Query 000541
Match_columns 1433
No_of_seqs 523 out of 6098
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 17:08:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000541.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_314-318//hhsearch_pdb/000541hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 666.8 63.5 806 120-1082 413-1304(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 620.1 53.7 804 120-1073 385-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 454.0 33.3 436 170-1075 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 449.3 37.9 427 169-1072 448-981 (986)
5 3ux8_A Excinuclease ABC, A sub 1.0 1 1 445.1 35.1 215 168-417 30-297 (670)
6 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 443.2 33.4 436 170-1075 36-490 (538)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 435.5 31.2 216 835-1087 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 426.7 30.1 201 862-1087 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 362.7 18.5 213 834-1073 414-636 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 333.4 36.5 197 862-1073 598-897 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=666.83 Aligned_cols=806 Identities=20% Similarity=0.268 Sum_probs=406.7
Q ss_pred CEEEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 31599511038998804887778814677899986532105455655553265201798948839999849999689999
Q 000541 120 TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLL 199 (1433)
Q Consensus 120 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL 199 (1433)
..+|+|+|+++.++. .+..++|+|+|+.++||++++|+||+|||||||+
T Consensus 413 ~g~I~~~nvsF~Y~~-------------------------------~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll 461 (1321)
T 4f4c_A 413 KGDITVENVHFTYPS-------------------------------RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII 461 (1321)
T ss_dssp CCCEEEEEEEECCSS-------------------------------STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHH
T ss_pred CCCEEEEEEEEECCC-------------------------------CCCCCEEECEEEEECCCCEEEEEECCCCCHHHHH
T ss_conf 876799985540799-------------------------------9987433331886228827899805898577888
Q ss_pred HHHHCCCCCCCCCCEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 998559899999510999979507887645---22899727888899999999999877710788501233462299885
Q 000541 200 LALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276 (1433)
Q Consensus 200 ~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~ 276 (1433)
++|.|+++|+ +|+|.+||+++++...+ +.++||+|++ ++++.|||||+.|+.
T Consensus 462 ~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~-~Lf~~TI~eNI~~g~--------------------- 516 (1321)
T 4f4c_A 462 SLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEP-ALFNCTIEENISLGK--------------------- 516 (1321)
T ss_dssp HHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCCSEEHHHHHHTTC---------------------
T ss_pred HHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCC-EEECCCHHHHHHHHC---------------------
T ss_conf 8754565164---486157996501125999850466658753-320786167886415---------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 29999997579999964223356689999999919974345534575567786567568999999807984859856988
Q 000541 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEIST 356 (1433)
Q Consensus 277 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEpts 356 (1433)
|+.+.+.+.+|+...+. .|++.+ ||++.||.||+++.+ ||||||||++||||++.+|+|++||||||
T Consensus 517 ----~~~~~~~v~~a~~~a~l-----~~~i~~---lp~G~~T~vGe~G~~-LSGGQkQRiaiARAl~~~~~IliLDE~tS 583 (1321)
T 4f4c_A 517 ----EGITREEMVAACKMANA-----EKFIKT---LPNGYNTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATS 583 (1321)
T ss_dssp ----TTCCHHHHHHHHHHTTC-----HHHHHH---STTTTSSEESSSSCC-CCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred ----CCCHHHHHHHHHHHCCC-----HHHHHC---CCCCCCCEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf ----52209999999987565-----468870---888886075589887-77778799999998725999899845544
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCC-HHH
Q ss_conf 9999999999999999988229849999854911488331839996298299953965799999845998899999-456
Q 000541 357 GLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKG-VAD 435 (1433)
Q Consensus 357 gLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~-~ad 435 (1433)
+||+.++..|.++++++. .++|+++ +. |+.++...+|+|++|++|+|+++|+++|+++ ..+ .++
T Consensus 584 aLD~~te~~i~~~l~~~~--~~~T~ii-ia-Hrls~i~~aD~Iivl~~G~ive~Gth~eL~~-----------~~g~y~~ 648 (1321)
T 4f4c_A 584 ALDAESEGIVQQALDKAA--KGRTTII-IA-HRLSTIRNADLIISCKNGQVVEVGDHRALMA-----------QQGLYYD 648 (1321)
T ss_dssp TSCTTTHHHHHHHHHHHH--TTSEEEE-EC-SCTTTTTTCSEEEEEETTEEEEEECHHHHHT-----------TTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHH--CCCEEEE-EC-CCHHHHHHCCEEEEEECCEEECCCCHHHHHH-----------HHHHHHH
T ss_conf 688789999999999984--7988999-73-6387898689899963996513689999998-----------5327999
Q ss_pred HH--HHHCCCHHHHHH--HHCCCC-----------CCCCCCHHHHHHHHHHCCCCH----HHHHHHCCCCCCC--CCCCC
Q ss_conf 99--740790001332--201588-----------886689879999998420012----2454204863311--00000
Q 000541 436 FL--QEVTSRKDQEQY--WVHKEE-----------PYRFVTVKEFADAFQVFYMGQ----KVGDELRIPFDKR--KSHRA 494 (1433)
Q Consensus 436 fl--~ev~s~~~~~~~--~~~~~~-----------~~~~~~~~ef~~~~~~~~~~~----~~~~~l~~~~~~~--~~~~~ 494 (1433)
.. |......+.... ...+.. .......++.....+.+..+. ...++......+. ...+.
T Consensus 649 l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (1321)
T 4f4c_A 649 LVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQ 728 (1321)
T ss_dssp HHHHHHHHHHHHHHHCC--------------------------------------------------CCCCCCHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
T ss_conf 99962212222332334433223211122222342222222110221110132124567740257775315403899999
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--HHHH----CCCCC-CCCCCCCCHHHHHHHH
Q ss_conf 01-267667878999999999999998418388999999999999999--8876----14478-8876444113567999
Q 000541 495 AL-TTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVA--MTLF----FRTKM-HRDSITDGVIYTGALF 566 (1433)
Q Consensus 495 ~~-~~~~y~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~--gtif----~~~~~-~~~~~~~~~~~~g~lf 566 (1433)
.. .......+.+..+ ...+..+..+++..+...+.+.+. ..++ +.... +.........+.+.+|
T Consensus 729 ~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1321)
T 4f4c_A 729 ELEENNAQKTNLFEIL--------YHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMF 800 (1321)
T ss_dssp TTTTSCCCCCCHHHHH--------HHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHH
T ss_pred HHHHCCCCCEEHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9997078631099999--------99877899999999999999999999999999999875179345566789999999
Q ss_pred HHHHHH--HHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 999999--998856587752033246766217765613689999999964998988877643211017546576899999
Q 000541 567 FIVLMI--MFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQY 644 (1433)
Q Consensus 567 f~i~~~--~~~~~~el~~~~~~~~vf~kqr~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~ 644 (1433)
+.+... .+..............+-.+-|. .+-..+++.|+++++.. ....|+....+
T Consensus 801 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~---------~l~~~il~~~~~ffd~~------------~~~~G~i~~r~ 859 (1321)
T 4f4c_A 801 LVLAAAQGICSFLMTFFMGIASESLTRDLRN---------KLFRNVLSQHIGFFDSP------------QNASGKISTRL 859 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHTSCSSSTTSG------------GGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCCHHHCCC------------CCCHHHHHHCC
T ss_conf 9999999999999999999999999999999---------99888734993332167------------88848888502
Q ss_pred H-------------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC----CCCHHHHHHHHHHHCH
Q ss_conf 9-------------9999999999999999882275578987679999999877232005----5551346899986786
Q 000541 645 L-------------LLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLS----REDIKKWWIWAYWCSP 707 (1433)
Q Consensus 645 l-------------ll~l~~~~~~~lf~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~----~~~ip~~~~W~~~isP 707 (1433)
. +..++......++.++.....+..++..+ +.+++++++..++.. .......-.....
