BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000541
(1433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 51/248 (20%)
Query: 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 893
H ITF I + +P D V+L+ ++ + + G + ++G SG+GK+TL +
Sbjct: 2 HDITFRNIRFR-------YKP----DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKL 50
Query: 894 LAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPN-------VTVYESLLYSA 946
+ P+ + I G+ + PN V + +++L +
Sbjct: 51 IQ-------------RFYIPENGQVL--IDGHDLA--LADPNWLRRQVGVVLQDNVLLNR 93
Query: 947 WLRLPLEVDSPTRKMFIEEVMELVEL-------NPLRQA---LVGLPGVSGLSTEQRKRL 996
+ + + +P M +E+V+ +L + LR+ +VG G +GLS QR+R+
Sbjct: 94 SIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG-AGLSGGQRQRI 150
Query: 997 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFD 1056
IA LV NP I+ DE TS LD + ++MR + + + GRTV+ H+ S V+ D
Sbjct: 151 AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNAD 207
Query: 1057 ELFLLKRG 1064
+ ++++G
Sbjct: 208 RIIVMEKG 215
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T+VG E G+SGGQ++R+ +V + L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 187
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T+I ++ T D II++ G+IV QG + +L
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 26/287 (9%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETF 919
K+V L+ V+ G ++G SGAGKTT M ++AG +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 920 A----RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R G Q PN+T +E++ + PL +++ + V E+ ++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDI 130
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRN 1032
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++
Sbjct: 131 HHVLNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG-------QEIYVGSLGRHSSHLIKYFE 1085
+ G T++ H P+ DI D + +L +G +++Y + + LI
Sbjct: 189 RL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEIN 245
Query: 1086 GIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRN 1132
+ G +G + V+ S +GI D+ S ++ + +
Sbjct: 246 ELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDD 291
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
R +SG Q++RV +V L +DE + LD+ +L + + G TL+ +
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVV 197
Query: 386 LQPAPETYDLFDDIILISDGQIVYQGPREHV 416
+ + + D + ++ G++V G E +
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 40/223 (17%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQET 918
D V+L+ ++ + + G + ++G SG+GK+TL ++ P+ +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-------------RFYIPENGQV 60
Query: 919 FARISGYCEQNDIHSPN-------VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
I G+ + PN V + +++L + + + + +P M +E+V+ +
Sbjct: 61 L--IDGHDLA--LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG--MSVEKVIYAAK 114
Query: 972 L-------NPLRQA---LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
L + LR+ +VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 115 LAGAHDFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ ++MR + + + GRTV+ H+ S V+ D + ++++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T+VG E G+SGGQ++R+ +V + L DE ++ LD + I+ ++ + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 185
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T+I ++ T D II++ G+IV QG + +L
Sbjct: 186 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 40/223 (17%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQET 918
D V+L+ ++ + + G + ++G SG+GK+TL ++ P+ +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-------------RFYIPENGQV 66
Query: 919 FARISGYCEQNDIHSPN-------VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
I G+ + PN V + +++L + + + + +P M +E+V+ +
Sbjct: 67 L--IDGHDLA--LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG--MSVEKVIYAAK 120
Query: 972 L-------NPLRQA---LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
L + LR+ +VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 121 LAGAHDFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ ++MR + + + GRTV+ H+ S V+ D + ++++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T+VG E G+SGGQ++R+ +V + L DE ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 191
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T+I ++ T D II++ G+IV QG + +L
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 26/287 (9%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETF 919
K+V L+ V+ G ++G SGAGKTT M ++AG +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 920 A----RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
R G Q PN+T +E++ + PL +++ + V E+ ++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDI 130
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR---AAAIVMRTVRN 1032
L P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++
Sbjct: 131 HHVLNHFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1033 TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG-------QEIYVGSLGRHSSHLIKYFE 1085
+ G T++ H P+ DI D + +L +G +++Y + + LI
Sbjct: 189 RL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEIN 245
Query: 1086 GIRGVSKIKDGYNPATWMLEVTAPSQETALGIDFADIYKSSELYRRN 1132
+ G +G + V+ S +GI D+ S ++ + +
Sbjct: 246 ELEG-KVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDD 291
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
R +SGGQ++RV +V L +DE + LD+ +L + + G TL+ +
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVV 197
Query: 386 LQPAPETYDLFDDIILISDGQIVYQGPREHVLE 418
+ + + D + ++ G++V G E + +
Sbjct: 198 SHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 51/248 (20%)
Query: 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 893
H ITF I + +P D V+L+ ++ + + G + ++G +G+GK+TL +
Sbjct: 2 HDITFRNIRFR-------YKP----DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKL 50
Query: 894 LAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPN-------VTVYESLLYSA 946
+ P+ + I G+ + PN V + +++L +
Sbjct: 51 I-------------QRFYIPENGQVL--IDGHDLA--LADPNWLRRQVGVVLQDNVLLNR 93
Query: 947 WLRLPLEVDSPTRKMFIEEVMELVEL-------NPLRQA---LVGLPGVSGLSTEQRKRL 996
+ + + +P M +E+V+ +L + LR+ +VG G +GLS QR+R+
Sbjct: 94 SIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG-AGLSGGQRQRI 150
Query: 997 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFD 1056
IA LV NP I+ DE TS LD + ++MR + + + GRTV+ H+ S V+ D
Sbjct: 151 AIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNAD 207
Query: 1057 ELFLLKRG 1064
+ ++++G
Sbjct: 208 RIIVMEKG 215
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T+VG E G+SGGQ++R+ +V + L DE ++ LD + I+ ++ + I
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 187
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T+I ++ T D II++ G+IV QG + +L
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 40/223 (17%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQET 918
D V+L+ ++ + + G + ++G SG+GK+TL ++ P+ +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-------------RFYIPENGQV 66
Query: 919 FARISGYCEQNDIHSPN-------VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
I G+ + PN V + +++L + + + + +P M +E+V+ +
Sbjct: 67 L--IDGHDLA--LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG--MSVEKVIYAAK 120
Query: 972 L-------NPLRQA---LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
L + LR+ +VG G +GLS QR+R+ IA LV NP I+ D+ TS LD
Sbjct: 121 LAGAHDFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYE 179
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ ++MR + + + GRTV+ H+ S V+ D + ++++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T+VG E G+SGGQ++R+ +V + L D+ ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHK---I 191
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T+I ++ T D II++ G+IV QG + +L
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 15/160 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTXXXXXXXXXXXXXPKKQETFA 920
LN ++ + G AL+G SG+GK+TL+ +AG + P K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
R G QN P++TVY+++ + PLE+ R+ ++V E+ ++ + + L
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAF------PLELRKAPREEIDKKVREVAKMLHIDKLLN 128
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1020
P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 129 RYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 52/271 (19%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFV 227
+ T L +++ I+ G LLGP S + SG++ ++ D+ E
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELP 71
Query: 228 PQ-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDID 286
P+ R + Q+ MTV + +AF + P +ID
Sbjct: 72 PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA--------------------PREEID 111
Query: 287 VFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPA 346
++ A K+L +D + +SGGQ++RV +V
Sbjct: 112 KKVREVA--------------KMLHIDKLLNRYPWQ-----LSGGQQQRVAIARALVKEP 152
Query: 347 QALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406
+ L +DE + LD+ ++ L++ L G T + + E + D I +I +G+
Sbjct: 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQAEALAMADRIAVIREGE 211
Query: 407 IVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
I+ G + V ++K PK K V FL
Sbjct: 212 ILQVGTPDEV--YYK------PKYKFVGGFL 234
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQET 918
D V+L+ ++ + + G + ++G SG+GK+TL ++ P+ +
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-------------QRFYIPENGQV 60
Query: 919 FARISGYCEQNDIHSPN-------VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
I G+ + PN V + +++L + + + + +P M +E+V+ +
Sbjct: 61 L--IDGHDLA--LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG--MSVEKVIYAAK 114
Query: 972 L-------NPLRQA---LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
L + LR+ +VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 115 LAGAHDFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ ++MR + + + GRTV+ I + V+ D + ++++G
Sbjct: 174 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T+VG E G+SGGQ++R+ +V + L DE ++ LD + I+ ++ + I
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 185
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T+I ++ T D II++ G+IV QG + +L
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 40/223 (17%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQET 918
D V+L+ ++ + + G + ++G SG+GK+TL ++ P+ +
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-------------QRFYIPENGQV 66
Query: 919 FARISGYCEQNDIHSPN-------VTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVE 971
I G+ + PN V + +++L + + + + +P M +E+V+ +
Sbjct: 67 L--IDGHDLA--LADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG--MSVEKVIYAAK 120
Query: 972 L-------NPLRQA---LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
L + LR+ +VG G +GLS QR+R+ IA LV NP I+ DE TS LD
Sbjct: 121 LAGAHDFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ ++MR + + + GRTV+ I + V+ D + ++++G
Sbjct: 180 SEHVIMRNM-HKICKGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T+VG E G+SGGQ++R+ +V + L DE ++ LD + I+ ++ + I
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---I 191
