Query 000545
Match_columns 1432
No_of_seqs 215 out of 710
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 16:36:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000545.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_319-322//hhsearch_pdb/000545hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 1.0 1 1 1544.0 128.4 1088 1-1428 19-1157(1158)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 51.0 37.5 23 753-775 757-779 (1249)
3 1pgu_A Actin interacting prote 1.0 1 1 48.7 51.0 133 1127-1271 466-613 (615)
4 3v7d_B Cell division control p 1.0 1 1 46.0 43.2 110 661-855 125-234 (464)
5 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 45.2 42.6 112 660-855 659-772 (1249)
6 3mkq_A Coatomer beta'-subunit; 1.0 1 1 41.1 41.4 90 1109-1225 404-504 (814)
7 1gxr_A ESG1, transducin-like e 1.0 1 1 40.8 33.3 16 839-854 110-125 (337)
8 1pgu_A Actin interacting prote 1.0 1 1 40.4 54.6 180 1109-1338 418-611 (615)
9 3zwl_B Eukaryotic translation 1.0 1 1 39.8 33.3 24 753-776 88-111 (369)
10 1gxr_A ESG1, transducin-like e 1.0 1 1 39.6 34.5 13 1256-1268 321-333 (337)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=1.00 E-value=1 Score=1544.00 Aligned_cols=1088 Identities=19% Similarity=0.309 Sum_probs=882.1
Q ss_pred CCCCEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCCC
Q ss_conf 96401112358960103589875348888899975433221234688778999988299982885999999980268733
Q 000545 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1432)
Q Consensus 1 ~~~~~~~~~~~pT~V~~s~~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~~~LeIy~i~~~~~g~~~ 80 (1432)
|+|+|+.|+||||+|+||+.|||++++.+ ||||||+|+||||++.+ ++
T Consensus 19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~---------------------------~Lvvak~~~Lel~~~~~--~~--- 66 (1158)
T 3ei3_A 19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDL---------------------------NLLIAKNTRLEIYVVTA--EG--- 66 (1158)
T ss_dssp CCCEEEEEEECCCSCCEEEEECSSCSSCC---------------------------EEEEEETTEEEEEEEET--TE---
T ss_pred CCEEEEEEEECCCHHHEEEEEECCCCCCC---------------------------EEEEECCCEEEEEEECC--CC---
T ss_conf 10899998668985658999985899965---------------------------89994399999998865--65---
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCEEEEEEE
Q ss_conf 45776332231135665223999989984336869799851899998998499997365419999993999982479754
Q 000545 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH 160 (1432)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Lli~~~~~klsil~~d~~~~~l~t~Slh 160 (1432)
|++++++++||+|++|+++|+.++ ++|+|+|+|+++|+++|+||++++.+.+++.|
T Consensus 67 --------------------L~~v~~~~l~G~I~~l~~~r~~g~----~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~ 122 (1158)
T 3ei3_A 67 --------------------LRPVKEVGMYGKIAVMELFRPKGE----SKDLLFILTAKYNACILEYKQSGESIDIITRA 122 (1158)
T ss_dssp --------------------EEEEEEEECSSCEEEEEEECCTTC----SSCEEEEEETTCEEEEEEEEC-CCCCEEEEEE
T ss_pred --------------------EEEEEEEECCCEEEEEEEECCCCC----CCEEEEEEECCCEEEEEEECCCCCCEEEEEEE
T ss_conf --------------------699999983337778888868999----84099999177609999985888815689996
Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCC
Q ss_conf 30284200135797655689849988999689999608539999284489999888888899998664100208998356
Q 000545 161 CFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240 (1432)
Q Consensus 161 ~~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~~~~~L~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~l~l~~ 240 (1432)
+ .+. ..+.|++ ..+|++++|||.|||+++++|++.++|+|+.+.+.+ ..++.+++.+
T Consensus 123 ~-~~~---~~~~~r~-~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~------------------l~~~~~~l~~ 179 (1158)
T 3ei3_A 123 H-GNV---QDRIGRP-SETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKE------------------LKAFNIRLEE 179 (1158)
T ss_dssp E-EEC---CCSSCCB-CTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTT------------------CCCEEEECSC
T ss_pred C-CCC---CCCCCCC-CCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCCC------------------CCCCCCCCCC
T ss_conf 2-445---5675645-777887999688899999931598999994388666------------------6220215654
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCC-CCEEEEECCCCCCCCEEEEECCCCC
Q ss_conf 788841368630599975299996348776662100142159999998403300-2224574157845436798428988
Q 000545 241 LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQ-HPLIWSAMNLPHDAYKLLAVPSPIG 319 (1432)
Q Consensus 241 ldi~~v~d~~FL~gy~~PtlaiL~~~~~tw~gr~~~~~~t~~~~~~sLd~~~~~-~~~i~s~~~Lp~~~~~LipvP~p~g 319 (1432)
+ +|+||+|||||+|||||+||++.. || .+..|+||+..+. .+.+|+..+||++|++|||||+|+|
T Consensus 180 ~---~v~d~~fL~g~~~P~~A~Ly~d~~---~~--------~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~g 245 (1158)
