BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000540
(1433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + + G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 928 ET---FARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VG++ G+SGGQR+R+ +V L DE ++ LD + I+ +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 186
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
C + ++ T D II++ G+IV QG + +L ES+
Sbjct: 187 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + + G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 928 ET---FARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VG++ G+SGGQR+R+ +V L DE ++ LD + I+ +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 184
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
C + ++ T D II++ G+IV QG + +L ES+
Sbjct: 185 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + + G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 928 ET---FARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VG++ G+SGGQR+R+ +V L DE ++ LD + I+ +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 190
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
C + ++ T D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 18/208 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFAR 932
L G++ + G +TA++G +G GK+TL G + + G I + K Y +K R
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 933 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
S G Q+ + F +VY+ + + A ++LP + E RK + ++ ++ LK
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP---EDEIRKR-VDNALKRTGIEHLKDK 139
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTG 1048
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V + G
Sbjct: 140 -----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 1049 RTVVCTIHQPSIDIFEAF-DELFLMKRG 1075
T++ H IDI + D +F+MK G
Sbjct: 195 ITIIIATH--DIDIVPLYCDNVFVMKEG 220
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTA 377
D+ +S GQ+KRV ++V L +DE + GLD +I+ + + G
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGIT 196
Query: 378 VISLLQPAPETYNLFDDIILLSNGQIVYQG-PRELVL--EFFESMGFKCPKRKGVADFLQ 434
+I D++ ++ G+++ QG P+E+ E + + P+ + + L+
Sbjct: 197 IIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILK 256
Query: 435 E 435
E
Sbjct: 257 E 257
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D V+L+ ++ + + G + ++G +G+GK+TL ++ YI G + + G+
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 71
Query: 928 ET---FARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 72 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 130
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 131 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 175
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 176 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VG++ G+SGGQR+R+ +V L DE ++ LD + I+ +N+H
Sbjct: 132 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 186
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
C + ++ T D II++ G+IV QG + +L ES+
Sbjct: 187 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 40/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + + G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 928 ET---FARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ ++VG G +GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++MR + + + GRTV+ H+ S + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VG++ G+SGGQR+R+ +V L D+ ++ LD + I+ +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM----RNMHK 190
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
C + ++ T D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 19/162 (11%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQETFA 931
LN ++ + G AL+G SG+GK+TL+ +AG + T G I + K V+ P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPP--EIDSETRKMFIGEVMELVELKPLKQS 989
R G QN P +TVY+++ + LR P EID + R EV +++ + L
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-----EVAKMLHIDKL--- 126
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1031
L P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 127 LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGGQ++RV +V L +DE + LD+ ++ K+ + G + +
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR-LQKELGITTVYVTH 192
Query: 384 PAPETYNLFDDIILLSNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
E + D I ++ G+I+ G P E+ + PK K V FL
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEV---------YYKPKYKFVGGFL 234
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
+N ++ + G L+G SG GKTT + ++AG T G I G+ V+ P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
+ Q+ P +TVYE++ + ++ P+ + + R + E++++ EL L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 137
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 138 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGP 1083
+ ++ D + +M RG E+Y+ P
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 234
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGGQR+RV +V L MDE + LD+ + K+ + I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTH 201
Query: 384 PAPETYNLFDDIILLSNGQIVYQG-PRELVL 413
E + D I +++ GQ++ G P E+ L
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 232
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQETFA 931
+N ++ + G L+G SG GKTT + ++AG T G I G+ V+ P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
+ Q+ P +TVYE++ + ++ P+ + + R + E++++ EL L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LN 136
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGP 1083
+ ++ D + +M RG E+Y+ P
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGGQR+RV +V L MDE + LD+ + K+ + I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTH 200
Query: 384 PAPETYNLFDDIILLSNGQIVYQG-PRELVL 413
E + D I +++ GQ++ G P E+ L
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 45/301 (14%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGY------ITGNIKVS 921
K+V L+ V+ G ++G SGAGKTT M ++AG TG + N K+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 922 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEIDSETRKMFIGEVMEL 980
P+ ++ G Q P +T +E++ + +++ E E RK V E+
Sbjct: 77 VPPEDRKI-----GMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRK----RVEEV 124
Query: 981 VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIV 1037
++ + L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +
Sbjct: 125 AKILDIHHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGPLGRHSCH 1090
++ V++ + G T++ H P+ DIF D + ++ +G ++Y P+
Sbjct: 183 VKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
Query: 1091 LVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDL 1150
L+ + G + +G + VS S +G+ R E + +K +I+D
Sbjct: 240 LIGEINELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGI-------RPEDVKLSKDVIKDD 291
Query: 1151 S 1151
S
Sbjct: 292 S 292
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 16/187 (8%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L V+ F G + ++G +G+GKTTL+ +LAG G I + G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA---AGEIFLDGSPADPFLLRKN 82
Query: 934 SGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
GY QN TV E + +S L + +SE RK I +V+ELV L G
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFS--LEIMGLDESEMRKR-IKKVLELV-------GLSG 132
Query: 993 LPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
L LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 133 LAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 1051 VVCTIHQ 1057
++ H+
Sbjct: 193 IILVTHE 199
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 53/252 (21%)
Query: 167 ILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHNMDEFVPER 226
+LKDV+ + G++ +++G +G + +G D F+ +
Sbjct: 26 VLKDVNAEFETGKIYVVVGK----NGSGKTTLLKILAGLLAAAGEIFLDGSPADPFLLRK 81
Query: 227 TAAYISQH-DNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYM 285
Y+ Q+ + I TV E +AFS G+ +E+ +R K
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRIK-------------- 122
Query: 286 KAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALAL 345
KVL L + D + +SGGQ++R+ M+ L
Sbjct: 123 ------------------KVLELVGLSGLAAADPL--NLSGGQKQRLAIASMLARDTRFL 162
Query: 346 FMDEISTGLDSSTT---FQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402
+DE + LD + FQ++ K N G +I L+ E + D I+ +SNG
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESLK-----NEGKGII-LVTHELEYLDDMDFILHISNGT 216
Query: 403 IVYQGPRELVLE 414
I + G E +E
Sbjct: 217 IDFCGSWEEFVE 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 17/213 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGNIKVSGYPKKQETFA 931
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G +V+ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R G QN +TVY+++ + + P+ + + R V EL+ L+
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRFMRLESYAN 140
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1050
P LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 141 RFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083
V H + E D + ++ G E + P
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGGQ++RV + L DE +D+ ++ F + +H G + +
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL-RTFVRQVHDEMGVTSVFVTH 204
Query: 384 PAPETYNLFDDIILLSNGQIVYQGPRELVLE 414
E + D +++L G + G E V E