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T+I ++ T D II++ G+IV QG + +L
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L V+ F G + ++G +G+GKTTL+ +LAG P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAG---LLAAAGEIFLDGSPADPFLLRKN 82
Query: 923 SGYCEQN-DIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
GY QN TV E + +S + + +D + I++V+ELV L+ L A
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEI---MGLDESEMRKRIKKVLELVGLSGLAAA--- 136
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
LS Q++RL IA L + + +DEP S LD + + + + + + G+ ++
Sbjct: 137 --DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 1042 CTIHQ 1046
H+
Sbjct: 195 LVTHE 199
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 114/279 (40%), Gaps = 61/279 (21%)
Query: 156 LNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGR 215
LNSV+ R +LKDV+ G++ +++G S L +G
Sbjct: 14 LNSVSF---RYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL----LAAAGE 66
Query: 216 VTYNGHDMDEFVPQRTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRRE 274
+ +G D F+ ++ Y+ Q+ + I TV E +AFS G+ SE+ +R
Sbjct: 67 IFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDE-----SEMRKRI 121
Query: 275 KAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD--VCADTMVGDEMLRGISGGQ 332
K +L+++GL AD + +SGGQ
Sbjct: 122 KK-----------------------------VLELVGLSGLAAADPL-------NLSGGQ 145
Query: 333 KKRVTTGEMMVGPAQALFMDEISTGLDSSTT---FQIVNSLRQSIHILKGTTLISLLQPA 389
K+R+ M+ + L +DE + LD + FQ++ SL+ +G +I L+
Sbjct: 146 KQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKN-----EGKGII-LVTHE 199
Query: 390 PETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECP 428
E D D I+ IS+G I + G E +E +F E P
Sbjct: 200 LEYLDDMDFILHISNGTIDFCGSWEEFVE-REFDDVEIP 237
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 34/216 (15%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTXXXXXXXXXXXXXPKKQ 916
L G++ + G +TA++G +G GK+TL +GR K +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAW-LRLPLE-----VDSPTRKMFIEEVMELV 970
E+ + + D + +VY+ + + A ++LP + VD+ ++ IE + +
Sbjct: 84 ESIGIV---FQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-- 138
Query: 971 ELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-T 1029
P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 139 --KP----------THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1030 VRNTVDTGRTVVCTIHQPSIDIVEAF-DELFLLKRG 1064
V + G T++ H IDIV + D +F++K G
Sbjct: 187 VEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEG 220
Score = 37.4 bits (85), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+S GQKKRV ++V + L +DE + GLD +I+ L + L T +I+
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA--- 200
Query: 388 PAPETYDL------FDDIILISDGQIVYQGPREHVL---EFFKFMGFECPKRKGVADFLQ 438
T+D+ D++ ++ +G+++ QG + V E + + P+ + + L+
Sbjct: 201 ----THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILK 256
Query: 439 E 439
E
Sbjct: 257 E 257
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 10/189 (5%)
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA 920
L +L G++ R G + ++G SG+GK+T + L + K
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 921 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
++ G Q P++TV ++ + P++V R+ + MEL++ L+
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 1038 RTVVCTIHQ 1046
T+V H+
Sbjct: 189 MTMVVVTHE 197
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQ +RV + + + DE ++ LD ++++ ++Q + +G T++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 196
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440
++ D ++ + G I+ +G E + F+ P+ + FL +V
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 241
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 10/189 (5%)
Query: 861 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA 920
L +L G++ R G + ++G SG+GK+T + L + K
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 921 RIS---GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
++ G Q P++TV ++ + P++V R+ + MEL++ L+
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
P LS Q +R+ IA L P I+ DEPTS LD V+ ++ + G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 1038 RTVVCTIHQ 1046
T+V H+
Sbjct: 210 MTMVVVTHE 218
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQ +RV + + + DE ++ LD ++++ ++Q + +G T++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN--EGMTMVVVTH 217
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEV 440
++ D ++ + G I+ +G E + F+ P+ + FL +V
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDL--------FDRPQHERTKAFLSKV 262
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGR 576
Query: 1039 TVVCTIHQPSI----DIVEAFDELFLLKRGGQE 1067
T + H+ S D++ FD ++++G +
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 51/281 (18%)
Query: 152 IEGFLNSVNI---LPSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDS 208
I+G L NI PSRK+ + ILK ++ ++ G+ L+G D
Sbjct: 384 IQGNLEFKNIHFSYPSRKE-VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 209 SLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLS 268
+ G V+ +G D+ RT I +RE + GV S+ +L
Sbjct: 443 ---LDGMVSIDGQDI------RT----------INVRYLREII-------GVVSQEPVLF 476
Query: 269 ELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG- 327
+ E + D +D KA +EA+ D+I+K L DT+VG+ RG
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGA 525
Query: 328 -ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL 386
+SGGQK+R+ +V + L +DE ++ LD+ + + +L ++ +G T I +
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA---REGRTTIVIA 582
Query: 387 QPAPETYDLFDDIILISDGQIVYQGPREHVLE----FFKFM 423
+ D I G IV QG + ++ +FK +
Sbjct: 583 HRLSTVRNA-DVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ + + +L ++
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--- 1217
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
+G T I ++ T D I++I +G++ G + +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGR 576
Query: 1039 TVVCTIHQPSI----DIVEAFDELFLLKRGGQE 1067
T + H+ S D++ FD ++++G +
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 51/281 (18%)
Query: 152 IEGFLNSVNI---LPSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDS 208
I+G L NI PSRK+ + ILK ++ ++ G+ L+G D
Sbjct: 384 IQGNLEFKNIHFSYPSRKE-VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 209 SLRVSGRVTYNGHDMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLS 268
+ G V+ +G D+ RT I +RE + GV S+ +L
Sbjct: 443 ---LDGMVSIDGQDI------RT----------INVRYLREII-------GVVSQEPVLF 476
Query: 269 ELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG- 327
+ E + D +D KA +EA+ D+I+K L DT+VG+ RG
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAV----KEANAY-DFIMK---LPHQFDTLVGE---RGA 525
Query: 328 -ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL 386
+SGGQK+R+ +V + L +DE ++ LD+ + + +L ++ +G T I +
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA---REGRTTIVIA 582
Query: 387 QPAPETYDLFDDIILISDGQIVYQGPREHVLE----FFKFM 423
+ D I G IV QG + ++ +FK +
Sbjct: 583 HRLSTVRNA-DVIAGFDGGVIVEQGNHDELMREKGIYFKLV 622
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T VGD+ + +SGGQK+R+ +V L +DE ++ LD+ + + +L ++
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--- 1217
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
+G T I ++ T D I++I +G++ G + +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXX---XXXXXXXPKKQETFA 920
+N ++ + G L+G SG GKTT + ++AG + P K +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 87
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
+ Q+ P++TVYE++ + PL++ + + V EL + + L
Sbjct: 88 MVF----QSYAVWPHMTVYENIAF------PLKIKKFPKDEIDKRVRWAAELLQIEELLN 137
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 138 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
+ ++ + D + ++ R GQ + +GS
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNR-GQLLQIGS 226
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQ++RV +V L MDE + LD+ + +++ LK TT I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 201
Query: 388 PAPETYDLFDDIILISDGQIVYQG 411
E + D I +++ GQ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXX---XXXXXXXPKKQETFA 920
+N ++ + G L+G SG GKTT + ++AG + P K +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 86
Query: 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALV 980
+ Q+ P++TVYE++ + PL++ + + V EL + + L
Sbjct: 87 MVF----QSYAVWPHMTVYENIAF------PLKIKKFPKDEIDKRVRWAAELLQIEELLN 136
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
P + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 137 RYP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 1041 VCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072
+ ++ + D + ++ R GQ + +GS
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNR-GQLLQIGS 225
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQ++RV +V L MDE + LD+ + +++ LK TT I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 200
Query: 388 PAPETYDLFDDIILISDGQIVYQG 411
E + D I +++ GQ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 9/192 (4%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHS 933
G AL+G +G+GK+T+ +L + + I G Q+ I
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF 105
Query: 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLR-QALVGLPGVSGLSTEQ 992
N T+ ++LY EV T+ ++ + +E P + +VG G+ LS +
Sbjct: 106 -NETIKYNILYGKLDATDEEVIKATKSA---QLYDFIEALPKKWDTIVGNKGMK-LSGGE 160
Query: 993 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIV 1052
R+R+ IA L+ +P I+ DE TS LD++ + + V + + RT++ H+ S +
Sbjct: 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS--TI 217
Query: 1053 EAFDELFLLKRG 1064
+ + + LL +G
Sbjct: 218 SSAESIILLNKG 229
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTF---QIVNSLRQS 373
DT+VG++ ++ +SGG+++R+ ++ + + DE ++ LDS T + + V LR
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-- 202
Query: 374 IHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEF 419
K TLI ++ T + IIL++ G+IV +G + +L+
Sbjct: 203 ----KNRTLI-IIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 33/221 (14%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTXXXXXXXXXXX 910
+D +L +S +P + A G SG GK+T+ +L AG T
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 911 XXPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMEL- 969
+ Q G+ Q+ T+ E+L Y LE D ++ +V++L
Sbjct: 72 ENWRSQ------IGFVSQDSAIMAG-TIRENLTYG------LEGDYTDEDLW--QVLDLA 116
Query: 970 -----VELNPLR-QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
VE P + VG GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 117 FARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 1024 AIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
++V + + +++ GRT + H+ S IV+A D+++ +++G
Sbjct: 176 SMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
+T VG+ ++ ISGGQ++R+ + + L +DE + LDS + + +L +
Sbjct: 130 NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS---L 185
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
+KG T + + D D I I GQI G ++
Sbjct: 186 MKGRTTLVIAHRLSTIVDA-DKIYFIEKGQITGSGKHNELV 225
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 860 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTXXXX--XXXXXXXXXPKK 915