T Consensus 860 s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 934 (1321)
T 4f4c_A 860 ATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLI--IAILPIVAFGQYLRGRRFTGKNVKSASEFADS--- 934 (1321)
T ss_dssp HTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH--HHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 5059999999999999999986537777022137868999999--99888999999999999999999999998889---
Q ss_pred HHHHHHHH---H-HHHHCCCCCCCCCCCCCCCHHHHHHHC-C-CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCC-
Q ss_conf 99999999---9-985139964333888887507888620-5-854455026798999999-99999999999988209-
Q 000541 708 LMYAQNAI---V-VNEFLGNSWRKVLPNTTEPLGVQVLKS-R-GFFTDAYWYWLGLGALAG-FILLFNFGFTLALSFLN- 779 (1433)
Q Consensus 708 ~~y~~~al---~-~nef~~~~~~~~~~~~~~~~G~~~L~~-~-g~~~~~~w~w~~ig~L~g-~~i~f~~~~~laL~~l~- 779 (1433)
..+..+++ . +.-|....... ..-...+.. . .......+.+...+.... ..+...+.+.++.....
T Consensus 935 ~~~~~e~l~gi~tIra~~~e~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~ 1007 (1321)
T 4f4c_A 935 GKIAIEAIENVRTVQALAREDTFY-------ENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIIT 1007 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 889999996279888614148899-------9999999999999999999999999999999999999999875788753
Q ss_pred -CCCCCCC-CC---CCCCCCCC-----------CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECEEE
Q ss_conf -7788653-11---23444554-----------46878875334568875023310123456754467760689951024
Q 000541 780 -PFGKNQA-VI---SQESQSNE-----------HDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAY 843 (1433)
Q Consensus 780 -~~~~~~~-~~---~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~y 843 (1433)
....... .. ........ ........++..... ...+........+..+| ....++|+||++
T Consensus 1008 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l--~~~~~~~~~~~~~~~~~-~~g~I~f~nVsf 1084 (1321)
T 4f4c_A 1008 DPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML--RKISKIDSLSLAGEKKK-LYGKVIFKNVRF 1084 (1321)
T ss_dssp SSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHH--HCCCSSCTTCCCSBCCC-CCCCEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCC-CCCEEEEEEEEE
T ss_conf 765421478999999998778899999999999999999999899986--07665777667787888-888189998798
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCC
Q ss_conf 7615854357765556516402615688388499996569998577996360897797035699996941880---0123
Q 000541 844 SVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFA 920 (1433)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~---~~~~ 920 (1433)
+|+.. +...+|+|+|+.++|||.+||+|+||||||||+++|.|..+ +.+|+|.+||.+.++ ..++
T Consensus 1085 ~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR 1152 (1321)
T 4f4c_A 1085 AYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTR 1152 (1321)
T ss_dssp CCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHH
T ss_pred ECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHH
T ss_conf 57999----------98821245169988989999989999819999999956863--8997899999986549999998
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCHHHH
Q ss_conf 348896158878999888999998777129999993679999999999929964-------2212136998888898889
Q 000541 921 RISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNP-------LRQALVGLPGVSGLSTEQR 993 (1433)
Q Consensus 921 ~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~vg~~~~~glSgGqr 993 (1433)
+..+||+|+..++ +.|++||+.|.. .|.+.+++ .+.++++..++.+ --|+.+|..| .+||||||
T Consensus 1153 ~~i~~V~Qdp~LF-~gTIreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQr 1223 (1321)
T 4f4c_A 1153 SQIAIVSQEPTLF-DCSIAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQK 1223 (1321)
T ss_dssp TTEEEECSSCCCC-SEEHHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHH
T ss_pred HHEEEECCCCEEE-CCCHHHHHHCCC---CCCCCCHH----HHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHH
T ss_conf 5459987899732-723999974549---99999999----999999982984999717678999823889-15699999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999999961997679829999999998999999999987579889999558888999976205588169599998498
Q 000541 994 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 994 kRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~ 1073 (1433)
||+||||+|+++|+||+||||||.||+.++..|++.+++.. .|||+|+++|+.+ ....+|++++|.+ |+++-+|+.
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEECH
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEEC-CEEEEECCH
T ss_conf 99999999971799899968111578999999999999973-9998999606899--9996999999989-899998888
Q ss_pred CCCHHHHHH
Q ss_conf 867037999
Q 000541 1074 GRHSSHLIK 1082 (1433)
Q Consensus 1074 g~~~~~~~~ 1082 (1433)
.++++
T Consensus 1300 ----~eLl~ 1304 (1321)
T 4f4c_A 1300 ----TQLMS 1304 (1321)
T ss_dssp ----HHHHH
T ss_pred ----HHHHH
T ss_conf ----99984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=620.09 Aligned_cols=804 Identities=19% Similarity=0.242 Sum_probs=390.3
Q ss_pred CEEEEEECEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 31599511038998804887778814677899986532105455655553265201798948839999849999689999
Q 000541 120 TIEVRFEHLNVEAEAYVGSRALPTFFNFCANIIEGFLNSVNILPSRKKHLTILKDVSGIIRPGRMTLLLGPPASGKTTLL 199 (1433)
Q Consensus 120 ~~~v~~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL 199 (1433)
..+++|+|+++.+.. ....++|+|+|+.++||+.++|+||||||||||+
T Consensus 385 ~g~i~~~~v~~~y~~-------------------------------~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPS-------------------------------RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp CCCEEEEEEEECCSS-------------------------------TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred CCEEEEEEEEEECCC-------------------------------CCCCCCEECCEEEECCCCEEEEECCCCCCHHHHH
T ss_conf 771899998997699-------------------------------9987101254589759988999899999799999
Q ss_pred HHHHCCCCCCCCCCEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 998559899999510999979507887645---22899727888899999999999877710788501233462299885
Q 000541 200 LALAGKLDSSLRVSGRVTYNGHDMDEFVPQ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKA 276 (1433)
Q Consensus 200 ~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~ 276 (1433)
++|+|.++|+ +|+|.++|+++.+..++ +.++||+|++.+ +..||+||+.|+..
