Query 000545
Match_columns 1432
No_of_seqs 219 out of 710
Neff 8.1
Searched_HMMs 46136
Date Mon Apr 1 18:47:00 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1896 mRNA cleavage and poly 100.0 1E-195 3E-200 1750.7 114.9 1286 2-1432 1-1366(1366)
2 KOG1897 Damage-specific DNA bi 100.0 1E-159 3E-164 1418.4 107.8 1067 2-1428 1-1095(1096)
3 KOG1898 Splicing factor 3b, su 100.0 6E-149 1E-153 1330.9 82.6 1130 3-1429 2-1204(1205)
4 COG5161 SFT1 Pre-mRNA cleavage 100.0 6E-119 1E-123 1043.5 77.7 1225 1-1426 1-1313(1319)
5 PF10433 MMS1_N: Mono-function 100.0 7.2E-55 1.6E-59 544.3 42.9 452 131-712 1-501 (504)
6 PF03178 CPSF_A: CPSF A subuni 100.0 6.9E-52 1.5E-56 488.8 37.3 317 1063-1398 1-321 (321)
7 KOG0318 WD40 repeat stress pro 98.4 0.0054 1.2E-07 72.3 41.8 141 1108-1270 454-601 (603)
8 KOG2048 WD40 repeat protein [G 97.8 0.16 3.4E-06 62.3 38.4 164 1081-1271 374-548 (691)
9 PRK11028 6-phosphogluconolacto 97.2 0.58 1.3E-05 55.6 33.3 163 1126-1300 146-327 (330)
10 KOG1539 WD repeat protein [Gen 96.8 2.6 5.6E-05 53.4 39.8 162 1081-1271 434-606 (910)
11 cd00200 WD40 WD40 domain, foun 96.4 2.2 4.7E-05 47.9 31.9 137 1109-1268 147-288 (289)
12 PF03178 CPSF_A: CPSF A subuni 96.4 0.41 8.8E-06 56.8 22.8 155 1155-1340 23-202 (321)
13 KOG1273 WD40 repeat protein [G 96.2 0.19 4.1E-06 56.3 16.8 155 1108-1293 34-195 (405)
14 PRK11028 6-phosphogluconolacto 96.1 4.4 9.6E-05 48.1 32.2 255 969-1298 3-279 (330)
15 KOG1446 Histone H3 (Lys4) meth 96.1 3.6 7.7E-05 46.7 28.8 152 966-1186 150-307 (311)
16 cd00200 WD40 WD40 domain, foun 95.9 3.9 8.5E-05 45.7 32.2 140 1109-1271 105-249 (289)
17 KOG1274 WD40 repeat protein [G 95.9 1.4 3E-05 56.3 24.1 122 951-1137 138-263 (933)
18 KOG1036 Mitotic spindle checkp 95.8 4.7 0.0001 45.7 24.9 147 968-1172 147-293 (323)
19 PLN00181 protein SPA1-RELATED; 95.7 2.2 4.7E-05 57.4 27.6 145 1109-1270 630-792 (793)
20 PF10282 Lactonase: Lactonase, 95.5 7.8 0.00017 46.4 33.1 160 1127-1297 165-342 (345)
21 KOG1539 WD repeat protein [Gen 94.9 1.2 2.5E-05 56.3 18.7 126 1129-1271 57-190 (910)
22 PF08596 Lgl_C: Lethal giant l 94.9 6 0.00013 48.1 24.9 75 753-857 99-174 (395)
23 KOG0291 WD40-repeat-containing 94.5 19 0.00042 45.5 36.8 303 921-1269 25-378 (893)
24 KOG0306 WD40-repeat-containing 94.3 21 0.00045 45.2 44.0 208 1090-1358 413-637 (888)
25 KOG0285 Pleiotropic regulator 94.0 4.8 0.0001 46.3 19.2 60 751-855 163-222 (460)
26 KOG1036 Mitotic spindle checkp 94.0 14 0.0003 42.0 23.2 201 1109-1353 65-275 (323)
27 KOG0646 WD40 repeat protein [G 93.8 3.3 7.1E-05 49.2 18.3 149 1109-1269 135-305 (476)
28 KOG0315 G-protein beta subunit 93.2 16 0.00035 40.4 21.4 144 1107-1269 134-286 (311)
29 KOG0282 mRNA splicing factor [ 92.8 0.67 1.5E-05 54.9 10.7 213 1064-1336 280-501 (503)
30 KOG0291 WD40-repeat-containing 92.8 34 0.00073 43.5 25.2 135 1126-1271 75-219 (893)
31 KOG0283 WD40 repeat-containing 92.6 1.7 3.6E-05 55.1 14.4 118 1079-1224 443-576 (712)
32 KOG2111 Uncharacterized conser 92.5 18 0.00038 41.5 20.6 135 1127-1272 112-257 (346)
33 PLN00181 protein SPA1-RELATED; 92.5 52 0.0011 44.3 33.7 140 1109-1270 588-737 (793)
34 KOG0319 WD40-repeat-containing 92.1 43 0.00094 42.5 35.1 169 941-1183 225-396 (775)
35 KOG0283 WD40 repeat-containing 91.8 4.3 9.4E-05 51.5 16.6 162 1086-1275 406-580 (712)
36 COG2706 3-carboxymuconate cycl 91.8 31 0.00068 40.2 31.3 71 1109-1191 255-332 (346)
37 PTZ00420 coronin; Provisional 91.1 55 0.0012 41.9 29.4 154 1127-1298 147-312 (568)
38 KOG2321 WD40 repeat protein [G 90.8 3.8 8.1E-05 49.9 14.0 103 1165-1272 146-259 (703)
39 KOG1897 Damage-specific DNA bi 90.6 70 0.0015 42.2 30.8 140 1146-1298 760-919 (1096)
40 KOG1273 WD40 repeat protein [G 90.1 10 0.00023 43.0 15.7 18 838-855 35-52 (405)
41 PF08596 Lgl_C: Lethal giant l 89.9 4.1 8.8E-05 49.6 14.0 102 1089-1202 135-261 (395)
42 KOG0650 WD40 repeat nucleolar 89.8 4.9 0.00011 49.2 13.9 250 973-1269 419-678 (733)
43 KOG2096 WD40 repeat protein [G 89.7 33 0.00072 39.2 19.2 98 1170-1271 205-308 (420)
44 KOG0306 WD40-repeat-containing 89.7 71 0.0015 40.8 30.8 32 1154-1185 633-667 (888)
45 KOG0319 WD40-repeat-containing 89.6 71 0.0015 40.7 32.5 178 1062-1272 258-443 (775)
46 TIGR03866 PQQ_ABC_repeats PQQ- 89.4 44 0.00096 38.2 28.9 100 1165-1270 167-278 (300)
47 KOG3881 Uncharacterized conser 89.0 4.7 0.0001 47.1 12.5 133 1154-1299 104-253 (412)
48 KOG2106 Uncharacterized conser 88.8 65 0.0014 39.2 45.1 157 1089-1269 447-624 (626)
49 KOG2110 Uncharacterized conser 88.5 58 0.0013 38.2 23.7 168 1065-1271 69-248 (391)
50 KOG0278 Serine/threonine kinas 88.2 7.9 0.00017 42.6 12.8 134 1127-1275 164-301 (334)
51 KOG0294 WD40 repeat-containing 88.2 55 0.0012 37.6 21.3 197 1065-1300 108-305 (362)
52 KOG2055 WD40 repeat protein [G 88.1 37 0.00079 40.8 19.0 136 837-1022 224-364 (514)
53 PF14727 PHTB1_N: PTHB1 N-term 87.3 81 0.0018 38.7 23.9 189 1093-1302 23-248 (418)
54 KOG0290 Conserved WD40 repeat- 87.1 10 0.00022 42.7 13.1 152 1107-1271 57-227 (364)
55 KOG4378 Nuclear protein COP1 [ 87.0 3.5 7.6E-05 49.1 10.1 116 1126-1248 185-302 (673)
56 PF14783 BBS2_Mid: Ciliary BBS 86.9 23 0.0005 34.7 14.0 92 623-765 19-110 (111)
57 KOG0296 Angio-associated migra 86.8 10 0.00023 43.9 13.4 127 1129-1269 87-218 (399)
58 KOG0647 mRNA export protein (c 86.6 26 0.00057 39.9 16.0 136 1126-1275 92-232 (347)
59 COG2706 3-carboxymuconate cycl 85.5 83 0.0018 36.9 25.0 157 1128-1297 167-341 (346)
60 KOG0646 WD40 repeat protein [G 85.1 16 0.00034 43.8 14.1 86 1110-1212 51-141 (476)
61 KOG0772 Uncharacterized conser 84.8 8.2 0.00018 46.5 11.7 178 1127-1340 290-487 (641)
62 KOG2106 Uncharacterized conser 83.9 77 0.0017 38.6 19.0 121 1161-1298 376-497 (626)
63 KOG0266 WD40 repeat-containing 83.2 61 0.0013 40.5 19.6 179 1126-1341 223-410 (456)
64 KOG0318 WD40 repeat stress pro 83.1 42 0.00091 40.9 16.6 146 576-773 375-521 (603)
65 KOG2055 WD40 repeat protein [G 83.0 1.2E+02 0.0026 36.8 22.9 32 657-688 212-245 (514)
66 KOG1408 WD40 repeat protein [F 82.8 1.5E+02 0.0032 37.8 22.4 201 1108-1338 470-711 (1080)
67 KOG0315 G-protein beta subunit 82.6 30 0.00065 38.4 13.9 156 1108-1290 51-212 (311)
68 KOG2110 Uncharacterized conser 82.4 93 0.002 36.6 18.4 144 1149-1305 81-228 (391)
69 KOG0299 U3 snoRNP-associated p 82.4 9.1 0.0002 45.6 10.7 137 1108-1271 213-356 (479)
70 KOG1034 Transcriptional repres 81.4 26 0.00055 40.4 13.3 143 1108-1271 104-278 (385)
71 KOG0277 Peroxisomal targeting 81.4 32 0.0007 38.3 13.7 68 1109-1183 21-92 (311)
72 PF08450 SGL: SMP-30/Gluconola 81.1 59 0.0013 36.6 17.1 113 1153-1271 38-164 (246)
73 PTZ00420 coronin; Provisional 80.9 98 0.0021 39.6 20.2 152 974-1192 146-303 (568)
74 PF14727 PHTB1_N: PTHB1 N-term 80.5 1.5E+02 0.0033 36.4 29.4 74 57-148 90-163 (418)
75 PTZ00421 coronin; Provisional 80.5 1E+02 0.0023 38.8 20.2 146 1110-1270 89-244 (493)
76 PHA02713 hypothetical protein; 80.4 31 0.00068 44.2 15.9 97 1175-1274 368-489 (557)
77 KOG1274 WD40 repeat protein [G 79.6 32 0.00069 44.7 14.8 134 1126-1271 33-168 (933)
78 PF00780 CNH: CNH domain; Int 79.6 51 0.0011 37.8 16.2 141 1108-1271 6-165 (275)
79 KOG0279 G protein beta subunit 79.4 1E+02 0.0022 35.0 16.9 114 1150-1270 62-179 (315)
80 KOG4441 Proteins containing BT 79.2 30 0.00065 44.4 15.1 170 1064-1261 349-532 (571)
81 PHA03098 kelch-like protein; P 79.1 32 0.0007 43.9 15.6 98 1161-1261 385-497 (534)
82 PF10282 Lactonase: Lactonase, 79.1 1.5E+02 0.0032 35.5 39.3 150 1078-1247 180-345 (345)
83 KOG1587 Cytoplasmic dynein int 78.7 15 0.00032 46.5 11.8 149 1109-1272 360-517 (555)
84 KOG0266 WD40 repeat-containing 78.6 1.1E+02 0.0023 38.4 19.6 135 1126-1271 179-318 (456)
85 KOG2445 Nuclear pore complex c 77.0 26 0.00057 39.9 11.7 71 1106-1184 181-258 (361)
86 KOG0649 WD40 repeat protein [G 76.9 58 0.0013 36.1 13.8 145 1108-1270 21-185 (325)
87 KOG0310 Conserved WD40 repeat- 76.2 1.9E+02 0.0042 35.2 21.3 129 1126-1269 174-307 (487)
88 KOG2445 Nuclear pore complex c 76.1 53 0.0011 37.6 13.7 103 1066-1183 201-319 (361)
89 KOG0278 Serine/threonine kinas 75.8 67 0.0014 35.7 13.9 92 1064-1184 205-299 (334)
90 KOG2114 Vacuolar assembly/sort 75.4 2.7E+02 0.0059 36.5 21.7 24 660-683 27-50 (933)
91 KOG0771 Prolactin regulatory e 75.0 30 0.00066 41.0 12.0 72 1198-1271 283-356 (398)
92 KOG0282 mRNA splicing factor [ 74.8 59 0.0013 39.4 14.3 132 1127-1268 363-502 (503)
93 KOG0273 Beta-transducin family 74.7 51 0.0011 39.8 13.7 125 1126-1269 337-480 (524)
94 KOG0294 WD40 repeat-containing 74.4 24 0.00052 40.4 10.5 81 658-777 43-123 (362)
95 KOG0296 Angio-associated migra 74.4 1.4E+02 0.003 35.2 16.7 113 1152-1272 61-179 (399)
96 KOG0276 Vesicle coat complex C 74.3 2.5E+02 0.0053 35.5 33.5 62 1160-1225 429-491 (794)
97 PF14783 BBS2_Mid: Ciliary BBS 74.0 79 0.0017 31.1 12.7 70 1092-1184 2-73 (111)
98 KOG1517 Guanine nucleotide bin 73.4 2.5E+02 0.0055 37.7 20.2 188 1088-1300 1108-1312(1387)
99 KOG0299 U3 snoRNP-associated p 71.4 80 0.0017 38.1 14.3 153 1127-1299 265-432 (479)
100 PF14781 BBS2_N: Ciliary BBSom 70.1 16 0.00034 37.0 7.1 53 1089-1162 47-99 (136)
101 KOG0279 G protein beta subunit 69.9 1.5E+02 0.0034 33.6 15.3 154 1089-1270 148-312 (315)
102 KOG0274 Cdc4 and related F-box 67.9 57 0.0012 41.5 13.3 139 1109-1272 341-483 (537)
103 TIGR03866 PQQ_ABC_repeats PQQ- 67.7 2.2E+02 0.0048 32.3 30.9 39 975-1020 10-48 (300)
104 PF08662 eIF2A: Eukaryotic tra 67.6 1.7E+02 0.0036 31.9 15.5 128 994-1191 50-188 (194)
105 KOG4441 Proteins containing BT 67.1 1.1E+02 0.0023 39.5 15.8 188 1065-1274 302-500 (571)
106 KOG3881 Uncharacterized conser 67.0 16 0.00034 42.9 7.4 104 1064-1194 226-332 (412)
107 PHA02713 hypothetical protein; 66.9 90 0.002 40.1 15.2 96 1175-1274 433-534 (557)
108 PF04053 Coatomer_WDAD: Coatom 66.3 3.3E+02 0.0072 33.8 21.9 211 924-1224 45-262 (443)
109 KOG0643 Translation initiation 65.3 1.3E+02 0.0028 34.1 13.4 132 1154-1299 51-197 (327)
110 KOG0271 Notchless-like WD40 re 64.9 1.4E+02 0.0031 35.2 14.2 109 1155-1270 115-234 (480)
111 KOG0321 WD40 repeat-containing 64.6 67 0.0014 40.2 12.2 153 1107-1271 62-248 (720)
112 KOG0289 mRNA splicing factor [ 64.0 3.3E+02 0.0072 32.9 25.6 130 1126-1268 367-503 (506)
113 PF11768 DUF3312: Protein of u 63.8 1.6E+02 0.0035 36.8 15.5 119 1145-1270 195-328 (545)
114 PF15390 DUF4613: Domain of un 63.3 44 0.00096 41.6 10.5 90 1107-1212 122-219 (671)
115 KOG1446 Histone H3 (Lys4) meth 63.2 2.6E+02 0.0056 32.4 15.7 142 1161-1339 108-261 (311)
116 KOG0316 Conserved WD40 repeat- 62.0 2.6E+02 0.0057 31.1 23.4 133 1126-1271 163-300 (307)
117 KOG0305 Anaphase promoting com 61.5 1.4E+02 0.0031 37.1 14.6 141 1108-1272 312-462 (484)
118 PF14761 HPS3_N: Hermansky-Pud 61.4 93 0.002 34.3 11.6 66 1149-1214 128-205 (215)
119 PHA03098 kelch-like protein; P 60.6 76 0.0017 40.5 13.0 111 1161-1274 338-465 (534)
120 PF13360 PQQ_2: PQQ-like domai 60.1 2.7E+02 0.0059 30.7 19.9 171 1064-1268 3-188 (238)
121 KOG1188 WD40 repeat protein [G 60.0 1.5E+02 0.0032 34.6 13.2 147 1108-1275 39-200 (376)
122 PHA02790 Kelch-like protein; P 59.8 1.8E+02 0.0039 36.6 15.8 94 1174-1274 376-471 (480)
123 KOG4378 Nuclear protein COP1 [ 59.5 4.1E+02 0.009 32.6 18.3 53 965-1022 131-184 (673)
124 KOG0647 mRNA export protein (c 58.7 1E+02 0.0023 35.3 11.5 128 1127-1270 49-183 (347)
125 PF08662 eIF2A: Eukaryotic tra 57.6 2.8E+02 0.0061 30.1 17.5 136 1110-1260 18-162 (194)
126 KOG0316 Conserved WD40 repeat- 55.4 2E+02 0.0044 31.9 12.6 134 1165-1336 71-209 (307)
127 COG5161 SFT1 Pre-mRNA cleavage 54.8 6.7 0.00014 49.9 1.8 92 99-207 87-178 (1319)
128 KOG0270 WD40 repeat-containing 54.5 3.2E+02 0.0069 33.1 15.0 95 1077-1183 163-275 (463)
129 TIGR03300 assembly_YfgL outer 52.6 4.8E+02 0.011 31.3 18.5 95 1165-1269 241-336 (377)
130 KOG1332 Vesicle coat complex C 52.6 85 0.0018 34.9 9.4 96 1126-1226 31-136 (299)
131 KOG1408 WD40 repeat protein [F 52.4 1.6E+02 0.0034 37.6 12.5 96 1169-1271 613-713 (1080)
132 KOG0289 mRNA splicing factor [ 51.4 2.3E+02 0.005 34.2 13.2 58 753-855 361-418 (506)
133 KOG0640 mRNA cleavage stimulat 50.4 2E+02 0.0044 33.1 12.0 133 1126-1269 281-425 (430)
134 KOG3621 WD40 repeat-containing 50.2 55 0.0012 41.5 8.5 128 1089-1239 75-210 (726)
135 PF00780 CNH: CNH domain; Int 49.8 4.4E+02 0.0095 30.0 21.3 65 1107-1185 103-168 (275)
136 KOG0292 Vesicle coat complex C 49.5 1.2E+02 0.0027 39.5 11.4 132 1107-1271 19-165 (1202)
137 KOG0275 Conserved WD40 repeat- 48.7 57 0.0012 37.2 7.5 162 1083-1269 207-376 (508)
138 PF14761 HPS3_N: Hermansky-Pud 48.5 4.2E+02 0.0091 29.4 17.0 84 1081-1182 126-214 (215)
139 PLN02153 epithiospecifier prot 47.5 5.5E+02 0.012 30.5 17.1 84 1175-1260 160-260 (341)
140 KOG3621 WD40 repeat-containing 47.3 64 0.0014 40.9 8.5 112 1159-1272 39-155 (726)
141 cd00216 PQQ_DH Dehydrogenases 46.3 4.4E+02 0.0096 33.2 16.3 61 1200-1263 400-460 (488)
142 PF14779 BBS1: Ciliary BBSome 45.0 94 0.002 35.3 8.7 75 1086-1178 173-254 (257)
143 KOG1275 PAB-dependent poly(A) 44.8 99 0.0022 40.5 9.6 133 1108-1269 186-340 (1118)
144 TIGR03300 assembly_YfgL outer 44.7 3.2E+02 0.007 32.9 14.4 126 1127-1269 250-377 (377)
145 KOG1407 WD40 repeat protein [F 44.4 3E+02 0.0065 31.2 12.0 100 1166-1272 78-178 (313)
146 PF00325 Crp: Bacterial regula 44.0 33 0.00072 25.7 3.3 26 1403-1428 4-29 (32)
147 KOG0276 Vesicle coat complex C 43.4 8.1E+02 0.018 31.2 19.9 134 1126-1273 33-173 (794)
148 PRK01742 tolB translocation pr 43.3 1.7E+02 0.0037 36.2 11.8 95 1174-1272 228-323 (429)
149 PLN02153 epithiospecifier prot 42.1 6.6E+02 0.014 29.8 16.4 90 1174-1263 217-326 (341)
150 KOG2079 Vacuolar assembly/sort 42.0 59 0.0013 43.2 7.2 101 1109-1225 99-206 (1206)
151 KOG0263 Transcription initiati 41.5 4.7E+02 0.01 33.9 14.7 117 611-770 529-650 (707)
152 KOG0274 Cdc4 and related F-box 41.1 8.8E+02 0.019 31.0 18.9 134 1109-1270 261-399 (537)
153 KOG2111 Uncharacterized conser 40.9 6.5E+02 0.014 29.4 24.5 151 970-1189 107-263 (346)
154 PF14781 BBS2_N: Ciliary BBSom 40.8 2.4E+02 0.0052 28.8 9.8 69 1107-1184 8-83 (136)
155 KOG1188 WD40 repeat protein [G 40.8 5.4E+02 0.012 30.3 13.7 24 753-776 42-65 (376)
156 PRK11138 outer membrane biogen 40.0 4.9E+02 0.011 31.6 15.0 99 1164-1270 293-393 (394)
157 PTZ00421 coronin; Provisional 39.1 9E+02 0.02 30.5 30.8 145 1109-1272 138-291 (493)
158 KOG0772 Uncharacterized conser 39.0 2.5E+02 0.0055 34.5 11.3 102 1167-1270 284-393 (641)
159 TIGR03548 mutarot_permut cycli 38.6 6.1E+02 0.013 29.8 15.1 102 1160-1261 118-233 (323)
160 PF12341 DUF3639: Protein of u 38.4 50 0.0011 23.7 3.3 15 753-767 13-27 (27)
161 KOG2394 WD40 protein DMR-N9 [G 38.4 67 0.0015 39.4 6.5 87 1156-1247 291-382 (636)
162 KOG0273 Beta-transducin family 37.4 8.7E+02 0.019 29.9 26.4 88 1126-1222 430-521 (524)
163 KOG0303 Actin-binding protein 36.9 5E+02 0.011 31.1 12.9 159 1154-1343 80-273 (472)
164 PF05096 Glu_cyclase_2: Glutam 36.7 7.1E+02 0.015 28.6 15.0 98 1165-1274 55-158 (264)
165 KOG4649 PQQ (pyrrolo-quinoline 35.7 3.3E+02 0.0071 30.8 10.6 71 361-437 52-122 (354)
166 PF08728 CRT10: CRT10; InterP 34.6 1.1E+02 0.0023 40.0 7.9 65 1206-1270 177-245 (717)
167 PF05694 SBP56: 56kDa selenium 34.6 5.8E+02 0.013 31.4 13.4 117 1172-1298 220-362 (461)
168 KOG0285 Pleiotropic regulator 34.5 3.7E+02 0.0081 31.7 11.2 137 1127-1274 298-442 (460)
169 PF13360 PQQ_2: PQQ-like domai 34.3 6.5E+02 0.014 27.5 14.2 98 1164-1269 35-138 (238)
170 KOG1896 mRNA cleavage and poly 34.0 3.6E+02 0.0078 36.9 12.4 93 1128-1226 1116-1215(1366)
171 KOG0268 Sof1-like rRNA process 33.9 2E+02 0.0043 33.9 9.1 126 1126-1269 208-343 (433)
172 KOG0308 Conserved WD40 repeat- 32.9 9.5E+02 0.021 30.8 15.0 111 1154-1271 116-243 (735)
173 KOG1332 Vesicle coat complex C 32.4 3.4E+02 0.0075 30.4 10.1 108 1164-1273 21-136 (299)
174 KOG4328 WD40 protein [Function 32.4 1.1E+02 0.0024 36.9 7.0 90 1237-1351 184-275 (498)
175 KOG2048 WD40 repeat protein [G 31.9 1.2E+03 0.027 30.0 22.6 169 1065-1269 48-231 (691)
176 KOG0269 WD40 repeat-containing 31.5 1.9E+02 0.0041 37.3 9.1 55 1126-1186 197-254 (839)
177 KOG0263 Transcription initiati 31.1 2.2E+02 0.0049 36.6 9.7 99 1108-1223 546-648 (707)
178 KOG0310 Conserved WD40 repeat- 30.9 1.1E+03 0.024 29.1 15.9 127 1155-1298 153-285 (487)
179 KOG4547 WD40 repeat-containing 30.7 1.2E+03 0.026 29.5 15.7 138 1108-1263 69-211 (541)
180 KOG0280 Uncharacterized conser 30.7 8.3E+02 0.018 28.3 12.9 93 1174-1268 46-148 (339)
181 KOG0308 Conserved WD40 repeat- 30.6 5.3E+02 0.012 32.9 12.4 136 1127-1269 139-283 (735)
182 KOG0650 WD40 repeat nucleolar 30.1 1.3E+02 0.0029 37.5 7.2 67 129-201 618-686 (733)
183 KOG1407 WD40 repeat protein [F 29.9 6.8E+02 0.015 28.5 11.9 95 1108-1221 117-216 (313)
184 KOG3914 WD repeat protein WDR4 29.9 6.5E+02 0.014 30.2 12.5 146 1105-1271 70-223 (390)
185 PRK03629 tolB translocation pr 29.8 5.5E+02 0.012 31.7 13.2 95 1174-1272 223-318 (429)
186 KOG0293 WD40 repeat-containing 29.8 5.6E+02 0.012 30.9 11.8 157 547-771 354-515 (519)
187 PF06977 SdiA-regulated: SdiA- 29.8 86 0.0019 35.6 5.5 60 375-438 184-248 (248)
188 KOG0288 WD40 repeat protein Ti 29.8 5.2E+02 0.011 31.2 11.6 128 1128-1267 322-457 (459)
189 PF14779 BBS1: Ciliary BBSome 29.7 1.4E+02 0.0031 33.9 7.1 202 1093-1338 18-256 (257)
190 PRK04922 tolB translocation pr 29.1 5.3E+02 0.011 31.9 12.9 93 1174-1270 228-321 (433)
191 PRK02889 tolB translocation pr 28.4 4.2E+02 0.0092 32.7 11.9 94 1174-1271 220-314 (427)
192 KOG2394 WD40 protein DMR-N9 [G 28.4 2.2E+02 0.0047 35.3 8.5 113 1155-1269 123-248 (636)
193 KOG4227 WD40 repeat protein [G 27.9 1.1E+03 0.024 28.2 13.5 188 1067-1275 119-326 (609)
194 KOG0307 Vesicle coat complex C 27.7 1.5E+02 0.0032 39.8 7.6 56 1126-1183 88-148 (1049)
195 PF02333 Phytase: Phytase; In 27.6 1.2E+03 0.026 28.4 17.6 119 1174-1298 78-213 (381)
196 KOG0275 Conserved WD40 repeat- 27.5 6.6E+02 0.014 29.1 11.5 25 753-777 362-386 (508)
197 KOG1587 Cytoplasmic dynein int 27.1 1.4E+03 0.031 29.2 17.2 85 1082-1183 235-324 (555)
198 KOG1900 Nuclear pore complex, 27.1 3.5E+02 0.0076 37.4 10.8 110 1165-1282 90-216 (1311)
199 COG5276 Uncharacterized conser 26.9 1.1E+03 0.023 27.6 16.1 125 1146-1275 77-204 (370)
200 TIGR02276 beta_rpt_yvtn 40-res 26.5 1.4E+02 0.0031 22.9 4.8 37 968-1011 4-42 (42)
201 KOG4328 WD40 protein [Function 25.4 3.5E+02 0.0076 32.9 9.4 113 1154-1271 185-309 (498)
202 KOG0288 WD40 repeat protein Ti 25.4 5.7E+02 0.012 30.8 10.9 26 752-777 400-425 (459)
203 KOG0974 WD-repeat protein WDR6 25.4 1.8E+02 0.0039 38.7 7.7 107 1156-1269 8-115 (967)
204 TIGR03547 muta_rot_YjhT mutatr 25.0 6.8E+02 0.015 29.7 12.5 18 1064-1083 168-185 (346)
205 PRK04792 tolB translocation pr 24.9 5.2E+02 0.011 32.2 11.8 94 1175-1272 243-337 (448)
206 KOG1538 Uncharacterized conser 24.9 1.3E+03 0.027 29.8 14.0 91 1172-1269 201-291 (1081)
207 PF14655 RAB3GAP2_N: Rab3 GTPa 24.5 1.6E+02 0.0035 36.1 6.8 44 1084-1136 51-97 (415)
208 PRK05137 tolB translocation pr 24.2 7.9E+02 0.017 30.3 13.2 111 1155-1269 201-320 (435)
209 smart00036 CNH Domain found in 24.1 1E+03 0.023 27.7 13.5 141 1110-1268 14-182 (302)
210 KOG0305 Anaphase promoting com 23.9 6.5E+02 0.014 31.5 11.8 99 1165-1271 188-288 (484)
211 KOG0295 WD40 repeat-containing 23.8 1.3E+03 0.028 27.6 16.8 67 670-777 306-372 (406)
212 KOG2919 Guanine nucleotide-bin 23.5 1.3E+03 0.027 27.3 16.5 159 1090-1271 156-327 (406)
213 PF13404 HTH_AsnC-type: AsnC-t 23.5 78 0.0017 25.2 2.6 38 1389-1426 5-42 (42)
214 PLN02193 nitrile-specifier pro 23.3 1.5E+03 0.033 28.2 16.9 97 1162-1260 275-386 (470)
215 TIGR02800 propeller_TolB tol-p 23.3 4E+02 0.0086 32.5 10.3 94 1174-1271 214-308 (417)
216 TIGR03548 mutarot_permut cycli 23.3 1.2E+03 0.027 27.1 15.3 110 1162-1274 69-195 (323)
217 PRK04792 tolB translocation pr 23.2 1.1E+03 0.024 29.3 14.2 94 1175-1272 287-381 (448)
218 KOG0640 mRNA cleavage stimulat 22.7 2.7E+02 0.0058 32.1 7.4 92 1174-1269 194-289 (430)
219 KOG0280 Uncharacterized conser 22.2 1.3E+03 0.028 26.9 14.7 154 1109-1270 24-195 (339)
220 KOG1240 Protein kinase contain 22.2 1.1E+03 0.025 32.6 13.8 148 1007-1212 1053-1213(1431)
221 KOG0301 Phospholipase A2-activ 22.2 9.5E+02 0.021 31.0 12.5 108 1154-1273 178-290 (745)
222 PRK03629 tolB translocation pr 21.9 1.5E+03 0.033 27.7 16.2 81 1174-1257 267-348 (429)
223 PRK00178 tolB translocation pr 21.1 9.1E+02 0.02 29.6 12.9 94 1174-1271 223-317 (430)
224 PHA02790 Kelch-like protein; P 20.9 5.3E+02 0.011 32.4 10.8 95 1175-1274 288-385 (480)
225 KOG0645 WD40 repeat protein [G 20.7 1.3E+03 0.028 26.5 27.1 260 975-1336 36-307 (312)
226 PF12234 Rav1p_C: RAVE protein 20.4 8.2E+02 0.018 31.8 12.1 83 1084-1181 67-155 (631)
227 KOG0639 Transducin-like enhanc 20.3 5.4E+02 0.012 31.7 9.6 132 611-783 415-553 (705)
228 COG3204 Uncharacterized protei 20.2 3.1E+02 0.0066 31.8 7.3 64 373-440 244-312 (316)
229 KOG2096 WD40 repeat protein [G 20.1 1.4E+03 0.031 26.7 18.3 54 967-1021 291-350 (420)
No 1
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.5e-195 Score=1750.69 Aligned_cols=1286 Identities=42% Similarity=0.682 Sum_probs=1066.3
Q ss_pred ccceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCccc
Q 000545 2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES 81 (1432)
Q Consensus 2 ~~~~~~~~~~pT~V~~s~~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~LeIy~v~~~~~g~~~~ 81 (1432)
.|++|++.|+||+|+||++|+||+.... ||||+++|.|+||++..++.+.+.
T Consensus 1 m~~vykq~h~~T~ve~s~ag~Ft~~~~~---------------------------nlvV~~~N~L~vyri~~~~e~~t~- 52 (1366)
T KOG1896|consen 1 MFAVYKQEHDPTVVENSSAGLFTNNRTE---------------------------NLVVAGTNILRVYRISRDAEALTK- 52 (1366)
T ss_pred CcchhhhccCchhhccceeeeEecCCCc---------------------------ceEEecccEEEEEEeccchhhccc-
Confidence 3788999999999999999999977654 999999999999999865333211
Q ss_pred cCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEEeee
Q 000545 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1432)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~~v~~~~l~G~I~~l~~~r~~~~~~~~~~D~Lll~~~~~klsil~~d~~~~~l~t~Slh~ 161 (1432)
++.+.|+...+.+|+|+++|.+||+|++|++++..|+ .+|+|+++|++||+|+|+||+.+|.|+|.||||
T Consensus 53 ------~~~~~~~~~~~~~LeLv~~~~l~GnV~si~~~~~~gs----~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHy 122 (1366)
T KOG1896|consen 53 ------NDPGDMGKAHRKKLELVAEFKLFGNVTSIAKLPLKGS----NRDALLLLFKDAKISVLEFDPQTNSLRTLSLHY 122 (1366)
T ss_pred ------cCccccccccceEEEEEEEEEeecceeeEEEeecCCC----CcceEEEEeccceEEEEEecCCccceeeeeeEE
Confidence 1222333344567999999999999999999999987 699999999999999999999999999999999
Q ss_pred ecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCCCCCCCCCCCCCCCCCcccceeccEEEEcccC
Q 000545 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1432)
Q Consensus 162 ~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~y~~~l~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~l~~l 241 (1432)
||.+++ +.|++....+|.++|||++||++|++|+..++||||++.+ .+++++ ....++...+++.+||+|.+.+|
T Consensus 123 fE~~~~---~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m~iLpf~~~e-~~~~~~-~~~~~~~~ss~~~pSyvi~~reL 197 (1366)
T KOG1896|consen 123 FEGPEF---RKGLVGRAKIPTVRVDPDSRCALLLVYGLRMAILPFRVNE-HLDDEE-LFPSGFSKSSFTAPSYVIALREL 197 (1366)
T ss_pred eccccc---cccccccccCceEEECCCCCeEEEEEecceEEEeeccccc-cccccc-cccccccccccccceeEEEhhhh
Confidence 999863 4555555678999999999999999999999999998863 344333 22222233457889999999999
Q ss_pred C--CCceeeEeeecCCCCceEEEEeecCCCcccccccccceeEEEEEEEeecccccceeeEeccCCcccceEEEecCCCC
Q 000545 242 D--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIG 319 (1432)
Q Consensus 242 d--i~~V~D~~FL~gy~~PtlavL~e~~~tw~gr~~~~~dt~~~~~~sLd~~~k~~~~i~s~~~Lp~~~~~LipvP~p~g 319 (1432)
| |+||+|++|||||++||+|+||||.+||+||+..|+|||.+.+++||+++|.||+||++.+||+||+++.++|.|+|
T Consensus 198 deki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piG 277 (1366)
T KOG1896|consen 198 DEKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIG 277 (1366)
T ss_pred hhhhccceeEEeecCcccceEEEEecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCc
Confidence 9 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCeEEEEecCc-cceEEccCCCccCCCCcccCCCCceeEeeceeEEEeeCceEEEEeCCCCEEEEEEEEc-Cee
Q 000545 320 GVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYD-GRV 397 (1432)
Q Consensus 320 GvLVig~n~I~y~~~~~-~~~~~~n~~~~~~~~~~~~p~~~~~~~ld~~~~~~~~~~~~Ll~~~~G~l~~l~l~~d-g~~ 397 (1432)
||||++.|.++|.+|++ ++++++|++++..+.++.+||+.+.+.+|++..+|++.++++++..+||+|+|+|.+| ++.
T Consensus 278 gvLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~ 357 (1366)
T KOG1896|consen 278 GVLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSGVRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRS 357 (1366)
T ss_pred cEEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccceEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccc
Confidence 99999999999999998 5999999999999999999999999999999999999999999999999999999999 789
Q ss_pred eeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEeeCCCccccCCCCccccCCcccCCcchhhccCCCcchhhc
Q 000545 398 VQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD 477 (1432)
Q Consensus 398 V~~l~i~~~~~~~~~s~l~~l~~g~lF~gS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1432)
|+.+++..+...++++|++...+++||+||+.|||+|+||.+....+.+...+ ++.+.+....+.++.+...+..+ +
T Consensus 358 V~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~~e~~~r--e~~d~~~~~~~~~~~d~~~d~~~-~ 434 (1366)
T KOG1896|consen 358 VQLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRASEGVRR--EEGDTESDGYSKKRVDDTQDVRR-D 434 (1366)
T ss_pred hhhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccCCccccc--cccCCcCCcchhhcccchhhhhh-h
Confidence 99999999999999999999999999999999999999999876532222222 22222222233333321101111 1
Q ss_pred ccCcccc------cccCCCCCCcccccceeEEEEeeeecccCCccccccccccccCC---------------CccCCCCC
Q 000545 478 MVNGEEL------SLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA---------------SATGISKQ 536 (1432)
Q Consensus 478 ~~~~~~~------~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~D~~vg~~~~~~~---------------~~sG~g~~ 536 (1432)
+...++. +-||+++..+ ...+.|++||+|+|+|||.||++|.....+. .|+|+|+.
T Consensus 435 d~~~~~~~~~g~~~~~g~~a~~t---~~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~~sGhgkn 511 (1366)
T KOG1896|consen 435 DEKSAELFEAGSEENYGSGAQET---VQPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVATSGHGKN 511 (1366)
T ss_pred hhhccchhhccccccCCccccee---eeeeEEeehhccccccccccceeccccchhhhccCCCCCCCeEEEEEeccCCCC
Confidence 1111111 2222221111 1238899999999999999999998654221 18899999
Q ss_pred CCeEE------------EecCCCCEEEEEEecCCCCCCCCcccccccCcCcceEEEEeccccceEEEeccceeeeecccc
Q 000545 537 SNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVD 604 (1432)
Q Consensus 537 g~L~~------------~~L~g~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~g 604 (1432)
|.|.+ ++||||.++|||..+....+ .++..|.||++|..++|+||++|+++.|++. .+
T Consensus 512 gaL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~---------~~~~~h~~lilS~e~~t~il~tge~~~Ev~~-s~ 581 (1366)
T KOG1896|consen 512 GALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKRE---------EDNTQHLYLILSTESRTMILETGEELLEVSG-SG 581 (1366)
T ss_pred cceEEEeecccceeeEEEEecCeeeEEEEEEeccccc---------cccCcceEEEeecccchhhhhccchhhhccc-ce
Confidence 99987 68999999999998644322 2234599999999999999999999999975 58
Q ss_pred cccccceEEEeeecCCcEEEEEecCcEEEEcCC-cceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEE
Q 000545 605 YFVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLL 683 (1432)
Q Consensus 605 F~~~~~Tl~ag~l~~~~~ivQVt~~~irli~~~-~~~~~~~~~~~~~~~~~~~~~~~I~~asi~d~~vll~~~~g~i~~l 683 (1432)
|..+++||++|+++++.+||||||+++|++|++ ...|.++.. .+..+++++++||||++..+.|.+.+|
T Consensus 582 f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd----------~~~~vv~~sv~dpyv~v~~~~g~i~~~ 651 (1366)
T KOG1896|consen 582 FTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFD----------SGAIVVQTSVADPYVAVRSSEGRITLY 651 (1366)
T ss_pred eEeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccc----------cCCcEEEEeccCceEEEEEcCCceEEE
Confidence 999999999999988899999999999999995 478888882 445689999999999999999999999
Q ss_pred EecCCCceEEeecCccccCCCCceEEEEeeccCCC-------------CcccccccccccccCCccccccCCCCCCCCCC
Q 000545 684 VGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGP-------------EPWLRKTSTDAWLSTGVGEAIDGADGGPLDQG 750 (1432)
Q Consensus 684 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1432)
.++....+|.+.++ ....+.+++++.|.+. .++.+.. .++...... .+.+.++++...+.
T Consensus 652 ~l~~~s~rl~~~~~-----~s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~-~~~~~~~~~-~kv~~~egg~~~~~ 724 (1366)
T KOG1896|consen 652 DLEEKSHRLALHDP-----MSFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSS-EAEGLQSLP-CKVDDEEGGSPEQE 724 (1366)
T ss_pred EeccccchhhccCc-----ccceeEEEechhhhccceEEEeeecccCcccccccc-cccccccCC-ccccCCCCCCcccC
Confidence 98776656655554 1344566666665432 2222221 111111111 22222332212222
Q ss_pred cEEEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEee
Q 000545 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ 830 (1432)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~v~~i~~~ 830 (1432)
.+||++++++|+++||++|++++|+.++.|+.++.+|.+...... ..| ...++..+.++..+
T Consensus 725 ~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~---~~~---------------~~s~~~~l~q~~~~ 786 (1366)
T KOG1896|consen 725 PYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGP---TTN---------------KESEDLELKQLFVN 786 (1366)
T ss_pred ceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCc---ccc---------------ccccchHHHHhhcc
Confidence 389999999999999999999999999999999999987543222 001 11223566677777
Q ss_pred eccCC--CCccEEEEEeeCCeEEEEEEeecCCCCCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCC----
Q 000545 831 RWSAH--HSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREE---- 904 (1432)
Q Consensus 831 ~~g~~--~~~~~L~vgl~~G~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rF~k~~~~~~~~~~---- 904 (1432)
.+|.+ .+.+||++-+.+|.++.|++|+..+ + +...++|+|+|+....++.
T Consensus 787 ~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~--------------------~----~~~~~~f~kvp~~~~~~~~~p~~ 842 (1366)
T KOG1896|consen 787 PLGSEIVFKEPHLFLVVSDNEILIYKAFPQLS--------------------Q----GNLKVFFKKVPHNLNIRTDKPHF 842 (1366)
T ss_pred ccchhhhccCCceEEEEeCceEEEEeeccccC--------------------c----cchhhhhhhCCHhhcccccCCcc
Confidence 88877 6899999999999999999985111 0 1124589999875422111
Q ss_pred -------------CCCCCCccceEEeeccCCceEEEEeCCCceEEEE-eCCceEEeeccCCCceEEEeeccCCCCCceEE
Q 000545 905 -------------TPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMV-FRERLRVHPQLCDGSIVAFTVLHNVNCNHGFI 970 (1432)
Q Consensus 905 -------------~~~~lg~~~v~~f~~~~g~~~Vf~~g~rP~~i~~-~~~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i 970 (1432)
++.+.-.++++.|++++|++|||+||++|+||+. .+|.+++||+.++++|.+|++||+.+||+||+
T Consensus 843 ~~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfi 922 (1366)
T KOG1896|consen 843 LCKKREGGGAEEGASVSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFI 922 (1366)
T ss_pred cchhhccccccccccccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceE
Confidence 1122334677899999999999999999999987 59999999999999999999999999999999
Q ss_pred EEEecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEEEeecccccccccccccccccccccccCCCC
Q 000545 971 YVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNL 1050 (1432)
Q Consensus 971 ~~~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 1050 (1432)
|++.++.|+||.++....||+.||+|| |||+.|||+++||++.++|+|+++.+. ++ +...+|++. +..
T Consensus 923 yvd~~~~l~i~~lp~~~~Ydn~wPvkk-Ipl~~T~~~vvYh~e~~vy~v~t~~~~--~~---~~~~~d~~e------~~~ 990 (1366)
T KOG1896|consen 923 YVDRQGELVICVLPEALSYDNKWPVKK-IPLRKTPHQVVYHYEKKVYAVITSTPV--PY---ERLGEDGEE------EVI 990 (1366)
T ss_pred EECCCceEEEEEcchhcccCCCCcccc-cccccchhheeeeccceEEEEEEeccc--ee---eeccccccc------ccc
Confidence 999999999999999999999999999 999999999999999999999998541 22 111223221 334
Q ss_pred CccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeec-CCCCcceEEEEEeeeecCCCccccee
Q 000545 1051 SSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNT-TTKENETLLAIGTAYVQGEDVAARGR 1129 (1432)
Q Consensus 1051 ~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~-~~~~~~~~lvVGT~~~~~e~~~~~Gr 1129 (1432)
+.+|..+.|..++++|+|++| .+|+.++.|+|++||++++|+.+.|..+ +++++++||+|||+++.|||.++|||
T Consensus 991 ~~de~~~~p~~~~f~i~LisP----~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr 1066 (1366)
T KOG1896|consen 991 SRDENVIHPEGEQFSIQLISP----ESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGR 1066 (1366)
T ss_pred cccccccccccccceeEEecC----CccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCccc
Confidence 567778889999999999999 4899999999999999999999999865 45567999999999999999999999
Q ss_pred EEEEEEee---cCCCC--CccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEc-cCCeeeeEEeecCCCeeEEEEE
Q 000545 1130 VLLFSTGR---NADNP--QNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKW-TGTELNGIAFYDAPPLYVVSLN 1203 (1432)
Q Consensus 1130 i~vf~i~~---~~~~~--~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~-~~~~L~~~a~~~~~~~~i~sl~ 1203 (1432)
+++|+|++ +|++| +.|||+++++|+||+|.++|+++|+|+.+.|+||+||+| .+..|.++||+|. |.|+++++
T Consensus 1067 ~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~-~~yv~s~~ 1145 (1366)
T KOG1896|consen 1067 IHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDL-PLYVHSMK 1145 (1366)
T ss_pred EEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEEecc-ceeEEehh
Confidence 99999987 77776 447999999999999999999999999999999999999 5678999999999 99999999
Q ss_pred EeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceE
Q 000545 1204 IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKL 1283 (1432)
Q Consensus 1204 ~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL 1283 (1432)
+.||+|++||+|||++|++|++++.+|.+++||..++.|++++||+|+++|+|+++|+++||++|.|.|++++|++|+||
T Consensus 1146 ~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RL 1225 (1366)
T KOG1896|consen 1146 VVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRL 1225 (1366)
T ss_pred hhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEE--EEecCCcEEEEEeCChHhHHHHHHHHHHHHhcCCC
Q 000545 1284 LSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALL--FGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPH 1361 (1432)
Q Consensus 1284 ~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il--~~t~~GsIg~l~pl~e~~~~~L~~Lq~~l~~~~~~ 1361 (1432)
+++++||+|..+++|.+...... .+ . + .+.+... |||++|++|.++|++|+.||||..||++|...++|
T Consensus 1226 v~radfhvg~~vs~m~~lp~~~~-~e-~----~---~~~~~~~~v~gtlDG~l~~~~Pl~e~~YRRL~~lQn~L~~~~~h 1296 (1366)
T KOG1896|consen 1226 VRRADFHVGAHVSTMFRLPCHQN-AE-F----G---SNSPMFYEVFGTLDGGLGHLVPLDEKTYRRLLMLQNALMDRLPH 1296 (1366)
T ss_pred eeeeeeEeccceeeeEecccccc-ch-h----c---cCCchhhhhhcccCCceeEEecCCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999998653221 10 0 1 1233444 89999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCCCCCCCCcceeHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhccCCC
Q 000545 1362 VAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL 1432 (1432)
Q Consensus 1362 ~~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlle~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~~~~~~~ 1432 (1432)
+|||||++||..+... ....+.+++|||+||.+|..|+.++|.++|+++|+++.+|+++|-++...++||
T Consensus 1297 v~GLNPr~yR~~~s~~-~~~n~~r~ilDg~ll~~f~yl~~~er~elA~kiGt~~~eIl~DLvel~~~~s~~ 1366 (1366)
T KOG1896|consen 1297 VGGLNPRAYRLLDSSL-QLSNSLRSILDGELLNRFSYLSMSEREELAHKIGTTRKEILDDLVELDRLTSSL 1366 (1366)
T ss_pred hcCCCHHHhhhccchh-hhcCCCcccchHhHHHHhhccchhhHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Confidence 9999999999987665 335789999999999999999999999999999999999999999999999886
No 2
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-159 Score=1418.36 Aligned_cols=1067 Identities=21% Similarity=0.312 Sum_probs=894.2
Q ss_pred ccceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCccc
Q 000545 2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES 81 (1432)
Q Consensus 2 ~~~~~~~~~~pT~V~~s~~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~LeIy~v~~~~~g~~~~ 81 (1432)
+|+|+.++|+||+|.+|+.||||++... ||+|||+|+|+||.+.+ +|
T Consensus 1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~---------------------------nlivAk~~~lei~~~~~--~G---- 47 (1096)
T KOG1897|consen 1 SMNYVVTAQKPTAVVTAVVGNFTSPENL---------------------------NLIVAKGNRLEILLVEP--NG---- 47 (1096)
T ss_pred CeeEEEEecCCceEeEEEeecccCccce---------------------------eeeeeccceEEEEeecc--cc----
Confidence 5889999999999999999999999865 99999999999999763 36
Q ss_pred cCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEEeee
Q 000545 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1432)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~~v~~~~l~G~I~~l~~~r~~~~~~~~~~D~Lll~~~~~klsil~~d~~~~~l~t~Slh~ 161 (1432)
|+.+.+.++||+|..|+.||++|. .+|+|+|+|+++++++|+||.+..+..|+...
T Consensus 48 -------------------Lq~i~sv~ifg~I~~i~~fRp~g~----~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~- 103 (1096)
T KOG1897|consen 48 -------------------LQPITSVPIFGTIATIALFRPPGS----DKDYLFVATDSYRYFILEWDEESIQVVTRAHG- 103 (1096)
T ss_pred -------------------ceeeEeeccceeEEEEEeecCCCC----CcceEEEEECcceEEEEEEccccceEEEEecc-
Confidence 999999999999999999999997 79999999999999999999975556665443
Q ss_pred ecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCCCCCCCCCCCCCCCCCcccceeccEEEEcccC
Q 000545 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1432)
Q Consensus 162 ~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~y~~~l~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~l~~l 241 (1432)
+. ..|+| |+..+|++++|||++|.|++++|++.+++||+.....+ ........|.+++.++
T Consensus 104 --~v---~dr~g-r~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sh-------------t~~s~l~~fn~rfdel 164 (1096)
T KOG1897|consen 104 --DV---SDRSG-RPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESH-------------TGGSLLKAFNVRFDEL 164 (1096)
T ss_pred --cc---ccccc-ccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccc-------------cCcccccccccccCcc
Confidence 22 47899 45799999999999999999999999999999865211 0011245688887777
Q ss_pred CCCceeeEeeecCCCCceEEEEeecCCCcccccccccceeEEEEEEEeecccc-cceeeEeccCCcccceEEEecCCCCe
Q 000545 242 DMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQ-HPLIWSAMNLPHDAYKLLAVPSPIGG 320 (1432)
Q Consensus 242 di~~V~D~~FL~gy~~PtlavL~e~~~tw~gr~~~~~dt~~~~~~sLd~~~k~-~~~i~s~~~Lp~~~~~LipvP~p~gG 320 (1432)
||.||+||||...||+|+||++.. || +++.|+||+..|. ...+|+ .++..++.++||||.|.||
T Consensus 165 ---~v~Di~fly~~s~pt~~vly~Ds~---~~--------Hv~~yelnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gG 229 (1096)
T KOG1897|consen 165 ---NVYDIKFLYGCSDPTLAVLYKDSD---GR--------HVKTYELNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGG 229 (1096)
T ss_pred ---eEEEEEEEcCCCCCceEEEEEcCC---Cc--------EEEEEEeccchhhccccccc-cccccCCceeeecCCCCce
Confidence 999999999999999999999874 43 3556899998654 466899 8999999999999999999
Q ss_pred EEEEecCeEEEEecCccceEEccCCCccCCCCcccCCCCceeEeeceeEEEeeCceEEEEeCCCCEEEEEEEEcCeeeee
Q 000545 321 VLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQR 400 (1432)
Q Consensus 321 vLVig~n~I~y~~~~~~~~~~~n~~~~~~~~~~~~p~~~~~~~ld~~~~~~~~~~~~Ll~~~~G~l~~l~l~~dg~~V~~ 400 (1432)
|||||++.|+|.++....++ ++. .+++..+. -. .....+..++||+|++|+||+|.+.+.+++|++
T Consensus 230 vlV~ge~~I~Y~~~~~~~ai--~p~--------~~~~~t~~--~~--~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~ 295 (1096)
T KOG1897|consen 230 VLVIGEEFIVYMSGDNFVAI--APL--------TAEQSTIV--CY--GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSG 295 (1096)
T ss_pred EEEEeeeEEEEeeCCceeEe--ccc--------ccCCceEE--Ec--ccccCCccEEEEecCCCcEEEEEeecccccccc
Confidence 99999999999998655443 221 12222211 00 011233445799999999999999999998888
Q ss_pred --EEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEeeCCCccccCCCCccccCCcccCCcchhhccCCCcchhhcc
Q 000545 401 --LDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDM 478 (1432)
Q Consensus 401 --l~i~~~~~~~~~s~l~~l~~g~lF~gS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1432)
|+++|+|++++|+||++|++|+||+||++|||+|+++...+.
T Consensus 296 ~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d------------------------------------ 339 (1096)
T KOG1897|consen 296 LDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPD------------------------------------ 339 (1096)
T ss_pred eEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCC------------------------------------
Confidence 999999999999999999999999999999999999876320
Q ss_pred cCcccccccCCCCCCcccccceeEEEEeeeecccCCccccccccccccCC----CccCCCCCCCeEE------------E
Q 000545 479 VNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYEL------------V 542 (1432)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~D~~vg~~~~~~~----~~sG~g~~g~L~~------------~ 542 (1432)
...+..++++++|||||.||+|.+...+.. .|||++++|+||+ +
T Consensus 340 --------------------~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i 399 (1096)
T KOG1897|consen 340 --------------------VGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASI 399 (1096)
T ss_pred --------------------CCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEe
Confidence 013467899999999999999986652222 3999999999998 6
Q ss_pred ecCCCCEEEEEEecCCCCCCCCcccccccCcCcceEEEEeccccceEEEeccceeeeecccccccccceEEEeeecCCcE
Q 000545 543 ELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRR 622 (1432)
Q Consensus 543 ~L~g~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~~~~Tl~ag~l~~~~~ 622 (1432)
+|||+++||++|.. .+++||.|||+||.++|+||.+++++||+. ..||.++++||+|+++ +++.
T Consensus 400 ~l~Gikg~w~lk~~--------------v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~-~~gf~~~~~Tif~S~i-~g~~ 463 (1096)
T KOG1897|consen 400 DLPGIKGMWSLKSM--------------VDENYDNYLVLSFISETRVLNISEEVEETE-DPGFSTDEQTIFCSTI-NGNQ 463 (1096)
T ss_pred ecCCccceeEeecc--------------ccccCCcEEEEEeccceEEEEEccceEEec-cccccccCceEEEEcc-CCce
Confidence 89999999999854 457899999999999999999998999985 5799999999999999 5677
Q ss_pred EEEEecCcEEEEcCCcceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCccccC
Q 000545 623 VIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIES 702 (1432)
Q Consensus 623 ivQVt~~~irli~~~~~~~~~~~~~~~~~~~~~~~~~~I~~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~ 702 (1432)
++|||+++|||++...+..+|.+| .++.|..|+.+..||+|+..++.+.|+..+....+ ++.. ..
T Consensus 464 lvQvTs~~iRl~ss~~~~~~W~~p----------~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~-e~~~-~~--- 528 (1096)
T KOG1897|consen 464 LVQVTSNSIRLVSSAGLRSEWRPP----------GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLR-EVSH-KE--- 528 (1096)
T ss_pred EEEEecccEEEEcchhhhhcccCC----------CceEEEEEeecceEEEEecCccEEEEEEeecccee-eeee-he---
Confidence 999999999999988777888884 67788999999999999998899998887654421 2222 22
Q ss_pred CCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEE-ecCCeEEEEECCCCceeEEecccc
Q 000545 703 SKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVC-YESGALEIFDVPNFNCVFTVDKFV 781 (1432)
Q Consensus 703 ~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~I~sLp~~~~v~~~~~~~ 781 (1432)
.+.+|+|+.+ +|.+ +.. ..+.+++|| |++-.+.+..+||+.+++... +
T Consensus 529 ~e~evaCLDi----sp~~------------------------d~~-~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~-l- 577 (1096)
T KOG1897|consen 529 FEYEVACLDI----SPLG------------------------DAP-NKSRLLAVGLWSDISMILTFLPDLILITHEQ-L- 577 (1096)
T ss_pred ecceeEEEec----ccCC------------------------CCC-CcceEEEEEeecceEEEEEECCCcceeeeec-c-
Confidence 3788999854 3321 001 124477775 999999999999987765421 1
Q ss_pred cccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEeeeccCCCCccEEEEEeeCCeEEEEEEeecCCC
Q 000545 782 SGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGP 861 (1432)
Q Consensus 782 ~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~~~~~~L~vgl~~G~l~~y~~~~~~~~ 861 (1432)
.-...+++|++..++ .+..||+|+++||.++.|.++..
T Consensus 578 -------------------------------------~~~~iPRSIl~~~~e--~d~~yLlvalgdG~l~~fv~d~~--- 615 (1096)
T KOG1897|consen 578 -------------------------------------SGEIIPRSILLTTFE--GDIHYLLVALGDGALLYFVLDIN--- 615 (1096)
T ss_pred -------------------------------------CCCccchheeeEEee--ccceEEEEEcCCceEEEEEEEcc---
Confidence 012234445666663 23899999999999999997521
Q ss_pred CCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCCCCCCCCccceEEee-ccCCceEEEEeCCCceEEEEeC
Q 000545 862 ENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFK-NISGHQGFFLSGSRPCWCMVFR 940 (1432)
Q Consensus 862 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rF~k~~~~~~~~~~~~~~lg~~~v~~f~-~~~g~~~Vf~~g~rP~~i~~~~ 940 (1432)
.|++++.|. ++ +|.+|+.++. ...+.+.||+||+||+++|+.+
T Consensus 616 -----------------tg~lsd~Kk---~~----------------lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 616 -----------------TGQLSDRKK---VT----------------LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred -----------------cceEccccc---cc----------------cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 155555443 22 7999998766 4556789999999999999999
Q ss_pred CceEEeeccCCCceEEEeeccCCCCCceEEEEEecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEE
Q 000545 941 ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1432)
Q Consensus 941 ~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~ 1020 (1432)
+++.++|+. ...+..+|||++..|++++++++ ++.|+|+++++.++ +|+|+ +|++++||||+|++.+.+|.|+
T Consensus 660 ~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqk----l~irt-vpl~~~prrI~~q~~sl~~~v~ 732 (1096)
T KOG1897|consen 660 GKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQK----LHIRT-VPLGESPRRICYQESSLTFGVL 732 (1096)
T ss_pred CcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhh----cceee-ecCCCChhheEecccceEEEEE
Confidence 999999994 46799999999999999977655 88999999999998 79999 9999999999999999999998
Q ss_pred EeecccccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEe
Q 000545 1021 VSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTL 1100 (1432)
Q Consensus 1021 ~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l 1100 (1432)
|.+.. . ..+. .......++++++|+ .||++++.++|+++|.+.|+++++|
T Consensus 733 s~r~e---~-------~~~~----------------~~ee~~~s~l~vlD~----nTf~vl~~hef~~~E~~~Si~s~~~ 782 (1096)
T KOG1897|consen 733 SNRIE---S-------SAEY----------------YGEEYEVSFLRVLDQ----NTFEVLSSHEFERNETALSIISCKF 782 (1096)
T ss_pred ecccc---c-------chhh----------------cCCcceEEEEEEecC----CceeEEeeccccccceeeeeeeeee
Confidence 87421 0 0010 001125678999997 5889999999999999999999999
Q ss_pred eecCCCCcceEEEEEeeeecC-CCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEE
Q 000545 1101 FNTTTKENETLLAIGTAYVQG-EDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILH 1179 (1432)
Q Consensus 1101 ~~~~~~~~~~~lvVGT~~~~~-e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~ 1179 (1432)
. ++...|++|||+++.+ |++|..|||++|++.+. .+|+++|+++++|+|++|+.|||+|+||+|++|++|
T Consensus 783 ~----~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-----~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLy 853 (1096)
T KOG1897|consen 783 T----DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-----NSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLY 853 (1096)
T ss_pred c----CCCceEEEEEEEeeccCCCCcccceEEEEEEecC-----CceeeeeeeeeccceeehhhhCCeEEEecCcEEEEE
Confidence 5 3457999999999976 57899999999999872 469999999999999999999999999999999999
Q ss_pred EccCC-eeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEE
Q 000545 1180 KWTGT-ELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVV 1258 (1432)
Q Consensus 1180 ~~~~~-~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~ 1258 (1432)
+|..+ +|...|.... |+++..|++.+|+|+|||+|+|+++++|+.+++.|+++|||+.|+|++++++ +|+++ +++
T Consensus 854 e~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei-l~~d~--ylg 929 (1096)
T KOG1897|consen 854 EWTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI-LDDDT--YLG 929 (1096)
T ss_pred EccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE-ecCce--EEe
Confidence 99977 5666777778 9999999999999999999999999999999999999999999999999995 88888 899
Q ss_pred EecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEE
Q 000545 1259 SDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIA 1338 (1432)
Q Consensus 1259 ~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~ 1338 (1432)
+|++||+++++++...++..++++|+..+.||+|+.|++|++++++....+..++ ..+.++|||.+|+||.+.