Sbjct: 205 DQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 45/301 (14%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGY------ITGNIKVS 921
K+V L+ V+ G ++G SGAGKTT M ++AG TG + N K+
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 922 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEIDSETRKMFIGEVMEL 980
P+ ++ G Q P +T +E++ + +++ E E RK V E+
Sbjct: 77 VPPEDRKI-----GMVFQTWALYPNLTAFENIAFPLTNMKMSKE---EIRK----RVEEV 124
Query: 981 VELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIV 1037
++ + L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +
Sbjct: 125 AKILDIHHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 1038 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGY-------EIYVGPLGRHSCH 1090
++ V++ + G T++ H P+ DIF D + ++ +G ++Y P+
Sbjct: 183 VKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
Query: 1091 LVSYFEAIPGVEKIKDGYNPATWMLEVSAPSQEVALGVDFSDIYKRSELYRRNKSLIEDL 1150
L+ + G + +G + VS S +G+ R E + +K +I+D
Sbjct: 240 LIGEINELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGI-------RPEDVKLSKDVIKDD 291
Query: 1151 S 1151
S
Sbjct: 292 S 292
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL 381
R +SGGQ++RV +V L +DE + LD+ K+ + G ++ +
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE-VQSRLGVTLLVV 197
Query: 382 LQPAPETYNLFDDIILLSNGQIVYQG-PREL 411
+ + + D + +L G++V G P +L
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 871 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GNIKVSGYPKKQ 927
K+ ++GVS + G AL+G SG GKTT + +LAG + T G I ++ V+ P K
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 928 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE---VMELVELK 984
R G QN P +TV+E++ + R + + E R + I + L++ K
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK 130
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
P + LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 131 P-----------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGGQ++RV +V L DE + LD++ I+ +++ G + +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRM-IMRAEIKHLQQELGITSVYVTH 192
Query: 384 PAPETYNLFDDIILLSNGQIV-YQGPRELVLEFFESMGFKCPKRKGVADFL 433
E + I + + G++V Y P E+ + PK VA F+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEV---------YDSPKNMFVASFI 234
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + + G+
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 69
Query: 928 ET---FARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 70 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 128
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 129 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VG++ G+SGGQR+R+ +V L DE ++ LD + I+ +N+H
Sbjct: 130 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 184
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
C + ++ T D II++ G+IV QG + +L ES+
Sbjct: 185 ICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 40/223 (17%)
Query: 870 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGNIKVSGYPKKQ 927
D V+L+ ++ + + G + ++G SG+GK+TL ++ YI G + + G+
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLAL 75
Query: 928 ET---FARISGYCEQNDI------------HSPFVTVYESLLYSAWLRLPPEIDSETRKM 972
R G Q+++ +P ++V E ++Y+A L + SE R+
Sbjct: 76 ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISELREG 134
Query: 973 FIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
+ ++VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 135 Y--------------NTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+ ++MR + + + GRTV+ I + + D + +M++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VG++ G+SGGQR+R+ +V L DE ++ LD + I+ +N+H
Sbjct: 136 NTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM----RNMHK 190
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESM 419
C + ++ T D II++ G+IV QG + +L ES+
Sbjct: 191 ICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 12/210 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNIKVSGYPKKQETFA 931
L V+ + G ++MG SG+GK+T+++++ + T G + NIK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 932 RIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
R G+ Q P +T E++ + + E R+ E +++ EL +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EE 136
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1048
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078
+TVV H I++ + + +K G E
Sbjct: 197 KTVVVVTH--DINVARFGERIIYLKDGEVE 224
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNIKVSGYPKKQETFA 931
L V+ + G ++MG SG+GK+T+++++ + T G + NIK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 932 RIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
R G+ Q P +T E++ + + E R+ E +++ EL +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL----EE 136
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1048
+ LS Q++R+ IA L NP II D+PT LD++ +M+ ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 1049 RTVVCTIHQPSIDIF 1063
+TVV H ++ F
Sbjct: 197 KTVVVVTHDINVARF 211
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927
S ++ +L G++ + G AL+G SG GK+T + ++ ++ + G + + G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRT 456
Query: 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
I G Q + T+ E++ Y EI+ ++ + +++L
Sbjct: 457 INVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLP 513
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 514 HQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DK 571
Query: 1045 VDTGRTVVCTIHQPSI----DIFEAFDELFLMKRGGYE 1078
GRT + H+ S D+ FD ++++G ++
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 934 S---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK-QS 989
G Q I ++ E++ Y R+ + R + + ++ P K +
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVS-YEEIVRAAKEANIHQFIDSLPDKYNT 1163
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
VG G LS Q++R+ IA LV P I+ +DE TS LD + +V + + GR
Sbjct: 1164 RVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGR 1221
Query: 1050 TVVCTIHQPS 1059
T + H+ S
Sbjct: 1222 TCIVIAHRLS 1231
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG--ISGGQRKRVTTGEMMV 339
DV M I +EAN D+ +K L DT+VG+ RG +SGGQ++R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 340 GPALALFMDEISTGLDSST 358
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T VGD+ + +SGGQ++R+ +V L +DE ++ LD+ + + +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE- 1219
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
G I + N D I+++ NG++ G + +L
Sbjct: 1220 --GRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 14/218 (6%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927
S ++ +L G++ + G AL+G SG GK+T + ++ ++ + G + + G +
Sbjct: 399 SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRT 456
Query: 928 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
I G Q + T+ E++ Y EI+ ++ + +++L
Sbjct: 457 INVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLP 513
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
+LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + +
Sbjct: 514 HQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DK 571
Query: 1045 VDTGRTVVCTIHQPSI----DIFEAFDELFLMKRGGYE 1078
GRT + H+ S D+ FD ++++G ++
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L G+S + G AL+G SG GK+T++ +L + + G++ + G KQ +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 934 S---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK-QS 989
G Q I ++ E++ Y R+ + R + + ++ P K +
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVS-YEEIVRAAKEANIHQFIDSLPDKYNT 1163
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
VG G LS Q++R+ IA LV P I+ +DE TS LD + +V + + GR
Sbjct: 1164 RVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGR 1221
Query: 1050 TVVCTIHQPS 1059
T + H+ S
Sbjct: 1222 TCIVIAHRLS 1231
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG--ISGGQRKRVTTGEMMV 339
DV M I +EAN D+ +K L DT+VG+ RG +SGGQ++R+ +V
Sbjct: 490 DVTMDEIEKAVKEANAY-DFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIAIARALV 542
Query: 340 GPALALFMDEISTGLDSST 358
L +DE ++ LD+ +
Sbjct: 543 RNPKILLLDEATSALDTES 561
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T VGD+ + +SGGQ++R+ +V L +DE ++ LD+ + + +
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE- 1219
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
G I + N D I+++ NG++ G + +L
Sbjct: 1220 --GRTCIVIAHRLSTIQNA-DLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSGYPKKQE 928
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
G Q P +TV ++ + P ++ R+ + MEL++ LK
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
T+V H+ E D + M GGY I G
Sbjct: 189 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 324 ISGGQRKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLL 382
+SGGQ +RV + + P + LF DE ++ LD ++++ KQ N G ++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 195
Query: 383 QPAPETYNLFDDIILLSNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 241
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 12/214 (5%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSGYPKKQE 928
L +L G++ R G + ++G SG+GK+T + ++L G I I +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
G Q P +TV ++ + P ++ R+ + MEL++ LK
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVG 1082
