BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000546
(1432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75694|NU155_HUMAN Nuclear pore complex protein Nup155 OS=Homo sapiens GN=NUP155 PE=1
SV=1
Length = 1391
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 368/1364 (26%), Positives = 583/1364 (42%), Gaps = 247/1364 (18%)
Query: 56 PLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCP 115
P + + LP LVE++ + N + G+FP I RAW ++D+ +F+W ++ G
Sbjct: 79 PEISSIRRVPLPPELVEQFGHM--QCNCMMGVFPPISRAWLTIDSDIFMWNYED-GGDLA 135
Query: 116 EYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCC----SGAGDGTDPYA 171
+ G + I AVGL K K GIF +++LL+LATPV+++++G+ +G+G D +
Sbjct: 136 YFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANLQTGSGVLNDSLS 195
Query: 172 E-ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVC 229
+ L P P Y++P+D + IT TD GRI LAG+DG +YE+ Y +GW+ +RCRK+
Sbjct: 196 GGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKIN 255
Query: 230 HTAGVGNVISRWIVPNV--FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDG 287
H+ + ++VP++ F F DPI+++ DN R +LY R+E+ +QV+ LG +G G
Sbjct: 256 HSKSSLS----FLVPSLLQFTFSEDDPILQIAIDNSRNILYTRSEKGVIQVYDLGQDGQG 311
Query: 288 PLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSD 347
+ + +N G R RS +V I+ + ES L+AV
Sbjct: 312 MSRVASVSQNAI----VSAAGNIA---RTIDRSVFKPIVQIAVIENSESLDCQLLAVTHA 364
Query: 348 GRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAG 407
G R+Y ST F RP+ L +V R P GF A S
Sbjct: 365 GVRLYFSTCP-------------FRQPLARPNTLTLVHVRLPP--------GFSASSTVE 403
Query: 408 RNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARI--- 464
+ KV A YS G L+++ + L V+ D P +A +
Sbjct: 404 KPS------KVHRALYSKGILLMAASENEDNDILWCVNHDTFPFQKPMMETQMTAGVDGH 457
Query: 465 SRALRESVTSLPVEGRMLSVT-DILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKL 523
S AL ++ L V+ + + D +P+ D+ VQ
Sbjct: 458 SWAL-SAIDELKVDKIITPLNKDHIPITDSPVVVQ------------------------- 491
Query: 524 WARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELN--SPRSILEDFFNRFG 581
QH+LP ++ V+ S G + RPVD LR L N +E FF
Sbjct: 492 --------QHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQ 543
Query: 582 AGEAAAMCLMLAARIVHSENLIS----NAVAEKAAEAFV--------------------- 616
+A A CL+LA + +S A EA +
Sbjct: 544 EDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPTTLPPPSNVGPILGSPVY 603
Query: 617 ------------DPRLVGMPQLEGSN---------ALANTRTAAGGFSMGQVVQEAEPVF 655
+P +G P G AL N T A S V E V+
Sbjct: 604 SSSPVPSGSPYPNPSFLGTPS-HGIQPPAMSTPVCALGNPATQATNMS---CVTGPEIVY 659
Query: 656 SGAYEGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFL 715
SG + G+C+ SR++ +W+ +VV+ S N + SS Q+LE+ ++ L