K+ ++GVS + G AL+G SG GKTT + +LAG + T PK
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
+E G QN P++TV+E++ + PL ++ + V+E+ +
Sbjct: 75 REV-----GMVFQNYALYPHMTVFENIAF------PLRARRISKDEVEKRVVEIARKLLI 123
Query: 976 RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1034
L P + LS Q++R+ +A LV P ++ DEP S LDA I+ +++
Sbjct: 124 DNLLDRKP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181
Query: 1035 DTGRTVVCTIH 1045
+ G T V H
Sbjct: 182 ELGITSVYVTH 192
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQI---VNSLRQSIHILKGTTLIS 384
+SGGQ++RV +V + L DE + LD++ + + L+Q + G T +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL----GITSVY 189
Query: 385 LLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+ E + I + + G++V G + V ++ PK VA F+
Sbjct: 190 VTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV--------YDSPKNMFVASFI 234
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHS 933
G +G SG GK+TL+ ++AG +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM-NDTPPAERGVGMVFQSYALY 87
Query: 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993
P+++V E++ + L++ +++ + V ++ E+ L L P LS QR
Sbjct: 88 PHLSVAENMSFG------LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSGGQR 139
Query: 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDI 1051
+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H D
Sbjct: 140 QRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH----DQ 194
Query: 1052 VEAF---DELFLLKRG 1064
VEA D++ +L G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
D + +SGGQ++RV G +V +DE + LD++ Q+ + + +H G T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 382 LISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+I + E L D I+++ G++ G LE + + P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHS 933
G +G SG GK+TL+ ++AG +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM-NDTPPAERGVGMVFQSYALY 87
Query: 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993
P+++V E++ + L++ +++ + V ++ E+ L L P LS QR
Sbjct: 88 PHLSVAENMSFG------LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSGGQR 139
Query: 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDI 1051
+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H D
Sbjct: 140 QRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH----DQ 194
Query: 1052 VEAF---DELFLLKRG 1064
VEA D++ +L G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
D + +SGGQ++RV G +V +DE + LD++ Q+ + + +H G T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 382 LISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+I + E L D I+++ G++ G LE + + P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1038
LVG G LS Q++R+ IA LV NP I+ +DE TS LDA + IV + + + GR
Sbjct: 547 LVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAKGR 604
Query: 1039 TVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
T + H+ S I A +L + + GQ + VG
Sbjct: 605 TTIIIAHRLST-IRNA--DLIISCKNGQVVEVG 634
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 30/198 (15%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTXXXXXXXXXXXXXPKK 915
+L G+S + PG AL+G SG GK+T++ D L G
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE-----IFIDGSEIKTLNP 1148
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
+ T ++I+ ++ + + ++ E+++Y L+ S T +EE L ++
Sbjct: 1149 EHTRSQIAIVSQEPTLF--DCSIAENIIYG------LDPSSVTMAQ-VEEAARLANIHNF 1199
Query: 976 RQAL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1028
L VG G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1200 IAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQE 1258
Query: 1029 TVRNTVDTGRTVVCTIHQ 1046
+ + GRT + H+
Sbjct: 1259 AL-DRAREGRTCIVIAHR 1275
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 107/256 (41%), Gaps = 45/256 (17%)
Query: 166 KKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDE 225
+ + ILK +S + PG+ L+GP D+ + G + +G ++
Sbjct: 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---LGGEIFIDGSEIKT 1145
Query: 226 FVPQRTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283
P+ T + I+ + + + ++ E + + V +++ E+AA +
Sbjct: 1146 LNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSV--------TMAQVEEAARL---A 1194
Query: 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG--ISGGQKKRVTTGEM 341
+I F+ A EG E T VGD RG +SGGQK+R+
Sbjct: 1195 NIHNFI-AELPEGFE-------------------TRVGD---RGTQLSGGQKQRIAIARA 1231
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401
+V + L +DE ++ LD+ + + +L ++ +G T I + + D I +
Sbjct: 1232 LVRNPKILLLDEATSALDTESEKVVQEALDRA---REGRTCIVIAHRLNTVMNA-DCIAV 1287
Query: 402 ISDGQIVYQGPREHVL 417
+S+G I+ +G ++
Sbjct: 1288 VSNGTIIEKGTHTQLM 1303
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 317 DTMVGDEMLRG--ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSI 374
+T+VGD RG +SGGQK+R+ +V + L +DE ++ LD+ + + +L ++
Sbjct: 545 NTLVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA 601
Query: 375 HILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
KG T I ++ T D II +GQ+V G ++
Sbjct: 602 ---KGRTTI-IIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 29/229 (12%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTXXXXXXXXXXXXXPKKQ 916
L+ VS + G AL+G SG+GK+T+ DV +G ++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLE-VDSPTRKMFIEEVMELVELNPL 975
FA +S ++H N T+ ++ Y+A E ++ R+ ME +E P
Sbjct: 419 --FALVS-----QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQ---AHAMEFIENMP- 467
Query: 976 RQALVGLPGVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
Q L + G +G LS QR+R+ IA L+ + ++ +DE TS LD + + + +
Sbjct: 468 -QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DE 525
Query: 1034 VDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIK 1082
+ +TV+ H+ S +E DE+ ++ G EI GRH+ L +
Sbjct: 526 LQKNKTVLVIAHRLS--TIEQADEILVVDEG--EII--ERGRHADLLAQ 568
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 317 DTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHI 376
DT++G E +SGGQ++RV ++ A L +DE ++ LD+ + I +L +
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE---- 525
Query: 377 LKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
L+ + ++ T + D+I+++ +G+I+ +G +L
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHS 933
G +G SG GK+TL+ ++AG +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM-NDTPPAERGVGMVFQSYALY 87
Query: 934 PNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQR 993
P+++V E++ + L++ +++ + V ++ E+ L L P LS QR
Sbjct: 88 PHLSVAENMSFG------LKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP--KALSGGQR 139
Query: 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDI 1051
+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H D
Sbjct: 140 QRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTH----DQ 194
Query: 1052 VEAF---DELFLLKRG 1064
VEA D++ +L G
Sbjct: 195 VEAMTLADKIVVLDAG 210
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
D + +SGGQ++RV G +V +D+ + LD++ Q+ + + +H G T
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR-LHKRLGRT 186
Query: 382 LISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFL 437
+I + E L D I+++ G++ G LE + + P + VA F+
Sbjct: 187 MIYVTHDQVEAMTLADKIVVLDAGRVAQVG---KPLELYHY-----PADRFVAGFI 234
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 39/255 (15%)
Query: 831 FKPHSITFDEIAYSVDMPQEMM--RPGVLEDKLVL-LNGVSGAFRPGVLTALMGVSGAGK 887
F+P+ I F +++ VD+ +E + P +++D L G R G + ++G +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 888 TTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISG--YCEQNDIHSPNVTVYESLLYS 945
TT + +LAG + K Q A G Y + I S + S Y
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN---SNFYK 452
Query: 946 AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVAN 1005
L PL +++L + N V LS + +R+ IA L+ +
Sbjct: 453 TELLKPL------------GIIDLYDRN-----------VEDLSGGELQRVAIAATLLRD 489
Query: 1006 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI------ 543
Query: 1066 QEIYVGSLGRHSSHL 1080
++ G GRH L
Sbjct: 544 --VFEGEPGRHGRAL 556
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 70/250 (28%)
Query: 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAG 886
H F+ I+ V++P++ L++ V GV+ + G++ ++G +G G
Sbjct: 77 HKCPFNAISI-VNLPEQ------LDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTG 129
Query: 887 KTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQND--------IHSPNVTV 938
KTT + +LAG+ I CE ND +
Sbjct: 130 KTTAVKILAGQ-----------------------LIPNLCEDNDSWDNVIRAFRGNELQN 166
Query: 939 YESLLYSAWLR----------LPLEVDSPTRKMF--IEEVMELVEL-------NPLRQAL 979
Y L + +R LP V R++ ++EV + E+ N L + L
Sbjct: 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL 226
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
LS + +R+ IA L+ F DEP+S LD R V R +R + G+
Sbjct: 227 ------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 280
Query: 1040 VVCTIHQPSI 1049
V+ H ++
Sbjct: 281 VLVVEHDLAV 290
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 306 ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQ 365
+LK LG+ D V D +SGG+ +RV ++ A +DE S LD
Sbjct: 455 LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 366 IVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI---SDGQIVYQGPREHVLEFFKF 422
+ ++R + + T L+ + D+++I SD IV++G
Sbjct: 510 VSRAIRHLMEKNEKTALV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPP 558
Query: 423 MGFECPKRKGVADFLQEV--TSRKDQE 447
MG R+G+ FL V T R+D +
Sbjct: 559 MGM----REGMNRFLASVGITFRRDPD 581
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
D L +SGG+ +RV ++ A F DE S+ LD ++ +R+ + K
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 382 LISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPK--RKGVADFLQ 438
++ + D D+I +VY P + + F PK R G+ +FLQ
Sbjct: 283 VV---EHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 326
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 27/209 (12%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS-GYCEQNDIH 932
G +TAL+G SG+GK+T++ +L + + R G Q I
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL 460
Query: 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLR---------QALVGL 982
+ ++ E++ Y A D P+ + EE+ + E+ N + +VG
Sbjct: 461 F-SCSIAENIAYGA--------DDPS-SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 510
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+
Sbjct: 511 KGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLV 568
Query: 1043 TIHQPSI----DIVEAFDELFLLKRGGQE 1067
H S ++V D+ + + G E
Sbjct: 569 IAHHLSTIKNANMVAVLDQGKITEYGKHE 597
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 104/255 (40%), Gaps = 37/255 (14%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHD 222
P+R + + I +D S I G +T L+GP S D + SG ++ +GHD
Sbjct: 383 PARPE-VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHD 438
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+ + P + I G S+ +L S E A D
Sbjct: 439 IRQLNPVWLRSKI-----------------------GTVSQEPILFSCSIAENIAYGADD 475
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
P A E Q + V + + I +T+VG++ + +SGGQK+R+ +
Sbjct: 476 PS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARAL 529