T 3ei3_A 180 L---HVIDVKFLYGCQAPTICFVYQDPQ---GR--------HVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFG 245 (1158)
T ss_dssp C---CEEEEEECSSCSSCEEEEEEEETT---EE--------EEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTC
T ss_pred C---EEEEEEEECCCCCCEEEEEEECCC---CC--------EEEEEEEECCCCEEEECCCCCCCCCCCCCEEEECCCCCC
T ss_conf 3---289999965999868999998899---98--------999999976777054424412459999788999788885
Q ss_pred EEEEEECCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECEEEEEE-ECCEEEEEECCCCEEEEEEEECCE--
Q ss_conf 49999237289973586205773677766888766678885267403048994-276699992899789999997690--
Q 000545 320 GVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWL-QNDVALLSTKTGDLVLLTVVYDGR-- 396 (1432)
Q Consensus 320 GvLvig~n~i~y~~~~~~~~~~~n~~~~~~~~~~~~p~~~~~~~ld~~~~~~~-~~~~~Ll~~~~G~l~~l~l~~dg~-- 396 (1432)
|+||||+|.|+|+|+.+...++. +..+++ .+ .|.+.+. ...++||++++|+||+|+|..|++
T Consensus 246 Gvlv~g~n~i~y~~~~~~~~~~~----------p~~~~~----~i-~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~ 310 (1158)
T 3ei3_A 246 GAIIIGQESITYHNGDKYLAIAP----------PIIKQS----TI-VCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMD 310 (1158)
T ss_dssp CEEEECSSCEEEEETTEEEEECC----------GGGGGS----CE-EEEEECSTTSSEEEEEETTCEEEEEEEEEEC---
T ss_pred EEEEEECCEEEEECCCCCEEEEC----------CCCCCC----EE-EEEEEEECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 69999788899991997558726----------645786----58-9999993699789999599999999999717756
Q ss_pred ---EEEEEEEEECCCCCCCCCEEEECCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf ---56667987459974442147863882999821188369998527886435779854347765689510000389960
Q 000545 397 ---VVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473 (1432)
Q Consensus 397 ---~v~~l~i~~~~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1432)
.|++++++|+|++++|+||+++++|++|+||++|||+||||...+ +
T Consensus 311 ~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~----------~--------------------- 359 (1158)
T 3ei3_A 311 GTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDS----------N--------------------- 359 (1158)
T ss_dssp --CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSC----------C---------------------
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCEEEEEECCC----------C---------------------
T ss_conf 752589989998588457518999889879999962783899983389----------9---------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEE--------
Q ss_conf 1101457421123478788865554205799963002468864221121236688----7557888997199--------
Q 000545 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYEL-------- 541 (1432)
Q Consensus 474 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~D~l~NigPI~D~~vg~~~~~~~----~~sG~g~~g~L~~-------- 541 (1432)
+ ...+++++|+++|||||.||++++....+. +|||.|++|+|++
T Consensus 360 ---~---------------------~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~ 415 (1158)
T 3ei3_A 360 ---E---------------------QGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH 415 (1158)
T ss_dssp ---T---------------------TSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred ---C---------------------CCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCEE
T ss_conf ---8---------------------6451774732157677116999716778987099998769997589982488779
Q ss_pred ----EECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE-CCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf ----955997779899850899998876434536867523999962563269990-362322314556112566099843
Q 000545 542 ----VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLET-ADLLTEVTESVDYFVQGRTIAAGN 616 (1432)
Q Consensus 542 ----~~l~g~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~-g~~~eev~~~~gF~~~~~TI~ag~ 616 (1432)
.+|||++++|+++.. .++++|+|||+||.++|+||++ ++++||++ ..||.++++||+|++
T Consensus 416 ~~~~~~l~gv~~iWtl~~~--------------~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~-~~gf~~~~~TL~~~~ 480 (1158)
T 3ei3_A 416 EHASIDLPGIKGLWPLRSD--------------PNRETDDTLVLSFVGQTRVLMLNGEEVEETE-LMGFVDDQQTFFCGN 480 (1158)
T ss_dssp EEEEECCCSCCEEEEECCC--------------SSCSSCCEEEEEETTEEEEEEEETTEEEEEC-CTTCCSSSCEEEEEE
T ss_pred EEEEECCCCCCEEEEEEEC--------------CCCCCCCEEEEECCCCEEEEEEECCCCCCCC-CCCCCCCCCCEEEEE
T ss_conf 9896059985579997606--------------7777788999978897699997077545210-155438898199999
Q ss_pred ECCCCEEEEEECCCEEEECCCC--CEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 0698489999269299980883--13787389999998999999649999980878999992892999995189736985
Q 000545 617 LFGRRRVIQVFERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSV 694 (1432)
Q Consensus 617 l~~~~~ivQVt~~~irl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Iv~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~ 694 (1432)
+ ++++|||||+++||+++.+. .+++|.+| .+..|++|+++++||+++ +++++++|+.+.. .+..