T+V H+ E D + M GGY I G
Sbjct: 210 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 324 ISGGQRKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLL 382
+SGGQ +RV + + P + LF DE ++ LD ++++ KQ N G ++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLF-DEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVT 216
Query: 383 QPAPETYNLFDDIILLSNGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ D ++ + G I+ +G P +L F P+ + FL +V
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDL---------FDRPQHERTKAFLSKV 262
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET----FARISGYCEQN 940
G +TAL+G SG+GK+T++ +L + +G I + G+ +Q ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE-LKPLKQ---SLVGLPGV 996
+ S ++ E++ Y A P + +E + + EV V ++ Q ++VG GV
Sbjct: 428 ILFS--CSIAENIAYGA--DDPSSVTAEEIQR-VAEVANAVAFIRNFPQGFNTVVGEKGV 482
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 483 L-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAH 540
Query: 1057 QPS 1059
+ S
Sbjct: 541 RLS 543
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
+TVVG++ + +SGGQ++R+ ++ L +DE ++ LD+ + +
Sbjct: 474 NTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 522
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKK 926
DD +L +S +P + A G SG GK+T+ +L + T G IT + G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT----IDGQPID 67
Query: 927 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMEL--- 980
E + G+ Q D T+ E+L Y ++ + + +V++L
Sbjct: 68 NISLENWRSQIGFVSQ-DSAIMAGTIRENLTYG--------LEGDYTDEDLWQVLDLAFA 118
Query: 981 ---VELKPLK-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
VE P + + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++
Sbjct: 119 RSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 1037 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
V + + +++ GRT + H+ S I +A D+++ +++G
Sbjct: 178 VQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQET----FARISGYCEQN 940
G +TAL+G SG+GK+T++ +L + +G I + G+ +Q ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE-LKPLKQ---SLVGLPGV 996
+ S ++ E++ Y A P + +E + + EV V ++ Q ++VG GV
Sbjct: 459 ILFS--CSIAENIAYGA--DDPSSVTAEEIQR-VAEVANAVAFIRNFPQGFNTVVGEKGV 513
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+ H
Sbjct: 514 L-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAH 571
Query: 1057 QPS 1059
S
Sbjct: 572 HLS 574
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 40/220 (18%)
Query: 148 FEGFLNYLHI---LPSRKQHLTILKDVSGIIKPGRLTLLLGPPXXXXXXXXXXXXXXXXX 204
F+G L + ++ P+R + + I +D S I G +T L+GP
Sbjct: 369 FQGALEFKNVHFAYPARPE-VPIFQDFSLSIPSGSVTALVGP---SGSGKSTVLSLLLRL 424
Query: 205 XXXVSGRVTYNGHNMDEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEM 262
SG ++ +GH++ + P R+ + + ++ E +A+ A
Sbjct: 425 YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA----------- 473
Query: 263 LTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIR 322
DP A E Q + + + +TVVG++ +
Sbjct: 474 --------------DDPS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
+SGGQ++R+ ++ L +DE ++ LD+ + +
Sbjct: 515 -LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 553
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 862 MKLQGVSD--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITG 916
++LQ V+ ++V+ ++ G +G SG GK+TL+ ++AG +T G G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
+++ P + R G Q+ P ++V E++ + L + R + E
Sbjct: 64 EKRMNDTPPAE----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
V++L L K LS QR+R+ I LVA PS+ +DEP S LDA A +
Sbjct: 120 VLQLAHLLDRKPK--------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRV 170
Query: 1037 VMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
MR R GRT++ H ++ D++ ++ G
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAG 210
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTA 377
D + +SGGQR+RV G +V +DE + LD++ Q+ +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRT 186
Query: 378 VISLLQPAPETYNLFDDIILLSNGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 862 MKLQGVSD--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITG 916
++LQ V+ ++V+ ++ G +G SG GK+TL+ ++AG +T G G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
+++ P + R G Q+ P ++V E++ + L + R + E
Sbjct: 64 EKRMNDTPPAE----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
V++L L K LS QR+R+ I LVA PS+ +DEP S LDA A +
Sbjct: 120 VLQLAHLLDRKPK--------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRV 170
Query: 1037 VMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
MR R GRT++ H ++ D++ ++ G
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAG 210
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTA 377
D + +SGGQR+RV G +V +DE + LD++ Q+ +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-RIEISRLHKRLGRT 186
Query: 378 VISLLQPAPETYNLFDDIILLSNGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 92/197 (46%), Gaps = 28/197 (14%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK----QET 929
+L G+S + PG AL+G SG GK+T++ +L + + G I + G K + T
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPEHT 1151
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
++I+ ++ + ++ E+++Y L P + + +V E L +
Sbjct: 1152 RSQIAIVSQEPTLFD--CSIAENIIYG----LDPS------SVTMAQVEEAARLANIHNF 1199
Query: 990 LVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
+ LP G G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1200 IAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 1041 VRNTVDTGRTVVCTIHQ 1057
+ + GRT + H+
Sbjct: 1260 L-DRAREGRTCIVIAHR 1275
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L G++ G AL+G SG GK+T++ +L + + G I + G
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDG----------- 479
Query: 934 SGYCEQNDIHSPF------VTVYESLLYSAWLRLPPEIDSE--TRKMFIGEVMELVELKP 985
+ DI+ F V E L++ + + E TR+ + K
Sbjct: 480 ---VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536
Query: 986 LK------QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
+K +LVG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV +
Sbjct: 537 IKTLPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 1040 TVRNTVDTGRTVVCTIHQPS 1059
+ + GRT + H+ S
Sbjct: 596 AL-DKAAKGRTTIIIAHRLS 614
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T+VGD + +SGGQ++R+ +V L +DE ++ LD+ + + +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK- 602
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
G I + N D II NGQ+V G ++
Sbjct: 603 --GRTTIIIAHRLSTIRNA-DLIISCKNGQVVEVGDHRALM 640
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
+T VGD + +SGGQ++R+ +V L +DE ++ LD+ + + +
Sbjct: 1208 ETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE- 1265
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
G I + N D I ++SNG I+ +G
Sbjct: 1266 --GRTCIVIAHRLNTVMNA-DCIAVVSNGTIIEKG 1297
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 862 MKLQGVSD--DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITG 916
++LQ V+ ++V+ ++ G +G SG GK+TL+ ++AG +T G G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 917 NIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976
+++ P + R G Q+ P ++V E++ + L + R + E
Sbjct: 64 EKRMNDTPPAE----RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 119
Query: 977 VMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1036
V++L L K LS QR+R+ I LVA PS+ +D+P S LDA A +
Sbjct: 120 VLQLAHLLDRKPK--------ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRV 170
Query: 1037 VMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
MR R GRT++ H ++ D++ ++ G
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAG 210
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTA 377
D + +SGGQR+RV G +V +D+ + LD++ Q+ +H G
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQM-RIEISRLHKRLGRT 186
Query: 378 VISLLQPAPETYNLFDDIILLSNGQIVYQG-PREL 411
+I + E L D I++L G++ G P EL
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 27/205 (13%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQ---ETFARISGYC 937
+ G L+G SG GKTT + ++AG + G I K+ P+K R
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 938 EQNDIHSPFVTVYESLLYSAWLRLPP--EIDSETRKMFIGEVMELVEL---KPLKQSLVG 992
Q+ P +TVY+++ + LR P EID R+ + E++ L EL KP +
Sbjct: 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE--VAELLGLTELLNRKPRE----- 139
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRT 1050
LS QR+R+ + +V P + MDEP S LDA+ + MR + G T
Sbjct: 140 ------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAELKKLQRQLGVT 192
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRG 1075
+ H ++ D + +M RG
Sbjct: 193 TIYVTHD-QVEAMTMGDRIAVMNRG 216
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 322 RGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISL 381
R +SGGQR+RV G +V MDE + LD+ ++ K+ + G I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGVTTIYV 196
Query: 382 LQPAPETYNLFDDIILLSNG 401
E + D I +++ G
Sbjct: 197 THDQVEAMTMGDRIAVMNRG 216
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 27/162 (16%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGNI-----KVSGYPKKQETFARI 933
+ G L+G SG GKTT + +AG T G YI N+ K P K+ A +
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL---KPLKQSL 990
Q+ P TVY+++ + LR P+ + + R + E + L EL KP +
Sbjct: 90 F----QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRE--- 142
