Query 000540
Match_columns 1433
No_of_seqs 507 out of 5829
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 16:30:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000540.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_314-318//hhsearch_pdb/000540hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 688.8 46.4 798 163-1084 429-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 608.7 59.6 794 164-1084 402-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 453.3 34.2 436 166-1086 106-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 445.5 32.0 436 166-1086 36-490 (538)
5 2iw3_A Elongation factor 3A; a 1.0 1 1 441.5 42.0 427 165-1083 448-981 (986)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 439.2 37.5 215 164-413 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 430.0 32.1 216 846-1098 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 423.4 31.1 201 873-1098 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 339.5 20.2 214 844-1084 413-636 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 333.0 35.9 197 873-1084 598-897 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=688.80 Aligned_cols=798 Identities=19% Similarity=0.238 Sum_probs=394.7
Q ss_pred CCCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC---CEEEEECCCCCCCC
Q ss_conf 443131160679948739999869999489999999479999997211999978507997765---32999637998889
Q 000540 163 QHLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIG 239 (1433)
Q Consensus 163 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~---~~~~yv~Q~d~~~~ 239 (1433)
...++|+|+|+.++||++++|+||+|||||||+++|.|+++|. +|+|.+||+++++...+ +.++||+|+ .+++
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~-~~Lf 504 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQE-PALF 504 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSS-CCCC
T ss_pred CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCC-CEEE
T ss_conf 9874333318862288278998058985778888754565164---48615799650112599985046665875-3320
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999986672078732567699999988619999988689999975123457899999999909954345333464
Q 000540 240 EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDE 319 (1433)
Q Consensus 240 ~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~ 319 (1433)
+.|||||+.|+.. ...++.+.++|+. .+.+ + .+..|+++.||.||++
T Consensus 505 ~~TI~eNI~~g~~----~~~~~~v~~a~~~---------------------a~l~-----~---~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 505 NCTIEENISLGKE----GITREEMVAACKM---------------------ANAE-----K---FIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp SEEHHHHHHTTCT----TCCHHHHHHHHHH---------------------TTCH-----H---HHHHSTTTTSSEESSS
T ss_pred CCCHHHHHHHHCC----CCHHHHHHHHHHH---------------------CCCH-----H---HHHCCCCCCCCEECCC
T ss_conf 7861678864155----2209999999987---------------------5654-----6---8870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 45567755666899999982398544322598799999899999999998881398289999459447982059199974
Q 000540 320 MIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLS 399 (1433)
Q Consensus 320 ~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~ 399 (1433)
+. .||||||||++|||+++.+|++++||||||+||+.++..+.++|+++. .++|+++.. |+.++...+|+|++|+
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiia--Hrls~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIA--HRLSTIRNADLIISCK 626 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEEC--SCTTTTTTCSEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEEC--CCHHHHHHCCEEEEEE
T ss_conf 88-777778799999998725999899845544688789999999999984--798899973--6387898689899963
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHH--HCCHHHHHHH--HHCCCCC------CC-----CCCHHHHHH
Q ss_conf 972998539877999999569989999996-789997--2280113344--4203789------86-----579889999
Q 000540 400 NGQIVYQGPRELVLEFFESMGFKCPKRKGV-ADFLQE--VTSKKDQKQY--WVHKERP------YR-----FVTVQEFTE 463 (1433)
Q Consensus 400 ~G~ivy~G~~~~~~~~F~~~Gf~~p~~~~~-adfl~e--v~s~~~~~~~--~~~~~~p------~~-----~~~~~e~~~ 463 (1433)
+|+|+++|+++++++ ..+. ++.... .....+.... ....... .. ....++...
T Consensus 627 ~G~ive~Gth~eL~~-----------~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMA-----------QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMN 695 (1321)
T ss_dssp TTEEEEEECHHHHHT-----------TTCHHHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred CCEEECCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 996513689999998-----------532799999962212222332334433223211122222342222222110221
Q ss_pred HHHCCCCCHH----HHHHHCCCCCCCCCC--CCC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 9830510010----365304976664211--112-236656771899999999999999631428899999999999999
Q 000540 464 GFQSFHVGQK----ISDELQTPFDKSKSH--RAA-LTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALV 536 (1433)
Q Consensus 464 ~~~~s~~~~~----~~~~l~~~~~~~~~~--~~~-l~~~~y~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali 536 (1433)
..+.+..+.. ..++......+.... ... ........+.+..+ ...+..+..++..++...+.+.+
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~i~~~~ 767 (1321)
T 4f4c_A 696 RVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEIL--------YHARPHALSLFIGMSTATIGGFI 767 (1321)
T ss_dssp --------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHH--------HHTGGGHHHHHHHHHHHHHGGGH
T ss_pred HHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1101321245677402577753154038999999997078631099999--------99877899999999999999999
Q ss_pred ------HHHHHEECC-CCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf ------876520215-89885445310457999999999--997999999975111478884207754725489989999
Q 000540 537 ------YMTLFFRTK-MHKDSVTDGGIYAGALFFATVMV--MFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607 (1433)
Q Consensus 537 ------~gtif~~~~-~~~~~~~~~~~~~g~lff~li~~--~~~~~~~~~~~i~~~~vf~kqr~~~~y~~~ay~l~~~l~ 607 (1433)
+..-++... .+.........+.+.+|+.+... .+..+...........+..+-|.. +-..++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~---------l~~~il 838 (1321)
T 4f4c_A 768 YPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNK---------LFRNVL 838 (1321)
T ss_dssp HHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH
T ss_conf 99999999999987517934556678999999999999999999999999999999999999999---------988873
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8209999899887655423256888889999999-------------999999999999999987213068899999999
Q 000540 608 KIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYF-------------LLLAANQMASALFRLIAATGRNMVVANTFGSFA 674 (1433)
Q Consensus 608 ~iP~~~~~~~i~~~i~Y~~igl~~~~~rff~~~l-------------~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~ 674 (1433)
+.|+.+++.. ....|+....+- +..+.......++.++....-+...+.. .++
T Consensus 839 ~~~~~ffd~~------------~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv--~l~ 904 (1321)
T 4f4c_A 839 SQHIGFFDSP------------QNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALL--IIA 904 (1321)
T ss_dssp TSCSSSTTSG------------GGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH--HHH
T ss_pred CCCCHHHCCC------------CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHH--HHH
T ss_conf 4993332167------------88848888502505999999999999999998653777702213786899999--999
Q ss_pred HHHHHHHHHCCC----CCCCHHHHHHHHHHHCHHHHHHHHH---H-HHHHCCCCCCCCCCCCCCCHHHHHHCC-C-CCCC
Q ss_conf 999998760322----6444345789998775999999999---9-984149965544788644010554314-4-7444
Q 000540 675 LLVLFSLGGFVL----SREDIKKWWKWAYWCSPLSYAQNAI---V-ANEFLGHSWKKFTPNSIESLGVQVLKS-R-GFFA 744 (1433)
Q Consensus 675 ~l~~~l~~Gf~i----~~~~ip~w~~W~~~isPl~y~~~al---~-~nef~~~~~~~~~~~~~~~~G~~~L~~-~-~~~~ 744 (1433)
+++++.+..++. ........-.... -..+..+++ . +.-|....+-. ... ...+.. . ....
T Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~l~gi~tIra~~~e~~~~------~~~-~~~~~~~~~~~~~ 974 (1321)
T 4f4c_A 905 ILPIVAFGQYLRGRRFTGKNVKSASEFAD---SGKIAIEAIENVRTVQALAREDTFY------ENF-CEKLDIPHKEAIK 974 (1321)
T ss_dssp HHHHHHHHHHHHTSCCSSCSTTTSSHHHH---HHHHHHHHHHTHHHHHHTTTHHHHH------HHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHH------HHH-HHHHHHHHHHHHH
T ss_conf 88899999999999999999999999888---9889999996279888614148899------999-9999999999999
Q ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCC-CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4035789--8999999999999999999882054578-7531-1123334434-55567853345688888742223667
Q 000540 745 HAYWFWL--GLGALFGFVLLFNLGFTLALTFLNRLEK-PRAI-LTEESESNEQ-DSTIGGTVQLSTHGESGNDIRERNSS 819 (1433)
Q Consensus 745 ~~~~~w~--~~g~Lig~~i~f~~~~~~~l~~~~~~~~-~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1433)
...+.+. .+...+.+. ...+.+.++......... .... .......... ...........+..........+...
T Consensus 975 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 1053 (1321)
T 4f4c_A 975 EAFIQGLSYGCASSVLYL-LNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFG 1053 (1321)
T ss_dssp HHHHHHHHHHHHTTHHHH-HHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999-9999998757887537654214789999999987788999999999999999999998999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHH
Q ss_conf 76443322359999877865678884025700376751441003135458852773302999818929999746999845
Q 000540 820 SHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 899 (1433)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKT 899 (1433)
.. ....+.......+. .+.....|+|+||+++++.. ...++|+|+|+.++||+.+||+|+||||||
T Consensus 1054 ~l---~~~~~~~~~~~~~~-~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKS 1119 (1321)
T 4f4c_A 1054 ML---RKISKIDSLSLAGE-KKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKS 1119 (1321)
T ss_dssp HH---HCCCSSCTTCCCSB-CCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTT
T ss_pred HH---HCCCCCCCCCCCCC-CCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHH
T ss_conf 86---07665777667787-88888818999879857999----------988212451699889899999899998199
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 7985050897785599999994902761---1223347896048888999888899999887119999999899999999
Q 000540 900 TLMDVLAGRKTGGYITGNIKVSGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGE 976 (1433)
Q Consensus 900 TLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~ 976 (1433)
||+++|.|.... .+|+|.+||.+.+. +.+++.++||+|++.++ ..|++||+.|+. .|.+.+. +.+++
T Consensus 1120 TL~~lL~rl~~p--~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNI~~gl---d~~~~sd----~ei~~ 1189 (1321)
T 4f4c_A 1120 TVVALLERFYDT--LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGL---DPSSVTM----AQVEE 1189 (1321)
T ss_dssp SHHHHHTTSSCC--SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCC-SEEHHHHHSSSS---CTTTSCH----HHHHH
T ss_pred HHHHHHHCCCCC--CCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEE-CCCHHHHHHCCC---CCCCCCH----HHHHH
T ss_conf 999999568638--9978999999865499999985459987899732-723999974549---9999999----99999
Q ss_pred HHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999299653-------223246988877899888899999999619976898299999999989999999999872899
Q 000540 977 VMELVELKPL-------KQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1049 (1433)
Q Consensus 977 vl~~l~L~~~-------~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~ 1049 (1433)
+++..++.+. -|+.||..| .+||||||||++|||+|+++|+||+||||||+||+.++..|+++|++.. .|+
T Consensus 1190 Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~ 1267 (1321)
T 4f4c_A 1190 AARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGR 1267 (1321)
T ss_dssp HHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSS
T ss_pred HHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCC
T ss_conf 99982984999717678999823889-1569999999999999971799899968111578999999999999973-999
Q ss_pred EEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 89999458438999740889999269499997899
Q 000540 1050 TVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1050 Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~~ 1084 (1433)
|+|+++|+++ ....+|+|++|++ |+++.+|+.
