Citrus Sinensis ID: 000545

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430--
MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL
cccEEEEEcccccCEEEEEEEEECcccccccccccccccccccccccccccccccccEEEEEEcEEEEEEEEEcccccccccccccccccEEEcccccccEEEEEEEEEEEEEEEEEEEEcccccccccccEEEEEEccccEEEEEECcccccCEEEEEEECcccccccccccccccccccEEEEcccccEEEEEEEccEEEEEEccccccccccccccccccccccccccccEEEEcccccccEEEEEEEEccccccEEEEEEEccccccccccccccEEEEEEEEEEcccccccEEEEcccccccccEEEECcccccEEEEEEccEEEEEccccccEEEccccccccccccccccCEEEEEEEEEEEEEEEccEEEEEEccccEEEEEEEEcccEEEEEEEEECccccccccEEEEcccEEEEEEEcccEEEEEEECcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccCEEcccccccccccccccccccccEEEEcccccCEEEEEEccccccccccccccccccccccEEEEEEcccEEEEEEcccEEEEEEcccccccccEEEEEEEccccEEEEEEcccEEEECccccEEEcccccccccccccccccCEEEEEEcccEEEEEEEcccEEEEEEcccccEEEECcccccccccccCEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEEECccccCEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEccEEEEEEEccccccccccccccccccccccCECcCEEcCCccccccccccccccccccccccccEEEEEECcccccEEEEEcccccEEEEEEcccCEEECccccccEEEEEEEcccccccEEEEEEcccEEEEEEccccccccccccEEEEEEccccccEEEEEccccEEEEEEECccccccccHHHHccccccccccccccccccccccccccccEEEEEECccccccccEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEccccccccccEEEEEEEEEccccccEEEEEEEEEccccccEEccccccEEEEEccEEEEEEccccccccEEEEccccEEEEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEcccccccccEEEEECcccCEEEEEECccccEEEEEEcccccccccccccccEEEEcccccEEEEEEEEEEEcccccccccccccccccEEEEEEEccccEEEEECccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccCCHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccc
**FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEEL*******RGIGPVPNLVVTAANVIEIYVVRV*****************VLMDGISAASLELVCHYRLHGNVESLAILSQGGA**SRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSG*V***********FSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGS********************************ALQDMVNGEEL***************TFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHK**************YDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQ***AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALK************************MKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFE***********************SASRLRN******************GAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQ*VGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLA***************NRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL
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MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADASATGISKQSNYELVELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKVIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Cleavage and polyadenylation specificity factor subunit 1 CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction.confidentQ9FGR0
Probable cleavage and polyadenylation specificity factor subunit 1 CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction.probableQ7XWP1

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3E0C, chain A
Confidence level:probable
Coverage over the Query: 1106-1269,1281-1300,1311-1314,1325-1376
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3ei3, chain Aconfident Alignment | Template Structure
3ei3, chain Aconfident Alignment | Template Structure