Sbjct: 660 SGKHNGICIYFSRIMGNIWD-ASLVVERIFKSGNREITAIESSVPCQLLESVLQEL---- 714
Query: 716 RCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSN 775
+GL ++ +G L G + Q LI + R + N
Sbjct: 715 -------KGLQEFLDRNSQFAGGPL-GNPNTTAKVQQRLI-----GFMRPENGNPQQMQQ 761
Query: 776 KRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQEL 835
+ QR + A+L+ E +++ I+QL+ +S +AL L +LL +H T +V L+++L
Sbjct: 762 ELQR-KFHEAQLS--EKISLQAIQQLVRKSYQALALWKLLCEHQFTIIVAELQKELQEQL 818
Query: 836 VQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKF 895
TF LV ++ L LI++L+ Y + VD IS L++ CP + D
Sbjct: 819 KITTFKDLVIRDK--ELTGALIASLINCYIRDNA--AVDGISLHLQDICPLLYSTDDAIC 874
Query: 896 FLAVECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPL 955
A E L+R+ + EKE + RE+ K+ DL VC ++ +RFYE VV L L
Sbjct: 875 SKANELLQRSRQVQNKTEKERMLRESLKEYQKISNQVDLSNVCAQYRQVRFYEGVVELSL 934
Query: 956 QKAQALDPAGDAFNDQIDAATRE-----YALVQRQQCYEIITSALRSL--KGDSSQREFG 1008
A+ DP G + E A +R Y+ IT L+ L + ++ +
Sbjct: 935 TAAEKKDPQGLGLHFYKHGEPEEDIVGLQAFQERLNSYKCITDTLQELVNQSKAAPQSPS 994
Query: 1009 SPVRPAGPRSALDP-----ASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLE 1063
P +P P + DP + Q+++L +S D +F LY +I + L ++LL+
Sbjct: 995 VPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDELFSIALYNWLIQVDLADKLLQ 1054
Query: 1064 YGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKR 1123
P L P L + + N +Y DLL RYY R
Sbjct: 1055 VASPFLEPHLVRMAK-------------------------VDQNRVRYMDLLWRYYEKNR 1089
Query: 1124 QHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNG 1183
AA VL RLA+ ST+ +L QR +Y++ AIL AK++T S+ A D
Sbjct: 1090 SFSNAARVLSRLADMHSTE----ISLQQRLEYIARAILSAKSSTAISSI------AADGE 1139
Query: 1184 LLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVR 1243
L LE K+ V R Q +I++ L+ + + + S D+ S D+
Sbjct: 1140 FLHELEEKMEVARIQLQIQETLQ------------RQYSHHSSVQDAVSQLDS------- 1180
Query: 1244 EKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQ-- 1301
+L IT+LY E+A PF+L E L +++ A Y+ D +++ W +I++
Sbjct: 1181 --------ELMDITKLYGEFADPFKLAECKLAIIHCAGYS---DPILVQTLWQDIIEKEL 1229
Query: 1302 ----ALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEK 1341
LS A S+ + +Y G PLD + LE+
Sbjct: 1230 SDSVTLSSSDRMHALSLKIVLLGKIYAGTPRFFPLDFIVQFLEQ 1273
>sp|Q99P88|NU155_MOUSE Nuclear pore complex protein Nup155 OS=Mus musculus GN=Nup155 PE=2
SV=1
Length = 1391
Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust.
Identities = 359/1360 (26%), Positives = 578/1360 (42%), Gaps = 239/1360 (17%)
Query: 56 PLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCP 115
P + + LP LVE++ + N + G+FP I RAW ++D+ +F+W ++ G
Sbjct: 79 PEISTIRRVPLPPELVEQFGHM--QCNCMMGVFPPISRAWLTIDSDIFMWNYED-GGDLA 135
Query: 116 EYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAE--- 172