T Consensus 434 ~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~eNi~~g~~-------------------- 489 (1284)
T 3g5u_A 434 QLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVL-FATTIAENIRYGRE-------------------- 489 (1284)
T ss_dssp HHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCC-CSSCHHHHHHHHCS--------------------
T ss_pred HHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCC-CCCCHHHHHHCCCC--------------------
T ss_conf 9980788999---73899999987757999998654898688753-77669999745798--------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 29999997579999964223356689999999919974345534575567786567568999999807984859856988
Q 000541 277 AGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLDVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEIST 356 (1433)
Q Consensus 277 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEpts 356 (1433)
+.+.+...+++...+ ..+.+. .|+++.||.||+++. .||||||||++|||+++.+|++++|||||+
T Consensus 490 -----~~~~~~~~~~~~~~~-----~~~~i~---~l~~g~~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts 555 (1284)
T 3g5u_A 490 -----DVTMDEIEKAVKEAN-----AYDFIM---KLPHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATS 555 (1284)
T ss_dssp -----SCCHHHHHHHHHHTT-----CHHHHH---HSTTGGGCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTC
T ss_pred -----CCCHHHHHHHHHHHC-----CHHHHH---HCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf -----999999999999829-----699997---465633450147878-659999999999999952999899979877
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 99999999999999999882298499998549114883318399962982999539657999998459988999994569
Q 000541 357 GLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADF 436 (1433)
Q Consensus 357 gLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adf 436 (1433)
+||+.++..+.+.++... +++|++.+.|....+ ..+|+|++|++|+++++|+++++.+- .| ...+.
T Consensus 556 ~LD~~~~~~i~~~l~~~~---~~~t~i~itH~l~~i-~~~d~i~vl~~G~i~~~g~~~~l~~~---~~-------~~~~~ 621 (1284)
T 3g5u_A 556 ALDTESEAVVQAALDKAR---EGRTTIVIAHRLSTV-RNADVIAGFDGGVIVEQGNHDELMRE---KG-------IYFKL 621 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHH---TTSEEEEECSCHHHH-TTCSEEEECSSSCCCCEECHHHHHHT---TS-------HHHHH
T ss_pred CCCHHHHHHHHHHHHHHC---CCCEEEEEECCHHHH-HCCCEEEEEECCEEEEECCHHHHHHC---CC-------HHHHH
T ss_conf 779999999999999973---999899994077899-74998999989999997889999867---87-------79999
Q ss_pred HHHHCCCHHHHH-H---HHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 974079000133-2---20158888668987999999842001224542048633--11000000126766787899999
Q 000541 437 LQEVTSRKDQEQ-Y---WVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIPFD--KRKSHRAALTTKIYGVSKKELLK 510 (1433)
Q Consensus 437 l~ev~s~~~~~~-~---~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~y~~s~~~~~~ 510 (1433)
........+... . ...............-...... ..........+.+ ................+.+..++
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1284)
T 3g5u_A 622 VMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIR---RRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILK 698 (1284)
T ss_dssp HHHTC------------------------------------------------------------CCCCCSCCCTTHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 997430022111333333222223443333333320003---45433344564223321102455531366258999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHH---HCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHH
Q ss_conf 99999999984183889999999999-------99999887---614478887644411356799999999999--8856
Q 000541 511 ACMSRELLLMKRNSFVYIFKLCQLTI-------MGLVAMTL---FFRTKMHRDSITDGVIYTGALFFIVLMIMF--NGMA 578 (1433)
Q Consensus 511 ~~~~R~~l~~~r~~~~~~~~~~~~~i-------~ali~gti---f~~~~~~~~~~~~~~~~~g~lff~i~~~~~--~~~~ 578 (1433)
..++.+..+....+..++ ...+.+.+ +.... ..........+...++..+....+ ....
T Consensus 699 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 699 --------LNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp --------HHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------84515799999999999999999999999999999985568-503367799999999999999999999999
Q ss_pred HHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH-------------
Q ss_conf 5877520332467662177656136899999999649989888776432110175465768999999-------------
Q 000541 579 EIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYL------------- 645 (1433)
Q Consensus 579 el~~~~~~~~vf~kqr~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~l------------- 645 (1433)
..........+-.+ ....+-..+.+.|+.+++.. ....++....+.
T Consensus 770 ~~~~~~~~~~~~~~---------lr~~l~~~ll~~~~~ff~~~------------~~~~G~l~~rl~~D~~~i~~~~~~~ 828 (1284)
T 3g5u_A 770 GFTFGKAGEILTKR---------LRYMVFKSMLRQDVSWFDDP------------KNTTGALTTRLANDAAQVKGATGSR 828 (1284)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHCCSHHHHSC------------SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHCCCHHHHCCC------------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999---------99999999983998887578------------9988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999998822755789876799999998772320055551346899986786999999999985139964
Q 000541 646 LLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSW 725 (1433)
Q Consensus 646 ll~l~~~~~~~lf~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~ 725 (1433)
+..+..........++..+..+...+.. .++.++++++.+++..+ +........--.+...+-...|....-.
T Consensus 829 l~~~~~~~~~~~~~~i~~~~~~~~l~lv--~l~~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~l~gi~ 901 (1284)
T 3g5u_A 829 LAVIFQNIANLGTGIIISLIYGWQLTLL--LLAIVPIIAIAGVVEMK-----MLSGQALKDKKELEGSGKIATEAIENFR 901 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSSHHH--HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999996999999--99999999999999999-----9999999999999999999999998899
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCC---CCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHCCC--CCCCCCCCC-----C
Q ss_conf 33388888750788862058544---55026798999999999-----999999999882097--788653112-----3
Q 000541 726 RKVLPNTTEPLGVQVLKSRGFFT---DAYWYWLGLGALAGFIL-----LFNFGFTLALSFLNP--FGKNQAVIS-----Q 790 (1433)
Q Consensus 726 ~~~~~~~~~~~G~~~L~~~g~~~---~~~w~w~~ig~L~g~~i-----~f~~~~~laL~~l~~--~~~~~~~~~-----~ 790 (1433)
.....+.....-..+........ .....|.++ ..++.. .+.+.+.++...... ......... .