T Consensus 1268 TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1268 TCIVIAHRLN--TVMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp EEEEECSSSS--TTTTCSEEEEESS-SSEEEEECH
T ss_pred EEEEECCCHH--HHHHCCEEEEEEC-CEEEEECCH
T ss_conf 8999606899--9996999999989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=608.67 Aligned_cols=794 Identities=18% Similarity=0.216 Sum_probs=380.1
Q ss_pred CCEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 4313116067994873999986999948999999947999999721199997850799776---5329996379988899
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1433)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1433)
..++|+|+|+.++||+.++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..+ ++.++||+|+. ++++
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~-~l~~ 477 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEP-VLFA 477 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSC-CCCS
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCC-CCCC
T ss_conf 871012545897599889998999997999999980788999---738999999877579999986548986887-5377
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999866720787325676999999886199999886899999751234578999999999099543453334644
Q 000540 241 MTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCADTVVGDEM 320 (1433)
Q Consensus 241 lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~~dt~VG~~~ 320 (1433)
.||+||+.|+... ...+.+.+.++.. +. +. .+..|++..||.+|+.+
T Consensus 478 ~ti~eNi~~g~~~----~~~~~~~~~~~~~---------------------~~------~~--~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 478 TTIAENIRYGRED----VTMDEIEKAVKEA---------------------NA------YD--FIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp SCHHHHHHHHCSS----CCHHHHHHHHHHT---------------------TC------HH--HHHHSTTGGGCCCSSSS
T ss_pred CCHHHHHHCCCCC----CCHHHHHHHHHHH---------------------CC------HH--HHHHCCCCCCCCCCCCC
T ss_conf 6699997457989----9999999999982---------------------96------99--99746563345014787
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 55677556668999999823985443225987999998999999999988813982899994594479820591999749
Q 000540 321 IRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSN 400 (1433)
Q Consensus 321 ~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~ 400 (1433)
. .||||||||++|||+++.+|++++|||||++||+.++..+.+.++... . +.+++.+.|.... ...+|+|++|++
T Consensus 525 ~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~-~~t~i~itH~l~~-i~~~d~i~vl~~ 599 (1284)
T 3g5u_A 525 A-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--E-GRTTIVIAHRLST-VRNADVIAGFDG 599 (1284)
T ss_dssp C-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--T-TSEEEEECSCHHH-HTTCSEEEECSS
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--C-CCEEEEEECCHHH-HHCCCEEEEEEC
T ss_conf 8-659999999999999952999899979877779999999999999973--9-9989999407789-974998999989
Q ss_pred CEEEEECCHHHHHH----HHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 72998539877999----99956998999999678999722801133444203789865798899999830510010365
Q 000540 401 GQIVYQGPRELVLE----FFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISD 476 (1433)
Q Consensus 401 G~ivy~G~~~~~~~----~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~s~~~~~~~~ 476 (1433)
|+++++|+++++++ |++-.--...... .+...+.....+... ....+ ........... +.. ......
T Consensus 600 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~-~~~--~~~~~~ 670 (1284)
T 3g5u_A 600 GVIVEQGNHDELMREKGIYFKLVMTQTAGNE--IELGNEACKSKDEID---NLDMS-SKDSGSSLIRR-RST--RKSICG 670 (1284)
T ss_dssp SCCCCEECHHHHHHTTSHHHHHHHHTC-----------------------------------------------------
T ss_pred CEEEEECCHHHHHHCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCCC---CCCCC-CCCCCCCCCCC-CCC--CCCCCC
T ss_conf 9999978899998678779999997430022--111333333222223---44333-33333200034-543--334456
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHH---HEECCC
Q ss_conf 3049766642111122366567718999999999999996314288999999999-------999998765---202158
Q 000540 477 ELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIA-------SVALVYMTL---FFRTKM 546 (1433)
Q Consensus 477 ~l~~~~~~~~~~~~~l~~~~y~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~-------~~ali~gti---f~~~~~ 546 (1433)
.. ..+................+.+..++.. ++.+..+...++..+ ..+.+.+.+ +.. ..
T Consensus 671 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~ 739 (1284)
T 3g5u_A 671 PH--DQDRKLSTKEALDEDVPPASFWRILKLN--------STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTN-GG 739 (1284)
T ss_dssp ---------------CCCCCSCCCTTHHHHHH--------HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SC
T ss_pred CC--CCCCCCCHHHHHHCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_conf 42--2332110245553136625899999984--------5157999999999999999999999999999999855-68
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98854453104579999999999--9799999997511147888420775472548998999982099998998876554
Q 000540 547 HKDSVTDGGIYAGALFFATVMVM--FNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTY 624 (1433)
Q Consensus 547 ~~~~~~~~~~~~g~lff~li~~~--~~~~~~~~~~i~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y 624 (1433)
..........+...++..+.... +..+...........+..+-|. .+-..+.+.|+.+++..
T Consensus 740 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ff~~~------- 803 (1284)
T 3g5u_A 740 PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSWFDDP------- 803 (1284)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHHHHSC-------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHCCC-------
T ss_conf 50336779999999999999999999999999999999999999999---------99999983998887578-------
Q ss_pred HHCCCCCCHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2325688888999999--------------99999999999999999872130688999999999999987603226444
Q 000540 625 YVIGLDPNAGRFFKQY--------------FLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSRED 690 (1433)
Q Consensus 625 ~~igl~~~~~rff~~~--------------l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ 690 (1433)
....|+....+ +..+.. ........++..+.-+...+.. .++.++++++.+++..+
T Consensus 804 -----~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~-~~~~~~~~~i~~~~~~~~l~lv--~l~~~p~~~~~~~~~~~-- 873 (1284)
T 3g5u_A 804 -----KNTTGALTTRLANDAAQVKGATGSRLAVIFQ-NIANLGTGIIISLIYGWQLTLL--LLAIVPIIAIAGVVEMK-- 873 (1284)
T ss_dssp -----SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCSSSHHH--HHHHHHHHHHHHHHHHH--
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--
T ss_conf -----9988999999999999999999999999999-9999999999999996999999--99999999999999999--
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH--HHCCCCCCCC-------CHHHHHHHHHHHHHHH
Q ss_conf 345789998775999999999998414996554478864401055--4314474444-------0357898999999999
Q 000540 691 IKKWWKWAYWCSPLSYAQNAIVANEFLGHSWKKFTPNSIESLGVQ--VLKSRGFFAH-------AYWFWLGLGALFGFVL 761 (1433)
Q Consensus 691 ip~w~~W~~~isPl~y~~~al~~nef~~~~~~~~~~~~~~~~G~~--~L~~~~~~~~-------~~~~w~~~g~Lig~~i 761 (1433)
+..-.....--.+...+....|....... ....+.+ ....+.-... ....+.+ ...++..
T Consensus 874 ---~~~~~~~~~~~~~~~~~~~~~e~l~gi~t------i~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 942 (1284)
T 3g5u_A 874 ---MLSGQALKDKKELEGSGKIATEAIENFRT------VVSLTREQKFETMYAQSLQIPYRNAMKKAHVFG--ITFSFTQ 942 (1284)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTTCTT------TTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_conf ---99999999999999999999999988999------998465999999999999999999999999999--9999999
Q ss_pred HHH-HHHHHHHHHCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999-999999882054578753-----11123334434555678533456888887422236677644332235999987
Q 000540 762 LFN-LGFTLALTFLNRLEKPRA-----ILTEESESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKK 835 (1433)
Q Consensus 762 ~f~-~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1433)
... +...+.+.+-...-.... ....-.................+..........+..... ...........
