BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000546
(1432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power
Stroke State
Length = 995
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 1204 ELEAIASSLETSVDMSES----TQNGSAPDSSSTTDANYAKIVREKAKELSLDLKS---- 1255
ELEAI +SL+T + + + G P+ +T + K +E A+ L ++LK
Sbjct: 817 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 876
Query: 1256 --ITQLYNEYAVPFELWEICLEMLYFANYTGDADSSI 1290
+ Q YN E W + +N TGD+ +++
Sbjct: 877 AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAV 913
>pdb|3I5Q|B Chain B, Nup170(Aa1253-1502) At 2.2 A, S.Cerevisiae
pdb|3I5Q|A Chain A, Nup170(Aa1253-1502) At 2.2 A, S.Cerevisiae
Length = 252
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1234 TDANYAKIVR-EKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIR 1292
TDA ++ E K L + S ++L+N++AVP EI L + A++ D +I
Sbjct: 31 TDARIDSAIKDELIKTLDGKILSTSELFNDFAVPLSYHEIALFIFKIADFR---DHEVIM 87
Query: 1293 ETWARL 1298
W L
Sbjct: 88 AKWDEL 93
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 211 YELLYTTGSGWYKRCRKV 228
YE+LYT G+G Y RC+K+
Sbjct: 8 YEVLYTIGTGSYGRCQKI 25
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 211 YELLYTTGSGWYKRCRKV 228
YE+LYT G+G Y RC+K+
Sbjct: 8 YEVLYTIGTGSYGRCQKI 25
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 211 YELLYTTGSGWYKRCRKV 228
YE+LYT G+G Y RC+K+
Sbjct: 8 YEVLYTIGTGSYGRCQKI 25
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 1204 ELEAIASSLETSVDMSES----TQNGSAPDSSSTTDANYAKIVREKAKELSLDLKS---- 1255
ELEAI +SL+T + + + G P+ +T + K +E A+ L ++LK
Sbjct: 825 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 884
Query: 1256 --ITQLYNEYAVPFELWEICLEMLYFANYTGDADSSI 1290
+ Q YN E W + +N TGD+ +++
Sbjct: 885 AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAV 921
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,891,164
Number of Sequences: 62578
Number of extensions: 1540124
Number of successful extensions: 3330
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3325
Number of HSP's gapped (non-prelim): 9
length of query: 1432
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1321
effective length of database: 8,027,179
effective search space: 10603903459
effective search space used: 10603903459
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)