T Consensus 902 ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~ 979 (1284)
T 3g5u_A 902 TVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGI--TFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVF 979 (1284)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99984659999999999999999999999999999--9999999999999999999999999098069999999999999
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCC-CH--H--HHHCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 444-55446878875334568875-02--3--310123456754467760689951024761585435776555651640
Q 000541 791 ESQ-SNEHDNRTGGTIQLSTSGRS-KA--E--VKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLL 864 (1433)
Q Consensus 791 ~~~-~~~~~~~~~~~~~~~~~~~~-~~--~--~~~~~~~~~~~~~~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL 864 (1433)
... ................+... .. + +........+...+.....++++|++++++.. +...+|
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l 1049 (1284)
T 3g5u_A 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVL 1049 (1284)
T ss_dssp HHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC----------CCCEEE
T ss_conf 9999999999999999999999999999838876666555665456777857999989977999----------987002
Q ss_pred CCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 2615688388499996569998577996360897797035699996941880---0123348896158878999888999
Q 000541 865 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQ---ETFARISGYCEQNDIHSPNVTVYES 941 (1433)
Q Consensus 865 ~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~ 941 (1433)
+|+|+.++|||.+||+|+||||||||+++|+|..+ +.+|+|.+||.+... ..+++..+||+|+..+ ...||+|+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-~~~ti~eN 1126 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPIL-FDCSIAEN 1126 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCC-CSSBHHHH
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCC-CCCCHHHH
T ss_conf 03059976998899988999978999999946867--8997798999980007899997026898778740-66669999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9987771299999936799999999999299-------642212136998888898889999999999619976798299
Q 000541 942 LLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-------NPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1014 (1433)
Q Consensus 942 L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEP 1014 (1433)
+.+.... ...+.+ .+.+.++..++ .+--|+.+|..| ..||||||||++|||+|+.+|+||+||||
T Consensus 1127 i~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEp 1198 (1284)
T 3g5u_A 1127 IAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEA 1198 (1284)
T ss_dssp HTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESC
T ss_pred HHCCCCC---CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 7466877---899999----999999983959999727042456117888-93389999999999999749999998687
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999998999999999987579889999558888999976205588169599998498
Q 000541 1015 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGSL 1073 (1433)
Q Consensus 1015 TsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~~ 1073 (1433)
|+|||..+...|++.+++. ..|+|+|+++|+++. + ..+|++++|.+ |+++..|+.
T Consensus 1199 Ts~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1199 TSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp SSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEEC-CEEEEECCH
T ss_conf 5557999999999999986-799989999558799-9-80998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=453.96 Aligned_cols=436 Identities=22% Similarity=0.293 Sum_probs=311.0
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 26520179894883999984999968999999855989999951099---------9979507887-----645228997
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRV---------TYNGHDMDEF-----VPQRTAAYI 235 (1433)
Q Consensus 170 ~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V---------~~~G~~~~~~-----~~~~~~~yv 235 (1433)
.+|+|+| .+++|+.++|+||||||||||+++|+|.+.|+ +|++ .++|.+.... ..+..++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 27888899---999999999877710788501233462299885299999975799999642233566899999999199
Q 000541 236 SQHDNHIG---EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL 312 (1433)
Q Consensus 236 ~Q~d~~~~---~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL 312 (1433)
+|.-...+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 74345534575567786567568999999807984859856988999999999999999998822984999985491148
Q 000541 313 DVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPET 392 (1433)
Q Consensus 313 ~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~ 392 (1433)
++..|..++ .|||||||||+||++|+.+|++++|||||++||..++..+.+.|+++.. .+++++.+.|....+
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN--EGKAVLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986--699899996485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83318399962982999539657999998459988999994569974079000133220158888668987999999842
Q 000541 393 YDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVF 472 (1433)
Q Consensus 393 ~~~fD~iivL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 472 (1433)
..++|+|++|.++...| |. . ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~---------------------------~-------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GI---------------------------F-------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EE---------------------------E-------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CE---------------------------E-------------CCC----------------
T ss_conf 86589999977986445-21---------------------------2-------------241----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00122454204863311000000126766787899999999999999841838899999999999999988761447888
Q 000541 473 YMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHR 552 (1433)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~gtif~~~~~~~ 552 (1433)
+. . +.... . +
T Consensus 315 ----------------------------~~--~---------~~~i~------------------~------~------- 324 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGIN------------------E------F------- 324 (607)
T ss_dssp ----------------------------EE--H---------HHHHH------------------H------H-------
T ss_pred ----------------------------HH--H---------HHHHH------------------H------H-------
T ss_conf ----------------------------32--7---------99999------------------9------9-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76444113567999999999998856587752033246766217765613689999999964998988877643211017
Q 000541 553 DSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIG 632 (1433)
Q Consensus 553 ~~~~~~~~~~g~lff~i~~~~~~~~~el~~~~~~~~vf~kqr~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g 632 (1433)
.
T Consensus 325 ---------------------~---------------------------------------------------------- 325 (607)
T 3bk7_A 325 ---------------------L---------------------------------------------------------- 325 (607)
T ss_dssp ---------------------H----------------------------------------------------------
T ss_pred ---------------------H----------------------------------------------------------
T ss_conf ---------------------7----------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 54657689999999999999999999999882275578987679999999877232005555134689998678699999
Q 000541 633 FDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQ 712 (1433)
Q Consensus 633 ~~~~~~rff~~~lll~l~~~~~~~lf~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~ 712 (1433)
.|+... .++
T Consensus 326 -----------------------------------------------------~~~~~~-~~~----------------- 334 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLKD-ENV----------------- 334 (607)
T ss_dssp -----------------------------------------------------HTEETT-TTE-----------------
T ss_pred -----------------------------------------------------HHCCHH-HHH-----------------
T ss_conf -----------------------------------------------------510134-554-----------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999851399643338888875078886205854455026798999999999999999999882097788653112344
Q 000541 713 NAIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQES 792 (1433)
Q Consensus 713 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~w~w~~ig~L~g~~i~f~~~~~laL~~l~~~~~~~~~~~~~~ 792 (1433)
+.. . . ..
T Consensus 335 -----------~~~----~-----------------~------------------------------~~----------- 341 (607)
T 3bk7_A 335 -----------RFR----P-----------------Y------------------------------EI----------- 341 (607)
T ss_dssp -----------ECC----S-----------------S------------------------------CC-----------
T ss_pred -----------HCC----C-----------------C------------------------------CC-----------
T ss_conf -----------301----2-----------------1------------------------------23-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEE
Q ss_conf 45544687887533456887502331012345675446776068995102476158543577655565164026156883
Q 000541 793 QSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFR 872 (1433)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 872 (1433)
. ... . .. . .. +.....++++|+++.++ . ..|+++++.++
T Consensus 342 ------~-------~~~--~---~~--~-~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~v~ 380 (607)
T 3bk7_A 342 ------R-------FTK--L---SE--R-VD------VERETLVEYPRLVKDYG-------------S-FKLEVEPGEIR 380 (607)
T ss_dssp ------C-------CCC--S---TT--S-CC------CCCCEEEEECCEEEECS-------------S-CEEEECCEEEE
T ss_pred ------C-------CCC--C---CC--C-CC------CCCCEEEEEECEEEEEC-------------C-EEEEECCCCCC
T ss_conf ------4-------565--7---77--5-44------46752899913098744-------------3-48993515327
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897797035699996941880012334889615887899988899999877712999
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL 952 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~ 952 (1433)
+||.+||+||||||||||+++|+|... +.+|+|.+ .+.++|++|+....+.+||.|.+.......