T Consensus 943 ~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l---~~~~~~~~~~~ 1019 (1284)
T 3g5u_A 943 AMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII---EKTPEIDSYST 1019 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHH---HSCCSSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCC
T ss_conf 999999999999999999909806999999999999999999999999999999999999999998---38876666555
Q ss_pred CCCCCCCCCCEEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 78656788840257003767514410031354588527733029998189299997469998457985050897785599
Q 000540 836 RGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT 915 (1433)
Q Consensus 836 ~~~~~~~~~~~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~ 915 (1433)
.+...+.....++++|++++++.. +...+|+|+|+.++|||.+||+|+||||||||+++|+|..+. .+
T Consensus 1020 ~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~ 1087 (1284)
T 3g5u_A 1020 QGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MA 1087 (1284)
T ss_dssp SCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SE
T ss_pred CCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CC
T ss_conf 665456777857999989977999----------987002030599769988999889999789999999468678--99
Q ss_pred EEEEECCCCCCC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------C
Q ss_conf 999994902761---122334789604888899988889999988711999999989999999999992996-------5
Q 000540 916 GNIKVSGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-------P 985 (1433)
Q Consensus 916 G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~ 985 (1433)
|+|.++|.+.+. ...++.++||+|+..++ ..||+|++.+.... ...+.+ .+++.++..++. +
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~ 1159 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPD 1159 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTT
T ss_pred CEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHH----HHHHHHHHHCCHHHHHHCCC
T ss_conf 77989999800078999970268987787406-66699997466877---899999----99999998395999972704
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 32232469888778998888999999996199768982999999999899999999998728998999945843899974
Q 000540 986 LKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1065 (1433)
Q Consensus 986 ~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~ 1065 (1433)
-.|+.+|..| ..||||||||++|||+|+.+|+||+|||||+|||+.++..|++.+++. ..|+|+|+++|+++. ...
T Consensus 1160 gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~--i~~ 1235 (1284)
T 3g5u_A 1160 KYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST--IQN 1235 (1284)
T ss_dssp GGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG--GGS
T ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH--HHC
T ss_conf 2456117888-933899999999999997499999986875557999999999999986-799989999558799--980
Q ss_pred CCEEEEEECCCEEEEECCC
Q ss_conf 0889999269499997899
Q 000540 1066 FDELFLMKRGGYEIYVGPL 1084 (1433)
Q Consensus 1066 fD~illL~~GG~~vy~G~~ 1084 (1433)
+|++++|++ |+++..|+.
T Consensus 1236 ~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1236 ADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp CSEEEEEET-BEEEEEECH
T ss_pred CCEEEEEEC-CEEEEECCH
T ss_conf 998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=453.28 Aligned_cols=436 Identities=23% Similarity=0.280 Sum_probs=309.0
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 13116067994873999986999948999999947999999721199---------9978507997-----765329996
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV---------TYNGHNMDEF-----VPERTAAYI 231 (1433)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~~yv 231 (1433)
.+|+|+| .+++|+.++|+||||||||||+++|+|.+.|+ +|++ .++|.++... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 37998889---999999999866720787325676999999886199999886899999751234578999999999099
Q 000540 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1433)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL 308 (1433)
+|.....+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 54345333464455677556668999999823985443225987999998999999999988813982899994594479
Q 000540 309 DVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPET 388 (1433)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1433)
++..|..+ ..|||||||||+||++|+.+|++|+|||||+|||..++.++++.|+++.. . +.+++.++|...++
T Consensus 219 ~~~~~~~~-----~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDREL-----HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-E-GKAVLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHH
T ss_pred CCHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHH
T ss_conf 70437980-----56999999999999998459999999797435899999999999999986-6-99899996485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 82059199974972998539877999999569989999996789997228011334442037898657988999998305
Q 000540 389 YNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSF 468 (1433)
Q Consensus 389 ~~lfD~iilL~~G~ivy~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~s 468 (1433)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCC
Q ss_conf 10010365304976664211112236656771899999999999999631428899999999999999876520215898
Q 000540 469 HVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHK 548 (1433)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~y~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1433)
+.. +.... . +.
T Consensus 315 ----------------------------~~~-----------~~~i~------------------~------~~------ 325 (607)
T 3bk7_A 315 ----------------------------KGT-----------RNGIN------------------E------FL------ 325 (607)
T ss_dssp ----------------------------EEH-----------HHHHH------------------H------HH------
T ss_pred ----------------------------HHH-----------HHHHH------------------H------HH------
T ss_conf ----------------------------327-----------99999------------------9------97------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 85445310457999999999997999999975111478884207754725489989999820999989988765542325
Q 000540 549 DSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1433)
Q Consensus 549 ~~~~~~~~~~g~lff~li~~~~~~~~~~~~~i~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~ig 628 (1433)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 68888899999999999999999999999872130688999999999999987603226444345789998775999999
Q 000540 629 LDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQ 708 (1433)
Q Consensus 629 l~~~~~rff~~~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isPl~y~~ 708 (1433)
.|+. +.
T Consensus 326 -----------------------------------------------------~~~~-~~-------------------- 331 (607)
T 3bk7_A 326 -----------------------------------------------------QGYL-KD-------------------- 331 (607)
T ss_dssp -----------------------------------------------------HTEE-TT--------------------
T ss_pred -----------------------------------------------------HHCC-HH--------------------
T ss_conf -----------------------------------------------------5101-34--------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999841499655447886440105543144744440357898999999999999999999882054578753111233
Q 000540 709 NAIVANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEES 788 (1433)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~Lig~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~ 788 (1433)
... .+. ....
T Consensus 332 ------------------~~~-----------~~~----------------------------------~~~~------- 341 (607)
T 3bk7_A 332 ------------------ENV-----------RFR----------------------------------PYEI------- 341 (607)
T ss_dssp ------------------TTE-----------ECC----------------------------------SSCC-------
T ss_pred ------------------HHH-----------HCC----------------------------------CCCC-------
T ss_conf ------------------554-----------301----------------------------------2123-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCHHHCCCC
Q ss_conf 34434555678533456888887422236677644332235999987786567888402570037675144100313545
Q 000540 789 ESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVS 868 (1433)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~y~~~~~~~~~~~~~~ 868 (1433)
.. . .. .. . ... .....++++|++..+.