+ G + I AVGL K K GIF +++LL+LATPV+++++G+ + G+ +
Sbjct: 136 YFDGLSETILAVGLVKPKAGIFQPHVRHLLVLATPVDIVILGLSYANVQTGSGILNDSMC 195
Query: 173 --ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVC 229
+ L P P Y++P+D + IT TD GRI LAG+DG +YE+ Y +GW+ +RCRK+
Sbjct: 196 GGMQLLPDPLYSLPTDNTYLLTITSTDNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKIN 255
Query: 230 HTAGVGNVISRWIVPNV--FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDG 287
H+ + ++VP++ F F DPIV++ DN R +LY R+E+ +QV+ LG +G G
Sbjct: 256 HSKSSLS----FLVPSLLQFTFSEDDPIVQIEIDNSRNILYTRSEKGVIQVYDLGHDGQG 311
Query: 288 PLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSD 347
+ + +N G R RS +V I+ + + ES L+AV
Sbjct: 312 MSRVASVSQNAI----VSAAGNIA---RTIDRSVFKPIVQIAVIESSESLDCQLLAVTHA 364
Query: 348 GRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAG 407
G R+Y ST F RP+ L +V R P GF A S
Sbjct: 365 GVRLYFSTCP-------------FRQPLARPNTLTLVHVRLPP--------GFSASSTVE 403
Query: 408 RNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYPTGSLGTSARI--- 464
+ KV A YS G L+++ + L V+ D P + R+
Sbjct: 404 KPS------KVHKALYSKGILLMTASENEDNDILWCVNHDTFPFQKPMMETQMTTRVDGH 457
Query: 465 SRALRESVTSLPVEGRMLSVT-DILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKL 523
S AL ++ L V+ + + D +P+ D+ VQ
Sbjct: 458 SWAL-SAIDELKVDKIITPLNKDHIPITDSPVVVQ------------------------- 491
Query: 524 WARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELN--SPRSILEDFFNRFG 581
QH+LP ++ V+ S G + RPVD LR L N +E FF
Sbjct: 492 --------QHMLPPKKFVLLSAQGSLMFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQ 543
Query: 582 AGEAAAMCLMLAARIVHSENLIS----NAVAEKAAEAFV--------------------- 616
+A A CL+LA + +S A EA +
Sbjct: 544 EDQACATCLILACSTAACDREVSAWATRAFFRYGGEAQMRFPATLPTPSNVGPILGSPMY 603
Query: 617 ------------DPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEA-----EPVFSGAY 659
+P +G P +T A G Q + E V+SG +
Sbjct: 604 SSSPVPSGSPYPNPSSLGTPSHGAQPPTMSTPMCAVGSPAMQAASMSGLTGPEIVYSGKH 663
Query: 660 EGLCLCASRLLFPLWELPVMVVKGDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIR 719
G+C+ SR++ +W+ +VV+ S N + SS +Q+LE+ ++ L
Sbjct: 664 NGICIYFSRIMGNIWDAS-LVVERVFKSSNREITAIESSVPVQLLESVLQEL-------- 714
Query: 720 NQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQR 779
+GL ++ SG L G + Q L+ + R + N + QR
Sbjct: 715 ---KGLQEFLDRNSQFSGGPL-GNPNTTARVQQRLV-----GFMRPENGNTQQMQQELQR 765
Query: 780 LPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLT 839
+ A+L+ E +++ I+QL+ +S +AL L +LL +H + +V +++L T
Sbjct: 766 -KFQEAQLS--EKISLQAIQQLVRKSYQALALWKLLCEHQFSVIVGELQKEFQEQLKITT 822
Query: 840 FCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAV 899
F LV ++ + LI++L+ Y + VD IS L++ CP + D A