T Consensus 930 ae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~-------~~~~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen 930 AENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP-------LEPKVLFGTVNGSIGIIV 1002 (1096)
T ss_pred ecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccC-------CCCcEEEEEccceEEEEE
Confidence 9999999999999888888889999999999999999999999877653222222 246799999999999999
Q ss_pred eCChHhHHHHHHHHHHHHhcCCCCCCCCcccccccccCCCCCCCCCCcceeHHHHHHHcCCCHHHHHHHHHHhCCC----
Q 000545 1339 PLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTT---- 1414 (1432)
Q Consensus 1339 pl~e~~~~~L~~Lq~~l~~~~~~~~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlle~fl~L~~~~q~~ia~~l~~~---- 1414 (1432)
.++.+.+.+|..||++|++.++++||++|..||+|+.+.+. .|++|||||||||+|++|+++++.+|++++..+
T Consensus 1003 sl~~d~~~fL~~Lq~~irk~i~s~gglsH~~yrsf~~e~~~--~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~~~~~ 1080 (1096)
T KOG1897|consen 1003 SLPQDWYDFLEELQRRIRKVIKSVGGLSHMDYRSFEFEKRT--SPVKGFIDGDLIESFLDLSRSKMREIVRGLEHTESLA 1080 (1096)
T ss_pred ecCcchhHHHHHHHHHHHHhhcccCCcchhhHhhhhccccc--CCCcCcccchHHHhhhccCHHHHHHHHhhcccccccC
Confidence 99999999999999999999999999999999999987775 589999999999999999999999999999876
Q ss_pred -HHHHHHHHHHhhhc
Q 000545 1415 -RSQILSNLNDLALG 1428 (1432)
Q Consensus 1415 -~~~i~~~l~~l~~~ 1428 (1432)
++||+|.+||+++.
T Consensus 1081 s~~el~k~vEel~rl 1095 (1096)
T KOG1897|consen 1081 SVQELLKIVEELTRL 1095 (1096)
T ss_pred CHHHHHHHHHHHHhc
Confidence 99999999999863
No 3
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=6.3e-149 Score=1330.87 Aligned_cols=1130 Identities=21% Similarity=0.321 Sum_probs=932.6
Q ss_pred cceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCcccc
Q 000545 3 FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESK 82 (1432)
Q Consensus 3 ~~~~~~~~~pT~V~~s~~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~LeIy~v~~~~~g~~~~~ 82 (1432)
|.|+++++.||+|.|++.|+|.+++.+ ++++++++.|++|++.+ .+|
T Consensus 2 ~lysltlq~~t~i~~~~~g~fs~~k~q---------------------------eIv~~~~s~l~L~~~d~-~~G----- 48 (1205)
T KOG1898|consen 2 FLYSLTLQNQTGIVQAIYGNFSGPKAQ---------------------------EIVLGRGSILELYRIDE-NDG----- 48 (1205)
T ss_pred chhhhhhhcccceeeeehhhccCCchh---------------------------eEEEEeeeEEEEEEecC-CCc-----
Confidence 678899999999999999999999876 99999999999999752 136
Q ss_pred CCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEEeeee
Q 000545 83 NSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCF 162 (1432)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~~v~~~~l~G~I~~l~~~r~~~~~~~~~~D~Lll~~~~~klsil~~d~~~~~l~t~Slh~~ 162 (1432)
||+.++++.+||+|++++++|+++. ++|+|+|++|+|+++||+|+.+++.+ +++|+
T Consensus 49 -----------------~l~~i~~~~vFg~Irsla~~~lt~~----~kD~LaV~SDSGri~il~y~~ek~~~--~~~~q- 104 (1205)
T KOG1898|consen 49 -----------------RLKTICRQEVFGTIRSLAAFRLTGG----TKDYLAVGSDSGRISILEYNNEKNHF--EKLHQ- 104 (1205)
T ss_pred -----------------eEEEEEEEeehhhhhhhhccccCCC----CccEEEEEcCCceEEEEEechhhhcc--ccccc-
Confidence 4999999999999999999999987 89999999999999999999998664 46897
Q ss_pred cCcccccccCCCccccCCCeEEECCCCcEEEEE-ecCceEEEEeCccCCCCCCCCCCCCCCCCCcccceeccEEEEcccC
Q 000545 163 ESPEWLHLKRGRESFARGPLVKVDPQGRCGGVL-VYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1432)
Q Consensus 163 E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~-~y~~~l~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~~l~~l 241 (1432)
|+ ++|+|+||..||+|+++||.|||++++ +|+++|+++--+.... ...+++|+|++..++.++.+..+
T Consensus 105 et----fGks~~rrivpG~y~~idp~Gra~misave~~kLvyvlnrD~~a-------~ltisSpleahk~~sic~~l~~V 173 (1205)
T KOG1898|consen 105 ET----FGKSGCRRIVPGQYLAIDPKGRAVMISAVEKQKLVYVLNRDGAA-------RLTISSPLEAHKAHSICLDLVGV 173 (1205)
T ss_pred cc----cCcccceEeccccEEEEcCCccceeeehhhcCcEEEEEccchhh-------hceecCchhhccCCcEEEEEEEE
Confidence 76 799999999999999999999999998 9999999974443322 44689999999999999999999
Q ss_pred CCCceeeEeeecCCCCceEEEEeec----CCCcccccccccceeEEEEEEEeecccccceeeEeccCCcccceEEEecCC
Q 000545 242 DMKHVKDFIFVHGYIEPVMVILHER----ELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSP 317 (1432)
Q Consensus 242 di~~V~D~~FL~gy~~PtlavL~e~----~~tw~gr~~~~~dt~~~~~~sLd~~~k~~~~i~s~~~Lp~~~~~LipvP~p 317 (1432)
|+ ||.||+||.|+-+ ....+|..+. .+-..+++|+||++.++..+.|+ ..+...++++++||++
T Consensus 174 d~----------gf~np~fa~LE~dy~~a~~d~tgeaa~-~~~~~l~fYeldlglnhvvrk~s-~p~~~~~n~l~~VP~G 241 (1205)
T KOG1898|consen 174 DV----------GFENPIFAALERDYSEADNDPTGEAAT-MTQKVLTFYELDLGLNHVVRKAS-EPVNHFGNFLLTVPGG 241 (1205)
T ss_pred ec----------cCCCceEEEEeechhhcccCchhhhhh-ccccceeEEEEecccceeEEEcc-cccCCCceEEEEecCC
Confidence 98 9999999999955 2334565442 11223455777777777777798 4578899999999996
Q ss_pred ---CCeEEEEecCeEEEEecCccceEEccCCCccCCCCcccCCC--------CceeEeeceeEEEeeCceEEEEeCCCCE
Q 000545 318 ---IGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRS--------SFSVELDAAHATWLQNDVALLSTKTGDL 386 (1432)
Q Consensus 318 ---~gGvLVig~n~I~y~~~~~~~~~~~n~~~~~~~~~~~~p~~--------~~~~~ld~~~~~~~~~~~~Ll~~~~G~l 386 (1432)
..||+||++|++.|++..- ++.-++++|++ ...+...++.+..++.+|+|+|+++||+
T Consensus 242 ~D~ps~v~vc~~n~~~y~~~~d-----------~p~~ri~~~rr~~~L~~~~~~vliv~s~~hk~k~~ff~llqt~~GD~ 310 (1205)
T KOG1898|consen 242 SDGPSGVLVCAENYLLYRNLGD-----------HPDVRIPIERRINELSDAEDGVLIVSSAEHKTKSMFFFLLQTEYGDL 310 (1205)
T ss_pred CCCCcceEEecCceeecccccc-----------CCCEEeccccccccCCccccccEEEEeecccccCCeEEEEEecCCce
Confidence 3599999999999999752 11123344443 1123344444444556799999999999
Q ss_pred EEEEEEEcCeeeeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEeeCCCccccCCCCccccCCcccCCcchhh
Q 000545 387 VLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKR 466 (1432)
Q Consensus 387 ~~l~l~~dg~~V~~l~i~~~~~~~~~s~l~~l~~g~lF~gS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1432)
|+++|.+|++.|..++++|||+.|.+..|+++++|+||+.|++||+.||||.+.+ +++++..
T Consensus 311 fk~tl~~d~d~v~el~lkYfDtvp~a~~L~I~k~GfLf~~sE~~n~~lyq~~~LG----------~~~~~~s-------- 372 (1205)
T KOG1898|consen 311 FKLTLEHDGDNVVELRLKYFDTVPCALQLCILKTGFLFVASEFGNHRLYQFEKLG----------EEDDDFS-------- 372 (1205)
T ss_pred EEEEEecCCCcceeeeeehhcCCccceEEEEeccceEEEhhhccCcceeehhhcC----------CCccchh--------
Confidence 9999999999999999999999999999999999999999999999999999864 3333211
Q ss_pred ccCCCcchhhcccCcccccccCCCCCCcccccceeEEEEeeeecccCCccccccccccccCCC----ccCCCCCCCeEE-
Q 000545 467 LRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADAS----ATGISKQSNYEL- 541 (1432)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~D~~vg~~~~~~~~----~sG~g~~g~L~~- 541 (1432)
+.++. ++. +...|+++ ...+|..++++.|+.|++|+.+++..+++.+ +||+|.+++||+
T Consensus 373 ------~~~~~-~~~-~~~~f~p~--------~l~nL~~~~~i~sl~p~~d~~I~~~~ne~~~qi~~~cg~~~~sslr~l 436 (1205)
T KOG1898|consen 373 ------NAMTS-EEG-KSVFFEPR--------ILKNLSPVSSVESLSPLLDISIGDDSNEDTPQIYSACGRGPRSSLRIL 436 (1205)
T ss_pred ------hhccc-ccC-cceecccc--------ccccccchhhhhccCccceeEeeccCcccchhhhhhhCcCccccchhh
Confidence 11111 111 23345554 3467899999999999999999987766544 999999999987
Q ss_pred -----------EecCC-CCEEEEEEecCCCCCCCCcccccccCcCcceEEEEeccccceEEEeccceeeeeccccccccc
Q 000545 542 -----------VELPG-CKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQG 609 (1432)
Q Consensus 542 -----------~~L~g-~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~~~ 609 (1432)
.+||| +.++|||+.+ .+|.||+|||+||.++|+||++|+.+||+++ .||..++
T Consensus 437 R~gle~sel~~t~lp~~~ta~WTvk~~--------------~td~ydsyivvsF~n~TlVLsIgesveEvtd-sgFls~~ 501 (1205)
T KOG1898|consen 437 RNGLEVSELLVTELPGNPTATWTVKKN--------------ITDVYDSYIVVSFVNGTLVLSIGESVEEVTD-SGFLSTT 501 (1205)
T ss_pred ccccchHHHhhhccCCCCceEEEEcCc--------------cccccceEEEEEeeccEEEEEcchhHHHhhh-cccccCC
Confidence 36887 9999999875 4689999999999999999999999999985 5999999
Q ss_pred ceEEEeeecCCcEEEEEecCcEEEEcCCcceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCC
Q 000545 610 RTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPST 689 (1432)
Q Consensus 610 ~Tl~ag~l~~~~~ivQVt~~~irli~~~~~~~~~~~~~~~~~~~~~~~~~~I~~asi~d~~vll~~~~g~i~~l~~~~~~ 689 (1432)
+||+|+.| |++.+|||++.+||++....++.+|.+| ++.+|+.+.+++.||++++++|+++||+++.++
T Consensus 502 ~Tl~~~l~-Gd~slVQi~~d~iRhi~~~~r~~ew~~P----------~~~~Iv~~avnr~qiVvalSngelvyfe~d~sg 570 (1205)
T KOG1898|consen 502 PTLACSLM-GDDSLVQIHPDGIRHIRPTKRINEWKTP----------ERVRIVKCAVNRRQIVVALSNGELVYFEGDVSG 570 (1205)
T ss_pred ceEEEEEe-cCCcEEEEchhhhhhcccccccccccCC----------CceEEEEEeecceEEEEEccCCeEEEEEeccCc
Confidence 99999999 8899999999999999988888888884 778999999999999999999999999999777
Q ss_pred ceEEeecCccccCCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECC
Q 000545 690 CTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVP 769 (1432)
Q Consensus 690 ~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp 769 (1432)
.+.++...+.+ +..++|+++..+.. +. +.+-||+++..|++++|+||.
T Consensus 571 ql~E~~er~tl---~~~vac~ai~~~~~----------------------------g~-krsrfla~a~~d~~vriisL~ 618 (1205)
T KOG1898|consen 571 QLNEFTERVTL---STDVACLAIGQDPE----------------------------GE-KRSRFLALASVDNMVRIISLD 618 (1205)
T ss_pred cceeeeeeeee---ceeehhhccCCCCc----------------------------ch-hhcceeeeeccccceeEEEec
Confidence 66677655554 67789988744421 11 224499999999999999998
Q ss_pred CCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEeeeccCCCCccEEEEEeeCCe
Q 000545 770 NFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGT 849 (1432)
Q Consensus 770 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~v~~i~~~~~g~~~~~~~L~vgl~~G~ 849 (1432)
+..++... |.|.++++ +.++.++++.-. .|......||++|+.||.
T Consensus 619 p~d~l~~l---------------------s~q~l~~~------------~~s~~iv~~~~~-~~~~~~~L~l~~GL~NGv 664 (1205)
T KOG1898|consen 619 PSDCLQPL---------------------SVQGLSSP------------PESLCIVEMEAT-GGTDVAQLYLLIGLRNGV 664 (1205)
T ss_pred CcceEEEc---------------------cccccCCC------------ccceEEEEeccc-CCccceeEEEEecccccE
Confidence 77765543 67777766 567888776422 233346899999999999
Q ss_pred EEEEEEeecCCCCCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCCCCCCCCccceEEee-ccCCceEEEE
Q 000545 850 ILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFK-NISGHQGFFL 928 (1432)
Q Consensus 850 l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rF~k~~~~~~~~~~~~~~lg~~~v~~f~-~~~g~~~Vf~ 928 (1432)
|+++.+. .++ |++.+.|+ || +|.+|+++|+ ...+.+.|++
T Consensus 665 llR~~id-------------~v~-------G~l~d~rt---R~----------------lG~~pvkLf~~~~~~~s~vL~ 705 (1205)
T KOG1898|consen 665 LLRFVID-------------TVT-------GQLLDIRT---RF----------------LGLRPVKLFPISMRGQSDVLA 705 (1205)
T ss_pred EEEEEec-------------ccc-------cceeeehe---ee----------------eccccceEEEEeecCcceeEE
Confidence 9999863 122 78888887 77 6899999998 6788999999
Q ss_pred eCCCceEEEEeCCceEEeeccCCCceEEEeeccCCCCCceEEEEEecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEE
Q 000545 929 SGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQI 1008 (1432)
Q Consensus 929 ~g~rP~~i~~~~~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I 1008 (1432)
.++|||..|..++.+.++|+ ++.++..+++|++.+||.|++++ +.+.|+|..+....+ .++.+. +|+++||||+
T Consensus 706 lSsr~wl~y~~~~~~h~t~I-sy~~l~~as~~~S~qcpeGiv~i-~~n~l~i~~~~~~g~---~~n~~~-~~l~~tprkv 779 (1205)
T KOG1898|consen 706 LSSRPWLLYTYQQEFHLTPI-SYSTLEHASPFCSEQCPEGIVAI-SKNTLRIIALDKLGK---VLNVDG-FPLAYTPRKV 779 (1205)
T ss_pred ecCChhhhhhhcceeeeecc-cccchhccccccccCCCcchhhh-hhhhhheeeehhhcc---cccccc-cccccCcceE
Confidence 99999777778999999999 55689999999999999997655 478999999998764 378999 9999999999
Q ss_pred EEeCCCCeEEEEEeecc----c-ccccccccccc---cccccccccCC-CC--Cc---cccccccc----cceEEEEEec
Q 000545 1009 TYFAEKNLYPLIVSVPV----L-KPLNQVLSLLI---DQEVGHQIDNH-NL--SS---VDLHRTYT----VEEYEVRILE 1070 (1432)
Q Consensus 1009 ~y~~~~~~~~v~~s~~~----~-~~~~~~~~~~~---d~~~~~~~~~~-~~--~~---~~~~~~~~----~~~~~v~l~d 1070 (1432)
++||+++.++++++... + ..+++.+.... .++...+.+.+ .. .+ .+.....+ ...++|+++|
T Consensus 780 v~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d 859 (1205)
T KOG1898|consen 780 VIHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFD 859 (1205)
T ss_pred EEecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEc
Confidence 99999999999988521 0 00010000000 00000011100 00 00 00001111 1445799999
Q ss_pred cCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCC--cccceeEEEEEEeecCCCCCccEEE
Q 000545 1071 PDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGED--VAARGRVLLFSTGRNADNPQNLVTE 1148 (1432)
Q Consensus 1071 p~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~--~~~~Gri~vf~i~~~~~~~~~~l~~ 1148 (1432)
+.+. .+++.+++.+||...|++.+.|.+ .+..++++||++.+...+ ..++|++|+|++..+.+ +|++
T Consensus 860 ~~s~----~~~~~~~l~~ne~a~~v~~~~fs~---~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~----~lel 928 (1205)
T KOG1898|consen 860 PKSG----KIICLVELGQNEAAFSVCAVDFSS---SEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD----KLEL 928 (1205)
T ss_pred CCCC----ceEEEEeecCCcchhheeeeeecc---CCCceEEEEEeeccccccccccCCCceEEEEEEecCc----eeee
Confidence 8643 678899999999999999999973 234479999999887644 45899999999998643 6999
Q ss_pred EEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccC
Q 000545 1149 VYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGA 1228 (1432)
Q Consensus 1149 v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~ 1228 (1432)
+|++++.|+|.|||+|+|++++|+|+.+++|++++|+|+|++.+..+|.+|++|.+.+.||+|||+++||.|++|++++|
T Consensus 929 lh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 929 LHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred eeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCc------------------cCceEEEEEEEe
Q 000545 1229 QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESW------------------KGQKLLSRAEFH 1290 (1432)
Q Consensus 1229 ~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~------------------~~~kL~~~~~f~ 1290 (1432)
+|+.+|+|..|||||++. ++|+++ ++++|++||+|+++.+|+.++.. ..+|.+...+||
T Consensus 1009 ~l~~fadD~~pR~Vt~~~-~lD~~t--vagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~~g~lN~~~~K~~~i~~f~ 1085 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALE-LLDYDT--VAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWEQGFLNDAPQKVQLISQFF 1085 (1205)
T ss_pred eEEEEeCCCccceeeEEE-EecCCc--eeeccccCcEEEEECCCcchhhhccCCccccceecccccccccHhhhhhhhcc
Confidence 999999999999999999 589999 89999999999999988766522 245788899999
Q ss_pred cCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEEeCCh-HhHHHHHHHHHHHHhcCCCCCCCCccc
Q 000545 1291 VGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDE-LTFRRLQSLQKKLVDSVPHVAGLNPRS 1369 (1432)
Q Consensus 1291 lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~pl~e-~~~~~L~~Lq~~l~~~~~~~~Gl~~~~ 1369 (1432)
+||.++++++.++.++. ++.++|+|+.|+||+++|+.. +++++++.+|++|++..++++|+||.+
T Consensus 1086 v~Dvits~q~~~~i~~a--------------~e~~iy~tl~GtiG~f~p~~s~~d~~Ff~~~e~~~r~e~ppl~GrDH~~ 1151 (1205)
T KOG1898|consen 1086 VGDVITSLQKVSSIPGA--------------RESLIYTTLLGTIGVFAPFLSREDVDFFQHLEMHMRKEYPPLLGRDHLE 1151 (1205)
T ss_pred ccCeeeeceeeeeccCC--------------cceeeeeeccccceEEeecccccchHHHHHHHHhccccCCcccCcchhh
Confidence 99999999999888752 578999999999999999954 578889999999999999999999999
Q ss_pred ccccccCCCCCCCCCCcceeHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Q 000545 1370 FRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGT 1429 (1432)
Q Consensus 1370 ~R~~~~~~~~~~~~~~~~IDGDlle~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~~~~ 1429 (1432)
||+| |.|+|.+|||||||+|+.|+..+|++||+.++++++||.++||++|.++
T Consensus 1152 yRsy-------y~Pvk~VIDGDlceqF~~L~~~~Qe~va~el~~ti~eI~kkledir~~~ 1204 (1205)
T KOG1898|consen 1152 YRSY-------YAPVKKVIDGDLCEQFLRLEENQQEEVAEELDRTIEEISKKLEDIRTRY 1204 (1205)
T ss_pred hhhh-------ccchhhcccHHHHHHHhhCCHHHHHHHHhcccCCHHHHHHHHHHHHhhc
Confidence 9999 6889999999999999999999999999999999999999999999765
No 4
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=6.1e-119 Score=1043.51 Aligned_cols=1225 Identities=19% Similarity=0.278 Sum_probs=919.0
Q ss_pred CccceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCcc
Q 000545 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1432)
Q Consensus 1 ~~~~~~~~~~~pT~V~~s~~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~LeIy~v~~~~~g~~~ 80 (1432)
|+| +|.++...|.+.||+.|+||+.... +|+|.|+|.|+||+.+.+ ++
T Consensus 1 m~~-~y~d~~d~tv~~~~~ag~Ft~s~~~---------------------------~llv~~~Nil~v~~~~~d--~~-- 48 (1319)
T COG5161 1 MNY-LYSDESDWTVTEGCSAGLFTPSRTC---------------------------SLLVYNGNILAVRLWKYD--SG-- 48 (1319)
T ss_pred Ccc-hhhhhhHHHHhhccccceeeccccc---------------------------eEEEEeccEEEEEEeecc--CC--
Confidence 444 4568889999999999999998765 999999999999998743 53
Q ss_pred ccCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEEee
Q 000545 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH 160 (1432)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~~v~~~~l~G~I~~l~~~r~~~~~~~~~~D~Lll~~~~~klsil~~d~~~~~l~t~Slh 160 (1432)
|.++-++.+++.|++|....-..+ ..|.|++.|..||+++++||...+.|.|+|+|
T Consensus 49 --------------------l~l~de~~~~e~~t~I~~~pq~~s----e~~~lll~t~~akis~lrf~sq~n~f~Tislh 104 (1319)
T COG5161 49 --------------------LVLVDEHMLLEKVTQIEKYPQISS----EQDGLLLLTHRAKISLLRFDSQANEFRTISLH 104 (1319)
T ss_pred --------------------eeEchHHhhhhhhhhhhhcccccC----ccceEEEEeccceEEEEEehhhcccceeEEEe
Confidence 999999999999999999866655 69999999999999999999999999999999
Q ss_pred eecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCCC--CCCCCCCCCC---------------CC
Q 000545 161 CFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGS--GLVGDEDTFG---------------SG 223 (1432)
Q Consensus 161 ~~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~y~~~l~ilp~~~~~~--~l~~~~~~~~---------------~~ 223 (1432)
|||.-- .+++=. ....-.-+.-||++.|+ ++.|++...++||+-... ++.+.|.... ..
T Consensus 105 yyeGKf--kgksLv-elak~stle~D~~ssca-LlfneDi~~flpfhvnkndddev~~d~D~~~~~~~~~h~~i~psqgt 180 (1319)
T COG5161 105 YYEGKF--KGKSLV-ELAKFSTLEFDIRSSCA-LLFNEDIGNFLPFHVNKNDDDEVRIDVDLGMFQMSKRHFSIFPSQGT 180 (1319)
T ss_pred eecccc--CCchhh-hhhhhhheeeccCccch-hhhhhhhhhcccccccCCccccccccccccHHHHHHHHhhcCCCCCc
Confidence 999731 111111 11234668899999776 477899999999964322 1211111110 00
Q ss_pred CC---------cccceeccEEEEcccCC--CCceeeEeeecCCCCceEEEEeecCCCcccccccccceeEEEEEEEeecc
Q 000545 224 GG---------FSARIESSHVINLRDLD--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTL 292 (1432)
Q Consensus 224 ~~---------~~~~~~~s~~~~l~~ld--i~~V~D~~FL~gy~~PtlavL~e~~~tw~gr~~~~~dt~~~~~~sLd~~~ 292 (1432)
+. ...--.|++++...||| |+|++|++||++|.+||+|+||+|.++|++....+|+++...+++||++.
T Consensus 181 ntfnkrkrt~~~~kfsaPs~Vl~~seld~~ikniiD~~FL~ny~~PTvallY~Pkl~~~~~~ti~k~p~~~~v~Tldl~~ 260 (1319)
T COG5161 181 NTFNKRKRTLFPGKFSAPSKVLKFSELDGKIKNIIDFVFLENYSIPTVALLYDPKLSLPRKYTILKNPYNAIVFTLDLGA 260 (1319)
T ss_pred cccchhhhhhcCCcccCceeEEEehhhhccccccEEEEeeccCCCceEEEEecccccccceeEeecCceeEEEEEEecCc
Confidence 00 01112579999999998 99999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeccCCcccceEEEecCCCCeEEEEecCeEEEEecCc-cceEEccCCCccCCCCc-ccCCC--CceeEeecee
Q 000545 293 KQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQ-ELPRS--SFSVELDAAH 368 (1432)
Q Consensus 293 k~~~~i~s~~~Lp~~~~~LipvP~p~gGvLVig~n~I~y~~~~~-~~~~~~n~~~~~~~~~~-~~p~~--~~~~~ld~~~ 368 (1432)
+.+.+|-....||+|-+..+|+| -|.|++|.|.++|+|..+ .+++.+|+++.+...+. ..+++ ++.....|..
T Consensus 261 ~~saVI~~~~~lP~d~~~~v~~p---~Gall~g~neli~idstg~~~~I~lNs~~~k~~~~~~v~d~s~~d~n~~~~gtt 337 (1319)
T COG5161 261 GRSAVIDEFLVLPRDFRVTVAGP---VGALLFGSNELILIDSTGSSYTIPLNSMSEKYGGNKIVEDISLSDVNCFSRGTT 337 (1319)
T ss_pred chhhhhHhHhcCCceEEEEEecc---cceEEEecccEEEEecCCcEEEeechhhHHHhcCCceEeecccceeeEeecCce
Confidence 88888877888999999999998 489999999999999988 57899999986655544 33444 4456667776
Q ss_pred EEEeeC-----ceEEEEeCCCCEEEEEEEEcCeeeeeEEEEec-------CCCccccceEEecCCeEEEEeecCCeeEEE
Q 000545 369 ATWLQN-----DVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT-------NPSVLTSDITTIGNSLFFLGSRLGDSLLVQ 436 (1432)
Q Consensus 369 ~~~~~~-----~~~Ll~~~~G~l~~l~l~~dg~~V~~l~i~~~-------~~~~~~s~l~~l~~g~lF~gS~~GDS~L~~ 436 (1432)
.-|+.. .++++.+-+|+.|+|.+.+||+++.++.|..+ -..+-++|+..+++..+|+|+..+||.+++
T Consensus 338 sIwipsSK~~~etl~l~dl~g~~yyl~~~~dgk~iigfdi~~L~~e~dllk~~s~~~Cv~~~n~~l~f~g~g~~ns~vlr 417 (1319)
T COG5161 338 SIWIPSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVSCVGHVNNLLFFGGVGDSNSRVLR 417 (1319)
T ss_pred eeeccCcccccceEEEEecCCCEEEEEEEeccceeeccceeeeeeeccccccCCCCeeEEEcCceEEEEEecCCceEEEE
Confidence 667754 46899999999999999999999988666654 256779999999999999999999999999
Q ss_pred EeeCCCccccCCCCccccCCcccCCcchhhccCCCcchhhcccCcccccccCCCCCCcccccceeEEEEeeeecccCCcc
Q 000545 437 FTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLK 516 (1432)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~ 516 (1432)
|++.........+.| ++..++ -.+++|||.++..|-.+++........+...+.+++++.+.|+|||+
T Consensus 418 ~~~l~~tiEtR~~eG--~~~l~g----------~nDeEmdD~y~apEn~l~~n~~~~v~~~~~p~d~el~~~l~n~gpit 485 (1319)
T COG5161 418 IKSLLPTIETRASEG--VGPLEG----------GNDEEMDDEYSAPENKLFGNKEQEVRRQDEPYDAELFNALSNAGPIT 485 (1319)
T ss_pred ecccCCchhhhhhcC--CCcccC----------CChhhhhhhhcccccccccCcccceeeccCcchhHHhhhhccCCccc
Confidence 998753211111111 111110 00122344333333344443222221222456689999999999999
Q ss_pred cccccccccc---CC---------CccCCCCCCCeEE------------EecCCCCEEEEEEecCCCCCCCCcccccccC
Q 000545 517 DFSYGLRINA---DA---------SATGISKQSNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYD 572 (1432)
Q Consensus 517 D~~vg~~~~~---~~---------~~sG~g~~g~L~~------------~~L~g~~~iWtv~~~~~~~~~~~~~~~~~~~ 572 (1432)
||+||+.... .. ...|++..|.|.+ ..+-++..+|+++.+... ..
T Consensus 486 dfavgkv~v~kglP~pN~g~l~lV~t~G~ds~~~l~V~~ts~~P~I~~~~~fi~~e~vw~~kI~g~l-----------r~ 554 (1319)
T COG5161 486 DFAVGKVDVEKGLPIPNIGLLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQKIRGYL-----------RC 554 (1319)
T ss_pred ceeeeeccceecCCCCCccceeeEEeccCCCcceEEEEeccccceeeehccccchhheeehhcccee-----------hh
Confidence 9999986532 01 1567777788876 234578999999876321 11
Q ss_pred cCcceEEEEeccccceEEEeccceeeeecccccccccceEEEeeecCCcEEEEEecCcEEEEcCCc-ceEEEeCCCCCCC
Q 000545 573 DEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSY-MTQDLSFGPSNSE 651 (1432)
Q Consensus 573 ~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~~~~Tl~ag~l~~~~~ivQVt~~~irli~~~~-~~~~~~~~~~~~~ 651 (1432)
...-.|+++|..+.|.||+.++++.+.. +..|..+..|+.++.++.++++|||||+.++++|.+. ..+.+..
T Consensus 555 ~~~~~~~~ls~~s~S~If~~~e~f~l~~-~g~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~lR~l~~~~F------ 627 (1319)
T COG5161 555 SRALDFYILSRVSDSRIFRWSEEFLLEV-SGEYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDLRMLGRVEF------ 627 (1319)
T ss_pred cceeeEEEeecccccceeeccccceeee-cceeeccccEEEeeeccCcceEEEecchHhhhhcccceeeeeEee------
Confidence 2234799999999999999999988864 4578899999999999888999999999999999875 5555555
Q ss_pred CCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCce-EEeecCccccCCCCceEEEEeeccCCCCccccccccccc
Q 000545 652 SGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT-VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAW 730 (1432)
Q Consensus 652 ~~~~~~~~~I~~asi~d~~vll~~~~g~i~~l~~~~~~~~-l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~ 730 (1432)
+...|++.+++||++++....|.|..|..+..+.+ +.+..+..+. +-.+.+.-+.+.++.
T Consensus 628 -----~~~~V~~~Sv~Dp~ilvv~~~g~i~~f~~~ekn~rL~k~dl~~~l~--d~k~~s~v~~dsN~~------------ 688 (1319)
T COG5161 628 -----ASRAVEARSVRDPLILVVRDSGKILTFYDREKNMRLFKIDLVTCLA--DAKNKSFVLSDSNSL------------ 688 (1319)
T ss_pred -----ceeeeEEEeccCCEEEEEEecCceEEEEehhhhchhccCChHHHHH--hhhhheEeccCcccc------------
Confidence 22248999999999999999999999988766555 3333332221 222222222222110
Q ss_pred ccCCccccccCCCCCCCCCCcEEEEEE-ecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCcc
Q 000545 731 LSTGVGEAIDGADGGPLDQGDIYSVVC-YESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEE 809 (1432)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~ 809 (1432)
|.+.. +....+.-..++.+ ..+..+--..-|.++.+.++++.+...+++. ..+..+
T Consensus 689 ---g~f~i-----g~~~Sq~e~~l~~~~~~~~q~~~~~s~~~D~~~e~dg~dQlte~~~---------~~tynl------ 745 (1319)
T COG5161 689 ---GIFDI-----GKRISQLEPCLVKGLPYAIQFSPEASPAMDLAGEEDGDDQLTEISM---------SLTYNL------ 745 (1319)
T ss_pred ---cceec-----ccchhhhchhhhhcCcccceeccccCcchhhccccccchhhhhHHH---------HHHHhh------
Confidence 00000 00000011122222 2222222223334444554443322221110 000000
Q ss_pred CCCCCcccccccccEEEEEeeeccCCCCccEEEEEeeCCeEEEEEEeecCCCCCCCCCCCCCcccccccccccccccccc
Q 000545 810 GTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRN 889 (1432)
Q Consensus 810 ~~~~~~~~~~~~~~v~~i~~~~~g~~~~~~~L~vgl~~G~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 889 (1432)
..+.-..+.+.++++..+|.+-+.+||+.....|+++.|+.+++...
T Consensus 746 -----~d~~f~lpsi~~~mVa~lg~D~keeyLf~~s~~~EI~~yk~~l~r~~---------------------------- 792 (1319)
T COG5161 746 -----IDMLFRLPSIGNYMVAYLGLDLKEEYLFDNSLSSEIVFYKTHLPRHV---------------------------- 792 (1319)
T ss_pred -----hhhhccChhhhhhhhHhhcccccchheehhhcCceEEEEeecccccc----------------------------
Confidence 00011234567788888998889999999999999999998643311
Q ss_pred eeEEecc---CCccCC-CCCC---CCCCccceE-EeeccCCceEEEEeCCCceEEEEe-CCceEEeeccCCCceEEEeec
Q 000545 890 LRFSRTP---LDAYTR-EETP---HGAPCQRIT-IFKNISGHQGFFLSGSRPCWCMVF-RERLRVHPQLCDGSIVAFTVL 960 (1432)
Q Consensus 890 ~rF~k~~---~~~~~~-~~~~---~~lg~~~v~-~f~~~~g~~~Vf~~g~rP~~i~~~-~~~l~~~p~~~~~~v~~~~~f 960 (1432)
+|.+-- ..+.++ ++.. ....-.++. .|....|++.+|++|..|+++.+. ++...+.|.. .-|+.+++||
T Consensus 793 -~f~~nvTRndlAitGaPdna~~Ka~sSV~ri~m~f~~~vghs~~fvTg~~pfl~~s~~~s~~k~f~~g-NIPlvsv~p~ 870 (1319)
T COG5161 793 -SFNLNVTRNDLAITGAPDNADIKAFSSVGRIDMVFIKAVGHSFMFVTGKGPFLCRSRYTSSSKAFHRG-NIPLVSVIPL 870 (1319)
T ss_pred -hhhhhcchhhhhccCCCcchhhhhcccccceeEEEeeccCeEEEEEcCCccEEEEEeccCCcceeecC-CCceeeeeec
Confidence 232210 000011 1000 001122333 466667899999999999998875 5556666663 4689999999
Q ss_pred cCCCCCceEEEEEecCeEEEEEcCCCCccC-CCcceEEEeeCCCcccEEEEeCCCCeEEEEEeecccccccccccccccc
Q 000545 961 HNVNCNHGFIYVTSQGILKICQLPSGSTYD-NYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQ 1039 (1432)
Q Consensus 961 ~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d-~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~ 1039 (1432)
+. .|.++++.....|+|++.....|+ +.||+++ +|++.|..+++||+..+.|+|....+ ..+. +..+|+
T Consensus 871 s~----rgy~~Vd~~~~vr~~~~~~dn~y~gnK~p~k~-~~~~Ktlqklvyh~~~~~~~Vgsc~~----~~f~-~~gEdg 940 (1319)
T COG5161 871 SK----RGYLMVDNVLGVRASQYVFDNGYVGNKNPVKR-TPKHKTLQKLVYHCAGRYMVVGSCEE----AGFS-PKGEDG 940 (1319)
T ss_pred cc----ccEEEEecccceeEEEEEeccceecccCceee-ccccccccceeeeccceEEEEEeeee----cCcc-ccCCCC
Confidence 85 689999988899999998776665 8899999 99999999999999999999986632 2221 122333
Q ss_pred cccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEee-ecCCCCcceEEEEEeee
Q 000545 1040 EVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLF-NTTTKENETLLAIGTAY 1118 (1432)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~-~~~~~~~~~~lvVGT~~ 1118 (1432)
|.....+ +..+.+...++.+-|++|+ +|+++|+|+|++||.++.|+.+.++ ++.++.+++||+|||++
T Consensus 941 E~~i~~D-------~Nvphaeg~~~~vdL~spk----sw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~ 1009 (1319)
T COG5161 941 ESGIPVD-------TNVPHAEGYRFYVDLYSPK----SWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTF 1009 (1319)
T ss_pred CccCccC-------CCCcccccceeeEEEecCc----ceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEeee
Confidence 3222211 1123344578899999984 8999999999999999999999998 45677899999999999
Q ss_pred ecCCCcccceeEEEEEEee---cCCCCCc--cEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCC-eeeeEEee
Q 000545 1119 VQGEDVAARGRVLLFSTGR---NADNPQN--LVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGT-ELNGIAFY 1192 (1432)
Q Consensus 1119 ~~~e~~~~~Gri~vf~i~~---~~~~~~~--~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~-~L~~~a~~ 1192 (1432)
..|||.|.+||+++|+|++ +|++|.+ |||++..+|++|.|..+|+++|+++.|.||||+|+++++. .+.+++|+
T Consensus 1010 ~~gED~p~rG~~hv~eII~VVP~pg~P~t~~KLK~~~~Ee~kGTV~~vcEV~G~~~~~qgqKV~Vr~i~~~~~iipV~F~ 1089 (1319)
T COG5161 1010 IEGEDRPARGRLHVLEIISVVPSPGSPFTDCKLKVLGIEETKGTVVRVCEVRGKIALCQGQKVMVRKIDRSSGIIPVGFY 1089 (1319)
T ss_pred cccCccCCcCceEEEEEEEecCCCCCCcccceeeEEehhhcccEEEEEEEEccEEEeccCcEEEEEEecccCCcceeEEE
Confidence 9999999999999999976 6666643 7999999999999999999999999999999999999865 59999999
Q ss_pred cCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCC
Q 000545 1193 DAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1193 ~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p 1272 (1432)
|. ++|++++++.+|++++||+|++++|+.|++++++|+.+++....+.+++.+||+.++.|+|+++|..|||+++.|+|
T Consensus 1090 Dl-~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da~gnih~l~Y~P 1168 (1319)
T COG5161 1090 DL-HIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDAKGNIHGLTYSP 1168 (1319)
T ss_pred ee-eeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcCCCCEEEEecCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEEeCChHhHHHHHHHH
Q 000545 1273 KMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQ 1352 (1432)
Q Consensus 1273 ~~~~s~~~~kL~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~pl~e~~~~~L~~Lq 1352 (1432)
++|+|+.|+||+.++.||+|...++|.- .|...+- |.......+.+|+-++|++-.++|++++.||||..+|
T Consensus 1169 ~np~S~sG~RLV~rssFtlhs~~~~m~l---lPrn~ef-----G~~~~~~f~~v~~~sdG~l~~vvpisd~~YrrL~~IQ 1240 (1319)
T COG5161 1169 NNPISMSGARLVKRSSFTLHSAEIKMNL---LPRNSEF-----GAGFKKNFIMVYSRSDGMLIHVVPISDAHYRRLLGIQ 1240 (1319)
T ss_pred CCccccCcceeEeeccccccchhhhhhh---ccchhhh-----CCCCCCceeEEEEccCCcEEEEeccCHHHHHHHHHHH
Confidence 9999999999999999999999999864 3432211 2223346789999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCcccccccccCCCCCCCCCCcceeHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 000545 1353 KKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLA 1426 (1432)
Q Consensus 1353 ~~l~~~~~~~~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlle~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~ 1426 (1432)
+++...+.+++||||+.||-...-. .+..+.|.++|+.+|..|-.|+...|+++|++.|+-...++.+|-++.
T Consensus 1241 ~~i~~r~~~vgGLNpr~yRL~~d~~-~~~~s~r~~ld~~ii~~F~y~~~~~r~sva~kaGr~~~~e~~D~i~~~ 1313 (1319)
T COG5161 1241 TAIMARLKSVGGLNPRDYRLNSDIH-LHSLSLRSPLDLHIINLFSYFDMSTRESVASKAGRIDRKEISDMIASL 1313 (1319)
T ss_pred HHHHHHHHhhcCCChhhhhhccCHH-HhcCCcccchhhhhhhhhhhcchhhhhHHHhhcCCchHHHHHHHHHHH
Confidence 9999999999999999999653222 224577999999999999999999999999999987654444444443
No 5
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=100.00 E-value=7.2e-55 Score=544.34 Aligned_cols=452 Identities=28% Similarity=0.444 Sum_probs=301.8
Q ss_pred cEEEEEeccceEEEEEEeCCCCCeeEEEeeeecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCC
Q 000545 131 DSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGG 210 (1432)
Q Consensus 131 D~Lll~~~~~klsil~~d~~~~~l~t~Slh~~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~y~~~l~ilp~~~~~ 210 (1432)
|+|+|+||++++++|+|+++++++...++|++++ +.+.|.|+..+|++++|||+|||+|+++|++.+.|+|+++..
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~----~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~ 76 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEP----LSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSL 76 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE-------SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS--
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEe----cCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccc
Confidence 8999999999999999999988865446777644 678999999999999999999999999999999999998721
Q ss_pred CCCCCCCCCCCCCCCcccceeccEEEEcccCCCCceeeEeeec---CCCCceEEEEeecCCCcccccccccceeEE--EE
Q 000545 211 SGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVH---GYIEPVMVILHERELTWAGRVSWKHHTCMI--SA 285 (1432)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~s~~~~l~~ldi~~V~D~~FL~---gy~~PtlavL~e~~~tw~gr~~~~~dt~~~--~~ 285 (1432)
.. .... ...+...+.+ ..+|+||+||| ||++|+||+||.+.+.|. +..++. ..
T Consensus 77 ~~------~~~~--------~~~~~~pi~s--~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~------~~~~y~w~~~ 134 (504)
T PF10433_consen 77 DS------DIAF--------SPHINSPIKS--EGNILDMCFLHPSVGYDNPTLAILYVDSQRRT------HLVTYEWSLD 134 (504)
T ss_dssp --------T-TT-----------EEEE--S---SEEEEEEEES---S-SS-EEEEEEEETT-EE------EEEEEE----
T ss_pred cc------cccc--------cccccccccC--CceEEEEEEEecccCCCCceEEEEEEEecccc------eeEEEeeecc
Confidence 00 0001 1112222211 34999999999 999999999999965321 112211 22
Q ss_pred EEEeecccccc-e--eeEeccCCcccceEEEecCCCCeEEEEecCeEEEEecCccc----eEEccCCCccCCCCcccCCC
Q 000545 286 LSISTTLKQHP-L--IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASC----ALALNNYAVSLDSSQELPRS 358 (1432)
Q Consensus 286 ~sLd~~~k~~~-~--i~s~~~Lp~~~~~LipvP~p~gGvLVig~n~I~y~~~~~~~----~~~~n~~~~~~~~~~~~p~~ 358 (1432)
..++...+... . +|....+| ++|||||.|.||+||++++.|+|.++.... ...++.. ...+.
T Consensus 135 ~~l~~~~~~~~~~~~l~~~~~~p---~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~--------~~~~~ 203 (504)
T PF10433_consen 135 DGLNHVISKSTLPIRLPNEDELP---SFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSP--------PSSSS 203 (504)
T ss_dssp ----EETTTTEEEE--EEEE-TT---EEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H---------HHHT
T ss_pred cccceeeeeccccccccccCCCc---cEEEEcCCCCcEEEEECCEEEEEecccccccccccccccCC--------ccCCC
Confidence 23333333322 1 45556666 999999999999999999999999764321 1111100 00012
Q ss_pred CceeEeec---eeEEEeeCceEEEEeCCCCEEEEEEEEcCeeeeeEEEEecCC-CccccceEEecCC--eEEEEeecCCe
Q 000545 359 SFSVELDA---AHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNP-SVLTSDITTIGNS--LFFLGSRLGDS 432 (1432)
Q Consensus 359 ~~~~~ld~---~~~~~~~~~~~Ll~~~~G~l~~l~l~~dg~~V~~l~i~~~~~-~~~~s~l~~l~~g--~lF~gS~~GDS 432 (1432)
.++..... ........+++||++++|+||+|.+..+++ +++++++|+ .++|++++++++| +||+||++|||
T Consensus 204 ~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~---~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds 280 (504)
T PF10433_consen 204 SLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG---SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDS 280 (504)
T ss_dssp S-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE---EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-E
T ss_pred ceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC---eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCc
Confidence 22221111 111234457899999999999999999887 899999999 9999999999999 99999999999
Q ss_pred eEEEEeeCCCccccCCCCccccCCcccCCcchhhccCCCcchhhcccCcccccccCCCCCCcccccceeEEEEeeeeccc
Q 000545 433 LLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNI 512 (1432)
Q Consensus 433 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~Ni 512 (1432)
+|||+.. .+++++|+++||
T Consensus 281 ~l~~~~~-------------------------------------------------------------~~l~~~~~~~N~ 299 (504)
T PF10433_consen 281 QLLQISL-------------------------------------------------------------SNLEVLDSLPNW 299 (504)
T ss_dssp EEEEEES-------------------------------------------------------------ESEEEEEEE---
T ss_pred EEEEEeC-------------------------------------------------------------CCcEEEEeccCc
Confidence 9999963 247999999999
Q ss_pred CCccccccccccccC-C---------CccCCCCCCCeEE--------------EecCCCCEEEEEEecCCCCCCCCcccc
Q 000545 513 GPLKDFSYGLRINAD-A---------SATGISKQSNYEL--------------VELPGCKGIWTVYHKSSRGHNADSSRM 568 (1432)
Q Consensus 513 gPI~D~~vg~~~~~~-~---------~~sG~g~~g~L~~--------------~~L~g~~~iWtv~~~~~~~~~~~~~~~ 568 (1432)
|||+||++++..... . +|||.|++|+|++ .++||+++||+++...
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~----------- 368 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSS----------- 368 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSS-----------
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecC-----------
Confidence 999999998764321 1 3999999999987 3688999999998641
Q ss_pred cccCcCcceEEEEeccccceEEEec-----cceeeeecccccccccceEEEeeecCCcEEEEEecCcEEEEcC--CcceE
Q 000545 569 AAYDDEYHAYLIISLEARTMVLETA-----DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDG--SYMTQ 641 (1432)
Q Consensus 569 ~~~~~~~~~yLvlS~~~~T~Vl~~g-----~~~eEv~~~~gF~~~~~Tl~ag~l~~~~~ivQVt~~~irli~~--~~~~~ 641 (1432)
+. |.|||+|++++|+||+++ ++++|+++. ||.++++||+||++ +++++||||+++||+++. .+..+
T Consensus 369 ----~~-~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~-~~~~ivQVt~~~i~l~~~~~~~~~~ 441 (504)
T PF10433_consen 369 ----SD-HSYLVLSFPNETRVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNV-GDGRIVQVTPKGIRLIDLEDGKLTQ 441 (504)
T ss_dssp ----SS-BSEEEEEESSEEEEEEES----SSEEEEE----TS-SSS-EEEEEEE-TTTEEEEEESSEEEEEESSSTSEEE
T ss_pred ----CC-ceEEEEEcCCceEEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEc-CCCeEEEEecCeEEEEECCCCeEEE
Confidence 12 899999999999999984 567777444 99999999999999 689999999999999973 35778
Q ss_pred EEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCccccCCCCceEEEEe
Q 000545 642 DLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTL 712 (1432)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~I~~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l 712 (1432)
+|.++ .+..|++|+++++|++|+++++++.+|+++......+......+ ..+.+|+|+++
T Consensus 442 ~w~~~----------~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~eis~l~i 501 (504)
T PF10433_consen 442 EWKPP----------AGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETIL-ELDNEISCLSI 501 (504)
T ss_dssp EEE-T----------TS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----E-E-SS-EEEEE-
T ss_pred EEeCC----------CCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccc-cCCCceEEEEe
Confidence 89884 56789999999999999999999999998865433332221111 13788999876
No 6
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=100.00 E-value=6.9e-52 Score=488.81 Aligned_cols=317 Identities=33% Similarity=0.610 Sum_probs=259.7
Q ss_pred eEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccc-eeEEEEEEeecCCC
Q 000545 1063 EYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADN 1141 (1432)
Q Consensus 1063 ~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~-Gri~vf~i~~~~~~ 1141 (1432)
+++|+++|| .+|+++++|+|+++|+++|++.++|....+ +.++||||||++..+|+..++ |||++|++.+.+.
T Consensus 1 ~s~i~l~d~----~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~-~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~- 74 (321)
T PF03178_consen 1 ASSIRLVDP----TTFEVLDSFELEPNEHVTSLCSVKLKGDST-GKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE- 74 (321)
T ss_dssp --EEEEEET----TTSSEEEEEEEETTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred CcEEEEEeC----CCCeEEEEEECCCCceEEEEEEEEEcCccc-cccCEEEEEecccccccccccCcEEEEEEEEcccc-
Confidence 368999998 589999999999999999999999974222 358999999999999987666 9999999987521
Q ss_pred CCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCe-eeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEE
Q 000545 1142 PQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTE-LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYF 1220 (1432)
Q Consensus 1142 ~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~-L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~l 1220 (1432)
...+|+++++++++|||+||+.++|+|++|+|++|++|+|+.++ |.++|+++. +.++++|.+.+|+|+|||+++|+++
T Consensus 75 ~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 75 NNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp ---EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEEETTEEEEEESSSSEEE
T ss_pred cceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecc-eEEEEEEeccccEEEEEEcccCEEE
Confidence 12479999999999999999999999999999999999999888 999999999 9999999999999999999999999
Q ss_pred EEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCc-eEEEEEEEecCcceeEEE
Q 000545 1221 LSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQ-KLLSRAEFHVGAHVTKFL 1299 (1432)
Q Consensus 1221 l~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~-kL~~~~~f~lg~~vt~~~ 1299 (1432)
++|++++++|.++|||+.++|+++++|+.|++. ++++|++|||++|+++|+..++.+++ +|+..++||+|+.|++++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~--~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDT--IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE--EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcE--EEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 999998899999999999999999998668865 99999999999999999998888888 999999999999999999
Q ss_pred EEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEEe-CChHhHHHHHHHHHHHHhcCCCCCCCCcccccccccCCC
Q 000545 1300 RLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAP-LDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGK 1378 (1432)
Q Consensus 1300 ~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~p-l~e~~~~~L~~Lq~~l~~~~~~~~Gl~~~~~R~~~~~~~ 1378 (1432)
++++.+...+ .+....+.++|+|.+|+||+++| +++++|++|+.||+.|.+.+++++|++|++||++++. +
T Consensus 232 ~~~l~~~~~~-------~~~~~~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~~l~~~~~~~~gl~~~~~R~~~~~-~ 303 (321)
T PF03178_consen 232 RGSLIPRSGS-------SESPNRPQILYGTVDGSIGVLIPFLSEEEYRFLQALQNNLRKHIPSLGGLNPRSFRSYKNP-R 303 (321)
T ss_dssp E--SS--SSS-------S-TTEEEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHHHHHHHS--TTS--HHHHTSEEES-E
T ss_pred EEEeeecCCC-------CcccccceEEEEecCCEEEEEEecCCHHHHHHHHHHHHHHHhhCCCCccCChHHhccccCc-c
Confidence 9987773101 01112578999999999999999 8999999999999999999999999999999999754 2
Q ss_pred CCCCCCCcceeHHHHHHHcC
Q 000545 1379 AHRPGPDSIVDCELLSHYEM 1398 (1432)
Q Consensus 1379 ~~~~~~~~~IDGDlle~fl~ 1398 (1432)
. ..+++||||||||+|++
T Consensus 304 ~--~~~~~~iDgdll~~fl~ 321 (321)
T PF03178_consen 304 M--KRSKGFIDGDLLEQFLE 321 (321)
T ss_dssp E--E--BSEEEHHHHHGGGG
T ss_pred c--cCCCccCcHHHHHHhhC
Confidence 1 12799999999999985
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.45 E-value=0.0054 Score=72.30 Aligned_cols=141 Identities=23% Similarity=0.321 Sum_probs=99.1
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cC-eEEEE-eCCeEEEEEccCC
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QG-HLLIA-SGPKIILHKWTGT 1184 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~-~g-~Ll~~-vg~~l~v~~~~~~ 1184 (1432)
.+.+++||- ..|.+++|.+... ...+..-.++.+|+|+++.-- +| ||+++ ...|+.+|+...+
T Consensus 454 ~~~~vaVGG---------~Dgkvhvysl~g~-----~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 454 DGSEVAVGG---------QDGKVHVYSLSGD-----ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred CCCEEEEec---------ccceEEEEEecCC-----cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 468899996 3688999999752 123444557789999999843 45 45444 4579999999877
Q ss_pred ee--eeEEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEe
Q 000545 1185 EL--NGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD 1260 (1432)
Q Consensus 1185 ~L--~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D 1260 (1432)
+. .+-+|... -|.++.- ...++.-|-+-..|.++..+. +.+- ..+++-++..|+.+.| +|+++ ++.+-
T Consensus 520 ~~~~~~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~k-P~~~-i~iknAH~~gVn~v~w-lde~t--vvSsG 591 (603)
T KOG0318|consen 520 EVKTNRWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKK-PAKH-IIIKNAHLGGVNSVAW-LDEST--VVSSG 591 (603)
T ss_pred ceecceeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccC-hhhh-eEeccccccCceeEEE-ecCce--EEecc
Confidence 64 33334433 4444443 344777888888888877653 3333 7889999999999997 89999 78888
Q ss_pred cCCcEEEEee
Q 000545 1261 EQKNIQIFYY 1270 (1432)
Q Consensus 1261 ~~gNl~vl~~ 1270 (1432)
.+.||.+...
T Consensus 592 ~Da~iK~W~v 601 (603)
T KOG0318|consen 592 QDANIKVWNV 601 (603)
T ss_pred CcceeEEecc
Confidence 8888877653
No 8
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.16 Score=62.26 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=101.4
Q ss_pred eeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee-cCceE
Q 000545 1081 RATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL-KGAIS 1159 (1432)
Q Consensus 1081 ~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~-~g~V~ 1159 (1432)
+-.+.+.+.|.+.|.++. .....|++||. -|+.+|++.+++. .+.+.+-.... .-++.
T Consensus 374 Llkl~~k~~~nIs~~aiS--------Pdg~~Ia~st~----------~~~~iy~L~~~~~---vk~~~v~~~~~~~~~a~ 432 (691)
T KOG2048|consen 374 LLKLFTKEKENISCAAIS--------PDGNLIAISTV----------SRTKIYRLQPDPN---VKVINVDDVPLALLDAS 432 (691)
T ss_pred heeeecCCccceeeeccC--------CCCCEEEEeec----------cceEEEEeccCcc---eeEEEeccchhhhccce
Confidence 344566778888887653 24589999994 4677888876531 11222211111 11222
Q ss_pred EEc--cccCeEEEEe-C-CeEEEEEccC---CeeeeEEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEecccCEE
Q 000545 1160 ALA--SLQGHLLIAS-G-PKIILHKWTG---TELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQL 1230 (1432)
Q Consensus 1160 al~--~~~g~Ll~~v-g-~~l~v~~~~~---~~L~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l 1230 (1432)
++. .-+.+++.+. + ..+.+++++. ++|...+..-. ..+|..|.+ .||+|++.+-...|+++ +-+..+.
T Consensus 433 ~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~-~~~I~~l~~SsdG~yiaa~~t~g~I~v~--nl~~~~~ 509 (691)
T KOG2048|consen 433 AISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAK-CPSISRLVVSSDGNYIAAISTRGQIFVY--NLETLES 509 (691)
T ss_pred eeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccC-CCcceeEEEcCCCCEEEEEeccceEEEE--Eccccee
Confidence 222 1134444443 3 2445555542 45665555433 345665554 79999999976666665 6667777
Q ss_pred EEeeeccCCccEEEEEEE-EcCCeeEEEEEecCCcEEEEeeC
Q 000545 1231 NLLAKDFGSLDCFATEFL-IDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1231 ~~~arD~~~~~vta~~fl-~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
..+.-+.. ..||++.|. -+.++ +++++.++-++-|..+
T Consensus 510 ~~l~~rln-~~vTa~~~~~~~~~~--lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 510 HLLKVRLN-IDVTAAAFSPFVRNR--LVVATSNNQVFEFDIE 548 (691)
T ss_pred ecchhccC-cceeeeeccccccCc--EEEEecCCeEEEEecc
Confidence 77877776 899999986 46677 7889999999988763
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.22 E-value=0.58 Score=55.62 Aligned_cols=163 Identities=10% Similarity=0.085 Sum_probs=93.6
Q ss_pred cceeEEEEEEeecCCCCCccEE----EEEEEeecCceEEEcc-ccC-eEEEEe--CCeEEEEEccC--CeeeeEEeecCC
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVT----EVYSKELKGAISALAS-LQG-HLLIAS--GPKIILHKWTG--TELNGIAFYDAP 1195 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~----~v~~~~~~g~V~al~~-~~g-~Ll~~v--g~~l~v~~~~~--~~L~~~a~~~~~ 1195 (1432)
..++|.+|++.... .++ .....+....+..+.- =+| +|+++- .++|.+|+++. .++.....+..+
T Consensus 146 ~~~~v~v~d~~~~g-----~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 146 KEDRIRLFTLSDDG-----HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred CCCEEEEEEECCCC-----cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 36899999996421 121 1111122223333331 234 554553 58999999974 344333222211
Q ss_pred ------CeeEEE--EEEeCCEEEEEec-cccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEE
Q 000545 1196 ------PLYVVS--LNIVKNFILLGDI-HKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQ 1266 (1432)
Q Consensus 1196 ------~~~i~s--l~~~~n~IlvgD~-~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~ 1266 (1432)
+.+... ++..+.++++++. .++|.++.++.+...+..++.-....+..++.|-.|+..| +++...++.|.
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l-~va~~~~~~v~ 299 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYL-IAAGQKSHHIS 299 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEE-EEEEccCCcEE
Confidence 223223 3345679999986 5789998887666666655543322223344544567775 44444588999
Q ss_pred EEeeCCCCCCCccCceEEEEEEEecCcceeEEEE
Q 000545 1267 IFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR 1300 (1432)
Q Consensus 1267 vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~ 1300 (1432)
+|+.+++. ..|.....+.+|..++++.-
T Consensus 300 v~~~~~~~------g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 300 VYEIDGET------GLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEEcCCC------CcEEEccccccCCCceEEEE
Confidence 99876543 24677778888888888764
No 10
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.82 E-value=2.6 Score=53.40 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=91.1
Q ss_pred eeeEECCCC------CceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee
Q 000545 1081 RATIPMQSS------ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL 1154 (1432)
Q Consensus 1081 ~~~~~l~~~------E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~ 1154 (1432)
+..|.|+++ -.++|+++- . =..|.+||+ ++|-|-+|.+-..-- +-..--+...