T Consensus 342 -~~-------~-------------~~------------~~--~-~~~------~~~~~l~~~~l~~~~~----------- 368 (607)
T 3bk7_A 342 -RF-------T-------------KL------------SE--R-VDV------ERETLVEYPRLVKDYG----------- 368 (607)
T ss_dssp -CC-------C-------------CS------------TT--S-CCC------CCCEEEEECCEEEECS-----------
T ss_pred -CC-------C-------------CC------------CC--C-CCC------CCCEEEEEECEEEEEC-----------
T ss_conf -45-------6-------------57------------77--5-444------6752899913098744-----------
Q ss_pred CCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 88527733029998189299997469998457985050897785599999994902761122334789604888899988
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVT 948 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 948 (1433)
. ..|+++++.+++|+.++|+||||||||||+++|+|..... .|+|.+ .+.++|++|+....+.+|
T Consensus 369 --~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~----------~~~i~~v~Q~~~~~~~~t 433 (607)
T 3bk7_A 369 --S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW----------DLTVAYKPQYIKAEYEGT 433 (607)
T ss_dssp --S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC----------CCCEEEECSSCCCCCSSB
T ss_pred --C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEE----------EEEEEEEECCCCCCCCCC
T ss_conf --3-4899351532799899999999989999999996698888--628999----------027999805766778984
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 88999998871199999998999999999999299653223246988877899888899999999619976898299999
Q 000540 949 VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 949 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsG 1028 (1433)
|.|.+........ .....++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 434 v~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 434 VYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501 (607)
T ss_dssp HHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999975312587-------78999999998769933754992-----23799999999999999748998999687447
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999989999999999872-8998999945843899974088999926-949999789985
Q 000540 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGPLGR 1086 (1433)
Q Consensus 1029 LD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illL~~-GG~~vy~G~~g~ 1086 (1433)
||..+...+++.|+++++ .|.|||+++|++. .+...+|++++|+. .|..+..|+..+
T Consensus 502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 89999999999999999747989999909899-999869999999598306974289899
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=445.54 Aligned_cols=436 Identities=22% Similarity=0.267 Sum_probs=306.7
Q ss_pred EEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 13116067994873999986999948999999947999999721199---------9978507997-----765329996
Q 000540 166 TILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV---------TYNGHNMDEF-----VPERTAAYI 231 (1433)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~~yv 231 (1433)
.+|+|+| .+++|+.++|+||||||||||+++|+|.+.|+ +|++ .++|.++... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 37998889---999999999866720787325676999999886199999886899999751234578999999999099
Q 000540 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1433)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL 308 (1433)
.|.....+ ..||.|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 54345333464455677556668999999823985443225987999998999999999988813982899994594479
Q 000540 309 DVCADTVVGDEMIRGISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPET 388 (1433)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~ 388 (1433)
++..+..+ ..|||||||||.||++|+.+|++|+|||||++||..+..++++.|+++.. . +.+++.++|...++
T Consensus 149 ~~~~~~~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~-g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-E-GKSVLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHH
T ss_pred CHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHH
T ss_conf 73660983-----54899999999999998469999999897345798899999999999996-5-98799994788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 82059199974972998539877999999569989999996789997228011334442037898657988999998305
Q 000540 389 YNLFDDIILLSNGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSF 468 (1433)
Q Consensus 389 ~~lfD~iilL~~G~ivy~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~s 468 (1433)
..++|+|++|.+|...| |. ...+
T Consensus 222 ~~~~dri~vl~~~~~~~-~~----------------------------------------~~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVY-GI----------------------------------------FSQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTE-EE----------------------------------------ECCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CC----------------------------------------CCCH----------------
T ss_conf 97688999986863244-02----------------------------------------2553----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCC
Q ss_conf 10010365304976664211112236656771899999999999999631428899999999999999876520215898
Q 000540 469 HVGQKISDELQTPFDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHK 548 (1433)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~y~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1433)
+. . +... .....
T Consensus 245 ----------------------------~~--~---------~~~~------------------~~~~~----------- 256 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNGI------------------NEFLR----------- 256 (538)
T ss_dssp ----------------------------EE--H---------HHHH------------------HHHHH-----------
T ss_pred ----------------------------HH--H---------HHHH------------------HHHHH-----------
T ss_conf ----------------------------55--8---------9999------------------98764-----------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 85445310457999999999997999999975111478884207754725489989999820999989988765542325
Q 000540 549 DSVTDGGIYAGALFFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1433)
Q Consensus 549 ~~~~~~~~~~g~lff~li~~~~~~~~~~~~~i~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~ig 628 (1433)
T Consensus 257 -------------------------------------------------------------------------------- 256 (538)
T 1yqt_A 257 -------------------------------------------------------------------------------- 256 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 68888899999999999999999999999872130688999999999999987603226444345789998775999999
Q 000540 629 LDPNAGRFFKQYFLLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQ 708 (1433)
Q Consensus 629 l~~~~~rff~~~l~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isPl~y~~ 708 (1433)
|+...
T Consensus 257 ------------------------------------------------------~~~~~--------------------- 261 (538)
T 1yqt_A 257 ------------------------------------------------------GYLKD--------------------- 261 (538)
T ss_dssp ------------------------------------------------------TEETT---------------------
T ss_pred ------------------------------------------------------HCCCH---------------------
T ss_conf ------------------------------------------------------02300---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999841499655447886440105543144744440357898999999999999999999882054578753111233
Q 000540 709 NAIVANEFLGHSWKKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEES 788 (1433)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~Lig~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~ 788 (1433)
.. . .. . .....
T Consensus 262 ------------------~~---~--------~~---------------------------------~-~~~~~------ 272 (538)
T 1yqt_A 262 ------------------EN---V--------RF---------------------------------R-PYEIK------ 272 (538)
T ss_dssp ------------------TT---E--------EC---------------------------------S-SSCCC------
T ss_pred ------------------HH---H--------CC---------------------------------C-CCCCC------
T ss_conf ------------------23---2--------03---------------------------------4-44555------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCHHHCCCC
Q ss_conf 34434555678533456888887422236677644332235999987786567888402570037675144100313545
Q 000540 789 ESNEQDSTIGGTVQLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVS 868 (1433)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~y~~~~~~~~~~~~~~ 868 (1433)
.. .. . ... . +.....++++|+++.+.
