect = 1e-54
 Identities = 109/425 (25%), Positives = 162/425 (38%), Gaps = 140/425 (32%)

Query: 670  HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLET 729
            +Q   ++W++  E++ L   GGILAD+ GLGKT+ TIAL+                    
Sbjct: 1    YQLEGVNWLISLESNGL---GGILADEMGLGKTLQTIALLATY----------------- 40

Query: 730  LNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL 789
              L E  +     G  LV        V P                            S L
Sbjct: 41   --LKEGKD---RRGPTLV--------VCP---------------------------LSTL 60

Query: 790  RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCE------LAKFDVVITTYSIVSMEVPKQ 843
              W  E         +L V+VYHG  R +          L  +DVVITTY ++       
Sbjct: 61   HNWLNEFE---KWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVL------- 110

Query: 844  PLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 903
               DK+                                                    L 
Sbjct: 111  -RKDKKLLSL------------------------------------------------LN 121

Query: 904  KVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 963
            KV W RVVLDEA  +KN ++++ +A   L+ + R  L+GTPIQN +++L++   FLR  P
Sbjct: 122  KVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPGP 181

Query: 964  FAVYKSFCSMIKVPI-----SKNPV-----KGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 1013
            F  +K F     +PI     +KN       +G  +L  +LK  +LRRTK  +        
Sbjct: 182  FGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDVEKS----- 236

Query: 1014 LPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACD 1073
            LPPK   +   + +DE+R  Y +L    R         G       ++L ++++LR+ C+
Sbjct: 237  LPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICN 296

Query: 1074 HPLLV 1078
            HP L 
Sbjct: 297  HPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>gnl\|CDD\|214546 smart00184, RING, Ring finger	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>gnl\|CDD\|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|222279 pfam13639, zf-RING_2, Ring finger domain	Back alignment and domain information