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs-~-------CGNF~~IG~---------S~G~Id~fNmQSGi~----r~sf~~~~ah 492 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVS-F-------CGNFVFIGY---------SKGTIDRFNMQSGIH----RKSFGDSPAH 492 (910)
T ss_pred cccEEecCccccccCcceEEEEEe-c-------cCceEEEec---------cCCeEEEEEcccCee----ecccccCccc
Confidence 456666666 455555532 1 136899998 589999998864211 0011112357
Q ss_pred cCceEEEcc-ccCeEEEEeC--CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEE
Q 000545 1155 KGAISALAS-LQGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLN 1231 (1432)
Q Consensus 1155 ~g~V~al~~-~~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~ 1231 (1432)
+++|++++. .-++++++.| .-+..|+++++.|...-....-...++...+.+=++++.|- -||.+ |+....+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd-f~I~v--vD~~t~k-- 567 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD-FSIRV--VDVVTRK-- 567 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc-eeEEE--EEchhhh--
Confidence 899999873 3456666655 46778999887654432222202222222222223332222 23333 3443333
Q ss_pred Eeeecc--CCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1232 LLAKDF--GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1232 ~~arD~--~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
+.|-+ +...+++..|-.|+.= ++.++.++.|+++..+
T Consensus 568 -vvR~f~gh~nritd~~FS~DgrW--lisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 568 -VVREFWGHGNRITDMTFSPDGRW--LISASMDSTIRTWDLP 606 (910)
T ss_pred -hhHHhhccccceeeeEeCCCCcE--EEEeecCCcEEEEecc
Confidence 33443 3456889998555554 7889999999998864
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.44 E-value=2.2 Score=47.85 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=80.7
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC--eEEEEe-CCeEEEEEccCCe
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG--HLLIAS-GPKIILHKWTGTE 1185 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g--~Ll~~v-g~~l~v~~~~~~~ 1185 (1432)
..++++|+ ..|.|++|++... ..+..+. ..+++|++++-..+ +|+++. ...|.+|++...+
T Consensus 147 ~~~l~~~~---------~~~~i~i~d~~~~-----~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 147 GTFVASSS---------QDGTIKLWDLRTG-----KCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred CCEEEEEc---------CCCcEEEEEcccc-----ccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 46777765 3688999998632 1122211 34568888875433 566555 5789999998654
Q ss_pred eeeEEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCC
Q 000545 1186 LNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQK 1263 (1432)
Q Consensus 1186 L~~~a~~~~~~~~i~sl~~~--~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~g 1263 (1432)
+...-. .. ...+.++... +.+++.++.-..+.++.... ...+..+. .....++++.|--++.. ++++..+|
T Consensus 211 ~~~~~~-~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~--l~~~~~d~ 283 (289)
T cd00200 211 CLGTLR-GH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-GECVQTLS--GHTNSVTSLAWSPDGKR--LASGSADG 283 (289)
T ss_pred eecchh-hc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC-ceeEEEcc--ccCCcEEEEEECCCCCE--EEEecCCC
Confidence 433221 22 3355555554 46777777677777765542 12222222 33446888886434344 67788888
Q ss_pred cEEEE
Q 000545 1264 NIQIF 1268 (1432)
Q Consensus 1264 Nl~vl 1268 (1432)
.+.++
T Consensus 284 ~i~iw 288 (289)
T cd00200 284 TIRIW 288 (289)
T ss_pred eEEec
Confidence 88776
No 12
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.39 E-value=0.41 Score=56.81 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=108.2
Q ss_pred cCceEEEcccc---------CeEEEEeC-----------CeEEEEEccCC-----eeeeEEeecCCCeeEEEEEEeCCEE
Q 000545 1155 KGAISALASLQ---------GHLLIASG-----------PKIILHKWTGT-----ELNGIAFYDAPPLYVVSLNIVKNFI 1209 (1432)
Q Consensus 1155 ~g~V~al~~~~---------g~Ll~~vg-----------~~l~v~~~~~~-----~L~~~a~~~~~~~~i~sl~~~~n~I 1209 (1432)
.-.|++++.++ .+|++|.+ .+|++|++.+. +|..++..+. +..|++|...++++
T Consensus 23 ~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~V~ai~~~~~~l 101 (321)
T PF03178_consen 23 NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV-KGPVTAICSFNGRL 101 (321)
T ss_dssp TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE-SS-EEEEEEETTEE
T ss_pred CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee-cCcceEhhhhCCEE
Confidence 44566666442 36778876 66999999883 7888887777 77899999999996
Q ss_pred EEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEE
Q 000545 1210 LLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEF 1289 (1432)
Q Consensus 1210 lvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f 1289 (1432)
++|- -..+.+++++... +|...|.=..+..++++.. .++. ++++|....+++++|+++ +++|...+.=
T Consensus 102 v~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~--~~~~--I~vgD~~~sv~~~~~~~~------~~~l~~va~d 169 (321)
T PF03178_consen 102 VVAV-GNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSV--FKNY--ILVGDAMKSVSLLRYDEE------NNKLILVARD 169 (321)
T ss_dssp EEEE-TTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEE--ETTE--EEEEESSSSEEEEEEETT------TE-EEEEEEE
T ss_pred EEee-cCEEEEEEccCcc-cchhhheecceEEEEEEec--cccE--EEEEEcccCEEEEEEEcc------CCEEEEEEec
Confidence 6664 4788888887544 5888888877778888873 4566 899999999999999873 3567776654
Q ss_pred ecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEEeC
Q 000545 1290 HVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPL 1340 (1432)
Q Consensus 1290 ~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~pl 1340 (1432)
.-...+++..- ... ...++.+..+|.|..+..-
T Consensus 170 ~~~~~v~~~~~---l~d---------------~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 170 YQPRWVTAAEF---LVD---------------EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SS-BEEEEEEE---E-S---------------SSEEEEEETTSEEEEEEE-
T ss_pred CCCccEEEEEE---ecC---------------CcEEEEEcCCCeEEEEEEC
Confidence 44444554432 211 1268888888888777654
No 13
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.23 E-value=0.19 Score=56.30 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=97.6
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccE-EEEEEEeecCceEEEccc-cCeEEEE--eCCeEEEEEccC
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLV-TEVYSKELKGAISALASL-QGHLLIA--SGPKIILHKWTG 1183 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l-~~v~~~~~~g~V~al~~~-~g~Ll~~--vg~~l~v~~~~~ 1183 (1432)
-..|++||++ .||+.+|++..- +. +.+ ...--||++||-- .|++|.. -..++.+|++-+
T Consensus 34 ~G~~lAvGc~---------nG~vvI~D~~T~------~iar~l--saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 34 WGDYLAVGCA---------NGRVVIYDFDTF------RIARML--SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred Ccceeeeecc---------CCcEEEEEcccc------chhhhh--hccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 4589999994 899999999751 11 111 1133578888843 5654433 347899999987
Q ss_pred CeeeeEEeecCCCeeEEEEEEeC-CEEEEEeccccEEEEEEecccCEEEEeeecc-CCccEE-EEEEEEcCCeeEEEEEe
Q 000545 1184 TELNGIAFYDAPPLYVVSLNIVK-NFILLGDIHKSIYFLSWKEQGAQLNLLAKDF-GSLDCF-ATEFLIDGSTLSLVVSD 1260 (1432)
Q Consensus 1184 ~~L~~~a~~~~~~~~i~sl~~~~-n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~-~~~~vt-a~~fl~d~~~l~~l~~D 1260 (1432)
..++..-.++. |..-.+....+ |..++.=+.+|-.+..|.. .+-..++.|. .....+ ++.+ .|..-=+|+++-
T Consensus 97 gs~l~rirf~s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~-fdr~g~yIitGt 172 (405)
T KOG1273|consen 97 GSPLKRIRFDS-PVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGV-FDRRGKYIITGT 172 (405)
T ss_pred CCceeEEEccC-ccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccccccccccc-ccCCCCEEEEec
Confidence 76555545555 56655666655 6777766777888888764 3333444432 223333 3332 232222388999
Q ss_pred cCCcEEEEeeCCCCCCCccCceEEEEEEEecCc
Q 000545 1261 EQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGA 1293 (1432)
Q Consensus 1261 ~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~ 1293 (1432)
..|-|.++.. ..|++++.|.+-.
T Consensus 173 sKGkllv~~a----------~t~e~vas~rits 195 (405)
T KOG1273|consen 173 SKGKLLVYDA----------ETLECVASFRITS 195 (405)
T ss_pred CcceEEEEec----------chheeeeeeeech
Confidence 9999999862 3567888888765
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.10 E-value=4.4 Score=48.07 Aligned_cols=255 Identities=12% Similarity=0.091 Sum_probs=134.0
Q ss_pred EEEEEe--cCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEEEeeccccccccccccccccccccccc
Q 000545 969 FIYVTS--QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQID 1046 (1432)
Q Consensus 969 ~i~~~~--~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~ 1046 (1432)
++|++. ++++++..++...++ -.++. ++.+..|..++++|+.+.+++++.. .
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l---~~~~~-~~~~~~~~~l~~spd~~~lyv~~~~-----~----------------- 56 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGAL---TLLQV-VDVPGQVQPMVISPDKRHLYVGVRP-----E----------------- 56 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCce---eeeeE-EecCCCCccEEECCCCCEEEEEECC-----C-----------------
Confidence 455553 456777777532221 24566 8888899999999998877775321 0
Q ss_pred CCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCccc
Q 000545 1047 NHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAA 1126 (1432)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~ 1126 (1432)
..|..++... +..++.+..+.... .+ +-+.+. ....++.++.- .
T Consensus 57 -----------------~~i~~~~~~~-~g~l~~~~~~~~~~--~p---~~i~~~-----~~g~~l~v~~~--------~ 100 (330)
T PRK11028 57 -----------------FRVLSYRIAD-DGALTFAAESPLPG--SP---THISTD-----HQGRFLFSASY--------N 100 (330)
T ss_pred -----------------CcEEEEEECC-CCceEEeeeecCCC--Cc---eEEEEC-----CCCCEEEEEEc--------C
Confidence 0111111110 12333333333321 12 223342 23345555531 2
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccC-eEEE-EeC-CeEEEEEccC-CeeeeE----EeecCCCe
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQG-HLLI-ASG-PKIILHKWTG-TELNGI----AFYDAPPL 1197 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~-~~g-~Ll~-~vg-~~l~v~~~~~-~~L~~~----a~~~~~~~ 1197 (1432)
.|+|.+|++.++.. . .+.+...+....+++++- =+| +|++ ..+ ++|.+|+++. +.|... ..... ..
T Consensus 101 ~~~v~v~~~~~~g~-~---~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~ 175 (330)
T PRK11028 101 ANCVSVSPLDKDGI-P---VAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GA 175 (330)
T ss_pred CCeEEEEEECCCCC-C---CCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CC
Confidence 68999999964211 0 112221111123344321 134 5543 334 7899999975 334321 01111 11
Q ss_pred eEE--EEEEeCCEEEEEec-cccEEEEEEecccCEEEEee------ec-cCCccEEEEEEEEcCCeeEEEEEec-CCcEE
Q 000545 1198 YVV--SLNIVKNFILLGDI-HKSIYFLSWKEQGAQLNLLA------KD-FGSLDCFATEFLIDGSTLSLVVSDE-QKNIQ 1266 (1432)
Q Consensus 1198 ~i~--sl~~~~n~IlvgD~-~~Sv~ll~~~~~~~~l~~~a------rD-~~~~~vta~~fl~d~~~l~~l~~D~-~gNl~ 1266 (1432)
... .+...+.+++|.+. -.+|.++.++...+++..+. .+ ..++|..++.|-.|+.. +.++++ .+.|.
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~--lyv~~~~~~~I~ 253 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH--LYACDRTASLIS 253 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE--EEEecCCCCeEE
Confidence 122 33445569989887 77889988875444443321 12 24567766766556666 455666 56788
Q ss_pred EEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000545 1267 IFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1298 (1432)
Q Consensus 1267 vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~ 1298 (1432)
++++++. +.++...+.+..|..+..+
T Consensus 254 v~~i~~~------~~~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 254 VFSVSED------GSVLSFEGHQPTETQPRGF 279 (330)
T ss_pred EEEEeCC------CCeEEEeEEEeccccCCce
Confidence 8887643 3456667777777655554
No 15
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=3.6 Score=46.75 Aligned_cols=152 Identities=11% Similarity=0.219 Sum_probs=87.9
Q ss_pred CceEEEEEecCeEEEEEcCCCCccCCCcceEEEeeCCC----cccEEEEeCCCCeEEEEEeecccccccccccccccccc
Q 000545 966 NHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKA----TPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEV 1041 (1432)
Q Consensus 966 ~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~----tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~ 1041 (1432)
|.|++++...++. .-+|-+..++|.+ |.++ +.+.. .-..|-|+++.+.+++.+.
T Consensus 150 p~GLifA~~~~~~-~IkLyD~Rs~dkg-PF~t-f~i~~~~~~ew~~l~FS~dGK~iLlsT~------------------- 207 (311)
T KOG1446|consen 150 PEGLIFALANGSE-LIKLYDLRSFDKG-PFTT-FSITDNDEAEWTDLEFSPDGKSILLSTN------------------- 207 (311)
T ss_pred CCCcEEEEecCCC-eEEEEEecccCCC-Ccee-EccCCCCccceeeeEEcCCCCEEEEEeC-------------------
Confidence 4677766554443 2233333444433 5555 66652 3456778888887777542
Q ss_pred cccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecC
Q 000545 1042 GHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQG 1121 (1432)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~ 1121 (1432)
.+.+.++|..++ ..+.+++..+++.-+.+. +.|. ....||+.|.
T Consensus 208 ---------------------~s~~~~lDAf~G----~~~~tfs~~~~~~~~~~~-a~ft-----Pds~Fvl~gs----- 251 (311)
T KOG1446|consen 208 ---------------------ASFIYLLDAFDG----TVKSTFSGYPNAGNLPLS-ATFT-----PDSKFVLSGS----- 251 (311)
T ss_pred ---------------------CCcEEEEEccCC----cEeeeEeeccCCCCccee-EEEC-----CCCcEEEEec-----
Confidence 123457776543 367777777777644432 2232 2356777775
Q ss_pred CCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC--eEEEEeCCeEEEEEccCCee
Q 000545 1122 EDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG--HLLIASGPKIILHKWTGTEL 1186 (1432)
Q Consensus 1122 e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g--~Ll~~vg~~l~v~~~~~~~L 1186 (1432)
..|+|++|.+... +........--|++.++. ||- ..+++...+|..|-....++
T Consensus 252 ----~dg~i~vw~~~tg------~~v~~~~~~~~~~~~~~~-fnP~~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 252 ----DDGTIHVWNLETG------KKVAVLRGPNGGPVSCVR-FNPRYAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred ----CCCcEEEEEcCCC------cEeeEecCCCCCCccccc-cCCceeeeeecCceEEEEecccccc
Confidence 4799999999431 122222222356677666 765 35677778888887665544
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.90 E-value=3.9 Score=45.73 Aligned_cols=140 Identities=12% Similarity=0.062 Sum_probs=82.9
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-Ce-EEEEe-CCeEEEEEccCCe
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-GH-LLIAS-GPKIILHKWTGTE 1185 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~-g~-Ll~~v-g~~l~v~~~~~~~ 1185 (1432)
..++++|. ..|.|.+|++... .....+. ...++|++++-.. +. |+++. +..|++|++...+
T Consensus 105 ~~~~~~~~---------~~~~i~~~~~~~~-----~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSS---------RDKTIKVWDVETG-----KCLTTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEec---------CCCeEEEEECCCc-----EEEEEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 35666664 3789999998631 1111111 3567788887554 44 44444 7899999997554
Q ss_pred eeeEEeecCCCeeEEEEEEeC--CEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCC
Q 000545 1186 LNGIAFYDAPPLYVVSLNIVK--NFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQK 1263 (1432)
Q Consensus 1186 L~~~a~~~~~~~~i~sl~~~~--n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~g 1263 (1432)
+...-. .. ...+.++.... +.+++|..-..+.++..+ ..+....-+ .....+.++.|..+ +.+ +++++.+|
T Consensus 169 ~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~-~~~~~i~~~~~~~~-~~~-~~~~~~~~ 241 (289)
T cd00200 169 CVATLT-GH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS--TGKCLGTLR-GHENGVNSVAFSPD-GYL-LASGSEDG 241 (289)
T ss_pred cceeEe-cC-ccccceEEECCCcCEEEEecCCCcEEEEECC--CCceecchh-hcCCceEEEEEcCC-CcE-EEEEcCCC
Confidence 333211 22 33556666544 488888876777765443 233222221 23347888886433 454 67777899
Q ss_pred cEEEEeeC
Q 000545 1264 NIQIFYYA 1271 (1432)
Q Consensus 1264 Nl~vl~~~ 1271 (1432)
.|.++...
T Consensus 242 ~i~i~~~~ 249 (289)
T cd00200 242 TIRVWDLR 249 (289)
T ss_pred cEEEEEcC
Confidence 99999754
No 17
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=1.4 Score=56.26 Aligned_cols=122 Identities=13% Similarity=0.208 Sum_probs=75.4
Q ss_pred CCceEEEeeccCCCCCceEEEEE-ecCeEEEEEcCCCCcc---CCCcceEEEeeCCCcccEEEEeCCCCeEEEEEeeccc
Q 000545 951 DGSIVAFTVLHNVNCNHGFIYVT-SQGILKICQLPSGSTY---DNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVL 1026 (1432)
Q Consensus 951 ~~~v~~~~~f~~~~~~~g~i~~~-~~~~L~I~~l~~~~~~---d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s~~~~ 1026 (1432)
+++|.+++=+.. +-|+++. -+|.++|-.+.+..-. ..-.+... ..+.+-..+.++||....+++.+..
T Consensus 138 ~apVl~l~~~p~----~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-~~~s~i~~~~aW~Pk~g~la~~~~d--- 209 (933)
T KOG1274|consen 138 DAPVLQLSYDPK----GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-FILSRICTRLAWHPKGGTLAVPPVD--- 209 (933)
T ss_pred CCceeeeeEcCC----CCEEEEEecCceEEEEEcccchhhhhcccCCcccc-ccccceeeeeeecCCCCeEEeeccC---
Confidence 456766543222 2345443 3788999888864311 11011112 2223446678899999999886431
Q ss_pred ccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCC
Q 000545 1027 KPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTK 1106 (1432)
Q Consensus 1027 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~ 1106 (1432)
.+|+++++ ..|+....+..+..+.. ++.++|.
T Consensus 210 -------------------------------------~~Vkvy~r----~~we~~f~Lr~~~~ss~--~~~~~ws----- 241 (933)
T KOG1274|consen 210 -------------------------------------NTVKVYSR----KGWELQFKLRDKLSSSK--FSDLQWS----- 241 (933)
T ss_pred -------------------------------------CeEEEEcc----CCceeheeecccccccc--eEEEEEc-----
Confidence 26788887 37887665555555555 4445664
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEee
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGR 1137 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~ 1137 (1432)
....||+-|| ..|.|+||++..
T Consensus 242 PnG~YiAAs~---------~~g~I~vWnv~t 263 (933)
T KOG1274|consen 242 PNGKYIAAST---------LDGQILVWNVDT 263 (933)
T ss_pred CCCcEEeeec---------cCCcEEEEeccc
Confidence 2468999998 589999999974
No 18
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=4.7 Score=45.68 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=80.6
Q ss_pred eEEEEEecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEEEeecccccccccccccccccccccccC
Q 000545 968 GFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1047 (1432)
Q Consensus 968 g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~ 1047 (1432)
-+|+.+++..+.|-.|... +..+..|. -+|.+..|.|+..|+..-|++.+.. ...... ..|..
T Consensus 147 ~LvVg~~~r~v~iyDLRn~---~~~~q~re-S~lkyqtR~v~~~pn~eGy~~sSie---GRVavE---~~d~s------- 209 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNL---DEPFQRRE-SSLKYQTRCVALVPNGEGYVVSSIE---GRVAVE---YFDDS------- 209 (323)
T ss_pred EEEEeecCceEEEEEcccc---cchhhhcc-ccceeEEEEEEEecCCCceEEEeec---ceEEEE---ccCCc-------
Confidence 3444355556666666543 34456677 8899999999999988888886441 111000 01110
Q ss_pred CCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccc
Q 000545 1048 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR 1127 (1432)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~ 1127 (1432)
++. ...+|.++. |+.....-|.+..+-.+.|.. ....++=|- +-
T Consensus 210 -----~~~----~skkyaFkC-------------Hr~~~~~~~~~yPVNai~Fhp-----~~~tfaTgG---------sD 253 (323)
T KOG1036|consen 210 -----EEA----QSKKYAFKC-------------HRLSEKDTEIIYPVNAIAFHP-----IHGTFATGG---------SD 253 (323)
T ss_pred -----hHH----hhhceeEEe-------------eecccCCceEEEEeceeEecc-----ccceEEecC---------CC
Confidence 000 012333332 112224456667777777752 233455443 58
Q ss_pred eeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEe
Q 000545 1128 GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIAS 1172 (1432)
Q Consensus 1128 Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~v 1172 (1432)
|.+.+|+... +++|+.+|+.+..-+..+++.-...|.+|.
T Consensus 254 G~V~~Wd~~~-----rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 254 GIVNIWDLFN-----RKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceEEEccCcc-----hhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 9999998864 246899988744444444443333454443
No 19
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.73 E-value=2.2 Score=57.38 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=84.8
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCe-EEEEe-CCeEEEEEccCCe-
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGH-LLIAS-GPKIILHKWTGTE- 1185 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~-Ll~~v-g~~l~v~~~~~~~- 1185 (1432)
..+|++|. ..|.|++|++.... ..+..+ ....++|+++.-.++. |+++. ...|.+|++....
T Consensus 630 g~~latgs---------~dg~I~iwD~~~~~----~~~~~~--~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 630 GRSLAFGS---------ADHKVYYYDLRNPK----LPLCTM--IGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred CCEEEEEe---------CCCeEEEEECCCCC----ccceEe--cCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc
Confidence 46888887 37899999986421 112211 2356788888755554 44443 3689999986321
Q ss_pred ---eeeEEeecCC--CeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEE----------eeeccCCccEEEEEEEEc
Q 000545 1186 ---LNGIAFYDAP--PLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNL----------LAKDFGSLDCFATEFLID 1250 (1432)
Q Consensus 1186 ---L~~~a~~~~~--~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~----------~arD~~~~~vta~~fl~d 1250 (1432)
......+... ....++....+++|++|..-..|.++........+.. +.-+....+|.++.|-.+
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 1111112111 2333445556789999988788877643211111000 011223456888887555
Q ss_pred CCeeEEEEEecCCcEEEEee
Q 000545 1251 GSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1251 ~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
... ++++..+|+|.+++.
T Consensus 775 ~~~--lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SST--LVAANSTGNIKILEM 792 (793)
T ss_pred CCe--EEEecCCCcEEEEec
Confidence 555 789999999999864
No 20
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.51 E-value=7.8 Score=46.43 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=92.6
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEe--ecCceEEEcc-ccCeEEEEe---CCeEEEEEcc--CCeeeeEEeecCC---
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKE--LKGAISALAS-LQGHLLIAS---GPKIILHKWT--GTELNGIAFYDAP--- 1195 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~--~~g~V~al~~-~~g~Ll~~v---g~~l~v~~~~--~~~L~~~a~~~~~--- 1195 (1432)
..+|++|++.... .+|+...... .-..+..|.- =+|+.+..+ .+.|.+|++. ..+|.......+.
T Consensus 165 ~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 165 ADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 5689999997642 1254444333 2234444442 245433333 5889999998 4445544433321
Q ss_pred ---CeeEEEEEE--eCCEEEEEecc-ccEEEEEEecccCEEEEeeeccC-CccEEEEEEEEcCCeeEEEEEecCCcEEEE
Q 000545 1196 ---PLYVVSLNI--VKNFILLGDIH-KSIYFLSWKEQGAQLNLLAKDFG-SLDCFATEFLIDGSTLSLVVSDEQKNIQIF 1268 (1432)
Q Consensus 1196 ---~~~i~sl~~--~~n~IlvgD~~-~Sv~ll~~~~~~~~l~~~arD~~-~~~vta~~fl~d~~~l~~l~~D~~gNl~vl 1268 (1432)
......|.. .+.+++|+..- .+|+++..+.+.++|..+..=.. ..+-..+.|--|++.| +++.-..++|.+|
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l-~Va~~~s~~v~vf 319 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL-YVANQDSNTVSVF 319 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE-EEEETTTTEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE-EEEecCCCeEEEE
Confidence 113444444 57899998855 58999988777777777654322 3345555543466665 4555578899999
Q ss_pred eeCCCCCCCccCceEEEEEEEecCcceeE
Q 000545 1269 YYAPKMSESWKGQKLLSRAEFHVGAHVTK 1297 (1432)
Q Consensus 1269 ~~~p~~~~s~~~~kL~~~~~f~lg~~vt~ 1297 (1432)
+.+++. -+|...+...-...++|
T Consensus 320 ~~d~~t------G~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 320 DIDPDT------GKLTPVGSSVPIPSPVC 342 (345)
T ss_dssp EEETTT------TEEEEEEEEEESSSEEE
T ss_pred EEeCCC------CcEEEecccccCCCCEE
Confidence 987653 36776665333333333
No 21
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.91 E-value=1.2 Score=56.31 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=88.0
Q ss_pred eEEEEEEeecCCCCCccEEEEEEE-eecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCC
Q 000545 1129 RVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKN 1207 (1432)
Q Consensus 1129 ri~vf~i~~~~~~~~~~l~~v~~~-~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n 1207 (1432)
.+.+|++. ||.+++-- +...-|+||++...+..+|.|++|++|.-++. -++++....--|.-+...|+
T Consensus 57 sfqvYd~~--------kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~---i~~~~~~~~a~v~~l~~fGe 125 (910)
T KOG1539|consen 57 SFQVYDVN--------KLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAYARGKH---IRHTTLLHGAKVHLLLPFGE 125 (910)
T ss_pred eEEEEecc--------ceEEEEecCCCCCceEEEEecCceEEEecCcEEEEEEccce---EEEEeccccceEEEEeeecc
Confidence 34577764 48777765 78999999999999999999999999987753 22333331235677888999
Q ss_pred EEEEEeccccEEEEEEec--cc-C---EEEEeeeccCCccEEEEEEEEcC-CeeEEEEEecCCcEEEEeeC
Q 000545 1208 FILLGDIHKSIYFLSWKE--QG-A---QLNLLAKDFGSLDCFATEFLIDG-STLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1208 ~IlvgD~~~Sv~ll~~~~--~~-~---~l~~~arD~~~~~vta~~fl~d~-~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.++.+|....+.+..... ++ + .+...-.|+ ++++...--+ |. ++++-..|++.++...
T Consensus 126 ~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~----Ital~HP~TYLNK--IvvGs~~G~lql~Nvr 190 (910)
T KOG1539|consen 126 HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF----ITALLHPSTYLNK--IVVGSSQGRLQLWNVR 190 (910)
T ss_pred eEEEEEccCcEEEEEeccccccccccceeeeccCCc----eeeEecchhheee--EEEeecCCcEEEEEec
Confidence 999999999999988764 12 1 122222222 5555432111 45 7888999999998754
No 22
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.91 E-value=6 Score=48.14 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=48.1
Q ss_pred EEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEeeec
Q 000545 753 YSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRW 832 (1432)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 832 (1432)
|++|+.++|.|.|+.+-.-.+++. .++.. ..+ +. . ..+.+...|..+..+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~-~~i~~--~~~-----------~~-------------~---~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYN-ENIRE--SFL-----------SK-------------S---SSSYVTSIEFSVMTL 148 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEE-EEGGG----T------------S-------------S-------EEEEEEEEEE-
T ss_pred EEEEEecCCcEEEEECCCCeEEee-ccccc--ccc-----------cc-------------c---cccCeeEEEEEEEec
Confidence 999999999999999977777776 33321 000 00 0 011222334344455
Q ss_pred cCC-CCccEEEEEeeCCeEEEEEEee
Q 000545 833 SAH-HSRPFLFAILTDGTILCYQAYL 857 (1432)
Q Consensus 833 g~~-~~~~~L~vgl~~G~l~~y~~~~ 857 (1432)
|++ ...+.|+||+..|.++.|++.+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEec
Confidence 544 3789999999999999999854
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.46 E-value=19 Score=45.51 Aligned_cols=303 Identities=13% Similarity=0.140 Sum_probs=159.6
Q ss_pred CCceEEEEeCCCceEEEEeCCceEEeeccCCCceEEEeeccCCCCCceEEEE--EecCeEEEEEcCCCCccCCCcceEEE
Q 000545 921 SGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYV--TSQGILKICQLPSGSTYDNYWPVQKV 998 (1432)
Q Consensus 921 ~g~~~Vf~~g~rP~~i~~~~~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i~~--~~~~~L~I~~l~~~~~~d~~~~ir~~ 998 (1432)
+|++.++=.|.|-++.--.+++-...|+-....|..++- .|.|.+++ +.+|....+.+... ..+.+
T Consensus 25 dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ial-----Sp~g~lllavdE~g~~~lvs~~~r------~Vlh~- 92 (893)
T KOG0291|consen 25 DGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIAL-----SPDGTLLLAVDERGRALLVSLLSR------SVLHR- 92 (893)
T ss_pred CCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEe-----CCCceEEEEEcCCCcEEEEecccc------eeeEE-
Confidence 355666667777655544555566666655556655543 35554333 33444555665543 35566
Q ss_pred eeCCCcccEEEEeCCCCeEEEEEeeccccccccccccccccccc-----------------ccccCCCCCcccccccccc
Q 000545 999 IPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVG-----------------HQIDNHNLSSVDLHRTYTV 1061 (1432)
Q Consensus 999 i~L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~ 1061 (1432)
+.+..-...|.++|+.+.++|++..-. .. .-.|....++.. -.|. .+.+......
T Consensus 93 f~fk~~v~~i~fSPng~~fav~~gn~l--qi-w~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws-----~DSr~l~~gs 164 (893)
T KOG0291|consen 93 FNFKRGVGAIKFSPNGKFFAVGCGNLL--QI-WHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS-----DDSRLLVTGS 164 (893)
T ss_pred EeecCccceEEECCCCcEEEEEeccee--EE-EecCcchhcccCcceEeeeecCCccceeEEEec-----cCCceEEecc
Confidence 788888999999999999999876310 00 000000000100 0000 0000000000
Q ss_pred ceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecC--
Q 000545 1062 EEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNA-- 1139 (1432)
Q Consensus 1062 ~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~-- 1139 (1432)
..-+.|+++.. .|+-+..+.|.-.-- .+..+.|. .+..+.+.| ...|.|.+|++...|
T Consensus 165 rD~s~rl~~v~----~~k~~~~~~l~gHkd--~VvacfF~----~~~~~l~tv----------skdG~l~~W~~~~~P~~ 224 (893)
T KOG0291|consen 165 RDLSARLFGVD----GNKNLFTYALNGHKD--YVVACFFG----ANSLDLYTV----------SKDGALFVWTCDLRPPE 224 (893)
T ss_pred ccceEEEEEec----cccccceEeccCCCc--ceEEEEec----cCcceEEEE----------ecCceEEEEEecCCCcc
Confidence 11133444321 222222233322111 12222232 122334444 358999999998211
Q ss_pred ----------------C-CCCcc-----EEEEEEEeec---CceEEEccccC--eEEEEeCCeEE-EEEccCCeeeeEEe
Q 000545 1140 ----------------D-NPQNL-----VTEVYSKELK---GAISALASLQG--HLLIASGPKII-LHKWTGTELNGIAF 1191 (1432)
Q Consensus 1140 ----------------~-~~~~~-----l~~v~~~~~~---g~V~al~~~~g--~Ll~~vg~~l~-v~~~~~~~L~~~a~ 1191 (1432)
+ +++.| .+...+.-.. ..|+|..--.+ .|+++-.+-++ +|++.+-.|+-...
T Consensus 225 ~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LS 304 (893)
T KOG0291|consen 225 LDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS 304 (893)
T ss_pred cccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEee
Confidence 0 01111 1111111122 56777554445 35556555555 89998877766555
Q ss_pred e-cCCCeeEEEEEEeCCEEEEEecccc-EEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1192 Y-DAPPLYVVSLNIVKNFILLGDIHKS-IYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1192 ~-~~~~~~i~sl~~~~n~IlvgD~~~S-v~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
. +. ++...++..-||.|.+|-..-+ +-+..|+.+.+-|.. +-+...++++++-.|+.. ++.+-.+|-+-++.
T Consensus 305 is~~-~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ---QgH~~~i~~l~YSpDgq~--iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 305 ISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ---QGHSDRITSLAYSPDGQL--IATGAEDGKVKVWN 378 (893)
T ss_pred cccc-eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec---cccccceeeEEECCCCcE--EEeccCCCcEEEEe
Confidence 4 45 6666677777999999987633 445566766665543 445566889997666655 67777788888875
No 24
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.30 E-value=21 Score=45.23 Aligned_cols=208 Identities=16% Similarity=0.231 Sum_probs=129.7
Q ss_pred CceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc---cC
Q 000545 1090 ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL---QG 1166 (1432)
Q Consensus 1090 E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~---~g 1166 (1432)
++++|.+.|. ...||++|| ..|.|.+|++... ..++.+- ..+|++-+|... .|
T Consensus 413 ~y~l~~~Fvp--------gd~~Iv~G~---------k~Gel~vfdlaS~-----~l~Eti~--AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 413 GYILASKFVP--------GDRYIVLGT---------KNGELQVFDLASA-----SLVETIR--AHDGAIWSISLSPDNKG 468 (888)
T ss_pred ccEEEEEecC--------CCceEEEec---------cCCceEEEEeehh-----hhhhhhh--ccccceeeeeecCCCCc
Confidence 3788877663 458999999 5899999999752 1133322 357888887754 34
Q ss_pred eEEEEeCCeEEEEEccC--------Ceee---eEEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEecccCEEEEe
Q 000545 1167 HLLIASGPKIILHKWTG--------TELN---GIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLL 1233 (1432)
Q Consensus 1167 ~Ll~~vg~~l~v~~~~~--------~~L~---~~a~~~~~~~~i~sl~~~--~n~IlvgD~~~Sv~ll~~~~~~~~l~~~ 1233 (1432)
.+.++..++|.+|++.- ++.+ ..-.++. +--|.++.+. +-+++||=+-.-|.++..+.-.-.+.+.
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY 547 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY 547 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec
Confidence 56666668889999841 2221 1223344 4455555554 6788888666666666555433333433
Q ss_pred eeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEe-cCcceeEEEEEeeecCCCCCCC
Q 000545 1234 AKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFH-VGAHVTKFLRLQMLATSSDRTG 1312 (1432)
Q Consensus 1234 arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~-lg~~vt~~~~~~l~~~~~~~~~ 1312 (1432)
+ +.+.|+|++. --++.| ++.+-.+.|+-+.-.+=- .+.-+|| .-|.|++.+ +.|.
T Consensus 548 G---HkLPV~smDI-S~DSkl-ivTgSADKnVKiWGLdFG----------DCHKS~fAHdDSvm~V~---F~P~------ 603 (888)
T KOG0306|consen 548 G---HKLPVLSMDI-SPDSKL-IVTGSADKNVKIWGLDFG----------DCHKSFFAHDDSVMSVQ---FLPK------ 603 (888)
T ss_pred c---cccceeEEec-cCCcCe-EEeccCCCceEEeccccc----------hhhhhhhcccCceeEEE---Eccc------
Confidence 3 6789999994 444555 788888888877644321 1222333 345666554 3442
Q ss_pred CCCCCCCCCceEEEEEecCCcEEEEEeCChHhHHHHHHHHHHHHhc
Q 000545 1313 AAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDS 1358 (1432)
Q Consensus 1313 ~~~g~~~~~~~~il~~t~~GsIg~l~pl~e~~~~~L~~Lq~~l~~~ 1358 (1432)
...+|+ .|--|.+..-+-+.|...+.|..+..+.
T Consensus 604 ----------~~~FFt--~gKD~kvKqWDg~kFe~iq~L~~H~~ev 637 (888)
T KOG0306|consen 604 ----------THLFFT--CGKDGKVKQWDGEKFEEIQKLDGHHSEV 637 (888)
T ss_pred ----------ceeEEE--ecCcceEEeechhhhhhheeeccchhee
Confidence 245554 4666777777777787788887777664
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=93.98 E-value=4.8 Score=46.30 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=42.6
Q ss_pred cEEEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEee
Q 000545 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ 830 (1432)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~v~~i~~~ 830 (1432)
+.|++-+..|+++.||.|...++...+.+. --.+..+.+.
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGh----------------------------------------i~~vr~vavS 202 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGH----------------------------------------IETVRGVAVS 202 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecch----------------------------------------hheeeeeeec
Confidence 459999999999999999987765544210 0113333322
Q ss_pred eccCCCCccEEEEEeeCCeEEEEEE
Q 000545 831 RWSAHHSRPFLFAILTDGTILCYQA 855 (1432)
Q Consensus 831 ~~g~~~~~~~L~vgl~~G~l~~y~~ 855 (1432)
...||||....|+++-.|.+
T Consensus 203 -----~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 203 -----KRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred -----ccCceEEEecCCCeeEEEec
Confidence 24799999999999999886
No 26
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=93.97 E-value=14 Score=42.05 Aligned_cols=201 Identities=12% Similarity=0.174 Sum_probs=119.0
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc--cCeEEEEe-CCeEEEEEccCCe
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL--QGHLLIAS-GPKIILHKWTGTE 1185 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~--~g~Ll~~v-g~~l~v~~~~~~~ 1185 (1432)
...+++|+ ..|.|..|+++-.+. .++ -...++|.+|+-. .|.+++|. +++|.+|+...+.
T Consensus 65 ~~~~~~G~---------~dg~vr~~Dln~~~~-----~~i---gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 65 ESTIVTGG---------LDGQVRRYDLNTGNE-----DQI---GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred CceEEEec---------cCceEEEEEecCCcc-----eee---ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 45677777 489999999975321 222 2256888888866 67776554 6899999987642
Q ss_pred eeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeecc-CCccEEEEEEEEcCCeeEEEEEecCCc
Q 000545 1186 LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDF-GSLDCFATEFLIDGSTLSLVVSDEQKN 1264 (1432)
Q Consensus 1186 L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~-~~~~vta~~fl~d~~~l~~l~~D~~gN 1264 (1432)
.+..++. +--|-++.+.+|+++||..-+.|..+..+.. ..-.--|+- -...+-|+.+..... +++++--+|-
T Consensus 128 --~~~~~d~-~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~--~~~~q~reS~lkyqtR~v~~~pn~e--Gy~~sSieGR 200 (323)
T KOG1036|consen 128 --VVGTFDQ-GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL--DEPFQRRESSLKYQTRCVALVPNGE--GYVVSSIEGR 200 (323)
T ss_pred --ccccccc-CceEEEEeccCCEEEEeecCceEEEEEcccc--cchhhhccccceeEEEEEEEecCCC--ceEEEeecce
Confidence 2233455 5577788999999999999999988654321 111112222 123345666433332 4899999999
Q ss_pred EEEEeeCCCCCCCccCceEEEEEE------EecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEE
Q 000545 1265 IQIFYYAPKMSESWKGQKLLSRAE------FHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIA 1338 (1432)
Q Consensus 1265 l~vl~~~p~~~~s~~~~kL~~~~~------f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~ 1338 (1432)
+.+=-+++. ++. ...|..-++| ..+.-.||++-- .|. ...+..|+.+|-+-.--
T Consensus 201 VavE~~d~s-~~~-~skkyaFkCHr~~~~~~~~~yPVNai~F---hp~---------------~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 201 VAVEYFDDS-EEA-QSKKYAFKCHRLSEKDTEIIYPVNAIAF---HPI---------------HGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEccCCc-hHH-hhhceeEEeeecccCCceEEEEeceeEe---ccc---------------cceEEecCCCceEEEcc
Confidence 987544444 221 1223322222 333334455432 221 12455677888877777
Q ss_pred eCChHhHHHHHHHHH
Q 000545 1339 PLDELTFRRLQSLQK 1353 (1432)
Q Consensus 1339 pl~e~~~~~L~~Lq~ 1353 (1432)
+.+.+.++.|..-+.
T Consensus 261 ~~~rKrl~q~~~~~~ 275 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYET 275 (323)
T ss_pred CcchhhhhhccCCCC
Confidence 777766654444433
No 27
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.83 E-value=3.3 Score=49.23 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=92.5
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCC-CCCccEEEEEE-EeecCceEEEcc----ccCeEE-EEeCCeEEEEEc
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNAD-NPQNLVTEVYS-KELKGAISALAS----LQGHLL-IASGPKIILHKW 1181 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~-~~~~~l~~v~~-~~~~g~V~al~~----~~g~Ll-~~vg~~l~v~~~ 1181 (1432)
..+|+=|. .-|++++|.+..-.+ ......+-+|. .+..=+|+.|.. .+.+|+ ++..+++.+|++
T Consensus 135 gs~iiTgs---------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 135 GSHIITGS---------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred CcEEEecC---------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 45666554 479999998875111 01111222222 223446666652 355777 445689999999
Q ss_pred cCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccc---------------CEEEEeeeccCCccEEEEE
Q 000545 1182 TGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQG---------------AQLNLLAKDFGSLDCFATE 1246 (1432)
Q Consensus 1182 ~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~---------------~~l~~~arD~~~~~vta~~ 1246 (1432)
....|+....++. +...+.+...+-+++||..--.+++..|..-+ -++-.+-.......+||.+
T Consensus 206 S~g~LLlti~fp~-si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 206 SLGVLLLTITFPS-SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred ccceeeEEEecCC-cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 9888877766655 44555555567899999988888887664221 1111111111224688888
Q ss_pred EEEcCCeeEEEEEecCCcEEEEe
Q 000545 1247 FLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1247 fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
.-.|+.. ++.+|.+|++.+..
T Consensus 285 is~Dgtl--LlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 285 ISTDGTL--LLSGDEDGKVCVWD 305 (476)
T ss_pred EecCccE--EEeeCCCCCEEEEe
Confidence 6567655 79999999999986
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=93.21 E-value=16 Score=40.36 Aligned_cols=144 Identities=16% Similarity=0.197 Sum_probs=92.9
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEEeCC--eEEEEEccC
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIASGP--KIILHKWTG 1183 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~-~g~Ll~~vg~--~l~v~~~~~ 1183 (1432)
.+..-|++|+ -+|+|.+|++.++. ..-+++ -|..-+|.+++.. .|..++|+++ ++++|++-.
T Consensus 134 pnQteLis~d---------qsg~irvWDl~~~~----c~~~li--Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 134 PNQTELISGD---------QSGNIRVWDLGENS----CTHELI--PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCcceEEeec---------CCCcEEEEEccCCc----cccccC--CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3567788888 48999999997631 001222 1233566676644 6777777775 578888843
Q ss_pred ----CeeeeEEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEE
Q 000545 1184 ----TELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLV 1257 (1432)
Q Consensus 1184 ----~~L~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l 1257 (1432)
.+|.++--+.+...||++..- ...+++..-.-+-|.+. +.+.--..++.-+-..|||-.+.|-.|+.. ++
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iw--n~~~~~kle~~l~gh~rWvWdc~FS~dg~Y--lv 274 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIW--NTDDFFKLELVLTGHQRWVWDCAFSADGEY--LV 274 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEE--ecCCceeeEEEeecCCceEEeeeeccCccE--EE
Confidence 357777666665677876443 34577777777777775 444442334444567799999999777666 56
Q ss_pred EEecCCcEEEEe
Q 000545 1258 VSDEQKNIQIFY 1269 (1432)
Q Consensus 1258 ~~D~~gNl~vl~ 1269 (1432)
.+..++-..+..
T Consensus 275 Tassd~~~rlW~ 286 (311)
T KOG0315|consen 275 TASSDHTARLWD 286 (311)
T ss_pred ecCCCCceeecc
Confidence 666666555543
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=92.78 E-value=0.67 Score=54.94 Aligned_cols=213 Identities=12% Similarity=0.148 Sum_probs=116.3
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCC
Q 000545 1064 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1143 (1432)
Q Consensus 1064 ~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~ 1143 (1432)
..|++-|..++ +++ ..|..++.+.|++ |.. ++...++||+ ..|+|+-|++...
T Consensus 280 ~~lKlwDtETG----~~~--~~f~~~~~~~cvk---f~p----d~~n~fl~G~---------sd~ki~~wDiRs~----- 332 (503)
T KOG0282|consen 280 RFLKLWDTETG----QVL--SRFHLDKVPTCVK---FHP----DNQNIFLVGG---------SDKKIRQWDIRSG----- 332 (503)
T ss_pred eeeeeeccccc----eEE--EEEecCCCceeee---cCC----CCCcEEEEec---------CCCcEEEEeccch-----
Confidence 35788776432 333 3566678888875 442 2357888898 5899999999642
Q ss_pred ccEEEEEEEe-ecCceEEEccc--cCeEEEEeC-CeEEEEEccCCe-eeeEEeecCCCeeEEEEEEeCCEEEEEeccccE
Q 000545 1144 NLVTEVYSKE-LKGAISALASL--QGHLLIASG-PKIILHKWTGTE-LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSI 1218 (1432)
Q Consensus 1144 ~~l~~v~~~~-~~g~V~al~~~--~g~Ll~~vg-~~l~v~~~~~~~-L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv 1218 (1432)
+++++.+ .=|+|..|.=+ +-+++.++- ..++||+++..- +.-.+...++.+....+...+++++.=-+-.-+
T Consensus 333 ---kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 333 ---KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI 409 (503)
T ss_pred ---HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence 1232222 23677777744 336665554 789999998542 222232222111222333333333221111111
Q ss_pred EEE----EEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcc
Q 000545 1219 YFL----SWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAH 1294 (1432)
Q Consensus 1219 ~ll----~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~ 1294 (1432)
.++ +|+.... ..+..-..+-.-+.++|-.|+.+ ++.+|.+|+++++.+.+ .||.....-|-+-.
T Consensus 410 ~ifs~~~~~r~nkk--K~feGh~vaGys~~v~fSpDG~~--l~SGdsdG~v~~wdwkt--------~kl~~~lkah~~~c 477 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKK--KRFEGHSVAGYSCQVDFSPDGRT--LCSGDSDGKVNFWDWKT--------TKLVSKLKAHDQPC 477 (503)
T ss_pred EEEecccccccCHh--hhhcceeccCceeeEEEcCCCCe--EEeecCCccEEEeechh--------hhhhhccccCCcce
Confidence 111 2221111 12223334445678888889998 79999999999998764 35555555553322
Q ss_pred eeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEE
Q 000545 1295 VTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGC 1336 (1432)
Q Consensus 1295 vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~ 1336 (1432)
|..- ..|.. ...++.++.+|.|-+
T Consensus 478 i~v~----wHP~e--------------~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 478 IGVD----WHPVE--------------PSKVATCGWDGLIKI 501 (503)
T ss_pred EEEE----ecCCC--------------cceeEecccCceeEe
Confidence 2222 23321 235777778887754
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.78 E-value=34 Score=43.50 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=93.9
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cC-eEEEEeCCeEEEEEccCC---eeee---EEeecCCCe
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QG-HLLIASGPKIILHKWTGT---ELNG---IAFYDAPPL 1197 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~-~g-~Ll~~vg~~l~v~~~~~~---~L~~---~a~~~~~~~ 1197 (1432)
.+||.+...... --.+|...++.+|.||+-- +| ++++|.|+-+.||...+. ++.+ ...+-..--
T Consensus 75 E~g~~~lvs~~~--------r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fd 146 (893)
T KOG0291|consen 75 ERGRALLVSLLS--------RSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFD 146 (893)
T ss_pred CCCcEEEEeccc--------ceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCcc
Confidence 377776655532 3457888999999999833 55 677899999999999752 2222 222222134
Q ss_pred eEEEEEEeC--CEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1198 YVVSLNIVK--NFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1198 ~i~sl~~~~--n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
-|++|.-.. ++|++|---.++.++..+...+ |...+-.-+.-.|.++.|..+..+ +..--++|-|+++.|+
T Consensus 147 di~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-~~~~~l~gHkd~VvacfF~~~~~~--l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 147 DITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-LFTYALNGHKDYVVACFFGANSLD--LYTVSKDGALFVWTCD 219 (893)
T ss_pred ceeEEEeccCCceEEeccccceEEEEEeccccc-cceEeccCCCcceEEEEeccCcce--EEEEecCceEEEEEec
Confidence 577777544 4777777777888887776555 666666667778999988767666 5666788999998886
No 31
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.59 E-value=1.7 Score=55.10 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=77.5
Q ss_pred eeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-------
Q 000545 1079 QTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS------- 1151 (1432)
Q Consensus 1079 ~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~------- 1151 (1432)
++.+-++++ |.|+++|... ...+.|||| -.|..++|.... ++++..
T Consensus 443 ~Vv~W~Dl~--~lITAvcy~P--------dGk~avIGt---------~~G~C~fY~t~~--------lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 443 KVVDWNDLR--DLITAVCYSP--------DGKGAVIGT---------FNGYCRFYDTEG--------LKLVSDFHIRLHN 495 (712)
T ss_pred eeEeehhhh--hhheeEEecc--------CCceEEEEE---------eccEEEEEEccC--------CeEEEeeeEeecc
Confidence 444444555 8899888542 358999999 489999998853 222222
Q ss_pred -EeecC-ceEEEccccC---eEEEEeC-CeEEEEEccCCeeee--EEeecCCCeeEE-EEEEeCCEEEEEeccccEEEEE
Q 000545 1152 -KELKG-AISALASLQG---HLLIASG-PKIILHKWTGTELNG--IAFYDAPPLYVV-SLNIVKNFILLGDIHKSIYFLS 1222 (1432)
Q Consensus 1152 -~~~~g-~V~al~~~~g---~Ll~~vg-~~l~v~~~~~~~L~~--~a~~~~~~~~i~-sl~~~~n~IlvgD~~~Sv~ll~ 1222 (1432)
+..++ -||.+.-+-| ++|+..+ ++|+||+..+++|+- ++|..+ ...+. ++...|.+|+.|-=-..|++.+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-SSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC-CcceeeeEccCCCEEEEeecCceEEEEe
Confidence 12223 4888887743 5676666 899999998877543 666655 55444 4666788999988445555555
Q ss_pred Ee
Q 000545 1223 WK 1224 (1432)
Q Consensus 1223 ~~ 1224 (1432)
++
T Consensus 575 ~~ 576 (712)
T KOG0283|consen 575 ND 576 (712)
T ss_pred CC
Confidence 54
No 32
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.50 E-value=18 Score=41.49 Aligned_cols=135 Identities=17% Similarity=0.256 Sum_probs=87.8
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCc---eEEEccc-cCeEEEEeCC---eEEEEEccCCeeeeEEe---ecCCC
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGA---ISALASL-QGHLLIASGP---KIILHKWTGTELNGIAF---YDAPP 1196 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~---V~al~~~-~g~Ll~~vg~---~l~v~~~~~~~L~~~a~---~~~~~ 1196 (1432)
..+|+||.+..+ ++++|..++..- .-++++. +..+||.=|. .|.|-++...+..+-.+ .+. .
T Consensus 112 ~~~I~VytF~~n-------~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-~ 183 (346)
T KOG2111|consen 112 ENKIYVYTFPDN-------PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-D 183 (346)
T ss_pred cCeEEEEEcCCC-------hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-c
Confidence 789999999653 666777776543 3334433 3467777774 46777776554422222 233 4
Q ss_pred eeEEEEEEeCCEEEEEeccccEEEEEEeccc-CEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCC
Q 000545 1197 LYVVSLNIVKNFILLGDIHKSIYFLSWKEQG-AQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1197 ~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~-~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p 1272 (1432)
+-.+.|.-.|.+| ..-..+|--+=-|+.+. ..+.++=|-..+-.++++.|-.|..- +.++-+.|-|++|...+
T Consensus 184 Iacv~Ln~~Gt~v-ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~--LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 184 IACVALNLQGTLV-ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW--LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeEEEEcCCccEE-EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE--EEEEcCCCeEEEEEeec
Confidence 4444455455554 34445666566677654 57788999999999999998555544 67788889999999754
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.48 E-value=52 Score=44.34 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=79.9
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--ccCe-EEEEe-CCeEEEEEccCC
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--LQGH-LLIAS-GPKIILHKWTGT 1184 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~--~~g~-Ll~~v-g~~l~v~~~~~~ 1184 (1432)
..+|+.|. ..|.|.+|++... ..+. .....+.|.++.- -+|+ |++|. ...|++|++...
T Consensus 588 ~~~L~Sgs---------~Dg~v~iWd~~~~-----~~~~---~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 588 PTLLASGS---------DDGSVKLWSINQG-----VSIG---TIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred CCEEEEEc---------CCCEEEEEECCCC-----cEEE---EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 45777775 3789999998542 1122 2234567777753 2454 44443 368999999754
Q ss_pred eeeeEEeecCCCeeEEEEEE-eCCEEEEEeccccEEEEEEecc-----cCEEEEeeeccCCccEEEEEEEEcCCeeEEEE
Q 000545 1185 ELNGIAFYDAPPLYVVSLNI-VKNFILLGDIHKSIYFLSWKEQ-----GAQLNLLAKDFGSLDCFATEFLIDGSTLSLVV 1258 (1432)
Q Consensus 1185 ~L~~~a~~~~~~~~i~sl~~-~~n~IlvgD~~~Sv~ll~~~~~-----~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~ 1258 (1432)
+.....+... ...|.++.. .++.|+.|..-..|.++..... ...+..+. .+..++.++.|-.++.. +++
T Consensus 651 ~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~--las 725 (793)
T PLN00181 651 KLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGY--IAT 725 (793)
T ss_pred CccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCE--EEE
Confidence 3211111122 334555554 3568888877677777654321 11222222 12345566665455554 788
Q ss_pred EecCCcEEEEee
Q 000545 1259 SDEQKNIQIFYY 1270 (1432)
Q Consensus 1259 ~D~~gNl~vl~~ 1270 (1432)
+..+|.++++..
T Consensus 726 gs~D~~v~iw~~ 737 (793)
T PLN00181 726 GSETNEVFVYHK 737 (793)
T ss_pred EeCCCEEEEEEC
Confidence 888999999874
No 34
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.06 E-value=43 Score=42.47 Aligned_cols=169 Identities=15% Similarity=0.158 Sum_probs=92.3
Q ss_pred CceEEeeccCCCceEEEeeccCCCCCceEEEEEecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEE
Q 000545 941 ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1432)
Q Consensus 941 ~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~ 1020 (1432)
..++.-|+. +.+.++.-.+.+.-..|-..++..+.=.++.++.... .. .-.++ .|-.+-..+.++.+..+-++++
T Consensus 225 ~~l~~lp~y--e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~-~~~~~-~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 225 KKLKTLPLY--ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KC-VYKQR-QSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred hhhheechh--hheeeEEEechhcCCcceEEEEecCCceEEEEecccc-hh-hhhhc-cCCchhhhcceeccccCceEEE
Confidence 556777762 4577777666533223434455555555555555431 01 12233 3323335556666666555555
Q ss_pred EeecccccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEe
Q 000545 1021 VSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTL 1100 (1432)
Q Consensus 1021 ~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l 1100 (1432)
+..+ .+.++|..+ -+ +.+.-..-||.++.|+.+
T Consensus 300 taeQ----------------------------------------nl~l~d~~~----l~-i~k~ivG~ndEI~Dm~~l-- 332 (775)
T KOG0319|consen 300 TAEQ----------------------------------------NLFLYDEDE----LT-IVKQIVGYNDEILDMKFL-- 332 (775)
T ss_pred Eccc----------------------------------------eEEEEEccc----cE-EehhhcCCchhheeeeec--
Confidence 4311 122333211 01 112223557888888865
Q ss_pred eecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEEeC--CeEE
Q 000545 1101 FNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIASG--PKII 1177 (1432)
Q Consensus 1101 ~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~-~g~Ll~~vg--~~l~ 1177 (1432)
++...|++|-|. .+++.+|+... ..-++++ -.+..|.+|..+ .|-|++..+ ++++
T Consensus 333 -----G~e~~~laVATN---------s~~lr~y~~~~------~~c~ii~--GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 333 -----GPEESHLAVATN---------SPELRLYTLPT------SYCQIIP--GHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred -----CCccceEEEEeC---------CCceEEEecCC------CceEEEe--CchhheeeeeecccCcEEEEecCCceEE
Confidence 235689999994 78888885532 1233332 356788888844 565666555 6899
Q ss_pred EEEccC
Q 000545 1178 LHKWTG 1183 (1432)
Q Consensus 1178 v~~~~~ 1183 (1432)
+|++++
T Consensus 391 lWr~~~ 396 (775)
T KOG0319|consen 391 LWRLNN 396 (775)
T ss_pred EEEecC
Confidence 999954
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.76 E-value=4.3 Score=51.53 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=110.1
Q ss_pred CCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-
Q 000545 1086 MQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL- 1164 (1432)
Q Consensus 1086 l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~- 1164 (1432)
|.-++.|+|++ |.. -+..||+=|. --|++.+|.|.+ -+.++..+++.-|||+|-.
T Consensus 406 F~HndfVTcVa---FnP----vDDryFiSGS---------LD~KvRiWsI~d--------~~Vv~W~Dl~~lITAvcy~P 461 (712)
T KOG0283|consen 406 FSHNDFVTCVA---FNP----VDDRYFISGS---------LDGKVRLWSISD--------KKVVDWNDLRDLITAVCYSP 461 (712)
T ss_pred EecCCeeEEEE---ecc----cCCCcEeecc---------cccceEEeecCc--------CeeEeehhhhhhheeEEecc
Confidence 34577888886 431 2468999887 589999999964 5778899999999999944
Q ss_pred cC--eEEEEeCCeEEEEEccCCeeeeEEeecC------CCeeEEEEEEe---CCEEEEEeccccEEEEEEecccCEEEEe
Q 000545 1165 QG--HLLIASGPKIILHKWTGTELNGIAFYDA------PPLYVVSLNIV---KNFILLGDIHKSIYFLSWKEQGAQLNLL 1233 (1432)
Q Consensus 1165 ~g--~Ll~~vg~~l~v~~~~~~~L~~~a~~~~------~~~~i~sl~~~---~n~IlvgD~~~Sv~ll~~~~~~~~l~~~ 1233 (1432)
+| -|+-..+..+++|.-.+.+|...-.+.. -+--||.+... .+.|+|.-.---|-++ +-.+..|+..
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~--d~~~~~lv~K 539 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY--DGRDKDLVHK 539 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE--eccchhhhhh
Confidence 23 3555567899999998876654322211 02257777764 3467777555555554 4445667666
Q ss_pred eeccCCc-cEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCC
Q 000545 1234 AKDFGSL-DCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMS 1275 (1432)
Q Consensus 1234 arD~~~~-~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~ 1275 (1432)
-+.+... .-..+.|..|+.. ||++-.+.++++.++++.+.
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~--IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKH--IVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred hcccccCCcceeeeEccCCCE--EEEeecCceEEEEeCCCCcc
Confidence 6666443 3356667777777 67777899999999876653
No 36
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.75 E-value=31 Score=40.24 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=46.3
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCc-eEEEcc-ccCeEEEEeCC---eEEEEEccC
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGA-ISALAS-LQGHLLIASGP---KIILHKWTG 1183 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~-V~al~~-~~g~Ll~~vg~---~l~v~~~~~ 1183 (1432)
..||.+. +++-| .|-+|.|.+.. .+|.++..+.+.|- +....- -.|++|++.|+ .|.+|+.++
T Consensus 255 GrFLYas---NRg~d-----sI~~f~V~~~~----g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 255 GRFLYAS---NRGHD-----SIAVFSVDPDG----GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEe---cCCCC-----eEEEEEEcCCC----CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 4677664 23322 78889998753 35899988888887 665441 24566666664 599999986
Q ss_pred C--eeeeEEe
Q 000545 1184 T--ELNGIAF 1191 (1432)
Q Consensus 1184 ~--~L~~~a~ 1191 (1432)
+ +|.....
T Consensus 323 ~TG~L~~~~~ 332 (346)
T COG2706 323 ETGRLTLLGR 332 (346)
T ss_pred CCceEEeccc
Confidence 5 3554433
No 37
>PTZ00420 coronin; Provisional
Probab=91.15 E-value=55 Score=41.87 Aligned_cols=154 Identities=13% Similarity=0.159 Sum_probs=82.3
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccCeEEEEe--CCeEEEEEccCCeeeeEE-eecC-CCeeEEE
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQGHLLIAS--GPKIILHKWTGTELNGIA-FYDA-PPLYVVS 1201 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~-~~g~Ll~~v--g~~l~v~~~~~~~L~~~a-~~~~-~~~~i~s 1201 (1432)
.|.|.+|++... . .++.....+.|++++- -+|.++++. +.+|+||++...+.+..- .... ....+..
T Consensus 147 DgtIrIWDl~tg-----~---~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~ 218 (568)
T PTZ00420 147 DSFVNIWDIENE-----K---RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW 218 (568)
T ss_pred CCeEEEEECCCC-----c---EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE
Confidence 689999998642 1 1222234577888873 367776654 578999999876544321 1111 0111111
Q ss_pred ---EEEeCCEEEEEecc----ccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCC
Q 000545 1202 ---LNIVKNFILLGDIH----KSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKM 1274 (1432)
Q Consensus 1202 ---l~~~~n~IlvgD~~----~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~ 1274 (1432)
+...+++|+.+-.- +.|.+...+....-+..+.-|..+-.++..-. -+.+.+ ++++-.+++|++|++...
T Consensus 219 ~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D-~~tg~l-~lsGkGD~tIr~~e~~~~- 295 (568)
T PTZ00420 219 IDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD-ESTGLI-YLIGKGDGNCRYYQHSLG- 295 (568)
T ss_pred eeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee-CCCCCE-EEEEECCCeEEEEEccCC-
Confidence 11244677764322 35666544432333444433443333333322 233344 788889999999997532
Q ss_pred CCCccCceEEEEEEEecCcceeEE
Q 000545 1275 SESWKGQKLLSRAEFHVGAHVTKF 1298 (1432)
Q Consensus 1275 ~~s~~~~kL~~~~~f~lg~~vt~~ 1298 (1432)
.+....+|+..+....+
T Consensus 296 -------~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 296 -------SIRKVNEYKSCSPFRSF 312 (568)
T ss_pred -------cEEeecccccCCCccce
Confidence 24445566655555444
No 38
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.80 E-value=3.8 Score=49.89 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=73.9
Q ss_pred cCeEEEEeCCeEEEEEccCCeee-eEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCE---EEEeeec--c-
Q 000545 1165 QGHLLIASGPKIILHKWTGTELN-GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQ---LNLLAKD--F- 1237 (1432)
Q Consensus 1165 ~g~Ll~~vg~~l~v~~~~~~~L~-~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~---l~~~arD--~- 1237 (1432)
.+.+++|+|..||=+.|++.+++ +-+.-.. +..+++|.....+|.+|.--..|-|. ++-... ...++.. .
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfw--DpR~ksrv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFW--DPRDKSRVGTLDAASSVNSH 222 (703)
T ss_pred ccEEEeecCcceEEEEccccccccccccccc-cceeeeecCccceEEecccCceEEEe--cchhhhhheeeecccccCCC
Confidence 35788999999999999888744 4444435 78889999999999999988877775 543221 1222222 1
Q ss_pred ----CCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCC
Q 000545 1238 ----GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1238 ----~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p 1272 (1432)
....||++.| .++-|.+.++-..|.+++|.+..