T Consensus 481 l-~~~~ivQVt~~~Irli~~~~~~~~~~w~~p----------~~~~I~~As~n~~~vvva-~g~~l~~fel~~~--~L~~ 546 (1158)
T 3ei3_A 481 V-AHQQLIQITSASVRLVSQEPKALVSEWKEP----------QAKNISVASCNSSQVVVA-VGRALYYLQIHPQ--ELRQ 546 (1158)
T ss_dssp E-TTTEEEEEESSCEEEEESSSCCEEEEECCT----------TCCCCCEEEECSSEEEEE-ETTEEEEEEEETT--EEEE
T ss_pred C-CCCEEEEEECCEEEEEECCCCEEEEEEECC----------CCCEEEEEEECCCEEEEE-ECCEEEEEEEECC--CEEE
T ss_conf 5-898599990697999978888088999889----------998899999579879999-7998999996389--4246
Q ss_pred ECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-EECCCEEEEEECCCCCE
Q ss_conf 24832137887557877611489985223445654445775433469999999878599999-94198599998899805
Q 000545 695 QTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVV-CYESGALEIFDVPNFNC 773 (1432)
Q Consensus 695 ~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v-~~~~g~l~I~sLp~~~~ 773 (1432)
.....+ +.+|+|+++.... ++...+. +++| +|.|++++||+||+++.
T Consensus 547 ~~~~~l---~~evscl~i~~~~----------------------------~~~~~s~-~~aVg~~~d~tv~I~sL~~l~~ 594 (1158)
T 3ei3_A 547 ISHTEM---EHEVACLDITPLG----------------------------DSNGLSP-LCAIGLWTDISARILKLPSFEL 594 (1158)
T ss_dssp EEEEEC---SSCEEEEECCCCS----------------------------SSTTCCS-EEEEEETTTTEEEEEETTTCCE
T ss_pred ECCCCC---CCCEEEEEEECCC----------------------------CCCCCCC-EEEEEECCCCEEEEEECCCCCE
T ss_conf 123578---9815899920688----------------------------8754466-7999988898899998799876
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCEEEEE
Q ss_conf 68842656664211111000013343100157875477788645456541899996204688884099999609959999
Q 000545 774 VFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCY 853 (1432)
Q Consensus 774 v~~~~~~~~~~~~l~~~~~~~~~~~s~q~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~lG~~~~~~~L~vgl~~G~l~~y 853 (1432)
+.... ++. +..+.++++..+ .+.+||+|||+||.+++|
T Consensus 595 ~~~~~------------------------L~~---------------~~~p~si~l~~~---~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 595 LHKEM------------------------LGG---------------EIIPRSILMTTF---ESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp EEEEE------------------------CCS---------------SCCEEEEEEEEE---TTEEEEEEEETTSEEEEE
T ss_pred EEEEE------------------------CCC---------------CCCCCEEEEEEE---CCCCEEEEEECCCEEEEE
T ss_conf 89998------------------------899---------------998847999983---897689999079869999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE-CCCCCEEEEEECCC
Q ss_conf 97531799999889999764344433443324443136980268866898878898853359940-35882499990897
Q 000545 854 QAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFK-NISGHQGFFLSGSR 932 (1432)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rF~k~~~~~~~~~~~~~~~g~~~i~~~~-~~~g~~~Vf~~g~~ 932 (1432)
.+. .. + |++.+.|. +| +|.+|++++. ...|..+||++|+|
T Consensus 633 ~~d---~~----------t-------g~l~d~r~---~~----------------LG~~pv~L~~~~~~~~~~V~a~s~r 673 (1158)
T 3ei3_A 633 GLN---IE----------T-------GLLSDRKK---VT----------------LGTQPTVLRTFRSLSTTNVFACSDR 673 (1158)
T ss_dssp EEC---TT----------T-------CCEEEEEE---EE----------------CCSSCCEEEEEESSSCEEEEEESSS
T ss_pred EEC---CC----------C-------CCCCCCEE---EE----------------CCCCCEEEEEEEECCCEEEEEECCC
T ss_conf 972---78----------8-------74166416---88----------------0787439999962893369997799
Q ss_pred CEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEEEC
Q ss_conf 66999928821796426898438991035788884399999459189998399985688741589960797113899937
Q 000545 933 PCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFA 1012 (1432)
Q Consensus 933 P~~i~~~~~~l~~~p~~~~~~v~~~~~f~~~~~~~g~i~~~s~~~L~I~~l~~~~~~d~~~~ir~~i~L~~tpr~I~y~~ 1012 (1432)