>gnl\|CDD\|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1433
KOG1002		791	consensus Nucleotide excision repair protein RAD16	100.0
KOG4439		901	consensus RNA polymerase II transcription terminat	100.0
KOG0385		971	consensus Chromatin remodeling complex WSTF-ISWI,	100.0
KOG0387		923	consensus Transcription-coupled repair protein CSB	100.0
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	100.0
KOG0384		1373	consensus Chromodomain-helicase DNA-binding protei	100.0
KOG1001		674	consensus Helicase-like transcription factor HLTF/	100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0389		941	consensus SNF2 family DNA-dependent ATPase [Chroma	100.0
KOG0391		1958	consensus SNF2 family DNA-dependent ATPase [Genera	100.0
KOG0388		1185	consensus SNF2 family DNA-dependent ATPase [Replic	100.0
KOG0390		776	consensus DNA repair protein, SNF2 family [Replica	100.0
KOG0386		1157	consensus Chromatin remodeling complex SWI/SNF, co	100.0
KOG1015		1567	consensus Transcription regulator XNP/ATRX, DEAD-b	100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1016		1387	consensus Predicted DNA helicase, DEAD-box superfa	100.0
KOG1000		689	consensus Chromatin remodeling protein HARP/SMARCA	100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG0298		1394	consensus DEAD box-containing helicase-like transc	100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
KOG0383		696	consensus Predicted helicase [General function pre	100.0
PRK13766		773	Hef nuclease; Provisional	99.97
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.93
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.92
PHA02558		501	uvsW UvsW helicase; Provisional	99.91
KOG1123		776	consensus RNA polymerase II transcription initiati	99.85
PTZ00110		545	helicase; Provisional	99.81
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.81
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.79
KOG0354		746	consensus DEAD-box like helicase [General function	99.79
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.79
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.78
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.78
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.77
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.76
PTZ00424		401	helicase 45; Provisional	99.76
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.76
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.76
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.75
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.75
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.72
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.72
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.7
PRK10689		1147	transcription-repair coupling factor; Provisional	99.69
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.69
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.68
KOG0331		519	consensus ATP-dependent RNA helicase [RNA processi	99.63
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.6
PRK13767		876	ATP-dependent helicase; Provisional	99.57
PRK02362		737	ski2-like helicase; Provisional	99.56
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.55
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.52
PRK01172		674	ski2-like helicase; Provisional	99.51
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.51
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.5
PRK00254		720	ski2-like helicase; Provisional	99.48
KOG0330		476	consensus ATP-dependent RNA helicase [RNA processi	99.44
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.44
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.44
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.42
KOG0328		400	consensus Predicted ATP-dependent RNA helicase FAL	99.41
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.4
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.39
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.39
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.39
PRK05580		679	primosome assembly protein PriA; Validated	99.35
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.34
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.34
COG4096		875	HsdR Type I site-specific restriction-modification	99.32
KOG0350		620	consensus DEAD-box ATP-dependent RNA helicase [RNA	99.31
PHA02653		675	RNA helicase NPH-II; Provisional	99.29
KOG0333		673	consensus U5 snRNP-like RNA helicase subunit [RNA	99.29
PRK09401		1176	reverse gyrase; Reviewed	99.27
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.26
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.24
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.24
KOG0335		482	consensus ATP-dependent RNA helicase [RNA processi	99.24
KOG4284		980	consensus DEAD box protein [Transcription]	99.21
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.19
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.19
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.18
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	99.17
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.13
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.12
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.11
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.09
COG1205		851	Distinct helicase family with a unique C-terminal	99.08
KOG0343		758	consensus RNA Helicase [RNA processing and modific	99.07
KOG0342		543	consensus ATP-dependent RNA helicase pitchoune [RN	99.06
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.06
KOG0348		708	consensus ATP-dependent RNA helicase [RNA processi	99.06
PRK14701		1638	reverse gyrase; Provisional	99.03
COG1202		830	Superfamily II helicase, archaea-specific [General	99.03
COG1204		766	Superfamily II helicase [General function predicti	99.02
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.01
PRK09694		878	helicase Cas3; Provisional	99.0
PRK12904		830	preprotein translocase subunit SecA; Reviewed	98.98
KOG0338		691	consensus ATP-dependent RNA helicase [RNA processi	98.97
KOG0339		731	consensus ATP-dependent RNA helicase [RNA processi	98.97
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	98.96
PRK13107		908	preprotein translocase subunit SecA; Reviewed	98.9
KOG0345		567	consensus ATP-dependent RNA helicase [RNA processi	98.9
COG4889		1518	Predicted helicase [General function prediction on	98.88
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	98.83
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	98.8
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	98.66
KOG0332		477	consensus ATP-dependent RNA helicase [RNA processi	98.61
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	98.58
KOG0334		997	consensus RNA helicase [RNA processing and modific	98.56
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	98.56
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	98.55
KOG0341		610	consensus DEAD-box protein abstrakt [RNA processin	98.54