T Consensus 223 pg~~~~~svTal~F--~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 223 PGGDAAPSVTALKF--RDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred ccccccCcceEEEe--cCCceeEEeeccCCcEEEEEccc
Confidence 2345999998 44467799999999999998653
No 39
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.58 E-value=70 Score=42.17 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=99.9
Q ss_pred EEEEEEEeec--CceEEEccc------cCeEEEEe-----------CCeEEEEEccC-CeeeeEEeecCCCeeEEEEEEe
Q 000545 1146 VTEVYSKELK--GAISALASL------QGHLLIAS-----------GPKIILHKWTG-TELNGIAFYDAPPLYVVSLNIV 1205 (1432)
Q Consensus 1146 l~~v~~~~~~--g~V~al~~~------~g~Ll~~v-----------g~~l~v~~~~~-~~L~~~a~~~~~~~~i~sl~~~ 1205 (1432)
++.+|.++.. ..+.+|+.. +-++++|. ..+|+||++.+ ++|..++.... .-.+.+|...
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v-~Gav~aL~~f 838 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV-KGAVYALVEF 838 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee-ccceeehhhh
Confidence 7878777764 456666532 34777775 45689999987 78999999877 6778888889
Q ss_pred CCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEE
Q 000545 1206 KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLS 1285 (1432)
Q Consensus 1206 ~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~ 1285 (1432)
+.++++| +-.+|.+++|-.+ +.|..=++-. ..+++...-+.++. ++++|--+.+.+++|.++. ..+..
T Consensus 839 ngkllA~-In~~vrLye~t~~-~eLr~e~~~~--~~~~aL~l~v~gde--I~VgDlm~Sitll~y~~~e------g~f~e 906 (1096)
T KOG1897|consen 839 NGKLLAG-INQSVRLYEWTTE-RELRIECNIS--NPIIALDLQVKGDE--IAVGDLMRSITLLQYKGDE------GNFEE 906 (1096)
T ss_pred CCeEEEe-cCcEEEEEEcccc-ceehhhhccc--CCeEEEEEEecCcE--EEEeeccceEEEEEEeccC------CceEE
Confidence 9987665 7889999999653 3444333333 34566664467777 8999999999999997642 24677
Q ss_pred EEEEecCcceeEE
Q 000545 1286 RAEFHVGAHVTKF 1298 (1432)
Q Consensus 1286 ~~~f~lg~~vt~~ 1298 (1432)
+|....+.-.++.
T Consensus 907 vArD~~p~Wmtav 919 (1096)
T KOG1897|consen 907 VARDYNPNWMTAV 919 (1096)
T ss_pred eehhhCccceeeE
Confidence 7766666655554
No 40
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=90.07 E-value=10 Score=43.03 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=16.4
Q ss_pred ccEEEEEeeCCeEEEEEE
Q 000545 838 RPFLFAILTDGTILCYQA 855 (1432)
Q Consensus 838 ~~~L~vgl~~G~l~~y~~ 855 (1432)
.-||-+|..||.+++|.+
T Consensus 35 G~~lAvGc~nG~vvI~D~ 52 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDF 52 (405)
T ss_pred cceeeeeccCCcEEEEEc
Confidence 578999999999999996
No 41
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.95 E-value=4.1 Score=49.57 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEE-eecCceEEEccc---
Q 000545 1089 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALASL--- 1164 (1432)
Q Consensus 1089 ~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~-~~~g~V~al~~~--- 1164 (1432)
.+.++|++...+.-...+-...++.|||. .|.+++|.+.++.+. .+..+.+..+ ..+++|.+|+.|
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn---------~G~v~~fkIlp~~~g-~f~v~~~~~~~~~~~~i~~I~~i~~~ 204 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTN---------SGNVLTFKILPSSNG-RFSVQFAGATTNHDSPILSIIPINAD 204 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEET---------TSEEEEEEEEE-GGG--EEEEEEEEE--SS----EEEEEETT
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeC---------CCCEEEEEEecCCCC-ceEEEEeeccccCCCceEEEEEEECC
Confidence 34455554433332112225689999994 799999999874332 2335666665 567888888877
Q ss_pred ---------------------cCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEE
Q 000545 1165 ---------------------QGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSL 1202 (1432)
Q Consensus 1165 ---------------------~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl 1202 (1432)
+|+++++.-..+++|.....+..-+.| +. +.....+
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~-~~~~~~~ 261 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DD-PFLCSSA 261 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS--EEEEEE
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-cc-ccccceE
Confidence 257888888999999998877777777 44 4443333
No 42
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=89.82 E-value=4.9 Score=49.17 Aligned_cols=250 Identities=12% Similarity=0.187 Sum_probs=132.7
Q ss_pred EecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEEEeecccccccccccccccccccccccCCCCCc
Q 000545 973 TSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSS 1052 (1432)
Q Consensus 973 ~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 1052 (1432)
..+|++||-.+-... -+++ +.+..-.+.|++.|..+..+++.... .+-++.+....+..+....
T Consensus 419 sdDGtvriWEi~TgR------cvr~-~~~d~~I~~vaw~P~~~~~vLAvA~~---~~~~ivnp~~G~~~e~~~t------ 482 (733)
T KOG0650|consen 419 SDDGTVRIWEIATGR------CVRT-VQFDSEIRSVAWNPLSDLCVLAVAVG---ECVLIVNPIFGDRLEVGPT------ 482 (733)
T ss_pred CCCCcEEEEEeecce------EEEE-EeecceeEEEEecCCCCceeEEEEec---CceEEeCccccchhhhcch------
Confidence 346889998888765 4788 99999999999999888777765532 1211211111111110000
Q ss_pred cccc-cccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeec---CCCCcceEEEEEeeeecCCCcccce
Q 000545 1053 VDLH-RTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNT---TTKENETLLAIGTAYVQGEDVAARG 1128 (1432)
Q Consensus 1053 ~~~~-~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~---~~~~~~~~lvVGT~~~~~e~~~~~G 1128 (1432)
.+++ ..+....--.++ .+|..-+ +++.|...|+.+.-+++- +=+.+..||++=.+ ....-
T Consensus 483 ~ell~~~~~~~~p~~~~-------~~W~~~~---~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~------~~~~~ 546 (733)
T KOG0650|consen 483 KELLASAPNESEPDAAV-------VTWSRAS---LDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP------DSGNK 546 (733)
T ss_pred hhhhhcCCCccCCcccc-------eeechhh---hhhhccceEEEEecCCccceeeeecCCceEEEecc------CCCcc
Confidence 0100 000000000001 2454422 233444445443333211 11334577765432 12345
Q ss_pred eEEEEEEeecCCCCCccEEEEEEEeecCceEEEc--cccCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEE--
Q 000545 1129 RVLLFSTGRNADNPQNLVTEVYSKELKGAISALA--SLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNI-- 1204 (1432)
Q Consensus 1129 ri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~--~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~-- 1204 (1432)
+++++++.+.... .--...+|-|.++. +..-+|++|.-..|+||+|-+.+|+++..... -.|.++.+
T Consensus 547 ~VliHQLSK~~sQ-------~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~--kwiS~msihp 617 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQ-------SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS--KWISSMSIHP 617 (733)
T ss_pred eEEEEeccccccc-------CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC--eeeeeeeecC
Confidence 7889998763211 11112456666654 45668999999999999998876666543322 34555544
Q ss_pred eCCEEEEEeccccEEEEEEecc--cCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1205 VKNFILLGDIHKSIYFLSWKEQ--GAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1205 ~~n~IlvgD~~~Sv~ll~~~~~--~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
.|+-+++|-.-+-+..+-.+-. +++.. -++...++++.|-....- |..+-.+|.++||-
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~l----r~H~~avr~Va~H~ryPL--fas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTL----RLHEKAVRSVAFHKRYPL--FASGSDDGTVIVFH 678 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHh----hhhhhhhhhhhhccccce--eeeecCCCcEEEEe
Confidence 4678888877776655543322 22111 123445777776544443 55666667777764
No 43
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=89.73 E-value=33 Score=39.24 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=61.0
Q ss_pred EEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEE--EecccCEEEEeeecc----CCccEE
Q 000545 1170 IASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLS--WKEQGAQLNLLAKDF----GSLDCF 1243 (1432)
Q Consensus 1170 ~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~--~~~~~~~l~~~arD~----~~~~vt 1243 (1432)
|+.+.+|.+|++.+.-|.-+-...+ ..|-..++..|-||++.-.---|.+.. |. .++.+.++.|=+ +.--|+
T Consensus 205 as~dt~i~lw~lkGq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~-kdG~fqev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 205 ASLDTKICLWDLKGQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT-KDGTFQEVKRVFSLKGHQSAVL 282 (420)
T ss_pred ecCCCcEEEEecCCceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEec-cCcchhhhhhhheeccchhhee
Confidence 5567788888887554444444444 445555666677777765554444443 32 245555555543 455789
Q ss_pred EEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1244 ATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1244 a~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
+.+|--+... ++..-++|.+.++..+
T Consensus 283 ~~aFsn~S~r--~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 283 AAAFSNSSTR--AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeeeCCCcce--eEEEecCCcEEEeecc
Confidence 9998444444 7888999999998643
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.67 E-value=71 Score=40.80 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=22.0
Q ss_pred ecCceEEEccc-cCeEEEEeC--CeEEEEEccCCe
Q 000545 1154 LKGAISALASL-QGHLLIASG--PKIILHKWTGTE 1185 (1432)
Q Consensus 1154 ~~g~V~al~~~-~g~Ll~~vg--~~l~v~~~~~~~ 1185 (1432)
.-+-|.|++.. +|..+++.+ ..|++|+.++..
T Consensus 633 H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 633 HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred chheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 45677887765 565555554 589999988754
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.55 E-value=71 Score=40.67 Aligned_cols=178 Identities=14% Similarity=0.135 Sum_probs=101.5
Q ss_pred ceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCC
Q 000545 1062 EEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADN 1141 (1432)
Q Consensus 1062 ~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~ 1141 (1432)
+.+.+|..++. +|..+..-.-.+.|.+.-+..+. ....+++|-+ .-.|++|+..+
T Consensus 258 ~~g~~~~~d~e----s~~~~~~~~~~~~~e~~~~~~~~-------~~~~~l~vta----------eQnl~l~d~~~---- 312 (775)
T KOG0319|consen 258 GSGVVQYWDSE----SGKCVYKQRQSDSEEIDHLLAIE-------SMSQLLLVTA----------EQNLFLYDEDE---- 312 (775)
T ss_pred CCceEEEEecc----cchhhhhhccCCchhhhcceecc-------ccCceEEEEc----------cceEEEEEccc----
Confidence 34566777763 44544332333344433222211 2345666654 34566775432
Q ss_pred CCccEEEEEE-EeecCceEEEcccc---CeEEEEeC-CeEEEEEccCCeeeeEEeecCCCeeEEEEE--EeCCEEEEEec
Q 000545 1142 PQNLVTEVYS-KELKGAISALASLQ---GHLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLN--IVKNFILLGDI 1214 (1432)
Q Consensus 1142 ~~~~l~~v~~-~~~~g~V~al~~~~---g~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~--~~~n~IlvgD~ 1214 (1432)
++++-. --..+-|+.|+-++ .+|++|.| ..+++|+...-.-. .+...--.|.|+. ..+.+|+-|--
T Consensus 313 ----l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 313 ----LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred ----cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecC
Confidence 433322 12456788888666 68999998 57999976543211 2222122355666 34668888888
Q ss_pred cccEEEEEEecccCEEEEeeec-cCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCC
Q 000545 1215 HKSIYFLSWKEQGAQLNLLAKD-FGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1215 ~~Sv~ll~~~~~~~~l~~~arD-~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p 1272 (1432)
-+|+-|.+++....++..+|.- .+...|+++.+-..+-+. |+.+-.++-|-+..++.
T Consensus 386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf-fvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF-FVSVSQDCTLKLWDLPK 443 (775)
T ss_pred CceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE-EEEecCCceEEEecCCC
Confidence 8999999996555556556553 456678888863333342 55556677776666543
No 46
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.43 E-value=44 Score=38.15 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=51.9
Q ss_pred cC-eEEEEe--CCeEEEEEccCCeeee-EEee-----cCCCeeEEE--EEEeCCEEEEEecc-ccEEEEEEecccCEEEE
Q 000545 1165 QG-HLLIAS--GPKIILHKWTGTELNG-IAFY-----DAPPLYVVS--LNIVKNFILLGDIH-KSIYFLSWKEQGAQLNL 1232 (1432)
Q Consensus 1165 ~g-~Ll~~v--g~~l~v~~~~~~~L~~-~a~~-----~~~~~~i~s--l~~~~n~IlvgD~~-~Sv~ll~~~~~~~~l~~ 1232 (1432)
+| +|+++. +++|++|++...+... ..+. .. ...... +...+++++++..- ..+. .|+.+..++..
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~--v~d~~~~~~~~ 243 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVA--VVDAKTYEVLD 243 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEE--EEECCCCcEEE
Confidence 45 454443 5789999998655432 1111 01 111122 33446676665432 3344 44655555443
Q ss_pred eeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEee
Q 000545 1233 LAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1233 ~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
... ....+.++.|-.++..| ++++..+|.|.+++.
T Consensus 244 ~~~--~~~~~~~~~~~~~g~~l-~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 244 YLL--VGQRVWQLAFTPDEKYL-LTTNGVSNDVSVIDV 278 (300)
T ss_pred EEE--eCCCcceEEECCCCCEE-EEEcCCCCeEEEEEC
Confidence 221 22346677765566663 333456899999874
No 47
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.97 E-value=4.7 Score=47.05 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=79.8
Q ss_pred ecCceEEEccccCeEEEEeC-CeEEEEEcc-----CCeeeeEEeecCCCeeEEEEEE-eCCEEEEEeccccEEEEEEecc
Q 000545 1154 LKGAISALASLQGHLLIASG-PKIILHKWT-----GTELNGIAFYDAPPLYVVSLNI-VKNFILLGDIHKSIYFLSWKEQ 1226 (1432)
Q Consensus 1154 ~~g~V~al~~~~g~Ll~~vg-~~l~v~~~~-----~~~L~~~a~~~~~~~~i~sl~~-~~n~IlvgD~~~Sv~ll~~~~~ 1226 (1432)
-.++|-.+...+|.|+.|++ ..+.+|... .++|...+.... .+.+.-.. .+++++.|=..+=.-+=-|+.+
T Consensus 104 ~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g--~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 104 GTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPG--LYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred ccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCc--eeeeccCCCCCceEecCchhcccceeeeecc
Confidence 46788888999999999988 578899887 455666665432 33332222 2344444443321111123333
Q ss_pred cCEEEEeeec--------cCCccEEEEEEEEc--CCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCccee
Q 000545 1227 GAQLNLLAKD--------FGSLDCFATEFLID--GSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVT 1296 (1432)
Q Consensus 1227 ~~~l~~~arD--------~~~~~vta~~fl~d--~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt 1296 (1432)
..+=+.-|+. ..|.|.+++.|+-. ... |+.+-+.+-+++|. +... -.++++|-+.+.+.
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~--fat~T~~hqvR~YD--t~~q-------RRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYK--FATITRYHQVRLYD--TRHQ-------RRPVAQFDFLENPI 250 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCce--EEEEecceeEEEec--Cccc-------CcceeEeccccCcc
Confidence 3333334443 25889999999544 344 89999999999985 3221 13567777777665
Q ss_pred EEE
Q 000545 1297 KFL 1299 (1432)
Q Consensus 1297 ~~~ 1299 (1432)
+..
T Consensus 251 s~~ 253 (412)
T KOG3881|consen 251 SST 253 (412)
T ss_pred eee
Confidence 443
No 48
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=88.84 E-value=65 Score=39.23 Aligned_cols=157 Identities=16% Similarity=0.210 Sum_probs=91.4
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc-cccCe
Q 000545 1089 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA-SLQGH 1167 (1432)
Q Consensus 1089 ~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~-~~~g~ 1167 (1432)
||.+.+|+. . ..-.||+||+ -.+.||+|+|+.+. ++++.+-+... .|+++|. +.++.
T Consensus 447 ~~~ls~v~y---s-----p~G~~lAvgs---------~d~~iyiy~Vs~~g----~~y~r~~k~~g-s~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 447 NEQLSVVRY---S-----PDGAFLAVGS---------HDNHIYIYRVSANG----RKYSRVGKCSG-SPITHLDWSSDSQ 504 (626)
T ss_pred CCceEEEEE---c-----CCCCEEEEec---------CCCeEEEEEECCCC----cEEEEeeeecC-ceeEEeeecCCCc
Confidence 888877753 2 2458999998 47899999998752 34665555555 8888887 34565
Q ss_pred EEEEeC--CeEEEEEccC-Ceeee------------EEeecC---C--CeeEEEEEEeCCEEEEEeccccEEEEEEeccc
Q 000545 1168 LLIASG--PKIILHKWTG-TELNG------------IAFYDA---P--PLYVVSLNIVKNFILLGDIHKSIYFLSWKEQG 1227 (1432)
Q Consensus 1168 Ll~~vg--~~l~v~~~~~-~~L~~------------~a~~~~---~--~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~ 1227 (1432)
.+.+.. -.|..|.-.. ++... ..|.-. - -..+++-.-.++.+..||..--|.+++|-=..
T Consensus 505 ~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 505 FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC
Confidence 555543 3444453222 11111 111100 0 01111111236789999999999999984221
Q ss_pred CEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1228 AQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1228 ~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
-+--..-.--+.+.|+++.|+-++.. ++.+-++-.|+..+
T Consensus 585 ~rA~~he~~ghs~~vt~V~Fl~~d~~--li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 585 PRAPSHEYGGHSSHVTNVAFLCKDSH--LISTGKDTSIMQWR 624 (626)
T ss_pred CcccceeeccccceeEEEEEeeCCce--EEecCCCceEEEEE
Confidence 11111112235678999999655555 45555877776654
No 49
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.45 E-value=58 Score=38.21 Aligned_cols=168 Identities=13% Similarity=0.195 Sum_probs=100.7
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc
Q 000545 1065 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN 1144 (1432)
Q Consensus 1065 ~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 1144 (1432)
.+++++-+ .-.++..+.|.. ++-.|++. +.-+||.- .+.||+|+|..
T Consensus 69 ~Lkv~~~K----k~~~ICe~~fpt-----~IL~VrmN-------r~RLvV~L----------ee~IyIydI~~------- 115 (391)
T KOG2110|consen 69 KLKVVHFK----KKTTICEIFFPT-----SILAVRMN-------RKRLVVCL----------EESIYIYDIKD------- 115 (391)
T ss_pred eEEEEEcc----cCceEEEEecCC-----ceEEEEEc-------cceEEEEE----------cccEEEEeccc-------
Confidence 56677653 224567666653 34444553 34444442 56699999964
Q ss_pred cEEEEEEEeec-Cc---eEEEccccC--eEEEEe---CCeEEEEEccCCeeeeEEeecCC--CeeEEEEEEeCCEEEEEe
Q 000545 1145 LVTEVYSKELK-GA---ISALASLQG--HLLIAS---GPKIILHKWTGTELNGIAFYDAP--PLYVVSLNIVKNFILLGD 1213 (1432)
Q Consensus 1145 ~l~~v~~~~~~-g~---V~al~~~~g--~Ll~~v---g~~l~v~~~~~~~L~~~a~~~~~--~~~i~sl~~~~n~IlvgD 1213 (1432)
+|++|.-+.- -- +.|+..-++ +|..-. ...|++|+... |.++..++.. +.-+......|.+|.-+-
T Consensus 116 -MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~aH~~~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 116 -MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTINAHKGPLAALAFSPDGTLLATAS 192 (391)
T ss_pred -ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEEecCCceeEEEECCCCCEEEEec
Confidence 7777775543 33 444443333 565442 24678888754 3444443321 444444445566665443
Q ss_pred ccccEEEEEE-ecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1214 IHKSIYFLSW-KEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1214 ~~~Sv~ll~~-~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
- ||-.+=.| -++..++.++=|-..+..+++..|--|... +.++-..+.+++|++.
T Consensus 193 e-KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~--L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 193 E-KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF--LAASSNTETVHIFKLE 248 (391)
T ss_pred c-CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe--EEEecCCCeEEEEEec
Confidence 3 23222223 366778999999999999999998555443 6777789999999874
No 50
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=88.21 E-value=7.9 Score=42.59 Aligned_cols=134 Identities=20% Similarity=0.208 Sum_probs=91.4
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cC-eEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEE--E
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QG-HLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVS--L 1202 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~-~g-~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~s--l 1202 (1432)
.|-+.+|++.. -+.+++.+++.+|+++.-. .| +|..+-|+.|..|+... |-..-.+++ |.-|.+ |
T Consensus 164 d~tVRLWD~rT--------gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks--f~~lKs~k~-P~nV~SASL 232 (334)
T KOG0278|consen 164 DKTVRLWDHRT--------GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS--FGLLKSYKM-PCNVESASL 232 (334)
T ss_pred CCceEEEEecc--------CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc--ccceeeccC-ccccccccc
Confidence 45677888753 3457788899999999854 34 56688899999887654 334445777 777775 5
Q ss_pred EEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCC
Q 000545 1203 NIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMS 1275 (1432)
Q Consensus 1203 ~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~ 1275 (1432)
...+++.++|--+ .++++|+...+.=+..-.--++-.|-|+.|-.|+.. +..+-.+|.|++.+..|.+.
T Consensus 233 ~P~k~~fVaGged--~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~--yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 233 HPKKEFFVAGGED--FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL--YASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCceEEecCcc--eEEEEEeccCCceeeecccCCCCceEEEEECCCCce--eeccCCCceEEEEEecCCCc
Confidence 5667787887433 456666654332111111234556889998777765 78888999999999887654
No 51
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.19 E-value=55 Score=37.62 Aligned_cols=197 Identities=11% Similarity=0.071 Sum_probs=108.4
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc
Q 000545 1065 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN 1144 (1432)
Q Consensus 1065 ~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 1144 (1432)
.|-+.+. ..|+.++++.=-.+- |+-+.+ .. ..+--|.||+ -+.|.+|.+......--.
T Consensus 108 ~i~iw~~----~~W~~~~slK~H~~~-Vt~lsi---HP----S~KLALsVg~----------D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 108 HIIIWRV----GSWELLKSLKAHKGQ-VTDLSI---HP----SGKLALSVGG----------DQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred cEEEEEc----CCeEEeeeecccccc-cceeEe---cC----CCceEEEEcC----------CceeeeehhhcCccceee
Confidence 4445553 478888766544443 443332 21 2345666775 567778877753221000
Q ss_pred cEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEE-eCCEEEEEeccccEEEEEE
Q 000545 1145 LVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNI-VKNFILLGDIHKSIYFLSW 1223 (1432)
Q Consensus 1145 ~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~-~~n~IlvgD~~~Sv~ll~~ 1223 (1432)
+|+....- |.-. .=..++++.+-++|-+|+++.-++.+.-. . |.-+.++.. .++.++||=--+-+.+ +
T Consensus 166 ~L~~~at~-----v~w~-~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~--~-~~r~l~~~~l~~~~L~vG~d~~~i~~--~ 234 (362)
T KOG0294|consen 166 NLKNKATL-----VSWS-PQGDHFVVSGRNKIDIYQLDNASVFREIE--N-PKRILCATFLDGSELLVGGDNEWISL--K 234 (362)
T ss_pred ccCCccee-----eEEc-CCCCEEEEEeccEEEEEecccHhHhhhhh--c-cccceeeeecCCceEEEecCCceEEE--e
Confidence 12211110 2221 22457889999999999999766443222 2 333444443 2567777633344444 3
Q ss_pred ecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEE
Q 000545 1224 KEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR 1300 (1432)
Q Consensus 1224 ~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~ 1300 (1432)
+.+. ......=+-++.-|-++.+..+...-+++.+-.+|-|.|...+-+. ..+-...+++++|..+||+.-
T Consensus 235 D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~-----k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 235 DTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET-----KKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred ccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc-----cCCcceeEEeecCCccceeee
Confidence 4332 1111122334555666665444332237778889999998765432 234467899999999999874
No 52
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.13 E-value=37 Score=40.81 Aligned_cols=136 Identities=15% Similarity=0.251 Sum_probs=78.0
Q ss_pred CccEEEEEeeCCeEEEEEEeecCCCCCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCCCCCCCCccceEE
Q 000545 837 SRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITI 916 (1432)
Q Consensus 837 ~~~~L~vgl~~G~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rF~k~~~~~~~~~~~~~~lg~~~v~~ 916 (1432)
..|.|+++=-||.+-+|++ ++.. +.+...++|.+.|. ..
T Consensus 224 ~~plllvaG~d~~lrifqv---DGk~---------------------N~~lqS~~l~~fPi-----------------~~ 262 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQV---DGKV---------------------NPKLQSIHLEKFPI-----------------QK 262 (514)
T ss_pred CCceEEEecCCCcEEEEEe---cCcc---------------------ChhheeeeeccCcc-----------------ce
Confidence 3566666667999999997 3311 12334556765443 21
Q ss_pred ee-ccCCceEEEEeCCCceEEEEe---CCceEEeeccCCCceEEEeeccCCCCCceEEEEEe-cCeEEEEEcCCCCccCC
Q 000545 917 FK-NISGHQGFFLSGSRPCWCMVF---RERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTS-QGILKICQLPSGSTYDN 991 (1432)
Q Consensus 917 f~-~~~g~~~Vf~~g~rP~~i~~~---~~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i~~~~-~~~L~I~~l~~~~~~d~ 991 (1432)
.. ..+|+..||+.|.|+++-.++ ...-.++|+... +-.++-.|.-..|.+ ||++.. +|-+.+...-..
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~-e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~----- 335 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV-EEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTK----- 335 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCc-ccchhheeEecCCCC-eEEEcccCceEEeehhhhh-----
Confidence 11 135777899999999554443 233444555332 222444553333333 565553 333444443322
Q ss_pred CcceEEEeeCCCcccEEEEeCCCCeEEEEEe
Q 000545 992 YWPVQKVIPLKATPHQITYFAEKNLYPLIVS 1022 (1432)
Q Consensus 992 ~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s 1022 (1432)
-.+.. +.+....+-++++.+++.+++++.
T Consensus 336 -eli~s-~KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 336 -ELITS-FKIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred -hhhhe-eeeccEEeeEEEecCCcEEEEEcC
Confidence 25566 888889999999988877777654
No 53
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.34 E-value=81 Score=38.66 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=111.8
Q ss_pred EEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--c----cC
Q 000545 1093 LTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--L----QG 1166 (1432)
Q Consensus 1093 ~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~--~----~g 1166 (1432)
-|+++..+.+ ...++..|+||. -.|+|.+|+-..+.- .--.++.+++.+.||..|.. | +.
T Consensus 23 ~~l~v~~~~~--~~~~~d~IivGS---------~~G~LrIy~P~~~~~---~~~~lllE~~l~~PILqv~~G~F~s~~~~ 88 (418)
T PF14727_consen 23 GSLCVGNLDN--SPSGSDKIIVGS---------YSGILRIYDPSGNEF---QPEDLLLETQLKDPILQVECGKFVSGSED 88 (418)
T ss_pred ceEEEEcccC--CCCCccEEEEec---------cccEEEEEccCCCCC---CCccEEEEEecCCcEEEEEeccccCCCCc
Confidence 3666666653 223578999997 589999998743211 11367888999999999874 3 12
Q ss_pred e-EEEEeCCeEEEEEccC---C-------eeeeEEeecCCCeeEEEEEE------e-CCEEEEEeccccEEEEEEecccC
Q 000545 1167 H-LLIASGPKIILHKWTG---T-------ELNGIAFYDAPPLYVVSLNI------V-KNFILLGDIHKSIYFLSWKEQGA 1228 (1432)
Q Consensus 1167 ~-Ll~~vg~~l~v~~~~~---~-------~L~~~a~~~~~~~~i~sl~~------~-~n~IlvgD~~~Sv~ll~~~~~~~ 1228 (1432)
. |++=-=+||.||.+.. . +|...-.... +-..-++.+ . .++|.|=.+--.++|+. .+.-
T Consensus 89 ~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe--qe~~ 165 (418)
T PF14727_consen 89 LQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE--QESF 165 (418)
T ss_pred ceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEe--CCcE
Confidence 2 3333347899999931 1 2333333333 333333332 1 36777766666666653 2222
Q ss_pred EEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCc-------------cCceEEEEEEEecCcce
Q 000545 1229 QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESW-------------KGQKLLSRAEFHVGAHV 1295 (1432)
Q Consensus 1229 ~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~-------------~~~kL~~~~~f~lg~~v 1295 (1432)
.|...=-++ .--....|.-.-+. |+.+-....|-.|+|.--...+. .+.++...=.|.+||.+
T Consensus 166 ~f~~~lp~~--llPgPl~Y~~~tDs--fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~ 241 (418)
T PF14727_consen 166 AFSRFLPDF--LLPGPLCYCPRTDS--FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA 241 (418)
T ss_pred EEEEEcCCC--CCCcCeEEeecCCE--EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee
Confidence 332222231 11223344333345 78888888999998853222211 46788888899999999
Q ss_pred eEEEEEe
Q 000545 1296 TKFLRLQ 1302 (1432)
Q Consensus 1296 t~~~~~~ 1302 (1432)
..+.-.+
T Consensus 242 l~i~v~~ 248 (418)
T PF14727_consen 242 LDIQVVR 248 (418)
T ss_pred EEEEEEE
Confidence 8887654
No 54
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=87.06 E-value=10 Score=42.74 Aligned_cols=152 Identities=13% Similarity=0.166 Sum_probs=98.1
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc------cCeEEEEeCCeEEEEE
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL------QGHLLIASGPKIILHK 1180 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~------~g~Ll~~vg~~l~v~~ 1180 (1432)
..+.+|+||+-. +..+-+|.+..++++.. .+.....++...|++.+--. .-.|||..|..|++|+
T Consensus 57 ~~~~rla~gS~~-----Ee~~Nkvqiv~ld~~s~----e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWr 127 (364)
T KOG0290|consen 57 DKKFRLAVGSFI-----EEYNNKVQIVQLDEDSG----ELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWR 127 (364)
T ss_pred CcceeEEEeeec-----cccCCeeEEEEEccCCC----ceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEe
Confidence 467899999854 23457888888875421 24444456788899888743 2269999999999999
Q ss_pred cc--CCeeeeEEeecC-----CCeeEEEEE---EeCCEEEEEeccccEEEEEEecc-c--CEEEEeeeccCCccEEEEEE
Q 000545 1181 WT--GTELNGIAFYDA-----PPLYVVSLN---IVKNFILLGDIHKSIYFLSWKEQ-G--AQLNLLAKDFGSLDCFATEF 1247 (1432)
Q Consensus 1181 ~~--~~~L~~~a~~~~-----~~~~i~sl~---~~~n~IlvgD~~~Sv~ll~~~~~-~--~~l~~~arD~~~~~vta~~f 1247 (1432)
.+ +.++...+.+.. ++..++|-. +..++|.+.-+-.-.++...... . -+-.++|.| ..|..++|
T Consensus 128 i~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD---KEV~DIaf 204 (364)
T KOG0290|consen 128 IGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD---KEVYDIAF 204 (364)
T ss_pred ccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC---cceeEEEe
Confidence 98 444444333211 233444432 23467777666666666543322 1 155677766 67999998
Q ss_pred EEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1248 LIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1248 l~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
+-+...+ |+..-.+|.+++|.+.
T Consensus 205 ~~~s~~~-FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 205 LKGSRDV-FASVGADGSVRMFDLR 227 (364)
T ss_pred ccCccce-EEEecCCCcEEEEEec
Confidence 5544444 7778889999999753
No 55
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=86.96 E-value=3.5 Score=49.14 Aligned_cols=116 Identities=16% Similarity=0.238 Sum_probs=77.1
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC--CeEEEEEccCCeeeeEEeecCCCeeEEEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLN 1203 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~ 1203 (1432)
..|-+.+|++.-. .|.......|+-+..|.+ +++.|..|++.|| .||++|+...+++...--+++ |...+...
T Consensus 185 d~G~VtlwDv~g~--sp~~~~~~~HsAP~~gic--fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-Plstvaf~ 259 (673)
T KOG4378|consen 185 DKGAVTLWDVQGM--SPIFHASEAHSAPCRGIC--FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-PLSTVAFS 259 (673)
T ss_pred cCCeEEEEeccCC--CcccchhhhccCCcCcce--ecCCccceEEEecccceEEEeecccccccceeeecC-Ccceeeec
Confidence 5899999999632 122334456665555543 4477899999998 799999999887777667788 77777777
Q ss_pred EeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEE
Q 000545 1204 IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFL 1248 (1432)
Q Consensus 1204 ~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl 1248 (1432)
-.|-++++|...--|.++-.+..+.-+.. +..+...|+++.|.
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v--~sah~~sVt~vafq 302 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKAPVAV--RSAHDASVTRVAFQ 302 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCCCceE--eeecccceeEEEee
Confidence 77778888888777666544332222222 22233448888773
No 56
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=86.95 E-value=23 Score=34.66 Aligned_cols=92 Identities=15% Similarity=0.277 Sum_probs=57.7
Q ss_pred EEEEecCcEEEEcCCcceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCccccC
Q 000545 623 VIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIES 702 (1432)
Q Consensus 623 ivQVt~~~irli~~~~~~~~~~~~~~~~~~~~~~~~~~I~~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~ 702 (1432)
+|==....||+++.+..+.++.-. +.-+.-+.+...+.+-++++|+|-+|.... ..-.+.
T Consensus 19 lvGs~D~~IRvf~~~e~~~Ei~e~-----------~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiK------- 78 (111)
T PF14783_consen 19 LVGSDDFEIRVFKGDEIVAEITET-----------DKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIK------- 78 (111)
T ss_pred EEecCCcEEEEEeCCcEEEEEecc-----------cceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeec-------
Confidence 333345678888877666666552 222444556677888899999999986532 111211
Q ss_pred CCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeEEE
Q 000545 703 SKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEI 765 (1432)
Q Consensus 703 ~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I 765 (1432)
..+++.|+..|+-.+ +...=+++||+||.|.+
T Consensus 79 SK~~~~~~~~~D~~g-------------------------------dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 79 SKNQVTSMAFYDING-------------------------------DGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCeEEEEEEcCCC-------------------------------CCceEEEEEecCCeEEe
Confidence 245578887765431 12346788999999875
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=86.76 E-value=10 Score=43.89 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=87.1
Q ss_pred eEEEEEEeecCCCCCccEEEEEEEeecCceEEEc-cccCeEEEEeC--CeEEEEEccCCeeeeEEeecCCCeeEEEEEE-
Q 000545 1129 RVLLFSTGRNADNPQNLVTEVYSKELKGAISALA-SLQGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNI- 1204 (1432)
Q Consensus 1129 ri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~-~~~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~- 1204 (1432)
+-++|++... +. ..-.+..|..|+++. .+.|-+||.-+ .+|+||+...+....+....+ .-|.-+.-
T Consensus 87 ~AflW~~~~g----e~---~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--~dieWl~WH 157 (399)
T KOG0296|consen 87 LAFLWDISTG----EF---AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--EDIEWLKWH 157 (399)
T ss_pred eEEEEEccCC----cc---eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc--CceEEEEec
Confidence 3467787653 11 122266889999977 45787777644 899999998876655554322 22333333
Q ss_pred -eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1205 -VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1205 -~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
....++.|+---|+|+++...+ .....++- +...|++-+|+.|+.. ++.++.+|.|.++.
T Consensus 158 p~a~illAG~~DGsvWmw~ip~~-~~~kv~~G--h~~~ct~G~f~pdGKr--~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSG--HNSPCTCGEFIPDGKR--ILTGYDDGTIIVWN 218 (399)
T ss_pred ccccEEEeecCCCcEEEEECCCc-ceeeEecC--CCCCcccccccCCCce--EEEEecCceEEEEe
Confidence 4678899999999999865433 33333333 5567999999889888 78888899999986
No 58
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.58 E-value=26 Score=39.85 Aligned_cols=136 Identities=10% Similarity=0.139 Sum_probs=92.7
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeE--EEEeC---CeEEEEEccCCeeeeEEeecCCCeeEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHL--LIASG---PKIILHKWTGTELNGIAFYDAPPLYVV 1200 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~L--l~~vg---~~l~v~~~~~~~L~~~a~~~~~~~~i~ 1200 (1432)
+.|.+.+|++..+ ....+. ..++||.++.-++|++ +.+.| .+|..|+.... .+++.+++ |--+-
T Consensus 92 ~Dk~~k~wDL~S~------Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~L-PeRvY 160 (347)
T KOG0647|consen 92 CDKQAKLWDLASG------QVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQL-PERVY 160 (347)
T ss_pred cCCceEEEEccCC------Ceeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCC--Ceeeeeec-cceee
Confidence 5788999999753 233333 3679999999998876 55555 57888877644 45666777 88888
Q ss_pred EEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCC
Q 000545 1201 SLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMS 1275 (1432)
Q Consensus 1201 sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~ 1275 (1432)
.+.+...+.+|+.+-++|.++..+..+..+-.+. .+-.-.+.|+...-|.+. ++.+--.|-+.+...++-++
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCc
Confidence 8999999999999999999987754333222111 122223335543345555 67788899999887766444
No 59
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.46 E-value=83 Score=36.93 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=91.1
Q ss_pred eeEEEEEEeecCCCCCccEEEEEEEee--cCceEEEc-cccCeEEE---EeCCeEEEEEccC--Ce---eeeE-----Ee
Q 000545 1128 GRVLLFSTGRNADNPQNLVTEVYSKEL--KGAISALA-SLQGHLLI---ASGPKIILHKWTG--TE---LNGI-----AF 1191 (1432)
Q Consensus 1128 Gri~vf~i~~~~~~~~~~l~~v~~~~~--~g~V~al~-~~~g~Ll~---~vg~~l~v~~~~~--~~---L~~~-----a~ 1191 (1432)
=||.+|++.+. +|+......+ ...+.-|. .=+|+++- =.+++|.+|+.+. .+ |... .|
T Consensus 167 Dri~~y~~~dg------~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 167 DRIFLYDLDDG------KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred ceEEEEEcccC------ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 48899999842 2222111111 22233333 22454433 3457888888875 23 3322 23
Q ss_pred ecCCCeeEEEEEEeCCEEEEEecc-ccEEEEEEecccCEEEEeeecc-CCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1192 YDAPPLYVVSLNIVKNFILLGDIH-KSIYFLSWKEQGAQLNLLAKDF-GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1192 ~~~~~~~i~sl~~~~n~IlvgD~~-~Sv~ll~~~~~~~~l~~~arD~-~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
...-..-...|+..|.|+++.+-. +|++.++.++..++|..++.-. .-++--...|--+++-| +++..+..||.+|+
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L-iaa~q~sd~i~vf~ 319 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL-IAANQKSDNITVFE 319 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE-EEEccCCCcEEEEE
Confidence 222123344555678899999865 5999999999999999887643 23334444432344454 67777889999999
Q ss_pred eCCCCCCCccCceEEEEEEEecCcceeE
Q 000545 1270 YAPKMSESWKGQKLLSRAEFHVGAHVTK 1297 (1432)
Q Consensus 1270 ~~p~~~~s~~~~kL~~~~~f~lg~~vt~ 1297 (1432)
.+++. -+|.....+-.+..++|
T Consensus 320 ~d~~T------G~L~~~~~~~~~p~Pvc 341 (346)
T COG2706 320 RDKET------GRLTLLGRYAVVPEPVC 341 (346)
T ss_pred EcCCC------ceEEecccccCCCCcEE
Confidence 98764 35666555433333333
No 60
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=85.12 E-value=16 Score=43.79 Aligned_cols=86 Identities=20% Similarity=0.199 Sum_probs=56.7
Q ss_pred eEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-C-eEEEE-eCCeEEEEEccCCee
Q 000545 1110 TLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-G-HLLIA-SGPKIILHKWTGTEL 1186 (1432)
Q Consensus 1110 ~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~-g-~Ll~~-vg~~l~v~~~~~~~L 1186 (1432)
+|++.++- .|=+|.+|++.+. .+++...-..|+|.||...+ | +|+++ +-.+||+|++...+|
T Consensus 51 ~yllsaq~--------~rp~l~vw~i~k~-------~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L 115 (476)
T KOG0646|consen 51 EYLLSAQL--------KRPLLHVWEILKK-------DQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL 115 (476)
T ss_pred hheeeecc--------cCccccccccCch-------hhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH
Confidence 56665553 3448888888652 33333455799999999985 4 56677 778999999998887
Q ss_pred eeEEeecCCCeeEEEEEEeCC--EEEEE
Q 000545 1187 NGIAFYDAPPLYVVSLNIVKN--FILLG 1212 (1432)
Q Consensus 1187 ~~~a~~~~~~~~i~sl~~~~n--~Ilvg 1212 (1432)
+.+- ... --.|++|+..+| .|+-|
T Consensus 116 L~v~-~aH-YQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 116 LNVL-SAH-YQSITCLKFSDDGSHIITG 141 (476)
T ss_pred HHHH-Hhh-ccceeEEEEeCCCcEEEec
Confidence 6543 222 334777776554 44444
No 61
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=84.79 E-value=8.2 Score=46.53 Aligned_cols=178 Identities=12% Similarity=0.122 Sum_probs=100.1
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEee---cCceEEEccc--cCeEE-EEe-CCeEEEEEccCCe-----eeeEEeecC
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKEL---KGAISALASL--QGHLL-IAS-GPKIILHKWTGTE-----LNGIAFYDA 1194 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~---~g~V~al~~~--~g~Ll-~~v-g~~l~v~~~~~~~-----L~~~a~~~~ 1194 (1432)
-|.+.+|++.... ..++++-.... +-+|++++ | .|.++ +|+ ...|.+|+.+... .++.|....
T Consensus 290 DgtlRiWdv~~~k----~q~qVik~k~~~g~Rv~~tsC~-~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 290 DGTLRIWDVNNTK----SQLQVIKTKPAGGKRVPVTSCA-WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred CCcEEEEecCCch----hheeEEeeccCCCcccCceeee-cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 6889999997531 12443333333 23666644 5 35544 444 4789999986532 444554432
Q ss_pred CCeeEEEEEE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEE------ecCCcEE
Q 000545 1195 PPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVS------DEQKNIQ 1266 (1432)
Q Consensus 1195 ~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~------D~~gNl~ 1266 (1432)
.-|++|.. .+|+++-----.++-+.-.+.-..-|.....=+.+...|.|+|-.|+ .| |+.+ +..|+|+
T Consensus 365 --~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kl-i~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 365 --QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KL-ILTGTSAPNGMTAGTLF 440 (641)
T ss_pred --CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eE-EEecccccCCCCCceEE
Confidence 45777664 45665543333455444333322333333333566678899986665 43 4443 5678898
Q ss_pred EEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEEeC
Q 000545 1267 IFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPL 1340 (1432)
Q Consensus 1267 vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~pl 1340 (1432)
+|. ...|+.+....+. -.+..++.+.|. -.+|+.|+.+|.+.++..=
T Consensus 441 f~d----------~~t~d~v~ki~i~--~aSvv~~~Whpk---------------LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 441 FFD----------RMTLDTVYKIDIS--TASVVRCLWHPK---------------LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EEe----------ccceeeEEEecCC--CceEEEEeecch---------------hhheeeecCCCceEEEECc
Confidence 885 2456666555443 223333444553 3578889999988776543
No 62
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=83.94 E-value=77 Score=38.63 Aligned_cols=121 Identities=15% Similarity=0.236 Sum_probs=75.1
Q ss_pred EccccCeEE-EEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCC
Q 000545 1161 LASLQGHLL-IASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGS 1239 (1432)
Q Consensus 1161 l~~~~g~Ll-~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~ 1239 (1432)
+.+.+..++ ++.-..+.+|. ++++.=--...- |......+..+ -|++|.. .+-||+ ++.+...|+.+-.|..+
T Consensus 376 ~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d-~~~~~~fhpsg-~va~Gt~-~G~w~V-~d~e~~~lv~~~~d~~~ 449 (626)
T KOG2106|consen 376 THPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED-PAECADFHPSG-VVAVGTA-TGRWFV-LDTETQDLVTIHTDNEQ 449 (626)
T ss_pred cCCChhheeeccCcceEEEcc--CCceeEEEEecC-ceeEeeccCcc-eEEEeec-cceEEE-EecccceeEEEEecCCc
Confidence 344445443 45556788888 544432222222 33333444455 6677765 455555 47778889988889444
Q ss_pred ccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000545 1240 LDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1298 (1432)
Q Consensus 1240 ~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~ 1298 (1432)
++++.|-.|+.. +.++-.++.|++|+.+.. |.++.+.+..+. ..|+.+
T Consensus 450 --ls~v~ysp~G~~--lAvgs~d~~iyiy~Vs~~------g~~y~r~~k~~g-s~ithL 497 (626)
T KOG2106|consen 450 --LSVVRYSPDGAF--LAVGSHDNHIYIYRVSAN------GRKYSRVGKCSG-SPITHL 497 (626)
T ss_pred --eEEEEEcCCCCE--EEEecCCCeEEEEEECCC------CcEEEEeeeecC-ceeEEe
Confidence 566667688888 788999999999997543 555555554444 766654
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.18 E-value=61 Score=40.50 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=102.1
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccCeEEEEeC--CeEEEEEccCCeeeeE-EeecCCCeeEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQGHLLIASG--PKIILHKWTGTELNGI-AFYDAPPLYVVS 1201 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~-~~g~Ll~~vg--~~l~v~~~~~~~L~~~-a~~~~~~~~i~s 1201 (1432)
..+.|.+|++... . ..++.+ ......|++++= -.|.++++.+ .+|+||++...++.++ ..... ++-...
T Consensus 223 ~D~tiriwd~~~~-~---~~~~~l--~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~ 295 (456)
T KOG0266|consen 223 DDKTLRIWDLKDD-G---RNLKTL--KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLA 295 (456)
T ss_pred CCceEEEeeccCC-C---eEEEEe--cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEE
Confidence 4788999999321 1 123333 257788899872 2455555444 6899999998665543 33444 444444
Q ss_pred EEEeCCEEEEEeccccEEEEEEecccCE---EEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCc
Q 000545 1202 LNIVKNFILLGDIHKSIYFLSWKEQGAQ---LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESW 1278 (1432)
Q Consensus 1202 l~~~~n~IlvgD~~~Sv~ll~~~~~~~~---l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~ 1278 (1432)
....+++|+.|+...=+.+ |+....+ +..+.++-.+..++++.|--+... ++++=.++.+.++.+.-.
T Consensus 296 f~~d~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~--ll~~~~d~~~~~w~l~~~----- 366 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRV--WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY--LLSASLDRTLKLWDLRSG----- 366 (456)
T ss_pred ECCCCCEEEEcCCCccEEE--EECCCCceeeeecccCCCCCCceeEEEECCCCcE--EEEecCCCeEEEEEccCC-----
Confidence 4456789999966333333 5766665 234444444448889998555555 566656666666654311
Q ss_pred cCceEEEEEEE--ecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEEeCC
Q 000545 1279 KGQKLLSRAEF--HVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLD 1341 (1432)
Q Consensus 1279 ~~~kL~~~~~f--~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~pl~ 1341 (1432)
.....| |..+ +.++.+..+.+ ...-++-|..+|.|...-+-+
T Consensus 367 -----~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 367 -----KSVGTYTGHSNL-VRCIFSPTLST---------------GGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred -----cceeeecccCCc-ceeEecccccC---------------CCCeEEEEeCCceEEEEeCCc
Confidence 111111 1222 24443322211 134677788888888776665
No 64
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=83.11 E-value=42 Score=40.94 Aligned_cols=146 Identities=13% Similarity=0.129 Sum_probs=90.8
Q ss_pred ceEEEEeccccceEEEe-ccceeeeecccccccccceEEEeeecCCcEEEEEecCcEEEEcCCcceEEEeCCCCCCCCCC
Q 000545 576 HAYLIISLEARTMVLET-ADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGS 654 (1432)
Q Consensus 576 ~~yLvlS~~~~T~Vl~~-g~~~eEv~~~~gF~~~~~Tl~ag~l~~~~~ivQVt~~~irli~~~~~~~~~~~~~~~~~~~~ 654 (1432)
+.+..++..+.-++... +..+.. ..-+.+..+-+.++-..++..+|=+|-++|.++........+++.
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~---~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~-------- 443 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTK---SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG-------- 443 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccc---cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccc--------
Confidence 34556666665556543 222321 112445555555666646678999999999999865544444441
Q ss_pred CCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCccccCCCCceEEEEeeccCCCCcccccccccccccCC
Q 000545 655 GSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1432)
Q Consensus 655 ~~~~~~I~~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1432)
-..+.++.+-...+++|...||.+.+|.+.....+-+.... ....+|++++...|
T Consensus 444 --y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~----~h~a~iT~vaySpd------------------- 498 (603)
T KOG0318|consen 444 --YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL----EHRAAITDVAYSPD------------------- 498 (603)
T ss_pred --cccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee----cccCCceEEEECCC-------------------
Confidence 22234555556779999999999999886542211111111 12667888877333
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCCce
Q 000545 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1432)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~ 773 (1432)
..|+|+|..++.+-+|++.+.+.
T Consensus 499 ----------------~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 499 ----------------GAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ----------------CcEEEEeccCCcEEEEEcccCce
Confidence 22999999999999999987554
No 65
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=83.00 E-value=1.2e+02 Score=36.76 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCccEEEEEEe--CCEEEEEEeCCcEEEEEecCC
Q 000545 657 ENSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPS 688 (1432)
Q Consensus 657 ~~~~I~~asi~--d~~vll~~~~g~i~~l~~~~~ 688 (1432)
....|.+.++. .|.++++=-||.+.+|++|.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk 245 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK 245 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCc
Confidence 34458888884 456666777999999998754
No 66
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=82.75 E-value=1.5e+02 Score=37.76 Aligned_cols=201 Identities=17% Similarity=0.174 Sum_probs=104.4
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEcc----ccCeEEEEeC--CeEEEEE
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALAS----LQGHLLIASG--PKIILHK 1180 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~-~~~~g~V~al~~----~~g~Ll~~vg--~~l~v~~ 1180 (1432)
.-.||+-|- .-|.|.||++.+ |+++.. +..+.-|.+|.- ...+|||+.+ .-|+||+
T Consensus 470 ~gqhLAsGD---------r~GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 470 DGQHLASGD---------RGGNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred CcceecccC---------ccCceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 346777775 579999999964 322222 223445555542 2347777665 4578899
Q ss_pred ccCCeeeeEEeecCCCeeEEEEEEeCC----EEEEEeccccEEEEEEecccCEEEEeeeccCC-ccEEEEEEEEcCCeeE
Q 000545 1181 WTGTELNGIAFYDAPPLYVVSLNIVKN----FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGS-LDCFATEFLIDGSTLS 1255 (1432)
Q Consensus 1181 ~~~~~L~~~a~~~~~~~~i~sl~~~~n----~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~-~~vta~~fl~d~~~l~ 1255 (1432)
.+.+-+ .+..++....-|++++...+ +.+-.-+-||+.|=.++... .-..+-|..+. +..|=-++-+|-+.-.
T Consensus 533 v~rny~-l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~-~g~~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 533 VKRNYD-LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS-SGRLFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred cccccc-hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc-CceeccccccccccceEEEeeeCCCcce
Confidence 887633 33344433678888887543 34444567888776665321 11122222221 1122222224433222
Q ss_pred EEEEecCCcEEEEeeCCC-CCC------CccC-------------------ceEEEEEEEecCcceeEEEEEe-eecCCC
Q 000545 1256 LVVSDEQKNIQIFYYAPK-MSE------SWKG-------------------QKLLSRAEFHVGAHVTKFLRLQ-MLATSS 1308 (1432)
Q Consensus 1256 ~l~~D~~gNl~vl~~~p~-~~~------s~~~-------------------~kL~~~~~f~lg~~vt~~~~~~-l~~~~~ 1308 (1432)
++.+=.+.||.+|..... ... +.+| .|-...-.|.-||.|..|.-.+ ++.
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT--- 687 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT--- 687 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhee---
Confidence 455555667777653211 000 1111 1334556778888887765321 111
Q ss_pred CCCCCCCCCC--CCCceEEEEEecCCcEEEEE
Q 000545 1309 DRTGAAPGSD--KTNRFALLFGTLDGSIGCIA 1338 (1432)
Q Consensus 1309 ~~~~~~~g~~--~~~~~~il~~t~~GsIg~l~ 1338 (1432)
|-. .+. ..+|-.+-+|-|.+-.
T Consensus 688 -------G~kF~nDC-kHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 688 -------GVKFLNDC-KHLISVSGDGCIFVWK 711 (1080)
T ss_pred -------eeeecccc-hhheeecCCceEEEEE
Confidence 111 122 3578888899987653
No 67
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.59 E-value=30 Score=38.36 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=93.1
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEc-cccCeEEEEeC--CeEEEEEccC
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALA-SLQGHLLIASG--PKIILHKWTG 1183 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~-~~g~V~al~-~~~g~Ll~~vg--~~l~v~~~~~ 1183 (1432)
.+.+|+++. .-.|.+|++......| +...+ ...-|+++. +..|+-...-| ..++||++..
T Consensus 51 dk~~LAaa~----------~qhvRlyD~~S~np~P------v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 51 DKKDLAAAG----------NQHVRLYDLNSNNPNP------VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred Ccchhhhcc----------CCeeEEEEccCCCCCc------eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 356677664 5578899998753323 22222 346688876 34687776665 6899999976
Q ss_pred CeeeeEEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEec
Q 000545 1184 TELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDE 1261 (1432)
Q Consensus 1184 ~~L~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~ 1261 (1432)
-...+ .++. +..|.++.. ...-+++||----|.+.-..+..-.-.++-.|- ..+.++....|++. ++++..
T Consensus 115 ~~~qR--~~~~-~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--~~i~sl~v~~dgsm--l~a~nn 187 (311)
T KOG0315|consen 115 LSCQR--NYQH-NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--TSIQSLTVMPDGSM--LAAANN 187 (311)
T ss_pred cccch--hccC-CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--cceeeEEEcCCCcE--EEEecC
Confidence 32222 2333 444554444 445788999888887754433211112223333 34666665567776 788999
Q ss_pred CCcEEEEeeCCCCCCCccCceEEEEEEEe
Q 000545 1262 QKNIQIFYYAPKMSESWKGQKLLSRAEFH 1290 (1432)
Q Consensus 1262 ~gNl~vl~~~p~~~~s~~~~kL~~~~~f~ 1290 (1432)
.||.++.+..... ....|+++..|.
T Consensus 188 kG~cyvW~l~~~~----~~s~l~P~~k~~ 212 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQ----TASELEPVHKFQ 212 (311)
T ss_pred CccEEEEEccCCC----ccccceEhhhee
Confidence 9999999865422 123455555443
No 68
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=82.44 E-value=93 Score=36.59 Aligned_cols=144 Identities=20% Similarity=0.181 Sum_probs=84.7
Q ss_pred EEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeee-EEee-cC-CCeeEEEEEEeCCEEEEEeccccEEEEEEec
Q 000545 1149 VYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNG-IAFY-DA-PPLYVVSLNIVKNFILLGDIHKSIYFLSWKE 1225 (1432)
Q Consensus 1149 v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~-~a~~-~~-~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~ 1225 (1432)
+.+.-..-+|.++.-=+.||+++.-.+||||++..=+|+- .-.. .. ......+....+.++..=+...+=.++-|+.
T Consensus 81 ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 81 ICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 4444567788888766789999999999999998655432 2222 11 0233444444455777777776666666765
Q ss_pred ccCEE-EEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeee
Q 000545 1226 QGAQL-NLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQML 1304 (1432)
Q Consensus 1226 ~~~~l-~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~~~l~ 1304 (1432)
..-+= ..+. .+.-.+-|++|--|+..| --++|+---|+||.. | +|+|+ -+|.=|-...++...++.
T Consensus 161 ~nl~~v~~I~--aH~~~lAalafs~~G~ll-ATASeKGTVIRVf~v-~------~G~kl---~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 161 INLQPVNTIN--AHKGPLAALAFSPDGTLL-ATASEKGTVIRVFSV-P------EGQKL---YEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred ccceeeeEEE--ecCCceeEEEECCCCCEE-EEeccCceEEEEEEc-C------CccEe---eeeeCCceeeEEEEEEEC
Confidence 43221 1111 344556777764555543 234455556677764 2 24444 456666666666665554
Q ss_pred c
Q 000545 1305 A 1305 (1432)
Q Consensus 1305 ~ 1305 (1432)
+
T Consensus 228 ~ 228 (391)
T KOG2110|consen 228 P 228 (391)
T ss_pred C
Confidence 4
No 69
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.38 E-value=9.1 Score=45.61 Aligned_cols=137 Identities=16% Similarity=0.248 Sum_probs=96.6
Q ss_pred cceEEEEEeeeecCCCcccceeEE-EEEEeecCCCCCccEEEEEE-EeecCceEEEccccC---eEEEEeCCeEEEEEcc
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVL-LFSTGRNADNPQNLVTEVYS-KELKGAISALASLQG---HLLIASGPKIILHKWT 1182 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~-vf~i~~~~~~~~~~l~~v~~-~~~~g~V~al~~~~g---~Ll~~vg~~l~v~~~~ 1182 (1432)
...||+-|- +|+.+ +|+... ++.++. +..+|+|.+++=..| .+.++.-.++.+|.++
T Consensus 213 Dgkylatgg----------~d~~v~Iw~~~t--------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 213 DGKYLATGG----------RDRHVQIWDCDT--------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID 274 (479)
T ss_pred CCcEEEecC----------CCceEEEecCcc--------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehh
Confidence 347888774 55554 777753 444444 557899999995554 4567777899999998
Q ss_pred CCeeeeEEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEe
Q 000545 1183 GTELNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD 1260 (1432)
Q Consensus 1183 ~~~L~~~a~~~~~~~~i~sl~~~--~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D 1260 (1432)
....+.. ++.. |.-|.+|... +--+-||-.-+++-+++. +++-+|+..+- .-.+-|++| ++++. |+.+-
T Consensus 275 ~~s~vet-lyGH-qd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~---~~sidcv~~-In~~H--fvsGS 345 (479)
T KOG0299|consen 275 QLSYVET-LYGH-QDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGG---EGSIDCVAF-INDEH--FVSGS 345 (479)
T ss_pred HhHHHHH-HhCC-ccceeeechhcccceEEeccccceeEEEec-cccceeeeeCC---CCCeeeEEE-ecccc--eeecc
Confidence 7654433 3444 6777777764 345558878889999887 66778877664 345778886 78888 88888
Q ss_pred cCCcEEEEeeC
Q 000545 1261 EQKNIQIFYYA 1271 (1432)
Q Consensus 1261 ~~gNl~vl~~~ 1271 (1432)
.+|+|.+....
T Consensus 346 dnG~IaLWs~~ 356 (479)
T KOG0299|consen 346 DNGSIALWSLL 356 (479)
T ss_pred CCceEEEeeec
Confidence 89999987643
No 70
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=81.44 E-value=26 Score=40.36 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=87.0
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCe--EE-EEe-CCeEEEEEccC
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGH--LL-IAS-GPKIILHKWTG 1183 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~--Ll-~~v-g~~l~v~~~~~ 1183 (1432)
..+|+|+|- .+|-|+|+++....- -+.+ .-.-++|..|.....+ || .|. .+.|++|.+..
T Consensus 104 ~~p~la~~G---------~~GvIrVid~~~~~~-----~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 104 GNPFLAAGG---------YLGVIRVIDVVSGQC-----SKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCeeEEeec---------ceeEEEEEecchhhh-----ccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 579999986 489999999876311 0111 1234555555544332 44 333 37899999988
Q ss_pred CeeeeE-EeecCCCeeEEEEE--EeCCEEEEEeccccEEEEEEe--cccCEEEEe-----------------------ee
Q 000545 1184 TELNGI-AFYDAPPLYVVSLN--IVKNFILLGDIHKSIYFLSWK--EQGAQLNLL-----------------------AK 1235 (1432)
Q Consensus 1184 ~~L~~~-a~~~~~~~~i~sl~--~~~n~IlvgD~~~Sv~ll~~~--~~~~~l~~~-----------------------ar 1235 (1432)
...+.+ +=+....--|.|+. ..+++|+-+-+-.|+.+.+.+ +-.++|+.. .+
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 764432 11222233455554 467899999999999998776 222332222 66
Q ss_pred ccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1236 DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1236 D~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
|.+...|-|+.|+.| ++.+=.-+|-.++-.+
T Consensus 248 diHrnyVDCvrw~gd-----~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGD-----FILSKSCENAIVCWKP 278 (385)
T ss_pred ccccchHHHHHHHhh-----heeecccCceEEEEec
Confidence 777777778877543 5666776675555443
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.43 E-value=32 Score=38.25 Aligned_cols=68 Identities=25% Similarity=0.315 Sum_probs=55.7
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc---cCeEEEEeC-CeEEEEEccC
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL---QGHLLIASG-PKIILHKWTG 1183 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~---~g~Ll~~vg-~~l~v~~~~~ 1183 (1432)
..+|+|.|+.++| ....|||+++++... ..+.++.+.+....++.++-- ..-+++|+| ..|++|++..