Sbjct: 823 FKDLVIRDK--EVTGALIASLINCYIRDNA--AVDGISLHLQDTCPLLYSTDDAVCSKAN 878
Query: 900 ECLERAAVTSDSEEKENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQ 959
E L+R+ E+E + RE+ K+ DL +VC ++ +RFYE VV L L A+
Sbjct: 879 ELLQRSRQVQSKTERERMLRESLKEYQKISNQVDLPSVCAQYRQVRFYEGVVELSLTAAE 938
Query: 960 ALDPAGDAFNDQIDAATRE-----YALVQRQQCYEIITSALRSL--KGDSSQREFGSPVR 1012
DP G + E +R Y+ IT L+ L + ++ + P +
Sbjct: 939 KKDPQGLGLHFYKHGEPEEDVVGLQTFQERLNSYKCITDTLQELVNQSKAAPQSPSVPKK 998
Query: 1013 PAGPRSALDP-----ASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGP 1067
P P + DP + Q+++L +S D +F LY +I L ++LL+ P
Sbjct: 999 PGPPVLSSDPNMLSNEEAGHHFEQMLKLAQRSKDELFSIALYNWLIQADLADKLLQIASP 1058
Query: 1068 DLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLL 1127
L P L R + N +Y DLL RYY R
Sbjct: 1059 FLEPHLVRMAR-------------------------VDQNRVRYMDLLWRYYEKNRSFSS 1093
Query: 1128 AAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDL 1187
AA VL +LA+ ST+ +L QR +Y++ AIL AK++T S+ A D L
Sbjct: 1094 AARVLSKLADMHSTE----ISLQQRLEYIARAILSAKSSTAISSI------AADGEFLHE 1143
Query: 1188 LEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAK 1247
LE K+ V R Q +I++ L+ + + + S D+ S D+
Sbjct: 1144 LEEKMEVARIQLQIQETLQ------------RQYSHHSSVQDAISQLDS----------- 1180
Query: 1248 ELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQ------ 1301
+L IT+LY E+A PF+L E L +++ A Y+ D ++ W +I++
Sbjct: 1181 ----ELMDITKLYGEFADPFKLAECKLAVIHCAGYS---DPILVHTLWQDIIEKELNDSV 1233
Query: 1302 ALSKGGIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEK 1341
ALS A S+ + +Y G PLD + LE+
Sbjct: 1234 ALSSSDRMHALSLKLVLLGKIYAGTPRFFPLDFIVQFLEQ 1273
>sp|P37199|NU155_RAT Nuclear pore complex protein Nup155 OS=Rattus norvegicus GN=Nup155
PE=1 SV=1
Length = 1390
Score = 360 bits (925), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 353/1334 (26%), Positives = 566/1334 (42%), Gaps = 237/1334 (17%)
Query: 82 NALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAI 141
A+ G+FP I RAW ++D+ +F+W ++ G + G + I AVGL K K GIF +
Sbjct: 102 TAMMGVFPPISRAWLTIDSDIFMWNYED-GGDLAYFDGLSETILAVGLVKPKAGIFQPHV 160
Query: 142 QYLLILATPVELILVGVCCSGAGDGTDPYAE-----ISLQPLPEYTVPSDGVTMTCITCT 196
++LL+LATPV+++++G+ + G+ + + L P P Y++P+D + IT T
Sbjct: 161 RHLLVLATPVDIVILGLSYANVQTGSGILNDSVCGGLQLLPDPLYSLPTDNTYLLTITST 220
Query: 197 DKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNV--FRFGAVD 253
D GRI LAG+DG +YE+ Y +GW+ +RCRK+ H+ + ++VP++ F F D
Sbjct: 221 DNGRIFLAGKDGCLYEVAYQAEAGWFSQRCRKINHSKSSLS----FLVPSLLQFTFSEDD 276
Query: 254 PIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTG 313
PIV++ DN R +LY R+E+ +QV+ LG +G G + + +N G
Sbjct: 277 PIVQIEIDNSRNILYTRSEKGVIQVYDLGHDGQGMSRVASVSQNAI----VCAAGNIA-- 330