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
+ + L +DE ++ LD+ + + +L + ++ G T++ + T + + ++
Sbjct: 530 LKNPKILLLDEATSALDAENEYLVQEALDR---LMDGRTVLVIAHHL-STIKNANMVAVL 585
Query: 403 SDGQIVYQGPREHVL 417
G+I G E +L
Sbjct: 586 DQGKITEYGKHEELL 600
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 27/209 (12%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS-GYCEQNDIH 932
G +TAL+G SG+GK+T++ +L + + R G Q I
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL 429
Query: 933 SPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLR---------QALVGL 982
+ ++ E++ Y A D P+ + EE+ + E+ N + +VG
Sbjct: 430 F-SCSIAENIAYGA--------DDPS-SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGE 479
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
GV LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+
Sbjct: 480 KGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLV 537
Query: 1043 TIHQPSI----DIVEAFDELFLLKRGGQE 1067
H+ S ++V D+ + + G E
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEYGKHE 566
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 37/255 (14%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHD 222
P+R + + I +D S I G +T L+GP S D + SG ++ +GHD
Sbjct: 352 PARPE-VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHD 407
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+ + P + I G S+ +L S E A D
Sbjct: 408 IRQLNPVWLRSKI-----------------------GTVSQEPILFSCSIAENIAYGADD 444
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
P A E Q + V + + I +T+VG++ + +SGGQK+R+ +
Sbjct: 445 PS-----SVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL-LSGGQKQRIAIARAL 498
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
+ + L +DE ++ LD+ + + +L + ++ G T++ ++ T + + ++
Sbjct: 499 LKNPKILLLDEATSALDAENEYLVQEALDR---LMDGRTVL-VIAHRLSTIKNANMVAVL 554
Query: 403 SDGQIVYQGPREHVL 417
G+I G E +L
Sbjct: 555 DQGKITEYGKHEELL 569
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 39/255 (15%)
Query: 831 FKPHSITFDEIAYSVDMPQEMM--RPGVLEDKLVL-LNGVSGAFRPGVLTALMGVSGAGK 887
F+P+ I F +++ VD+ +E + P +++D L G R G + ++G +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 888 TTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISG--YCEQNDIHSPNVTVYESLLYS 945
TT + +LAG + K Q A G Y + I S + S Y
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLN---SNFYK 438
Query: 946 AWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVAN 1005
L PL +++L + N V LS + +R+ IA L+ +
Sbjct: 439 TELLKPL------------GIIDLYDRN-----------VEDLSGGELQRVAIAATLLRD 475
Query: 1006 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
I +DEP++ LD V R +R+ ++ + + I D L
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI------ 529
Query: 1066 QEIYVGSLGRHSSHL 1080
++ G GRH L
Sbjct: 530 --VFEGEPGRHGRAL 542
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 70/250 (28%)
Query: 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSG-------AFRPGVLTALMGVSGAG 886
H F+ I+ V++P++ L++ V GV+ + G++ ++G +G G
Sbjct: 63 HKCPFNAISI-VNLPEQ------LDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTG 115
Query: 887 KTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQND--------IHSPNVTV 938
KTT + +LAG+ I CE ND +
Sbjct: 116 KTTAVKILAGQ-----------------------LIPNLCEDNDSWDNVIRAFRGNELQN 152
Query: 939 YESLLYSAWLR----------LPLEVDSPTRKMF--IEEVMELVEL-------NPLRQAL 979
Y L + +R LP V R++ ++EV + E+ N L + L
Sbjct: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDREL 212
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
LS + +R+ IA L+ F DEP+S LD R V R +R + G+
Sbjct: 213 ------HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKA 266
Query: 1040 VVCTIHQPSI 1049
V+ H ++
Sbjct: 267 VLVVEHDLAV 276
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
D L +SGG+ +RV ++ A F DE S+ LD ++ +R+ + K
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 382 LISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPK--RKGVADFLQ 438
++ + D D+I +VY P + + F PK R G+ +FLQ
Sbjct: 269 VV---EHDLAVLDYLSDVI-----HVVYGEPGVYGI-------FSKPKGTRNGINEFLQ 312
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 25/147 (17%)
Query: 306 ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQ 365
+LK LG+ D V D +SGG+ +RV ++ A +DE S LD
Sbjct: 441 LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 495
Query: 366 IVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI---SDGQIVYQGPREHVLEFFKF 422
+ ++R + + T L+ + D+++I SD IV++G
Sbjct: 496 VSRAIRHLMEKNEKTALV-----------VEHDVLMIDYVSDRLIVFEGEPGRHGRALPP 544
Query: 423 MGFECPKRKGVADFLQEV--TSRKDQE 447
MG R+G+ FL V T R+D +
Sbjct: 545 MGM----REGMNRFLASVGITFRRDPD 567
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 21/159 (13%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGRKT---------XXXXXXXXXXXXXPKKQETFARI 922
+ G L+G SG GKTT + ++AG + P K A +
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
Q+ P++TVY+++ + PL++ R+ + V E+ EL L + L
Sbjct: 87 F----QSYALYPHMTVYDNIAF------PLKLRKVPRQEIDQRVREVAELLGLTELLNRK 136
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
P LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 137 P--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
R +SGGQ++RV G +V Q MDE + LD+ ++ L++ L G T I +
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYV 196
Query: 386 LQPAPETYDLFDDIILISDGQIVYQGPREHV 416
E + D I +++ G + G + V
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 19/211 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTXXXXXXXXXXXXXPKKQETF 919
+ GVS R G + L+G SG+GKTT++ ++AG K P+K
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R G QN ++TVY+++ + LR E P +M V EL+ L
Sbjct: 87 -RNVGLVFQNYALFQHMTVYDNVSFG--LR---EKRVPKDEMDA-RVRELLRFMRLESYA 139
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1038
P LS Q++R+ +A L P ++ DEP + +D + + VR D G
Sbjct: 140 NRFP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGV 197
Query: 1039 TVVCTIHQPSIDIVEAFDELFLLKRGGQEIY 1069
T V H + +E D + +L G E +
Sbjct: 198 TSVFVTHDQE-EALEVADRVLVLHEGNVEQF 227
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 44/248 (17%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQ-R 230
++ VS IR G M LLGP S + G V G + + PQ R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKR 87
Query: 231 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMK 290
+ Q+ MTV + ++F R + V P ++D ++
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRV--------------------PKDEMDARVR 127
Query: 291 AAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALF 350
+L+ + L+ A+ + +SGGQ++RV + Q L
Sbjct: 128 E--------------LLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLL 168
Query: 351 MDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQ 410
DE +D+ ++ +RQ +H G T + + E ++ D ++++ +G +
Sbjct: 169 FDEPFAAIDTQIRRELRTFVRQ-VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF 227
Query: 411 GPREHVLE 418
G E V E
Sbjct: 228 GTPEEVYE 235
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 38/218 (17%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTXXXXXXXXXXXXXPKK 915
+L ++ + G A +G+SG GK+TL+ DV +G+ +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 916 QETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL 975
Q G +Q++I + TV E++L L P D EEV+E ++
Sbjct: 416 Q------IGLVQQDNILFSD-TVKENIL----LGRPTATD--------EEVVEAAKMANA 456
Query: 976 RQALVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1026
++ LP G G LS Q++RL+IA + NP I+ +DE TS LD + +I+
Sbjct: 457 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516
Query: 1027 MRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + + RT + H+ S + D++ +++ G
Sbjct: 517 QEAL-DVLSKDRTTLIVAHRLS--TITHADKIVVIENG 551
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 103/251 (41%), Gaps = 47/251 (18%)
Query: 171 ILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFV--P 228
ILKD++ I G +G D + SG++ +GH++ +F+
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 412
Query: 229 QRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVF 288
R + Q DN + TV+E + +P
Sbjct: 413 LRNQIGLVQQDNILFSDTVKENILLG-------------------------RP------- 440
Query: 289 MKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQA 348
A E EA+ + + I+ L DT VG+ ++ +SGGQK+R++ + +
Sbjct: 441 -TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPI 498
Query: 349 LFMDEISTGLDSSTTFQIVNSLRQSIHILKG--TTLISLLQPAPETYDLFDDIILISDGQ 406
L +DE ++ LD + + +++++ +L TTLI + + T+ D I++I +G
Sbjct: 499 LILDEATSALDLESE----SIIQEALDVLSKDRTTLIVAHRLSTITHA--DKIVVIENGH 552
Query: 407 IVYQGPREHVL 417
IV G ++
Sbjct: 553 IVETGTHRELI 563
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 26/222 (11%)
Query: 853 RPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXX 912
RP VL +L G++ RPG +TAL+G +G+GK+T+ +L
Sbjct: 27 RPDVL-----VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL 81
Query: 913 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
P+ + + + ++ E++ Y T+K +EE+
Sbjct: 82 PQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGL-----------TQKPTMEEITAAAVK 130
Query: 973 NPLRQALVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1023
+ + GLP S LS QR+ + +A L+ P ++ +D+ TS LDA +
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1024 AIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGG 1065
V + + + + V I Q + +VE D + L+ G
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/261 (21%), Positives = 102/261 (39%), Gaps = 47/261 (18%)
Query: 163 PSRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHD 222
P+R L +L+ ++ +RPG +T L+GP S + G++ +G
Sbjct: 25 PNRPDVL-VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKP 80
Query: 223 MDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPD 282
+ PQ Y+ + + VG ++ + A G+
Sbjct: 81 L----PQYEHRYLHR------------------QVAAVGQEPQVFGRSLQENIAYGLTQK 118
Query: 283 PDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
P ++ AA G + I GL DT V DE +SGGQ++ V +
Sbjct: 119 PTMEEITAAAVKSGAHSF--------ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARAL 169
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSL-----RQSIHILKGTTLISLLQPAPETYDLFD 397
+ L +D+ ++ LD+++ Q+ L R S +L T +SL++ A D
Sbjct: 170 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA-------D 222
Query: 398 DIILISDGQIVYQGPREHVLE 418
I+ + G I G + ++E
Sbjct: 223 HILFLEGGAIREGGTHQQLME 243
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1046
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQ++RV+ + L DE ++ LD +++ ++Q +G T++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTH 211
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHV 416
+ +I + G+I +G E V
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 40/215 (18%)
Query: 857 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ 916
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ K +
Sbjct: 11 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF----KGK 65
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV------ 970
+ A SP E + + + P+E+ + + F++ + V
Sbjct: 66 DLLAL-----------SPEDRAGEGIFMA--FQYPVEIPGVSNQFFLQTALNAVRSYRGQ 112