T Consensus 21 ~nrLavAt~q~yG--l~G~G~L~ile~~~~-----~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 21 ENRLAVATAQHYG--LAGNGRLFILEVTDP-----KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred cchhheeehhhcc--cccCceEEEEecCCC-----CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 5788999998887 777999999999732 248889999999999999843 346888888 6999999864
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=81.11 E-value=59 Score=36.64 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=74.7
Q ss_pred eecCceEEEcc-ccCeEEEEeCCeEEEEEccCCeeeeEEeec----CCCeeEEEEEEeC-CEEEEEecccc-------EE
Q 000545 1153 ELKGAISALAS-LQGHLLIASGPKIILHKWTGTELNGIAFYD----APPLYVVSLNIVK-NFILLGDIHKS-------IY 1219 (1432)
Q Consensus 1153 ~~~g~V~al~~-~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~----~~~~~i~sl~~~~-n~IlvgD~~~S-------v~ 1219 (1432)
+..+++..... -+|+|++|....+.++++...++...+... . ......+.+.. ..++++|.... =.
T Consensus 38 ~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~-~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 38 DLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVP-FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp ESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSC-TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred ecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcc-cCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 34556666665 478999999999999998887766655542 3 56777777754 46999998764 35
Q ss_pred EEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEec-CCcEEEEeeC
Q 000545 1220 FLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDE-QKNIQIFYYA 1271 (1432)
Q Consensus 1220 ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~-~gNl~vl~~~ 1271 (1432)
+++++.+ .+...+..+...- -.+.|-.|++. +.++|. .+.|+.|.++
T Consensus 117 v~~~~~~-~~~~~~~~~~~~p--NGi~~s~dg~~--lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADGLGFP--NGIAFSPDGKT--LYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEETT-SEEEEEEEEESSE--EEEEEETTSSE--EEEEETTTTEEEEEEEE
T ss_pred eEEECCC-CeEEEEecCcccc--cceEECCcchh--eeecccccceeEEEecc
Confidence 7777877 7777777764432 34444457777 455676 4456666554
No 73
>PTZ00420 coronin; Provisional
Probab=80.93 E-value=98 Score=39.65 Aligned_cols=152 Identities=9% Similarity=0.153 Sum_probs=76.3
Q ss_pred ecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEEEeecccccccccccccccccccccccCCCCCcc
Q 000545 974 SQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSV 1053 (1432)
Q Consensus 974 ~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 1053 (1432)
.++.++|-.+.... .+.. +.....+..+.++++.+.++..+.
T Consensus 146 ~DgtIrIWDl~tg~------~~~~-i~~~~~V~SlswspdG~lLat~s~------------------------------- 187 (568)
T PTZ00420 146 FDSFVNIWDIENEK------RAFQ-INMPKKLSSLKWNIKGNLLSGTCV------------------------------- 187 (568)
T ss_pred CCCeEEEEECCCCc------EEEE-EecCCcEEEEEECCCCCEEEEEec-------------------------------
Confidence 35677776665432 2334 555566778888888776655431
Q ss_pred ccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEE
Q 000545 1054 DLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLF 1133 (1432)
Q Consensus 1054 ~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf 1133 (1432)
...|+++|+. +.+.+.++. .++.......+.+..- .. ...+|+.+ ++.. ...+.|.+|
T Consensus 188 ---------D~~IrIwD~R----sg~~i~tl~--gH~g~~~s~~v~~~~f-s~-d~~~IlTt-G~d~----~~~R~VkLW 245 (568)
T PTZ00420 188 ---------GKHMHIIDPR----KQEIASSFH--IHDGGKNTKNIWIDGL-GG-DDNYILST-GFSK----NNMREMKLW 245 (568)
T ss_pred ---------CCEEEEEECC----CCcEEEEEe--cccCCceeEEEEeeeE-cC-CCCEEEEE-EcCC----CCccEEEEE
Confidence 0256788875 335554443 2332211111111100 11 22344432 2211 123579999
Q ss_pred EEeecCCCCCccEEEEEEEeecCceEEEccc----cCe-EEEEeC-CeEEEEEccCCeeeeEEee
Q 000545 1134 STGRNADNPQNLVTEVYSKELKGAISALASL----QGH-LLIASG-PKIILHKWTGTELNGIAFY 1192 (1432)
Q Consensus 1134 ~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~----~g~-Ll~~vg-~~l~v~~~~~~~L~~~a~~ 1192 (1432)
++.... +.++....+.....|..+ .|. +++|-| +.|++|++....+.....+
T Consensus 246 Dlr~~~-------~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 246 DLKNTT-------SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred ECCCCC-------CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc
Confidence 986421 122333444444444333 354 556655 7899999976655444433
No 74
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=80.52 E-value=1.5e+02 Score=36.37 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=59.3
Q ss_pred cEEEEcCCeEEEEEEEEeccCCccccCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEE
Q 000545 57 NLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILA 136 (1432)
Q Consensus 57 nLvvak~~~LeIy~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~L~~v~~~~l~G~I~~l~~~r~~~~~~~~~~D~Lll~ 136 (1432)
.|+|--.+.|.||.+... +|..++ ....+|+++.+|.+--..-+|..-.+.+.. ++|.|.|=
T Consensus 90 ~LaVLhP~kl~vY~v~~~-~g~~~~--------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~---~~~~IcVQ 151 (418)
T PF14727_consen 90 QLAVLHPRKLSVYSVSLV-DGTVEH--------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVK---GRDFICVQ 151 (418)
T ss_pred eEEEecCCEEEEEEEEec-CCCccc--------------CcEEEEEEEEEEecccceeEEEEEECCCCC---CceEEEEE
Confidence 799999999999998532 221111 123679999999999999999999988762 59999999
Q ss_pred eccceEEEEEEe
Q 000545 137 FEDAKISVLEFD 148 (1432)
Q Consensus 137 ~~~~klsil~~d 148 (1432)
+-||+|++.+-|
T Consensus 152 S~DG~L~~feqe 163 (418)
T PF14727_consen 152 SMDGSLSFFEQE 163 (418)
T ss_pred ecCceEEEEeCC
Confidence 999999998875
No 75
>PTZ00421 coronin; Provisional
Probab=80.49 E-value=1e+02 Score=38.81 Aligned_cols=146 Identities=6% Similarity=0.052 Sum_probs=75.9
Q ss_pred eEEEEEeeeecCCCcccceeEEEEEEeecCCCC--CccEEEEEEEeecCceEEEccc--cCeEEEEe--CCeEEEEEccC
Q 000545 1110 TLLAIGTAYVQGEDVAARGRVLLFSTGRNADNP--QNLVTEVYSKELKGAISALASL--QGHLLIAS--GPKIILHKWTG 1183 (1432)
Q Consensus 1110 ~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~--~~~l~~v~~~~~~g~V~al~~~--~g~Ll~~v--g~~l~v~~~~~ 1183 (1432)
.+|+.|. ..|.|.+|++....... ...+..+ ....+.|.+|+-- .+.+|++. ..+|+||++..
T Consensus 89 ~~LaSgS---------~DgtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 89 QKLFTAS---------EDGTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred CEEEEEe---------CCCEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 5777775 37899999996531100 0012211 2346778877632 23444433 47899999987
Q ss_pred CeeeeEEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEe-
Q 000545 1184 TELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD- 1260 (1432)
Q Consensus 1184 ~~L~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D- 1260 (1432)
.+.... +......|.++.. .+++++.|..-+.|.++ +....+...-........+..+.|..+.+.+...+.+
T Consensus 158 g~~~~~--l~~h~~~V~sla~spdG~lLatgs~Dg~IrIw--D~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 158 GKAVEV--IKCHSDQITSLEWNLDGSLLCTTSKDKKLNII--DPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred CeEEEE--EcCCCCceEEEEEECCCCEEEEecCCCEEEEE--ECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 654322 2211334555554 56788888777777775 5444433222222222223334444455553112222
Q ss_pred -cCCcEEEEee
Q 000545 1261 -EQKNIQIFYY 1270 (1432)
Q Consensus 1261 -~~gNl~vl~~ 1270 (1432)
.++.|.++..
T Consensus 234 s~Dr~VklWDl 244 (493)
T PTZ00421 234 SQQRQIMLWDT 244 (493)
T ss_pred CCCCeEEEEeC
Confidence 3567777764
No 76
>PHA02713 hypothetical protein; Provisional
Probab=80.38 E-value=31 Score=44.22 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=60.5
Q ss_pred eEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-Eecc---------------------ccEEEEEEecccCEEEE
Q 000545 1175 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIH---------------------KSIYFLSWKEQGAQLNL 1232 (1432)
Q Consensus 1175 ~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~~---------------------~Sv~ll~~~~~~~~l~~ 1232 (1432)
.+..|+...+++..++-+.. +-.-.++.+.+++|+| |-.. ..=.+..|+++.++-..
T Consensus 368 sve~Ydp~~~~W~~~~~mp~-~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPI-ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred eEEEEECCCCeEEECCCCCc-ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 57889988887777665544 3333345566776665 4221 12347789999999888
Q ss_pred eeeccCCccEEEEEEEEcCCeeEEEEEecCC-cE--EEEeeCCCC
Q 000545 1233 LAKDFGSLDCFATEFLIDGSTLSLVVSDEQK-NI--QIFYYAPKM 1274 (1432)
Q Consensus 1233 ~arD~~~~~vta~~fl~d~~~l~~l~~D~~g-Nl--~vl~~~p~~ 1274 (1432)
++.=..+|.-.++. .++ +.|+++|+-... .+ .+.+|+|+.
T Consensus 447 v~~m~~~r~~~~~~-~~~-~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 447 LPNFWTGTIRPGVV-SHK-DDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cCCCCcccccCcEE-EEC-CEEEEEeCCCCCCccceeEEEecCCC
Confidence 88766666554554 244 578777763321 12 356788875
No 77
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=79.56 E-value=32 Score=44.67 Aligned_cols=134 Identities=17% Similarity=0.276 Sum_probs=93.6
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEe-CCeEEEEEccCCeee-eEEeecCCCeeEEEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIAS-GPKIILHKWTGTELN-GIAFYDAPPLYVVSLN 1203 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~v-g~~l~v~~~~~~~L~-~~a~~~~~~~~i~sl~ 1203 (1432)
+.|-|.+|+.....+.|+. +.. ....|++++...++|++|. .+.|.+|.++..+-. -.+.+.. |..++...
T Consensus 33 sdg~ir~~~~~sd~e~P~t-i~~-----~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl-p~r~~~v~ 105 (933)
T KOG1274|consen 33 SDGDIRKWKTNSDEEEPET-IDI-----SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL-PIRDLAVS 105 (933)
T ss_pred CCCceEEeecCCcccCCch-hhc-----cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeec-cceEEEEe
Confidence 4788999887653344444 221 4568889988888887765 478889999864322 2333444 77777777
Q ss_pred EeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1204 IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1204 ~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
..|++|+.|---..|-++.-+.....+...+-| -.|+++.|-..++- +++++-+|++.+++..
T Consensus 106 g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~---apVl~l~~~p~~~f--LAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 106 GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD---APVLQLSYDPKGNF--LAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cCCcEEEeecCceeEEEEeccccchheeecccC---CceeeeeEcCCCCE--EEEEecCceEEEEEcc
Confidence 778899999878888888776666666555433 46888987444443 7888999999999865
No 78
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=79.55 E-value=51 Score=37.77 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=78.1
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc--CeEEEEeCCeEEEEEccCCe
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ--GHLLIASGPKIILHKWTGTE 1185 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~--g~Ll~~vg~~l~v~~~~~~~ 1185 (1432)
....|+|||. .| ||+|++... . ...+.+.. .+|+.|..+. +.|++=.|+.|++|++..=.
T Consensus 6 ~~~~L~vGt~---------~G-l~~~~~~~~-~---~~~~i~~~----~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 6 WGDRLLVGTE---------DG-LYVYDLSDP-S---KPTRILKL----SSITQLSVLPELNLLLVLSDGQLYVYDLDSLE 67 (275)
T ss_pred CCCEEEEEEC---------CC-EEEEEecCC-c---cceeEeec----ceEEEEEEecccCEEEEEcCCccEEEEchhhc
Confidence 3578999983 56 999999221 1 11222222 1288888776 67888889999999996311
Q ss_pred ee----------------eEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEE-EEeeeccCCccEEEEEEE
Q 000545 1186 LN----------------GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQL-NLLAKDFGSLDCFATEFL 1248 (1432)
Q Consensus 1186 L~----------------~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l-~~~arD~~~~~vta~~fl 1248 (1432)
.. .....+....+...-...+.+.++.=+.+.+.+++|+....++ ..+..=..|..+.++.|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~ 147 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL 147 (275)
T ss_pred cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence 00 1111222122221112234566666667799999998754444 333332345667777763
Q ss_pred EcCCeeEEEEEecCCcEEEEeeC
Q 000545 1249 IDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1249 ~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
++. ++++-+. ...++..+
T Consensus 148 --~~~--i~v~~~~-~f~~idl~ 165 (275)
T PF00780_consen 148 --GNK--ICVGTSK-GFYLIDLN 165 (275)
T ss_pred --CCE--EEEEeCC-ceEEEecC
Confidence 456 3444332 24444443
No 79
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=79.44 E-value=1e+02 Score=34.95 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=74.0
Q ss_pred EEEeecCceEEEccccCeEEEEe--CCeEEEEEccCCeeeeEEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEec
Q 000545 1150 YSKELKGAISALASLQGHLLIAS--GPKIILHKWTGTELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKE 1225 (1432)
Q Consensus 1150 ~~~~~~g~V~al~~~~g~Ll~~v--g~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~ 1225 (1432)
|++.+.+.+.+ .+|....+. -.++++|++...+- ..-|... ..-|.++.. ....|+-|-.-+.+-+. +-
T Consensus 62 HsH~v~dv~~s---~dg~~alS~swD~~lrlWDl~~g~~-t~~f~GH-~~dVlsva~s~dn~qivSGSrDkTiklw--nt 134 (315)
T KOG0279|consen 62 HSHFVSDVVLS---SDGNFALSASWDGTLRLWDLATGES-TRRFVGH-TKDVLSVAFSTDNRQIVSGSRDKTIKLW--NT 134 (315)
T ss_pred cceEecceEEc---cCCceEEeccccceEEEEEecCCcE-EEEEEec-CCceEEEEecCCCceeecCCCcceeeee--ee
Confidence 55556554433 556444443 47899999986421 1122222 334555444 34477777777777664 55
Q ss_pred ccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEee
Q 000545 1226 QGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1226 ~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
-......+++|-..-||+|+.|...++...|+.+-.++-+-+...
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 577778888888788999999987764544777777888888754
No 80
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=79.22 E-value=30 Score=44.40 Aligned_cols=170 Identities=19% Similarity=0.190 Sum_probs=101.3
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCC
Q 000545 1064 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1143 (1432)
Q Consensus 1064 ~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~ 1143 (1432)
.++..+||.. .+|..+.. |...=. ...++.+ ....+|||-.. |+. .-..+-.|+...
T Consensus 349 ~~ve~YD~~~--~~W~~~a~--M~~~R~--~~~v~~l-------~g~iYavGG~d--g~~--~l~svE~YDp~~------ 405 (571)
T KOG4441|consen 349 SSVERYDPRT--NQWTPVAP--MNTKRS--DFGVAVL-------DGKLYAVGGFD--GEK--SLNSVECYDPVT------ 405 (571)
T ss_pred ceEEEecCCC--CceeccCC--ccCccc--cceeEEE-------CCEEEEEeccc--ccc--ccccEEEecCCC------
Confidence 4677889875 47887542 222222 2222333 24677787543 110 011122222221
Q ss_pred ccEEEEEEEeecCceEEEccccCeEEEEeC--------CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEE-EEec
Q 000545 1144 NLVTEVYSKELKGAISALASLQGHLLIASG--------PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFIL-LGDI 1214 (1432)
Q Consensus 1144 ~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg--------~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Il-vgD~ 1214 (1432)
.+...+......-.=.+++.++|+|.+.-| .++..|+-..+++..++.+.. +-.-..+.+.+++|+ ||..
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEEEECCEEEEECCc
Confidence 246666655555555566778888888777 567788888888877776654 333334666777665 5542
Q ss_pred -----cccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEec
Q 000545 1215 -----HKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDE 1261 (1432)
Q Consensus 1215 -----~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~ 1261 (1432)
.++ +-+|+++.++-..++.-..+|.-..+. +.++.+++++++.
T Consensus 485 ~~~~~~~~--VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 485 DGTSALSS--VERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGFD 532 (571)
T ss_pred cCCCccce--EEEEcCCCCceeEcccCccccccccEE--EECCEEEEEeccc
Confidence 233 566899999999998777777777666 3446776776633
No 81
>PHA03098 kelch-like protein; Provisional
Probab=79.14 E-value=32 Score=43.89 Aligned_cols=98 Identities=9% Similarity=-0.003 Sum_probs=59.8
Q ss_pred EccccCeEEEEeC--------CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-Eecc-c-----cEEEEEEec
Q 000545 1161 LASLQGHLLIASG--------PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIH-K-----SIYFLSWKE 1225 (1432)
Q Consensus 1161 l~~~~g~Ll~~vg--------~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~~-~-----Sv~ll~~~~ 1225 (1432)
.+.++|+|.+.-| +.+..|+...+++...+-... +-+-.+..+.++.|+| |=.- . --.+..|++
T Consensus 385 ~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCceEEEECCEEEEECCccCCCCCcccceEEEecC
Confidence 3446777766555 457788887777766554433 3334455566776654 4110 0 112778898
Q ss_pred ccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEec
Q 000545 1226 QGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDE 1261 (1432)
Q Consensus 1226 ~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~ 1261 (1432)
+.++-..++.-..+++-.++. .+ ++.|+++++..
T Consensus 464 ~~~~W~~~~~~~~~r~~~~~~-~~-~~~iyv~GG~~ 497 (534)
T PHA03098 464 VTNKWTELSSLNFPRINASLC-IF-NNKIYVVGGDK 497 (534)
T ss_pred CCCceeeCCCCCcccccceEE-EE-CCEEEEEcCCc
Confidence 888888887666677655554 24 46787777755
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=79.14 E-value=1.5e+02 Score=35.46 Aligned_cols=150 Identities=9% Similarity=0.135 Sum_probs=88.9
Q ss_pred ceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee---
Q 000545 1078 WQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL--- 1154 (1432)
Q Consensus 1078 ~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~--- 1154 (1432)
++....+.++.+.-+--+. |. .+.+..++++- ..+.|.+|++....+ +++.+.....
T Consensus 180 l~~~~~~~~~~G~GPRh~~---f~----pdg~~~Yv~~e---------~s~~v~v~~~~~~~g----~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLA---FS----PDGKYAYVVNE---------LSNTVSVFDYDPSDG----SLTEIQTISTLPE 239 (345)
T ss_dssp EEEEEEEECSTTSSEEEEE---E-----TTSSEEEEEET---------TTTEEEEEEEETTTT----EEEEEEEEESCET
T ss_pred EEEeeccccccCCCCcEEE---Ec----CCcCEEEEecC---------CCCcEEEEeecccCC----ceeEEEEeeeccc
Confidence 3344556667766665553 32 12334445432 478899998874321 3554444332
Q ss_pred --cC--ceEEEcc-ccCe-EEEEe--CCeEEEEEccC--CeeeeEEeecCCCeeEEEEEE--eCCEEEEEecc-ccEEEE
Q 000545 1155 --KG--AISALAS-LQGH-LLIAS--GPKIILHKWTG--TELNGIAFYDAPPLYVVSLNI--VKNFILLGDIH-KSIYFL 1221 (1432)
Q Consensus 1155 --~g--~V~al~~-~~g~-Ll~~v--g~~l~v~~~~~--~~L~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~-~Sv~ll 1221 (1432)
.+ ...+|.- =+|+ |.++- .+.|.+|+++. .+|..+....+-..+...+.. .+++++|+... ..|.++
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 12 2444432 2454 55544 26899999953 457666655431223444444 78899999855 489999
Q ss_pred EEecccCEEEEeeeccCCccEEEEEE
Q 000545 1222 SWKEQGAQLNLLAKDFGSLDCFATEF 1247 (1432)
Q Consensus 1222 ~~~~~~~~l~~~arD~~~~~vta~~f 1247 (1432)
+.+.+.++|..+++...--..+|+.|
T Consensus 320 ~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 320 DIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEeCCCCcEEEecccccCCCCEEEeC
Confidence 99988999999987655555666654
No 83
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=78.74 E-value=15 Score=46.46 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=81.7
Q ss_pred ceEEEEEeeeecCCCcccceeEEE-EEEeecCCCCCccEEEE-EEEeecCceEEEc--cccCeEEEEeC-CeEEEEEcc-
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLL-FSTGRNADNPQNLVTEV-YSKELKGAISALA--SLQGHLLIASG-PKIILHKWT- 1182 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~v-f~i~~~~~~~~~~l~~v-~~~~~~g~V~al~--~~~g~Ll~~vg-~~l~v~~~~- 1182 (1432)
...++||| --|.|+. .+-.-.++. ....+.+ +-.-..|+|+++. +|--+++.++| -.++||..+
T Consensus 360 p~~FiVGT---------e~G~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~ 429 (555)
T KOG1587|consen 360 PNHFIVGT---------EEGKVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV 429 (555)
T ss_pred CceEEEEc---------CCcEEEEEeccCCcccc-cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC
Confidence 45689999 3677665 332222111 0111222 1123479999997 45555555555 588888877
Q ss_pred CCeeeeEEeecCCCeeEEEEEE---eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEE
Q 000545 1183 GTELNGIAFYDAPPLYVVSLNI---VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVS 1259 (1432)
Q Consensus 1183 ~~~L~~~a~~~~~~~~i~sl~~---~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~ 1259 (1432)
... +.-+++.-+.+++.+.= .--.++++|.+.=+.+.-+ ..+...++++....-.+....+--....+ +.++
T Consensus 430 ~~~--Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL--l~~~~~Pv~s~~~~~~~l~~~~~s~~g~~-lavG 504 (555)
T KOG1587|consen 430 IAS--PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL--LQDDEEPVLSQKVCSPALTRVRWSPNGKL-LAVG 504 (555)
T ss_pred CCC--cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhh--hccccCCcccccccccccceeecCCCCcE-EEEe
Confidence 321 11111111334444432 2345677887777776533 34455555555443444444442332444 7899
Q ss_pred ecCCcEEEEeeCC
Q 000545 1260 DEQKNIQIFYYAP 1272 (1432)
Q Consensus 1260 D~~gNl~vl~~~p 1272 (1432)
|..|++++++.++
T Consensus 505 d~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 505 DANGTTHILKLSE 517 (555)
T ss_pred cCCCcEEEEEcCc
Confidence 9999999999754
No 84
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.62 E-value=1.1e+02 Score=38.36 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=83.3
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEE--eCCeEEEEEccCCeeeeEEeecCCCeeEEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIA--SGPKIILHKWTGTELNGIAFYDAPPLYVVSL 1202 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~-~g~Ll~~--vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl 1202 (1432)
..+-++++....... ..++.+ ....-.|+.++-. .|+.+++ ...+|+||++.......+.+... ..+|+++
T Consensus 179 ~~~~i~~~~~~~~~~---~~~~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH-~~~v~~~ 252 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKS---NLLREL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH-STYVTSV 252 (456)
T ss_pred CCCcEEEeecccccc---hhhccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC-CCceEEE
Confidence 356677777632210 011111 3345566666643 4544433 34789999994432233334444 5666665
Q ss_pred EE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1203 NI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1203 ~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.. .+++|+.|..-+.|.+... ...+....-..... .|+++.|-.|++. ++.++.+|+|.++...
T Consensus 253 ~f~p~g~~i~Sgs~D~tvriWd~--~~~~~~~~l~~hs~-~is~~~f~~d~~~--l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 253 AFSPDGNLLVSGSDDGTVRIWDV--RTGECVRKLKGHSD-GISGLAFSPDGNL--LVSASYDGTIRVWDLE 318 (456)
T ss_pred EecCCCCEEEEecCCCcEEEEec--cCCeEEEeeeccCC-ceEEEEECCCCCE--EEEcCCCccEEEEECC
Confidence 54 6789999999999998644 34555444444433 7999998667666 7888999999999754
No 85
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.04 E-value=26 Score=39.93 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=49.0
Q ss_pred CCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEE-eecCceEEEcc--ccC--e--EEEEeCCeEEE
Q 000545 1106 KENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALAS--LQG--H--LLIASGPKIIL 1178 (1432)
Q Consensus 1106 ~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~-~~~g~V~al~~--~~g--~--Ll~~vg~~l~v 1178 (1432)
.-..++|+||. .|+.+-.++.++|+.+++. +|...+.+- +...||++|+- --| | |.+|.+.-|+|
T Consensus 181 r~~~p~iAvgs----~e~a~~~~~~~Iye~~e~~----rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I 252 (361)
T KOG2445|consen 181 RMHEPLIAVGS----DEDAPHLNKVKIYEYNENG----RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRI 252 (361)
T ss_pred cccCceEEEEc----ccCCccccceEEEEecCCc----ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEE
Confidence 34679999998 5678889999999998752 244434332 46789999982 223 2 44455555999
Q ss_pred EEccCC
Q 000545 1179 HKWTGT 1184 (1432)
Q Consensus 1179 ~~~~~~ 1184 (1432)
|.++..
T Consensus 253 ~~v~~~ 258 (361)
T KOG2445|consen 253 FKVKVA 258 (361)
T ss_pred EEEeec
Confidence 998753
No 86
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=76.91 E-value=58 Score=36.06 Aligned_cols=145 Identities=12% Similarity=0.180 Sum_probs=92.2
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEee---cCCCCCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccC-
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGR---NADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTG- 1183 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~---~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~- 1183 (1432)
.+.|+++|.. -|-|-+|.+.+ ....++.|++++.+...+||+|.|.-.+.+|+.|--..|+=|+|.+
T Consensus 21 ~~~~l~agn~---------~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 21 SKQYLFAGNL---------FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEE 91 (325)
T ss_pred cceEEEEecC---------CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhh
Confidence 4678999873 68899999875 2223345688888888999999999888888877778899899964
Q ss_pred ------Ceeee------EEeecCCCeeEEEEEE--eCC-EEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEE
Q 000545 1184 ------TELNG------IAFYDAPPLYVVSLNI--VKN-FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFL 1248 (1432)
Q Consensus 1184 ------~~L~~------~a~~~~~~~~i~sl~~--~~n-~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl 1248 (1432)
|+|.+ +....+ | -|.++.. ..| .++.| =++ .++.++-|.+++...-|-+.. .+-++. .
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~ev-P-eINam~ldP~enSi~~Ag--GD~-~~y~~dlE~G~i~r~~rGHtD-YvH~vv-~ 164 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEV-P-EINAMWLDPSENSILFAG--GDG-VIYQVDLEDGRIQREYRGHTD-YVHSVV-G 164 (325)
T ss_pred hhhccchhhhhhcCccccCcccC-C-ccceeEeccCCCcEEEec--CCe-EEEEEEecCCEEEEEEcCCcc-eeeeee-e
Confidence 12211 111112 1 1333333 344 44444 233 366778889998877764332 233332 1
Q ss_pred E-cCCeeEEEEEecCCcEEEEee
Q 000545 1249 I-DGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1249 ~-d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
- .... ++.+-.+|.+++...
T Consensus 165 R~~~~q--ilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 165 RNANGQ--ILSGAEDGTVRVWDT 185 (325)
T ss_pred cccCcc--eeecCCCccEEEEec
Confidence 1 2234 788888999998764
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.23 E-value=1.9e+02 Score=35.23 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=84.3
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC--eEEEEeCCeEEEEEcc-CCeeeeEEeecCCCeeEEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG--HLLIASGPKIILHKWT-GTELNGIAFYDAPPLYVVSL 1202 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g--~Ll~~vg~~l~v~~~~-~~~L~~~a~~~~~~~~i~sl 1202 (1432)
.-|.|.+|+.... -..+.+....-||-.++.+.+ .++.|-|+.+.||++- +.+++-.-+. . +-.||+|
T Consensus 174 YDg~vrl~DtR~~-------~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~-H-~KtVTcL 244 (487)
T KOG0310|consen 174 YDGKVRLWDTRSL-------TSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN-H-NKTVTCL 244 (487)
T ss_pred CCceEEEEEeccC-------CceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc-c-cceEEEE
Confidence 4789999998642 134666777889999998854 5667778999999997 5555433221 2 4458887
Q ss_pred EEeC--CEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1203 NIVK--NFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1203 ~~~~--n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
.... .+++-|-+-+=|-++.+ .+.+++- .=--|-.|.++..-.|+.+ ++++=.+|-+.+-+
T Consensus 245 ~l~s~~~rLlS~sLD~~VKVfd~--t~~Kvv~--s~~~~~pvLsiavs~dd~t--~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRHVKVFDT--TNYKVVH--SWKYPGPVLSIAVSPDDQT--VVIGMSNGLVSIRR 307 (487)
T ss_pred EeecCCceEeecccccceEEEEc--cceEEEE--eeecccceeeEEecCCCce--EEEecccceeeeeh
Confidence 7655 68888888888877653 3444432 2223445777773334455 56666677766653
No 88
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.12 E-value=53 Score=37.64 Aligned_cols=103 Identities=22% Similarity=0.329 Sum_probs=61.3
Q ss_pred EEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEee--------
Q 000545 1066 VRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR-------- 1137 (1432)
Q Consensus 1066 v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~-------- 1137 (1432)
+.++...+....|..+.+.. +-..-+..++ |... .+...+.|+|+| ..| |++|.|..
T Consensus 201 ~~Iye~~e~~rKw~kva~L~-d~~dpI~di~---wAPn-~Gr~y~~lAvA~---------kDg-v~I~~v~~~~s~i~~e 265 (361)
T KOG2445|consen 201 VKIYEYNENGRKWLKVAELP-DHTDPIRDIS---WAPN-IGRSYHLLAVAT---------KDG-VRIFKVKVARSAIEEE 265 (361)
T ss_pred eEEEEecCCcceeeeehhcC-CCCCcceeee---eccc-cCCceeeEEEee---------cCc-EEEEEEeeccchhhhh
Confidence 44554443344676665433 3333444443 3321 233567778877 467 99999973
Q ss_pred cCCCC----CccEEEEEEE-eecCceEEEc-cccCeEEEEeC--CeEEEEEccC
Q 000545 1138 NADNP----QNLVTEVYSK-ELKGAISALA-SLQGHLLIASG--PKIILHKWTG 1183 (1432)
Q Consensus 1138 ~~~~~----~~~l~~v~~~-~~~g~V~al~-~~~g~Ll~~vg--~~l~v~~~~~ 1183 (1432)
+...+ +..+++|.+. +.+|.|-.++ .+-|.+|++.| .+|++|+-.-
T Consensus 266 e~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 266 EVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred cccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 11111 2245666653 4688999887 46799999998 5788877653
No 89
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=75.75 E-value=67 Score=35.74 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=59.0
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCC
Q 000545 1064 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1143 (1432)
Q Consensus 1064 ~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~ 1143 (1432)
++|++.|++ +|..+-+|+++-| +.+.+|. .+++++|-|- --+.++.|++....
T Consensus 205 ssV~Fwdak----sf~~lKs~k~P~n-----V~SASL~-----P~k~~fVaGg---------ed~~~~kfDy~Tge---- 257 (334)
T KOG0278|consen 205 SSVKFWDAK----SFGLLKSYKMPCN-----VESASLH-----PKKEFFVAGG---------EDFKVYKFDYNTGE---- 257 (334)
T ss_pred ceeEEeccc----cccceeeccCccc-----ccccccc-----CCCceEEecC---------cceEEEEEeccCCc----
Confidence 467788874 5677777776643 3444554 3457777774 25778888886531
Q ss_pred ccEEEEEEEeecCceEEEccccCeEEEEeC---CeEEEEEccCC
Q 000545 1144 NLVTEVYSKELKGAISALASLQGHLLIASG---PKIILHKWTGT 1184 (1432)
Q Consensus 1144 ~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg---~~l~v~~~~~~ 1184 (1432)
.+.. |-+..-|||.|+.=--+-.+.|+| .+|++|+....
T Consensus 258 -Ei~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 258 -EIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred -eeee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 1222 345567999998844455566776 47999998743
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.40 E-value=2.7e+02 Score=36.52 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.2
Q ss_pred cEEEEEEeCCEEEEEEeCCcEEEE
Q 000545 660 TVLSVSIADPYVLLGMSDGSIRLL 683 (1432)
Q Consensus 660 ~I~~asi~d~~vll~~~~g~i~~l 683 (1432)
.|.+++.+..-|++...+|.|+.|
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~L 50 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVIL 50 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEe
Confidence 577888788889999999999876
No 91
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.00 E-value=30 Score=40.99 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=54.7
Q ss_pred eEEEEEE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1198 YVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1198 ~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
-|+++.| .|+|+.+|.+-.||.++ +...-+...+.+--+..-||.++|..|...+.=+.+|..-+++.+..+
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~--~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIY--DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEE--EeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 4566666 47899999998899887 445667777888888889999999888777655666777777766543
No 92
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=74.77 E-value=59 Score=39.38 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=79.0
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEccccCeEEE-EeCCeEEEEEccCC-eeee-EEe--ecCCCeeEE
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALASLQGHLLI-ASGPKIILHKWTGT-ELNG-IAF--YDAPPLYVV 1200 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~-~~g~V~al~~~~g~Ll~-~vg~~l~v~~~~~~-~L~~-~a~--~~~~~~~i~ 1200 (1432)
-+.+++|+..... .++++...+ ..=|..++.+..+.+++ ++++.|.+|....+ ++.+ +.| ... +.|.+
T Consensus 363 dks~riWe~~~~v-----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGys~ 436 (503)
T KOG0282|consen 363 DKSVRIWENRIPV-----PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGYSC 436 (503)
T ss_pred CccEEEEEcCCCc-----cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-cCcee
Confidence 3478888886531 244444333 24455556665554443 45788999887542 3333 223 223 66777
Q ss_pred EEEE--eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEE
Q 000545 1201 SLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIF 1268 (1432)
Q Consensus 1201 sl~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl 1268 (1432)
++.. .|.+++-||.--.+.++-|+.- +++-.-+-+ ..-|+.+.+...+..- ++.++-+|-|-++
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~--kl~~~lkah-~~~ci~v~wHP~e~Sk-vat~~w~G~Ikiw 502 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTT--KLVSKLKAH-DQPCIGVDWHPVEPSK-VATCGWDGLIKIW 502 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhh--hhhhccccC-CcceEEEEecCCCcce-eEecccCceeEec
Confidence 7665 4679999999999999988742 222222222 2447777776555443 6778888887664
No 93
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=74.72 E-value=51 Score=39.78 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=74.4
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc--CeEEEEeC--CeEEEEEccCCe----eeeEEeecCCCe
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ--GHLLIASG--PKIILHKWTGTE----LNGIAFYDAPPL 1197 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~--g~Ll~~vg--~~l~v~~~~~~~----L~~~a~~~~~~~ 1197 (1432)
+.|+|+||+|.... | .-++++ ..|+|.+|. ++ |.||++.. .++.||.+++.. |..- .-
T Consensus 337 td~~i~V~kv~~~~--P--~~t~~G---H~g~V~alk-~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H------sk 402 (524)
T KOG0273|consen 337 TDGCIHVCKVGEDR--P--VKTFIG---HHGEVNALK-WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH------SK 402 (524)
T ss_pred CCceEEEEEecCCC--c--ceeeec---ccCceEEEE-ECCCCceEEEecCCCeeEeeecCCCcchhhhhhh------cc
Confidence 48999999998642 1 123333 679999987 54 88886654 689999987531 2110 10
Q ss_pred eEEEEE----------EeCCEEEEEeccccEEEEEEecccCE-EEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEE
Q 000545 1198 YVVSLN----------IVKNFILLGDIHKSIYFLSWKEQGAQ-LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQ 1266 (1432)
Q Consensus 1198 ~i~sl~----------~~~n~IlvgD~~~Sv~ll~~~~~~~~-l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~ 1266 (1432)
-|.+|+ ...|.+++.-..+|...+ |+.+... +..+-| +.-.|+++.|..++.. ++.++.+|-++
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l-wdv~~gv~i~~f~k--H~~pVysvafS~~g~y--lAsGs~dg~V~ 477 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL-WDVESGVPIHTLMK--HQEPVYSVAFSPNGRY--LASGSLDGCVH 477 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEE-EEccCCceeEeecc--CCCceEEEEecCCCcE--EEecCCCCeeE
Confidence 111111 123455555555554332 4444332 222222 3346999999777776 78899999999
Q ss_pred EEe
Q 000545 1267 IFY 1269 (1432)
Q Consensus 1267 vl~ 1269 (1432)
+..
T Consensus 478 iws 480 (524)
T KOG0273|consen 478 IWS 480 (524)
T ss_pred ecc
Confidence 985
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.44 E-value=24 Score=40.39 Aligned_cols=81 Identities=15% Similarity=0.270 Sum_probs=57.8
Q ss_pred CccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCccccCCCCceEEEEeeccCCCCcccccccccccccCCccc
Q 000545 658 NSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1432)
Q Consensus 658 ~~~I~~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1432)
..+|++.+++.||++=.-+|.+|.+|.+... .++.. +-...+.|.|+.+|...
T Consensus 43 ~~sitavAVs~~~~aSGssDetI~IYDm~k~---~qlg~---ll~HagsitaL~F~~~~--------------------- 95 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDETIHIYDMRKR---KQLGI---LLSHAGSITALKFYPPL--------------------- 95 (362)
T ss_pred ccceeEEEecceeEeccCCCCcEEEEeccch---hhhcc---eeccccceEEEEecCCc---------------------
Confidence 3469999999999998888889998876421 11111 11236678888775442
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCCCceeEEe
Q 000545 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1432)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~v~~~ 777 (1432)
+.-+|.-|.+||.+.||+..+..++...
T Consensus 96 ------------S~shLlS~sdDG~i~iw~~~~W~~~~sl 123 (362)
T KOG0294|consen 96 ------------SKSHLLSGSDDGHIIIWRVGSWELLKSL 123 (362)
T ss_pred ------------chhheeeecCCCcEEEEEcCCeEEeeee
Confidence 1228888999999999999998776654
No 95
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=74.40 E-value=1.4e+02 Score=35.17 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=66.1
Q ss_pred EeecCceEEEccc-cCeEEEEeC--CeEEEEEccCCeee-eEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccc
Q 000545 1152 KELKGAISALASL-QGHLLIASG--PKIILHKWTGTELN-GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQG 1227 (1432)
Q Consensus 1152 ~~~~g~V~al~~~-~g~Ll~~vg--~~l~v~~~~~~~L~-~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~ 1227 (1432)
...+++|+|+.-- +..|+|.-| .+=++|+....++. ...-++- ....+.-+..+.+++-||+--=|.+++-+...
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD-SVt~~~FshdgtlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD-SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCC-ceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence 4567899988744 566666555 46789999876632 2333433 22222333457899999988777776554322
Q ss_pred CEEEEe--eeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCC
Q 000545 1228 AQLNLL--AKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1228 ~~l~~~--arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p 1272 (1432)
.+-... +.| -.|+.-. .-... +++++++|++|+++.+.
T Consensus 140 ~~~~~~~e~~d--ieWl~WH---p~a~i--llAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 140 EQWKLDQEVED--IEWLKWH---PRAHI--LLAGSTDGSVWMWQIPS 179 (399)
T ss_pred eEEEeecccCc--eEEEEec---ccccE--EEeecCCCcEEEEECCC
Confidence 222211 111 1122211 12223 78999999999999754
No 96
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.32 E-value=2.5e+02 Score=35.50 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=37.0
Q ss_pred EEccccCeEEE-EeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEec
Q 000545 1160 ALASLQGHLLI-ASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKE 1225 (1432)
Q Consensus 1160 al~~~~g~Ll~-~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~ 1225 (1432)
+..-|.|.|+. .....+++|+|+..+|++.-....=+.|.. -.|.++.++ .-.|..+++|+.
T Consensus 429 ~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~---d~g~lVai~-~d~Sfyil~~n~ 491 (794)
T KOG0276|consen 429 AEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVYWS---DNGELVAIA-GDDSFYILKFNA 491 (794)
T ss_pred eeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeEEe---cCCCEEEEE-ecCceeEEEecH
Confidence 34456787774 455789999999998877543221022221 123344433 336788999975
No 97
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=74.00 E-value=79 Score=31.06 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=49.4
Q ss_pred eEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC-eEEE
Q 000545 1092 ALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG-HLLI 1170 (1432)
Q Consensus 1092 v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g-~Ll~ 1170 (1432)
|.||+.+.|. ++.+.-|+|||. -..|.+|+= =+++++....+.|++|+.+.+ ++..
T Consensus 2 V~al~~~d~d----~dg~~eLlvGs~---------D~~IRvf~~----------~e~~~Ei~e~~~v~~L~~~~~~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFD----GDGENELLVGSD---------DFEIRVFKG----------DEIVAEITETDKVTSLCSLGGGRFAY 58 (111)
T ss_pred eeEEEEEecC----CCCcceEEEecC---------CcEEEEEeC----------CcEEEEEecccceEEEEEcCCCEEEE
Confidence 6788888774 456788999983 455666652 245777777899999998865 6665
Q ss_pred Ee-CCeEEEEEccCC
Q 000545 1171 AS-GPKIILHKWTGT 1184 (1432)
Q Consensus 1171 ~v-g~~l~v~~~~~~ 1184 (1432)
|. |.+|-+|+-..+
T Consensus 59 ~l~NGTVGvY~~~~R 73 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR 73 (111)
T ss_pred EecCCEEEEEeCcce
Confidence 54 578888876444
No 98
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.41 E-value=2.5e+02 Score=37.70 Aligned_cols=188 Identities=14% Similarity=0.178 Sum_probs=119.9
Q ss_pred CCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE----------EeecCc
Q 000545 1088 SSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS----------KELKGA 1157 (1432)
Q Consensus 1088 ~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~----------~~~~g~ 1157 (1432)
+.-.|+.++.++ .....++++|+ +.|-|.+|+=-...- .+.|+|.. ..--|.
T Consensus 1108 ~~t~Vs~l~liN------e~D~aLlLtas---------~dGvIRIwk~y~~~~---~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1108 PDTRVSDLELIN------EQDDALLLTAS---------SDGVIRIWKDYADKW---KKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred CCCccceeeeec------ccchhheeeec---------cCceEEEeccccccc---CCceeEEeeccccccCccCCCCCe
Confidence 345666676553 23567888887 588888886443220 12344332 111256
Q ss_pred eEEEccccCeEEEEeC-CeEEEEEccCCeeeeEEeecCCCeeEEEEEE---eCCEEEEEeccccEEEEEEec-ccCEEEE
Q 000545 1158 ISALASLQGHLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLNI---VKNFILLGDIHKSIYFLSWKE-QGAQLNL 1232 (1432)
Q Consensus 1158 V~al~~~~g~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~---~~n~IlvgD~~~Sv~ll~~~~-~~~~l~~ 1232 (1432)
|+.=.+-+|+|+++-+ ..|+||+...+++..---+.. .+.|++|+. .+|.|++|=.-.||-++--+- .+..++.
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 7777778899988775 467889998776554333445 677888775 479999999999998875432 3456777
Q ss_pred eeeccCCc-cEEEEEEEEcC-CeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEE
Q 000545 1233 LAKDFGSL-DCFATEFLIDG-STLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR 1300 (1432)
Q Consensus 1233 ~arD~~~~-~vta~~fl~d~-~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~ 1300 (1432)
.-|-++.. .|..+.+--.+ .. ++.+-.+|.|.+++..-... -.-+....++..|.-.|++..
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~e--lvSgs~~G~I~~~DlR~~~~----e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGE--LVSGSQDGDIQLLDLRMSSK----ETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred eecccCCcccceeEEeecCCCcc--eeeeccCCeEEEEecccCcc----cccceeeeccccCccceeeee
Confidence 77766543 26666642211 23 78888999999987532210 123556677777887888764
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.38 E-value=80 Score=38.07 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=88.0
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-CeEEEEeC---CeEEEEEccC-CeeeeEEeecCCCeeEEE
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-GHLLIASG---PKIILHKWTG-TELNGIAFYDAPPLYVVS 1201 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~-g~Ll~~vg---~~l~v~~~~~-~~L~~~a~~~~~~~~i~s 1201 (1432)
...+.+|.+..- .-++.+ +...+.|.+|..+. ++. +++| .++++|++.+ .+|+-.+- ...+-+
T Consensus 265 Drsvkvw~~~~~-----s~vetl--yGHqd~v~~IdaL~reR~-vtVGgrDrT~rlwKi~eesqlifrg~----~~sidc 332 (479)
T KOG0299|consen 265 DRSVKVWSIDQL-----SYVETL--YGHQDGVLGIDALSRERC-VTVGGRDRTVRLWKIPEESQLIFRGG----EGSIDC 332 (479)
T ss_pred CCceEEEehhHh-----HHHHHH--hCCccceeeechhcccce-EEeccccceeEEEeccccceeeeeCC----CCCeee
Confidence 456777777541 112333 23567888888875 455 4455 6899999964 34554321 111222
Q ss_pred EEEeC-CEEEEEeccccEEEEEEecc-cCEEEEeeecc--------CCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1202 LNIVK-NFILLGDIHKSIYFLSWKEQ-GAQLNLLAKDF--------GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1202 l~~~~-n~IlvgD~~~Sv~ll~~~~~-~~~l~~~arD~--------~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
+..+. +-.+.|-.--+|.|..+... +--...+|.-. ++.|++++.. +-++.| ++.+--+|++.+....
T Consensus 333 v~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~-i~~sdL-~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 333 VAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV-IPGSDL-LASGSWSGCVRLWKIE 410 (479)
T ss_pred EEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEe-cccCce-EEecCCCCceEEEEec
Confidence 22222 23345555555555544211 11111222222 2359999994 666665 6667779999999865
Q ss_pred CCCCCCccCceEEEEEEEecCcceeEEE
Q 000545 1272 PKMSESWKGQKLLSRAEFHVGAHVTKFL 1299 (1432)
Q Consensus 1272 p~~~~s~~~~kL~~~~~f~lg~~vt~~~ 1299 (1432)
+.- ..+....++.+...||++.
T Consensus 411 ~g~------r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 411 DGL------RAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred CCc------cccceeeecccccEEEEEE
Confidence 432 3577888888888898886
No 100
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.08 E-value=16 Score=36.98 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=39.5
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc
Q 000545 1089 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA 1162 (1432)
Q Consensus 1089 ~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~ 1162 (1432)
|..++|++.-.|+. ...+..|+||| .-.|++|++.++.+ ++-+++...|.+|.
T Consensus 47 n~~italaaG~l~~---~~~~D~LliGt----------~t~llaYDV~~N~d--------~Fyke~~DGvn~i~ 99 (136)
T PF14781_consen 47 NQEITALAAGRLKP---DDGRDCLLIGT----------QTSLLAYDVENNSD--------LFYKEVPDGVNAIV 99 (136)
T ss_pred CCceEEEEEEecCC---CCCcCEEEEec----------cceEEEEEcccCch--------hhhhhCccceeEEE
Confidence 67889999999863 34679999998 55789999987532 34456667777765
No 101
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=69.92 E-value=1.5e+02 Score=33.63 Aligned_cols=154 Identities=17% Similarity=0.187 Sum_probs=91.8
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEc-cccC
Q 000545 1089 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALA-SLQG 1166 (1432)
Q Consensus 1089 ~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~-~~g~V~al~-~~~g 1166 (1432)
.|.|.|++... ...+.++|.++. -+-+.+|++.. +++.+... ..|-|++++ +-.|
T Consensus 148 ~~WVscvrfsP-------~~~~p~Ivs~s~--------DktvKvWnl~~--------~~l~~~~~gh~~~v~t~~vSpDG 204 (315)
T KOG0279|consen 148 REWVSCVRFSP-------NESNPIIVSASW--------DKTVKVWNLRN--------CQLRTTFIGHSGYVNTVTVSPDG 204 (315)
T ss_pred cCcEEEEEEcC-------CCCCcEEEEccC--------CceEEEEccCC--------cchhhccccccccEEEEEECCCC
Confidence 57788876432 122555566543 45677887753 33322222 467777777 4578
Q ss_pred eEEEEeC--CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCE-EEEEeccccEEEEEEec----ccCEEEEeeec--c
Q 000545 1167 HLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNF-ILLGDIHKSIYFLSWKE----QGAQLNLLAKD--F 1237 (1432)
Q Consensus 1167 ~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~-IlvgD~~~Sv~ll~~~~----~~~~l~~~arD--~ 1237 (1432)
.|++.-| .++++|++.+++- .-.++. ...|.++....|+ .++.=.-.||-+..-.. ++.++..++-. .
T Consensus 205 slcasGgkdg~~~LwdL~~~k~--lysl~a-~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEGKN--LYSLEA-FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred CEEecCCCCceEEEEEccCCce--eEeccC-CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccccccc
Confidence 8887765 5799999987652 233455 5667778877774 34444455666643221 12233333321 1
Q ss_pred CCccEEEEEEEEcCCeeEEEEEecCCcEEEEee
Q 000545 1238 GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1238 ~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
..-.++++++--|+.+ +++++.++-|.+++.
T Consensus 282 ~~~~clslaws~dG~t--Lf~g~td~~irv~qv 312 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQT--LFAGYTDNVIRVWQV 312 (315)
T ss_pred CCcEEEEEEEcCCCcE--EEeeecCCcEEEEEe
Confidence 1235677777678888 678999999998864
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=67.87 E-value=57 Score=41.50 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=84.8
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEE-eecCceEEEcccc-CeEEEEe-CCeEEEEEccCCe
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALASLQ-GHLLIAS-GPKIILHKWTGTE 1185 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~-~~~g~V~al~~~~-g~Ll~~v-g~~l~v~~~~~~~ 1185 (1432)
..+++.|+ ..|.|.+|++.. .+.++.. -..+.|+++.-=. .+++-|. -..|++|++..++
T Consensus 341 ~~~lvsgs---------~d~~v~VW~~~~--------~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 341 EPLLVSGS---------YDGTVKVWDPRT--------GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred CCEEEEEe---------cCceEEEEEhhh--------ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh
Confidence 68999998 488999999973 3333332 2689999984323 4555443 4569999998774
Q ss_pred eeeEEeecCCCeeEEEEEEeCCEEEEEecccc-EEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCc
Q 000545 1186 LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKS-IYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKN 1264 (1432)
Q Consensus 1186 L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~S-v~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gN 1264 (1432)
..+..+......+.++...++++ ++..+++ |.+ |+.+.+.......-.+.-.++++.+ . +.. ++++=.+|.
T Consensus 404 -~c~~tl~~h~~~v~~l~~~~~~L-vs~~aD~~Ik~--WD~~~~~~~~~~~~~~~~~v~~l~~-~-~~~--il~s~~~~~ 475 (537)
T KOG0274|consen 404 -KCIHTLQGHTSLVSSLLLRDNFL-VSSSADGTIKL--WDAEEGECLRTLEGRHVGGVSALAL-G-KEE--ILCSSDDGS 475 (537)
T ss_pred -hhhhhhcCCccccccccccccee-EeccccccEEE--eecccCceeeeeccCCcccEEEeec-C-cce--EEEEecCCe
Confidence 11222333144455555556655 4545554 544 4555555444443334455666663 2 344 788888899
Q ss_pred EEEEeeCC
Q 000545 1265 IQIFYYAP 1272 (1432)
Q Consensus 1265 l~vl~~~p 1272 (1432)
+.++.+..
T Consensus 476 ~~l~dl~~ 483 (537)
T KOG0274|consen 476 VKLWDLRS 483 (537)
T ss_pred eEEEeccc
Confidence 98887654
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=67.65 E-value=2.2e+02 Score=32.26 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=25.9
Q ss_pred cCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEE
Q 000545 975 QGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLI 1020 (1432)
Q Consensus 975 ~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~ 1020 (1432)
++.+++..+... -.++. +..+..|+.++++++.+.+++.
T Consensus 10 d~~v~~~d~~t~------~~~~~-~~~~~~~~~l~~~~dg~~l~~~ 48 (300)
T TIGR03866 10 DNTISVIDTATL------EVTRT-FPVGQRPRGITLSKDGKLLYVC 48 (300)
T ss_pred CCEEEEEECCCC------ceEEE-EECCCCCCceEECCCCCEEEEE
Confidence 456666655432 25566 8877788889999887755443
No 104
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=67.62 E-value=1.7e+02 Score=31.91 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=73.6
Q ss_pred ceEEEeeCCC--cccEEEEeCCCCeEEEEEeecccccccccccccccccccccccCCCCCccccccccccceEEEEEecc
Q 000545 994 PVQKVIPLKA--TPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEP 1071 (1432)
Q Consensus 994 ~ir~~i~L~~--tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp 1071 (1432)
++.. +++.. ..+.++++|..+.++|+.... | ..+++++.
T Consensus 50 ~~~~-i~l~~~~~I~~~~WsP~g~~favi~g~~---~-----------------------------------~~v~lyd~ 90 (194)
T PF08662_consen 50 PVES-IELKKEGPIHDVAWSPNGNEFAVIYGSM---P-----------------------------------AKVTLYDV 90 (194)
T ss_pred ccce-eeccCCCceEEEEECcCCCEEEEEEccC---C-----------------------------------cccEEEcC
Confidence 5566 77753 489999999999999875310 0 03445554
Q ss_pred CCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE
Q 000545 1072 DRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS 1151 (1432)
Q Consensus 1072 ~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~ 1151 (1432)
. .+.+. .|.. ..+.+ +.+. ....|+++|..- ...|.|.+|++.+ .+.+.+
T Consensus 91 ~-----~~~i~--~~~~-~~~n~---i~ws-----P~G~~l~~~g~~------n~~G~l~~wd~~~--------~~~i~~ 140 (194)
T PF08662_consen 91 K-----GKKIF--SFGT-QPRNT---ISWS-----PDGRFLVLAGFG------NLNGDLEFWDVRK--------KKKIST 140 (194)
T ss_pred c-----ccEeE--eecC-CCceE---EEEC-----CCCCEEEEEEcc------CCCcEEEEEECCC--------CEEeec
Confidence 1 12232 2332 22222 3343 234688877632 2359999999863 555666
Q ss_pred EeecCceEEEc-cccCe-EEEEe-------CCeEEEEEccCCeeeeEEe
Q 000545 1152 KELKGAISALA-SLQGH-LLIAS-------GPKIILHKWTGTELNGIAF 1191 (1432)
Q Consensus 1152 ~~~~g~V~al~-~~~g~-Ll~~v-------g~~l~v~~~~~~~L~~~a~ 1191 (1432)
.+... ++.++ .-+|+ |+++. .+.+.||.+.++.|.+..+
T Consensus 141 ~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~ 188 (194)
T PF08662_consen 141 FEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF 188 (194)
T ss_pred cccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence 55554 34443 23565 44442 4667889998776655443
No 105
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=67.11 E-value=1.1e+02 Score=39.50 Aligned_cols=188 Identities=14% Similarity=0.168 Sum_probs=106.2
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecC----C
Q 000545 1065 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNA----D 1140 (1432)
Q Consensus 1065 ~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~----~ 1140 (1432)
.++.+||.+ ..|..+....-... -.+++++ +...+|||--.. + ...--.+..|+...+. .
T Consensus 302 ~ve~yd~~~--~~w~~~a~m~~~r~--~~~~~~~---------~~~lYv~GG~~~-~--~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 302 SVECYDPKT--NEWSSLAPMPSPRC--RVGVAVL---------NGKLYVVGGYDS-G--SDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eeEEecCCc--CcEeecCCCCcccc--cccEEEE---------CCEEEEEccccC-C--CcccceEEEecCCCCceeccC
Confidence 677889874 36877654332222 2233322 235666664221 0 1122334444443210 0
Q ss_pred CCCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-E--eccc-
Q 000545 1141 NPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-G--DIHK- 1216 (1432)
Q Consensus 1141 ~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-g--D~~~- 1216 (1432)
.-...--...-....|.+|++.+++|.= .-+++-.|+-..+++..++-+.. +-+-....+.+++|++ | |...
T Consensus 366 ~M~~~R~~~~v~~l~g~iYavGG~dg~~---~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 366 PMNTKRSDFGVAVLDGKLYAVGGFDGEK---SLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred CccCccccceeEEECCEEEEEecccccc---ccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCcc
Confidence 0011111233344667777766666421 11357788888888888887777 6777778888886654 2 2222
Q ss_pred -cEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCc-E-EEEeeCCCC
Q 000545 1217 -SIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKN-I-QIFYYAPKM 1274 (1432)
Q Consensus 1217 -Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gN-l-~vl~~~p~~ 1274 (1432)
-=++..|++..++=..++.=..+|....+.. ++ +.|+++++...-+ + .+-+|+|..
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~-~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LN-GKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEE-EC-CEEEEECCccCCCccceEEEEcCCC
Confidence 0345668999999999999888888888774 45 5776666544311 1 145677764
No 106
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.04 E-value=16 Score=42.87 Aligned_cols=104 Identities=15% Similarity=0.253 Sum_probs=70.7
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCC
Q 000545 1064 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1143 (1432)
Q Consensus 1064 ~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~ 1143 (1432)
+.+|++|+..+ . .++.+|.|. |.+++.. .+. ....+|.+|+ ++|.|-.|++..
T Consensus 226 hqvR~YDt~~q--R-RPV~~fd~~--E~~is~~--~l~-----p~gn~Iy~gn---------~~g~l~~FD~r~------ 278 (412)
T KOG3881|consen 226 HQVRLYDTRHQ--R-RPVAQFDFL--ENPISST--GLT-----PSGNFIYTGN---------TKGQLAKFDLRG------ 278 (412)
T ss_pred eeEEEecCccc--C-cceeEeccc--cCcceee--eec-----CCCcEEEEec---------ccchhheecccC------
Confidence 46889998642 1 345556555 6665443 232 2357799998 488888888854
Q ss_pred ccEEEEEEEeecCceEEEccccC-eEEEEeC--CeEEEEEccCCeeeeEEeecC
Q 000545 1144 NLVTEVYSKELKGAISALASLQG-HLLIASG--PKIILHKWTGTELNGIAFYDA 1194 (1432)
Q Consensus 1144 ~~l~~v~~~~~~g~V~al~~~~g-~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~ 1194 (1432)
.++--..-..+.|.+.+|....+ .+++..| .-|+||+.+..+|+-+++...
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 12322334668899999987755 7887777 678999999888887776655
No 107
>PHA02713 hypothetical protein; Provisional
Probab=66.88 E-value=90 Score=40.10 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=61.4
Q ss_pred eEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-Eecc---ccE-EEEEEeccc-CEEEEeeeccCCccEEEEEEE
Q 000545 1175 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIH---KSI-YFLSWKEQG-AQLNLLAKDFGSLDCFATEFL 1248 (1432)
Q Consensus 1175 ~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~~---~Sv-~ll~~~~~~-~~l~~~arD~~~~~vta~~fl 1248 (1432)
++..|+...+++..++-+.. +-.-.++.+.++.|+| |... ... .+.+|+++. ++-..++.=..+|...++. .
T Consensus 433 ~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-L 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-E
Confidence 46778888777877766544 3333456677887654 5321 112 357899998 7888888767777766666 3
Q ss_pred EcCCeeEEEEEecCCcEEEEeeCCCC
Q 000545 1249 IDGSTLSLVVSDEQKNIQIFYYAPKM 1274 (1432)
Q Consensus 1249 ~d~~~l~~l~~D~~gNl~vl~~~p~~ 1274 (1432)
++ +.|+++|+.. |.-.+-.|+|..
T Consensus 511 ~~-~~iyv~Gg~~-~~~~~e~yd~~~ 534 (557)
T PHA02713 511 HD-NTIMMLHCYE-SYMLQDTFNVYT 534 (557)
T ss_pred EC-CEEEEEeeec-ceeehhhcCccc
Confidence 44 6887776643 443455677754
No 108
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.28 E-value=3.3e+02 Score=33.81 Aligned_cols=211 Identities=14% Similarity=0.143 Sum_probs=102.0
Q ss_pred eEEEEeCCCceEEEEeCCceEEeeccCCCceEEEeeccCCCCCceEEEEEecCeEEEEE-cCCCCccCCCcceEEEeeCC
Q 000545 924 QGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQ-LPSGSTYDNYWPVQKVIPLK 1002 (1432)
Q Consensus 924 ~~Vf~~g~rP~~i~~~~~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~I~~-l~~~~~~d~~~~ir~~i~L~ 1002 (1432)
+.|.+||+.-+.||...+ ++-... .. ... .-|.+ .+.|.+..+.+.+.|.+ +.. -.+++ +++.
T Consensus 45 r~v~V~g~geY~iyt~~~-~r~k~~-G~-g~~--~vw~~---~n~yAv~~~~~~I~I~kn~~~-------~~~k~-i~~~ 108 (443)
T PF04053_consen 45 RFVLVCGDGEYEIYTALA-WRNKAF-GS-GLS--FVWSS---RNRYAVLESSSTIKIYKNFKN-------EVVKS-IKLP 108 (443)
T ss_dssp SEEEEEETTEEEEEETTT-TEEEEE-EE--SE--EEE-T---SSEEEEE-TTS-EEEEETTEE--------TT------S
T ss_pred CEEEEEcCCEEEEEEccC-Cccccc-Cc-eeE--EEEec---CccEEEEECCCeEEEEEcCcc-------ccceE-EcCC
Confidence 577779999988877422 211111 10 111 11222 34566666667788853 221 24567 8888
Q ss_pred CcccEEEEeCCCCeEEEEEeecccccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeee
Q 000545 1003 ATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRA 1082 (1432)
Q Consensus 1003 ~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~ 1082 (1432)
.++.+|-+ ..++++..+ .+|.++|-. +.+.+.