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~--- 445 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK--- 445 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCCC---
T ss_conf 998999999999899999999966988--88628999----------027999805766778984999997531258---
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99936799999999999299642212136998888898889999999999619976798299999999989999999999
Q 000541 953 EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032 (1433)
Q Consensus 953 ~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~ 1032 (1433)
....+.++++++.+++.+..+..+ ..|||||||||.||++|+.+|++|+|||||+|||..+...+++.|++
T Consensus 446 ----~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 446 ----LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp ----HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf ----778999999998769933754992-----23799999999999999748998999687447899999999999999
Q ss_pred HH-HCCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECCCCC
Q ss_conf 87-57988999955888899997620558816-959999849886
Q 000541 1033 TV-DTGRTVVCTIHQPSIDIVEAFDELFLLKR-GGQEIYVGSLGR 1075 (1433)
Q Consensus 1033 ~~-~~g~Tvi~tiHqps~~i~~~fd~i~ll~~-gG~~vy~G~~g~ 1075 (1433)
++ +.|.|||+++|+.. .+....|++++|.. .|+.+..|+..+
T Consensus 517 l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 517 LMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 99747989999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=449.27 Aligned_cols=427 Identities=21% Similarity=0.281 Sum_probs=302.4
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 3265201798948839999849999689999998559899999510999979507887645228997278-888999999
Q 000541 169 LTILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRVTYNGHDMDEFVPQRTAAYISQH-DNHIGEMTV 247 (1433)
Q Consensus 169 ~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~-d~~~~~lTV 247 (1433)
+.+|+|+|+.+++|+.++|+||||||||||+++|+| |+| +|.+... ...++|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 999998777107885012334622998852999999757999996422335668999999991997-4345534575567
Q 000541 248 RETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGLD-VCADTMVGDEMLR 326 (1433)
Q Consensus 248 rEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL~-~~~dT~VG~~~~~ 326 (1433)
.|++.+ ...+ . + ..++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~----------~--~---------------------------~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T--K---------------------------EAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS----------C--H---------------------------HHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--HHCC----------H--H---------------------------HHHHHHHHHCCCCHHHHCCCCC-----
T ss_conf 999998--6127----------9--9---------------------------9999999986998446439802-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 78656756899999980798485985698899999999999999999882298499998549114883318399962982
Q 000541 327 GISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILISDGQ 406 (1433)
Q Consensus 327 gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL~~G~ 406 (1433)
.||||||||++||++++.+|++++|||||+|||..+...+.+.|++ .+++++.+.|....+.+.+|+|++|.+|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-----~g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-----CGITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 0799999999999999649999999797667999999999999986-----79989999798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 99-95396579999984599889999945699740790001332201588886689879999998420012245420486
Q 000541 407 IV-YQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVFYMGQKVGDELRIP 485 (1433)
Q Consensus 407 iv-~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~ 485 (1433)
++ +.|+.+++.... | ....
T Consensus 623 iv~~~G~~~e~~~~~-------~----------------~~~~------------------------------------- 642 (986)
T 2iw3_A 623 LRKYKGNFTEFVKKC-------P----------------AAKA------------------------------------- 642 (986)
T ss_dssp EEEEESCHHHHHHHC-------G----------------GGGG-------------------------------------
T ss_pred EECCCCCHHHHHHHH-------H----------------HHHH-------------------------------------
T ss_conf 426779999998614-------8----------------8999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 33110000001267667878999999999999998418388999999999999999887614478887644411356799
Q 000541 486 FDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHRDSITDGVIYTGAL 565 (1433)
Q Consensus 486 ~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~gtif~~~~~~~~~~~~~~~~~g~l 565 (1433)
.+. .. .. ..
T Consensus 643 --------------~~~---------------------------------------------l~--~~---~~------- 651 (986)
T 2iw3_A 643 --------------YEE---------------------------------------------LS--NT---DL------- 651 (986)
T ss_dssp --------------SSS---------------------------------------------TT--TC---CC-------
T ss_pred --------------HHH---------------------------------------------HH--HH---HH-------
T ss_conf --------------986---------------------------------------------44--54---43-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99999999988565877520332467662177656136899999999649989888776432110175465768999999
Q 000541 566 FFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIGFDPNVGRLFRQYL 645 (1433)
Q Consensus 566 ff~i~~~~~~~~~el~~~~~~~~vf~kqr~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rff~~~l 645 (1433)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999998822755789876799999998772320055551346899986786999999999985139964
Q 000541 646 LLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQNAIVVNEFLGNSW 725 (1433)
Q Consensus 646 ll~l~~~~~~~lf~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~~al~~nef~~~~~ 725 (1433)
.+
T Consensus 652 ------------------------------------------------------------------------------~~ 653 (986)
T 2iw3_A 652 ------------------------------------------------------------------------------EF 653 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------HC
T ss_conf ------------------------------------------------------------------------------20
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33388888750788862058544550267989999999999999999998820977886531123444554468788753
Q 000541 726 RKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQESQSNEHDNRTGGTI 805 (1433)
Q Consensus 726 ~~~~~~~~~~~G~~~L~~~g~~~~~~w~w~~ig~L~g~~i~f~~~~~laL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1433)
....+. .
T Consensus 654 ~~p~~~-------------------------------------------------------------------~------ 660 (986)
T 2iw3_A 654 KFPEPG-------------------------------------------------------------------Y------ 660 (986)
T ss_dssp CCCCCC-------------------------------------------------------------------C------
T ss_pred CCCCCC-------------------------------------------------------------------C------
T ss_conf 356555-------------------------------------------------------------------4------
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCC
Q ss_conf 34568875023310123456754467760689951024761585435776555651640261568838849999656999
Q 000541 806 QLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGA 885 (1433)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGa 885 (1433)
. .. .... ....+.++|++++++. ..+.+|+|+|+.+++|+.+||+|+|||
T Consensus 661 -~--------~~----~~~~------~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGS 710 (986)
T 2iw3_A 661 -L--------EG----VKTK------QKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGA 710 (986)
T ss_dssp -C--------TT----CCST------TSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCH
T ss_pred -C--------CC----CCCC------CCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCC
T ss_conf -3--------34----5667------8706999846998189-----------874134322799828978999899998
Q ss_pred CHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHHC------------
Q ss_conf 85779963608977970356999969418800123348896158878----99988899999877712------------
Q 000541 886 GKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIH----SPNVTVYESLLYSAWLR------------ 949 (1433)
Q Consensus 886 GKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~----~~~lTv~E~L~f~a~lr------------ 949 (1433)
|||||+++|+|... +.+|+|.++|. ..++|++|+..+ ....|++|++.+.-...