Query: 971 ---------ELNPLRQALVGLP------GVS-GLSTEQRKRLTIAVELVANPSIIFMDEP 1014
+L + AL+ +P V+ G S ++KR I V P + +DE
Sbjct: 113 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172
Query: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
SGLD A +V V + D R+ + H I
Sbjct: 173 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 207
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQI---VNSLR 371
G SGG+KKR +M V + +DE +GLD + VNSLR
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 192
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 40/215 (18%)
Query: 857 LEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ 916
+EDK +L G+S PG + A+MG +G+GK+TL LAGR+ K +
Sbjct: 30 VEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF----KGK 84
Query: 917 ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELV------ 970
+ A SP E + + + P+E+ + + F++ + V
Sbjct: 85 DLLAL-----------SPEDRAGEGIFMA--FQYPVEIPGVSNQFFLQTALNAVRSYRGQ 131
Query: 971 ---------ELNPLRQALVGLP------GVS-GLSTEQRKRLTIAVELVANPSIIFMDEP 1014
+L + AL+ +P V+ G S ++KR I V P + +DE
Sbjct: 132 ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 191
Query: 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
SGLD A +V V + D R+ + H I
Sbjct: 192 DSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQI---VNSLR 371
G SGG+KKR +M V + +DE +GLD + VNSLR
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 12/213 (5%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTXXXXXXXXXXXXXPKKQ 916
E+ + L V+ + G ++MG SG+GK+T+++++ K
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 917 ETFARIS----GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
+ +I G+ Q P +T E++ + + R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
+ + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 1033 -TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ G+TVV H I++ + + LK G
Sbjct: 191 LNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 91/213 (42%), Gaps = 12/213 (5%)
Query: 858 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTXXXXXXXXXXXXXPKKQ 916
E+ + L V+ + G ++MG SG+GK+T+++++ K
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 917 ETFARIS----GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
+ +I G+ Q P +T E++ + + R+ E +++ EL
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
+ + LS Q++R+ IA L NP II D+PT LD++ +M+ ++
Sbjct: 135 ----EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 1033 -TVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ G+TVV H I++ + + LK G
Sbjct: 191 LNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 32/220 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L+GVS + G +T ++G +G+GK+TL++V+ G K+ A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP--AELY 80
Query: 924 GYCEQNDIHSPN----VTVYESLL---------------YSAWLRLPLEVDSPTRKMFIE 964
Y +P +TV E+LL Y W +P E + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW--IPKE-EEMVEKAF-- 135
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
+++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1025 IVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ V G T + H+ I ++ D L+++ G
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 87/251 (34%), Gaps = 43/251 (17%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRT 231
L VS + G +TL++GP S + GRV + D+ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 232 AAY----ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
Y Q + EMTV E L C G P +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---------------------ESPLNSL 118
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
F K + +E IL+ L L D G+ +SGGQ K V G ++ +
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHIL----KGTTLISLLQPAPETYDLFDDIILIS 403
+ MDE G+ I N H+L KG T + + + D + ++
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227
Query: 404 DGQIVYQGPRE 414
+GQI+ +G E
Sbjct: 228 NGQIIAEGRGE 238
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 37/190 (19%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----RKTXXXXXXXXXXXXXPKKQETF 919
L+ +S G ++G +GAGKT ++++AG P+K +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI- 74
Query: 920 ARISGYCEQNDIHSPNVTVYESLLYSAWLRL---PLEVDSPTRKMFIEEVMELVELNPLR 976
+ QN P++ V ++L + ++ P V R + IE L++ NPL
Sbjct: 75 ----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH---LLDRNPL- 126
Query: 977 QALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
LS +++R+ +A LV NP I+ +DEP S LD R T +
Sbjct: 127 ----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQEN 165
Query: 1037 GRTVVCTIHQ 1046
R ++ +H+
Sbjct: 166 AREMLSVLHK 175
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 56/224 (25%)
Query: 213 SGRVTYNGHDMDEFVPQR-TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271
SGR+ +G D+ + P++ A++ Q+ + M V++ L F R + +
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----------- 102
Query: 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRG---I 328
DP LD D + + R +
Sbjct: 103 ---------KDPK-------------------------RVLDTARDLKIEHLLDRNPLTL 128
Query: 329 SGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQP 388
SGG+++RV +V + L +DE + LD T + + +H T++ +
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ-ENAREMLSVLHKKNKLTVLHITHD 187
Query: 389 APETYDLFDDIILISDGQIVYQGPREHVLE------FFKFMGFE 426
E + D I ++ DG+++ G E + E F+GFE
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFE 231
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 113/281 (40%), Gaps = 53/281 (18%)
Query: 816 EVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGV 875
E A + LP S++F+ + + E+ +L+GV+ + +PG
Sbjct: 322 EKPAIEEADNALALPNVEGSVSFENVEFRY-----------FENTDPVLSGVNFSVKPGS 370
Query: 876 LTALMGVSGAGKTTLMDVLA-------GRKTXXXXXXXXXXXXXPKKQETFARISGYCEQ 928
L A++G +G+GK+TLM+++ GR K ++ IS ++
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-----KLKDLRGHISAVPQE 425
Query: 929 NDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP----- 983
+ S T+ E+L W R D E++E ++ + ++ LP
Sbjct: 426 TVLFSG--TIKENL---KWGREDATDD---------EIVEAAKIAQIHDFIISLPEGYDS 471
Query: 984 ----GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
G S Q++RL+IA LV P ++ +D+ TS +D ++ ++ T
Sbjct: 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTT 531
Query: 1040 VVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHL 1080
+ T P+ + D++ +L G V G H L
Sbjct: 532 FIITQKIPTALLA---DKILVLHEGK----VAGFGTHKELL 565
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
R SGGQK+R++ +V + L +D+ ++ +D T +I++ L++ KG T +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---KGCTTFII 534
Query: 386 LQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFK 421
Q P T L D I+++ +G++ G + +LE K
Sbjct: 535 TQKIP-TALLADKILVLHEGKVAGFGTHKELLEHCK 569
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 879 LMGVSGAGKTTLMDVLAG-RKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVT 937
L+G +GAGK+ ++++AG K P E R G+ Q+ P+++
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER--RGIGFVPQDYALFPHLS 86
Query: 938 VYESLLYSAWLRLPLEVDSPTRKMFIEE---VMELVELNPLRQALVGLPGVSGLSTEQRK 994
VY ++ Y LR V+ R + E + L++ P R LS +R+
Sbjct: 87 VYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGERQ 133
Query: 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
R+ +A LV P ++ +DEP S +D + ++M +R
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELR 170
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 32/220 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L+GVS + G +T ++G +G+GK+TL++V+ G K+ A +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP--AELY 80
Query: 924 GYCEQNDIHSPN----VTVYESLL---------------YSAWLRLPLEVDSPTRKMFIE 964
Y +P +TV E+LL Y W +P E + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKW--IPKE-EEMVEKAF-- 135
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
+++E ++L+ L G LS Q K + I L+ NP +I MDEP +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 1025 IVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ V G T + H+ I ++ D L+++ G
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 91/251 (36%), Gaps = 43/251 (17%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRT 231
L VS + G +TL++GP S + GRV + D+ P
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 232 AAY----ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
Y Q + EMTV E L ++ E++ E P +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLNSL 118
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
F K + +E IL+ L L D G+ +SGGQ K V G ++ +
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHIL----KGTTLISLLQPAPETYDLFDDIILIS 403
+ MDE G+ I N H+L KG T + + + D + ++
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227
Query: 404 DGQIVYQGPRE 414
+GQI+ +G E
Sbjct: 228 NGQIIAEGRGE 238
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1046
LS Q++R+ IA L NP II DEPT LD++ + + ++ + G+TVV H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH- 204
Query: 1047 PSIDIVEAFDELFLLKRGGQE 1067
I++ + + LK G E
Sbjct: 205 -DINVARFGERIIYLKDGEVE 224
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 32/220 (14%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L+GVS + G +T ++G +G+GK+TL++V+ G K+ A +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP--AELY 80
Query: 924 GYCEQNDIHSPN----VTVYESLL---------------YSAWLRLPLEVDSPTRKMFIE 964
Y +P +TV E+LL Y W +P E + K F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKW--IPKE-EEMVEKAF-- 135
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
+++E ++L+ L G LS Q K + I L+ NP +I MD+P +G+ A
Sbjct: 136 KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 1025 IVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ V G T + H+ I ++ D L+++ G
Sbjct: 191 DIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNG 229
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 91/251 (36%), Gaps = 43/251 (17%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRT 231
L VS + G +TL++GP S + GRV + D+ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 232 AAY----ISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
Y Q + EMTV E L ++ E++ E P +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENL--------------LIGEINPGE-------SPLNSL 118
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
F K + +E IL+ L L D G+ +SGGQ K V G ++ +
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHIL----KGTTLISLLQPAPETYDLFDDIILIS 403
+ MD+ G+ I N H+L KG T + + + D + ++
Sbjct: 174 MIVMDQPIAGVAPGLAHDIFN------HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227
Query: 404 DGQIVYQGPRE 414
+GQI+ +G E
Sbjct: 228 NGQIIAEGRGE 238
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 31/235 (13%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L ++ +PG AL+G +G+GKTT++++L K + + R
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLR- 428
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
S + + +++L+S ++ L+ +P EE+ E +L + L
Sbjct: 429 ---------SSIGIVLQDTILFSTTVKENLKYGNPGATD--EEIKEAAKLTHSDHFIKHL 477
Query: 983 P---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
P LS QR+ L I +ANP I+ +DE TS +D + + +
Sbjct: 478 PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537