T Consensus 109 ~~~~~If~---G~LL~~~~~-----------------------------------------~~i~~yDw~----~~~~i~ 140 (443)
T PF04053_consen 109 FSVEKIFG---GNLLGVKSS-----------------------------------------DFICFYDWE----TGKLIR 140 (443)
T ss_dssp S-EEEEE----SSSEEEEET-----------------------------------------TEEEEE-TT----T--EEE
T ss_pred cccceEEc---CcEEEEECC-----------------------------------------CCEEEEEhh----Hcceee
Confidence 88888888 344444211 145666642 234566
Q ss_pred eEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeec-----CCCC-CccEEEEEEEeecC
Q 000545 1083 TIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRN-----ADNP-QNLVTEVYSKELKG 1156 (1432)
Q Consensus 1083 ~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~-----~~~~-~~~l~~v~~~~~~g 1156 (1432)
+++.. .++.|.+. +..+++++-| +-.+++++...+ +..+ +..+..+|+ +..
T Consensus 141 ~i~v~------~vk~V~Ws-----~~g~~val~t----------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~ 197 (443)
T PF04053_consen 141 RIDVS------AVKYVIWS-----DDGELVALVT----------KDSIYILKYNLEAVAAIPEEGVEDAFELIHE--ISE 197 (443)
T ss_dssp EESS-------E-EEEEE------TTSSEEEEE-----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S
T ss_pred EEecC------CCcEEEEE-----CCCCEEEEEe----------CCeEEEEEecchhcccccccCchhceEEEEE--ecc
Confidence 66544 24555664 2457787775 456777776543 2222 224777765 567
Q ss_pred ceEEEccccCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEe
Q 000545 1157 AISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWK 1224 (1432)
Q Consensus 1157 ~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~ 1224 (1432)
.|.+.+-.++-++-...+.|.. +-..+---.+.++. +.|+.......|++++-|-...|.-+..+
T Consensus 198 ~IkSg~W~~d~fiYtT~~~lkY--l~~Ge~~~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 198 RIKSGCWVEDCFIYTTSNHLKY--LVNGETGIIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --SEEEEETTEEEEE-TTEEEE--EETTEEEEEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eeEEEEEEcCEEEEEcCCeEEE--EEcCCcceEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 7777776777666666665543 55555556677777 88887766555777777766666555444
No 109
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=65.29 E-value=1.3e+02 Score=34.06 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred ecCceEEEccccC--eEEEEeC-CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEE--eccc---cEEEEEEe-
Q 000545 1154 LKGAISALASLQG--HLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG--DIHK---SIYFLSWK- 1224 (1432)
Q Consensus 1154 ~~g~V~al~~~~g--~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilvg--D~~~---Sv~ll~~~- 1224 (1432)
..|+|-++..=.. +|+.+.. +.+.+|+....+-+...-... +.-.+.-...+|+|++. +.|. .|+++..+
T Consensus 51 HtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~-~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 51 HTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNS-PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred CCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCC-eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Q ss_pred ------cccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000545 1225 ------EQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1298 (1432)
Q Consensus 1225 ------~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~ 1298 (1432)
.++--+.....| .-++.+..-.-+.. ++.++.+|+|..+. ...|+.+....+-|-. .||.|
T Consensus 130 ~~~~~~s~ep~~kI~t~~---skit~a~Wg~l~~~--ii~Ghe~G~is~~d-------a~~g~~~v~s~~~h~~-~Ind~ 196 (327)
T KOG0643|consen 130 DSSDIDSEEPYLKIPTPD---SKITSALWGPLGET--IIAGHEDGSISIYD-------ARTGKELVDSDEEHSS-KINDL 196 (327)
T ss_pred ChhhhcccCceEEecCCc---cceeeeeecccCCE--EEEecCCCcEEEEE-------cccCceeeechhhhcc-ccccc
Q ss_pred E
Q 000545 1299 L 1299 (1432)
Q Consensus 1299 ~ 1299 (1432)
+
T Consensus 197 q 197 (327)
T KOG0643|consen 197 Q 197 (327)
T ss_pred c
No 110
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=64.88 E-value=1.4e+02 Score=35.21 Aligned_cols=109 Identities=16% Similarity=0.077 Sum_probs=72.3
Q ss_pred cCceEEEccccC---eEEEEeC-CeEEEEEccCCeeeeEE-eecCCCeeEEEE--EEeCCEEEEEeccccEEEEEEeccc
Q 000545 1155 KGAISALASLQG---HLLIASG-PKIILHKWTGTELNGIA-FYDAPPLYVVSL--NIVKNFILLGDIHKSIYFLSWKEQG 1227 (1432)
Q Consensus 1155 ~g~V~al~~~~g---~Ll~~vg-~~l~v~~~~~~~L~~~a-~~~~~~~~i~sl--~~~~n~IlvgD~~~Sv~ll~~~~~~ 1227 (1432)
.++|.++. |.+ +|+.|.| +++++|++.-+.=...+ -.+. +|.++ ...+..|+-|-.-.+|.+ |++..
T Consensus 115 ~e~Vl~~~-fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~---WVlcvawsPDgk~iASG~~dg~I~l--wdpkt 188 (480)
T KOG0271|consen 115 GEAVLSVQ-FSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN---WVLCVAWSPDGKKIASGSKDGSIRL--WDPKT 188 (480)
T ss_pred CCcEEEEE-ecCCCceEEecCCCceEEeeccCCCCcceeecCCcc---EEEEEEECCCcchhhccccCCeEEE--ecCCC
Confidence 45676654 544 8888888 68999999865422222 2333 45444 456778888888888877 47666
Q ss_pred CEEEEeeeccCCccEEEEEEE----EcCCeeEEEEEecCCcEEEEee
Q 000545 1228 AQLNLLAKDFGSLDCFATEFL----IDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1228 ~~l~~~arD~~~~~vta~~fl----~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
++.+--+=-.+..|+++..+- .-+..+ +..+-++|+++|...
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~-las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRR-LASSSKDGSVRIWDT 234 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccc-eecccCCCCEEEEEc
Confidence 654433334578899999873 222333 678888999999864
No 111
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=64.56 E-value=67 Score=40.23 Aligned_cols=153 Identities=22% Similarity=0.103 Sum_probs=82.7
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC--eEEEEeC-CeEEEEEccC
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG--HLLIASG-PKIILHKWTG 1183 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g--~Ll~~vg-~~l~v~~~~~ 1183 (1432)
..++.|+|+- ..|.|.+|+...-...++. -++..-.-..++|..+....| +||-+.| +++++|++..
T Consensus 62 n~eHiLavad---------E~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 62 NKEHILAVAD---------EDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred CccceEEEec---------CCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence 3556667664 3688888887652211111 112222335789999988877 5776666 8999999998
Q ss_pred CeeeeEEeecCCCeeEEEEE------------EeCCEEEEEeccccE--EEEEEe--------cccCEEEEeeec-----
Q 000545 1184 TELNGIAFYDAPPLYVVSLN------------IVKNFILLGDIHKSI--YFLSWK--------EQGAQLNLLAKD----- 1236 (1432)
Q Consensus 1184 ~~L~~~a~~~~~~~~i~sl~------------~~~n~IlvgD~~~Sv--~ll~~~--------~~~~~l~~~arD----- 1236 (1432)
.+|.++..+-....-+-++. -.++-|++-|++-.- .+-+|+ ..+.-..++++-
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 88877632221011122221 124567777777655 222221 100011111111
Q ss_pred ----cCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1237 ----FGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1237 ----~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
...-.||.+.| .|+++|.-.++ .++-|-|+.+.
T Consensus 212 A~s~ti~ssvTvv~f-kDe~tlaSaga-~D~~iKVWDLR 248 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLF-KDESTLASAGA-ADSTIKVWDLR 248 (720)
T ss_pred cccCceeeeeEEEEE-eccceeeeccC-CCcceEEEeec
Confidence 11223677765 79999633333 58888888753
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=63.95 E-value=3.3e+02 Score=32.93 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=74.2
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEc-cccCe-EEEEeCCe-EEEEEccCCeeeeEEeecC-CCeeEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALA-SLQGH-LLIASGPK-IILHKWTGTELNGIAFYDA-PPLYVV 1200 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~-~~g~V~al~-~~~g~-Ll~~vg~~-l~v~~~~~~~L~~~a~~~~-~~~~i~ 1200 (1432)
..|-+.+|++.+... +...+ ..|||.+|. +=||| |+++.... |++|++.+.+..+.--++. .+.--.
T Consensus 367 ~d~~vkiwdlks~~~--------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~ 438 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTN--------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL 438 (506)
T ss_pred CCceEEEEEcCCccc--------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeE
Confidence 478999999986321 22222 468999987 23785 66777765 9999998765433322333 122333
Q ss_pred EEEEeCCEEEEEeccccEEEEEEecccCE--EEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEE
Q 000545 1201 SLNIVKNFILLGDIHKSIYFLSWKEQGAQ--LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIF 1268 (1432)
Q Consensus 1201 sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~--l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl 1268 (1432)
++..-|.++.+| -..|.++.|+....+ .+..-.|.. --.+.+.| -+... ++..+-.+.++.++
T Consensus 439 ~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v~F-g~~aq-~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 439 SFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIKELADHS-GLSTGVRF-GEHAQ-YLASTSMDAILRLY 503 (506)
T ss_pred EEcCCCCeEEee--cceeEEEEEecccccceeeehhhhcc-cccceeee-cccce-EEeeccchhheEEe
Confidence 444457777777 678888888754332 222222322 24567776 34333 13333345555444
No 113
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.84 E-value=1.6e+02 Score=36.83 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=74.7
Q ss_pred cEEEEEEEeecCceEEEc--cccCeEEEEeCCeE----------EEEEccCCeeeeEEeecC-CCeeEEE--EEEeCCEE
Q 000545 1145 LVTEVYSKELKGAISALA--SLQGHLLIASGPKI----------ILHKWTGTELNGIAFYDA-PPLYVVS--LNIVKNFI 1209 (1432)
Q Consensus 1145 ~l~~v~~~~~~g~V~al~--~~~g~Ll~~vg~~l----------~v~~~~~~~L~~~a~~~~-~~~~i~s--l~~~~n~I 1209 (1432)
+++++....+++-+.++. -.+++-+.++.+++ .+|+..++++.+++.... +++.|++ .....+++
T Consensus 195 klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kL 274 (545)
T PF11768_consen 195 KLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKL 274 (545)
T ss_pred cEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceE
Confidence 466666666655554433 12556777776663 679999888998887543 1444443 44467899
Q ss_pred EEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEee
Q 000545 1210 LLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1210 lvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
++|-.-.||.++ +. .......++-. .-.+.+....++.- |+++...|-|.+|..
T Consensus 275 vlGC~DgSiiLy--D~-~~~~t~~~ka~--~~P~~iaWHp~gai--~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 275 VLGCEDGSIILY--DT-TRGVTLLAKAE--FIPTLIAWHPDGAI--FVVGSEQGELQCFDM 328 (545)
T ss_pred EEEecCCeEEEE--Ec-CCCeeeeeeec--ccceEEEEcCCCcE--EEEEcCCceEEEEEe
Confidence 999999999986 43 22344444321 22334443345444 888999999999975
No 114
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=63.32 E-value=44 Score=41.60 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=59.2
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-C-eEEEEeCCeEEEEEccC-
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-G-HLLIASGPKIILHKWTG- 1183 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~-g-~Ll~~vg~~l~v~~~~~- 1183 (1432)
.+++.++|=|+.. -=.++.+.-+. .++| ..-...|-|+|-|--+ | ||++|+|+.++-|-|++
T Consensus 122 Pk~~iL~VLT~~d---------vSV~~sV~~d~----srVk--aDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 122 PKKAILTVLTARD---------VSVLPSVHCDS----SRVK--ADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CCCceEEEEecCc---------eeEeeeeeeCC----ceEE--EeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 3567777777532 22344443321 1232 2335678888888654 3 99999999999999985
Q ss_pred -CeeeeEEe---ecCCCeeEEEEEEeCC-EEEEE
Q 000545 1184 -TELNGIAF---YDAPPLYVVSLNIVKN-FILLG 1212 (1432)
Q Consensus 1184 -~~L~~~a~---~~~~~~~i~sl~~~~n-~Ilvg 1212 (1432)
|.|.+++| +|. ..||.+|..-.| .|+|+
T Consensus 187 qKtL~~CsfcPVFdv-~~~Icsi~AT~dsqVAva 219 (671)
T PF15390_consen 187 QKTLHRCSFCPVFDV-GGYICSIEATVDSQVAVA 219 (671)
T ss_pred hhhhhhCCcceeecC-CCceEEEEEeccceEEEE
Confidence 56888888 466 889999886544 45554
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=63.21 E-value=2.6e+02 Score=32.39 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=77.1
Q ss_pred EccccCeEEEEe-CCeEEEEEccCCe---ee-----eEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEE---ecccC
Q 000545 1161 LASLQGHLLIAS-GPKIILHKWTGTE---LN-----GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSW---KEQGA 1228 (1432)
Q Consensus 1161 l~~~~g~Ll~~v-g~~l~v~~~~~~~---L~-----~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~---~~~~~ 1228 (1432)
+++.++.+|-+. -.+|++|++.-++ ++ +++-+|- .|-+.++|-=-+.|.++-- +..+-
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp----------~GLifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDP----------EGLIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECC----------CCcEEEEecCCCeEEEEEecccCCCCc
Confidence 345677666544 4699999998433 21 2333433 2333333333333444322 33333
Q ss_pred EEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCC
Q 000545 1229 QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSS 1308 (1432)
Q Consensus 1229 ~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~~~l~~~~~ 1308 (1432)
+-..+-. ...-..+.++|--|+.. ++.++..+.++++. ...|..+.....+.-+..++ ....+.|.
T Consensus 178 ~tf~i~~-~~~~ew~~l~FS~dGK~--iLlsT~~s~~~~lD-------Af~G~~~~tfs~~~~~~~~~--~~a~ftPd-- 243 (311)
T KOG1446|consen 178 TTFSITD-NDEAEWTDLEFSPDGKS--ILLSTNASFIYLLD-------AFDGTVKSTFSGYPNAGNLP--LSATFTPD-- 243 (311)
T ss_pred eeEccCC-CCccceeeeEEcCCCCE--EEEEeCCCcEEEEE-------ccCCcEeeeEeeccCCCCcc--eeEEECCC--
Confidence 3333322 34445689999778877 78899999999985 22355454444443333222 11122331
Q ss_pred CCCCCCCCCCCCCceEEEEEecCCcEEEEEe
Q 000545 1309 DRTGAAPGSDKTNRFALLFGTLDGSIGCIAP 1339 (1432)
Q Consensus 1309 ~~~~~~~g~~~~~~~~il~~t~~GsIg~l~p 1339 (1432)
..-|+.|.-+|.|.+---
T Consensus 244 -------------s~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 244 -------------SKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred -------------CcEEEEecCCCcEEEEEc
Confidence 356777777899876543
No 116
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=62.01 E-value=2.6e+02 Score=31.12 Aligned_cols=133 Identities=6% Similarity=0.008 Sum_probs=69.1
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC---eEEEEeCCeEEEEEccCCeeeeE--EeecCCCeeEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG---HLLIASGPKIILHKWTGTELNGI--AFYDAPPLYVV 1200 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g---~Ll~~vg~~l~v~~~~~~~L~~~--a~~~~~~~~i~ 1200 (1432)
..|++.+|++... + +...-+..||++++--++ -|+-+.++.|++.+-+..+|++. ....+ ..-+-
T Consensus 163 ~DGtvRtydiR~G-----~----l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-eykld 232 (307)
T KOG0316|consen 163 VDGTVRTYDIRKG-----T----LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-EYKLD 232 (307)
T ss_pred cCCcEEEEEeecc-----e----eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-eeeee
Confidence 5899999999652 1 344557789999884432 46666789999988776665541 11111 10010
Q ss_pred EEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1201 SLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1201 sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
+--...+-++++-.-++..++ |+-.+.+++.--+-.....++.+.+..-... |+.+-..+-++.++++
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~-wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~--f~~A~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYF-WDLVDETQISKLSVVSTVIVTDLSCHPTMDD--FITATGHGDLFWYQEN 300 (307)
T ss_pred eeecccceeEEeccCCceEEE-EEeccceeeeeeccCCceeEEeeecccCccc--eeEecCCceeceeehh
Confidence 111122344444444444333 3433333322222223333555555444445 5555556666666543
No 117
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=61.50 E-value=1.4e+02 Score=37.08 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=88.1
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc--cccCeEEE-EeCC---eEEEEEc
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA--SLQGHLLI-ASGP---KIILHKW 1181 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~--~~~g~Ll~-~vg~---~l~v~~~ 1181 (1432)
...+++-|- -..++.+|+... ++.++ +-.+.+++|.||+ +++.-||| |-|. .|++|..
T Consensus 312 d~~~lASGg---------nDN~~~Iwd~~~----~~p~~---~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 312 DGNQLASGG---------NDNVVFIWDGLS----PEPKF---TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred CCCeeccCC---------CccceEeccCCC----ccccE---EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 356777765 356888888832 11222 3367889999986 55555554 4443 4566666
Q ss_pred cCCeeeeEEeecCCCeeEEEEEEeCCE--EE--EEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEE
Q 000545 1182 TGTELNGIAFYDAPPLYVVSLNIVKNF--IL--LGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLV 1257 (1432)
Q Consensus 1182 ~~~~L~~~a~~~~~~~~i~sl~~~~n~--Il--vgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l 1257 (1432)
...+ ..-..++ ...|.+|.-.+.. |+ .|....-|.+.+|-. -.++..+.- +..-|.....-.|+.+ ++
T Consensus 376 ~~g~--~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~g--H~~RVl~la~SPdg~~--i~ 447 (484)
T KOG0305|consen 376 NTGA--RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELLG--HTSRVLYLALSPDGET--IV 447 (484)
T ss_pred CCCc--Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeecC--CcceeEEEEECCCCCE--EE
Confidence 5443 2334566 7889988876543 44 678888899988853 222222222 2222777764456667 88
Q ss_pred EEecCCcEEEEeeCC
Q 000545 1258 VSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1258 ~~D~~gNl~vl~~~p 1272 (1432)
.+..+.||.++..-+
T Consensus 448 t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 448 TGAADETLRFWNLFD 462 (484)
T ss_pred EecccCcEEeccccC
Confidence 899999999988644
No 118
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=61.42 E-value=93 Score=34.25 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=43.2
Q ss_pred EEEEeecCceEEE--ccccCeEEEEeCCeEEEEEccCCee--eeEEeecC--------CCeeEEEEEEeCCEEEEEec
Q 000545 1149 VYSKELKGAISAL--ASLQGHLLIASGPKIILHKWTGTEL--NGIAFYDA--------PPLYVVSLNIVKNFILLGDI 1214 (1432)
Q Consensus 1149 v~~~~~~g~V~al--~~~~g~Ll~~vg~~l~v~~~~~~~L--~~~a~~~~--------~~~~i~sl~~~~n~IlvgD~ 1214 (1432)
+-+.+.+-++.+| |++.|.|++|.++++.+|.+..+.. .+..++|. .....+.+...+++|.+-+-
T Consensus 128 iiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~ 205 (215)
T PF14761_consen 128 IIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMSD 205 (215)
T ss_pred EEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEecC
Confidence 4455666666655 5789999999999999999975433 11222221 13446677777888876543
No 119
>PHA03098 kelch-like protein; Provisional
Probab=60.59 E-value=76 Score=40.48 Aligned_cols=111 Identities=12% Similarity=0.008 Sum_probs=62.3
Q ss_pred EccccCeEEEEeC-------CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-Eeccc----cEEEEEEecccC
Q 000545 1161 LASLQGHLLIASG-------PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHK----SIYFLSWKEQGA 1228 (1432)
Q Consensus 1161 l~~~~g~Ll~~vg-------~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~~~----Sv~ll~~~~~~~ 1228 (1432)
++.++|+|.+.-| +.+..|+...+++...+-... +-+-.+..+.++.|+| |=..+ .=.+..|++..+
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 3445666555444 346678777776665554433 3333444556776655 32111 124567888888
Q ss_pred EEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCc-----EEEEeeCCCC
Q 000545 1229 QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKN-----IQIFYYAPKM 1274 (1432)
Q Consensus 1229 ~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gN-----l~vl~~~p~~ 1274 (1432)
+-..++.-+.++...++. ..++.|+++|+....+ -.++.|+|..
T Consensus 417 ~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred eeeecCCCCccccCceEE--EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 887777656666555544 3456887777643211 1255666653
No 120
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=60.06 E-value=2.7e+02 Score=30.66 Aligned_cols=171 Identities=9% Similarity=0.064 Sum_probs=89.0
Q ss_pred EEEEEeccCCCCCCceeeeeEECCC-CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCC
Q 000545 1064 YEVRILEPDRAGGPWQTRATIPMQS-SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNP 1142 (1432)
Q Consensus 1064 ~~v~l~dp~~~~~~~~~~~~~~l~~-~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~ 1142 (1432)
+.|..+|+.++ +.+-++.+.+ .....+..+. ...++++++ ..|.|+.|++..
T Consensus 3 g~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~---------~~~~v~~~~---------~~~~l~~~d~~t----- 55 (238)
T PF13360_consen 3 GTLSALDPRTG----KELWSYDLGPGIGGPVATAVP---------DGGRVYVAS---------GDGNLYALDAKT----- 55 (238)
T ss_dssp SEEEEEETTTT----EEEEEEECSSSCSSEEETEEE---------ETTEEEEEE---------TTSEEEEEETTT-----
T ss_pred CEEEEEECCCC----CEEEEEECCCCCCCccceEEE---------eCCEEEEEc---------CCCEEEEEECCC-----
Confidence 36778888654 5555566644 2222211111 134566664 478888888743
Q ss_pred CccEEEEEEEeecCceEEE-ccccCeEEEEe-CCeEEEEEccCCeeeeEE-ee--cCCC-eeEEEEEEeCCEEEEEeccc
Q 000545 1143 QNLVTEVYSKELKGAISAL-ASLQGHLLIAS-GPKIILHKWTGTELNGIA-FY--DAPP-LYVVSLNIVKNFILLGDIHK 1216 (1432)
Q Consensus 1143 ~~~l~~v~~~~~~g~V~al-~~~~g~Ll~~v-g~~l~v~~~~~~~L~~~a-~~--~~~~-~~i~sl~~~~n~IlvgD~~~ 1216 (1432)
-+++.+.+..+++... ...+++++++. ++.|+.++....+++-.. .. ...+ .......+.++++++++.-.
T Consensus 56 ---G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 56 ---GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp ---SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred ---CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 2345555555443332 34567777776 456777776655544332 21 1101 11223444589999998844
Q ss_pred cEEEEEEecccCEEEEeeeccCCcc---E-----EEEEEEEcCCeeEEEEEecCCcEEEE
Q 000545 1217 SIYFLSWKEQGAQLNLLAKDFGSLD---C-----FATEFLIDGSTLSLVVSDEQKNIQIF 1268 (1432)
Q Consensus 1217 Sv~ll~~~~~~~~l~~~arD~~~~~---v-----ta~~fl~d~~~l~~l~~D~~gNl~vl 1268 (1432)
.+ +.++.+.+++.--..=..+.. + .....+++++. +.++..+|.++.+
T Consensus 133 ~l--~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 133 KL--VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGR--VYVSSGDGRVVAV 188 (238)
T ss_dssp EE--EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTE--EEEECCTSSEEEE
T ss_pred cE--EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCE--EEEEcCCCeEEEE
Confidence 44 556877776633322222221 1 12232455555 6677777775444
No 121
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=59.97 E-value=1.5e+02 Score=34.63 Aligned_cols=147 Identities=21% Similarity=0.276 Sum_probs=85.5
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc--------cCeEEEEeCCeEEEE
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL--------QGHLLIASGPKIILH 1179 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~--------~g~Ll~~vg~~l~v~ 1179 (1432)
.+..++||- +.|.+.+|+.... ..| .+++|+...+..+ .+-+.++.-..|++|
T Consensus 39 ~e~~vav~l---------Sngsv~lyd~~tg-----~~l-----~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 39 FETAVAVSL---------SNGSVRLYDKGTG-----QLL-----EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cceeEEEEe---------cCCeEEEEeccch-----hhh-----heecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 346677776 5888999887541 112 2344444444332 234456666799999
Q ss_pred EccCC-eeeeEEeecCC--CeeEEEEEEeCCEEEEEec----cccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1180 KWTGT-ELNGIAFYDAP--PLYVVSLNIVKNFILLGDI----HKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1180 ~~~~~-~L~~~a~~~~~--~~~i~sl~~~~n~IlvgD~----~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
++... +.-+..+-..- +.....+.+.++.|..|.- +-+|.|+-++. ..++.-.--|.+.-.||++.|...+.
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~-~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRS-EQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecc-ccchhhhhhhhccCcceeEEecCCCC
Confidence 99743 23333333220 2222234446788888843 33444443333 23332233355566799999988777
Q ss_pred eeEEEEEecCCcEEEEeeCCCCC
Q 000545 1253 TLSLVVSDEQKNIQIFYYAPKMS 1275 (1432)
Q Consensus 1253 ~l~~l~~D~~gNl~vl~~~p~~~ 1275 (1432)
.| ++.+--+|=+-+|....++.
T Consensus 179 nl-LlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 179 NL-LLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred Ce-EEeecccceEEeeecCCCcc
Confidence 76 78888899999988655543
No 122
>PHA02790 Kelch-like protein; Provisional
Probab=59.77 E-value=1.8e+02 Score=36.61 Aligned_cols=94 Identities=12% Similarity=-0.037 Sum_probs=61.1
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCe
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGST 1253 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~ 1253 (1432)
+.+..|+...+++..++.... +-+-..+.+.++.|+|-- + ..-.|+++.++-..++.=..+|.-.++. .++ +.
T Consensus 376 ~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~~~IYv~G---G-~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~-~~ 448 (480)
T PHA02790 376 TTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFGRRLFLVG---R-NAEFYCESSNTWTLIDDPIYPRDNPELI-IVD-NK 448 (480)
T ss_pred ccEEEEeCCCCEEEeCCCCCC-ccccceEEEECCEEEEEC---C-ceEEecCCCCcEeEcCCCCCCccccEEE-EEC-CE
Confidence 456778887777877766655 555556677888776521 1 2345788888888888766777666665 345 57
Q ss_pred eEEEEEecCCc--EEEEeeCCCC
Q 000545 1254 LSLVVSDEQKN--IQIFYYAPKM 1274 (1432)
Q Consensus 1254 l~~l~~D~~gN--l~vl~~~p~~ 1274 (1432)
|+++|+...+. -.+-.|+|+.
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEECCcCCCcccceEEEEECCC
Confidence 88888754322 1345567654
No 123
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=59.54 E-value=4.1e+02 Score=32.63 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=34.6
Q ss_pred CCceEEEE-EecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEeCCCCeEEEEEe
Q 000545 965 CNHGFIYV-TSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVS 1022 (1432)
Q Consensus 965 ~~~g~i~~-~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~~~~~~~v~~s 1022 (1432)
|.+..|+- ...|.+.|-.+-..++ ...-+ ++-|...|.+-|++..+.+.++.+
T Consensus 131 ~~DeyiAsvs~gGdiiih~~~t~~~----tt~f~-~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 131 NTDEYIASVSDGGDIIIHGTKTKQK----TTTFT-IDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred CCcceeEEeccCCcEEEEecccCcc----cccee-cCCCCeEEEeecccccceeeEeec
Confidence 33334433 3466788877766554 23335 777788888889998887777654
No 124
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=58.74 E-value=1e+02 Score=35.28 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=85.5
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-C-eE-EEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEE
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-G-HL-LIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLN 1203 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~-g-~L-l~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~ 1203 (1432)
-|.+.+|++.... .+.--...+..|||.++|--+ | ++ ..+....+.+|+|...++..++-.+. |.- .+.
T Consensus 49 D~tVR~wevq~~g-----~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~-pvk--t~~ 120 (347)
T KOG0647|consen 49 DGTVRIWEVQNSG-----QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA-PVK--TCH 120 (347)
T ss_pred CCceEEEEEecCC-----cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccc-cee--EEE
Confidence 5788899997631 121123345789999999554 3 33 34456889999999999999999988 544 344
Q ss_pred EeCC----EEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEee
Q 000545 1204 IVKN----FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1204 ~~~n----~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
.+++ .++-|---|.+-|. + .++=.+++.=-.|--|+|++. -+.- .+++-.+.+|.+|.+
T Consensus 121 wv~~~~~~cl~TGSWDKTlKfW--D--~R~~~pv~t~~LPeRvYa~Dv--~~pm--~vVata~r~i~vynL 183 (347)
T KOG0647|consen 121 WVPGMNYQCLVTGSWDKTLKFW--D--TRSSNPVATLQLPERVYAADV--LYPM--AVVATAERHIAVYNL 183 (347)
T ss_pred EecCCCcceeEecccccceeec--c--cCCCCeeeeeeccceeeehhc--cCce--eEEEecCCcEEEEEc
Confidence 4443 45677666777664 3 223344555556777888883 3334 577888889999887
No 125
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=57.64 E-value=2.8e+02 Score=30.10 Aligned_cols=136 Identities=19% Similarity=0.246 Sum_probs=73.3
Q ss_pred eEEEEEeeeecC-CCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--ccCeEEEEeC---CeEEEEEccC
Q 000545 1110 TLLAIGTAYVQG-EDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--LQGHLLIASG---PKIILHKWTG 1183 (1432)
Q Consensus 1110 ~~lvVGT~~~~~-e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~--~~g~Ll~~vg---~~l~v~~~~~ 1183 (1432)
.||+|=|....+ .....-|..-+|.+..... + .+ ..+.+-+|+|.+++- -+.++++..| .++.+|+...
T Consensus 18 ~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~---~~-~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~ 92 (194)
T PF08662_consen 18 DYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-P---VE-SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG 92 (194)
T ss_pred CEEEEEEEEeeccCcceEEeeEEEEEEecCCC-c---cc-eeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc
Confidence 455555542211 2233346777787754211 1 22 222334678998872 2346666655 4799999974
Q ss_pred CeeeeEEeecCCCeeEEEEEEeCCEEEEEeccc---cEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEe
Q 000545 1184 TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHK---SIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD 1260 (1432)
Q Consensus 1184 ~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~---Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D 1260 (1432)
+.+.. +-.. +.-.+.-...|+++++|..-. .|.| |+.... ..++....+ .++.+++-.|+.. ++.+.
T Consensus 93 ~~i~~--~~~~-~~n~i~wsP~G~~l~~~g~~n~~G~l~~--wd~~~~--~~i~~~~~~-~~t~~~WsPdGr~--~~ta~ 162 (194)
T PF08662_consen 93 KKIFS--FGTQ-PRNTISWSPDGRFLVLAGFGNLNGDLEF--WDVRKK--KKISTFEHS-DATDVEWSPDGRY--LATAT 162 (194)
T ss_pred cEeEe--ecCC-CceEEEECCCCCEEEEEEccCCCcEEEE--EECCCC--EEeeccccC-cEEEEEEcCCCCE--EEEEE
Confidence 43322 1122 333344556789999987543 2555 454433 334443333 4788888777777 44444
No 126
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=55.39 E-value=2e+02 Score=31.93 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=76.6
Q ss_pred cCeEEEEeC-CeEEEEEccCCeeeeEEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEec---ccCEEEEeeeccCC
Q 000545 1165 QGHLLIASG-PKIILHKWTGTELNGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKE---QGAQLNLLAKDFGS 1239 (1432)
Q Consensus 1165 ~g~Ll~~vg-~~l~v~~~~~~~L~~~a~-~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~---~~~~l~~~arD~~~ 1239 (1432)
|.++..|-| ..+++|+....+..++-. ... +...+.-.-.-..++-|-+-.|+.+.--+. +|-++.--|+|
T Consensus 71 nskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--- 146 (307)
T KOG0316|consen 71 NSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--- 146 (307)
T ss_pred ccccccCCCCceEEEEEcccCeeeeecccccc-eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC---
Confidence 345655555 457889998766544322 222 222222222223555566666777654432 23333333444
Q ss_pred ccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCC
Q 000545 1240 LDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDK 1319 (1432)
Q Consensus 1240 ~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~ 1319 (1432)
-|.++. +.+.. |+++-.+|++.+|.. |.-....=++|+.||+..- .+.
T Consensus 147 -~V~Si~--v~~he--IvaGS~DGtvRtydi-----------R~G~l~sDy~g~pit~vs~---s~d------------- 194 (307)
T KOG0316|consen 147 -GVSSID--VAEHE--IVAGSVDGTVRTYDI-----------RKGTLSSDYFGHPITSVSF---SKD------------- 194 (307)
T ss_pred -ceeEEE--ecccE--EEeeccCCcEEEEEe-----------ecceeehhhcCCcceeEEe---cCC-------------
Confidence 366666 45555 899999999999964 2334555689999999752 221
Q ss_pred CCceEEEEEecCCcEEE
Q 000545 1320 TNRFALLFGTLDGSIGC 1336 (1432)
Q Consensus 1320 ~~~~~il~~t~~GsIg~ 1336 (1432)
....+.++++++|-.
T Consensus 195 --~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 195 --GNCSLASSLDSTLRL 209 (307)
T ss_pred --CCEEEEeeccceeee
Confidence 346777766666543
No 127
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=54.83 E-value=6.7 Score=49.92 Aligned_cols=92 Identities=15% Similarity=-0.026 Sum_probs=67.4
Q ss_pred ceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEEeeeecCcccccccCCCcccc
Q 000545 99 ASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFA 178 (1432)
Q Consensus 99 ~~L~~v~~~~l~G~I~~l~~~r~~~~~~~~~~D~Lll~~~~~klsil~~d~~~~~l~t~Slh~~E~~~~~~~~~g~~~~~ 178 (1432)
.-|++..+.+.||+|. +..+.-.+. + .-.++-||++.+|||+.. +-++|++|+- ...-.-..-
T Consensus 87 s~lrf~sq~n~f~Tis-lhyyeGKfk----g----ksLvelak~stle~D~~s----scaLlfneDi----~~flpfhvn 149 (1319)
T COG5161 87 SLLRFDSQANEFRTIS-LHYYEGKFK----G----KSLVELAKFSTLEFDIRS----SCALLFNEDI----GNFLPFHVN 149 (1319)
T ss_pred EEEEehhhcccceeEE-EeeeccccC----C----chhhhhhhhhheeeccCc----cchhhhhhhh----hhccccccc
Confidence 3488888999999998 887766554 3 334678999999999987 4479998883 111111112
Q ss_pred CCCeEEECCCCcEEEEEecCceEEEEeCc
Q 000545 179 RGPLVKVDPQGRCGGVLVYGLQMIILKAS 207 (1432)
Q Consensus 179 ~~~~l~vDP~~Rc~~l~~y~~~l~ilp~~ 207 (1432)
...-..|||+.-|.++......+.|+|..
T Consensus 150 kndddev~~d~D~~~~~~~~~h~~i~psq 178 (1319)
T COG5161 150 KNDDDEVRIDVDLGMFQMSKRHFSIFPSQ 178 (1319)
T ss_pred CCccccccccccccHHHHHHHHhhcCCCC
Confidence 23567899999999998888999998853
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.48 E-value=3.2e+02 Score=33.14 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=51.0
Q ss_pred CceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEee-cCCCCC--------ccEE
Q 000545 1077 PWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR-NADNPQ--------NLVT 1147 (1432)
Q Consensus 1077 ~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~-~~~~~~--------~~l~ 1147 (1432)
+|=+-|-+-| .+.++|++-+... ...++.-.|++|||- .--|.||++.- +.--|. ++.+
T Consensus 163 nlYvHHD~il--pafPLC~ewld~~-~~~~~~gNyvAiGtm---------dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~ 230 (463)
T KOG0270|consen 163 NLYVHHDFIL--PAFPLCIEWLDHG-SKSGGAGNYVAIGTM---------DPEIEIWDLDIVDAVLPCVTLGSKASKKKK 230 (463)
T ss_pred ceeEecceec--cCcchhhhhhhcC-CCCCCCcceEEEecc---------CceeEEeccccccccccceeechhhhhhhh
Confidence 4444343333 4577888766652 223335579999994 22688887753 111110 0111
Q ss_pred EE-----EEEeecCceEEEccccC--eEEEEeC--CeEEEEEccC
Q 000545 1148 EV-----YSKELKGAISALASLQG--HLLIASG--PKIILHKWTG 1183 (1432)
Q Consensus 1148 ~v-----~~~~~~g~V~al~~~~g--~Ll~~vg--~~l~v~~~~~ 1183 (1432)
.. ...-...+|.+|..-.. .+||+-+ ++|.+|++..
T Consensus 231 k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~ 275 (463)
T KOG0270|consen 231 KKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT 275 (463)
T ss_pred hhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC
Confidence 11 11123456667664322 4665544 7999999975
No 129
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=52.64 E-value=4.8e+02 Score=31.31 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=51.3
Q ss_pred cCeEEEE-eCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEE
Q 000545 1165 QGHLLIA-SGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCF 1243 (1432)
Q Consensus 1165 ~g~Ll~~-vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vt 1243 (1432)
+++++++ .+..++.|+....+++=.... +. .....+.+++|++++....+..+ +...+++.---.+.......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~~-~~~p~~~~~~vyv~~~~G~l~~~--d~~tG~~~W~~~~~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA---SS-YQGPAVDDNRLYVTDADGVVVAL--DRRSGSELWKNDELKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc---CC-ccCceEeCCEEEEECCCCeEEEE--ECCCCcEEEccccccCCccc
Confidence 5666654 456888888865443221111 11 12334568899998855555444 55444433211121112222
Q ss_pred EEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1244 ATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1244 a~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
+. .+.++. +++++.+|.|++++
T Consensus 315 sp--~i~g~~--l~~~~~~G~l~~~d 336 (377)
T TIGR03300 315 AP--AVVGGY--LVVGDFEGYLHWLS 336 (377)
T ss_pred cC--EEECCE--EEEEeCCCEEEEEE
Confidence 22 245566 66789999999986
No 130
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.60 E-value=85 Score=34.94 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=65.9
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEccc---cCeEEEEe--CCeEEEEEccCCeeeeEEeecCCCeeE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALASL---QGHLLIAS--GPKIILHKWTGTELNGIAFYDAPPLYV 1199 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~-~~~~g~V~al~~~---~g~Ll~~v--g~~l~v~~~~~~~L~~~a~~~~~~~~i 1199 (1432)
+.|-|.+|++..+.. .+++.+ +-.+|||..+.-- -|.|||+. ..||.||+-+..+..+...+.....-|
T Consensus 31 SD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SV 105 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASV 105 (299)
T ss_pred CCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccc
Confidence 467889999976421 333333 3468999988733 46677665 479999999887776665543324455
Q ss_pred EEEEEe----CCEEEEEeccccEEEEEEecc
Q 000545 1200 VSLNIV----KNFILLGDIHKSIYFLSWKEQ 1226 (1432)
Q Consensus 1200 ~sl~~~----~n~IlvgD~~~Sv~ll~~~~~ 1226 (1432)
.++.-. +=.+++|-.--.|.+|.|+.+
T Consensus 106 NsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred eeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 555542 447778888889999999877
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=52.35 E-value=1.6e+02 Score=37.58 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=66.4
Q ss_pred EEEeCCeEEEEEccCCeeee--EEee-c-CCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccC-CccEE
Q 000545 1169 LIASGPKIILHKWTGTELNG--IAFY-D-APPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFG-SLDCF 1243 (1432)
Q Consensus 1169 l~~vg~~l~v~~~~~~~L~~--~a~~-~-~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~-~~~vt 1243 (1432)
.+|...+|+||++...++.+ +... + . -..=+.+..-+.+|+..-.-|-+.|+-|-. + +.+|+-+. .--||
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG-~lIKv~lDPSgiY~atScsdktl~~~Df~s--g--EcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEG-DLIKVILDPSGIYLATSCSDKTLCFVDFVS--G--ECVAQMTGHSEAVT 687 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCC-ceEEEEECCCccEEEEeecCCceEEEEecc--c--hhhhhhcCcchhee
Confidence 36667899999998765443 2222 2 2 222234555688888888889999987752 2 34566553 45689
Q ss_pred EEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1244 ATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1244 a~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.+.|+-|=.. +|..-.+|-|||++.+
T Consensus 688 G~kF~nDCkH--lISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 688 GVKFLNDCKH--LISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeecccchh--heeecCCceEEEEECc
Confidence 9999666666 7888899999999865
No 132
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.40 E-value=2.3e+02 Score=34.16 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=38.5
Q ss_pred EEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEeeec
Q 000545 753 YSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRW 832 (1432)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 832 (1432)
++..|..||.|+||.|.+..-+ ..|+. ++-.|.+|. |
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~---a~Fpg-------------------------------------ht~~vk~i~---F 397 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNV---AKFPG-------------------------------------HTGPVKAIS---F 397 (506)
T ss_pred EEeccCCCceEEEEEcCCcccc---ccCCC-------------------------------------CCCceeEEE---e
Confidence 4444789999999999875422 23421 123355554 3
Q ss_pred cCCCCccEEEEEeeCCeEEEEEE
Q 000545 833 SAHHSRPFLFAILTDGTILCYQA 855 (1432)
Q Consensus 833 g~~~~~~~L~vgl~~G~l~~y~~ 855 (1432)
+ ++..||.++..||.+..+.+
T Consensus 398 s--ENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 398 S--ENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred c--cCceEEEEEecCCeEEEEEe
Confidence 2 45789999999998877665
No 133
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=50.38 E-value=2e+02 Score=33.08 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=67.2
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc--cCeEEEEeC--CeEEEEEccCCeeeeEEeecC---CCee
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL--QGHLLIASG--PKIILHKWTGTELNGIAFYDA---PPLY 1198 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~--~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~---~~~~ 1198 (1432)
..|.|.+|+=+.+. =++-+ .....|+-.+=..| ||+.+.+.| +.+++|++...+.+..-.-.. -+-+
T Consensus 281 kDG~IklwDGVS~r-----Cv~t~-~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~ 354 (430)
T KOG0640|consen 281 KDGAIKLWDGVSNR-----CVRTI-GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKH 354 (430)
T ss_pred cCCcEEeeccccHH-----HHHHH-HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhh
Confidence 57899999765421 01111 11222322222233 777776666 678899998766443211100 0011
Q ss_pred EEEEE--EeCCEEEEEeccccEEEEEEecc---cCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1199 VVSLN--IVKNFILLGDIHKSIYFLSWKEQ---GAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1199 i~sl~--~~~n~IlvgD~~~Sv~ll~~~~~---~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
-+... --.++++.=|- +|.++..|+.. ...|..++.....||++..- .+.- ++-++|.+.-=|-++
T Consensus 355 rtqAvFNhtEdyVl~pDE-as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP---~~p~-FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPDE-ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP---VEPA-FMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhcCccceEEcccc-ccCceeeccccchhhhhhcccCCCCCceEEEeCC---CCCc-eeeecccceeeeeee
Confidence 11100 12457766663 56677788753 33556666677788887653 2222 244566655444444
No 134
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=50.17 E-value=55 Score=41.52 Aligned_cols=128 Identities=22% Similarity=0.323 Sum_probs=85.5
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee--cCceEEEccc-c
Q 000545 1089 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL--KGAISALASL-Q 1165 (1432)
Q Consensus 1089 ~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~--~g~V~al~~~-~ 1165 (1432)
.+.++|++++. ....++|.||+ +||+-||.+.++ . | ..+.++...+. +--|+||+-- +
T Consensus 75 ~~~~~~~~~vs-------~~e~lvAagt~---------~g~V~v~ql~~~-~-p-~~~~~~t~~d~~~~~rVTal~Ws~~ 135 (726)
T KOG3621|consen 75 ATGITCVRSVS-------SVEYLVAAGTA---------SGRVSVFQLNKE-L-P-RDLDYVTPCDKSHKCRVTALEWSKN 135 (726)
T ss_pred ccceEEEEEec-------chhHhhhhhcC---------CceEEeehhhcc-C-C-CcceeeccccccCCceEEEEEeccc
Confidence 45566666553 34678888884 999999999873 2 1 23666666666 8899999965 3
Q ss_pred C-eEEEEeC-CeEEEEEccCCe--eeeEEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCC
Q 000545 1166 G-HLLIASG-PKIILHKWTGTE--LNGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGS 1239 (1432)
Q Consensus 1166 g-~Ll~~vg-~~l~v~~~~~~~--L~~~a~-~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~ 1239 (1432)
| ++..|-- .+|..-+++... +-+.-. +.. ...|++|.....+++|+.+.+++-+ +.|..++..+++-...
T Consensus 136 ~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~q~~LLVStl~r~~Lc---~tE~eti~QIG~k~R~ 210 (726)
T KOG3621|consen 136 GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYLQSYLLVSTLTRCILC---QTEAETITQIGKKPRK 210 (726)
T ss_pred ccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeecccceehHhhhhhhhee---ecchhHHHHhcCCCcC
Confidence 4 5666644 466666776521 111111 233 7789999999999999999999865 4455556666654443
No 135
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=49.76 E-value=4.4e+02 Score=29.97 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=51.3
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccE-EEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCe
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLV-TEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTE 1185 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l-~~v~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~ 1185 (1432)
....+++|.. +-+|++|++.... .+. +.+.+..+.+.+++|+-++++|++|......++++....
T Consensus 103 ~~~~~L~va~----------kk~i~i~~~~~~~----~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~ 168 (275)
T PF00780_consen 103 EGSRRLCVAV----------KKKILIYEWNDPR----NSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGS 168 (275)
T ss_pred ccceEEEEEE----------CCEEEEEEEECCc----ccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCC
Confidence 3557777776 3399999998631 234 667777889999999999999999999999999998543
No 136
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.54 E-value=1.2e+02 Score=39.51 Aligned_cols=132 Identities=11% Similarity=0.193 Sum_probs=85.4
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEccc-cCeEEEEeC--CeEEEEEcc
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALASL-QGHLLIASG--PKIILHKWT 1182 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~-~~~~g~V~al~~~-~g~Ll~~vg--~~l~v~~~~ 1182 (1432)
..++.|+++- -+|.|.+|++-= -.++++ .+.+|||..++=- .+-|.++-| -||.||.+.
T Consensus 19 P~rPwILtsl---------HsG~IQlWDYRM--------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 19 PKRPWILTSL---------HSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred CCCCEEEEee---------cCceeeeehhhh--------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 4578888775 489999998742 233444 3479999999833 345777777 589999998
Q ss_pred CCeee----------e-EEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcC
Q 000545 1183 GTELN----------G-IAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG 1251 (1432)
Q Consensus 1183 ~~~L~----------~-~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~ 1251 (1432)
.++.+ | +.|... -.+|.| +-=-+-|-+..|+ .++.+-+..- +...|+|+.|...+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhe-yPWIlS----------ASDDQTIrIWNwq--sr~~iavltG-HnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHE-YPWILS----------ASDDQTIRIWNWQ--SRKCIAVLTG-HNHYVMCAQFHPTE 147 (1202)
T ss_pred cceehhhhccccceeEEeeccCC-CceEEE----------ccCCCeEEEEecc--CCceEEEEec-CceEEEeeccCCcc
Confidence 76522 2 223333 223333 2222344555555 5566555554 34579999998777
Q ss_pred CeeEEEEEecCCcEEEEeeC
Q 000545 1252 STLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1252 ~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
+. ++.+--+..++|....
T Consensus 148 Dl--IVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 148 DL--IVSASLDQTVRVWDIS 165 (1202)
T ss_pred ce--EEEecccceEEEEeec
Confidence 76 7888889999998753
No 137
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=48.66 E-value=57 Score=37.21 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=92.7
Q ss_pred eEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEE---eecCceE
Q 000545 1083 TIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSK---ELKGAIS 1159 (1432)
Q Consensus 1083 ~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~---~~~g~V~ 1159 (1432)
++.|.+--++.|. .|. ....|++-|. ..|.|-||.+....- ++.||.-+.. ..+.+|.
T Consensus 207 ~IKFg~KSh~EcA---~FS-----PDgqyLvsgS---------vDGFiEVWny~~GKl--rKDLkYQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 207 SIKFGQKSHVECA---RFS-----PDGQYLVSGS---------VDGFIEVWNYTTGKL--RKDLKYQAQDNFMMMDDAVL 267 (508)
T ss_pred heecccccchhhe---eeC-----CCCceEeecc---------ccceeeeehhccchh--hhhhhhhhhcceeecccceE
Confidence 3556666666665 453 2458999887 589999999876321 1124443332 3579999
Q ss_pred EEccccC--eEEEE-eCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEecccCEEEEee
Q 000545 1160 ALASLQG--HLLIA-SGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLA 1234 (1432)
Q Consensus 1160 al~~~~g--~Ll~~-vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~--~n~IlvgD~~~Sv~ll~~~~~~~~l~~~a 1234 (1432)
||+=-++ +|..| +..||.||++...+.++.-. ....--|+++... +..|+-+-.-+-+-+-..+. ...|-++
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LKEf- 344 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLKEF- 344 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcchhhcccccceEEEecccc-chhHHHh-
Confidence 9985555 33332 34799999998765333211 1101224444433 23555444434443333321 1111111
Q ss_pred eccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1235 KDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1235 rD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
| -+...|..+.|--|++. +|.+-.+|.+.+..
T Consensus 345 r-GHsSyvn~a~ft~dG~~--iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 345 R-GHSSYVNEATFTDDGHH--IISASSDGTVKVWH 376 (508)
T ss_pred c-CccccccceEEcCCCCe--EEEecCCccEEEec
Confidence 1 13456788888667777 89999999999875
No 138
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=48.47 E-value=4.2e+02 Score=29.35 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=57.0
Q ss_pred eeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCC-CCCcc---E-EEEEEEeec
Q 000545 1081 RATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNAD-NPQNL---V-TEVYSKELK 1155 (1432)
Q Consensus 1081 ~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~-~~~~~---l-~~v~~~~~~ 1155 (1432)
+.-+|++-.|.++|+..|.+. + =|+||+ +.+|.+|++..... ..+.+ + +.+.....+
T Consensus 126 leiiElPl~~~p~ciaCC~~t----G----~LlVg~----------~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 126 LEIIELPLSEPPLCIACCPVT----G----NLLVGC----------GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred eEEEEecCCCCCCEEEecCCC----C----CEEEEc----------CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 556789999999999999874 2 277886 77888998865322 11111 1 222233455
Q ss_pred CceEEEccccCeEEEEeCCeEEEEEcc
Q 000545 1156 GAISALASLQGHLLIASGPKIILHKWT 1182 (1432)
Q Consensus 1156 g~V~al~~~~g~Ll~~vg~~l~v~~~~ 1182 (1432)
..+.-++-..||+.+.....++++++.
T Consensus 188 ~~p~~v~ic~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAICEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence 667777777788888888888888764
No 139
>PLN02153 epithiospecifier protein
Probab=47.53 E-value=5.5e+02 Score=30.47 Aligned_cols=84 Identities=7% Similarity=-0.011 Sum_probs=45.4
Q ss_pred eEEEEEccCCeeeeEEeec-C-CCeeEEEEEEeCCEEEE-Eec-----------cccEEEEEEecccCEEEEeeec---c
Q 000545 1175 KIILHKWTGTELNGIAFYD-A-PPLYVVSLNIVKNFILL-GDI-----------HKSIYFLSWKEQGAQLNLLAKD---F 1237 (1432)
Q Consensus 1175 ~l~v~~~~~~~L~~~a~~~-~-~~~~i~sl~~~~n~Ilv-gD~-----------~~Sv~ll~~~~~~~~l~~~arD---~ 1237 (1432)
.|.+|+...++........ . .+-.-.++.+.++.|+| |-. ...-.+..|+.+.++-..+..- +
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 4677887776655443221 0 01112234456665544 321 1112356678888887777542 4
Q ss_pred CCccEEEEEEEEcCCeeEEEEEe
Q 000545 1238 GSLDCFATEFLIDGSTLSLVVSD 1260 (1432)
Q Consensus 1238 ~~~~vta~~fl~d~~~l~~l~~D 1260 (1432)
.+|...++. .++ +.|+++++.
T Consensus 240 ~~r~~~~~~-~~~-~~iyv~GG~ 260 (341)
T PLN02153 240 SARSVFAHA-VVG-KYIIIFGGE 260 (341)
T ss_pred CCcceeeeE-EEC-CEEEEECcc
Confidence 456555554 344 688788774
No 140
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=47.29 E-value=64 Score=40.93 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=74.8
Q ss_pred EEEccccCeEEEEeC-CeEEEEEccCCeeee-EEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecc-cCEEEEeee
Q 000545 1159 SALASLQGHLLIASG-PKIILHKWTGTELNG-IAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQ-GAQLNLLAK 1235 (1432)
Q Consensus 1159 ~al~~~~g~Ll~~vg-~~l~v~~~~~~~L~~-~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~-~~~l~~~ar 1235 (1432)
+|+..-..+|..|+. ..||+|.=..++++. +.....-.+.+.+++....++++|...-=|.+++.+.. +..+..+..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 344444567776665 467888877666444 33333314455566667778888888777777766543 455555554
Q ss_pred cc--CCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCC
Q 000545 1236 DF--GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1236 D~--~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p 1272 (1432)
-. +++.|||+++--|+-+ +..+|..|-+..-+++-
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k--~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMK--LYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccE--EeecCCCceEEEEEech
Confidence 33 4899999997556656 78899999999877664
No 141
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=46.34 E-value=4.4e+02 Score=33.22 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=35.9
Q ss_pred EEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCC
Q 000545 1200 VSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQK 1263 (1432)
Q Consensus 1200 ~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~g 1263 (1432)
..+.+.+++|++||. ++. ++.|+.+..++.---+=..+...+-+.| ..++++++...|--+
T Consensus 400 ~~~~~~g~~v~~g~~-dG~-l~ald~~tG~~lW~~~~~~~~~a~P~~~-~~~g~~yv~~~~g~~ 460 (488)
T cd00216 400 GSLATAGNLVFAGAA-DGY-FRAFDATTGKELWKFRTPSGIQATPMTY-EVNGKQYVGVMVGGG 460 (488)
T ss_pred cceEecCCeEEEECC-CCe-EEEEECCCCceeeEEECCCCceEcCEEE-EeCCEEEEEEEecCC
Confidence 456677899999994 443 5567877776655443333444444443 345677555554433
No 142
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=44.96 E-value=94 Score=35.31 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=50.3
Q ss_pred CCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-
Q 000545 1086 MQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL- 1164 (1432)
Q Consensus 1086 l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~- 1164 (1432)
+..--.++||..++-.. ...+....+|||| ..|.||+++-. -+.++++..+.+++..|+..
T Consensus 173 l~~~t~ITcm~tikk~~-~d~~a~scLViGT---------E~~~i~iLd~~--------af~il~~~~lpsvPv~i~~~G 234 (257)
T PF14779_consen 173 LKRQTVITCMATIKKSS-ADEDAVSCLVIGT---------ESGEIYILDPQ--------AFTILKQVQLPSVPVFISVSG 234 (257)
T ss_pred cccCceeEEeeeecccc-cCCCCcceEEEEe---------cCCeEEEECch--------hheeEEEEecCCCceEEEEEe
Confidence 33444678888766432 2334679999999 58999987632 27888888888887777743
Q ss_pred -----cCeEEEEe-CCeEEE
Q 000545 1165 -----QGHLLIAS-GPKIIL 1178 (1432)
Q Consensus 1165 -----~g~Ll~~v-g~~l~v 1178 (1432)
+.+|+++. +++|++
T Consensus 235 ~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 235 QYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred eeeccceEEEEEeCCCEEEE
Confidence 23555444 566664
No 143
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=44.79 E-value=99 Score=40.48 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=75.3
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee-cCceEEEccccCeEEEEeCCeE----------
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL-KGAISALASLQGHLLIASGPKI---------- 1176 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~-~g~V~al~~~~g~Ll~~vg~~l---------- 1176 (1432)
+..++..|- .+|.+.+-+.. .++.+|+.+. .|.+..+. ++|.+|+++|-..
T Consensus 186 Nnr~lf~G~---------t~G~V~LrD~~--------s~~~iht~~aHs~siSDfD-v~GNlLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 186 NNRNLFCGD---------TRGTVFLRDPN--------SFETIHTFDAHSGSISDFD-VQGNLLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred cCcEEEeec---------ccceEEeecCC--------cCceeeeeeccccceeeee-ccCCeEEEeecccccccccccch
Confidence 346666665 47887765432 3777777664 67777765 6788888877543
Q ss_pred -EEEEccC-CeeeeEEeecC------CCeeEEEEEEeCCEEEEEeccccEEEEE---EecccCEEEEeeeccCCccEEEE
Q 000545 1177 -ILHKWTG-TELNGIAFYDA------PPLYVVSLNIVKNFILLGDIHKSIYFLS---WKEQGAQLNLLAKDFGSLDCFAT 1245 (1432)
Q Consensus 1177 -~v~~~~~-~~L~~~a~~~~------~~~~i~sl~~~~n~IlvgD~~~Sv~ll~---~~~~~~~l~~~arD~~~~~vta~ 1245 (1432)
.||++.. +.|.++.|... .|.+.+. ++|.-..-.+.++. +.. -..-..--++....+++.
T Consensus 248 vkVYDLRmmral~PI~~~~~P~flrf~Psl~t~-------~~V~S~sGq~q~vd~~~lsN--P~~~~~~v~p~~s~i~~f 318 (1118)
T KOG1275|consen 248 VKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTR-------LAVTSQSGQFQFVDTATLSN--PPAGVKMVNPNGSGISAF 318 (1118)
T ss_pred hhhhhhhhhhccCCcccccCchhhhhcccccce-------EEEEecccceeeccccccCC--CccceeEEccCCCcceeE
Confidence 4566653 44666665433 3444444 33433333333332 110 001111113333446777
Q ss_pred EEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1246 EFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1246 ~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
++--.++- +..+|..|+|.+++
T Consensus 319 DiSsn~~a--lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 319 DISSNGDA--LAFGDHEGHVNLWA 340 (1118)
T ss_pred EecCCCce--EEEecccCcEeeec
Confidence 75445555 78899999999987
No 144
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=44.73 E-value=3.2e+02 Score=32.85 Aligned_cols=126 Identities=11% Similarity=0.167 Sum_probs=65.4
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC-CeEEEEEccCCeee-eEEeecCCCeeEEEEEE
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG-PKIILHKWTGTELN-GIAFYDAPPLYVVSLNI 1204 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg-~~l~v~~~~~~~L~-~~a~~~~~~~~i~sl~~ 1204 (1432)
.|.++.|+... ++ ++...+..+ ..+....+|+|+++.. ..|+.++....+++ +..-... ....+...
T Consensus 250 ~g~l~a~d~~t----G~----~~W~~~~~~-~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i 318 (377)
T TIGR03300 250 QGRVAALDLRS----GR----VLWKRDASS-YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPAV 318 (377)
T ss_pred CCEEEEEECCC----Cc----EEEeeccCC-ccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCEE
Confidence 57788887642 11 222223222 2222334678777664 57888888655433 1111111 12223344
Q ss_pred eCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1205 VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1205 ~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
.+++|++++.-..+.++ +...+++.---+ ...-.+.+.- .+-++. ++++..+|+|+.|+
T Consensus 319 ~g~~l~~~~~~G~l~~~--d~~tG~~~~~~~-~~~~~~~~sp-~~~~~~--l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWL--SREDGSFVARLK-TDGSGIASPP-VVVGDG--LLVQTRDGDLYAFR 377 (377)
T ss_pred ECCEEEEEeCCCEEEEE--ECCCCCEEEEEE-cCCCccccCC-EEECCE--EEEEeCCceEEEeC
Confidence 68999999977666655 555555432111 1111123232 233456 45677899998875
No 145
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=44.41 E-value=3e+02 Score=31.19 Aligned_cols=100 Identities=9% Similarity=0.157 Sum_probs=63.0
Q ss_pred CeEEEE-eCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEE
Q 000545 1166 GHLLIA-SGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFA 1244 (1432)
Q Consensus 1166 g~Ll~~-vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta 1244 (1432)
+.++++ .|.+|++|++...+-...-.... ......-...++++++|+--+=|+++--+ +...+..-..+..+-.
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r----~~~~~~~~~~~~e~ne 152 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIETKG-ENINITWSPDGEYIAVGNKDDRITFIDAR----TYKIVNEEQFKFEVNE 152 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeeccC-cceEEEEcCCCCEEEEecCcccEEEEEec----ccceeehhcccceeee
Confidence 455544 45789999998665333223333 33444556789999999988888887322 2223334444555666
Q ss_pred EEEEEcCCeeEEEEEecCCcEEEEeeCC
Q 000545 1245 TEFLIDGSTLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1245 ~~fl~d~~~l~~l~~D~~gNl~vl~~~p 1272 (1432)
+.+- ..+.| |+..--.|-+-+|.|+.
T Consensus 153 ~~w~-~~nd~-Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 153 ISWN-NSNDL-FFLTNGLGCVEILSYPS 178 (313)
T ss_pred eeec-CCCCE-EEEecCCceEEEEeccc
Confidence 6654 34455 56677889999999973
No 146
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=44.04 E-value=33 Score=25.68 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhc
Q 000545 1403 EQLEIAHQTGTTRSQILSNLNDLALG 1428 (1432)
Q Consensus 1403 ~q~~ia~~l~~~~~~i~~~l~~l~~~ 1428 (1432)
.+++||+.+|.+++.+.+.|..+++.