T Consensus 711 GKSTLLklLaGll~--P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~ 780 (986)
T 2iw3_A 711 GKSTLINVLTGELL--PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQ 780 (986)
T ss_dssp HHHHHHHHHTTSSC--CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCC
T ss_pred CHHHHHHHHHCCCC--CCCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 79999999957988--88608998686--------425763130243321001147999988775045025555433210
Q ss_pred CC-C---------------------------------------------------CC-----------------------
Q ss_conf 99-9---------------------------------------------------99-----------------------
Q 000541 950 LP-L---------------------------------------------------EV----------------------- 954 (1433)
Q Consensus 950 ~~-~---------------------------------------------------~~----------------------- 954 (1433)
.. . ..
T Consensus 781 l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~ 860 (986)
T 2iw3_A 781 INENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAE 860 (986)
T ss_dssp CCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34355544200011232012344445554312220021000255432000001234323443210167776667665544
Q ss_pred -----------CHHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf -----------93679999999999929964-2-2121369988888988899999999996199767982999999999
Q 000541 955 -----------DSPTRKMFIEEVMELVELNP-L-RQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1021 (1433)
Q Consensus 955 -----------~~~~~~~~v~~vl~~l~l~~-~-~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~ 1021 (1433)
..+.....++++++.++|.+ . .+.. ...||||||||+.||++|+.+|++|+|||||+|||..
T Consensus 861 ~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~-----~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~ 935 (986)
T 2iw3_A 861 VDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR-----IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD 935 (986)
T ss_dssp HHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC-----GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCC-----CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 32455543022323479999999997699805444898-----0423999999999999998399999997986577999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 899999999998757988999955888899997620558816959999849
Q 000541 1022 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKRGGQEIYVGS 1072 (1433)
Q Consensus 1022 ~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~gG~~vy~G~ 1072 (1433)
+...+++.+++. +.|||+++|++. .+....|++++|.+ |+++..|+
T Consensus 936 s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 936 SLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 999999999974---997999979899-99985899999989-99998687
No 5
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=445.08 Aligned_cols=215 Identities=23% Similarity=0.311 Sum_probs=154.2
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CCEEEEECCCC
Q ss_conf 53265201798948839999849999689999---------------------998559899999----51099997950
Q 000541 168 HLTILKDVSGIIRPGRMTLLLGPPASGKTTLL---------------------LALAGKLDSSLR----VSGRVTYNGHD 222 (1433)
Q Consensus 168 ~~~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL---------------------~~LaG~l~~~~~----~~G~V~~~G~~ 222 (1433)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 788764522899727888-------------------8999999999998777107885012334622998852999999
Q 000541 223 MDEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDP 283 (1433)
Q Consensus 223 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~ 283 (1433)
.... +++.++||+|... .++.+||+|++.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 75799999642233566899999999199743-45534575567786567568999999807984--8598569889999
Q 000541 284 DIDVFMKAAATEGQEASVVTDYILKILGLDVC-ADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQ--ALFMDEISTGLDS 360 (1433)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~il~~LgL~~~-~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~--vlllDEptsgLDs 360 (1433)
.+... .+.... -.+++.+||++. .|..++ .|||||||||+||++|+.+|+ +++|||||+|||.
T Consensus 172 -~~~~~-------~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHHH-HHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -88889-------999999-9899975984344149700-----189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 999999999999988229849999854911488331839996------298299953965799
Q 000541 361 STTFQIVNSLRQSIHILKGTTLISLLQPAPETYDLFDDIILI------SDGQIVYQGPREHVL 417 (1433)
Q Consensus 361 ~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~~~~fD~iivL------~~G~iv~~G~~~~~~ 417 (1433)
.+...+++.++++.. .+.+++.++|.... ...+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD--LGNTLIVVEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH--TTCEEEEECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCEEEEEECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997--49989999578799-9629989994466656698899740899986
No 6
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=443.23 Aligned_cols=436 Identities=21% Similarity=0.282 Sum_probs=308.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 26520179894883999984999968999999855989999951099---------9979507887-----645228997
Q 000541 170 TILKDVSGIIRPGRMTLLLGPPASGKTTLLLALAGKLDSSLRVSGRV---------TYNGHDMDEF-----VPQRTAAYI 235 (1433)
Q Consensus 170 ~iL~~vs~~i~pG~~t~ilGp~GsGKSTLL~~LaG~l~~~~~~~G~V---------~~~G~~~~~~-----~~~~~~~yv 235 (1433)
.+|+|+| .+++||.++|+||||||||||+++|+|.++|+ +|++ .++|.+.... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 27888899---999999999877710788501233462299885299999975799999642233566899999999199
Q 000541 236 SQHDNHIG---EMTVRETLAFSARCQGVGSRHEMLSELSRREKAAGIKPDPDIDVFMKAAATEGQEASVVTDYILKILGL 312 (1433)
Q Consensus 236 ~Q~d~~~~---~lTVrEtl~f~a~~~g~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~il~~LgL 312 (1433)
.|.....+ ..||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHH
Q ss_conf 74345534575567786567568999999807984859856988999999999999999998822984999985491148
Q 000541 313 DVCADTMVGDEMLRGISGGQKKRVTTGEMMVGPAQALFMDEISTGLDSSTTFQIVNSLRQSIHILKGTTLISLLQPAPET 392 (1433)
Q Consensus 313 ~~~~dT~VG~~~~~gLSGGqrkRvsia~~l~~~~~vlllDEptsgLDs~t~~~i~~~l~~~~~~~~~t~iisi~q~~~~~ 392 (1433)
++..|..++ .|||||||||+||++|+.+|++++|||||++||..++..+.+.|+++.. .+.+++.+.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~--~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE--EGKSVLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996--598799994788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 83318399962982999539657999998459988999994569974079000133220158888668987999999842
Q 000541 393 YDLFDDIILISDGQIVYQGPREHVLEFFKFMGFECPKRKGVADFLQEVTSRKDQEQYWVHKEEPYRFVTVKEFADAFQVF 472 (1433)
Q Consensus 393 ~~~fD~iivL~~G~iv~~G~~~~~~~~F~~~Gf~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~ef~~~~~~~ 472 (1433)
...+|+|++|.+|...|. .+ ..+
T Consensus 222 ~~~~dri~vl~~~~~~~~-------------------------------------~~----~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYG-------------------------------------IF----SQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEE-------------------------------------EE----CCC----------------
T ss_pred HHHCCEEEEECCCCCCCC-------------------------------------CC----CCH----------------
T ss_conf 976889999868632440-------------------------------------22----553----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00122454204863311000000126766787899999999999999841838899999999999999988761447888
Q 000541 473 YMGQKVGDELRIPFDKRKSHRAALTTKIYGVSKKELLKACMSRELLLMKRNSFVYIFKLCQLTIMGLVAMTLFFRTKMHR 552 (1433)
Q Consensus 473 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~gtif~~~~~~~ 552 (1433)
+. . +.. . ....