T Consensus 273 ---------~~-------------~~----------~-~~~----~------~~~~~~l~~~~l~~~~~----------- 298 (538)
T 1yqt_A 273 ---------FT-------------KT----------G-ERV----E------IERETLVTYPRLVKDYG----------- 298 (538)
T ss_dssp ---------CC-------------CS----------S-GGG----S------SCCCEEEEECCEEEEET-----------
T ss_pred ---------CC-------------CC----------C-CCC----C------CCCCEEEEEEEEEEEEC-----------
T ss_conf ---------45-------------57----------7-655----6------67871899930799989-----------
Q ss_pred CCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 88527733029998189299997469998457985050897785599999994902761122334789604888899988
Q 000540 869 DDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFVT 948 (1433)
Q Consensus 869 ~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 948 (1433)
. ..|+++++.+++|+++||+|+||||||||+++|+|..+.. .|+|.+ ...++|++|+....+.+|
T Consensus 299 --~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~----------~~~i~~v~Q~~~~~~~~t 363 (538)
T 1yqt_A 299 --S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW----------DLTVAYKPQYIKADYEGT 363 (538)
T ss_dssp --T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC----------CCCEEEECSSCCCCCSSB
T ss_pred --C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CEEEEE----------CCEEEEEECCCCCCCCCC
T ss_conf --9-8999074412899899998899999999999996799899--718998----------746999826776788885
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 88999998871199999998999999999999299653223246988877899888899999999619976898299999
Q 000540 949 VYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1028 (1433)
Q Consensus 949 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsG 1028 (1433)
|.|.+......... ....++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 364 v~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 364 VYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAY 431 (538)
T ss_dssp HHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred HHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 99999864036887-------8999999999749915653994-----44899999999999999728998999398010
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 999989999999999872-8998999945843899974088999926-949999789985
Q 000540 1029 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGPLGR 1086 (1433)
Q Consensus 1029 LD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illL~~-GG~~vy~G~~g~ 1086 (1433)
||..+...+++.|+++++ .|.|||+++|++. .+...+|++++|+. .|+++..|+..+
T Consensus 432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 89999999999999999867989999939899-999968999999088315740489899
No 5
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=441.52 Aligned_cols=427 Identities=20% Similarity=0.285 Sum_probs=302.0
Q ss_pred CEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 3131160679948739999869999489999999479999997211999978507997765329996379-988899999
Q 000540 165 LTILKDVSGIIKPGRLTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHNMDEFVPERTAAYISQH-DNHIGEMTV 243 (1433)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~nG~~~~~~~~~~~~~yv~Q~-d~~~~~lTV 243 (1433)
..+|+|+|+.+++|+.++|+||||||||||+++|+|. +| +|.+... ...++|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG---------~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG---------QV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHT---------CS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCC---------CC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 8767412699818978999999998799999999489---------86--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999998667207873256769999998861999998868999997512345789999999990995-4345333464455
Q 000540 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTVVGDEMIR 322 (1433)
Q Consensus 244 rEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~ka~~~~~~~~~~~~d~il~~lgL~-~~~dt~VG~~~~~ 322 (1433)
.|++.+ ...+. ...++.+++.+||+ +..+..+ .
T Consensus 514 ~e~l~~--~~~~~---------------------------------------~~~v~~~L~~lgL~~~~~~~~~-----~ 547 (986)
T 2iw3_A 514 LDFVFE--SGVGT---------------------------------------KEAIKDKLIEFGFTDEMIAMPI-----S 547 (986)
T ss_dssp HHHHHT--TCSSC---------------------------------------HHHHHHHHHHTTCCHHHHHSBG-----G
T ss_pred HHHHHH--HHCCH---------------------------------------HHHHHHHHHHCCCCHHHHCCCC-----C
T ss_conf 999998--61279---------------------------------------9999999998699844643980-----2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 67755666899999982398544322598799999899999999998881398289999459447982059199974972
Q 000540 323 GISGGQRKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILLSNGQ 402 (1433)
Q Consensus 323 glSGGqrkRvsia~~l~~~~~il~lDEptsgLDs~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL~~G~ 402 (1433)
.||||||||+.||++|+.+|++|+|||||+|||..+..++.+.|++ .+.+++.++|...++.+.+|++++|.+|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-----~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-----CGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 0799999999999999649999999797667999999999999986-----79989999798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCC
Q ss_conf 99-85398779999995699899999967899972280113344420378986579889999983051001036530497
Q 000540 403 IV-YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQKQYWVHKERPYRFVTVQEFTEGFQSFHVGQKISDELQTP 481 (1433)
Q Consensus 403 iv-y~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~p~~~~~~~e~~~~~~~s~~~~~~~~~l~~~ 481 (1433)
++ +.|+.+++.+. . + ..
T Consensus 623 iv~~~G~~~e~~~~---------------------------~--------~------------------------~~--- 640 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK---------------------------C--------P------------------------AA--- 640 (986)
T ss_dssp EEEEESCHHHHHHH---------------------------C--------G------------------------GG---
T ss_pred EECCCCCHHHHHHH---------------------------H--------H------------------------HH---
T ss_conf 42677999999861---------------------------4--------8------------------------89---
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHH
Q ss_conf 66642111122366567718999999999999996314288999999999999998765202158988544531045799
Q 000540 482 FDKSKSHRAALTTEVYGAGRRELLKACISRELLLMKRNSFVYIFKLIQIASVALVYMTLFFRTKMHKDSVTDGGIYAGAL 561 (1433)
Q Consensus 482 ~~~~~~~~~~l~~~~y~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~~~~~~~~~~~g~l 561 (1433)
..+ + ........
T Consensus 641 -------------~~~--------------------------------------------~--~l~~~~~~--------- 652 (986)
T 2iw3_A 641 -------------KAY--------------------------------------------E--ELSNTDLE--------- 652 (986)
T ss_dssp -------------GGS--------------------------------------------S--STTTCCCC---------
T ss_pred -------------HHH--------------------------------------------H--HHHHHHHH---------
T ss_conf -------------999--------------------------------------------8--64454432---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999979999999751114788842077547254899899998209999899887655423256888889999999
Q 000540 562 FFATVMVMFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGLDPNAGRFFKQYF 641 (1433)
Q Consensus 562 ff~li~~~~~~~~~~~~~i~~~~vf~kqr~~~~y~~~ay~l~~~l~~iP~~~~~~~i~~~i~Y~~igl~~~~~rff~~~l 641 (1433)
T Consensus 653 -------------------------------------------------------------------------------- 652 (986)
T 2iw3_A 653 -------------------------------------------------------------------------------- 652 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999998721306889999999999999876032264443457899987759999999999984149965
Q 000540 642 LLLAANQMASALFRLIAATGRNMVVANTFGSFALLVLFSLGGFVLSREDIKKWWKWAYWCSPLSYAQNAIVANEFLGHSW 721 (1433)
Q Consensus 642 ~l~l~~~~~~~lf~~iaa~~~~~~~A~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isPl~y~~~al~~nef~~~~~ 721 (1433)
..+
T Consensus 653 -----------------------------------------------------------------------------~~~ 655 (986)
T 2iw3_A 653 -----------------------------------------------------------------------------FKF 655 (986)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -----------------------------------------------------------------------------CCC
T ss_conf -----------------------------------------------------------------------------035
Q ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 54478864401055431447444403578989999999999999999998820545787531112333443455567853
Q 000540 722 KKFTPNSIESLGVQVLKSRGFFAHAYWFWLGLGALFGFVLLFNLGFTLALTFLNRLEKPRAILTEESESNEQDSTIGGTV 801 (1433)
Q Consensus 722 ~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~g~Lig~~i~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1433)
. .+. .