T Consensus 4 tr~diA~~lG~t~ETVSR~l~~l~~~ 29 (32)
T PF00325_consen 4 TRQDIADYLGLTRETVSRILKKLERQ 29 (32)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHc
Confidence 37899999999999999998888753
No 147
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.39 E-value=8.1e+02 Score=31.24 Aligned_cols=134 Identities=13% Similarity=0.202 Sum_probs=79.2
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEee-cCceEEEccc--cCeEEEEeC-CeEEEEEccCCeeeeEEeecCCCeeEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKEL-KGAISALASL--QGHLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVS 1201 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~-~g~V~al~~~--~g~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~s 1201 (1432)
..|++.+|..... .++-+.++ +-||.+..=+ ++.+++|.. -.|+||.++.- .++-.+...+-||-+
T Consensus 33 ynG~V~IWnyetq--------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV~~FeAH~DyIR~ 102 (794)
T KOG0276|consen 33 YNGDVQIWNYETQ--------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKVKTFEAHSDYIRS 102 (794)
T ss_pred ecCeeEEEecccc--------eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc--eeeEEeeccccceee
Confidence 4899999988642 23334444 4566663322 456888876 58899988653 333333333788999
Q ss_pred EEEeCC--EEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcC-CeeEEEEEecCCcEEEEeeCCC
Q 000545 1202 LNIVKN--FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG-STLSLVVSDEQKNIQIFYYAPK 1273 (1432)
Q Consensus 1202 l~~~~n--~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~-~~l~~l~~D~~gNl~vl~~~p~ 1273 (1432)
|.+... +++-+-=-.-|-+..|+ ..=-..--=.-+.+.|+++.|-..+ ++ |+.+--++.+-|.++-..
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we--~~wa~~qtfeGH~HyVMqv~fnPkD~nt--FaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWE--NEWACEQTFEGHEHYVMQVAFNPKDPNT--FASASLDRTVKVWSLGSP 173 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeecc--CceeeeeEEcCcceEEEEEEecCCCccc--eeeeeccccEEEEEcCCC
Confidence 888764 55544211123333333 2211111223466789999886644 45 788888888888886433
No 148
>PRK01742 tolB translocation protein TolB; Provisional
Probab=43.32 E-value=1.7e+02 Score=36.16 Aligned_cols=95 Identities=11% Similarity=0.149 Sum_probs=54.8
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilvg-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
..|++|++...+......... ..........+++|+++ +--..+.++.++...+.+..+... ...+++..|-.|+.
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~--~~~~~~~~wSpDG~ 304 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG--AGNNTEPSWSPDGQ 304 (429)
T ss_pred cEEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC--CCCcCCEEECCCCC
Confidence 358888886544333333332 12222344456677664 444445666677655665555432 22456677767777
Q ss_pred eeEEEEEecCCcEEEEeeCC
Q 000545 1253 TLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1253 ~l~~l~~D~~gNl~vl~~~p 1272 (1432)
.| ++++|+.|+..++.++.
T Consensus 305 ~i-~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 305 SI-LFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EE-EEEECCCCCceEEEEEC
Confidence 76 55688888877777643
No 149
>PLN02153 epithiospecifier protein
Probab=42.13 E-value=6.6e+02 Score=29.81 Aligned_cols=90 Identities=9% Similarity=-0.013 Sum_probs=50.6
Q ss_pred CeEEEEEccCCeeeeEEeec-C-CCeeEEEEEEeCCEEE-EEecc------------ccEEEEEEecccCEEEEeeec--
Q 000545 1174 PKIILHKWTGTELNGIAFYD-A-PPLYVVSLNIVKNFIL-LGDIH------------KSIYFLSWKEQGAQLNLLAKD-- 1236 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~-~-~~~~i~sl~~~~n~Il-vgD~~------------~Sv~ll~~~~~~~~l~~~arD-- 1236 (1432)
+.+.+|+....+...+.... . .+-...+..+.+++|+ +|-.. .+-.++.|+.+.++-..+...
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~ 296 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGE 296 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCC
Confidence 46888888887777665431 1 0233455566676444 55421 122577888888887777643
Q ss_pred -cCCc-cE-EEEEEEEcCCeeEEEEEecCC
Q 000545 1237 -FGSL-DC-FATEFLIDGSTLSLVVSDEQK 1263 (1432)
Q Consensus 1237 -~~~~-~v-ta~~fl~d~~~l~~l~~D~~g 1263 (1432)
..|| |. .++.....++.+.+.++...+
T Consensus 297 ~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 297 PAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred CCCCCccccccccccCCcceEEEEcCcCCC
Confidence 2333 32 233322344577677777554
No 150
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.02 E-value=59 Score=43.25 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=67.6
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEcc-ccCeEEEE-eC-CeEEEEEccCC
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALAS-LQGHLLIA-SG-PKIILHKWTGT 1184 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~-~~~~g~V~al~~-~~g~Ll~~-vg-~~l~v~~~~~~ 1184 (1432)
...||+|| +.|.++.++..-+ |+.+|. +.+.|||++++- -+|+++++ -+ .-|.+|+...+
T Consensus 99 ~~~ivi~T---------s~ghvl~~d~~~n-------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 99 VVPIVIGT---------SHGHVLLSDMTGN-------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeEEEEc---------Cchhhhhhhhhcc-------cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 46899999 5899999888642 554444 557999999993 35665544 43 34889999986
Q ss_pred eeee-EEeecCCCe-eEEEEEEeCC-EEEEEeccccEEEEEEec
Q 000545 1185 ELNG-IAFYDAPPL-YVVSLNIVKN-FILLGDIHKSIYFLSWKE 1225 (1432)
Q Consensus 1185 ~L~~-~a~~~~~~~-~i~sl~~~~n-~IlvgD~~~Sv~ll~~~~ 1225 (1432)
++.+ .-+...-.. .++.+.+-+| .++.+|...|+|=+.|..
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVFNK 206 (1206)
T ss_pred cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEEech
Confidence 6544 333333122 2333444444 699999999999888864
No 151
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=41.51 E-value=4.7e+02 Score=33.90 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=69.4
Q ss_pred eEEEeeecCCcEEEEEecCcEEEEcCC--cceEEEeCCCCC-CCCCCCCCCccE--EEEEEeCCEEEEEEeCCcEEEEEe
Q 000545 611 TIAAGNLFGRRRVIQVFERGARILDGS--YMTQDLSFGPSN-SESGSGSENSTV--LSVSIADPYVLLGMSDGSIRLLVG 685 (1432)
Q Consensus 611 Tl~ag~l~~~~~ivQVt~~~irli~~~--~~~~~~~~~~~~-~~~~~~~~~~~I--~~asi~d~~vll~~~~g~i~~l~~ 685 (1432)
-|+||-+ ++-.-|+++|++--+..+. .-++-|...... ...-.+ ...+| +.-|.|+.|++..-.+|.|.++.+
T Consensus 529 Rifaghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 529 RIFAGHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhcccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 5677777 5556778888877766653 244555442211 000001 11233 444558889988888999998875
Q ss_pred cCCCceEEeecCccccCCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeEEE
Q 000545 686 DPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEI 765 (1432)
Q Consensus 686 ~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I 765 (1432)
-......... + ..+.|-++++..|. ..+|++..|.+|++
T Consensus 607 ~~~~~v~~l~-----~-Ht~ti~SlsFS~dg-----------------------------------~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 607 ANGSLVKQLK-----G-HTGTIYSLSFSRDG-----------------------------------NVLASGGADNSVRL 645 (707)
T ss_pred CCCcchhhhh-----c-ccCceeEEEEecCC-----------------------------------CEEEecCCCCeEEE
Confidence 4322111111 1 25567777774442 28899999999999
Q ss_pred EECCC
Q 000545 766 FDVPN 770 (1432)
Q Consensus 766 ~sLp~ 770 (1432)
|.+..
T Consensus 646 WD~~~ 650 (707)
T KOG0263|consen 646 WDLTK 650 (707)
T ss_pred EEchh
Confidence 97654
No 152
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=41.10 E-value=8.8e+02 Score=31.00 Aligned_cols=134 Identities=9% Similarity=0.088 Sum_probs=84.6
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEccccCeEEEE-eCCeEEEEEccCCee
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALASLQGHLLIA-SGPKIILHKWTGTEL 1186 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~-~~g~V~al~~~~g~Ll~~-vg~~l~v~~~~~~~L 1186 (1432)
..+++-|. ....+.+|++... .- +|... ..+.|.+|+..+.+++-| --++|++|++...+.
T Consensus 261 ~~~lvsgS---------~D~t~rvWd~~sg------~C--~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~ 323 (537)
T KOG0274|consen 261 GDKLVSGS---------TDKTERVWDCSTG------EC--THSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC 323 (537)
T ss_pred CCEEEEEe---------cCCcEEeEecCCC------cE--EEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcce
Confidence 46777776 3667888886542 11 22222 567888888766666654 447899999997664
Q ss_pred eeEEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEE-EEeeeccCCccEEEEEEEEcC-CeeEEEEEecCC
Q 000545 1187 NGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQL-NLLAKDFGSLDCFATEFLIDG-STLSLVVSDEQK 1263 (1432)
Q Consensus 1187 ~~~a~-~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l-~~~arD~~~~~vta~~fl~d~-~~l~~l~~D~~g 1263 (1432)
+..-. ... .|.++...+++++.|-.-.+|-+. +....++ ..+.. +..+|++.. ++. +. ++.+-.++
T Consensus 324 l~l~~~h~~---~V~~v~~~~~~lvsgs~d~~v~VW--~~~~~~cl~sl~g--H~~~V~sl~--~~~~~~--~~Sgs~D~ 392 (537)
T KOG0274|consen 324 LNLLRGHTG---PVNCVQLDEPLLVSGSYDGTVKVW--DPRTGKCLKSLSG--HTGRVYSLI--VDSENR--LLSGSLDT 392 (537)
T ss_pred EEEeccccc---cEEEEEecCCEEEEEecCceEEEE--EhhhceeeeeecC--CcceEEEEE--ecCcce--EEeeeecc
Confidence 44322 434 455555569999999877766655 4443332 23332 778899985 455 55 56666668
Q ss_pred cEEEEee
Q 000545 1264 NIQIFYY 1270 (1432)
Q Consensus 1264 Nl~vl~~ 1270 (1432)
-|.+..+
T Consensus 393 ~IkvWdl 399 (537)
T KOG0274|consen 393 TIKVWDL 399 (537)
T ss_pred ceEeecC
Confidence 7887764
No 153
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.90 E-value=6.5e+02 Score=29.42 Aligned_cols=151 Identities=18% Similarity=0.226 Sum_probs=83.4
Q ss_pred EEEEecCeEEEEEcCCCCccCCCcceEEEeeCCCcccEEE-EeCCCCeEEEEEeecccccccccccccccccccccccCC
Q 000545 970 IYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQIT-YFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNH 1048 (1432)
Q Consensus 970 i~~~~~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~-y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~ 1048 (1432)
|++.-++.+.+.+.++..+ .++. +.....|+.++ +.+....-++++-
T Consensus 107 iVvvl~~~I~VytF~~n~k-----~l~~-~et~~NPkGlC~~~~~~~k~~LafP-------------------------- 154 (346)
T KOG2111|consen 107 IVVVLENKIYVYTFPDNPK-----LLHV-IETRSNPKGLCSLCPTSNKSLLAFP-------------------------- 154 (346)
T ss_pred EEEEecCeEEEEEcCCChh-----heee-eecccCCCceEeecCCCCceEEEcC--------------------------
Confidence 3444477899999886554 3444 66666787766 4444433333321
Q ss_pred CCCccccccccccceEEEEEeccCCCCCCceee-eeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccc
Q 000545 1049 NLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTR-ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR 1127 (1432)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~-~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~ 1127 (1432)
-...+.||+++.. |... ......+++...++....+. ...++ |+- ++
T Consensus 155 -----------g~k~GqvQi~dL~-----~~~~~~p~~I~AH~s~Iacv~Ln~~-------Gt~vA--TaS-------tk 202 (346)
T KOG2111|consen 155 -----------GFKTGQVQIVDLA-----STKPNAPSIINAHDSDIACVALNLQ-------GTLVA--TAS-------TK 202 (346)
T ss_pred -----------CCccceEEEEEhh-----hcCcCCceEEEcccCceeEEEEcCC-------ccEEE--Eec-------cC
Confidence 0123578888753 2322 23444555554444333321 23333 332 35
Q ss_pred eeE-EEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccC-eEEEEeC-CeEEEEEccCCeeeeE
Q 000545 1128 GRV-LLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQG-HLLIASG-PKIILHKWTGTELNGI 1189 (1432)
Q Consensus 1128 Gri-~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~-~~g-~Ll~~vg-~~l~v~~~~~~~L~~~ 1189 (1432)
|-| .+|+-... .+++.+.+--.+..+|+|+= -+. +|.++.. ++|+||.+.+..+.+.
T Consensus 203 GTLIRIFdt~~g-----~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 203 GTLIRIFDTEDG-----TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred cEEEEEEEcCCC-----cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 553 45665431 35776666666778888872 234 5555554 6899999987655444
No 154
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=40.79 E-value=2.4e+02 Score=28.81 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=45.5
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--c-----cCeEEEEeCCeEEEE
Q 000545 1107 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--L-----QGHLLIASGPKIILH 1179 (1432)
Q Consensus 1107 ~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~--~-----~g~Ll~~vg~~l~v~ 1179 (1432)
+..+.|+..| ..|+|+++.-..........=..+..-.++-.|+||+. + .+-|++|.-+.|..|
T Consensus 8 G~~pcL~~aT---------~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 8 GVHPCLACAT---------TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CCceeEEEEe---------cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Confidence 3567888888 47888888765422111101112333457888888863 4 356999999999999
Q ss_pred EccCC
Q 000545 1180 KWTGT 1184 (1432)
Q Consensus 1180 ~~~~~ 1184 (1432)
+..++
T Consensus 79 DV~~N 83 (136)
T PF14781_consen 79 DVENN 83 (136)
T ss_pred EcccC
Confidence 99865
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=40.78 E-value=5.4e+02 Score=30.30 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=19.2
Q ss_pred EEEEEecCCeEEEEECCCCceeEE
Q 000545 753 YSVVCYESGALEIFDVPNFNCVFT 776 (1432)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~~ 776 (1432)
.++++.++|+++||+....+.+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~ 65 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE 65 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe
Confidence 688899999999999877555443
No 156
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=40.03 E-value=4.9e+02 Score=31.64 Aligned_cols=99 Identities=7% Similarity=0.119 Sum_probs=53.7
Q ss_pred ccCeEEEEe-CCeEEEEEccCCeee-eEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCcc
Q 000545 1164 LQGHLLIAS-GPKIILHKWTGTELN-GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLD 1241 (1432)
Q Consensus 1164 ~~g~Ll~~v-g~~l~v~~~~~~~L~-~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~ 1241 (1432)
.+|+|+++. ..+|+.++....+.+ +...... ....+..+.+++|+++|.-.-+.. ++...+++.---+ .....
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~sp~v~~g~l~v~~~~G~l~~--ld~~tG~~~~~~~-~~~~~ 367 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--RLLTAPVLYNGYLVVGDSEGYLHW--INREDGRFVAQQK-VDSSG 367 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCC--CcccCCEEECCEEEEEeCCCEEEE--EECCCCCEEEEEE-cCCCc
Confidence 456666554 457777777544321 1111111 112233456899999987665554 4666665433221 11122
Q ss_pred EEEEEEEEcCCeeEEEEEecCCcEEEEee
Q 000545 1242 CFATEFLIDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1242 vta~~fl~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
+.+.- ++.++. +++++.+|.|+.++.
T Consensus 368 ~~s~P-~~~~~~--l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 FLSEP-VVADDK--LLIQARDGTVYAITR 393 (394)
T ss_pred ceeCC-EEECCE--EEEEeCCceEEEEeC
Confidence 33322 244567 677899999999874
No 157
>PTZ00421 coronin; Provisional
Probab=39.09 E-value=9e+02 Score=30.55 Aligned_cols=145 Identities=20% Similarity=0.168 Sum_probs=70.8
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccCeEEEEeC--CeEEEEEccCCe
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQGHLLIASG--PKIILHKWTGTE 1185 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~-~~g~Ll~~vg--~~l~v~~~~~~~ 1185 (1432)
..+|+.|. ..|.|.+|++... ..+..+ ....+.|++|+- -+|.++++.+ ++|++|++...+
T Consensus 138 ~~iLaSgs---------~DgtVrIWDl~tg-----~~~~~l--~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAG---------ADMVVNVWDVERG-----KAVEVI--KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEe---------CCCEEEEEECCCC-----eEEEEE--cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 35677665 3688999998642 112211 224577888873 3566655543 689999998665
Q ss_pred eeeEEeecCCCeeEEEEEE--eCCEEE-EEec---cccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEE
Q 000545 1186 LNGIAFYDAPPLYVVSLNI--VKNFIL-LGDI---HKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVS 1259 (1432)
Q Consensus 1186 L~~~a~~~~~~~~i~sl~~--~~n~Il-vgD~---~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~ 1259 (1432)
.+....... ...+..+.. .+++|+ +|.- .+.|.+...+.....+....-|.. ..+....|-.|.+.| ++++
T Consensus 202 ~v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~-~~~~~~~~d~d~~~L-~lgg 278 (493)
T PTZ00421 202 IVSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS-SALFIPFFDEDTNLL-YIGS 278 (493)
T ss_pred EEEEEecCC-CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC-CceEEEEEcCCCCEE-EEEE
Confidence 433221111 111111111 234444 4421 244555433221222222221221 122223332244443 5555
Q ss_pred ecCCcEEEEeeCC
Q 000545 1260 DEQKNIQIFYYAP 1272 (1432)
Q Consensus 1260 D~~gNl~vl~~~p 1272 (1432)
-.+|+|.++++..
T Consensus 279 kgDg~Iriwdl~~ 291 (493)
T PTZ00421 279 KGEGNIRCFELMN 291 (493)
T ss_pred eCCCeEEEEEeeC
Confidence 5699999998753
No 158
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=38.98 E-value=2.5e+02 Score=34.54 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=61.8
Q ss_pred eEEEEeCCeEEEEEccCCe--ee---eEEeecC-CCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCc
Q 000545 1167 HLLIASGPKIILHKWTGTE--LN---GIAFYDA-PPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSL 1240 (1432)
Q Consensus 1167 ~Ll~~vg~~l~v~~~~~~~--L~---~~a~~~~-~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~ 1240 (1432)
+|-++-..+++||++.+.+ +. .+..--. ++.....-.-.+++|..|-.--||.+..+....-+-...-||.+.-
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP 363 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC
Confidence 3445556899999998532 22 1222111 1333333344678999999999999987744333444455665544
Q ss_pred --cEEEEEEEEcCCeeEEEEEecCCcEEEEee
Q 000545 1241 --DCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1241 --~vta~~fl~d~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
.++|+.|--|++.| +.--.++.|-+..+
T Consensus 364 g~~Itsi~FS~dg~~L--lSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYL--LSRGFDDTLKVWDL 393 (641)
T ss_pred CCceeEEEeccccchh--hhccCCCceeeeec
Confidence 89999997787763 43333555555543
No 159
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=38.63 E-value=6.1e+02 Score=29.79 Aligned_cols=102 Identities=15% Similarity=0.095 Sum_probs=54.3
Q ss_pred EEccccCeEEEEeC-------CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-Eec--cccEEEEEEecccCE
Q 000545 1160 ALASLQGHLLIASG-------PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDI--HKSIYFLSWKEQGAQ 1229 (1432)
Q Consensus 1160 al~~~~g~Ll~~vg-------~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~--~~Sv~ll~~~~~~~~ 1229 (1432)
+.+.++|+|.+.-| +.+..|+...++....+-+...+-.-..+.+.++.|+| |=. .....+..|+++.++
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 34456777666544 35778888777666554221101112233445665554 421 112235688988888
Q ss_pred EEEeeec---cCCccEE-EEEEEEcCCeeEEEEEec
Q 000545 1230 LNLLAKD---FGSLDCF-ATEFLIDGSTLSLVVSDE 1261 (1432)
Q Consensus 1230 l~~~arD---~~~~~vt-a~~fl~d~~~l~~l~~D~ 1261 (1432)
-..++.. ..|+... ++.+.+.++.|+++++..
T Consensus 198 W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 198 WQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred eEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 8777653 2343321 222235667887777654
No 160
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=38.42 E-value=50 Score=23.74 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=14.0
Q ss_pred EEEEEecCCeEEEEE
Q 000545 753 YSVVCYESGALEIFD 767 (1432)
Q Consensus 753 ~l~v~~~~g~l~I~s 767 (1432)
|++++++.+-|+||+
T Consensus 13 ~vavaTS~~~lRifs 27 (27)
T PF12341_consen 13 WVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEeCCCeEEecC
Confidence 999999999999985
No 161
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=38.38 E-value=67 Score=39.42 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=61.1
Q ss_pred CceEEEccc-cCeEEEEeCC--eEEEEEccCCeeeeEEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEE
Q 000545 1156 GAISALASL-QGHLLIASGP--KIILHKWTGTELNGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLN 1231 (1432)
Q Consensus 1156 g~V~al~~~-~g~Ll~~vg~--~l~v~~~~~~~L~~~a~-~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~ 1231 (1432)
|+|...+-. +|+.||+|++ .|+||+++..+|+.+.- |-. ....++-+..+.+|++|---+=|++..|- +.+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~--erR-- 365 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFE--ERR-- 365 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEec--cce--
Confidence 444444422 6788888875 79999999888876432 333 45666777789999999666667776653 444
Q ss_pred Eeeec-cCCccEEEEEE
Q 000545 1232 LLAKD-FGSLDCFATEF 1247 (1432)
Q Consensus 1232 ~~arD-~~~~~vta~~f 1247 (1432)
++||- -++-||..+.|
T Consensus 366 VVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 366 VVARGQGHKSWVSVVAF 382 (636)
T ss_pred EEEeccccccceeeEee
Confidence 56775 46779999998
No 162
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=37.36 E-value=8.7e+02 Score=29.88 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=50.4
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEE-eecCceEEEccc-cCeEEEE--eCCeEEEEEccCCeeeeEEeecCCCeeEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALASL-QGHLLIA--SGPKIILHKWTGTELNGIAFYDAPPLYVVS 1201 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~-~~~g~V~al~~~-~g~Ll~~--vg~~l~v~~~~~~~L~~~a~~~~~~~~i~s 1201 (1432)
..+-+.+|++.. ...+|.. ....|||+++-- +|+.+|. .+..|++|.....+|.+.---+. .++=++
T Consensus 430 ~dstV~lwdv~~--------gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~ 500 (524)
T KOG0273|consen 430 FDSTVKLWDVES--------GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELC 500 (524)
T ss_pred cCCeEEEEEccC--------CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC-eEEEEE
Confidence 467888999864 3445554 678999999844 4655544 24678888887766655433233 222222
Q ss_pred EEEeCCEEEEEeccccEEEEE
Q 000545 1202 LNIVKNFILLGDIHKSIYFLS 1222 (1432)
Q Consensus 1202 l~~~~n~IlvgD~~~Sv~ll~ 1222 (1432)
-...||+|.+.=.-.++.++.
T Consensus 501 Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 501 WNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EcCCCCEEEEEecCCCceEEE
Confidence 233444444444444444443
No 163
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=36.91 E-value=5e+02 Score=31.13 Aligned_cols=159 Identities=15% Similarity=0.203 Sum_probs=90.0
Q ss_pred ecCceEEE--ccccCeEEEEeC--CeEEEEEccCCeee-----eEEeecCCCeeEEE-----------EE--EeCCEEEE
Q 000545 1154 LKGAISAL--ASLQGHLLIASG--PKIILHKWTGTELN-----GIAFYDAPPLYVVS-----------LN--IVKNFILL 1211 (1432)
Q Consensus 1154 ~~g~V~al--~~~~g~Ll~~vg--~~l~v~~~~~~~L~-----~~a~~~~~~~~i~s-----------l~--~~~n~Ilv 1211 (1432)
.+|+|.-+ |+||+..+|+-+ .+|+||++-+.-|. ++.++.. +.-=+. |. ..+|.|.+
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEE
Confidence 45677655 578999887765 68999999754322 1222222 111111 11 12566666
Q ss_pred EeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEec
Q 000545 1212 GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHV 1291 (1432)
Q Consensus 1212 gD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~l 1291 (1432)
.++-.+..++.. . +|--|+++.|--|++. ++.+-++.-|+|+. |.. .+++..+.-|-
T Consensus 159 Wnv~tgeali~l----------~---hpd~i~S~sfn~dGs~--l~TtckDKkvRv~d--pr~------~~~v~e~~~he 215 (472)
T KOG0303|consen 159 WNVGTGEALITL----------D---HPDMVYSMSFNRDGSL--LCTTCKDKKVRVID--PRR------GTVVSEGVAHE 215 (472)
T ss_pred EeccCCceeeec----------C---CCCeEEEEEeccCCce--eeeecccceeEEEc--CCC------CcEeeeccccc
Confidence 666666555532 1 6677889998777776 78888899999874 321 23444444454
Q ss_pred CcceeE-------------EEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEEeCChH
Q 000545 1292 GAHVTK-------------FLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDEL 1343 (1432)
Q Consensus 1292 g~~vt~-------------~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~pl~e~ 1343 (1432)
|....+ |-|.+-+.. ..-+.+. ....+.+-++++|=|++.|+-+.
T Consensus 216 G~k~~Raifl~~g~i~tTGfsr~seRq~------aLwdp~n-l~eP~~~~elDtSnGvl~PFyD~ 273 (472)
T KOG0303|consen 216 GAKPARAIFLASGKIFTTGFSRMSERQI------ALWDPNN-LEEPIALQELDTSNGVLLPFYDP 273 (472)
T ss_pred CCCcceeEEeccCceeeeccccccccce------eccCccc-ccCcceeEEeccCCceEEeeecC
Confidence 444433 222211100 0000011 12348888999999999999543
No 164
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=36.69 E-value=7.1e+02 Score=28.60 Aligned_cols=98 Identities=13% Similarity=0.160 Sum_probs=67.1
Q ss_pred cCeEEEEeC----CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeec--cC
Q 000545 1165 QGHLLIASG----PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKD--FG 1238 (1432)
Q Consensus 1165 ~g~Ll~~vg----~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD--~~ 1238 (1432)
+|.|+-+.| +.|+.|++...+.+....++. ..+--.|...+|.|+.=.=...+.|. |+... |..+.+= ..
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~-yd~~t--l~~~~~~~y~~ 130 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFV-YDPNT--LKKIGTFPYPG 130 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESSSSEEEE-EETTT--TEEEEEEE-SS
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEecCCeEEE-Ecccc--ceEEEEEecCC
Confidence 478888887 478889998888877778887 78899999999999998888888754 67653 3333221 23
Q ss_pred CccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCC
Q 000545 1239 SLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKM 1274 (1432)
Q Consensus 1239 ~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~ 1274 (1432)
--|-.| -|++. ++.+|-...|+.+. |.+
T Consensus 131 EGWGLt----~dg~~--Li~SDGS~~L~~~d--P~~ 158 (264)
T PF05096_consen 131 EGWGLT----SDGKR--LIMSDGSSRLYFLD--PET 158 (264)
T ss_dssp S--EEE----ECSSC--EEEE-SSSEEEEE---TTT
T ss_pred cceEEE----cCCCE--EEEECCccceEEEC--Ccc
Confidence 446555 36667 78999999998874 553
No 165
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.68 E-value=3.3e+02 Score=30.85 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=45.4
Q ss_pred eeEeeceeEEEeeCceEEEEeCCCCEEEEEEEEcCeeeeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEE
Q 000545 361 SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQF 437 (1432)
Q Consensus 361 ~~~ld~~~~~~~~~~~~Ll~~~~G~l~~l~l~~dg~~V~~l~i~~~~~~~~~s~l~~l~~g~lF~gS~~GDS~L~~~ 437 (1432)
..+++++.. . -.+|+.++-.+|.||.|.+.. |.......+ .+++ -.+..+-.+.|+++.||+-|+-+-+-.
T Consensus 52 g~RiE~sa~-v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~--~~~v-k~~a~~d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 52 GVRIECSAI-V-VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI--LETV-KVRAQCDFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred CceeeeeeE-E-ECCEEEEEEccCcEEEEEecc-hhheeeeee--hhhh-ccceEEcCCCceEEEecCCCcEEEecc
Confidence 346666532 2 456799999999999998864 432222211 2222 245566678999999999988544443
No 166
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=34.62 E-value=1.1e+02 Score=39.99 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=49.9
Q ss_pred CCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcC--Ce--eEEEEEecCCcEEEEee
Q 000545 1206 KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG--ST--LSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1206 ~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~--~~--l~~l~~D~~gNl~vl~~ 1270 (1432)
-.+|+||+=..+|+++.|...+.+............|=++.|+-++ .. ..++++|-.||+++++.
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4689999999999999998765665554444466788899986443 11 34789999999999886
No 167
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=34.61 E-value=5.8e+02 Score=31.42 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=62.1
Q ss_pred eCCeEEEEEccCCeeeeEEee-cCCCeeEEEEEEe----CCEEEEEeccccEEEEEEecccC-----EEEEeeeccC---
Q 000545 1172 SGPKIILHKWTGTELNGIAFY-DAPPLYVVSLNIV----KNFILLGDIHKSIYFLSWKEQGA-----QLNLLAKDFG--- 1238 (1432)
Q Consensus 1172 vg~~l~v~~~~~~~L~~~a~~-~~~~~~i~sl~~~----~n~IlvgD~~~Sv~ll~~~~~~~-----~l~~~arD~~--- 1238 (1432)
-|++|++|+|...+++..--+ +. ......|... .+.=+||-+..|=.+.-|+.+.+ +.+.+..-..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~-g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEE-GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TT-EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCCCcEeeEEecCCC-CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 489999999998876554322 22 2345555543 46888999988776666764433 3333321111
Q ss_pred ------------CccEEEEEEEEcCCeeEEEEEecCCcEEEEee-CCCCCCCccCceEEEEEEEecCcceeEE
Q 000545 1239 ------------SLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY-APKMSESWKGQKLLSRAEFHVGAHVTKF 1298 (1432)
Q Consensus 1239 ------------~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~-~p~~~~s~~~~kL~~~~~f~lg~~vt~~ 1298 (1432)
|--+|.+..-+|+..| ++..=-.|.++-|.. +|.+| ...++.++|..+.+-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfL-Yvs~W~~GdvrqYDISDP~~P--------kl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFL-YVSNWLHGDVRQYDISDPFNP--------KLVGQVFLGGSIRKG 362 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EE-EEEETTTTEEEEEE-SSTTS---------EEEEEEE-BTTTT-B
T ss_pred cccccccccccCCCceEeEEEccCCCEE-EEEcccCCcEEEEecCCCCCC--------cEEeEEEECcEeccC
Confidence 1224665544577777 566777999988875 44444 478899999988654
No 168
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=34.48 E-value=3.7e+02 Score=31.71 Aligned_cols=137 Identities=18% Similarity=0.216 Sum_probs=84.3
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-CeEEEEeC-CeEEEEEccCCeeeeEEeecCCCeeEEEEEE
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-GHLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLNI 1204 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~-g~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~ 1204 (1432)
.+.|.+|++... -..+.-+..+-.|.|+|--- -+++|+.+ ..+.-|++-++.++.- +-.. ...|.+|.+
T Consensus 298 D~tvrlWDl~ag-------kt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh-~~iintl~~ 368 (460)
T KOG0285|consen 298 DSTVRLWDLRAG-------KTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGH-NAIINTLSV 368 (460)
T ss_pred CceEEEeeeccC-------ceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-cccc-cceeeeeee
Confidence 577888888653 12233345677888888543 34555554 5677788877665443 2122 346667776
Q ss_pred e-CCEEEEEeccccEEEEEEecccC-EEEEeeecc----CCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCC
Q 000545 1205 V-KNFILLGDIHKSIYFLSWKEQGA-QLNLLAKDF----GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKM 1274 (1432)
Q Consensus 1205 ~-~n~IlvgD~~~Sv~ll~~~~~~~-~l~~~arD~----~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~ 1274 (1432)
. ++..++|-=--+++|..|+.-.+ +...-.--+ .-.-++|++| |...+-+|.+..+.||-+++-+.+.
T Consensus 369 nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f--Dktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 369 NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF--DKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEee--cccCceEEeccCCcceEEEeccccc
Confidence 5 46777887777888888764321 221111111 2235688887 5554458999999999999876543
No 169
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=34.31 E-value=6.5e+02 Score=27.52 Aligned_cols=98 Identities=8% Similarity=0.072 Sum_probs=57.6
Q ss_pred ccCeEEEE-eCCeEEEEEccCCeee-eEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEe-eecc---
Q 000545 1164 LQGHLLIA-SGPKIILHKWTGTELN-GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLL-AKDF--- 1237 (1432)
Q Consensus 1164 ~~g~Ll~~-vg~~l~v~~~~~~~L~-~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~-arD~--- 1237 (1432)
-+|+++++ ....|+.|+....+++ +... .. +.... ....++.|+|+..-. .+..++...+++.-- ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~-~~~~~~~v~v~~~~~--~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA-PVVDGGRVYVGTSDG--SLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG-EEEETTEEEEEETTS--EEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce-eeeccccccccccee--eeEecccCCcceeeeeccccccc
Confidence 57888887 6688999998655533 3333 22 11111 355788999888444 666678666655444 2322
Q ss_pred CCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1238 GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1238 ~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
...... ..+.++++. ++++...|.|+.+.
T Consensus 110 ~~~~~~-~~~~~~~~~--~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 110 AGVRSS-SSPAVDGDR--LYVGTSSGKLVALD 138 (238)
T ss_dssp CSTB---SEEEEETTE--EEEEETCSEEEEEE
T ss_pred cccccc-cCceEecCE--EEEEeccCcEEEEe
Confidence 222222 222356677 67777789988875
No 170
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=34.01 E-value=3.6e+02 Score=36.90 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=66.2
Q ss_pred eeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEE-eCCeEEEEEccC--Ceee--eEEeecCCCeeEEEE
Q 000545 1128 GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIA-SGPKIILHKWTG--TELN--GIAFYDAPPLYVVSL 1202 (1432)
Q Consensus 1128 Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~-vg~~l~v~~~~~--~~L~--~~a~~~~~~~~i~sl 1202 (1432)
-.|++|++.++ ..|.=+.=.+..--|+++..++++|++| +-+.|....|+. .+|. .+.+-.. ..+-+..
T Consensus 1116 qKI~v~~l~r~-----~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l-~v~s~EF 1189 (1366)
T KOG1896|consen 1116 QKIIVRKLDRD-----SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPL-NVYSTEF 1189 (1366)
T ss_pred cEEEEEEeccC-----CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchh-hceeeee
Confidence 36888888653 2254455466666778888899998877 567788877765 3444 3444444 6666666
Q ss_pred EEeCC--EEEEEeccccEEEEEEecc
Q 000545 1203 NIVKN--FILLGDIHKSIYFLSWKEQ 1226 (1432)
Q Consensus 1203 ~~~~n--~IlvgD~~~Sv~ll~~~~~ 1226 (1432)
-+.|+ ..+|.|.-+-+.++.|.++
T Consensus 1190 LVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1190 LVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred EEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 67775 7889999999999999875
No 171
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=33.95 E-value=2e+02 Score=33.90 Aligned_cols=126 Identities=11% Similarity=0.230 Sum_probs=76.4
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC--CeEEEEEccCCeeee-EE-eecCCCeeEEE
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG--PKIILHKWTGTELNG-IA-FYDAPPLYVVS 1201 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg--~~l~v~~~~~~~L~~-~a-~~~~~~~~i~s 1201 (1432)
+.+.|.+|+.-... |- -|++.....++..- .+ +++.+++.+ .++|.|++.. |.. .. +.+. .+-|.+
T Consensus 208 sDrsIvLyD~R~~~--Pl--~KVi~~mRTN~Isw--nP-eafnF~~a~ED~nlY~~DmR~--l~~p~~v~~dh-vsAV~d 277 (433)
T KOG0268|consen 208 SDRSIVLYDLRQAS--PL--KKVILTMRTNTICW--NP-EAFNFVAANEDHNLYTYDMRN--LSRPLNVHKDH-VSAVMD 277 (433)
T ss_pred cCCceEEEecccCC--cc--ceeeeeccccceec--Cc-cccceeeccccccceehhhhh--hcccchhhccc-ceeEEE
Confidence 57789999986531 11 13333333443322 24 565555554 5677776643 222 11 2333 444544
Q ss_pred EEE--eCCEEEEEeccccEEEEEEecccCEEEEeeecc----CCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1202 LNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDF----GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1202 l~~--~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~----~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
+.. -|.-++-|-.-+||-++..+.. -+||. .-.+|+|+.+-.|... ++.+-.+||+.+.+
T Consensus 278 VdfsptG~EfvsgsyDksIRIf~~~~~------~SRdiYhtkRMq~V~~Vk~S~Dsky--i~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIRIFPVNHG------HSRDIYHTKRMQHVFCVKYSMDSKY--IISGSDDGNVRLWK 343 (433)
T ss_pred eccCCCcchhccccccceEEEeecCCC------cchhhhhHhhhheeeEEEEeccccE--EEecCCCcceeeee
Confidence 443 4778889999999999987643 24553 1237899998656544 88888899999987
No 172
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.94 E-value=9.5e+02 Score=30.80 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=62.8
Q ss_pred ecCceEEEcc-ccC-eEEEEeC--CeEEEEEccCC--eeee------EEeec-CCCeeEEEEEEeCC--EEEEEeccccE
Q 000545 1154 LKGAISALAS-LQG-HLLIASG--PKIILHKWTGT--ELNG------IAFYD-APPLYVVSLNIVKN--FILLGDIHKSI 1218 (1432)
Q Consensus 1154 ~~g~V~al~~-~~g-~Ll~~vg--~~l~v~~~~~~--~L~~------~a~~~-~~~~~i~sl~~~~n--~IlvgD~~~Sv 1218 (1432)
.+.-|.||+. .+. .++|+-| .+|++|++... +|+. .+.+- .--..|-++..-.+ .|+-|+..+=+
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 4566777775 444 4554443 79999999843 2222 11111 10122334444333 77778888877
Q ss_pred EEEEEecccC--EEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1219 YFLSWKEQGA--QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1219 ~ll~~~~~~~--~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
-|+ ++... .+-+. -+.-.|-++-..-|+.+ ++.+-.+|-|.+..+.
T Consensus 196 r~w--Dprt~~kimkLr---GHTdNVr~ll~~dDGt~--~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 196 RLW--DPRTCKKIMKLR---GHTDNVRVLLVNDDGTR--LLSASSDGTIRLWDLG 243 (735)
T ss_pred EEe--ccccccceeeee---ccccceEEEEEcCCCCe--EeecCCCceEEeeecc
Confidence 775 54332 22222 34445666653224445 7899999999998764
No 173
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.38 E-value=3.4e+02 Score=30.44 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=66.8
Q ss_pred ccC-eEEEE-eCCeEEEEEccCC-eeeeEEeecCCCeeEEEEEE----eCCEEEEEeccccEEEEEEecccCEEEEeee-
Q 000545 1164 LQG-HLLIA-SGPKIILHKWTGT-ELNGIAFYDAPPLYVVSLNI----VKNFILLGDIHKSIYFLSWKEQGAQLNLLAK- 1235 (1432)
Q Consensus 1164 ~~g-~Ll~~-vg~~l~v~~~~~~-~L~~~a~~~~~~~~i~sl~~----~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~ar- 1235 (1432)
|-| +|+.| ....|.||+...+ ++...+.++...-.|-++.- +|+ |+..-.+++=. .-|+++.++.....-
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkV-IiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKV-IIWKEENGRWTKAYEH 98 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc-EeeEeecCceE-EEEecCCCchhhhhhh
Confidence 444 55533 3468899999754 34555665543333444332 234 45555555543 336777665544322
Q ss_pred ccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCC
Q 000545 1236 DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPK 1273 (1432)
Q Consensus 1236 D~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~ 1273 (1432)
-.+.-.|.++.|...+--|.++++-.+|++.+|+|+.+
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 12455688888877777676889999999999999765
No 174
>KOG4328 consensus WD40 protein [Function unknown]
Probab=32.38 E-value=1.1e+02 Score=36.89 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=56.4
Q ss_pred cCCccEEEEEEEEcCC-eeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEec-CcceeEEEEEeeecCCCCCCCCC
Q 000545 1237 FGSLDCFATEFLIDGS-TLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHV-GAHVTKFLRLQMLATSSDRTGAA 1314 (1432)
Q Consensus 1237 ~~~~~vta~~fl~d~~-~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~l-g~~vt~~~~~~l~~~~~~~~~~~ 1314 (1432)
+.++-+++++|..-++ +| ++++|+.|++-+..+.-+.+ + -...--|+. +..|+++. +.|.+
T Consensus 184 v~~~Rit~l~fHPt~~~~l-va~GdK~G~VG~Wn~~~~~~-d-----~d~v~~f~~hs~~Vs~l~---F~P~n------- 246 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKL-VAVGDKGGQVGLWNFGTQEK-D-----KDGVYLFTPHSGPVSGLK---FSPAN------- 246 (498)
T ss_pred ecccceEEEEecccCcceE-EEEccCCCcEEEEecCCCCC-c-----cCceEEeccCCccccceE---ecCCC-------
Confidence 3556799999988777 66 89999999999988752211 1 122333443 34566654 23321
Q ss_pred CCCCCCCceEEEEEecCCcEEEEEeCChHhHHHHHHH
Q 000545 1315 PGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSL 1351 (1432)
Q Consensus 1315 ~g~~~~~~~~il~~t~~GsIg~l~pl~e~~~~~L~~L 1351 (1432)
...|+..+-+|+|++ .-+....++.+..+
T Consensus 247 -------~s~i~ssSyDGtiR~-~D~~~~i~e~v~s~ 275 (498)
T KOG4328|consen 247 -------TSQIYSSSYDGTIRL-QDFEGNISEEVLSL 275 (498)
T ss_pred -------hhheeeeccCceeee-eeecchhhHHHhhc
Confidence 246888889999976 45554455444444
No 175
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=31.86 E-value=1.2e+03 Score=29.95 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=93.8
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc
Q 000545 1065 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN 1144 (1432)
Q Consensus 1065 ~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 1144 (1432)
.|++.++. ..|-..-.+..+++-.+.+++.+ +..+++-+|- .|.|.-|++..
T Consensus 48 ~IEiwN~~---~~w~~~~vi~g~~drsIE~L~W~--------e~~RLFS~g~----------sg~i~EwDl~~------- 99 (691)
T KOG2048|consen 48 NIEIWNLS---NNWFLEPVIHGPEDRSIESLAWA--------EGGRLFSSGL----------SGSITEWDLHT------- 99 (691)
T ss_pred cEEEEccC---CCceeeEEEecCCCCceeeEEEc--------cCCeEEeecC----------CceEEEEeccc-------
Confidence 45555553 36777777788889999988866 1345666664 78888787753
Q ss_pred cEEEEEEEee-cCceEEEcc--ccCeEEEEeCC-eEEEEEccCCeeeeEEeecCCCeeEEEEEE-----------eCCEE
Q 000545 1145 LVTEVYSKEL-KGAISALAS--LQGHLLIASGP-KIILHKWTGTELNGIAFYDAPPLYVVSLNI-----------VKNFI 1209 (1432)
Q Consensus 1145 ~l~~v~~~~~-~g~V~al~~--~~g~Ll~~vg~-~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~-----------~~n~I 1209 (1432)
++.++..+. -|++-+|+- -+..+.++.-. -++.+..+.+++.-+..+.---..|.+|+- .+.+|
T Consensus 100 -lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 100 -LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred -CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 554555554 567766663 34455555322 233334443333322222110123333333 34457
Q ss_pred EEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1210 LLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1210 lvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
-++|+.++=++..... ++--+.+ ..+.-|-++.|| .+++ ++++|..|-+....
T Consensus 179 riwd~~~~~t~~~~~~---~~d~l~k-~~~~iVWSv~~L-rd~t--I~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITM---QLDRLSK-REPTIVWSVLFL-RDST--IASGDSAGTVTFWD 231 (691)
T ss_pred EEEEcCCCceEEEeee---ccccccc-CCceEEEEEEEe-ecCc--EEEecCCceEEEEc
Confidence 7777776655542221 1222222 122335578874 6678 89999999998874
No 176
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.54 E-value=1.9e+02 Score=37.32 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=37.2
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEEeC--CeEEEEEccCCee
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIASG--PKIILHKWTGTEL 1186 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~-~g~Ll~~vg--~~l~v~~~~~~~L 1186 (1432)
..|.+..|++.. +++.+ +++ ....|||+++.-- ++-+||.-| .+|.||+|+..+.
T Consensus 197 dsG~lqlWDlRq-p~r~~--~k~---~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 197 DSGYLQLWDLRQ-PDRCE--KKL---TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred CCceEEEeeccC-chhHH--HHh---hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 589999999964 22221 333 4478999998844 445555555 5799999986443
No 177
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.12 E-value=2.2e+02 Score=36.63 Aligned_cols=99 Identities=22% Similarity=0.253 Sum_probs=61.6
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc-cccCeEEEEeC--CeEEEEEccCC
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA-SLQGHLLIASG--PKIILHKWTGT 1184 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~-~~~g~Ll~~vg--~~l~v~~~~~~ 1184 (1432)
+..|++=|. +.-++.+|++... ...++. .-.+++|+||+ +-+|+-|+.-+ +.|.+|++...
T Consensus 546 Ns~Y~aTGS---------sD~tVRlWDv~~G-----~~VRiF--~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 546 NSNYVATGS---------SDRTVRLWDVSTG-----NSVRIF--TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cccccccCC---------CCceEEEEEcCCC-----cEEEEe--cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 455666553 2446677887653 123332 34789999998 34787665554 68999999986
Q ss_pred eeeeEEee-cCCCeeEEEEEEeCCEEEEEeccccEEEEEE
Q 000545 1185 ELNGIAFY-DAPPLYVVSLNIVKNFILLGDIHKSIYFLSW 1223 (1432)
Q Consensus 1185 ~L~~~a~~-~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~ 1223 (1432)
+++..-.- .. ..+-.+....++.+++|-+-.||.+.-+
T Consensus 610 ~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 610 SLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 65442221 22 3344445556778888888788888633
No 178
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.88 E-value=1.1e+03 Score=29.11 Aligned_cols=127 Identities=11% Similarity=0.113 Sum_probs=75.1
Q ss_pred cCceEEEc--cccCeEEEEeC--CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCC-EEEEEeccccEEEEEEecc-cC
Q 000545 1155 KGAISALA--SLQGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKN-FILLGDIHKSIYFLSWKEQ-GA 1228 (1432)
Q Consensus 1155 ~g~V~al~--~~~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n-~IlvgD~~~Sv~ll~~~~~-~~ 1228 (1432)
+..|.|.. +.++++++.-| .+|++|+..... .++.+++. ...|-++-...+ -+++.-.=.+|-+ |+-. .+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnh-g~pVe~vl~lpsgs~iasAgGn~vkV--WDl~~G~ 228 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNH-GCPVESVLALPSGSLIASAGGNSVKV--WDLTTGG 228 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecC-CCceeeEEEcCCCCEEEEcCCCeEEE--EEecCCc
Confidence 44555544 45777777665 799999987665 56777776 666666665543 2222222223333 3433 23
Q ss_pred EEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000545 1229 QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1298 (1432)
Q Consensus 1229 ~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~ 1298 (1432)
++. ...-.+..-|||..+--++.. ++.+--+|++-+|++. .+..+..|.....|-++
T Consensus 229 qll-~~~~~H~KtVTcL~l~s~~~r--LlS~sLD~~VKVfd~t----------~~Kvv~s~~~~~pvLsi 285 (487)
T KOG0310|consen 229 QLL-TSMFNHNKTVTCLRLASDSTR--LLSGSLDRHVKVFDTT----------NYKVVHSWKYPGPVLSI 285 (487)
T ss_pred eeh-hhhhcccceEEEEEeecCCce--EeecccccceEEEEcc----------ceEEEEeeecccceeeE
Confidence 321 111225667999996555555 6888889999999742 23445555555555554
No 179
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.74 E-value=1.2e+03 Score=29.46 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=75.2
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEcccc-CeEEEEeCCeEEEEEccCCe
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALASLQ-GHLLIASGPKIILHKWTGTE 1185 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~-~~~~g~V~al~~~~-g~Ll~~vg~~l~v~~~~~~~ 1185 (1432)
...++|.||. +|.|++|.+... ++.--.+ -...|+|.++..-+ -..+-++|...++-.|..+.
T Consensus 69 ~t~~lvlgt~---------~g~v~~ys~~~g------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 69 DTSMLVLGTP---------QGSVLLYSVAGG------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred CceEEEeecC---------CccEEEEEecCC------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 5689999995 899999999752 2433223 34678999887443 35667777666554554443
Q ss_pred eeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEc--CC-eeEEEEEecC
Q 000545 1186 LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLID--GS-TLSLVVSDEQ 1262 (1432)
Q Consensus 1186 L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d--~~-~l~~l~~D~~ 1262 (1432)
..-.|.+..-+.-+.+|....+-=+.+-+.+.+.++ +-+..+++.-.- .++-.|.+..|..+ +. -.+|+.+|..
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ik~~--~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTASRQIKVL--DIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEeccceEEEE--EccCceEEEEec-CCCcceEEEEEEEeccccccceeeecccc
Confidence 333333332234455666555522233345555554 555555544332 23334555555433 21 0126666554
Q ss_pred C
Q 000545 1263 K 1263 (1432)
Q Consensus 1263 g 1263 (1432)
.
T Consensus 211 ~ 211 (541)
T KOG4547|consen 211 E 211 (541)
T ss_pred c
Confidence 3
No 180
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=30.73 E-value=8.3e+02 Score=28.32 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=50.2
Q ss_pred CeEEEEEccCCeeeeEE---eecCCCeeEE--EE-EEeCC-EEEEEeccccEEEEEEecccCEEEEeeeccCCcc---EE
Q 000545 1174 PKIILHKWTGTELNGIA---FYDAPPLYVV--SL-NIVKN-FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLD---CF 1243 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a---~~~~~~~~i~--sl-~~~~n-~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~---vt 1243 (1432)
.++++|++++.++.+.- -.++-..+.. ++ -+.|+ ..+..|+.-.+.+++-++......+-.=+..... ..
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 47888999876665511 1111011111 11 12355 4556788888888887765444333322333333 33
Q ss_pred EEEEEEcCCeeEEEEEecCCcEEEE
Q 000545 1244 ATEFLIDGSTLSLVVSDEQKNIQIF 1268 (1432)
Q Consensus 1244 a~~fl~d~~~l~~l~~D~~gNl~vl 1268 (1432)
+.++-.-... ++++|..|.+.+.
T Consensus 126 slD~~~~~~~--i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 126 SLDISTSGTK--IFVSDSRGSISGV 148 (339)
T ss_pred EEEeeccCce--EEEEcCCCcEEEE
Confidence 4443222333 8999999999844
No 181
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.62 E-value=5.3e+02 Score=32.87 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=71.4
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEE----eecCceEEEccc-cCeEEEEeC--CeEEEEEccC-Ceeee-EEeecCCCe
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSK----ELKGAISALASL-QGHLLIASG--PKIILHKWTG-TELNG-IAFYDAPPL 1197 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~l~~v~~~----~~~g~V~al~~~-~g~Ll~~vg--~~l~v~~~~~-~~L~~-~a~~~~~~~ 1197 (1432)
.++|.+|++...+..--.....+... --+.+||+++.= +|.++++-| +-|++|+-.. +++.+ ++-.+. .
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN--V 216 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN--V 216 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccc--e
Confidence 67899999975321000001111111 235688998854 356776665 4578888763 33433 333333 4
Q ss_pred eEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1198 YVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1198 ~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
-+.-+.-.|++++-|-.---+-+..... .+.+.-+.-.-...|...+. .+-+. +..+|++|||+.-.
T Consensus 217 r~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~VWaL~~~--~sf~~--vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 217 RVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEGVWALQSS--PSFTH--VYSGGRDGNIYRTD 283 (735)
T ss_pred EEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCceEEEeeC--CCcce--EEecCCCCcEEecc
Confidence 4444555677887774444444432222 22222222122225655554 23344 78899999998754
No 182
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=30.07 E-value=1.3e+02 Score=37.50 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCcEEEEEeccceEEEEEEeCCCCCeeEEEeeeecCcccccccCCCccccCCCeEEECCCCcEEEEE--ecCceE
Q 000545 129 RRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVL--VYGLQM 201 (1432)
Q Consensus 129 ~~D~Lll~~~~~klsil~~d~~~~~l~t~Slh~~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~--~y~~~l 201 (1432)
+.|-|++++-+.|++....|-.+.-.++.-+| ++. .++=..--.++-+...-+.|-.++++ +|.+.|
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H--~~a----vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~ 686 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKA----VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLL 686 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhh--hhh----hhhhhhccccceeeeecCCCcEEEEeeeeehhhh
Confidence 47999999999999999888776655665555 331 11111111222334455567666665 665553
No 183
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=29.87 E-value=6.8e+02 Score=28.52 Aligned_cols=95 Identities=9% Similarity=0.196 Sum_probs=61.3
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc--cCeEEEEeC-CeEEEEEccCC
Q 000545 1108 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL--QGHLLIASG-PKIILHKWTGT 1184 (1432)
Q Consensus 1108 ~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~--~g~Ll~~vg-~~l~v~~~~~~ 1184 (1432)
...|++||- ..-+|-++++. +.+.+++++++--|.-++-- ++.++...| .+|.|..+-
T Consensus 117 ~g~~~~~~~---------kdD~it~id~r--------~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-- 177 (313)
T KOG1407|consen 117 DGEYIAVGN---------KDDRITFIDAR--------TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP-- 177 (313)
T ss_pred CCCEEEEec---------CcccEEEEEec--------ccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc--
Confidence 347888875 23455555553 35556666666666666632 446667777 789988886
Q ss_pred eeeeEEeecCC--CeeEEEEEEeCCEEEEEeccccEEEE
Q 000545 1185 ELNGIAFYDAP--PLYVVSLNIVKNFILLGDIHKSIYFL 1221 (1432)
Q Consensus 1185 ~L~~~a~~~~~--~~~i~sl~~~~n~IlvgD~~~Sv~ll 1221 (1432)
.|.++..+... ..+.+.+...|-++.+|-+--.|+|.
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 56676666553 44555556678899999766666664
No 184
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=29.86 E-value=6.5e+02 Score=30.23 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc--CeEEEEeC-CeEEEEEc
Q 000545 1105 TKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ--GHLLIASG-PKIILHKW 1181 (1432)
Q Consensus 1105 ~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~--g~Ll~~vg-~~l~v~~~ 1181 (1432)
+.+...+++|+|+ .-+.++|++..++. ..+++-...+.-..+|+.... -+.+++.+ +.++-++.
T Consensus 70 ~s~~~~llAv~~~---------~K~~~~f~~~~~~~----~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 70 TSDSGRLVAVATS---------SKQRAVFDYRENPK----GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cCCCceEEEEEeC---------CCceEEEEEecCCC----cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 3456789999994 44566777776432 367777777777777776543 35554443 34443332
Q ss_pred ---cCCeeeeEEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEE
Q 000545 1182 ---TGTELNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSL 1256 (1432)
Q Consensus 1182 ---~~~~L~~~a~~~~~~~~i~sl~~~--~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~ 1256 (1432)
.+....+ .+.. -++++.+.+. +.+|+.+|--+=|.+.+|-. ...+.-++- -+.-.|.... +.++.. +
T Consensus 137 ~s~~~~~~~~--~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesfcl-GH~eFVS~is-l~~~~~--L 208 (390)
T KOG3914|consen 137 LSADSGRCEP--ILGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCL-GHKEFVSTIS-LTDNYL--L 208 (390)
T ss_pred ecccccCcch--hhhh-hhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhcc-ccHhheeeee-eccCce--e
Confidence 2111111 1112 2345555554 45999999999999998842 111111111 1334566676 567655 7
Q ss_pred EEEecCCcEEEEeeC
Q 000545 1257 VVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1257 l~~D~~gNl~vl~~~ 1271 (1432)
+.+--+++|++..|.
T Consensus 209 lS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDIT 223 (390)
T ss_pred eecCCCCcEEEEecc
Confidence 888889999999874
No 185
>PRK03629 tolB translocation protein TolB; Provisional
Probab=29.85 E-value=5.5e+02 Score=31.72 Aligned_cols=95 Identities=8% Similarity=0.092 Sum_probs=51.5
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilvg-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
..|+++++...+......... ...-...+..+.+|++. +.-....++.++.+.+++..+.... ..++...|..|++
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~-~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~--~~~~~~~wSPDG~ 299 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR--SNNTEPTWFPDSQ 299 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC-CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC--CCcCceEECCCCC
Confidence 467788876554443333322 11122344456666654 3222334555666666666665442 2355666666777
Q ss_pred eeEEEEEecCCcEEEEeeCC
Q 000545 1253 TLSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1253 ~l~~l~~D~~gNl~vl~~~p 1272 (1432)
.| +.++|+.|+..++.++.
T Consensus 300 ~I-~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 300 NL-AYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EE-EEEeCCCCCceEEEEEC
Confidence 76 45677777655655543
No 186
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=29.78 E-value=5.6e+02 Score=30.88 Aligned_cols=157 Identities=7% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCEEEEEEecCCCCCCCCcccccccCcCcceEEEEeccccceEEEeccceeeeecccccccccceEEEeeecCCc--EEE
Q 000545 547 CKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRR--RVI 624 (1432)
Q Consensus 547 ~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eEv~~~~gF~~~~~Tl~ag~l~~~~--~iv 624 (1432)
...+|-+... ..++|+++.+.+.-.-+---++-++. |....+.-|.--.+..++ .+|
T Consensus 354 ~~~v~dlait-----------------~Dgk~vl~v~~d~~i~l~~~e~~~dr----~lise~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 354 DPKVHDLAIT-----------------YDGKYVLLVTVDKKIRLYNREARVDR----GLISEEQPITSFSISKDGKLALV 412 (519)
T ss_pred cceeEEEEEc-----------------CCCcEEEEEecccceeeechhhhhhh----ccccccCceeEEEEcCCCcEEEE
Q ss_pred EEecCcEEEEcCCcceEEEeCCCCCCCCCCCCCCccEEEEEE---eCCEEEEEEeCCcEEEEEecCCCceEEeecCcccc
Q 000545 625 QVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSI---ADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIE 701 (1432)
Q Consensus 625 QVt~~~irli~~~~~~~~~~~~~~~~~~~~~~~~~~I~~asi---~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~ 701 (1432)
-+-++++++.|-+..++.-+. .+-.++.-|+...+ ++.+|+=..+|+.|....-......-++.-.
T Consensus 413 nL~~qei~LWDl~e~~lv~kY-------~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH---- 481 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKY-------FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH---- 481 (519)
T ss_pred EcccCeeEEeecchhhHHHHh-------hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC----
Q ss_pred CCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCC
Q 000545 702 SSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNF 771 (1432)
Q Consensus 702 ~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~ 771 (1432)
...+.|++- ++....++|-+.+||+++||...+.
T Consensus 482 --s~~vNcVsw----------------------------------NP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 482 --SKTVNCVSW----------------------------------NPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred --cceeeEEec----------------------------------CCCCHHHhhccCCCCeEEEecCCcc
No 187
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=29.75 E-value=86 Score=35.62 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=37.1
Q ss_pred ceEEEEeCCCCEEEEEEEEcCeeeeeEEEEec-----CCCccccceEEecCCeEEEEeecCCeeEEEEe
Q 000545 375 DVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT-----NPSVLTSDITTIGNSLFFLGSRLGDSLLVQFT 438 (1432)
Q Consensus 375 ~~~Ll~~~~G~l~~l~l~~dg~~V~~l~i~~~-----~~~~~~s~l~~l~~g~lF~gS~~GDS~L~~~~ 438 (1432)
..++|.+++..|.. +..+|+-++.+.+..- ...+.|..|+.-.+|.|||-|| .| .+|+|.