|||+|++++++.++|+.. .++.++++|++++||+|+++++ +++|+||+++...+ |++|+ |||++|||||+||+
T Consensus 674 p~liy~~~~~l~~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~----~~~~~-ipL~~Tprri~y~~ 746 (1158)
T 3ei3_A 674 PTVIYSSNHKLVFSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK----LHIRT-VPLYESPRKICYQE 746 (1158)
T ss_dssp CEEEEESSSSEEEEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS----EEEEE-EECSSEEEEEEEEG
T ss_pred CEEEEECCCCEEEECCCH-HHHCEEECCCCCCCCCCEEEEC-CCCEEEEEECCCCC----EEEEE-EECCCCCEEEEECC
T ss_conf 779997289067702475-7815670447123898499993-89569999566577----05899-86888711899828
Q ss_pred CCCEEEEEEEECCCCCCCC---CCC------CCCCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEE
Q ss_conf 8896999986335454211---011------12343334444--578888322246654211799996169999994466
Q 000545 1013 EKNLYPLIVSVPVLKPLNQ---VLS------LLIDQEVGHQI--DNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTR 1081 (1432)
Q Consensus 1013 ~~~~~~v~~s~~~~~~~~~---~~~------~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~l~d~~~~~~~~~~i 1081 (1432)
++++|+|+++... +... ..+ ...+++..... ..+....++..+++..++++++++|| .+|+++
T Consensus 747 ~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp----~t~~~i 820 (1158)
T 3ei3_A 747 VSQCFGVLSSRIE--VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ----HTFEVL 820 (1158)
T ss_dssp GGTEEEEEEEEEE--EECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET----TTCCEE
T ss_pred CCCEEEEEEEECC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCEEEEEEEEEEC----CCCEEE
T ss_conf 8898999998445--4565433450122123444310134432344333576112288404689999928----977698
Q ss_pred EEEECCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEC-CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEE
Q ss_conf 667789998367999999642588876219999961005-9886666069999976459999743899998861484179
Q 000545 1082 ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQ-GEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISA 1160 (1432)
Q Consensus 1082 ~~~~l~~~E~v~si~~v~l~~~~~~~~~~~ivVGT~~~~-~Ed~~~~Gri~vf~i~~~~~~~~~~lk~i~~~~~~G~V~a 1160 (1432)
++|+|++||.++|++.+.|. ++.++|+||||++.. +|+++++|||++|++.. .+|+++|+++++|+|+|
T Consensus 821 ~~~~l~~nE~~~sv~~v~~~----~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~------~kL~lv~~~~v~g~v~a 890 (1158)
T 3ei3_A 821 HAHQFLQNEYALSLVSCKLG----KDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD------GKLQTVAEKEVKGAVYS 890 (1158)
T ss_dssp EEEECCTTEEEEEEEEECCT----TCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET------TEEEEEEEEEESSCEEE
T ss_pred EEEECCCCCCEEEEEEEEEC----CCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEC------CEEEEEEEEECCCCCEE
T ss_conf 88967999516899999980----599889999941537888777865899999989------99999999972876879
Q ss_pred ECCCCCEEEEEECCEEEEEECCCCEEEEE-EEECCCCEEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEEEEEECCCC
Q ss_conf 84446809999689699997238814457-85059983699998868999998635539999996115779996503688
Q 000545 1161 LASLQGHLLIASGPKIILHKWTGTELNGI-AFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGS 1239 (1432)
Q Consensus 1161 l~~~~g~Ll~avg~~i~i~~~~~~~L~~~-a~~~~~~~~i~sl~~~~n~IlvgD~~~Sv~l~~~~~~~~~l~~~arD~~~ 1239 (1432)
|++|+|+|++|+|++|++|+|+++++++. +..-. ...+++|++.+|+|+|||+|+|++|++|++++++|+++|||+.+
T Consensus 891 l~~~~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~ 969 (1158)
T 3ei3_A 891 MVEFNGKLLASINSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNP 969 (1158)
T ss_dssp EEEETTEEEEEETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSC
T ss_pred EEEECCEEEEECCCEEEEEECCCCCEEEEEEECCC-CEEEEEEECCCCEEEEEEHHHEEEEEEEECCCCEEEEEEEECCC