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1032
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 143 --------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 28/204 (13%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ 927
+D++ +L ++ + G A +G+SG GK+TL++++ + +G I + G+ K
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKD 407
Query: 928 ETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK 984
+ G +Q++I TV E++L L P D E V+E ++
Sbjct: 408 FLTGSLRNQIGLVQQDNILFS-DTVKENIL----LGRPTATDEE--------VVEAAKMA 454
Query: 985 PLKQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1035
++ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +
Sbjct: 455 NAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESES 514
Query: 1036 IVMRTVRNTVDTGRTVVCTIHQPS 1059
I+ + + + RT + H+ S
Sbjct: 515 IIQEAL-DVLSKDRTTLIVAHRLS 537
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 41/207 (19%)
Query: 209 SGRVTYNGHNMDEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGTRYEMLTEL 266
SG++ +GHN+ +F+ R + Q DN + TV+E +
Sbjct: 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG---------------- 438
Query: 267 ARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRGISG 326
+P A E EA + + + ++ L DT VG+ ++ +SG
Sbjct: 439 ---------RP--------TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSG 480
Query: 327 GQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAP 386
GQ++R++ + + L +DE ++ LD + + ++ + + ++
Sbjct: 481 GQKQRLSIARIFLNNPPILILDEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRL 536
Query: 387 ETYNLFDDIILLSNGQIVYQGP-RELV 412
T D I+++ NG IV G REL+
Sbjct: 537 STITHADKIVVIENGHIVETGTHRELI 563
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYI-TGNIKVSGYPKKQETFA 931
L V+ + G ++ G SG+GK+T ++++ + T G + NIK + + T
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 932 RIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
R G+ Q P +T E++ + E R+ E ++ EL +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL----EE 136
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1048
+ LS Q++R+ IA L NP II DEPT LD++ + + ++ + G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 1049 RTVVCTIHQPSIDIFEAFDELFLMKRGGYE 1078
+TVV H I++ + + +K G E
Sbjct: 197 KTVVVVTH--DINVARFGERIIYLKDGEVE 224
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 104/219 (47%), Gaps = 19/219 (8%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L+ VS + G AL+G SG+GK+T+ ++ + +G+I + G+ + +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 935 GY---CEQNDIHSPFVTVYESLLYSAWLRLPPE-IDSETRKMFIGEVMELVELKPLK-QS 989
+ QN +H T+ ++ Y+A E I+ R+ ME +E P +
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQ---AHAMEFIENMPQGLDT 472
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
++G G S LS QR+R+ IA L+ + ++ +DE TS LD + + + + + +
Sbjct: 473 VIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQKNK 530
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHS 1088
TV+ H+ S E DE+ ++ G EI GRH+
Sbjct: 531 TVLVIAHRLS--TIEQADEILVVDEG--EII--ERGRHA 563
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
DTV+G+ +SGGQR+RV ++ A L +DE ++ LD+ + I + +
Sbjct: 471 DTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE-LQK 528
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQG 407
N VI+ T D+I+++ G+I+ +G
Sbjct: 529 NKTVLVIA---HRLSTIEQADEILVVDEGEIIERG 560
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 32/249 (12%)
Query: 831 SHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTAL 890
SH KK G+ + F + ++ P+Q + L ++ G AL
Sbjct: 9 SHEKKFGVNIEFSDVNFSY---------PKQTNHR--------TLKSINFFIPSGTTCAL 51
Query: 891 MGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGY---PKKQETFARISGYCEQNDIHSPFV 947
+G +G+GK+T+ +L G+IK+ G + + I G Q+ I
Sbjct: 52 VGHTGSGKSTIAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNET 108
Query: 948 TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLK-QSLVGLPGVSGLSTEQRKR 1006
Y ++LY E+ T+ ++ + +E P K ++VG G+ LS +R+R
Sbjct: 109 IKY-NILYGKLDATDEEVIKATKS---AQLYDFIEALPKKWDTIVGNKGMK-LSGGERQR 163
Query: 1007 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1066
+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ S +
Sbjct: 164 IAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS--TISSA 220
Query: 1067 DELFLMKRG 1075
+ + L+ +G
Sbjct: 221 ESIILLNKG 229
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 313 DTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
DT+VG++ ++ +SGG+R+R+ ++ + DE ++ LDS T + F++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY----LFQKAVED 200
Query: 373 NCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEF 415
+ ++ T + + IILL+ G+IV +G + +L+
Sbjct: 201 LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSGYPKKQETFA 931
LN VS G + ++G SGAGK+TL+ ++L G + +++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R + I F + ++ + LP E+D+ + V EL+ L L
Sbjct: 104 RR----QIGXIFQHFNLLSSRTVFGN-VALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1050
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++ G T
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLT 216
Query: 1051 VVCTIHQPSI 1060
++ H+ +
Sbjct: 217 ILLITHEXDV 226
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 318 DEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTA 377
D +SGGQ++RV + L D+ ++ LD +TT I+ K +I+ G
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 378 VISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
++ + + D + ++SNG+++ Q + V E F PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ---DTVSEVFSH-----PKTPLAQKFIQ 265
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 13/189 (6%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTGGYITGNIKVSGYPKKQETFA 931
+L G+S + + G +++G SG+GK+TL+ +L T G + K Y ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 932 ---RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R G+ Q P +T E+++ P+ +++ R GE + L EL L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKER----GEYL-LSELG-LGD 132
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
L P LS +++R+ IA L P ++F DEPT LD+ VM + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 1049 RTVVCTIHQ 1057
++V H+
Sbjct: 191 TSIVMVTHE 199
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEMIRG---ISGGQRKRVTTGE 336
++ V M + +EA +Y L LGL GD++ R +SGG+++RV
Sbjct: 102 NVIVPMLKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPYELSGGEQQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDII 396
+ + LF DE + LDS+ T ++++ F + IN G I ++ E L +
Sbjct: 154 ALANEPILLFADEPTGNLDSANTKRVMDIF---LKINEGGTSIVMVTHERELAELTHRTL 210
Query: 397 LLSNGQIV 404
+ +G++V
Sbjct: 211 EMKDGKVV 218
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSGYPKKQETFA 931
LN VS G + ++G SGAGK+TL+ ++L G + +++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R Q + + S + LP E+D+ + V EL+ L L
Sbjct: 81 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 135
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
P S LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 136 SYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGGQ++RV + L DE ++ LD +TT I+ K +I+ G ++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLTILLITH 199
Query: 384 PAPETYNLFDDIILLSNGQIVYQ 406
+ D + ++SNG+++ Q
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQ 222
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 36/222 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 915
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 916 GNIKV--SGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF 973
G ++ + P K+ T E N SP SL Y W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 974 IGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
+++E ++L L G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 26/204 (12%)
Query: 862 MKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVS 921
M+LQ V++ L +SG R G + L+G +GAGK+TL+ +AG +G G+I+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 922 GYPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978
G P + + +++ Y Q PF T W L +TR + +V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 979 ELVEL-KPLKQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 1032
+ L L +S L G QR RL V + ANP+ ++ +D+P + LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVA 167
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIH 1056
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 36/222 (16%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-----------------YIT 915
L+GVS + G +T ++G +G+GK+TL++V+ G + G Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 916 GNIKV--SGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF 973
G ++ + P K+ T E N SP SL Y W+ P+ + K F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPL----NSLFYKKWI---PKEEEMVEKAF 135
Query: 974 IGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1033
+++E ++L L G LS Q K + I L+ NP +I MD+P +G+
Sbjct: 136 --KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGL 188
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
A + V G T + H+ I + D L++M G
Sbjct: 189 AHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNIKV 920
VS + +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G +
Sbjct: 9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68