T Consensus 184 ~lliLS~es~~l~~--~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pN-lfy~f~ 248 (248)
T PF06977_consen 184 HLLILSDESRLLLE--LDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PN-LFYRFE 248 (248)
T ss_dssp EEEEEETTTTEEEE--E-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TT-EEEEEE
T ss_pred eEEEEECCCCeEEE--ECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-Cc-eEEEeC
Confidence 35677777777744 4467777777777752 4678899999999999999999 44 788773
No 188
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=29.75 E-value=5.2e+02 Score=31.17 Aligned_cols=128 Identities=19% Similarity=0.220 Sum_probs=83.3
Q ss_pred eeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccC-eEEEEeC-CeEEEEEccCCeeeeEE----eecCCCeeEE
Q 000545 1128 GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQG-HLLIASG-PKIILHKWTGTELNGIA----FYDAPPLYVV 1200 (1432)
Q Consensus 1128 Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~-~~g-~Ll~~vg-~~l~v~~~~~~~L~~~a----~~~~~~~~i~ 1200 (1432)
+.|..|++-. -..+.+.+.-|.|+++.- ++| .|+.++= ..+-++++..++..... |....-..-+
T Consensus 322 kkvRfwD~Rs--------~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 322 KKVRFWDIRS--------ADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred cceEEEeccC--------CceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 3477777643 233556778899999984 556 4665543 57778888766544322 2222011122
Q ss_pred EEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCc-cEEEEEEEEcCCeeEEEEEecCCcEEE
Q 000545 1201 SLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSL-DCFATEFLIDGSTLSLVVSDEQKNIQI 1267 (1432)
Q Consensus 1201 sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~-~vta~~fl~d~~~l~~l~~D~~gNl~v 1267 (1432)
.++..+.|++.|-+-.||++. .-...+++.+.+-.... .++++.|-..++. ++.+|+++-..+
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW--~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~--Llsadk~~~v~l 457 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIW--SVFTGKLEKVLSLSTSNAAITSLSWNPSGSG--LLSADKQKAVTL 457 (459)
T ss_pred EECCCCceeeeccCCCcEEEE--EccCceEEEEeccCCCCcceEEEEEcCCCch--hhcccCCcceEe
Confidence 344567899999999999886 44577888777766555 7999998555555 788998766544
No 189
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=29.71 E-value=1.4e+02 Score=33.87 Aligned_cols=202 Identities=15% Similarity=0.130 Sum_probs=105.7
Q ss_pred EEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-------
Q 000545 1093 LTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ------- 1165 (1432)
Q Consensus 1093 ~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~------- 1165 (1432)
.||..+.+. +++..-|+||..-..+ ..-+|.||+= ..+.++...-+.+.||+.|-
T Consensus 18 sC~~l~Dl~----gDGd~kLvvaD~g~~~----~~~kLKVykG----------t~l~~E~~L~d~P~ai~sFy~d~~ep~ 79 (257)
T PF14779_consen 18 SCMALADLQ----GDGDYKLVVADLGTGD----QNMKLKVYKG----------TSLISEITLPDLPSAIVSFYMDEHEPR 79 (257)
T ss_pred ceeEeeecC----CCCeEEEEEEecCCcC----CCceEEEEcC----------CChhhcccccCCCeEEEEEeccCCCCC
Confidence 356655553 3456778888743111 1227777652 44566677889999999882
Q ss_pred -CeEEEEeCCeEEEEEccC---------Ce--------eeeE--EeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEec
Q 000545 1166 -GHLLIASGPKIILHKWTG---------TE--------LNGI--AFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKE 1225 (1432)
Q Consensus 1166 -g~Ll~~vg~~l~v~~~~~---------~~--------L~~~--a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~ 1225 (1432)
--|.+|.|+.|++|+=-+ -+ +... ..++. ......|...++.=.+-=..+|..|+..++
T Consensus 80 ~P~iAVA~G~~vyiYkNlkP~yKftlP~~~~~~~E~eiW~~~~~~~i~~-~~l~~~L~~lr~~~~~~LS~rSl~~L~l~~ 158 (257)
T PF14779_consen 80 TPAIAVAAGPSVYIYKNLKPFYKFTLPPLEINPLEQEIWQQLREGKIDP-ETLKEMLESLRDIAGVKLSPRSLRFLQLDP 158 (257)
T ss_pred CCeEEEEeCCEEEEEecccceeeecCCCCCCCHHHHHHHHhcccCCCCH-HHHHHHHHHHhhccCCccCHHHHHHHCCCH
Confidence 138999999999976321 00 0000 00000 000000111111000001235556665544
Q ss_pred ccC-EEEEeeecc---CCccEEEEEEEE----cCCee-EEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCccee
Q 000545 1226 QGA-QLNLLAKDF---GSLDCFATEFLI----DGSTL-SLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVT 1296 (1432)
Q Consensus 1226 ~~~-~l~~~arD~---~~~~vta~~fl~----d~~~l-~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt 1296 (1432)
++. .|+..-++. ++.-+||+.-+- |++.. .++.+-..|.|+++. |+ -+....++.++..+.
T Consensus 159 ee~~~fi~~~k~~pl~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd--~~--------af~il~~~~lpsvPv 228 (257)
T PF14779_consen 159 EEREAFIERYKDSPLKRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILD--PQ--------AFTILKQVQLPSVPV 228 (257)
T ss_pred HHHHHHHHHHhcCCcccCceeEEeeeecccccCCCCcceEEEEecCCeEEEEC--ch--------hheeEEEEecCCCce
Confidence 322 222222221 223467776431 21111 256677889999984 33 245566788888877
Q ss_pred EEEE-EeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEEEE
Q 000545 1297 KFLR-LQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIA 1338 (1432)
Q Consensus 1297 ~~~~-~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~l~ 1338 (1432)
.+.- |.+. .....|+-+|-+|.|+.|.
T Consensus 229 ~i~~~G~~d---------------evdyRI~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 229 FISVSGQYD---------------EVDYRIVVACRDGKIYTIR 256 (257)
T ss_pred EEEEEeeee---------------ccceEEEEEeCCCEEEEEe
Confidence 6553 1111 1246899999999999874
No 190
>PRK04922 tolB translocation protein TolB; Provisional
Probab=29.05 E-value=5.3e+02 Score=31.87 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=52.9
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilvg-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
..|++|++...+....+.... ..........+++|++. +.-..-.++.++...+++..+..+.. ..+...|..|+.
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~spDG~ 304 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG--IDTEPTWAPDGK 304 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC--CccceEECCCCC
Confidence 468888887655444443333 22222344557777654 43344456666766666666654422 234566666777
Q ss_pred eeEEEEEecCCcEEEEee
Q 000545 1253 TLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1253 ~l~~l~~D~~gNl~vl~~ 1270 (1432)
.| +.++|+.|+..++.+
T Consensus 305 ~l-~f~sd~~g~~~iy~~ 321 (433)
T PRK04922 305 SI-YFTSDRGGRPQIYRV 321 (433)
T ss_pred EE-EEEECCCCCceEEEE
Confidence 76 556788777444444
No 191
>PRK02889 tolB translocation protein TolB; Provisional
Probab=28.45 E-value=4.2e+02 Score=32.67 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=55.6
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
..|++|++...+..+...... .......+..++.|++ .+-.....++.++.....+..+.++. -..+...|..|+.
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~~~~~~~wSpDG~ 296 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS--GIDTEPFFSPDGR 296 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC--CCCcCeEEcCCCC
Confidence 468889987665555443333 2222233445667765 45555566777776655565554432 2334556666777
Q ss_pred eeEEEEEecCCcEEEEeeC
Q 000545 1253 TLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1253 ~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.| +.++|+.|+..++.++
T Consensus 297 ~l-~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 297 SI-YFTSDRGGAPQIYRMP 314 (427)
T ss_pred EE-EEEecCCCCcEEEEEE
Confidence 77 4568888877777664
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=28.44 E-value=2.2e+02 Score=35.30 Aligned_cols=113 Identities=10% Similarity=0.157 Sum_probs=60.4
Q ss_pred cCceEEEccc-c-CeEEEEeCCeEEEEEccC-----CeeeeEEeecCCCeeEEEEEE----e-CCEEEEEeccccEEEEE
Q 000545 1155 KGAISALASL-Q-GHLLIASGPKIILHKWTG-----TELNGIAFYDAPPLYVVSLNI----V-KNFILLGDIHKSIYFLS 1222 (1432)
Q Consensus 1155 ~g~V~al~~~-~-g~Ll~~vg~~l~v~~~~~-----~~L~~~a~~~~~~~~i~sl~~----~-~n~IlvgD~~~Sv~ll~ 1222 (1432)
.|.++...+- + ++|+..+|.++|+|.+.. +.+.+..+..+ ....+.... - +--++||=-..=|.++-
T Consensus 123 sg~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 123 SGIVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ccceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEec
Confidence 3444444432 3 389999999999999973 12333333322 222222211 0 11222221111111110
Q ss_pred E-ecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1223 W-KEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1223 ~-~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
= +.+-.+|.-..+-..+..|||...+..++.+ |+++-..||+++|.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~-Fl~a~~sGnlyly~ 248 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSL-FLVAHASGNLYLYD 248 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCce-EEEEEecCceEEee
Confidence 0 0111233333445566789999987766676 89999999999985
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=27.89 E-value=1.1e+03 Score=28.18 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred EEeccCCCCCCceeeeeEECCCCCceEEEEEEE----eeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCC
Q 000545 1067 RILEPDRAGGPWQTRATIPMQSSENALTVRVVT----LFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNP 1142 (1432)
Q Consensus 1067 ~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~----l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~ 1142 (1432)
++++ +..|+++-.+..+.-|.+--..--. ...-........++|-| .-|++.++++.+.+..+
T Consensus 119 ~~~S----G~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---------~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 119 FLYS----GERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---------RAKLVSFIDNRDRQNPI 185 (609)
T ss_pred eEec----CCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---------cCceEEEEeccCCCCCC
Q ss_pred CccEEEEEEEeecCceEEEccccCeEEEEeCCe--EEEEEccCCe---eeeEEeecCCCe-----eEEEEEEeCCEEEEE
Q 000545 1143 QNLVTEVYSKELKGAISALASLQGHLLIASGPK--IILHKWTGTE---LNGIAFYDAPPL-----YVVSLNIVKNFILLG 1212 (1432)
Q Consensus 1143 ~~~l~~v~~~~~~g~V~al~~~~g~Ll~~vg~~--l~v~~~~~~~---L~~~a~~~~~~~-----~i~sl~~~~n~Ilvg 1212 (1432)
+ +-+.+...-.---.-..+..-.|++..+.+ +-+|+....+ +.+..|... |. +-+--...|+.++.
T Consensus 186 ~--~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L-~~~~~~~M~~~~~~~G~Q~ms- 261 (609)
T KOG4227|consen 186 S--LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL-PQENTEWMGSLWSPSGNQFMS- 261 (609)
T ss_pred c--eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC-cccchhhhheeeCCCCCeehh-
Q ss_pred eccccEEEEEEecccCEEEEeeeccCC------ccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCC
Q 000545 1213 DIHKSIYFLSWKEQGAQLNLLAKDFGS------LDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMS 1275 (1432)
Q Consensus 1213 D~~~Sv~ll~~~~~~~~l~~~arD~~~------~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~ 1275 (1432)
++++..=+-|+.-..++-.+--|.++ .-+-+++| +++-+ ++.+-.+-||++.+.+..+.
T Consensus 262 -iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F-~~D~~--v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 262 -IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTF-IDDYT--VATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred -hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeee-eccee--eeccCcccceEEEecCCCcc
No 194
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.70 E-value=1.5e+02 Score=39.84 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=37.7
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEc--cccCeEEEEeC--CeEEEEEccC
Q 000545 1126 ARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALA--SLQGHLLIASG--PKIILHKWTG 1183 (1432)
Q Consensus 1126 ~~Gri~vf~i~~~~~~~~~~l~~v~~-~~~~g~V~al~--~~~g~Ll~~vg--~~l~v~~~~~ 1183 (1432)
..|.|.+|+..+...+ .+..++.. ...+|+|.+|. .++|.+||+-+ .+|+||++.+
T Consensus 88 edG~I~ly~p~~~~~~--~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn 148 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIAN--ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK 148 (1049)
T ss_pred cCCceEEecchhhccC--cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC
Confidence 4799999998763111 12333333 44689999976 45677777654 5899999975
No 195
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=27.64 E-value=1.2e+03 Score=28.40 Aligned_cols=119 Identities=11% Similarity=0.138 Sum_probs=62.8
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEE---eC----CEEEEEecc---ccEEEEEEecccCEEEEeeeccCC----
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNI---VK----NFILLGDIH---KSIYFLSWKEQGAQLNLLAKDFGS---- 1239 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~---~~----n~IlvgD~~---~Sv~ll~~~~~~~~l~~~arD~~~---- 1239 (1432)
.-|++|+++.+++.....-. ..-+.+.. .+ +.++++|-. .++.+++.++....|..+..-..|
T Consensus 78 ~GL~VYdL~Gk~lq~~~~Gr---~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~ 154 (381)
T PF02333_consen 78 GGLYVYDLDGKELQSLPVGR---PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATD 154 (381)
T ss_dssp TEEEEEETTS-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-S
T ss_pred CCEEEEcCCCcEEEeecCCC---cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccc
Confidence 35788899888776553211 11112211 12 245666653 689999999877888877542222
Q ss_pred -ccEEEEEEEEc--CCeeEEEEEecCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000545 1240 -LDCFATEFLID--GSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1298 (1432)
Q Consensus 1240 -~~vta~~fl~d--~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~kL~~~~~f~lg~~vt~~ 1298 (1432)
..++.+++.-+ ...++.++.+++|.+.-|++........ .-..+-+|.++..+-.+
T Consensus 155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v---~~~lVR~f~~~sQ~EGC 213 (381)
T PF02333_consen 155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKV---SATLVREFKVGSQPEGC 213 (381)
T ss_dssp SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSE---EEEEEEEEE-SS-EEEE
T ss_pred cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcE---eeEEEEEecCCCcceEE
Confidence 34666664322 2467899999999999888753321111 12334456666655443
No 196
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=27.45 E-value=6.6e+02 Score=29.07 Aligned_cols=25 Identities=12% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEecCCeEEEEECCCCceeEEe
Q 000545 753 YSVVCYESGALEIFDVPNFNCVFTV 777 (1432)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~~~ 777 (1432)
.++-+.+||+++||+...-+|+...
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tf 386 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTF 386 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhc
Confidence 6667889999999999887776543
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=27.11 E-value=1.4e+03 Score=29.23 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=53.0
Q ss_pred eeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEE
Q 000545 1082 ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISAL 1161 (1432)
Q Consensus 1082 ~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al 1161 (1432)
..+.|+..-.++|++.+.+. ..+++.|+ ..|.|.+|++......+...+- .+....+.+|+++
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~-------p~ll~gG~---------y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFD-------PNLLAGGC---------YNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEecCCceeEEEeccCC-------cceEEeec---------cCceEEEEEccCCCCCCCcccc-cccccCCcCeEEE
Confidence 34556666678888877653 35666666 4899999999764332211121 2233467888888
Q ss_pred ccccC-----eEEEEeCCeEEEEEccC
Q 000545 1162 ASLQG-----HLLIASGPKIILHKWTG 1183 (1432)
Q Consensus 1162 ~~~~g-----~Ll~~vg~~l~v~~~~~ 1183 (1432)
+..+. .+-.+.-.+|..|+.+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccc
Confidence 86642 34455667888887753
No 198
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.08 E-value=3.5e+02 Score=37.39 Aligned_cols=110 Identities=13% Similarity=0.331 Sum_probs=61.9
Q ss_pred cCeEEEEeCCeEEEEEccC-CeeeeEEeecCCCeeEEEEEE-----------eCCEEEEEeccccEEEEE-EecccCEEE
Q 000545 1165 QGHLLIASGPKIILHKWTG-TELNGIAFYDAPPLYVVSLNI-----------VKNFILLGDIHKSIYFLS-WKEQGAQLN 1231 (1432)
Q Consensus 1165 ~g~Ll~~vg~~l~v~~~~~-~~L~~~a~~~~~~~~i~sl~~-----------~~n~IlvgD~~~Sv~ll~-~~~~~~~l~ 1231 (1432)
=|+..+.++++|++|.++. +++ +++|.+...|.++.. +...++|+..++=+-+-- |++..+.+.
T Consensus 90 I~RaWiTiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 90 IGRAWITIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred hcceEEEeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 4799999999999999986 222 222221222222222 245677777666333221 233334333
Q ss_pred Eeeec----cCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCce
Q 000545 1232 LLAKD----FGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQK 1282 (1432)
Q Consensus 1232 ~~arD----~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~k 1282 (1432)
.+... .....|.++.. .++..+ ..+-++||||=+.|..++ +|-++|
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~-t~nGRI--F~~G~dg~lyEl~Yq~~~--gWf~~r 216 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITY-TENGRI--FFAGRDGNLYELVYQAED--GWFGSR 216 (1311)
T ss_pred ccccceeeecCCceEEEEEe-ccCCcE--EEeecCCCEEEEEEeccC--chhhcc
Confidence 33333 23456777763 677785 334455699998886543 565443
No 199
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=26.88 E-value=1.1e+03 Score=27.61 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=86.3
Q ss_pred EEEEEEEeecCceEEEccccCeEEEEeC-CeEEEEEccC-CeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEE
Q 000545 1146 VTEVYSKELKGAISALASLQGHLLIASG-PKIILHKWTG-TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSW 1223 (1432)
Q Consensus 1146 l~~v~~~~~~g~V~al~~~~g~Ll~~vg-~~l~v~~~~~-~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~ 1223 (1432)
..++..-..++-+.-+.--..|..++-+ +-|+|+++.. .+=..+.|+++ .-|.-...+-||+.+|+|+-.++-.+..
T Consensus 77 ~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 77 DVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred cceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCCEEEEeeccCcEEEEEC
Confidence 4445555555655555544567777766 4688889874 33556778777 6677778888999999999888766643
Q ss_pred ecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEee-CCCCC
Q 000545 1224 KEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY-APKMS 1275 (1432)
Q Consensus 1224 ~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~-~p~~~ 1275 (1432)
.++.+=.+.+|=-.+-|-+.-. .+.+++ -.+++.++-|.++.. +|..|
T Consensus 156 -sdpssP~lagrya~~~~d~~~v-~ISGn~--AYvA~~d~GL~ivDVSnp~sP 204 (370)
T COG5276 156 -SDPSSPQLAGRYALPGGDTHDV-AISGNY--AYVAWRDGGLTIVDVSNPHSP 204 (370)
T ss_pred -CCCCCceeeeeeccCCCCceeE-EEecCe--EEEEEeCCCeEEEEccCCCCC
Confidence 3455666777766666655443 477787 567999999999986 45444
No 200
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=26.54 E-value=1.4e+02 Score=22.89 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=23.5
Q ss_pred eEEEEEec--CeEEEEEcCCCCccCCCcceEEEeeCCCcccEEEEe
Q 000545 968 GFIYVTSQ--GILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYF 1011 (1432)
Q Consensus 968 g~i~~~~~--~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~ 1011 (1432)
..+|++.. +.+.+ ++... ...+++ ++++..|+.|+++
T Consensus 4 ~~lyv~~~~~~~v~~--id~~~----~~~~~~-i~vg~~P~~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSGSNTVSV--IDTAT----NKVIAT-IPVGGYPFGVAVS 42 (42)
T ss_pred CEEEEEeCCCCEEEE--EECCC----CeEEEE-EECCCCCceEEeC
Confidence 34666543 44444 44322 246778 9999999999874
No 201
>KOG4328 consensus WD40 protein [Function unknown]
Probab=25.43 E-value=3.5e+02 Score=32.92 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=58.8
Q ss_pred ecCceEEEc--cccCeEEEEeC---CeEEEEEcc--CCeeee-EEeecCCCeeEEEEEEeC---CEEEEEeccccEEEEE
Q 000545 1154 LKGAISALA--SLQGHLLIASG---PKIILHKWT--GTELNG-IAFYDAPPLYVVSLNIVK---NFILLGDIHKSIYFLS 1222 (1432)
Q Consensus 1154 ~~g~V~al~--~~~g~Ll~~vg---~~l~v~~~~--~~~L~~-~a~~~~~~~~i~sl~~~~---n~IlvgD~~~Sv~ll~ 1222 (1432)
+.+.|+++. +-..+=++++| ..|.+|+++ ++.--+ +-|... ...|.+|.... +.|+..-.--.+-+.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~- 262 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQ- 262 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEecCCChhheeeeccCceeeee-
Confidence 345555554 22332233444 568899995 222222 222233 34455555432 244443333333333
Q ss_pred EecccCEEEEeee-ccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1223 WKEQGAQLNLLAK-DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1223 ~~~~~~~l~~~ar-D~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
+-+.+.+.++.+ |....|...++|.-++.. ++.+|..||+.++...
T Consensus 263 -D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~--vl~~~~~G~f~~iD~R 309 (498)
T KOG4328|consen 263 -DFEGNISEEVLSLDTDNIWFSSLDFSAESRS--VLFGDNVGNFNVIDLR 309 (498)
T ss_pred -eecchhhHHHhhcCccceeeeeccccCCCcc--EEEeecccceEEEEee
Confidence 223445555543 356678889998444444 7889999977776544
No 202
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.42 E-value=5.7e+02 Score=30.84 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.7
Q ss_pred EEEEEEecCCeEEEEECCCCceeEEe
Q 000545 752 IYSVVCYESGALEIFDVPNFNCVFTV 777 (1432)
Q Consensus 752 ~~l~v~~~~g~l~I~sLp~~~~v~~~ 777 (1432)
-|++.|..||+|+||++...++.+..
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEe
Confidence 38889999999999999887775554
No 203
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=25.37 E-value=1.8e+02 Score=38.69 Aligned_cols=107 Identities=14% Similarity=0.018 Sum_probs=59.0
Q ss_pred CceEEEccccCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCE-EEEee
Q 000545 1156 GAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQ-LNLLA 1234 (1432)
Q Consensus 1156 g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~-l~~~a 1234 (1432)
||+.+..-+++||+|+.|..+++|++....|++....-- ..-++ .....+--+.-+.|+.++|++...+ ....+
T Consensus 8 ~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~-~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 8 GPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSK-ILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred ccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhc-ccccc----cccccceeccceEEEEEeecceeecchhhhh
Confidence 566666666799999999999999999876554322111 01111 1111122233445666666654433 23334
Q ss_pred eccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEe
Q 000545 1235 KDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1235 rD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
-+..+.|++.+.+--++.. ++..-.+..+++..
T Consensus 83 ~~~~s~wi~g~~l~~e~k~--i~l~~~~ns~~i~d 115 (967)
T KOG0974|consen 83 IERFSDWIFGAKLFEENKK--IALVTSRNSLLIRD 115 (967)
T ss_pred hhhccccccccchhhhcce--EEEEEcCceEEEEe
Confidence 4566778888775334444 33344444444443
No 204
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=24.98 E-value=6.8e+02 Score=29.69 Aligned_cols=18 Identities=17% Similarity=0.435 Sum_probs=13.5
Q ss_pred EEEEEeccCCCCCCceeeee
Q 000545 1064 YEVRILEPDRAGGPWQTRAT 1083 (1432)
Q Consensus 1064 ~~v~l~dp~~~~~~~~~~~~ 1083 (1432)
..++.+||.+ .+|..+..
T Consensus 168 ~~v~~YDp~t--~~W~~~~~ 185 (346)
T TIGR03547 168 KNVLSYDPST--NQWRNLGE 185 (346)
T ss_pred ceEEEEECCC--CceeECcc
Confidence 4688999975 58998764
No 205
>PRK04792 tolB translocation protein TolB; Provisional
Probab=24.88 E-value=5.2e+02 Score=32.17 Aligned_cols=94 Identities=10% Similarity=-0.005 Sum_probs=47.8
Q ss_pred eEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCe
Q 000545 1175 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGST 1253 (1432)
Q Consensus 1175 ~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~ 1253 (1432)
.|+++++...+......... ...-......++.|++ .+.-....++.++.+.+++..+..+. ...+...|..|++.
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~--~~~~~p~wSpDG~~ 319 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR--AIDTEPSWHPDGKS 319 (448)
T ss_pred EEEEEECCCCCeEEecCCCC-CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC--CCccceEECCCCCE
Confidence 46666665443333332222 1111223344555544 34434445555666666666555432 13344555567777
Q ss_pred eEEEEEecCCcEEEEeeCC
Q 000545 1254 LSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1254 l~~l~~D~~gNl~vl~~~p 1272 (1432)
| ++.+|+.|+..++.++.
T Consensus 320 I-~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 320 L-IFTSERGGKPQIYRVNL 337 (448)
T ss_pred E-EEEECCCCCceEEEEEC
Confidence 6 45678777766666554
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=24.86 E-value=1.3e+03 Score=29.79 Aligned_cols=91 Identities=14% Similarity=0.213 Sum_probs=59.1
Q ss_pred eCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcC
Q 000545 1172 SGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG 1251 (1432)
Q Consensus 1172 vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~ 1251 (1432)
=|+++-.|.+.++.+-+.--+.. -....+--..|.++++|-.-+.+.++ ..+.-+|--++. ...|+-++..-.+.
T Consensus 201 W~qTLSFy~LsG~~Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~f--TR~GvrLGTvg~--~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 201 WGQTLSFYQLSGKQIGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLF--TRDGVRLGTVGE--QDSWIWTVQAKPNS 275 (1081)
T ss_pred ccceeEEEEecceeecccccCCC-CchhheeccCCcEEEEccCCCceEEE--eecCeEEeeccc--cceeEEEEEEccCC
Confidence 46888888887764332222222 22333444568899999999999986 455667777776 55566666633455
Q ss_pred CeeEEEEEecCCcEEEEe
Q 000545 1252 STLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1252 ~~l~~l~~D~~gNl~vl~ 1269 (1432)
.+ +..+=.+|.|-.|.
T Consensus 276 Q~--v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 276 QY--VVVGCQDGTIACYN 291 (1081)
T ss_pred ce--EEEEEccCeeehhh
Confidence 55 67777888887664
No 207
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=24.47 E-value=1.6e+02 Score=36.09 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=33.5
Q ss_pred EECCCCCceEEEEEEEeeecC---CCCcceEEEEEeeeecCCCcccceeEEEEEEe
Q 000545 1084 IPMQSSENALTVRVVTLFNTT---TKENETLLAIGTAYVQGEDVAARGRVLLFSTG 1136 (1432)
Q Consensus 1084 ~~l~~~E~v~si~~v~l~~~~---~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~ 1136 (1432)
.+.+++|.++|++++.|.+.. +..+-.+|+||| +.|++++|.-.
T Consensus 51 l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~---------ssG~vrfyte~ 97 (415)
T PF14655_consen 51 LDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT---------SSGYVRFYTEN 97 (415)
T ss_pred ccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe---------cccEEEEEecc
Confidence 455667999999999996421 233579999999 58999999863
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=24.23 E-value=7.9e+02 Score=30.30 Aligned_cols=111 Identities=8% Similarity=0.060 Sum_probs=60.6
Q ss_pred cCceEEEcc-ccC-eEEEEe----CCeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEeccc
Q 000545 1155 KGAISALAS-LQG-HLLIAS----GPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQG 1227 (1432)
Q Consensus 1155 ~g~V~al~~-~~g-~Ll~~v----g~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilv-gD~~~Sv~ll~~~~~~ 1227 (1432)
++++.+..- -+| +|+... ...|++|++...+..+...... ...-......+..|++ .+.-....++.++.+.
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 445555431 244 344433 2578999987665444443333 2222334456666654 3433445566667666
Q ss_pred CEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCc--EEEEe
Q 000545 1228 AQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKN--IQIFY 1269 (1432)
Q Consensus 1228 ~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gN--l~vl~ 1269 (1432)
+.+..+..... ..+...|..|++.| +.++|+.|+ |+++.
T Consensus 280 ~~~~~Lt~~~~--~~~~~~~spDG~~i-~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 280 GTTTRLTDSPA--IDTSPSYSPDGSQI-VFESDRSGSPQLYVMN 320 (435)
T ss_pred CceEEccCCCC--ccCceeEcCCCCEE-EEEECCCCCCeEEEEE
Confidence 66666654332 34455666677777 456777764 55544
No 209
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=24.10 E-value=1e+03 Score=27.72 Aligned_cols=141 Identities=16% Similarity=0.276 Sum_probs=69.6
Q ss_pred eEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc--CeEEEEeCCe--EEEEEccC--
Q 000545 1110 TLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ--GHLLIASGPK--IILHKWTG-- 1183 (1432)
Q Consensus 1110 ~~lvVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V~al~~~~--g~Ll~~vg~~--l~v~~~~~-- 1183 (1432)
.++++||- .| ||+.++.+.. .++..+.. +.+|+.|.-+. +.|++=.|++ |++|.+..
T Consensus 14 ~~lL~GTe---------~G-ly~~~~~~~~----~~~~kl~~---~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~ 76 (302)
T smart00036 14 KWLLVGTE---------EG-LYVLNISDQP----GTLEKLIG---RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALV 76 (302)
T ss_pred cEEEEEeC---------Cc-eEEEEcccCC----CCeEEecC---cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhh
Confidence 68999993 45 4444454321 12333332 35777777664 4566667777 99999941
Q ss_pred C--------e--eeeEE---eecCCCeeEEEEEEeCC-EEEEEeccccEEEEEEecccCEEEEee-----eccCCccEEE
Q 000545 1184 T--------E--LNGIA---FYDAPPLYVVSLNIVKN-FILLGDIHKSIYFLSWKEQGAQLNLLA-----KDFGSLDCFA 1244 (1432)
Q Consensus 1184 ~--------~--L~~~a---~~~~~~~~i~sl~~~~n-~IlvgD~~~Sv~ll~~~~~~~~l~~~a-----rD~~~~~vta 1244 (1432)
. + ..+.+ .-++.......+.-.+. ..++.-..+++.+++|...-.++..+- .+..+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~ 156 (302)
T smart00036 77 EKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFV 156 (302)
T ss_pred hhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceE
Confidence 0 0 11111 12221122222221121 345666778999997754333443332 1233333333
Q ss_pred EEEEE--cCCeeEEEEEec-CCcEEEE
Q 000545 1245 TEFLI--DGSTLSLVVSDE-QKNIQIF 1268 (1432)
Q Consensus 1245 ~~fl~--d~~~l~~l~~D~-~gNl~vl 1268 (1432)
.-... .+..+ ++++++ ..++.-+
T Consensus 157 ~~~~~~~~~~~l-cvG~~~~~~~~~~~ 182 (302)
T smart00036 157 ELVSSSFERPGI-CIGSDKGGGDVVQF 182 (302)
T ss_pred eeecccccceEE-EEEEcCCCCeEEEE
Confidence 22111 23465 788887 4555444
No 210
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.90 E-value=6.5e+02 Score=31.55 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=67.2
Q ss_pred cCeEEEEeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEecccCEEEEeeeccCCccE
Q 000545 1165 QGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDC 1242 (1432)
Q Consensus 1165 ~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~--~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v 1242 (1432)
.+.|.+|.|+.||+|.-...+....+.+. ..+|+++.-. |+.+.||-.-.-|.+. +.+..+-+.--+-.+.-.|
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iw--D~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIW--DVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEE--ehhhccccccccCCcCcee
Confidence 46788999999999999888766666553 2356676654 8899999998888875 5443333222222134446
Q ss_pred EEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1243 FATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1243 ta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.+.+. .... +..+.++|.|..+.+.
T Consensus 264 g~laW--~~~~--lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 264 GSLAW--NSSV--LSSGSRDGKILNHDVR 288 (484)
T ss_pred EEEec--cCce--EEEecCCCcEEEEEEe
Confidence 66653 3334 7888999999887653
No 211
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.81 E-value=1.3e+03 Score=27.57 Aligned_cols=67 Identities=21% Similarity=0.435 Sum_probs=44.8
Q ss_pred EEEEEEeCCcEEEEEecCCCceEEeecCccccCCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCC
Q 000545 670 YVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQ 749 (1432)
Q Consensus 670 ~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (1432)
++...-.|+.|.+..+....+.+.+.. -++.|..+++. |
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~g------hdnwVr~~af~----p------------------------------- 344 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVG------HDNWVRGVAFS----P------------------------------- 344 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEec------ccceeeeeEEc----C-------------------------------
Confidence 444455677888877655444444332 36777777651 1
Q ss_pred CcEEEEEEecCCeEEEEECCCCceeEEe
Q 000545 750 GDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1432)
Q Consensus 750 ~~~~l~v~~~~g~l~I~sLp~~~~v~~~ 777 (1432)
...|++-|.+|++|+||++...+|....
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeecc
Confidence 1339999999999999999998876543
No 212
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=23.48 E-value=1.3e+03 Score=27.28 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=80.8
Q ss_pred CceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeec-CCCCCccEEEEE-EEeecCceEEEc--ccc
Q 000545 1090 ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRN-ADNPQNLVTEVY-SKELKGAISALA--SLQ 1165 (1432)
Q Consensus 1090 E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~~-~~~~~~~l~~v~-~~~~~g~V~al~--~~~ 1165 (1432)
+.+++..++.|.. .-++|..|= +-.|.+|++..- .+-+.. -.+.+ +.-++|.+.+++ +.+
T Consensus 156 de~taAhsL~Fs~-----DGeqlfaGy----------krcirvFdt~RpGr~c~vy-~t~~~~k~gq~giisc~a~sP~~ 219 (406)
T KOG2919|consen 156 DEYTAAHSLQFSP-----DGEQLFAGY----------KRCIRVFDTSRPGRDCPVY-TTVTKGKFGQKGIISCFAFSPMD 219 (406)
T ss_pred HhhhhheeEEecC-----CCCeEeecc----------cceEEEeeccCCCCCCcch-hhhhcccccccceeeeeeccCCC
Confidence 4455555566742 346666663 667899998641 111111 11111 334566666554 344
Q ss_pred Ce-EEE-EeCCeEEEEEccCCeeeeEEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEeccc-----CEEEEeeec
Q 000545 1166 GH-LLI-ASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQG-----AQLNLLAKD 1236 (1432)
Q Consensus 1166 g~-Ll~-~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~ll~~~~~~-----~~l~~~arD 1236 (1432)
-+ +.+ +-|+.+-||.+.+.+.+..-+- . ..-|+.|.- .||++++| ++++=-++.|+... ..|.---.|
T Consensus 220 ~~~~a~gsY~q~~giy~~~~~~pl~llgg-h-~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~~pv~~L~rhv~~ 296 (406)
T KOG2919|consen 220 SKTLAVGSYGQRVGIYNDDGRRPLQLLGG-H-GGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSRDPVYALERHVGD 296 (406)
T ss_pred CcceeeecccceeeeEecCCCCceeeecc-c-CCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhccchhhhhhhhccC
Confidence 43 333 3468999999988764333221 1 334555554 34544443 33344444443211 122222223
Q ss_pred cCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeC
Q 000545 1237 FGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1237 ~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.+.|=.+..+ .+++- +..+|.+|-+.+++..
T Consensus 297 TNQRI~FDld--~~~~~--LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 297 TNQRILFDLD--PKGEI--LASGDTDGSVRVWDLK 327 (406)
T ss_pred ccceEEEecC--CCCce--eeccCCCccEEEEecC
Confidence 4454333433 23333 6778899999998753
No 213
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=23.47 E-value=78 Score=25.25 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=24.7
Q ss_pred eHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 000545 1389 DCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLA 1426 (1432)
Q Consensus 1389 DGDlle~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~ 1426 (1432)
|-.+|..+..=+..--.+||+.+|++...+.+.+..|+
T Consensus 5 D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 5 DRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 33444444333444457899999999999999888774
No 214
>PLN02193 nitrile-specifier protein
Probab=23.34 E-value=1.5e+03 Score=28.23 Aligned_cols=97 Identities=6% Similarity=0.011 Sum_probs=49.1
Q ss_pred ccccCeEEEEeC-------CeEEEEEccCCeeeeEEeec-C-CCeeEEEEEEeCCEEE-EEecc--ccEEEEEEecccCE
Q 000545 1162 ASLQGHLLIASG-------PKIILHKWTGTELNGIAFYD-A-PPLYVVSLNIVKNFIL-LGDIH--KSIYFLSWKEQGAQ 1229 (1432)
Q Consensus 1162 ~~~~g~Ll~~vg-------~~l~v~~~~~~~L~~~a~~~-~-~~~~i~sl~~~~n~Il-vgD~~--~Sv~ll~~~~~~~~ 1229 (1432)
+.++++|++.-| ..+..|++..+++..++... . .+-.-..+.+.++.|+ +|=.. ..-.+..|+.+.++
T Consensus 275 ~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 275 AADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE
Confidence 345566554433 23566776666655433211 1 0111223344555444 33111 11235667888877
Q ss_pred EEEeee---ccCCccEEEEEEEEcCCeeEEEEEe
Q 000545 1230 LNLLAK---DFGSLDCFATEFLIDGSTLSLVVSD 1260 (1432)
Q Consensus 1230 l~~~ar---D~~~~~vta~~fl~d~~~l~~l~~D 1260 (1432)
-..+.. -+.+|...++. .++ +.|+++++.
T Consensus 355 W~~~~~~g~~P~~R~~~~~~-~~~-~~iyv~GG~ 386 (470)
T PLN02193 355 WTQVETFGVRPSERSVFASA-AVG-KHIVIFGGE 386 (470)
T ss_pred EEEeccCCCCCCCcceeEEE-EEC-CEEEEECCc
Confidence 766653 35677766665 344 577777774
No 215
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=23.29 E-value=4e+02 Score=32.46 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=49.1
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilvg-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
..|++|++...+......... ..........++.|++. +......++.++...++...+.... ...+...|..|++
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~s~dg~ 290 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP--GIDTEPSWSPDGK 290 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC--CCCCCEEECCCCC
Confidence 468888887655444443333 22223344456666543 4333445555666555555554332 1223445555777
Q ss_pred eeEEEEEecCCcEEEEeeC
Q 000545 1253 TLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1253 ~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.| ++++|+.|+..++.++
T Consensus 291 ~l-~~~s~~~g~~~iy~~d 308 (417)
T TIGR02800 291 SI-AFTSDRGGSPQIYMMD 308 (417)
T ss_pred EE-EEEECCCCCceEEEEE
Confidence 76 4567777754444443
No 216
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=23.27 E-value=1.2e+03 Score=27.15 Aligned_cols=110 Identities=10% Similarity=-0.050 Sum_probs=53.8
Q ss_pred ccccCeEEEEeC-------CeEEEEEccCCee----eeEEeecCCCeeEEEEEEeCCEEE-EEecc---ccEEEEEEecc
Q 000545 1162 ASLQGHLLIASG-------PKIILHKWTGTEL----NGIAFYDAPPLYVVSLNIVKNFIL-LGDIH---KSIYFLSWKEQ 1226 (1432)
Q Consensus 1162 ~~~~g~Ll~~vg-------~~l~v~~~~~~~L----~~~a~~~~~~~~i~sl~~~~n~Il-vgD~~---~Sv~ll~~~~~ 1226 (1432)
+.++++|++.-| +.+..|++..++. ...+-+.. +..-.+..+.++.|+ +|-.. ..=.+..|+..
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~-~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF-TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc-CccCceEEEECCEEEEEeCcCCCccCceEEEEcCC
Confidence 345666554444 3566677765543 22222222 222234555666554 44431 12346778887
Q ss_pred cCEEEEeeecc-CCccEEEEEEEEcCCeeEEEEEecCCc-EEEEeeCCCC
Q 000545 1227 GAQLNLLAKDF-GSLDCFATEFLIDGSTLSLVVSDEQKN-IQIFYYAPKM 1274 (1432)
Q Consensus 1227 ~~~l~~~arD~-~~~~vta~~fl~d~~~l~~l~~D~~gN-l~vl~~~p~~ 1274 (1432)
.++-..++.=. .+|.-.++. .-++.|+++++-.... .-++.|+|..
T Consensus 148 ~~~W~~~~~~p~~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 148 TQEWFELPDFPGEPRVQPVCV--KLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CCCeeECCCCCCCCCCcceEE--EECCEEEEEcCCCCccccceEEEecCC
Confidence 77766665322 244433333 3346787777643211 1234556553
No 217
>PRK04792 tolB translocation protein TolB; Provisional
Probab=23.18 E-value=1.1e+03 Score=29.28 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=47.7
Q ss_pred eEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEE-EEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCe
Q 000545 1175 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFIL-LGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGST 1253 (1432)
Q Consensus 1175 ~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Il-vgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~ 1253 (1432)
.|++++++.+++.+...... ...-.+....+.+|+ ..|.-....++.++.+.++...+..+ ..+.....|-.|++.
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 287 EIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCE
Confidence 58888887766555433221 001112333455554 44555556777777665655544322 222233455567777
Q ss_pred eEEEEEecCCcEEEEeeCC
Q 000545 1254 LSLVVSDEQKNIQIFYYAP 1272 (1432)
Q Consensus 1254 l~~l~~D~~gNl~vl~~~p 1272 (1432)
|++ .+...+...++.++.
T Consensus 364 l~~-~~~~~g~~~I~~~dl 381 (448)
T PRK04792 364 MIM-VNRTNGKFNIARQDL 381 (448)
T ss_pred EEE-EEecCCceEEEEEEC
Confidence 643 444455444444443
No 218
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=22.66 E-value=2.7e+02 Score=32.11 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=59.9
Q ss_pred CeEEEEEccCCeeee--EEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEee--eccCCccEEEEEEEE
Q 000545 1174 PKIILHKWTGTELNG--IAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLA--KDFGSLDCFATEFLI 1249 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~--~a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~a--rD~~~~~vta~~fl~ 1249 (1432)
++|.+|++.+....+ +-|.++.|....+-+.-|+|++||.-.--+.++ +-+..+-..-| +|-+.-.|+++.+ -
T Consensus 194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY--dv~T~QcfvsanPd~qht~ai~~V~Y-s 270 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY--DVNTYQCFVSANPDDQHTGAITQVRY-S 270 (430)
T ss_pred CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE--eccceeEeeecCcccccccceeEEEe-c
Confidence 678899997642211 223454344444555568999999988888886 43344433322 3455667888886 3
Q ss_pred cCCeeEEEEEecCCcEEEEe
Q 000545 1250 DGSTLSLVVSDEQKNIQIFY 1269 (1432)
Q Consensus 1250 d~~~l~~l~~D~~gNl~vl~ 1269 (1432)
....| ++.+-++|.|.++.
T Consensus 271 ~t~~l-YvTaSkDG~IklwD 289 (430)
T KOG0640|consen 271 STGSL-YVTASKDGAIKLWD 289 (430)
T ss_pred CCccE-EEEeccCCcEEeec
Confidence 33456 78899999999985
No 219
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=22.23 E-value=1.3e+03 Score=26.91 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=79.1
Q ss_pred ceEEEEEeeeecCCCccc---ceeEEEEEEeecCCCCCccEEEEEEEeecCce---EEEccccCe---EEEEeCCeEEEE
Q 000545 1109 ETLLAIGTAYVQGEDVAA---RGRVLLFSTGRNADNPQNLVTEVYSKELKGAI---SALASLQGH---LLIASGPKIILH 1179 (1432)
Q Consensus 1109 ~~~lvVGT~~~~~e~~~~---~Gri~vf~i~~~~~~~~~~l~~v~~~~~~g~V---~al~~~~g~---Ll~~vg~~l~v~ 1179 (1432)
.+.|++||-.-...+.|+ .|++++|.+.+....| +..+..++..+.- -++-+..|- +.|-.-..|.+|
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~---l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~ 100 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP---LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLY 100 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccccCc---cceeeeecccccceeeeeeccCCccceeeeccccceEEEE
Confidence 359999997554335444 6999999998643322 3333333333221 122223333 333334467777
Q ss_pred EccCC----eeeeEEeecCC-C-eeEEEEEEeCCEEEEEeccccEEEEEEecccCEEEEeee---ccCCccEEEEEEEEc
Q 000545 1180 KWTGT----ELNGIAFYDAP-P-LYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAK---DFGSLDCFATEFLID 1250 (1432)
Q Consensus 1180 ~~~~~----~L~~~a~~~~~-~-~~i~sl~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~ar---D~~~~~vta~~fl~d 1250 (1432)
+.+.. .|.+....+.. . ..-..+...+.-|+++|..-++..+.+. ...|.-++. .--..|+.... ..
T Consensus 101 r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~--~~ 176 (339)
T KOG0280|consen 101 RNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFS--DK 176 (339)
T ss_pred eeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecc--cC
Confidence 77642 24444433320 1 1223455667889999999999966443 223322111 11123544443 33
Q ss_pred CCeeEEEEEecCCcEEEEee
Q 000545 1251 GSTLSLVVSDEQKNIQIFYY 1270 (1432)
Q Consensus 1251 ~~~l~~l~~D~~gNl~vl~~ 1270 (1432)
+..| +..+-.+|-|..+..
T Consensus 177 ~pnl-vytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 177 EPNL-VYTGGDDGSLSCWDI 195 (339)
T ss_pred CCce-EEecCCCceEEEEEe
Confidence 3444 344455667766654
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=22.18 E-value=1.1e+03 Score=32.61 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred EEEEeCCCCeEEEEEeecccccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCC---CCCceeeee
Q 000545 1007 QITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRA---GGPWQTRAT 1083 (1432)
Q Consensus 1007 ~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~dp~~~---~~~~~~~~~ 1083 (1432)
|++-.++..-|.|-++ +.+.||+-+-... ..+.....+
T Consensus 1053 k~a~s~~~~s~FvsgS---------------------------------------~DGtVKvW~~~k~~~~~~s~rS~lt 1093 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGS---------------------------------------DDGTVKVWNLRKLEGEGGSARSELT 1093 (1431)
T ss_pred ceeecCCCCceEEEec---------------------------------------CCceEEEeeehhhhcCcceeeeeEE
Q ss_pred EECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEee-cCCCCCccEEEEEEEeecCceEEEc
Q 000545 1084 IPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR-NADNPQNLVTEVYSKELKGAISALA 1162 (1432)
Q Consensus 1084 ~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~-~~~~~~~~l~~v~~~~~~g~V~al~ 1162 (1432)
|.. .+-.+.++..| .....+|||| ..|.+.+++|+. +..+-.-.--.+-..+-.|+|..|.
T Consensus 1094 ys~-~~sr~~~vt~~--------~~~~~~Av~t---------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~ 1155 (1431)
T KOG1240|consen 1094 YSP-EGSRVEKVTMC--------GNGDQFAVST---------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH 1155 (1431)
T ss_pred Eec-cCCceEEEEec--------cCCCeEEEEc---------CCCeEEEEEccccccccceeeeeecccccCCCceEEee
Q ss_pred cc-----c-CeEEEEeCCeEEEEEccCCe-eeeEEeecCCCeeEEEEEEe--CCEEEEE
Q 000545 1163 SL-----Q-GHLLIASGPKIILHKWTGTE-LNGIAFYDAPPLYVVSLNIV--KNFILLG 1212 (1432)
Q Consensus 1163 ~~-----~-g~Ll~~vg~~l~v~~~~~~~-L~~~a~~~~~~~~i~sl~~~--~n~Ilvg 1212 (1432)
.| . .-+.+.....|..|+..... +-+.-.--- +.+|+++.+. ++..++|
T Consensus 1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred cccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecCCceEEEEe
No 221
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=22.16 E-value=9.5e+02 Score=31.00 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=66.1
Q ss_pred ecCceEEEccccC-eEEEEeC-CeEEEEEccCCeeeeEEeecCCCeeEEEEE-EeCCEEEEEecccc-EEEEEEecccCE
Q 000545 1154 LKGAISALASLQG-HLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLN-IVKNFILLGDIHKS-IYFLSWKEQGAQ 1229 (1432)
Q Consensus 1154 ~~g~V~al~~~~g-~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~-~~~n~IlvgD~~~S-v~ll~~~~~~~~ 1229 (1432)
....|.+|+.+.+ .++.|.| .-|+.|++.+.-|++.--. ..|+-+|+ ...+.++|..--++ +-+ |+.+ .
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlri--W~~~--e 250 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH---TNFVYSISMALSDGLIVSTGEDRTLRI--WKKD--E 250 (745)
T ss_pred chhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeecc---ceEEEEEEecCCCCeEEEecCCceEEE--eecC--c
Confidence 5678999999877 6776666 5778899977655543222 45777777 45556666544433 322 3322 1
Q ss_pred EEEeeeccCCc-cEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCC
Q 000545 1230 LNLLAKDFGSL-DCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPK 1273 (1432)
Q Consensus 1230 l~~~arD~~~~-~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~ 1273 (1432)
+...- ..|- .+-++.++.+++ |+++-.+|-++||..++.
T Consensus 251 ~~q~I--~lPttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 251 CVQVI--TLPTTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eEEEE--ecCccceEEEEEeeCCC---EEEeccCceEEEEEeccc
Confidence 11111 1222 455677655654 788999999999987643
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=21.86 E-value=1.5e+03 Score=27.74 Aligned_cols=81 Identities=6% Similarity=-0.051 Sum_probs=41.6
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEE-EEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFI-LLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~I-lvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
..|++|++..+++.+...... ...-......+++| ++.|-.....++.++.+......+.... ....+..|..|++
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~--~~~~~~~~SpDG~ 343 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG--SQNQDADVSSDGK 343 (429)
T ss_pred cEEEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC--CCccCEEECCCCC
Confidence 368888887766554432222 11111233346655 4555544556776776555544443221 2234455556777
Q ss_pred eeEEE
Q 000545 1253 TLSLV 1257 (1432)
Q Consensus 1253 ~l~~l 1257 (1432)
.|.+.
T Consensus 344 ~Ia~~ 348 (429)
T PRK03629 344 FMVMV 348 (429)
T ss_pred EEEEE
Confidence 76443
No 223
>PRK00178 tolB translocation protein TolB; Provisional
Probab=21.08 E-value=9.1e+02 Score=29.60 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=51.2
Q ss_pred CeEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCC
Q 000545 1174 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1252 (1432)
Q Consensus 1174 ~~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Ilvg-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1252 (1432)
..|++|++...+..+....+. .......+..+++|++. +-.....++.++.+.+++..+.++.. ..+...|..|++
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~--~~~~~~~spDg~ 299 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA--IDTEPFWGKDGR 299 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC--CcCCeEECCCCC
Confidence 468888887655444333332 11112334456666643 33333456666766666666655332 234455656777
Q ss_pred eeEEEEEecCCcEEEEeeC
Q 000545 1253 TLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1253 ~l~~l~~D~~gNl~vl~~~ 1271 (1432)
.| ++.+|+.|+-.++.++
T Consensus 300 ~i-~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 300 TL-YFTSDRGGKPQIYKVN 317 (430)
T ss_pred EE-EEEECCCCCceEEEEE
Confidence 77 4567887765555544
No 224
>PHA02790 Kelch-like protein; Provisional
Probab=20.94 E-value=5.3e+02 Score=32.44 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=56.5
Q ss_pred eEEEEEccCCeeeeEEeecCCCeeEEEEEEeCCEEE-EEec--cccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcC
Q 000545 1175 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFIL-LGDI--HKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG 1251 (1432)
Q Consensus 1175 ~l~v~~~~~~~L~~~a~~~~~~~~i~sl~~~~n~Il-vgD~--~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~ 1251 (1432)
.+..|+...+++...+.... +-.-.++.+.++.|+ +|-. ..+ +-+|++..++-..++.=+.+|.-.++. .-+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~~~~~iYviGG~~~~~s--ve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNS-PRLYASGVPANNKLYVVGGLPNPTS--VERWFHGDAAWVNMPSLLKPRCNPAVA--SIN 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCc-hhhcceEEEECCEEEEECCcCCCCc--eEEEECCCCeEEECCCCCCCCcccEEE--EEC
Confidence 56678877777766665443 222233445666554 5532 344 467888888888888766777655554 234
Q ss_pred CeeEEEEEecCCcEEEEeeCCCC
Q 000545 1252 STLSLVVSDEQKNIQIFYYAPKM 1274 (1432)
Q Consensus 1252 ~~l~~l~~D~~gNl~vl~~~p~~ 1274 (1432)
+.|+++|+-....-.+..|+|..
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCC
Confidence 68888877432222345567753
No 225
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=20.69 E-value=1.3e+03 Score=26.49 Aligned_cols=260 Identities=13% Similarity=0.146 Sum_probs=138.2
Q ss_pred cCeEEEEEcCCCCccCCCcceEEEee---CCCcccEEEEeCCCCeEEEEEeecccccccccccccccccccccccCCCCC
Q 000545 975 QGILKICQLPSGSTYDNYWPVQKVIP---LKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLS 1051 (1432)
Q Consensus 975 ~~~L~I~~l~~~~~~d~~~~ir~~i~---L~~tpr~I~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 1051 (1432)
+..+||-..... ..|..+. +- -.++.|+|++.|..+.++.+.-. .
T Consensus 36 Dk~vriw~~~~~----~s~~ck~-vld~~hkrsVRsvAwsp~g~~La~aSFD---------------~------------ 83 (312)
T KOG0645|consen 36 DKAVRIWSTSSG----DSWTCKT-VLDDGHKRSVRSVAWSPHGRYLASASFD---------------A------------ 83 (312)
T ss_pred CceEEEEecCCC----CcEEEEE-eccccchheeeeeeecCCCcEEEEeecc---------------c------------
Confidence 445666555531 1266665 32 23689999999999955554211 0
Q ss_pred ccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccce-eE
Q 000545 1052 SVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARG-RV 1130 (1432)
Q Consensus 1052 ~~~~~~~~~~~~~~v~l~dp~~~~~~~~~~~~~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~G-ri 1130 (1432)
.+-+.... +..|+.++.+|=.+||. +.|.+. ....||+-.+ |+ .+
T Consensus 84 -------------t~~Iw~k~--~~efecv~~lEGHEnEV----K~Vaws-----~sG~~LATCS----------RDKSV 129 (312)
T KOG0645|consen 84 -------------TVVIWKKE--DGEFECVATLEGHENEV----KCVAWS-----ASGNYLATCS----------RDKSV 129 (312)
T ss_pred -------------eEEEeecC--CCceeEEeeeeccccce----eEEEEc-----CCCCEEEEee----------CCCeE
Confidence 11122111 24677777777677773 556664 2347888665 43 46
Q ss_pred EEEEEeecCCCCCccE-E--EEEEEeecCceEEEccccCeEEEE-eCCeEEEEEcc-CCeeeeEEeecCCCe-eEEEE--
Q 000545 1131 LLFSTGRNADNPQNLV-T--EVYSKELKGAISALASLQGHLLIA-SGPKIILHKWT-GTELNGIAFYDAPPL-YVVSL-- 1202 (1432)
Q Consensus 1131 ~vf~i~~~~~~~~~~l-~--~v~~~~~~g~V~al~~~~g~Ll~~-vg~~l~v~~~~-~~~L~~~a~~~~~~~-~i~sl-- 1202 (1432)
-++++.++. +... - .=|..++|+.+- .+-.+.|+.+ --++|.+|+-. +....-++.++. +. .|=++
T Consensus 130 WiWe~dedd---Efec~aVL~~HtqDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F 203 (312)
T KOG0645|consen 130 WIWEIDEDD---EFECIAVLQEHTQDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG-HENTVWSLAF 203 (312)
T ss_pred EEEEecCCC---cEEEEeeeccccccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC-ccceEEEEEe
Confidence 778887431 1211 1 123344444332 2334555533 34899999887 666777777766 33 33344
Q ss_pred EEeCCEEEEEeccccEEEEEEecccCEEEEeeeccCCccEEEEEEEEcCCeeEEEEEecCCcEEEEeeCCCCCCCccCce
Q 000545 1203 NIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQK 1282 (1432)
Q Consensus 1203 ~~~~n~IlvgD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~l~~D~~gNl~vl~~~p~~~~s~~~~k 1282 (1432)
...|++++.++=-.-|.+.++.. ---..+.+.++.+.. +.+. |..+=.++-|.+|+-. ..|+...=..
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~-------~~~~~~sr~~Y~v~W--~~~~--IaS~ggD~~i~lf~~s-~~~d~p~~~l 271 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYT-------DLSGMHSRALYDVPW--DNGV--IASGGGDDAIRLFKES-DSPDEPSWNL 271 (312)
T ss_pred cCCCceEEEecCCcceEeeeecc-------CcchhcccceEeeee--cccc--eEeccCCCEEEEEEec-CCCCCchHHH
Confidence 33466877776555555554320 011345566777764 3344 5555667788888754 2222111111
Q ss_pred EEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEecCCcEEE
Q 000545 1283 LLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGC 1336 (1432)
Q Consensus 1283 L~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~il~~t~~GsIg~ 1336 (1432)
+..+..-| +.-||+.+ ..|. .+..++.++-+|.+-.
T Consensus 272 ~~~~~~aH-e~dVNsV~---w~p~--------------~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 272 LAKKEGAH-EVDVNSVQ---WNPK--------------VSNRLASGGDDGIVNF 307 (312)
T ss_pred HHhhhccc-ccccceEE---EcCC--------------CCCceeecCCCceEEE
Confidence 11122222 34667765 2331 1346777778876643
No 226
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=20.43 E-value=8.2e+02 Score=31.78 Aligned_cols=83 Identities=18% Similarity=0.300 Sum_probs=47.9
Q ss_pred EECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEee---cCCCCCc-cEEEEEEEe-ecCce
Q 000545 1084 IPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR---NADNPQN-LVTEVYSKE-LKGAI 1158 (1432)
Q Consensus 1084 ~~l~~~E~v~si~~v~l~~~~~~~~~~~lvVGT~~~~~e~~~~~Gri~vf~i~~---~~~~~~~-~l~~v~~~~-~~g~V 1158 (1432)
..|+..+.+..+-... +.+....++||- ..+|++|.--. -...|.. .++.+--.+ +..||
T Consensus 67 ~~f~~~~~I~dLDWts-----t~d~qsiLaVGf----------~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~I 131 (631)
T PF12234_consen 67 ESFSEDDPIRDLDWTS-----TPDGQSILAVGF----------PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPI 131 (631)
T ss_pred eeecCCCceeeceeee-----cCCCCEEEEEEc----------CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCc
Confidence 3456666665554322 345678889986 44555553311 0111211 233332233 34677
Q ss_pred EEEccc-cCeEEEEeCCeEEEEEc
Q 000545 1159 SALASL-QGHLLIASGPKIILHKW 1181 (1432)
Q Consensus 1159 ~al~~~-~g~Ll~~vg~~l~v~~~ 1181 (1432)
...+-. +|.|++|.|+.++||+=
T Consensus 132 gds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 132 GDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred cceeEecCCeEEEEeCCEEEEECC
Confidence 777765 67999999999999864
No 227
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.25 E-value=5.4e+02 Score=31.71 Aligned_cols=132 Identities=17% Similarity=0.286 Sum_probs=0.0
Q ss_pred eEEEeeecCCcEEEEEecCcEEEEcCCc-ceEEEeCCCCCCCCCCCCCCccEEEEEE--eCCE--EEEEEeCCcEEEEEe
Q 000545 611 TIAAGNLFGRRRVIQVFERGARILDGSY-MTQDLSFGPSNSESGSGSENSTVLSVSI--ADPY--VLLGMSDGSIRLLVG 685 (1432)
Q Consensus 611 Tl~ag~l~~~~~ivQVt~~~irli~~~~-~~~~~~~~~~~~~~~~~~~~~~I~~asi--~d~~--vll~~~~g~i~~l~~ 685 (1432)
||+=|.+ -+.+-|..-.=+++.+.+ ++..|.+ ..+.....|.+-.+ -|.| -+.++.||+-++.-+
T Consensus 415 tL~HGEv---VcAvtIS~~trhVyTgGkgcVKVWdi-------s~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG 484 (705)
T KOG0639|consen 415 TLAHGEV---VCAVTISNPTRHVYTGGKGCVKVWDI-------SQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG 484 (705)
T ss_pred hhccCcE---EEEEEecCCcceeEecCCCeEEEeec-------cCCCCCCccccccccCcccceeeeEecCCCceEEecc
Q ss_pred cCCCceE-EeecCccccCCCCceEEEEeec-cCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeE
Q 000545 686 DPSTCTV-SVQTPAAIESSKKPVSSCTLYH-DKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGAL 763 (1432)
Q Consensus 686 ~~~~~~l-~~~~~~~~~~~~~~i~~~~l~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l 763 (1432)
..++..+ .+..+..-...+-.-++.++|. +.+| ...+||-|++||.|
T Consensus 485 eastlsiWDLAapTprikaeltssapaCyALa~sp-------------------------------DakvcFsccsdGnI 533 (705)
T KOG0639|consen 485 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-------------------------------DAKVCFSCCSDGNI 533 (705)
T ss_pred ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-------------------------------ccceeeeeccCCcE
Q ss_pred EEEECCCCceeEEecccccc
Q 000545 764 EIFDVPNFNCVFTVDKFVSG 783 (1432)
Q Consensus 764 ~I~sLp~~~~v~~~~~~~~~ 783 (1432)
.||.|-+..+|.+..+-..|
T Consensus 534 ~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 534 AVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred EEEEcccceeeecccCCCCC
No 228
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.22 E-value=3.1e+02 Score=31.78 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=49.9
Q ss_pred eCceEEEEeCCCCEEEEEEEEcCeeeeeEEEEec-----CCCccccceEEecCCeEEEEeecCCeeEEEEeeC
Q 000545 373 QNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT-----NPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCG 440 (1432)
Q Consensus 373 ~~~~~Ll~~~~G~l~~l~l~~dg~~V~~l~i~~~-----~~~~~~s~l~~l~~g~lF~gS~~GDS~L~~~~~~ 440 (1432)
.+..+.|++|++.|..+. .+|+.+..|.+..- ..+|.|..++.-++|.||+-||-+ .+|+|.+.
T Consensus 244 ~~~LLVLS~ESr~l~Evd--~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn--lfy~F~~~ 312 (316)
T COG3204 244 TNSLLVLSDESRRLLEVD--LSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN--LFYRFTPQ 312 (316)
T ss_pred CCcEEEEecCCceEEEEe--cCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC--cceecccC
Confidence 345688889998885554 45777777887753 567889999999999999999975 57888764
No 229
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=20.08 E-value=1.4e+03 Score=26.72 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=33.8
Q ss_pred ceEEEEEecCeEEEEEcCCCCccCCCc---ceEEEeeC---CCcccEEEEeCCCCeEEEEE
Q 000545 967 HGFIYVTSQGILKICQLPSGSTYDNYW---PVQKVIPL---KATPHQITYFAEKNLYPLIV 1021 (1432)
Q Consensus 967 ~g~i~~~~~~~L~I~~l~~~~~~d~~~---~ir~~i~L---~~tpr~I~y~~~~~~~~v~~ 1021 (1432)
.-.+-++.+|..||-..+-....+..- -.-. +|| +..|.|+..+|+.+.+++..
T Consensus 291 ~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 291 TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-APLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred ceeEEEecCCcEEEeeccceEecCCCchHhhcCC-cchhhcCCCceEEEeCCCCcEEEeec
Confidence 345667777888887666443322211 1112 444 35799999999999998863
Done!