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.52
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.51
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	98.49
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	98.47
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	98.38
KOG1513		1300	consensus Nuclear helicase MOP-3/SNO (DEAD-box sup	98.38
PRK05298		652	excinuclease ABC subunit B; Provisional	98.37
KOG0326		459	consensus ATP-dependent RNA helicase [RNA processi	98.31
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	98.27
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	98.27
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	98.26
PF13871		278	Helicase_C_4: Helicase_C-like	98.23
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	98.18
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.16
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.13
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.05
KOG0327		397	consensus Translation initiation factor 4F, helica	98.02
KOG0344		593	consensus ATP-dependent RNA helicase [RNA processi	97.96
COG1198		730	PriA Primosomal protein N' (replication factor Y)	97.95
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	97.74
KOG0947		1248	consensus Cytoplasmic exosomal RNA helicase SKI2,	97.67
KOG0347		731	consensus RNA helicase [RNA processing and modific	97.54
KOG0953		700	consensus Mitochondrial RNA helicase SUV3, DEAD-bo	97.46
KOG0948		1041	consensus Nuclear exosomal RNA helicase MTR4, DEAD	97.45
KOG0823		230	consensus Predicted E3 ubiquitin ligase [Posttrans	97.42
KOG0349		725	consensus Putative DEAD-box RNA helicase DDX1 [RNA	97.42
KOG0949		1330	consensus Predicted helicase, DEAD-box superfamily	97.39
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	97.35
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	97.33
KOG0353		695	consensus ATP-dependent DNA helicase [General func	97.32
CHL00122		870	secA preprotein translocase subunit SecA; Validate	97.23
KOG0346		569	consensus RNA helicase [RNA processing and modific	97.2
KOG0351		941	consensus ATP-dependent DNA helicase [Replication,	97.2
PRK15483		986	type III restriction-modification system StyLTI en	97.17
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.16
PLN03208		193	E3 ubiquitin-protein ligase RMA2; Provisional	97.12
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.01
COG0610		962	Type I site-specific restriction-modification syst	96.93
smart00504		63	Ubox Modified RING finger domain. Modified RING fi	96.9
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	96.88
KOG0317		293	consensus Predicted E3 ubiquitin ligase, integral	96.82
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	96.82
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	96.81
KOG0320		187	consensus Predicted E3 ubiquitin ligase [Posttrans	96.8
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	96.35
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	96.28
KOG0337		529	consensus ATP-dependent RNA helicase [RNA processi	96.25
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.21
KOG0352		641	consensus ATP-dependent DNA helicase [Replication,	96.17
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	96.03
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	96.01
KOG2164		513	consensus Predicted E3 ubiquitin ligase [Posttrans	95.96
TIGR00599		397	rad18 DNA repair protein rad18. This family is bas	95.78
PHA02929		238	N1R/p28-like protein; Provisional	95.68
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	95.65
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	95.31
COG5574		271	PEX10 RING-finger-containing E3 ubiquitin ligase [	95.11
KOG1802		935	consensus RNA helicase nonsense mRNA reducing fact	95.06
PF04564		73	U-box: U-box domain; InterPro: IPR003613 Quality c	94.91
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	94.62
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	94.57
TIGR00570		309	cdk7 CDK-activating kinase assembly factor MAT1. A	94.42
PF14634		44	zf-RING_5: zinc-RING finger domain	94.3
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	94.27
PHA02926		242	zinc finger-like protein; Provisional	94.26
PF11789		57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	94.13
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	94.03
PRK10536		262	hypothetical protein; Provisional	93.57
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	93.56
KOG0287		442	consensus Postreplication repair protein RAD18 [Re	93.24
COG3587		985	Restriction endonuclease [Defense mechanisms]	93.14
COG5432		391	RAD18 RING-finger-containing E3 ubiquitin ligase [	92.61
PF14835		65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	92.43
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	92.33
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	91.74
TIGR00376		637	DNA helicase, putative. The gene product may repre	91.7
KOG1132		945	consensus Helicase of the DEAD superfamily [Replic	90.95
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	90.88
KOG0824		324	consensus Predicted E3 ubiquitin ligase [Posttrans	90.29
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	90.19
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	89.85
KOG4172		62	consensus Predicted E3 ubiquitin ligase [Posttrans	89.26
COG5220		314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	89.15
KOG0311		381	consensus Predicted E3 ubiquitin ligase [Posttrans	89.09
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	89.06
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	89.02
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	88.89
PRK14873		665	primosome assembly protein PriA; Provisional	88.08
KOG0347		731	consensus RNA helicase [RNA processing and modific	87.82
COG5222		427	Uncharacterized conserved protein, contains RING Z	87.67
KOG2879		298	consensus Predicted E3 ubiquitin ligase [Posttrans	87.62
COG5152		259	Uncharacterized conserved protein, contains RING a	87.29
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	86.54
KOG4150		1034	consensus Predicted ATP-dependent RNA helicase [RN	86.3
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	86.18
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	85.36
KOG0340		442	consensus ATP-dependent RNA helicase [RNA processi	85.07
KOG2177		386	consensus Predicted E3 ubiquitin ligase [Posttrans	84.93
COG5540		374	RING-finger-containing ubiquitin ligase [Posttrans	84.54
PRK10875		615	recD exonuclease V subunit alpha; Provisional	84.49
KOG1803		649	consensus DNA helicase [Replication, recombination	84.04
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	83.8
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	82.85
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	82.09
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	81.99
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	81.46
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	81.36
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	81.22