T ss_conf 84269989999199999998789965788730146-17999980149899999934308999997678859999723633
Q ss_pred CCEEEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 21898899870991699998168859999618998888357468999988518505688998630277888899999988
Q 000545 1240 LDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDK 1319 (1432)
Q Consensus 1240 ~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~g~~L~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~ 1319 (1432)
+|++|++| +|+++ ++++|++|||++++|+|+.+++.+++||+.+++||+|+.||+|+++++.++.... ...
T Consensus 970 ~~vta~~~-ld~~t--~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~------~~~ 1040 (1158)
T 3ei3_A 970 NWMSAVEI-LDDDN--FLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE------TST 1040 (1158)
T ss_dssp BCEEEEEE-EETTE--EEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------------
T ss_pred CCEEEEEE-ECCCC--EEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCC------CCC
T ss_conf 40789999-71686--8998588858999648888883126651108899589967469816560488755------554
Q ss_pred CCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCC
Q ss_conf 88638999925995899994795769999999999984079999999312333235898899999961118789998089
Q 000545 1320 TNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEML 1399 (1432)
Q Consensus 1320 ~~~~~ii~~t~~GsIg~i~pl~e~~~~~L~~LQ~~l~~~~~~~~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlle~fl~L 1399 (1432)
...+.++|+|++|+||+++|++++.|++|..||++|++.++++||+||++||+|+++++. .|+++||||||||+|++|
T Consensus 1041 ~~~~~il~~T~~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~--~~~~~~iDGdLle~fl~L 1118 (1158)
T 3ei3_A 1041 PTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKT--EPATGFIDGDLIESFLDI 1118 (1158)
T ss_dssp CEEEEEEEEETTSCEEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCE--ECCBSEEEHHHHHGGGGS
T ss_pred CCCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCEECCCCC--CCCCCCCCHHHHHHHHCC
T ss_conf 565239999368778999974999999999999999864789769897996170134556--788765949999988759
Q ss_pred CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHC
Q ss_conf 9999999998939----------9999999999971100
Q 000545 1400 PLEEQLEIAHQTG----------TTRSQILSNLNDLALG 1428 (1432)
Q Consensus 1400 ~~~~q~~ia~~lg----------~~~~~i~~~l~~l~~~ 1428 (1432)
+.++|++||++++ ++++||.|+||+|++-
T Consensus 1119 ~~~~q~~ia~~l~~~~~~~~~~~~t~~ei~k~~e~l~r~ 1157 (1158)
T 3ei3_A 1119 SRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRI 1157 (1158)
T ss_dssp CHHHHHHHCCCC------------CCHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999863724444455799999999999998654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=12.6
Q ss_pred EEEEEECCCEEEEEECCCCCEEE
Q ss_conf 99999419859999889980568
Q 000545 753 YSVVCYESGALEIFDVPNFNCVF 775 (1432)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~ 775 (1432)
+++.+..||.+.+|.+...+...
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEE
T ss_pred EEEEEECCCEEEEEECCCCCCCC
T ss_conf 89999789859999688886553
No 3
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=48.73 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=53.9
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEECCC-CCE-EEEEE-CCEEEEEECCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 60699999764599997438999988614841798444-680-99996-8969999723881445785059983699998
Q 000545 1127 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGH-LLIAS-GPKIILHKWTGTELNGIAFYDAPPLYVVSLN 1203 (1432)
Q Consensus 1127 ~Gri~vf~i~~~~~~~~~~lk~i~~~~~~G~V~al~~~-~g~-Ll~av-g~~i~i~~~~~~~L~~~a~~~~~~~~i~sl~ 1203 (1432)
.|.|++|++... ++.........++|++++-- +|. |+++. ..+|++|++...+++..-.... ...|+++.
