BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000545
(1432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
Length = 1143
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 826 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 879
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 880 NGKLLASINSTVRLYEWTTEKDVRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 934
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 935 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 991
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 992 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1041
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1042 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1086
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 172/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 127 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 171
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 172 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 215
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 216 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 264
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 265 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 318
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 319 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 377
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 378 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 404
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E + L++S +T VL
Sbjct: 405 --------IDLPGIKGLWPLRSDPNR--------------ETYDTLVLSFVGQTRVLMLN 442
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 443 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 482
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 842 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 895
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 896 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 950
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 951 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 1007
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 1008 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1057
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1058 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1102
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 96/461 (20%), Positives = 172/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 143 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 187
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 188 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 231
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVPSP GG +++G +I YH+ A+A + + S V
Sbjct: 232 EAEASMVIAVPSPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 280
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 281 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 334
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 335 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 393
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 394 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 420
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 421 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 458
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 459 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 498
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 842 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 895
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 896 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 950
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 951 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 1007
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 1008 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1057
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1058 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1102
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 143 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 187
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 188 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 231
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 232 EAEASMVIAVPKPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 280
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 281 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 334
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 335 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 393
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 394 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 420
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 421 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 458
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 459 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 498
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 842 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 895
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 896 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 950
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 951 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 1007
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 1008 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1057
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1058 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1102
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 143 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 187
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 188 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 231
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 232 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 280
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 281 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 334
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 335 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 393
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 394 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 420
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 421 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 458
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 459 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 498
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 841 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 894
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 895 NGKLLASINSTVRLYEWTTEKDVRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 949
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 950 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 1006
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 1007 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1056
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1057 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1101
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 172/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 142 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 186
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 187 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 230
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 231 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 279
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 280 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 333
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 334 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 392
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 393 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 419
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E + L++S +T VL
Sbjct: 420 --------IDLPGIKGLWPLRSDPNR--------------ETYDTLVLSFVGQTRVLMLN 457
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 458 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 497
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 827 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 880
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 881 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 935
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 936 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 992
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 993 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1042
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1043 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1087
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 128 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 172
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 173 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 216
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 217 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 265
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 266 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 319
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 320 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 378
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 379 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 405
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 406 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 443
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 444 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 483
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 842 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 895
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 896 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 950
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 951 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 1007
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 1008 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1057
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1058 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1102
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 172/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 143 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 187
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + + P W N+
Sbjct: 188 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYAVSLREKEFNKGP--WKQENV 231
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 232 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 280
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 281 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 334
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 335 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 393
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 394 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 420
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 421 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 458
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 459 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 498
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 823 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 876
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 931
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 932 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 988
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 989 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1038
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1039 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1083