Query: 1034 VDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIK---YFE 1085
++ G+T + H+ ++ ++ D + +L+ G + +G+H + K Y+E
Sbjct: 538 ME-GKTSIIIAHR--LNTIKNADLIIVLRDG----EIVEMGKHDELIQKRGFYYE 585
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 135/317 (42%), Gaps = 50/317 (15%)
Query: 104 LLKLKNRIDRVGISLPTIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILP 163
L +L N+ + + ++L + E FE L++E E + P + G + N+
Sbjct: 310 LNELSNQFNMIQMALASAERIFEILDLEEE-----KDDPDAVELRE--VRGEIEFKNVWF 362
Query: 164 SRKKHLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDM 223
S K +LKD++ I+PG+ L+GP S D G++ +G D+
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDI 419
Query: 224 DEFVPQ--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
+ R++ I D + TV+E L + G+ E + E ++ +
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG----NPGATDEEIKEAAKLTHS----- 470
Query: 282 DPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEM 341
D F+K EG E +V+TD G+++ S GQ++ +
Sbjct: 471 ----DHFIKHLP-EGYE-TVLTDN---------------GEDL----SQGQRQLLAITRA 505
Query: 342 MVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIIL 401
+ + L +DE ++ +D+ T I ++ + +++G T I ++ T D II+
Sbjct: 506 FLANPKILILDEATSNVDTKTEKSIQAAMWK---LMEGKTSI-IIAHRLNTIKNADLIIV 561
Query: 402 ISDGQIVYQGPREHVLE 418
+ DG+IV G + +++
Sbjct: 562 LRDGEIVEMGKHDELIQ 578
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 21/159 (13%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGRKTXXX---------XXXXXXXXXXPKKQETFARI 922
+ G L+G SG GKTT + +AG + P K+ A +
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXV 89
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
Q+ P+ TVY+++ + PL++ ++ + V E+ E L + L
Sbjct: 90 F----QSYALYPHXTVYDNIAF------PLKLRKVPKQEIDKRVREVAEXLGLTELLNRK 139
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 140 P--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISL 385
R +SGGQ++RV G ++ + DE + LD+ + L++ L G T I +
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL-GVTTIYV 199
Query: 386 LQPAPETYDLFDDIILISDGQIVYQGPREHV 416
E D I + + G++ G + V
Sbjct: 200 THDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 11/178 (6%)
Query: 859 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG------RKTXXXXXXXXXXXXX 912
D +L GV+ G + ALMG +GAGK+TL +LAG +
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73
Query: 913 PKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL 972
P ++ + Q + P VT+ L + +L EV +++ +EL++
Sbjct: 74 PDERARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDW 131
Query: 973 NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
+ ++ + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 132 D---ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 326 RGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQI---VNSLR----QSIHILK 378
G SGG+KKR +++V +DE +GLD + VN++R ++ I
Sbjct: 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201
Query: 379 GTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRK 431
+++ +QP D + ++ DG++V G E LE + G+E K K
Sbjct: 202 YQRILNYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGYEWLKEK 245
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1047
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 1048 SIDIVEAFDELFLLKRGGQEIYVGS 1072
++ D + +L++ G++++ G+
Sbjct: 201 ET-VINHVDRVVVLEK-GKKVFDGT 223
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGG+K+RV ++V L +DE GLD ++ + + + G T+I +
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 198
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLE 418
+ D ++++ G+ V+ G R LE
Sbjct: 199 DIETVINHVDRVVVLEKGKKVFDGTRMEFLE 229
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 988 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1047
LS +++R+ IA +V P I+ +DEP GLD ++R V G+TV+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 1048 SIDIVEAFDELFLLKRGGQEIYVGS 1072
++ D + +L++ G++++ G+
Sbjct: 199 ET-VINHVDRVVVLEK-GKKVFDGT 221
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGG+K+RV ++V L +DE GLD ++ + + + G T+I +
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISH 196
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLE 418
+ D ++++ G+ V+ G R LE
Sbjct: 197 DIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L G++ PG +TAL+G +G+GK+T+ +L + P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 923 SGYCEQNDIHSPNVTV-YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
+ + +H+ V E LL+ R + TR +EE+ + + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISG 141
Query: 982 LP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
P G +G LS QR+ + +A L+ P ++ +D+ TS LDA V R +
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 1033 TVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + RTV+ HQ + + E + LK G
Sbjct: 202 SPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 94/251 (37%), Gaps = 36/251 (14%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFV 227
++ +L+ ++ + PG++T L+GP S + G+V +G +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPL---- 83
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
Q+D+H + VG + R A G+ P ++
Sbjct: 84 --------VQYDHHY----------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
A G D+I G DT VG E +SGGQ++ V ++ +
Sbjct: 126 ITAVAMESGAH-----DFIS---GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L +D+ ++ LD+ ++ L +S T L+ Q + + I+ + +G +
Sbjct: 177 LLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAERAHHILFLKEGSV 234
Query: 408 VYQGPREHVLE 418
QG ++E
Sbjct: 235 CEQGTHLQLME 245
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 39/207 (18%)
Query: 214 GRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271
G + +GHD+ E+ R + + H+ TV +A++ R E S
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA--------RTEQYS--- 446
Query: 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGG 331
RE+ E + D+I K +D DT++G+ + +SGG
Sbjct: 447 -REQIE-----------------EAARMAYAMDFINK---MDNGLDTVIGENGVL-LSGG 484
Query: 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPE 391
Q++R+ ++ + L +DE ++ LD+ + I +L + L+ ++
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE----LQKNRTSLVIAHRLS 540
Query: 392 TYDLFDDIILISDGQIVYQGPREHVLE 418
T + D+I+++ DG IV +G +LE
Sbjct: 541 TIEKADEIVVVEDGVIVERGTHNDLLE 567
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCE--QNDI 931
G AL+G SG+GK+T+ ++ + ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 932 HSPNVTVYESLLYSAWLRLPLE-VDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG--L 988
H N TV ++ Y+ + E ++ R + M+ + N + L + G +G L
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQIEEAARMAY---AMDFI--NKMDNGLDTVIGENGVLL 481
Query: 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1048
S QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS 540
Query: 1049 IDIVEAFDELFLLKRG 1064
+E DE+ +++ G
Sbjct: 541 --TIEKADEIVVVEDG 554
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 25/184 (13%)
Query: 868 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXP-KKQETFARISGYC 926
+G + G + ++G +G GKTT +L G T K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTV 347
Query: 927 EQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVS 986
+Q + N + ++L S+W F EEV + + L+ L ++ V+
Sbjct: 348 QQ---YLENAS-KDALSTSSW--------------FFEEVTKRLNLHRLLES-----NVN 384
Query: 987 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI-H 1045
LS + ++L IA L + +D+P+S LD IV + ++ + V I H
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 1046 QPSI 1049
SI
Sbjct: 445 DLSI 448
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 35/244 (14%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISG---YCEQ 928
+ + ++G +G GKTT++ +LAG K E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGE----IIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78
Query: 929 NDIHSPNVTVYESLLY----SAWLR-----LPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
+++S + + + Y S +L+ + ++D +K +EV EL+ + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK---DEVKELLNMTNLWNKD 135
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1039
+ GL +RL +A L+ + D+P+S LD R + + +R + +
Sbjct: 136 ANILSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKY 189
Query: 1040 VVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKYFEGIRGVSKIKDGYNP 1099
V+ H + +++ +L + G +Y GR S K + G++ GY P
Sbjct: 190 VIVVDH--DLIVLDYLTDLIHIIYGESSVY----GRVS----KSYAARVGINNFLKGYLP 239
Query: 1100 ATWM 1103
A M
Sbjct: 240 AENM 243
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 104/248 (41%), Gaps = 43/248 (17%)
Query: 172 LKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFVPQRT 231
L+DVS + PG+ L+GP + D S SG + +G D + Q T
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQD----ISQVT 122
Query: 232 AAYISQHDNHIGEMTV--RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFM 289
A + H + + TV +T+A + R V + ++ E+ +AAGI D M
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND---EVEAAAQAAGIH-----DAIM 174
Query: 290 KAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQAL 349
A EG T VG+ L+ +SGG+K+RV ++ +
Sbjct: 175 --AFPEGYR-------------------TQVGERGLK-LSGGEKQRVAIARTILKAPGII 212
Query: 350 FMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVY 409
+DE ++ LD+S I SL + + T I + + D I++I DG IV
Sbjct: 213 LLDEATSALDTSNERAIQASLAK---VCANRTTIVVAHRLSTVVNA-DQILVIKDGCIVE 268
Query: 410 QGPREHVL 417
+G E +L
Sbjct: 269 RGRHEALL 276
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 10/217 (4%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L VS PG AL+G SGAGK+T++ +L + + R
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH 129
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLP 983
D N T+ +++ Y EV++ + I + ++ + VG
Sbjct: 130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA--IMAFPEGYRTQVGER 187
Query: 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1043
G+ LS +++R+ IA ++ P II +DE TS LD + ++ V RT +
Sbjct: 188 GLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-VCANRTTIVV 245
Query: 1044 IHQPSIDIVEAFDELFLLKRGGQEIYVGSLGRHSSHL 1080
H+ S +V A D++ ++K G + GRH + L
Sbjct: 246 AHRLST-VVNA-DQILVIKDG----CIVERGRHEALL 276
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 872 RPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDI 931
RPG + L+G +G GK+T + +LAG++ P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP----PEWQEIIKYFRGSELQNYF 156
Query: 932 HSPNVTVYESLLYSAWL-RLPLEVDSPTRKMFIEEVMEL-VELNP---------LRQALV 980
++++ ++ +P + P +K + E+++L +E +P L+ V
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQK--VGELLKLRMEKSPEDVKRYIKILQLENV 214
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1040
+ LS + +R I + V + DEP+S LD + + +R+ + + V
Sbjct: 215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274
Query: 1041 VCTIHQPSI 1049
+C H S+
Sbjct: 275 ICVEHDLSV 283
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 24/169 (14%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+LN G F + +MG +G GKTTL+ +LAG K Q+ +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
G Q L + R F+ + + PLR +