T Consensus 466 d~~i~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~ 538 (615)
T 1pgu_A 466 GNTIQVFKLSDL------EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAIS 538 (615)
T ss_dssp TSCEEEEETTEE------EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEE
T ss_pred CCEEEEEECCCC------CCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCCCEEEEECCC-CCCEEEEE
T ss_conf 986999988885------43533367765750799998999989981799859986577776246760478-87146999
Q ss_pred E------------ECCEEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCEEEEEEEECCCCEEEEEEC
Q ss_conf 8------------6899999863553999999611577999650368821898899870991699998168859999618
Q 000545 1204 I------------VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1271 (1432)
Q Consensus 1204 ~------------~~n~IlvgD~~~Sv~l~~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1271 (1432)
. .+.+++.|+.-..|.++.++.....+..+ ..+...++++.|..|+ . ++.+..+|.+.+++.+
T Consensus 539 ~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~l~~s~~~-~--l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 539 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NAHKDGVNNLLWETPS-T--LVSSGADACIKRWNVV 613 (615)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TSSTTCEEEEEEEETT-E--EEEEETTSCEEEEEEC
T ss_pred ECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECHHH--HCCCCCEEEEEECCCC-C--EEEECCCCEEEEEEEE
T ss_conf 768323453324688889998179719999778885403113--3594305899973899-7--2884599639999601
No 4
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=1.00 E-value=1 Score=46.04 Aligned_cols=110 Identities=16% Similarity=0.266 Sum_probs=66.8
Q ss_pred EEEEEEECCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999808789999928929999951897369852483213788755787761148998522344565444577543346
Q 000545 661 VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAID 740 (1432)
Q Consensus 661 Iv~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1432)
+.+.+..+.+++....||.|.++..........+.. -...|.++....
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~------h~~~V~~l~~~~-------------------------- 172 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG------HDGGVWALKYAH-------------------------- 172 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC------CSSCEEEEEECS--------------------------
T ss_pred EEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEEC------CCCCEEEEEECC--------------------------
T ss_conf 999998999999975999289999998838999927------776789999869--------------------------
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998785999999419859999889980568842656664211111000013343100157875477788645456
Q 000545 741 GADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIH 820 (1432)
Q Consensus 741 ~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~~~~~~~~~~~~~~~~~~~ 820 (1432)
.. +++.+..||.+.+|.+...+++..... +
T Consensus 173 ---------~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~----------------------------------------h 202 (464)
T 3v7d_B 173 ---------GG-ILVSGSTDRTVRVWDIKKGCCTHVFEG----------------------------------------H 202 (464)
T ss_dssp ---------TT-EEEEEETTSCEEEEETTTTEEEEEECC----------------------------------------C
T ss_pred ---------CC-EEEEEECCCCEEEEECCCCCEEEEECC----------------------------------------C
T ss_conf ---------99-899994789889997898957999899----------------------------------------8
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE
Q ss_conf 54189999620468888409999960995999997
Q 000545 821 SMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1432)
Q Consensus 821 ~~~i~~i~~~~lG~~~~~~~L~vgl~~G~l~~y~~ 855 (1432)
.-.+..+.+... ....+|+.+-.||.+..|.+
T Consensus 203 ~~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~ 234 (464)
T 3v7d_B 203 NSTVRCLDIVEY---KNIKYIVTGSRDNTLHVWKL 234 (464)
T ss_dssp SSCEEEEEEEES---SSCEEEEEEETTSCEEEEEC
T ss_pred CCCCEEEEEECC---CCCCEEEEECCCCCEEEEEC
T ss_conf 986689997637---99888999759982899107
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=45.21 Aligned_cols=112 Identities=14% Similarity=0.236 Sum_probs=62.0
Q ss_pred CEEEEEEE--CCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 49999980--8789999928929999951897369852483213788755787761148998522344565444577543
Q 000545 660 TVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1432)
Q Consensus 660 ~Iv~asi~--d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1432)
.|.+..++ +.+++....||.+.++............. ....+.++++..+.