T Consensus 245 ----------------------------~~--~---------~~~-~-----------------~~~~------------ 255 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNG-I-----------------NEFL------------ 255 (538)
T ss_dssp ----------------------------EE--H---------HHH-H-----------------HHHH------------
T ss_pred ----------------------------HH--H---------HHH-H-----------------HHHH------------
T ss_conf ----------------------------55--8---------999-9-----------------9876------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76444113567999999999998856587752033246766217765613689999999964998988877643211017
Q 000541 553 DSITDGVIYTGALFFIVLMIMFNGMAEIPMTIAKLPIFYKQRDLRFYPSWAYALSTWILKIPISYIEVAVWVFLTYYVIG 632 (1433)
Q Consensus 553 ~~~~~~~~~~g~lff~i~~~~~~~~~el~~~~~~~~vf~kqr~~~~y~~~ay~l~~~i~~iP~~~~~~~i~~~i~Y~~~g 632 (1433)
. +
T Consensus 256 ----------------------~--------------------------------------------------------~ 257 (538)
T 1yqt_A 256 ----------------------R--------------------------------------------------------G 257 (538)
T ss_dssp ----------------------H--------------------------------------------------------T
T ss_pred ----------------------H--------------------------------------------------------H
T ss_conf ----------------------4--------------------------------------------------------0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 54657689999999999999999999999882275578987679999999877232005555134689998678699999
Q 000541 633 FDPNVGRLFRQYLLLLFLNQMASALFRLIAATGRNIVVANTFGSFALLLLFVLGGFVLSREDIKKWWIWAYWCSPLMYAQ 712 (1433)
Q Consensus 633 ~~~~~~rff~~~lll~l~~~~~~~lf~~iaa~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isP~~y~~ 712 (1433)
+...
T Consensus 258 -------------------------------------------------------~~~~--------------------- 261 (538)
T 1yqt_A 258 -------------------------------------------------------YLKD--------------------- 261 (538)
T ss_dssp -------------------------------------------------------EETT---------------------
T ss_pred -------------------------------------------------------CCCH---------------------
T ss_conf -------------------------------------------------------2300---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999851399643338888875078886205854455026798999999999999999999882097788653112344
Q 000541 713 NAIVVNEFLGNSWRKVLPNTTEPLGVQVLKSRGFFTDAYWYWLGLGALAGFILLFNFGFTLALSFLNPFGKNQAVISQES 792 (1433)
Q Consensus 713 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~w~w~~ig~L~g~~i~f~~~~~laL~~l~~~~~~~~~~~~~~ 792 (1433)
.... ... . ..
T Consensus 262 ----------~~~~--~~~-----------------~------------------------------~~----------- 271 (538)
T 1yqt_A 262 ----------ENVR--FRP-----------------Y------------------------------EI----------- 271 (538)
T ss_dssp ----------TTEE--CSS-----------------S------------------------------CC-----------
T ss_pred ----------HHHC--CCC-----------------C------------------------------CC-----------
T ss_conf ----------2320--344-----------------4------------------------------55-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEE
Q ss_conf 45544687887533456887502331012345675446776068995102476158543577655565164026156883
Q 000541 793 QSNEHDNRTGGTIQLSTSGRSKAEVKANHHKKRGMVLPFKPHSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFR 872 (1433)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~ 872 (1433)
. ... . ... .. +.....++++|+++.++ . ..|+++++.++
T Consensus 272 ------~-------~~~--~---~~~---~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~i~ 310 (538)
T 1yqt_A 272 ------K-------FTK--T---GER---VE------IERETLVTYPRLVKDYG-------------S-FRLEVEPGEIK 310 (538)
T ss_dssp ------C-------CCC--S---SGG---GS------SCCCEEEEECCEEEEET-------------T-EEEEECCEEEE
T ss_pred ------C-------CCC--C---CCC---CC------CCCCEEEEEEEEEEEEC-------------C-EEEEECCCCCC
T ss_conf ------5-------455--7---765---56------67871899930799989-------------9-89990744128
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 88499996569998577996360897797035699996941880012334889615887899988899999877712999
Q 000541 873 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPL 952 (1433)
Q Consensus 873 pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~ 952 (1433)
+||++||+|+||||||||+++|+|... +.+|+|.+ ...++|++|+....+..||.|.+........