Sbjct: 427 PGTVRQ-------------LFFKK-----------IRGQFLNPQFQTDVVKPLRIDDIID 462
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1031
V LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 13/189 (6%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA--GRKTXXXXXXXXXXXXXPKKQETFA 920
+L G+S + + G +++G SG+GK+TL+ +L T ++E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 921 ---RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQ 977
R G+ Q P +T E+++ L++ P ++ L EL L
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPM-----LKMGKPKKEAKERGEYLLSELG-LGD 132
Query: 978 ALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
L P LS +++R+ IA L P ++F DEPT LD+ VM + G
Sbjct: 133 KLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 1038 RTVVCTIHQ 1046
++V H+
Sbjct: 191 TSIVMVTHE 199
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 264 HEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDE 323
H ++ EL+ E ++ V M +EA +Y+L LGL GD+
Sbjct: 91 HYLIPELTALE---------NVIVPMLKMGKPKKEAKERGEYLLSELGL--------GDK 133
Query: 324 MLRG---ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGT 380
+ R +SGG+++RV + LF DE + LDS+ T ++++ + I +G
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF---LKINEGG 190
Query: 381 TLISLLQPAPETYDLFDDIILISDGQIV 408
T I ++ E +L + + DG++V
Sbjct: 191 TSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 39/206 (18%)
Query: 214 GRVTYNGHDMDEFV--PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELS 271
G + +GHD+ E+ R + + H+ TV +A+ AR + E S
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAY-ARTE----------EYS 446
Query: 272 RREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGG 331
R + E + D+I K +D DT++G+ + +SGG
Sbjct: 447 REQ------------------IEEAARMAYAMDFINK---MDNGLDTIIGENGVL-LSGG 484
Query: 332 QKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPE 391
Q++R+ ++ + L +DE ++ LD+ + I +L + L+ ++
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE----LQKNRTSLVIAHRLS 540
Query: 392 TYDLFDDIILISDGQIVYQGPREHVL 417
T + D+I+++ DG IV +G +L
Sbjct: 541 TIEQADEIVVVEDGIIVERGTHSELL 566
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 19/215 (8%)
Query: 874 GVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCE--QNDI 931
G AL+G SG+GK+T+ ++ + ++ T A + ++
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 932 HSPNVTVYESLLYSAWLRLPLE-VDSPTRKMFIEEVMELVELNPLRQALVGLPGVSG--L 988
H N TV ++ Y+ E ++ R + M+ + N + L + G +G L
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQIEEAARMAY---AMDFI--NKMDNGLDTIIGENGVLL 481
Query: 989 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1048
S QR+R+ IA L+ + I+ +DE TS LD + + + + + RT + H+ S
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKNRTSLVIAHRLS 540
Query: 1049 IDIVEAFDELFLLKRGGQEIYVGSLGRHSSHLIKY 1083
+E DE+ +++ G + G HS L ++
Sbjct: 541 --TIEQADEIVVVEDG----IIVERGTHSELLAQH 569
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 10/185 (5%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L G+S G + L+G +GAGKTT + +++ ++ ++
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVME-LVELNPLRQALVG 981
Y + N+ E L + A + IEE++E E+ L + +
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGF-------YASSSSEIEEMVERATEIAGLGEKI-- 140
Query: 982 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
VS S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 1042 CTIHQ 1046
+ H
Sbjct: 201 VSSHN 205
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 328 ISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQ 387
+SGGQK+RV + + L DE ++ LD +TT I+ L+ I+ G T++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK-DINRRLGLTILLITH 199
Query: 388 PAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQE 447
+ D + +IS+G+++ Q V F PK F+Q E
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTLHLDIPE 251
Query: 448 QYWVH-KEEPY 457
Y + EP+
Sbjct: 252 DYQERLQAEPF 262
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 986 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTI 1044
+ LS QR+ + IA + + +I +DEPTS LD IV+ + + + TVV T
Sbjct: 127 TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
Query: 1045 HQPSIDIVEAFDELFLLKRG 1064
HQP+ + A L L K+
Sbjct: 187 HQPNQVVAIANKTLLLNKQN 206
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 963 IEEVMELVEL-NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021
+EEV++ +EL N L + + LS + +R+ IA L+ N + F DEP+S LD R
Sbjct: 139 LEEVVKALELENVLERE------IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR 192
Query: 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
R +R + G++V+ H ++
Sbjct: 193 QRLNAARAIRRLSEEGKSVLVVEHDLAV 220
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 89/235 (37%), Gaps = 27/235 (11%)
Query: 831 FKPHSITFDEIAYSVDMPQEMM--RPGVLED-KLVLLNGVSGAFRPGVLTALMGVSGAGK 887
F+P+ I F + V++ +E + P +++D L G + G + ++G +G GK
Sbjct: 266 FRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGK 325
Query: 888 TTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAW 947
TT + LAG + K Q A G + + + + S Y
Sbjct: 326 TTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYEL-LSKIDASKLNSNFYKTE 384
Query: 948 LRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPS 1007
L PL + ++ EV EL S + +R+ IA L+ +
Sbjct: 385 LLKPLGIID----LYDREVNEL-------------------SGGELQRVAIAATLLRDAD 421
Query: 1008 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062
I +DEP++ LD V R +R+ + + + I D L + +
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSDRLXVFE 476
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 13/148 (8%)
Query: 879 LMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPK---KQETFARISGYCEQNDIH--S 933
L G++GAGKTTL+++L + K ET + G+ + +
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQ 111
Query: 934 PNVTVYESLLYSAWLRLPL--EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE 991
V + ++ A+ + + ++D R ++++LV + Q +G LST
Sbjct: 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLKLVGXSAKAQQYIGY-----LSTG 165
Query: 992 QRKRLTIAVELVANPSIIFMDEPTSGLD 1019
+++R+ IA L P ++ +DEP +GLD
Sbjct: 166 EKQRVXIARALXGQPQVLILDEPAAGLD 193
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 306 ILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQ 365
+LK++G A +G +S G+K+RV + G Q L +DE + GLD
Sbjct: 145 LLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 366 IVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVL 417
+++ L I + E F I+L+ DGQ + QG E +L
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFA-- 920
+LN +S + PG + ++G SG GKTTL+ LAG + K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 921 -RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQAL 979
R GY Q + P++TVY ++ Y + + + IE ++E L
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLE----------L 125
Query: 980 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
G+ ++G LS Q++R +A L +P +I +DEP S LD
Sbjct: 126 TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLL 386
+SGGQK+RV + + L D+ ++ LD +TT I+ L+ I+ G T++ +
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLTILLIT 221
Query: 387 QPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQ 446
+ D + +IS+G+++ Q V F PK F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTLHLDIP 273
Query: 447 EQYWVH-KEEPY 457
E Y + EP+
Sbjct: 274 EDYQERLQAEPF 285
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 10/137 (7%)
Query: 322 DEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTT 381
D +SGGQK+RV + + L D+ ++ LD +TT I+ L+ I+ G T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLK-DINRRLGLT 216
Query: 382 LISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVT 441
++ + + D + +IS+G+++ Q V F PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 268
Query: 442 SRKDQEQYWVH-KEEPY 457
E Y + EP+
Sbjct: 269 HLDIPEDYQERLQAEPF 285
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
LNG++ + G L A++G G GK++L+ L Q+ +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWI--- 77
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPL---RQALV 980
QND ++ E++L+ L + P + I+ L +L L + +
Sbjct: 78 ----QND------SLRENILFGCQL------EEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 981 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1030
G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 122 GEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 980 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLL-----KRGGQEIYVGS 1072
G TV+ H ++D+++ D + L RGGQ + VG+
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 980 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLL-----KRGGQEIYVGS 1072
G TV+ H ++D+++ D + L RGGQ + VG+
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVGT 634
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L G++ PG +TAL+G +G+GK+T+ +L + P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 923 SGYCEQNDIHSPNVTV-YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
+ + +H+ V E LL+ R + TR +EE+ + + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISG 141
Query: 982 LP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
P G +G LS QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 1033 TVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + RTV+ Q + + E + LK G
Sbjct: 202 SPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 93/251 (37%), Gaps = 36/251 (14%)
Query: 168 HLTILKDVSGIIRPGRMTLLLGPPASXXXXXXXXXXXXXDSSLRVSGRVTYNGHDMDEFV 227
++ +L+ ++ + PG++T L+GP S + G+V +G +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPL---- 83
Query: 228 PQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDV 287
Q+D+H + VG + R A G+ P ++
Sbjct: 84 --------VQYDHHY----------LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 288 FMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ 347
A G D+I G DT VG E +SGGQ++ V ++ +
Sbjct: 126 ITAVAMESGAH-----DFIS---GFPQGYDTEVG-ETGNQLSGGQRQAVALARALIRKPR 176
Query: 348 ALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQI 407
L +D ++ LD+ ++ L +S T L+ Q + + I+ + +G +
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSV 234
Query: 408 VYQGPREHVLE 418
QG ++E
Sbjct: 235 CEQGTHLQLME 245
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 980 VGLPGVSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+G P + LS + +R+ +A EL ++ +DEPT+GL A ++ + VD
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLL-----KRGGQEIYVGS 1072
G TV+ H ++D+++ D + L RGGQ + VG+
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L G++ PG +TAL+G +G+GK+T+ +L + P Q
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQ------ 85
Query: 923 SGYCEQNDIHSPNVTV-YESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
+ + +H+ V E LL+ R + TR +EE+ + + + G
Sbjct: 86 ---YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISG 141
Query: 982 LP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032
P G +G L+ QR+ + +A L+ P ++ +D TS LDA V R +
Sbjct: 142 FPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 1033 TVD-TGRTVVCTIHQPSIDIVEAFDELFLLKRG 1064
+ + RTV+ Q + + E + LK G
Sbjct: 202 SPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 38.1 bits (87), Expect = 0.033, Method: Composition-based stats.
Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 22/251 (8%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQ-ETFAR 921
L+N VS G + A++G +GAGK+TL+ +L G + Q + AR
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 922 ISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVG 981
Q + +V E + R P + +++VM + L Q
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMG---RAPY--GGSQDRQALQQVMAQTDCLALAQRDYR 140
Query: 982 LPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1034
+ LS +++R+ +A L P +F+DEPTS LD +R +R T
Sbjct: 141 V-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR 195
Query: 1035 DTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSLGR--HSSHLIKYFEGIRGVSK 1092
V C +H ++ + A D + LL + G+ + G+ ++ L ++++ GVS+
Sbjct: 196 QEPLAVCCVLHDLNLAALYA-DRIMLLAQ-GKLVACGTPEEVLNAETLTQWYQADLGVSR 253
Query: 1093 IKDGYNPATWM 1103
+ P ++
Sbjct: 254 HPESALPQIYL 264
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-D 892
SI I SVD +++ G E L G+ +F GVLT++ GVSG+GK+TL+ D
Sbjct: 631 ESIEIPAIRRSVDPRRQLTVVGAREHNL---RGIDVSFPLGVLTSVTGVSGSGKSTLVND 687
Query: 893 VLA 895
+LA
Sbjct: 688 ILA 690
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 988 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1044
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1045 HQPSIDIVEAFD 1056
H ++D+++ D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L +S + PG L+G +G+GK+TL+ E + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKA 95
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
G Q + ++S R L+ P +E+ ++ + LR +
Sbjct: 96 FGVIPQ-----------KVFIFSGTFRKNLD---PNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 983 PG------VSG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1033
PG V G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201
Query: 1034 VDTGRTVVC 1042
++C
Sbjct: 202 FADCTVILC 210
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 20/214 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L +SG R G + L+G +GAGK+TL+ AG + A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLRQALVGL 982
Y Q P T W L L TR + +V + L + L ++ L
Sbjct: 76 AYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 983 PGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
G QR RL V + ANP+ ++ +DEP + LD + + + + G
Sbjct: 128 SG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQG 183
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
+V + H + + A L +GG+ + G
Sbjct: 184 LAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 965 EVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1024
E + +V LNP L P LS ++R+ IA+ L+ +P ++ +DEPTS LD A
Sbjct: 135 EKLRMVRLNP-EAVLNSYP--LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQA 191
Query: 1025 IVMR 1028
+++
Sbjct: 192 HIIQ 195
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 20/214 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L +SG R G + L+G +GAGK+TL+ AG + A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLRQALVGL 982
Y Q P T W L L TR + +V + L + L ++ L
Sbjct: 76 AYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 983 PGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
G QR RL V + ANP+ ++ +DEP + LD + + + + G
Sbjct: 128 SG----GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 1038 RTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVG 1071
+V + H + + A L +GG+ + G
Sbjct: 184 LAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASG 215
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.4 bits (80), Expect = 0.25, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 18/188 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L +SG R G + L+G +GAGK+TL+ +AG + A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLRQALVGL 982
Y Q P T W L L TR + +V + L + L ++ L
Sbjct: 76 AYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 983 PGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
G QR RL V + ANP+ ++ +D+P + LD + + + + G
Sbjct: 128 SG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQG 183
Query: 1038 RTVVCTIH 1045
+V + H
Sbjct: 184 LAIVMSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 18/188 (9%)
Query: 864 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARIS 923
L +SG R G + L+G +GAGK+TL+ +AG + A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 924 GYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-NPLRQALVGL 982
Y Q P T W L L TR + +V + L + L ++ L
Sbjct: 76 AYLSQQQT-PPFAT-------PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 983 PGVSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1037
G QR RL V + ANP+ ++ +D+P LD + + + + G
Sbjct: 128 SG----GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQG 183
Query: 1038 RTVVCTIH 1045
+V + H
Sbjct: 184 LAIVMSSH 191
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 950 LPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTE----QRKRLTIAVELVAN 1005
L L VD F +E L+ LR+ +G + +TE + +R+ +A EL +
Sbjct: 690 LALTVDE-AHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRS 748
Query: 1006 P---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK 1062
++ +DEPT+GL + R + VD G TV+ H+ + +V A D + +
Sbjct: 749 GRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIG 806
Query: 1063 RGGQE 1067
G E
Sbjct: 807 PGAGE 811
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 957 PTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016
P + IEE ++ L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 874 PLTRKEIEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
Query: 1017 GLD 1019
LD
Sbjct: 931 YLD 933
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 286 DVFMKAAATEGQEASVVTDYI---LKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMM 342
+V MK A GQ + I +LGLD +V +RG+SGGQK ++
Sbjct: 860 EVDMKEALASGQFRPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 343 VGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI 402
+ +DE + LD + + +L +++ +G +I + A T +L +++ +
Sbjct: 917 WQRPHLIVLDEPTNYLDRDS----LGALSKALKEFEGGVII-ITHSAEFTKNLTEEVWAV 971
Query: 403 SDGQIVYQG 411
DG++ G
Sbjct: 972 KDGRMTPSG 980
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 979 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1019
++ +P +S LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 541 MIAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 980 VGLPGVSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
+G P + LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1037 GRTVVCTIHQPSIDIVEAFDELFLL-KRGGQE 1067
G TV+ H ++D+++ D + L GG+E
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKE 887
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 992 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1049
QR RL + I +DEPT GL R +++T++ D G TV+ H +
Sbjct: 471 QRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.80, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 1011 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL ++
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRK 155
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 957 PTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016
P + IEE + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 874 PLTRKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
Query: 1017 GLD 1019
LD
Sbjct: 931 YLD 933
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 310 LGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNS 369
LGLD +V +RG+SGGQK ++ + +DE + LD + + +
Sbjct: 887 LGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS----LGA 939
Query: 370 LRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQG 411
L +++ +G +I + A T +L +++ + DG+ G
Sbjct: 940 LSKALKEFEGGVII-ITHSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 957 PTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016
P + IEE + L+P +V + GLS Q+ +L +A P +I +DEPT+
Sbjct: 868 PLTRKEIEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 924
Query: 1017 GLD 1019
LD
Sbjct: 925 YLD 927
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 310 LGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNS 369
LGLD +V +RG+SGGQK ++ + +DE + LD + + +
Sbjct: 881 LGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS----LGA 933
Query: 370 LRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQG 411
L +++ +G +I + A T +L +++ + DG+ G
Sbjct: 934 LSKALKEFEGGVII-ITHSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L ++ G L A+ G +GAGKT+L+ ++ G K + RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRI 101
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
S +C QN P T+ E+++ ++ S + +EE ++ + ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYR--SVIKACQLEE--DISKFAEKDNIVLGE 155
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
G++ LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1043 TIHQPSIDIVEAFDELFLLKRGGQEIY 1069
+ ++ ++ D++ +L G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 863 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTXXXXXXXXXXXXXPKKQETFARI 922
+L ++ G L A+ G +GAGKT+L+ ++ G K + RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGRI 101
Query: 923 SGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGL 982
S +C QN P T+ E+++ ++ S + +EE ++ + ++G
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYR--SVIKACQLEE--DISKFAEKDNIVLGE 155
Query: 983 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1042
G++ LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 156 GGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1043 TIHQPSIDIVEAFDELFLLKRGGQEIY 1069
+ ++ ++ D++ +L G Y
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFY 239
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From Escherichia
Coli Identify A Methionine Aminotransferase Function
Length = 386
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 222 DMDEFVPQRTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKP 281
D ++ +R A +++Q N MT GV + E +++ + E+ G +P
Sbjct: 43 DGPRYLQERLAHHVAQGANQYAPMT------------GVQALREAIAQ--KTERLYGYQP 88
Query: 282 DPDIDVFMKAAATEGQEASV 301
D D D+ + A ATE A++
Sbjct: 89 DADSDITVTAGATEALYAAI 108
>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
Length = 765
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 336 VTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDL 395
V T ++VGP L + + + G+D S F++++ L + + I K +I+ L+ A T+
Sbjct: 149 VDTVPVLVGPVSYLLLSKAAKGVDKS--FELLSLLPKILPIYK--EVITELKAAGATWIQ 204
Query: 396 FDDIILISD 404
D+ +L+ D
Sbjct: 205 LDEPVLVXD 213
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 867 VSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRK 898
+ G F PGVLT + G +GKTTL +L+G+K
Sbjct: 13 LGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,611,923
Number of Sequences: 62578
Number of extensions: 1463036
Number of successful extensions: 3301
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3008
Number of HSP's gapped (non-prelim): 267
length of query: 1433
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1322
effective length of database: 8,027,179
effective search space: 10611930638
effective search space used: 10611930638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)