T Consensus 656 p--~~~--------------~----------------------------------------------------------- 660 (986)
T 2iw3_A 656 P--EPG--------------Y----------------------------------------------------------- 660 (986)
T ss_dssp C--CCC--------------C-----------------------------------------------------------
T ss_pred C--CCC--------------C-----------------------------------------------------------
T ss_conf 6--555--------------4-----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEE
Q ss_conf 34568888874222366776443322359999877865678884025700376751441003135458852773302999
Q 000540 802 QLSTHGESGNDIRERNSSSHSLTLTEAEGSHPKKRGMVLPFEPHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGA 881 (1433)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~ 881 (1433)
. . . .... ....+.++|++++++. ..+.+|+|+|+.
T Consensus 661 -----------~-------------~---~-~~~~------~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~ 695 (986)
T 2iw3_A 661 -----------L-------------E---G-VKTK------QKAIVKVTNMEFQYPG-----------TSKPQITDINFQ 695 (986)
T ss_dssp -----------C-------------T---T-CCST------TSEEEEEEEEEECCTT-----------CSSCSEEEEEEE
T ss_pred -----------C-------------C---C-CCCC------CCCEEEEEEEEEEECC-----------CCCEEEECCEEE
T ss_conf -----------3-------------3---4-5667------8706999846998189-----------874134322799
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCC----CCCCCHHHHHHHHH
Q ss_conf 81892999974699984579850508977855999999949027611223347896048888----99988889999988
Q 000540 882 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIH----SPFVTVYESLLYSA 957 (1433)
Q Consensus 882 i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~----~~~lTV~E~l~f~a 957 (1433)
+++|+.++|+||||||||||+++|+|.... .+|+|.++|. ..++|++|+..+ ....|++|++.+.-
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~ 765 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRF 765 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHH
T ss_conf 828978999899998799999999579888--8608998686--------425763130243321001147999988775
Q ss_pred HHC------------CC-C---------------------------------------------------CC--------
Q ss_conf 711------------99-9---------------------------------------------------99--------
Q 000540 958 WLR------------LP-P---------------------------------------------------EI-------- 965 (1433)
Q Consensus 958 ~lr------------~~-~---------------------------------------------------~~-------- 965 (1433)
... .. . ..
T Consensus 766 q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~ 845 (986)
T 2iw3_A 766 QTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI 845 (986)
T ss_dssp TTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEE
T ss_pred HCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 04502555543321034355544200011232012344445554312220021000255432000001234323443210
Q ss_pred C--------------------------HHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9--------------------------9899999999999929965-3-2232469888778998888999999996199
Q 000540 966 D--------------------------SETRKMFIGEVMELVELKP-L-KQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017 (1433)
Q Consensus 966 ~--------------------------~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~glSgGqrkRlsia~~L~~~p 1017 (1433)
. .......++++++.++|.+ . .+.. .+.||||||||+.||++|+.+|
T Consensus 846 ~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P 920 (986)
T 2iw3_A 846 PRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRP 920 (986)
T ss_dssp EGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCC-----CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 16777666766554432455543022323479999999997699805444898-----0423999999999999998399
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 768982999999999899999999998728998999945843899974088999926949999789
Q 000540 1018 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGYEIYVGP 1083 (1433)
Q Consensus 1018 ~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~~GG~~vy~G~ 1083 (1433)
++|+|||||+|||..+...+++.|++. +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 921 ~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 921 HLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp SEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 999997986577999999999999974---997999979899-99985899999989-99998687
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=439.17 Aligned_cols=215 Identities=22% Similarity=0.282 Sum_probs=152.1
Q ss_pred CCEEECCEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CEEEEEECCEE
Q ss_conf 43131160679948739999869999489999---------------------999479999997----21199997850
Q 000540 164 HLTILKDVSGIIKPGRLTLLLGPPASGKTTLL---------------------LALAGKLDSSLK----VSGRVTYNGHN 218 (1433)
Q Consensus 164 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~nG~~ 218 (1433)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 799776532999637998-------------------8899999999998667207873256769999998861999998
Q 000540 219 MDEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDP 279 (1433)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~ 279 (1433)
.... +++.++||+|... .++.+||+|++.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCH
Q ss_conf 86899999751234578999999999099543-45333464455677556668999999823985--4432259879999
Q 000540 280 DIDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTVVGDEMIRGISGGQRKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1433)
Q Consensus 280 d~d~~~ka~~~~~~~~~~~~d~il~~lgL~~~-~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~--il~lDEptsgLDs 356 (1433)
.+ .. ..+..... .+++.+||++. .+..+ ..|||||||||.||++|+.+|+ +|+|||||+|||+
T Consensus 172 -~~----~~---~~~~~~~~-~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -AR----LI---LREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHHH-HHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HH----HH---HHHHHHHH-HHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -88----88---99999999-89997598434414970-----0189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 989999999999888139828999945944798205919997------497299853987799
Q 000540 357 STTFQIVNCFKQNIHINCGTAVISLLQPAPETYNLFDDIILL------SNGQIVYQGPRELVL 413 (1433)
Q Consensus 357 ~t~~~iv~~L~~~~~~~~~t~ii~i~q~~~~~~~lfD~iilL------~~G~ivy~G~~~~~~ 413 (1433)
.+..++++.|+++.. . +.+++.++|+... ...+|++++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-C-CCEEEEEECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-4-9989999578799-9629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=430.01 Aligned_cols=216 Identities=20% Similarity=0.233 Sum_probs=165.6
Q ss_pred EEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 02570037675144100313545885277330299981892999974699984579850508977855999999949027
Q 000540 846 SLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPK 925 (1433)
Q Consensus 846 ~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 925 (1433)