Query: 314 QRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNN 373
R RS +V I+ + ES L+AV G R+Y ST F
Sbjct: 331 -RTIDRSVFKPIVQIAVIENSESLDCQLLAVTHAGVRLYFSTCP-------------FRQ 376
Query: 374 HHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDA 433
RP+ L +V R P GF A S + KV A YS G L+++ +
Sbjct: 377 PLARPNTLTLVHVRLPP--------GFSASSTVEKPS------KVHKALYSKGILLMTAS 422
Query: 434 SPPTMSSLIIVSKDPSSQSYPTGSLGTSARI---SRALRESVTSLPVEGRMLSVT-DILP 489
L V+ D P + R+ S AL ++ L V+ + + D +P
Sbjct: 423 ENEDNDILWCVNHDTFPFQKPMMETQMTTRVDGHSWAL-SAIDELKVDKIITPLNKDHIP 481
Query: 490 LPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMM 549
+ D+ VQ QH+LP ++ V+ S G +
Sbjct: 482 ITDSPVVVQ---------------------------------QHMLPPKKFVLLSAQGSL 508
Query: 550 EVVFNRPVDILRRLFELN--SPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLIS--- 604
RPVD LR L N +E FF +A A CL+LA + +S
Sbjct: 509 MFHKLRPVDQLRHLLVSNVGGDGEEIERFFKLHQEDQACATCLILACSTAACDREVSAWA 568
Query: 605 -NAVAEKAAEA---------------------------------FVDPRLVGMPQLEGSN 630
A EA + +P +G P
Sbjct: 569 TRAFFRYGGEAQMRFPATLPTPSNVGPILGSPMYSSSPVPTGSPYPNPSSLGTPSHGAQP 628
Query: 631 ALANTRTAAGGFSMGQVVQEA-----EPVFSGAYEGLCLCASRLLFPLWELPVMVVKGDA 685
+T +A G Q + E V+SG + G+C+ SR++ +W+ +VV+
Sbjct: 629 PTMSTPMSAVGNPAMQAASLSGLTGPEIVYSGKHNGICIYFSRIMGNIWDAS-LVVERVF 687
Query: 686 ISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGA 745
S N + SS +Q+LE+ ++ L +GL ++ SG L G
Sbjct: 688 KSSNREITAIESSVPIQLLESVLQEL-----------KGLQEFLDRNSQFSGGPL-GNPN 735
Query: 746 DSVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRQLLLRS 805
+ Q L+ + R + N + QR + A+L+ E +++ I+QL+ +S
Sbjct: 736 TTAKVQQRLLGVM-----RPENGNTQQMQQELQR-KFHEAQLS--EKISLQAIQQLVRKS 787
Query: 806 AEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYT 865
+AL L +LL +H T +V +++L TF LV E+ + LI++L+ Y
Sbjct: 788 YQALALWKLLCEHQFTVIVGELQKEFQEQLKITTFKDLVIREK--EVTGALIASLINCYI 845
Query: 866 DPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFL 925
+ VD IS L++ CP + D A E L+R+ E+E + RE+
Sbjct: 846 RDNA--AVDGISLHLQDTCPLLYSTDDAVCSKANELLQRSRQVQSKSERERMLRESLKEY 903
Query: 926 SKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATRE-----YA 980
K+ DL +VC ++ +RFYE VV L L A+ DP G + E
Sbjct: 904 QKISNQVDLPSVCAQYRQVRFYEGVVELSLTAAEKKDPQGLGLHFYKHGEPEEDVVGLQT 963
Query: 981 LVQRQQCYEIITSALRSL--KGDSSQREFGSPVRPAGPRSALDP-----ASRKKYICQIV 1033
+R Y+ IT L+ L + ++ + P +P P + DP + Q++
Sbjct: 964 FQERLNSYKCITDTLQELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQML 1023
Query: 1034 QLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSA 1093
+L +S D +F LY +I L ++LL+ P L P L +
Sbjct: 1024 KLAQRSKDELFSIALYNWLIQADLADKLLQIASPFLEPHLVRMAK--------------- 1068