Query: 921 SGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF-IGEVM- 978
+ P+ + + Q + P V+ + L +A + ET F ++M
Sbjct: 69 ALSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLME 125
Query: 979 ELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
E + L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 126 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 185
Query: 1039 RTVRNTVDTGRTVVCTIH 1056
V + D R+ + H
Sbjct: 186 DGVNSLRDGKRSFIIVTH 203
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 862 MKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVS 921
M+LQ V++ L +SG R G + L+G +GAGK+TL+ +AG +G G+I+ +
Sbjct: 5 MQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 59
Query: 922 GYPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVM 978
G P + + +++ Y Q PF T W L +TR + +V
Sbjct: 60 GQPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVA 111
Query: 979 ELVEL-KPLKQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDAR 1032
+ L L +S L G QR RL V + ANP+ ++ +D+P LD
Sbjct: 112 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVA 167
Query: 1033 AAAIVMRTVRNTVDTGRTVVCTIH 1056
+ + + + G +V + H
Sbjct: 168 QQSALDKILSALSQQGLAIVMSSH 191
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Query: 867 VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK----TGGYI--TGNIKV 920
VS + +L G+S PG + A+MG +G+GK+TL LAGR+ TGG + G +
Sbjct: 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87
Query: 921 SGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF-IGEVM- 978
+ P+ + + Q + P V+ + L +A + ET F ++M
Sbjct: 88 ALSPEDRAGEGIFMAF--QYPVEIPGVS-NQFFLQTALNAVRSYRGQETLDRFDFQDLME 144
Query: 979 ELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1038
E + L + + L+ G S ++KR I V P + +DE SGLD A +V
Sbjct: 145 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 204
Query: 1039 RTVRNTVDTGRTVVCTIH 1056
V + D R+ + H
Sbjct: 205 DGVNSLRDGKRSFIIVTH 222
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L+GVS + G +T ++G +G+GK+TL++V+ G G + + A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELY 80
Query: 935 GYCEQNDIHSP----FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE-----LKP 985
Y +P +TV E+LL ++S K +I + E+VE L+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1045
LK S + LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1046 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
G T + H+ I + D L++M G
Sbjct: 201 AKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGNIKVSGYPKKQETFA 931
LN VS G + ++G SGAGK+TL+ ++L G + +++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
R Q + + S + LP E+D+ + V EL+ L L
Sbjct: 104 R-----RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 159 SYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLL 382
+SGGQ++RV + L D+ ++ LD +TT I+ K +I+ G ++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLTILLIT 221
Query: 383 QPAPETYNLFDDIILLSNGQIVYQ 406
+ D + ++SNG+++ Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQ 245
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 27/169 (15%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDV---LAGRKTGGYITGNIKVSGYPKKQETF 930
+L+GV+ + +PG L A++G +G+GK+TLM++ L + G + V K ++
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-KLKDLR 416
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSL 990
IS ++ + S T+ E+L W R D E++E ++ + +
Sbjct: 417 GHISAVPQETVLFSG--TIKENL---KWGREDATDD---------EIVEAAKIAQIHDFI 462
Query: 991 VGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+ LP G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 463 ISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 44/238 (18%)
Query: 840 LPFEPHSLTFDEVVY----------SVDMPQQMK----LQGVSDDKLVLLNGVSGAFRPG 885
LP E + DE+ + S D+ +MK ++ + D +LV+ NG + + G
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA---KEG 294
Query: 886 VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGNIKVSGYPKKQETFARISGYCEQNDIH 943
+ ++G +G GKTT +L G T G +T ++ Y K Q F G +Q +
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGTVQQYLEN 353
Query: 944 SPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQ 1003
+ ++L S+W F EV + + L L +S V+ LS +
Sbjct: 354 AS----KDALSTSSW--------------FFEEVTKRLNLHRLLES-----NVNDLSGGE 390
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSI 1060
++L IA L + +D+P+S LD IV + ++ + V I H SI
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSI 448
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 35/244 (14%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISG---YCEQ 939
+ + ++G +G GKTT++ +LAG + N KV K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 940 NDIHSPFVTVYESLLY----SAWLR-----LPPEIDSETRKMFIGEVMELVELKPLKQSL 990
+++S + + + Y S +L+ + +ID +K EV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1050
+ GL +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKY 189
Query: 1051 VVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHLVSYFEAIPGVEKIKDGYNP 1110
V+ H + + + +L + G +Y GR S + A G+ GY P
Sbjct: 190 VIVVDH--DLIVLDYLTDLIHIIYGESSVY----GRVSKS----YAARVGINNFLKGYLP 239
Query: 1111 ATWM 1114
A M
Sbjct: 240 AENM 243
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 863 KLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922
+LQ V++ L +SG R G + L+G +GAGK+TL+ AG +G G+I+ +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 923 YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
P + + +++ Y Q PF T W L +TR + +V
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 980 LVEL-KPLKQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1033
+ L L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIH 1056
+ + + + G +V + H
Sbjct: 169 QSALDKILSALCQQGLAIVXSSH 191
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 23/159 (14%)
Query: 890 LMGVSGAGKTTLMDVLAG--RKTGGYITGN-IKVSGYPKKQETFARISGYCEQNDIHSPF 946
L+G +GAGK+ ++++AG + G + N ++ P ++ R G+ Q+ P
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFPH 84
Query: 947 VTVYESLLYSAWLRLPPEIDSETRKMFIGE---VMELVELKPLKQSLVGLPGVSGLSTEQ 1003
++VY ++ Y LR ++ + R + E + L++ KP + LS +
Sbjct: 85 LSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGE 131
Query: 1004 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
R+R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQ 383
+SGG+R+RV +V L +DE + +D T ++ + + ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR-FVQREFDVPILHVTH 185
Query: 384 PAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
E L D++ ++ NG+IV +G + E F + K VA+FL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKGKLK---ELFSA------KNGEVAEFL 226
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1057
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 90/220 (40%), Gaps = 7/220 (3%)
Query: 868 SDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG---YP 924
S D +L GV+ G + ALMG +GAGK+TL +LAG G I + G
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71
Query: 925 KKQETFARISGYCE-QNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL 983
+ AR + Q + P VT+ L + +L E+ F +V + +EL
Sbjct: 72 LSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAE---FWTKVKKALEL 128
Query: 984 KPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+S + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 129 LDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA 188
Query: 1044 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083
+ H I + D++ +M G GP
Sbjct: 189 MRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228
Score = 37.0 bits (84), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLL 382
G SGG++KR +++V +DE +GLD + N G VI+
Sbjct: 143 GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202
Query: 383 QPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q Y D + ++ +G++V G EL LE E+ G++ K K
Sbjct: 203 QRIL-NYIQPDKVHVMMDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 863 KLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG 922
+LQ V++ L +SG R G + L+G +GAGK+TL+ AG +G G+I+ +G
Sbjct: 6 QLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAG 60
Query: 923 YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVME 979
P + + +++ Y Q PF T W L +TR + +V
Sbjct: 61 QPLEAWSATKLALHRAYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAG 112
Query: 980 LVEL-KPLKQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARA 1033
+ L L +S L G QR RL V + ANP+ ++ +DEP + LD
Sbjct: 113 ALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ 168
Query: 1034 AAIVMRTVRNTVDTGRTVVCTIH 1056
+ + + + G +V + H
Sbjct: 169 QSALDKILSALSQQGLAIVXSSH 191
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 47/253 (18%)
Query: 856 VDMPQQMKLQGVS-----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--R 908
++M +K Q VS + +L G++ PG +TAL+G +G+GK+T+ +L +
Sbjct: 11 LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 909 KTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEID- 966
TG G + + G P Q + + +H+ V E LL+ R I
Sbjct: 71 PTG----GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFR--ENIAY 115
Query: 967 SETRKMFIGEVMELVELKPLKQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANP 1017
TR + E+ + + G P G +G LS QR+ + +A L+ P
Sbjct: 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI-------------DIF 1063