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~--------------------- 711 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKS--------------------- 711 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC------CSSCEEEEEECSSS---------------------
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECC------CCCCEEEEEEECCC---------------------
T ss_conf 789999926999899981899599987799936899958------99737999984089---------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34699999998785999999419859999889980568842656664211111000013343100157875477788645
Q 000545 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKE 817 (1432)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~~~~~~~~~~~~~~~~ 817 (1432)
...+++.+..||.+.+|.+...+++.....-
T Consensus 712 ------------~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h------------------------------------- 742 (1249)
T 3sfz_A 712 ------------NHLLLATGSNDFFLKLWDLNQKECRNTMFGH------------------------------------- 742 (1249)
T ss_dssp ------------SCCEEEEEETTSCEEEEETTSSSEEEEECCC-------------------------------------
T ss_pred ------------CCEEEEEEECCCEEEEEECCCCCHHHEECCC-------------------------------------
T ss_conf ------------9659999808970999989996342201277-------------------------------------
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE
Q ss_conf 45654189999620468888409999960995999997
Q 000545 818 NIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1432)
Q Consensus 818 ~~~~~~i~~i~~~~lG~~~~~~~L~vgl~~G~l~~y~~ 855 (1432)
.-.+..+.+. ....+|..+..||.+..|.+
T Consensus 743 ---~~~v~~~~~s-----p~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 743 ---TNSVNHCRFS-----PDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp ---SSCEEEEEEC-----SSTTEEEEEESSSEEEEEEG
T ss_pred ---CCCEEEEEEE-----CCCCEEEEEECCCEEEEEEC
T ss_conf ---7978899992-----59998999978985999968
No 6
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=41.13 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=47.6
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEECC-CC----CEEE-EEECCEEEEEECC
Q ss_conf 2199999610059886666069999976459999743899998861484179844-46----8099-9968969999723
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQ----GHLL-IASGPKIILHKWT 1182 (1432)
Q Consensus 1109 ~~~ivVGT~~~~~Ed~~~~Gri~vf~i~~~~~~~~~~lk~i~~~~~~G~V~al~~-~~----g~Ll-~avg~~i~i~~~~ 1182 (1432)
..++++|+ ..|.+.+|+.... ..+.+.+++- -+ ++|+ ++....|++|++.
T Consensus 404 g~~la~~~---------~~g~v~l~~~~~~---------------~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 404 SNSYALID---------ETGQIKYYKNFKE---------------VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp SSCEEEEC---------TTCCEEEEETTEE---------------CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred CCEEEEEE---------CCCCEEEEECCCC---------------CCCEEECCCCCCCCEECCEEEEEECCCEEEEEECC
T ss_conf 98599996---------8983999977777---------------52439737867552365469999669989999987
Q ss_pred CCEEEEEEEECCCCEEEEEEEEECCEEEEEE-----CCCCEEEEEEEC
Q ss_conf 8814457850599836999988689999986-----355399999961
Q 000545 1183 GTELNGIAFYDAPPLYVVSLNIVKNFILLGD-----IHKSIYFLSWKE 1225 (1432)
Q Consensus 1183 ~~~L~~~a~~~~~~~~i~sl~~~~n~IlvgD-----~~~Sv~l~~~~~ 1225 (1432)
..+++.. ++. +..-......+.++++++ ..+++.++.|+.
T Consensus 460 ~~~~~~~--~~~-~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~ 504 (814)
T 3mkq_A 460 NGTLVRR--IDV-NAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNK 504 (814)
T ss_dssp TCCEEEE--ESS-CEEEEEECTTSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred CCCEEEE--EEC-CCCEEEECCCCCEEEEEECCCCCCCCEEEEEEECH
T ss_conf 6959999--735-88879996999999999867666774289999546
No 7
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=1.00 E-value=1 Score=40.77 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=7.8
Q ss_pred CEEEEEEECCEEEEEE
Q ss_conf 0999996099599999
Q 000545 839 PFLFAILTDGTILCYQ 854 (1432)
Q Consensus 839 ~~L~vgl~~G~l~~y~ 854 (1432)
.+|+++..+|.+..|.