Query: 1094 ASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRR 1153
+ N +Y DLL RYY R AA VL +LA+ ST+ +L QR
Sbjct: 1069 ----------VDQNRVRYMDLLWRYYEKNRSFSSAARVLSKLADMHSTEI----SLQQRL 1114
Query: 1154 QYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLE 1213
+Y++ AIL AK++T S+ A D L LE K+ V R Q +I++ L+
Sbjct: 1115 EYIARAILSAKSSTAISSI------AADGEFLHELEEKMEVARIQLQIQETLQ------- 1161
Query: 1214 TSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEIC 1273
+ + + S D+ S D+ +L IT+LY E+A PF+L E
Sbjct: 1162 -----RQYSHHSSVQDAISQLDS---------------ELMDITKLYGEFADPFKLAECK 1201
Query: 1274 LEMLYFANYTGDADSSIIRETWARLIDQ------ALSKGGIAEACSVLKRVGSHMYPGDG 1327
L +++ A Y+ D ++ W +I++ LS A S+ + +Y G
Sbjct: 1202 LAIIHCAGYS---DPILVHTLWQDIIEKELSDSVTLSSSDRMHALSLKLVLLGKIYAGTP 1258
Query: 1328 AVLPLDTLCLHLEK 1341
PLD + LE+
Sbjct: 1259 RFFPLDFIVQFLEQ 1272
>sp|Q9URX8|NG06_SCHPO Probable nucleoporin C890.06 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC890.06 PE=3 SV=3
Length = 1315
Score = 216 bits (551), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 317/1357 (23%), Positives = 519/1357 (38%), Gaps = 244/1357 (17%)
Query: 54 WPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQ 113
W P + ++P + E+YN E G+F EI+RAW +VDN LFLW D GQ
Sbjct: 59 WKPFY-LRSVVNIPDRIFEQYNRT--ECFTQMGLFAEIQRAWITVDNRLFLW--DYLSGQ 113
Query: 114 CPE-YTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAE 172
+ Y I V L + K +FV IQ+LL++AT E++L+GV G +
Sbjct: 114 NFQAYEDLSHTIVNVKLVRPKANVFVSEIQHLLVIATSQEMLLLGVTID-EKTGELSFFS 172
Query: 173 ISLQPLPEYTVPSDGVTMTCITCTDKGRILLAG-RDGNIYELLYTTGSGWY-KRCRKVCH 230
+Q + G+ + CI ++ GRI +G +D N+YE Y GW+ +RC K+
Sbjct: 173 TGIQ------ISVQGINVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRRCSKINI 226
Query: 231 TAGVGNVISRWIVPNVFRFGAV-DPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPL 289
T G+V +I P+ F FG D I ++ D+ R LLY E + + L NG
Sbjct: 227 T---GSVFDNFI-PSFFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSCYELTKNG---- 278
Query: 290 KKVAEERNLFNQRDTHHGGRQTTGQRAP---HRSTKPSVVSISPLSTLESKWLHLVAVLS 346
R +F + Q +P R+T+ +VSI P+ ES+ ++ VA+ S
Sbjct: 279 ----VNRCVFYSFSSMISQAQMLNATSPLLDPRTTQ--IVSIVPIPAYESQQIYCVAITS 332
Query: 347 DGRRMYLSTSASSGNSGTVGGVGGFNN--HHFRPSCLKVVTTRPSPPLGV---GGGLGFG 401
G R Y+ G G + N+ PS L++ R PP+ V +
Sbjct: 333 TGCRFYM-----RGGRGPISHYAPSNSTLSSTPPSTLQLTFVRFPPPMQVENYASSRNYP 387
Query: 402 AISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLI--IVSKDPSSQSYPTGSLG 459
A +NQS ++ + S S S L I S + + +
Sbjct: 388 ANPFFLQNQSTSQQQPERSSAVKTTPMKCSSLSNIYTSDLFFAISSSNTNEGDVVCCTAP 447
Query: 460 TSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKS 519