++ +D+ TS LDA V R + + + RTV+ HQ S+ +
Sbjct: 176 RLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVC 235
Query: 1064 EAFDELFLMKRGG 1076
E L LM+RGG
Sbjct: 236 EQGTHLQLMERGG 248
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 21/194 (10%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDI 942
G + A++G +G GK+TL+D+L G R G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI-GFVPQ-FF 75
Query: 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTE 1002
SPF S+L + I++ + + + L L + + + LS
Sbjct: 76 SSPFAY---SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGG 132
Query: 1003 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1061
QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192
Query: 1062 IFEAFDELFLMKRG 1075
+ A L L K+
Sbjct: 193 VAIANKTLLLNKQN 206
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIK-VSGYPKKQETFARISGYCEQND 941
G + L+G +GAGKTT + +AG R G I N + ++ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 942 IHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLST 1001
I P +TVYE+L A+ R D E K + + L LK+ L L G LS
Sbjct: 92 IF-PELTVYENLXXGAYNRK----DKEGIKRDLEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1052
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 43/254 (16%)
Query: 842 FEPHSLTFDEVVYSVDMPQQMKLQG---VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 898
F P+ + F ++ VD+ ++ ++ V D L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 899 TTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 956
TT + +LAG T G + ++ V+ P Q A G TVYE L
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 438
Query: 957 AWLRLPPEIDSE--TRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
+IDS + E+ LKPL + V LS + +R+ IA L+
Sbjct: 439 ------SKIDSSKLNSNFYKTEL-----LKPLGIIDLYDRNVEDLSGGELQRVAIAATLL 487
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074
+ I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 488 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI---- 543
Query: 1075 GGYEIYVGPLGRHS 1088
++ G GRH
Sbjct: 544 ----VFEGEPGRHG 553
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 35/258 (13%)
Query: 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG-------AFRPGVLTALMGVSGAG 897
H F+ + V++P+Q+ D+ V GV+ + G++ ++G +G G
Sbjct: 77 HKCPFN-AISIVNLPEQL------DEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTG 129
Query: 898 KTTLMDVLAGRKTGGYITGN------IKVSGYPKKQETFARISGYCEQNDIHSPFVTVYE 951
KTT + +LAG+ N I+ + Q F R+ + +I Y
Sbjct: 130 KTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL----KNGEIRPVVKPQYV 185
Query: 952 SLLYSAWLRLPPEIDSETRKMF--IGEVMELVELKPLKQSLVGLP-GVSGLSTEQRKRLT 1008
LL P + + R++ + EV + E+ + L + LS + +R+
Sbjct: 186 DLL-------PKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVA 238
Query: 1009 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI-DIFEAFD 1067
IA L+ F DEP+S LD R V R +R + G+ V+ H ++ D
Sbjct: 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVI 298
Query: 1068 ELFLMKRGGYEIYVGPLG 1085
+ + G Y I+ P G
Sbjct: 299 HVVYGEPGVYGIFSKPKG 316
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 43/254 (16%)
Query: 842 FEPHSLTFDEVVYSVDMPQQMKLQG---VSDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 898
F P+ + F ++ VD+ ++ ++ V D L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 899 TTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 956
TT + +LAG T G + ++ V+ P Q A G TVYE L
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG------------TVYELL--- 424
Query: 957 AWLRLPPEIDSE--TRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELV 1014
+IDS + E+ LKPL + V LS + +R+ IA L+
Sbjct: 425 ------SKIDSSKLNSNFYKTEL-----LKPLGIIDLYDRNVEDLSGGELQRVAIAATLL 473
Query: 1015 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1074
+ I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 474 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI---- 529
Query: 1075 GGYEIYVGPLGRHS 1088
++ G GRH
Sbjct: 530 ----VFEGEPGRHG 539
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 29/255 (11%)
Query: 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSG-------AFRPGVLTALMGVSGAG 897
H F+ + V++P+Q+ D+ V GV+ + G++ ++G +G G
Sbjct: 63 HKCPFN-AISIVNLPEQL------DEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTG 115
Query: 898 KTTLMDVLAGRKTGGYITGN------IKVSGYPKKQETFARISGYCEQNDIHSPFVTVYE 951
KTT + +LAG+ N I+ + Q F R+ + + +V +
Sbjct: 116 KTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLP 175
Query: 952 SLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAV 1011
+ L ++D + F V EL L + L LS + +R+ IA
Sbjct: 176 KAVKGKVRELLKKVDEVGK--FEEVVKELELENVLDREL------HQLSGGELQRVAIAA 227
Query: 1012 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI-DIFEAFDELF 1070
L+ F DEP+S LD R V R +R + G+ V+ H ++ D +
Sbjct: 228 ALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 287
Query: 1071 LMKRGGYEIYVGPLG 1085
+ G Y I+ P G
Sbjct: 288 YGEPGVYGIFSKPKG 302
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 15/210 (7%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKK------QETFARISGY 936
+ G + ++G +G GK+T + +LAG+ N G + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 937 CEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGV 996
+ + +V + + + L + D ET K+ EV++ +EL+ + + +
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKAD-ETGKL--EEVVKALELENVLER-----EI 156
Query: 997 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1056
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 1057 QPSI-DIFEAFDELFLMKRGGYEIYVGPLG 1085
++ D + + G Y I+ P G
Sbjct: 217 DLAVLDYLSDIIHVVYGEPGVYGIFSQPKG 246
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 97/238 (40%), Gaps = 33/238 (13%)
Query: 842 FEPHSLTFDEVVYSVDMPQQMKL---QGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGK 898
F P+ + F + V++ ++ + + V D L G + G + ++G +G GK
Sbjct: 266 FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325
Query: 899 TTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 956
TT + LAG T G I ++ V+ P+ Y + + YE +Y
Sbjct: 326 TTFVKXLAGVEEPTEGKIEWDLTVAYKPQ----------YIKAD---------YEGTVYE 366
Query: 957 AWLRLPP-EIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVA 1015
++ +++S K + LKPL + V+ LS + +R+ IA L+
Sbjct: 367 LLSKIDASKLNSNFYKTEL--------LKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418
Query: 1016 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073
+ I +DEP++ LD V R +R+ + + + I D L + +
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFE 476
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCE--QNDI 942
G AL+G SG+GK+T+ ++ + G+I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLKQSLVGLPGVSGLST 1001
H TV ++ Y+ E E +M M+ + ++ +++G GV LS
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARM--AYAMDFINKMDNGLDTIIGENGVL-LSG 483
Query: 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1061
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS-- 540
Query: 1062 IFEAFDELFLMKRG 1075
E DE+ +++ G
Sbjct: 541 TIEQADEIVVVEDG 554
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 308 LDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFK 367
+D DT++G+ + +SGGQR+R+ ++ + L +DE ++ LD+ + I
Sbjct: 466 MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 368 QNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
+ + N + VI+ T D+I+++ +G IV +G +L
Sbjct: 525 E-LQKNRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 883 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDI 942
RPG + L+G +G GK+T + +LAG++ + P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLG----RFDDPPEWQEIIKYFRGSELQNYF 156
Query: 943 HSPFVTVYESLLYSAWL-RLPPEIDSETRKMFIGEVMEL-VELKP---------LKQSLV 991
++++ ++ +P I +K +GE+++L +E P L+ V
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQK--VGELLKLRMEKSPEDVKRYIKILQLENV 214
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
+ LS + +R I + V + DEP+S LD + + +R+ + + V
Sbjct: 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274
Query: 1052 VCTIHQPSI 1060
+C H S+
Sbjct: 275 ICVEHDLSV 283
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQETFA 931
+LN G F + +MG +G GKTTL+ +LAG + G + VS P+K
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK----- 421
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
I F L + + R F+ + +KPL+ +
Sbjct: 422 ----------IAPKFPGTVRQLFF-----------KKIRGQFLNPQFQTDVVKPLRIDDI 460
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 885 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCE--QNDI 942
G AL+G SG+GK+T+ ++ + G I + G+ ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 943 HSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELV-ELKPLKQSLVGLPGVSGLST 1001
H TV ++ Y+ + E E +M M+ + ++ +++G GV LS
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARM--AYAMDFINKMDNGLDTVIGENGVL-LSG 483
Query: 1002 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1061
QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS-- 540
Query: 1062 IFEAFDELFLMKRG 1075
E DE+ +++ G
Sbjct: 541 TIEKADEIVVVEDG 554
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 308 LDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFK 367
+D DTV+G+ + +SGGQR+R+ ++ + L +DE ++ LD+ + I
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 368 QNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE 414