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 124 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 168
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 169 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 212
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 213 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 261
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 262 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 315
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 316 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 374
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 375 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 401
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 402 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 439
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 440 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 479
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 1150
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 833 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 886
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 887 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 941
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 942 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 998
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 999 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1048
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1049 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1093
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 134 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 178
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 179 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 222
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 223 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 271
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 272 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 325
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 326 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 384
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 385 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 411
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 412 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 449
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 450 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 489
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct
Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 841 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 894
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 895 NGKLLASINSTVRLYEWTTEKELRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 949
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 950 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 1006
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 1007 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1056
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1057 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1101
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 171/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 142 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 186
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 187 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 230
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 231 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 279
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 280 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 333
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 334 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 392
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 393 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 419
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E L++S +T VL
Sbjct: 420 --------IDLPGIKGLWPLRSDPNR--------------ETDDTLVLSFVGQTRVLMLN 457
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 458 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 497
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 34/285 (11%)
Query: 1106 KENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL 1164
K+ T +GTA V E+ + GR+++F + +D V E KE+KGA+ ++
Sbjct: 823 KDPNTYFIVGTAMVYPEEAEPKQGRIVVF---QYSDGKLQTVAE---KEVKGAVYSMVEF 876
Query: 1165 QGHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1219
G LL + + L++WT TE N + + LY L +FIL+GD+ +S+
Sbjct: 877 NGKLLASINSTVRLYEWTTEKDVRTECN--HYNNIMALY---LKTKGDFILVGDLMRSVL 931
Query: 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWK 1279
L++K +A+DF A E L D + L ++ N+ + + +
Sbjct: 932 LLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLG---AENAFNLFVCQKDSAATTDEE 988
Query: 1280 GQKLLSRAEFHVGAHVTKF----LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIG 1335
Q L FH+G V F L +Q L +S T + +LFGT++G IG
Sbjct: 989 RQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGS----------VLFGTVNGMIG 1038
Query: 1336 CIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAH 1380
+ L E + L +Q +L + V + +R FH+ K
Sbjct: 1039 LVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTE 1083
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/461 (20%), Positives = 172/461 (37%), Gaps = 116/461 (25%)
Query: 185 VDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMK 244
+DP+ R G+ +Y ++ + L F+ R+E HVI+++
Sbjct: 124 IDPECRMIGLRLYDGLFKVIPLDRDNKEL----------KAFNIRLEELHVIDVK----- 168
Query: 245 HVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNL 304
F++G P + +++ GR H + P W N+
Sbjct: 169 ------FLYGCQAPTICFVYQDP---QGR-----HVKTYEVSLREKEFNKGP--WKQENV 212
Query: 305 PHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSV-- 362
+A ++AVP P GG +++G +I YH+ A+A + + S V
Sbjct: 213 EAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIA-----------PPIIKQSTIVCH 261
Query: 363 -ELDAAHATWLQNDVALLSTKTGDLVLLTV----VYDGRV-VQRLDLSKTNPSVLTSDIT 416
+D + +L D+ G L +L + DG V ++ L + + + +T
Sbjct: 262 NRVDPNGSRYLLGDME------GRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLT 315
Query: 417 TIGNSLFFLGSRLGDSLLVQFTCGS---GTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473
+ N + F+GSRLGDS LV+ S G+ +++ G I D R+
Sbjct: 316 YLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPI-VDMCVVDLERQGQGQ 374
Query: 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGI 533
+ T S A ++ G L+ G+ I+ AS
Sbjct: 375 LV------------------------TCSGAFKE-----GSLRIIRNGIGIHEHAS---- 401
Query: 534 SKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETA 593
++LPG KG+W + +R E + L++S +T VL
Sbjct: 402 --------IDLPGIKGLWPLRSDPNR--------------ETYDTLVLSFVGQTRVLMLN 439
Query: 594 DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARIL 634
E TE + + +T GN+ +++IQ+ R++
Sbjct: 440 GEEVEETELMGFVDDQQTFFCGNV-AHQQLIQITSASVRLV 479
>pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
pdb|3NRA|B Chain B, Crystal Structure Of An Aspartate Aminotransferase
(Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15
A Resolution
Length = 407
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 1122 EDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIA 1171
E A RV LFS NP N VYS E G I+ALA+ G +IA
Sbjct: 174 EAFKAGARVFLFS------NPNNPAGVVYSAEEIGQIAALAARYGATVIA 217
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 1035 LLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAG-GPWQTRATIPMQSSENAL 1093
++ID + G+ + N+++ VD V+ + R + G P A I +Q+ +N
Sbjct: 91 VIIDADKGYVVTNNHV--VDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLT 148
Query: 1094 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE 1153
+++ + + + +AIG + GE V + L +G NA+N +N + +
Sbjct: 149 AIKMAD--SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 1154 LKGAISALASLQGHLL 1169
A AL +L G L+
Sbjct: 207 RGNAGGALVNLNGELI 222
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 1035 LLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAG-GPWQTRATIPMQSSENAL 1093
++ID + G+ + N+++ VD V+ + R + G P A I +Q+ +N
Sbjct: 91 VIIDADKGYVVTNNHV--VDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLT 148
Query: 1094 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE 1153
+++ + + + +AIG + GE V + L +G NA+N +N + +
Sbjct: 149 AIKMAD--SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 1154 LKGAISALASLQGHLL 1169
A AL +L G L+
Sbjct: 207 RGNAGGALVNLNGELI 222
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 1035 LLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAG-GPWQTRATIPMQSSENAL 1093
++ID + G+ + N+++ VD V+ + R + G P A I +Q+ +N
Sbjct: 91 VIIDADKGYVVTNNHV--VDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLT 148
Query: 1094 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE 1153
+++ + + + +AIG + GE V + L +G NA+N +N + +
Sbjct: 149 AIKMAD--SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 1154 LKGAISALASLQGHLL 1169
A AL +L G L+
Sbjct: 207 RGNAGGALVNLNGELI 222
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 1035 LLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAG-GPWQTRATIPMQSSENAL 1093
++ID + G+ + N+++ VD V+ + R + G P A I +Q+ +N
Sbjct: 91 VIIDADKGYVVTNNHV--VDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKNLT 148
Query: 1094 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE 1153
++ + + + +AIG + GE V + L +G NA+N +N + +
Sbjct: 149 AIKXAD--SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 1154 LKGAISALASLQGHLL 1169
A AL +L G L+
Sbjct: 207 RGNAGGALVNLNGELI 222
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 1035 LLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAG-GPWQTRATIPMQSSENAL 1093
++ID + G+ + N+++ VD V+ + R + G P A I +Q+ +N
Sbjct: 91 VIIDADKGYVVTNNHV--VDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKNLT 148
Query: 1094 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE 1153
++ + + + +AIG + GE V + L +G NA+N +N + +
Sbjct: 149 AIKXAD--SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 1154 LKGAISALASLQGHLL 1169
A AL +L G L+
Sbjct: 207 RGNAGGALVNLNGELI 222
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 1035 LLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAG-GPWQTRATIPMQSSENAL 1093
++ID + G+ + N+++ VD V+ + R + G P A I +Q+ +N
Sbjct: 91 VIIDADKGYVVTNNHV--VDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLT 148
Query: 1094 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE 1153
+++ + + + +AIG + GE V + L +G NA+N +N + +
Sbjct: 149 AIKMAD--SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 1154 LKGAISALASLQGHLL 1169
+ AL +L G L+
Sbjct: 207 RGNSGGALVNLNGELI 222
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 30.4 bits (67), Expect = 7.2, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 1035 LLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAG-GPWQTRATIPMQSSENAL 1093
++ID + G+ + N+++ VD V+ + R + G P A I +Q+ +N
Sbjct: 91 VIIDADKGYVVTNNHV--VDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLT 148
Query: 1094 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE 1153
+++ + + + +AIG + GE V + L +G NA+N +N + +
Sbjct: 149 AIKMAD--SDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 206
Query: 1154 LKGAISALASLQGHLL 1169
+ AL +L G L+
Sbjct: 207 RGNSGGALVNLNGELI 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,698,869
Number of Sequences: 62578
Number of extensions: 1658839
Number of successful extensions: 3589
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3513
Number of HSP's gapped (non-prelim): 66
length of query: 1432
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1321
effective length of database: 8,027,179
effective search space: 10603903459
effective search space used: 10603903459
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)