RI+ A + +E M +P+ ++ + + E
Sbjct: 448 EVGRIANAWQSGTQPSLIESSMY-----VPIKGFVQDIKCIQNSRE-------------- 488
Query: 520 SGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSI-----LE 574
R +L +Q P + + G+ VV RP+D+L + S ++
Sbjct: 489 ------RNELVSQFNTPPPTFAILTNTGVYVVVHRRPIDVLASAIRMGPSLSSGIDGQVQ 542
Query: 575 DFFNRFGAGEAAAMCLMLAARIV------HSENLISNAVAEKAAEAFVDPRLVGMPQLE- 627
FF G E A CL + + + H+ S + + A +D +V +E
Sbjct: 543 LFFESVGRAEGCATCLGIVSGCLDQGDFSHAAANFSGSTTKLAQADLLD--IVKKYYIEF 600
Query: 628 GSNALANTRTAAGGFSMGQVVQEAEPV-FSGAYEGLCLCASRLLFPLWELPVMVVKGDAI 686
G A + + + E V SG ++GL SR++ +W+ V++ K
Sbjct: 601 GGKAFIDQSRYNNQYDSSSL----EFVRLSGCHDGLASSISRIIRNVWKNHVIIAKK--- 653
Query: 687 SENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGAD 746
+N + + A ++L KI+S G+ LS +
Sbjct: 654 MQNKRIHYAPAFNATEIL--KIQS--------------------GLLYLSTFL------- 684
Query: 747 SVAGDQSLIRNLFGSYSRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRQLLLRSA 806
++S I L N+ + G+SN + E RA+ + +L +
Sbjct: 685 --ENNKSFIEGL------NSPNTLIGSSNVADEIA------VQAEHRALSALLLVLQQIV 730
Query: 807 EALFLLQLLSQHHVT---RLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISALMEY 863
E + L L+ V+ +V ++++ +TF + S+ G + L+++L+
Sbjct: 731 EGISFLLFLNDTGVSDFHEIVSSTSIDIQKSCSNMTFGEFFTSKRGREVTKELVNSLVNR 790
Query: 864 YTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFN 923
+ G +D +S LR+ C S+ D F AVE L++A T D EE+++L ++
Sbjct: 791 HL--QSGGNIDMVSQLLRKKCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYT 848
Query: 924 FLSK-----VPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAA--- 975
K PE DLR ++ L Y V L L A A D A + +D
Sbjct: 849 LFKKAAHVFTPE--DLRLAVEEYKSLNAYTTAVNLALHVASARDDRNQALSYLVDGMPEN 906
Query: 976 -TREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQ 1034
R R +CY I L SL+ S D ++ K + +Q
Sbjct: 907 DPRREPFESRTKCYSYIFEILDSLESQMSN----------------DSSAIKVDVYDTIQ 950
Query: 1035 LGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAA 1094
+S D +FH Y GL + L+E P + +L+
Sbjct: 951 ---RSKDELFHYCFYDWYSFKGLTDRLIEIDSPYIQSYLERNS----------------- 990
Query: 1095 SLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQ 1154
+ + K DLL +YY + Q+ A+ VL LA A +L+QR +
Sbjct: 991 -----------TKDMKIADLLWQYYAKREQYYQASIVLYDLATTHL-----AFSLEQRIE 1034
Query: 1155 YLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLET 1214
YL+ A S + S R + +L +LE +L V Q D L AI +
Sbjct: 1035 YLTRA-----KGFGSCHVPNSLRHKMNKVMLSVLE-QLDVASIQ---DDVLIAIRGDMRI 1085
Query: 1215 SVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICL 1274
E E +K+L ++ ++ L+N YA P EICL
Sbjct: 1086 PTSKRE-----------------------ELSKQLDGEIIPLSDLFNNYADPLGYGEICL 1122
Query: 1275 EMLYFANYTG-----DADSSIIRETWARLIDQALSKGGIAEACSVLKRVGSHMYPGDGAV 1329