+ + N + VI+ T D+I+++ +G IV +G +LE
Sbjct: 525 E-LQKNRTSLVIA---HRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 18/224 (8%)
Query: 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGY---PK 925
D K +L ++ +PG AL+G +G+GKTT++++L + G I V G
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKI 422
Query: 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMF-IGEVMELVELK 984
K+ + G Q+ I TV E+L Y P D E ++ + ++
Sbjct: 423 KRSSLRSSIGIVLQDTILFS-TTVKENLKYGN----PGATDEEIKEAAKLTHSDHFIKHL 477
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
P V LS QR+ L I +ANP I+ +DE TS +D + + +
Sbjct: 478 PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537
Query: 1045 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHS 1088
++ G+T + H+ ++ + D + +++ G + +G+H
Sbjct: 538 ME-GKTSIIIAHR--LNTIKNADLIIVLRDG----EIVEMGKHD 574
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 890 LMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG-YPKK----QETFARISGYCEQNDIH- 943
L G++GAGKTTL+++L + +G + + G P K ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 944 -SPFVTVYESLLYSAW--LRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLS 1000
V + ++ A+ + + +ID E R ++++LV Q +G LS
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----LS 163
Query: 1001 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
T +++R+ IA L P ++ +DEP +GLD
Sbjct: 164 TGEKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 303 LKVLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK++G A +G +S G+++RV + G L +DE + GLD +
Sbjct: 146 LKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESL 200
Query: 363 VNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
++ A I + E F I+LL +GQ + QG E +L
Sbjct: 201 LSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/207 (21%), Positives = 93/207 (44%), Gaps = 7/207 (3%)
Query: 872 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGNIKVSGYPKKQET 929
+++L G++ RPG +TAL+G +G+GK+T+ +L + TGG + + K + +
Sbjct: 30 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 89
Query: 930 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQS 989
+++ ++ + ++ E++ Y L P ++ T + P
Sbjct: 90 HRQVAAVGQEPQVFGR--SLQENIAYG--LTQKPTMEEITAAAVKSGAHSFISGLPQGYD 145
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049
S LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + +
Sbjct: 146 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 205
Query: 1050 TVVCTIHQPSIDIFEAFDELFLMKRGG 1076
V I Q + + E D + ++ G
Sbjct: 206 RSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 305 VLGLDVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+ GL DT V DE +SGGQR+ V ++ L +D+ ++ LD+++ Q+
Sbjct: 137 ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 365 CFKQNIH-----INCGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVLE 414
++ + T +SL++ A D I+ L G I G + ++E
Sbjct: 196 LLYESPERYSRSVLLITQHLSLVEQA-------DHILFLEGGAIREGGTHQQLME 243
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L VS PG AL+G SGAGK+T++ +L + +G I++ G Q T A +
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 935 ---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLV 991
G Q+ + T+ +++ Y E+++ + I + ++ ++ V
Sbjct: 128 SHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDA--IMAFPEGYRTQV 184
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
G G+ LS +++R+ IA ++ P II +DE TS LD + ++ V RT
Sbjct: 185 GERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTT 242
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPLGRHSCHL 1091
+ H+ S + D++ ++K G + GRH L
Sbjct: 243 IVVAHRLSTVV--NADQILVIKDG----CIVERGRHEALL 276
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 314 TVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN 373
T VG+ ++ +SGG+++RV ++ + +DE ++ LD+S I + ++
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI----QASLAKV 236
Query: 374 CGTAVISLLQPAPETYNLFDDIILLSNGQIVYQGPRELVL 413
C ++ T D I+++ +G IV +G E +L
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 15/204 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L VS G + G +G+GK+TL+ ++AG +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 80
Query: 935 GYCEQNDIHSPFVT-VYESLLYSAWLRLPPEIDSETRKMFIGEVMELV--ELKPLKQSLV 991
G Q F V++ + + A P+ D + + ME V + K +
Sbjct: 81 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 136
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 137 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 191
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRG 1075
+ H + D + ++++G
Sbjct: 192 ILISHDIET-VINHVDRVVVLEKG 214
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCFKQNIHINCGTAVIS 380
+SGG+++RV ++V L +DE GLD + +IV +K G VI
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK-----TLGKTVIL 193
Query: 381 LLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFES 418
+ N D +++L G+ V+ G R +EF E
Sbjct: 194 ISHDIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 15/204 (7%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARIS 934
L VS G + G +G+GK+TL+ ++AG +G++ G KK R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNI 82
Query: 935 GYCEQNDIHSPFVT-VYESLLYSAWLRLPPEIDSETRKMFIGEVMELV--ELKPLKQSLV 991
G Q F V++ + + A P+ D + + ME V + K +
Sbjct: 83 GIAFQYPEDQFFAERVFDEVAF-AVKNFYPDRDPVP---LVKKAMEFVGLDFDSFKDRVP 138
Query: 992 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1051
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV
Sbjct: 139 FF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTV 193
Query: 1052 VCTIHQPSIDIFEAFDELFLMKRG 1075
+ H + D + ++++G
Sbjct: 194 ILISHDIET-VINHVDRVVVLEKG 216
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 324 ISGGQRKRVTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCFKQNIHINCGTAVIS 380
+SGG+++RV ++V L +DE GLD + +IV +K G VI
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK-----TLGKTVIL 195
Query: 381 LLQPAPETYNLFDDIILLSNGQIVYQGPRELVLEFFES 418
+ N D +++L G+ V+ G R +EF E
Sbjct: 196 ISHDIETVINHVDRVVVLEKGKKVFDGTR---MEFLEK 230
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 35/189 (18%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGNIKVSGYPKKQETFA 931
L+ +S G ++G +GAGKT ++++AG +G + V+ ++ A
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 932 RISGYCEQNDIHSPFVTVYESLLYSAWLRL---PPEIDSETRKMFIGEVMELVELKPLKQ 988
+ QN P + V ++L + ++ P + R + ++ L++ PL
Sbjct: 76 ----FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL---KIEHLLDRNPLT- 127
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1048
LS +++R+ +A LV NP I+ +DEP S LD R T +
Sbjct: 128 ----------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQENA 166
Query: 1049 RTVVCTIHQ 1057
R ++ +H+
Sbjct: 167 REMLSVLHK 175
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 95/220 (43%), Gaps = 41/220 (18%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSG---YPKKQETF 930
+LN +S + PG + ++G SG GKTTL+ LAG + +G I +SG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 931 ARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
R GY Q + P +TVY ++ Y K + + +E
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLG----------NGKGRTAQERQRIE------ 120
Query: 989 SLVGLPGVSGLSTEQRKRLT--------IAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1040
+++ L G+S L+ L+ +A L +P +I +DEP S LD + + R
Sbjct: 121 AMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQ 176
Query: 1041 VRNTV-----DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
+R + G++ V H + + D + +MK+G
Sbjct: 177 IREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 856 VDMPQQMKLQGVS-----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--R 908
++M +K Q VS + +L G++ PG +TAL+G +G+GK+T+ +L +
Sbjct: 11 LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 909 KTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEID- 966
TGG + + G P Q + + +H+ V E LL+ R I
Sbjct: 71 PTGG----KVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFR--ENIAY 115
Query: 967 SETRKMFIGEVMELVELKPLKQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANP 1017
TR + E+ + + G P G +G LS QR+ + +A L+ P
Sbjct: 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKP 175
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI-------------DIF 1063
++ +D TS LDA V R + + + RTV+ Q S+ +
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235
Query: 1064 EAFDELFLMKRGG 1076
E L LM+RGG
Sbjct: 236 EQGTHLQLMERGG 248
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 27/214 (12%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGNIKVSGYPKKQET 929
L+N VS G + A++G +GAGK+TL+ +L G + ++ G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 930 FARISGYCEQ-NDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
AR Q +++ PF +V E + + P S+ R+ + +VM + L Q
Sbjct: 83 LARTRAVMRQYSELAFPF-SVSEVI----QMGRAPYGGSQDRQA-LQQVMAQTDCLALAQ 136
Query: 989 SLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVR 1042
+ LS +++R+ +A L P +F+DEPTS LD +R +R
Sbjct: 137 RDYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLR 191
Query: 1043 N-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1075
T V C +H ++ A D + L+ +G
Sbjct: 192 QLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQG 224
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 47/253 (18%)
Query: 856 VDMPQQMKLQGVS-----DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--R 908