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-- 376 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-- 376 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCC--
T ss_conf 998999988999999999999967998--99718998----------7469998267767888859999986403688--
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99936799999999999299642212136998888898889999999999619976798299999999989999999999
Q 000541 953 EVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1032 (1433)
Q Consensus 953 ~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~ 1032 (1433)
. ..+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.|++
T Consensus 377 --~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 377 --N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp --T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred --C---HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf --7---8999999999749915653994-----44899999999999999728998999398010899999999999999
Q ss_pred HH-HCCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECCCCC
Q ss_conf 87-57988999955888899997620558816-959999849886
Q 000541 1033 TV-DTGRTVVCTIHQPSIDIVEAFDELFLLKR-GGQEIYVGSLGR 1075 (1433)
Q Consensus 1033 ~~-~~g~Tvi~tiHqps~~i~~~fd~i~ll~~-gG~~vy~G~~g~ 1075 (1433)
++ +.|.|||+++|+.. .+....|++++|.. .|+.+..|+..+
T Consensus 447 l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 99867989999939899-999968999999088315740489899
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=435.46 Aligned_cols=216 Identities=21% Similarity=0.252 Sum_probs=167.1
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 68995102476158543577655565164026156883884999965699985779963608977970356999969418
Q 000541 835 SITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPK 914 (1433)
Q Consensus 835 ~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~ 914 (1433)
.+++++++..++ . ..|+++++.+++||+++|+|+||||||||+++|+|... +.+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC--
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE--
T ss_conf 699823399979-------------8-89982664688998999999999989999999957888--99818999984--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80012334889615887899988899999877712999999367999999999992996422121369988888988899
Q 000541 915 KQETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRK 994 (1433)
Q Consensus 915 ~~~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrk 994 (1433)
..+|++|+....+..||+|++.+..... ... ....++++++.+++.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHC----CCH--HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------5676140003454777999998755311----211--6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECC
Q ss_conf 99999999619976798299999999989999999999875-7988999955888899997620558816-959999849
Q 000541 995 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIVEAFDELFLLKR-GGQEIYVGS 1072 (1433)
Q Consensus 995 Rl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~-~g~Tvi~tiHqps~~i~~~fd~i~ll~~-gG~~vy~G~ 1072 (1433)
||+||++|+.+|++|+|||||+|||..+...+++.|+++++ .|.|||+++|... .+....|++++|.. .|.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 886703799998408
Q 000541 1073 LGRHSSHLIKYFEGI 1087 (1433)
Q Consensus 1073 ~g~~~~~~~~yF~~~ 1087 (1433)
...-......|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=426.70 Aligned_cols=201 Identities=18% Similarity=0.198 Sum_probs=155.8
Q ss_pred EEECCCEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 6402615688388-----49999656999857799636089779703569999694188001233488961588789998
Q 000541 862 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYPKKQETFARISGYCEQNDIHSPNV 936 (1433)
Q Consensus 862 ~iL~~vs~~i~pG-----~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~~~~~~~~~~~~yv~Q~d~~~~~l 936 (1433)
..++++|+.+.+| |+++|+|+||||||||+++|+|... +.+|+. .. ....+|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 4468658997068514651899988889869999999965787--878858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 88999998777129999993679999999999929964221213699888889888999999999961997679829999
Q 000541 937 TVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1016 (1433)
Q Consensus 937 Tv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTs 1016 (1433)
||+|.+... ++. ... ....++++++.+++.+..+..+ ..|||||||||.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCCEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999998999999999987-57988999955888899997620558816-959999849886703799998408
Q 000541 1017 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIVEAFDELFLLKR-GGQEIYVGSLGRHSSHLIKYFEGI 1087 (1433)
Q Consensus 1017 GLD~~~a~~i~~~l~~~~-~~g~Tvi~tiHqps~~i~~~fd~i~ll~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1087 (1433)
|||..+...+++.++++. +.|.|||+++|... .+....|++++|.. .|+.+..|++.+--.....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=362.67 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=177.6
Q ss_pred EEEEEECEEEEEECCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 06899510247615854357765556516402615688388499996569998577996360897797035699996941
Q 000541 834 HSITFDEIAYSVDMPQEMMRPGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYISGSIMISGYP 913 (1433)
Q Consensus 834 ~~l~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl~~L~gr~~~~~~~G~i~i~G~~ 913 (1433)
..++|+|++++++.. +...+|+|+|+.++||+++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 414 g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~ 481 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVD 481 (1321)
T ss_dssp CCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCCC
T ss_conf 767999855407999----------98743333188622882789980589857788887545651--644861579965
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCC
Q ss_conf 880---01233488961588789998889999987771299999936799999999999299-------64221213699
Q 000541 914 KKQ---ETFARISGYCEQNDIHSPNVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVEL-------NPLRQALVGLP 983 (1433)
Q Consensus 914 ~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~~vg~~ 983 (1433)
.++ ..+++.++||+|+..+ .+.|++||+.|.. | +.+. +.+.++++..++ .+--++.+|..
T Consensus 482 i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~----~-~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 482 VRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGK----E-GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDR 551 (1321)
T ss_dssp TTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTC----T-TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSS
T ss_pred CHHCCHHHHHHCCCCCCCCCEE-ECCCHHHHHHHHC----C-CCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECCC
T ss_conf 0112599985046665875332-0786167886415----5-2209----999999987565468870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 88888988899999999996199767982999999999899999999998757988999955888899997620558816
Q 000541 984 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLKR 1063 (1433)
Q Consensus 984 ~~~glSgGqrkRl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~~ 1063 (1433)
| ..||||||||++|||+++++|+|++||||||+||+.+...|++.++++. .|+|+|+++|+++ .....|++++|.+
T Consensus 552 G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 552 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKN 627 (1321)
T ss_dssp S-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEET
T ss_pred C-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEEC
T ss_conf 8-8777778799999998725999899845544688789999999999984-7988999736387--8986898999639
Q ss_pred CCEEEEECCC
Q ss_conf 9599998498
Q 000541 1064 GGQEIYVGSL 1073 (1433)
Q Consensus 1064 gG~~vy~G~~ 1073 (1433)
|+++..|+.
T Consensus 628 -G~ive~Gth 636 (1321)
T 4f4c_A 628 -GQVVEVGDH 636 (1321)
T ss_dssp -TEEEEEECH
T ss_pred -CEEECCCCH
T ss_conf -965136899
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=333.38 Aligned_cols=197 Identities=27% Similarity=0.420 Sum_probs=144.4
Q ss_pred EEECCCEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCCC-CC---EEE------EEEEECCCCCCCCC----
Q ss_conf 640261568838849999656999857799---------63608977-97---035------69999694188001----
Q 000541 862 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT-GG---YIS------GSIMISGYPKKQET---- 918 (1433)
Q Consensus 862 ~iL~~vs~~i~pG~~~ai~G~sGaGKTTLl---------~~L~gr~~-~~---~~~------G~i~i~G~~~~~~~---- 918 (1433)
..|+|||+.+++|++++|+|+||||||||+ +.+.+... .+ .+. +.+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred --C--------------------------------------CCEEEEECCCCCCCC------------------------
Q ss_conf --2--------------------------------------334889615887899------------------------
Q 000541 919 --F--------------------------------------ARISGYCEQNDIHSP------------------------ 934 (1433)
Q Consensus 919 --~--------------------------------------~~~~~yv~Q~d~~~~------------------------ 934 (1433)
+ ..-.||+.++....|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------988899999877712999999367999999999992996422121369988888988899999999996199
Q 000541 935 --------NVTVYESLLYSAWLRLPLEVDSPTRKMFIEEVMELVELNPLRQALVGLPGVSGLSTEQRKRLTIAVELVANP 1006 (1433)
Q Consensus 935 --------~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~vg~~~~~glSgGqrkRl~ia~~L~~~p 1006 (1433)
.+||.|++.|.... .....+.++++.+||.... .|.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEE-----CCCEEEEECCC
Q ss_conf ---76798299999999989999999999875798899995588889999762055881-----69599998498
Q 000541 1007 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIVEAFDELFLLK-----RGGQEIYVGSL 1073 (1433)
Q Consensus 1007 ---~il~lDEPTsGLD~~~a~~i~~~l~~~~~~g~Tvi~tiHqps~~i~~~fd~i~ll~-----~gG~~vy~G~~ 1073 (1433)
+|++|||||+|||..+...+++.|+++++.|.|||++.|.. +.....|++++|. +||+++..|+.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 88978999798889999999999999999996699899993799--99972999999668777789789997699
Done!