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=4.7e-103  Score=887.68  Aligned_cols=576  Identities=41%  Similarity=0.709  Sum_probs=477.8

Q ss_pred             CCCCCCCcccCCchHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000539          656 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE  735 (1433)
Q Consensus       656 ~~~P~g~l~v~L~phQk~av~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~  735 (1433)
                      +.+|.+ +.++|+|||+++|+|+..+|.++.  .|||||||||+|||+|+|||++..-                      
T Consensus       175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~----------------------  229 (791)
T KOG1002|consen  175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV----------------------  229 (791)
T ss_pred             ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence            445666 578999999999999999999865  8999999999999999999998621                      


Q ss_pred             ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000539          736 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS  815 (1433)
Q Consensus       736 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~  815 (1433)
                                                              ..+|||||||.-.+.||.+||.+|..  +.++|++|||..
T Consensus       230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~  267 (791)
T KOG1002|consen  230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK  267 (791)
T ss_pred             ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence                                                    12469999999999999999998875  789999999999


Q ss_pred             CCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCccc
Q 000539          816 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL  895 (1433)
Q Consensus       816 r~k~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~ek~~~e~~~~~~~~~~~~~krk~~~~~~rk~~~~kk~~~~~~~  895 (1433)
                      |.+...++..||+|+|||.++.+++.++.               +++         +||        .     +     .
T Consensus       268 R~~nikel~~YDvVLTty~vvEs~yRk~~---------------~Gf---------rrK--------n-----g-----v  305 (791)
T KOG1002|consen  268 RDKNIKELMNYDVVLTTYAVVESVYRKQD---------------YGF---------RRK--------N-----G-----V  305 (791)
T ss_pred             ccCCHHHhhcCcEEEEecHHHHHHHHhcc---------------ccc---------ccc--------C-----C-----c
Confidence            99999999999999999999988765421               111         111        0     0     1


Q ss_pred             ccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChhHHHhhhhccccCCccchH-------
Q 000539          896 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK-------  968 (1433)
Q Consensus       896 e~~~~pL~~i~W~rVILDEAH~IKN~~T~~srAl~~L~a~~RwlLTGTPiqN~l~DLyslL~FL~p~pf~~~~-------  968 (1433)
                      +.-+++|+.+.|.||||||||.||++.+.+++|++.|++.+||||||||+||++.|||++++||+..||..+-       
T Consensus       306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~  385 (791)
T KOG1002|consen  306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA  385 (791)
T ss_pred             ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence            2235789999999999999999999999999999999999999999999999999999999999999985321       


Q ss_pred             ------------------------HHHhHhccCCCCCc-----hhhHHHHHHHHhhhhheeccccccCCCCccCCCCcEE
Q 000539          969 ------------------------SFCSMIKVPISKNP-----VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1019 (1433)
Q Consensus       969 ------------------------~F~~~i~~pi~~~~-----~~~~~~L~~lL~~~mLRRtK~dv~dg~pii~LPpk~e 1019 (1433)
                                              .|......||.+..     ..++...+.+|+.+|+||||-.-.+.   +.|||+.+
T Consensus       386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdD---LgLPPRiv  462 (791)
T KOG1002|consen  386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADD---LGLPPRIV  462 (791)
T ss_pred             ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccc---cCCCccce
Confidence                                    22333345665543     23456789999999999998654432   57999999


Q ss_pred             EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchH
Q 000539         1020 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1099 (1433)
Q Consensus      1020 ~vv~v~lS~eEre~Y~~L~~~~~~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~ 1099 (1433)
                      .+.+--|+.+|.++|+.|...++..|+.|...|.+..||++|+.+|.||||+++||.|+.....           ..++.
T Consensus       463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~-----------~n~~~  531 (791)
T KOG1002|consen  463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSAN-----------ANLPD  531 (791)
T ss_pred             eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhh-----------cCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999853211           11111