T Consensus 110 ~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWD 125 (337)
T ss_dssp SEEEEEESSSEEEEEE
T ss_pred CEEEEECCCCCEEEEE
T ss_conf 8899980899689987
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=40.42 Aligned_cols=180 Identities=16% Similarity=0.115 Sum_probs=113.3
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEECCCCCEEEEEE--CCEEEEEECCCCEE
Q ss_conf 2199999610059886666069999976459999743899998861484179844468099996--89699997238814
Q 000545 1109 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIAS--GPKIILHKWTGTEL 1186 (1432)
Q Consensus 1109 ~~~ivVGT~~~~~Ed~~~~Gri~vf~i~~~~~~~~~~lk~i~~~~~~G~V~al~~~~g~Ll~av--g~~i~i~~~~~~~L 1186 (1432)
..++++|. .+.+.++++.. -+.+......+++++++--+.+|+++. ...|.+|++...++
T Consensus 418 ~~~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 418 GFTAVLTN----------DDDLLILQSFT--------GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp SEEEEEET----------TSEEEEEETTT--------CCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred CCEEEEEC----------CCCEEEEECCC--------CCEEEECCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 87899967----------98269994467--------8665551567872077883888999656898699998888543
Q ss_pred EEEEEECCCCEEEEEEEE--ECCEEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEEE----------CCCEE
Q ss_conf 457850599836999988--689999986355399999961157799965036882189889987----------09916
Q 000545 1187 NGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLI----------DGSTL 1254 (1432)
Q Consensus 1187 ~~~a~~~~~~~~i~sl~~--~~n~IlvgD~~~Sv~l~~~~~~~~~l~~~arD~~~~~vta~~fl~----------d~~~l 1254 (1432)
....+... ...|+++.. .+.++++|+.-..+.++ +....+....-...+...++++.|.. ++..
T Consensus 480 ~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw--~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~- 555 (615)
T 1pgu_A 480 SFDLKTPL-RAKPSYISISPSETYIAAGDVMGKILLY--DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL- 555 (615)
T ss_dssp EEECSSCC-SSCEEEEEECTTSSEEEEEETTSCEEEE--ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE-
T ss_pred CCCCCCCC-CCCEEEEEECCCCCEEEECCCCCEEEEE--ECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCE-
T ss_conf 53336776-5750799998999989981799859986--5777762467604788714699976832345332468888-
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCE
Q ss_conf 99998168859999618998888357468999988518505688998630277888899999988886389999259958
Q 000545 1255 SLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSI 1334 (1432)
Q Consensus 1255 ~~i~~D~~gNl~vl~~~p~~~~s~~g~~L~~~~~f~lg~~vt~~~~~~l~~~~~~~~~~~~g~~~~~~~~ii~~t~~GsI 1334 (1432)
++.+..+|.|.++..... .++...-.-| .+.|+++. +.|. .. ++.++.+|.|
T Consensus 556 -l~~~~~dg~i~iw~~~~~-------~~~~~~~~~h-~~~v~~l~---~s~~---------------~~-l~s~~~d~~v 607 (615)
T 1pgu_A 556 -VATGSLDTNIFIYSVKRP-------MKIIKALNAH-KDGVNNLL---WETP---------------ST-LVSSGADACI 607 (615)
T ss_dssp -EEEEETTSCEEEEESSCT-------TCCEEETTSS-TTCEEEEE---EEET---------------TE-EEEEETTSCE
T ss_pred -EEEECCCCCEEEEECCCC-------CEECHHHHCC-CCCEEEEE---ECCC---------------CC-EEEECCCCEE
T ss_conf -999817971999977888-------5403113359-43058999---7389---------------97-2884599639
Q ss_pred EEEE
Q ss_conf 9999
Q 000545 1335 GCIA 1338 (1432)
Q Consensus 1335 g~i~ 1338 (1432)
.+.-
T Consensus 608 ~iw~ 611 (615)
T 1pgu_A 608 KRWN 611 (615)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9996
No 9
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=39.79 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=14.7
Q ss_pred EEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 999994198599998899805688
Q 000545 753 YSVVCYESGALEIFDVPNFNCVFT 776 (1432)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~~ 776 (1432)
+++.+..||.+.+|.+...+++..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEE
T ss_pred EEEEEECCCEEEEEECCCCCEEEE
T ss_conf 899991897599988889968887
No 10
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=1.00 E-value=1 Score=39.61 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=4.7
Q ss_pred EEEEECCCCEEEE
Q ss_conf 9998168859999
Q 000545 1256 LVVSDEQKNIQIF 1268 (1432)
Q Consensus 1256 ~i~~D~~gNl~vl 1268 (1432)
++.+..+|.+.++
T Consensus 321 l~~~~~dg~i~iw 333 (337)
T 1gxr_A 321 IVTGSGDKKATVY 333 (337)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 9996499719999
Done!