.+++++++..+. . ..|+.+++.+++|++++|+||||||||||+++|+|.... ..|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979-------------8-899826646889989999999999899999999578889--9818999984--
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 61122334789604888899988889999988711999999989999999999992996532232469888778998888
Q 000540 926 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRK 1005 (1433)
Q Consensus 926 ~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrk 1005 (1433)
.++|++|+....+..||+|++.+....... . ....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDALS--T----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSSTTC--T----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHCCC--H----HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------567614000345477799999875531121--1----6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECC
Q ss_conf 99999999619976898299999999989999999999872-89989999458438999740889999269-49999789
Q 000540 1006 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GYEIYVGP 1083 (1433)
Q Consensus 1006 Rlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~illL~~G-G~~vy~G~ 1083 (1433)
|++||++|+.+|++|+|||||+|||..+...+++.|+++++ .|.|||+++|++. ++...+|++++|+.+ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCCCHHHHHHHHC
Q ss_conf 985200589998519
Q 000540 1084 LGRHSCHLVSYFEAI 1098 (1433)
Q Consensus 1084 ~g~~~~~~~~yF~~~ 1098 (1433)
...-...+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=423.45 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=155.2
Q ss_pred EEEEEEEEEEECC-----CEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 7733029998189-----29999746999845798505089778559999999490276112233478960488889998
Q 000540 873 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGYPKKQETFARISGYCEQNDIHSPFV 947 (1433)
Q Consensus 873 ~iL~~vs~~i~pG-----~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 947 (1433)
..++++++.+++| |+++|+||||||||||+++|+|..+.. .|+ ... ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCC------CCC----CCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--885------866----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 88899999887119999999899999999999929965322324698887789988889999999961997689829999
Q 000540 948 TVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1027 (1433)
Q Consensus 948 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTs 1027 (1433)
||+|.+... .+. ... ....++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 999998999999999987-28998999945843899974088999926-949999789985200589998519
Q 000540 1028 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGYEIYVGPLGRHSCHLVSYFEAI 1098 (1433)
Q Consensus 1028 GLD~~sa~~i~~~l~~~~-~~g~Tvi~t~Hqps~~i~~~fD~illL~~-GG~~vy~G~~g~~~~~~~~yF~~~ 1098 (1433)
|||..+...+++.|+++. +.|.|||+++|+.. ++...+|++++|+. .|+++..|++.+--.....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=339.50 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=179.3
Q ss_pred CCEEEEECEEEEEECCCCHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 84025700376751441003135458852773302999818929999746999845798505089778559999999490
Q 000540 844 PHSLTFDEVVYSVDMPQQMKLQGVSDDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNIKVSGY 923 (1433)
Q Consensus 844 ~~~i~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 923 (1433)
...|+|+|++|+++.. +...+|+|+|+.++||+++||+||||||||||+++|.|.... .+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCC--CCCCCCCCCC
T ss_conf 8767999855407999----------987433331886228827899805898577888875456516--4486157996
Q ss_pred CCCC---CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 2761---122334789604888899988889999988711999999989999999999992996-------532232469
Q 000540 924 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELK-------PLKQSLVGL 993 (1433)
Q Consensus 924 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~ 993 (1433)
+.+. +.+++.++||+|+..+ .+.|++||+.|+. ++.+. +.+.++++..++. +-.|+.||.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEE-ECCCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 50112599985046665875332-0786167886415-----52209----99999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 88877899888899999999619976898299999999989999999999872899899994584389997408899992
Q 000540 994 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1073 (1433)
Q Consensus 994 ~~~~glSgGqrkRlsia~~L~~~p~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~ 1073 (1433)
.|. .||||||||++|||+++++|+|++||||||+||+.++..+++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 69499997899
Q 000540 1074 RGGYEIYVGPL 1084 (1433)
Q Consensus 1074 ~GG~~vy~G~~ 1084 (1433)
+ |+++..|+.
T Consensus 627 ~-G~ive~Gth 636 (1321)
T 4f4c_A 627 N-GQVVEVGDH 636 (1321)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEECCCCH
T ss_conf 9-965136899
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=333.02 Aligned_cols=197 Identities=27% Similarity=0.413 Sum_probs=144.0
Q ss_pred EEEEEEEEEEECCCEEEEECCCCCCHHHHH---------HHHCCCC--CCC--EEE------EEEEECCCCCCCCC----
Q ss_conf 773302999818929999746999845798---------5050897--785--599------99999490276112----
Q 000540 873 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRK--TGG--YIT------GNIKVSGYPKKQET---- 929 (1433)
Q Consensus 873 ~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl---------~~Lag~~--~~~--~~~------G~i~i~g~~~~~~~---- 929 (1433)
..|+|||+.+++|++++|+|+||||||||+ +.+.+.. .++ .+. +.+.+++.|.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred -----------------------------C-----------CCEEEEEECCCCCCC------------------------
Q ss_conf -----------------------------2-----------334789604888899------------------------
Q 000540 930 -----------------------------F-----------ARISGYCEQNDIHSP------------------------ 945 (1433)
Q Consensus 930 -----------------------------~-----------~~~~gyv~Q~d~~~~------------------------ 945 (1433)
| .+-.||+.++..+.|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------988889999988711999999989999999999992996532232469888778998888999999996199
Q 000540 946 --------FVTVYESLLYSAWLRLPPEIDSETRKMFIGEVMELVELKPLKQSLVGLPGVSGLSTEQRKRLTIAVELVANP 1017 (1433)
Q Consensus 946 --------~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkRlsia~~L~~~p 1017 (1433)
.+||.|++.|.... .....+.++|+.++|.... .|.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCC
Q ss_conf ---76898299999999989999999999872899899994584389997408899992-----69499997899
Q 000540 1018 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGYEIYVGPL 1084 (1433)
Q Consensus 1018 ---~iLlLDEPTsGLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~illL~-----~GG~~vy~G~~ 1084 (1433)
++|+|||||+|||+.+...+++.|+++++.|.|||+++|++ +....+|++++|. +||+++..|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 88978999798889999999999999999996699899993799--99972999999668777789789997699
Done!