Q ss_pred             HHHHHHHHHhhhhcccccCCCCCCCcchhcccCcccchhhhhhhhcc----CCCCCCCccccccccccchhhhhhccccc
Q 000539         1100 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 1175 (1433)
Q Consensus      1100 e~~~~ll~~le~s~~~C~iC~~~~e~~vvt~CgHvfC~~Ci~e~l~~----~~~~Cp~~~C~~~l~~~~~f~~~~l~~~~ 1175 (1433)
                      +         ..+..+|.+|.++.++++.+.|.|.||.-|+.++...    ....||  .|...|+.+---... -...+
T Consensus       532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP--~C~i~LsiDlse~al-ek~~l  599 (791)
T KOG1002|consen  532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP--VCHIGLSIDLSEPAL-EKTDL  599 (791)
T ss_pred             c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc--cccccccccccchhh-hhcch
Confidence            1         2234789999999999999999999999999888644    234677  488777654111000 00000


Q ss_pred             ccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHHhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000539         1176 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1255 (1433)
Q Consensus      1176 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 1255 (1433)
                      .. ....         -+ -.......+..|.||++|.+.|.-+.+.+                                
T Consensus       600 ~~-Fk~s---------SI-lnRinm~~~qsSTKIEAL~EEl~~l~~rd--------------------------------  636 (791)
T KOG1002|consen  600 KG-FKAS---------SI-LNRINMDDWQSSTKIEALVEELYFLRERD--------------------------------  636 (791)
T ss_pred             hh-hhhH---------HH-hhhcchhhhcchhHHHHHHHHHHHHHHcc--------------------------------
Confidence            00 0000         00 00122345677899999999888754311                                


Q ss_pred             cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 000539         1256 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1335 (1433)
Q Consensus      1256 ~~l~~~~~~~~~~~~~~~i~~~~eKvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~ 1335 (1433)
                                           ...|.|||||||+|||+|+..|.+.|+.++.+.|+|++++|.+.|+.|.++++++||||
T Consensus       637 ---------------------~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv  695 (791)
T KOG1002|consen  637 ---------------------RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV  695 (791)
T ss_pred             ---------------------cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence                                 45799999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000539         1336 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1415 (1433)
Q Consensus      1336 StkaGg~GLNLq~An~VI~~Dp~WNPa~e~QAiGRahRIGQtr~V~VyrLi~kdTIEErIl~lq~kK~~l~~~~lg~d~~ 1415 (1433)
                      |++|||+.|||+.|++|++|||||||++|.||.+|+|||||.|||.|.||++++|||++|+++|++|.+|+++.+|+++.
T Consensus       696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~  775 (791)
T KOG1002|consen  696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE  775 (791)
T ss_pred             EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             CcccccCCHHHHHHhhc
Q 000539         1416 GGQQTRLTVDDLNYLFM 1432 (1433)
Q Consensus      1416 ~~~~~~lt~~DL~~LF~ 1432 (1433)
                        .+.+|+.+||++||.
T Consensus       776 --Ai~kLt~eDmqfLF~  790 (791)
T KOG1002|consen  776 --AISKLTEEDMQFLFN  790 (791)
T ss_pred             --HHHhcCHHHHHHHhc
Confidence              567999999999995

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]	Back alignment and domain information

>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]	Back alignment and domain information

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]	Back alignment and domain information

>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]	Back alignment and domain information

>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]	Back alignment and domain information

>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>KOG0383 consensus Predicted helicase [General function prediction only]	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>KOG0354 consensus DEAD-box like helicase [General function prediction only]	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG4284 consensus DEAD box protein [Transcription]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0343 consensus RNA Helicase [RNA processing and modification]	Back alignment and domain information

>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>KOG0334 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]	Back alignment and domain information

>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>KOG0346 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>smart00504 Ubox Modified RING finger domain	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR00599 rad18 DNA repair protein rad18	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]	Back alignment and domain information

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>PHA02926 zinc finger-like protein; Provisional	Back alignment and domain information

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]	Back alignment and domain information

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0347 consensus RNA helicase [RNA processing and modification]	Back alignment and domain information

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>KOG1803 consensus DNA helicase [Replication, recombination and repair]	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

Homologous Structure Templates