++M +K Q VS + +L G++ PG +TAL+G +G+GK+T+ +L +
Sbjct: 11 LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 909 KTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEID- 966
TG G + + G P Q + + +H+ V E LL+ R I
Sbjct: 71 PTG----GKVLLDGEPLVQ---------YDHHYLHTQVAAVGQEPLLFGRSFR--ENIAY 115
Query: 967 SETRKMFIGEVMELVELKPLKQSLVGLP-------GVSG--LSTEQRKRLTIAVELVANP 1017
TR + E+ + + G P G +G L+ QR+ + +A L+ P
Sbjct: 116 GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKP 175
Query: 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSI-------------DIF 1063
++ +D TS LDA V R + + + RTV+ Q S+ +
Sbjct: 176 RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235
Query: 1064 EAFDELFLMKRGG 1076
E L LM+RGG
Sbjct: 236 EQGTHLQLMERGG 248
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GNIKVSGYPKKQE 928
+L G+S G + L+G +GAGKTT + +++ + + G +T N+ + E
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV----VEEPHE 85
Query: 929 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQ 988
IS E+ Y ++ +LR + + E+ E+VE
Sbjct: 86 VRKLISYLPEE-------AGAYRNMQGIEYLRFVAGFYASSSS----EIEEMVERAT--- 131
Query: 989 SLVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1043
+ GL VS S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 1044 TVDTGRTVVCTIHQ 1057
G T++ + H
Sbjct: 192 ASQEGLTILVSSHN 205
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGNIKVSGYPKKQETFAR 932
LNG++ + G L A++G G GK++L+ L K G++ V+ P++
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI--- 77
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPL---KQS 989
QND ++ E++L+ L P + I L +L+ L ++
Sbjct: 78 ------QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDRT 119
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1041
+G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 120 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 845 HSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD- 903
S+ + SVD +Q+ + G + L G+ +F GVLT++ GVSG+GK+TL++
Sbjct: 631 ESIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVND 687
Query: 904 ----VLAGRKTG 911
VLA R G
Sbjct: 688 ILAAVLANRLNG 699
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 999 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1056 HQPSIDIFEAFD 1067
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETF 930
+L +S + PG L+G +G+GK+TL+ G I++ G E +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 931 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK------ 984
+ G Q + ++S R + ++ I +V + V L+
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 985 PLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1044
P K V + G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 1045 VDTGRTVVC 1053
++C
Sbjct: 202 FADCTVILC 210
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.0 bits (84), Expect = 0.088, Method: Composition-based stats.
Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 890 LMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYP-KKQETFARISGYCEQ--------N 940
++G +G+GKTTL+ ++G +GNI ++G +K + R S + N
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVN 91
Query: 941 DIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVEL--KPLKQSLVGLPGVSG 998
DI V +YE E+ R +F+ E+++ ++L + L++ L L +G
Sbjct: 92 DI----VYLYE------------ELKGLDRDLFL-EMLKALKLGEEILRRKLYKLS--AG 132
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ- 1057
S R L +A + P I+ +DEP +DA ++ R ++ + G+ + H+
Sbjct: 133 QSVLVRTSLALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHEL 185
Query: 1058 PSIDIFEAFDELFLM 1072
+++++ + FL+
Sbjct: 186 DMLNLYKEYKAYFLV 200
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFAR 932
+LLN + + G +G GK+TLM +A N +V G+P ++E
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA----------NGQVDGFPTQEECR-- 496
Query: 933 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVG 992
+ Y E + + T ++ + + T++ +++E ++
Sbjct: 497 -TVYVEHDIDGTHSDTSVLDFVFESGVG--------TKEAIKDKLIEF----GFTDEMIA 543
Query: 993 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
+P +S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 544 MP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 970 RKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
R + E+ E + L +V + GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 873 RPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 1030 D 1030
D
Sbjct: 933 D 933
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 889 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGNIKVSGYPKKQETFARISGYCEQ 939
A++G +GAGK+TL++VL G T G Y N +++ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 991 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1082
G TV+ H ++D+ + D + + RGG + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 991 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1082
G TV+ H ++D+ + D + + RGG + VG
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 991 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1082
G TV+ H ++D+ + D + + RGG + VG
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 991 VGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1047
+G P + LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1048 GRTVVCTIHQPSIDIFEAFDELFLM-----KRGGYEIYVG 1082
G TV+ H ++D+ + D + + K GGY + G
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 967 SETRKMFIGEVMELVELKPLKQSLVGLP------GVSGLSTEQRKRLTIAVELVANPS-- 1018
+E + +GE+++ +E + VGL + LS + +R+ +A ++ + +
Sbjct: 427 TEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGV 486
Query: 1019 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1060
I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 487 IYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 999 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1039
LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.86, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 1022 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1069
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE----LKPLKQS 989
S +C QN P T+ E+++ ++ E R + + +L E
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSY--------DEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
++G G++ LS QR R+++A + + + +D P LD
Sbjct: 152 VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 874 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARI 933
+L ++ G L A+ G +GAGKT+L+ ++ G G IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 934 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVE----LKPLKQS 989
S +C QN P T+ E+++ ++ E R + + +L E
Sbjct: 102 S-FCSQNSWIMP-GTIKENIIGVSY--------DEYRYRSVIKACQLEEDISKFAEKDNI 151
Query: 990 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1030
++G G++ LS QR R+++A + + + +D P LD
Sbjct: 152 VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 999 LSTEQRKRLTIAVELVANP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1055
LS + +R+ +A EL + ++ +DEPT+GL + R + VD G TV+
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 1056 HQ 1057
H+
Sbjct: 791 HK 792
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 875 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 911
L +S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 322 RGISGGQRKRVTT------GEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCG 375
RG+SGG+R ++ E+ G A F+DE + LD+ +I + K+ +N
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN-- 335
Query: 376 TAVISLLQPAPETYNLFDDIILLSNGQIVYQ 406
VI + E FD + ++ G +V +
Sbjct: 336 -KVIVFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 889 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGNIKVSGYPKKQETFARISGYCEQ 939
A++G +GAGK+TL++VL G T G Y N +++ KQ FA I + ++
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 755
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 970 RKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
R + E+ E L +V + GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 873 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 1030 DARAAAIVMRTVR 1042
D + + + ++
Sbjct: 933 DRDSLGALSKALK 945
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 889 ALMGVSGAGKTTLMDVLAGR--KTGG--YITGNIKVSGYPKKQETFARISGYCEQ 939
A++G +GAGK+TL++VL G T G Y N +++ KQ FA I + ++
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI--KQHAFAHIESHLDK 749
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 970 RKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1029
R + E+ E L +V + GLS Q+ +L +A P +I +DEPT+ L
Sbjct: 867 RPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 926
Query: 1030 D 1030
D
Sbjct: 927 D 927
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 878 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 911
+S +P V+ A++G+ GK+ LM+ LAG+K G
Sbjct: 42 LSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,726,179
Number of Sequences: 62578
Number of extensions: 1610805
Number of successful extensions: 3595
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3284
Number of HSP's gapped (non-prelim): 272
length of query: 1433
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1322
effective length of database: 8,027,179
effective search space: 10611930638
effective search space used: 10611930638
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)