+ A+Y G + SII+ T I + + S LK + + V
Sbjct: 1123 SIFQCADYRGINEILNCWESIIKTTHENAIISPVGSSPVEAVSSTLKNLTLRFSQSEN-V 1181
Query: 1330 LPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAA 1366
P++ + E+ A D Q E+V + L A
Sbjct: 1182 FPIEQIIDITERYA---FDQQGEAVATGWVIDTFLGA 1215
>sp|P38181|NU170_YEAST Nucleoporin NUP170 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP170 PE=1 SV=1
Length = 1502
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 277/1340 (20%), Positives = 519/1340 (38%), Gaps = 243/1340 (18%)
Query: 59 EVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYT 118
E D +++P ++ ++ + + + GIFPE+ R W ++DN L LW + D +
Sbjct: 149 EKQDVFNIPDEILHEFSTSQTKTD--MGIFPELNRCWITIDNKLILWNINN-DNEYQVVD 205
Query: 119 GEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178
+ I V L + KP FV A+++LL+++T +EL + + A + +
Sbjct: 206 DMKHTIQKVALVRPKPNTFVPAVKHLLLISTTMELFMFAISLDKATNELSVFN------- 258
Query: 179 PEYTVPSDGVTMTCITCTDK-GRILLAGRDG--NIYELLYTTGSGWYK-RCRKVCHTAGV 234
+VP G+ + I ++ GRI AG+ NI+EL Y+ W+ +C KVC T
Sbjct: 259 THLSVPVQGIDVIDIVSHERSGRIFFAGQASGLNIWELHYSGSDDWFNSKCSKVCLTKSA 318
Query: 235 ------GNVISRWIVPNVFRFGAV-------------DPIVELVFDNERQLLYARTEEMK 275
N++S+ +P V A+ + I +L D +R ++Y+ + +
Sbjct: 319 LLSLLPTNMLSQ--IPGVDFIQALFEDNSNGNGGFSQETITQLTIDQQRGIIYSLSSKST 376
Query: 276 LQVFVLGPNG-DGPLKKVAEERNLFNQRDTHHGGR---QTTGQRAPHRSTKP-SVVSISP 330
++ +V+ +GP+ + + R TT + AP K +V IS
Sbjct: 377 IRAYVITEKSLEGPM-----------SIEPAYISRIIGTTTARAAPILGPKYLKIVKISS 425
Query: 331 LSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSP 390
++ E+ L LVA+ G R+Y + G +G FN R +K + +P
Sbjct: 426 VAPEENNNLFLVALTVGGVRLYFN-----------GSMGRFNIEALRLESIKFPPSSVTP 474
Query: 391 PLGVGGGLGFGAISLAGRN--------QSDDISLKVE--TAYYSAGTLVLSDASPPTMSS 440
+ + L A R+ S+ + LK + ++ T + SP S
Sbjct: 475 EV-IQQELLHQQQEQAKRSFPFFSNLMSSEPVLLKFQKKSSVLLETTKASTIISPGIFFS 533
Query: 441 LIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPV---EGRMLSVTDILPLPDTATTV 497
+I S + Q + + + A ++V PV +SV D L V
Sbjct: 534 AVIKSSQQTHQQEKKENSSVTGTTATAGSKTVKQQPVTLQHKLFVSVPDYGILKTHGKYV 593
Query: 498 QSLYSELEFCG-----FEISGESCEKSSGKLWARGDLSTQHILPRRRIVVFSTMGMMEVV 552
++ + LE G +SG + + +A + +TQ+ R+ V ++ +
Sbjct: 594 ENA-TFLETAGPVQQIIPLSGLFNATTKPQGFA-NEFATQYTSETLRVAVLTSTSIEIYK 651
Query: 553 FNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVA--EK 610
+ P +I L + P F +GA EA + L + + SE L SNA+
Sbjct: 652 YRTPDEIFEDLIDNPLP------FVLNYGAAEACSTALFVTCKSNKSEKLRSNALTFLTM 705
Query: 611 AAEAFVDPRLV-------------GMPQLEGSNALANTRTAAGGFSMGQVVQEA-----E 652
VD + V P L S A N + + GFS + +
Sbjct: 706 GIPGVVDIKPVYNRYSVSTVSSLLSKPTL--STATTNLQQSITGFSKPSPANKEDFDLDD 763
Query: 653 PVFSGAYEGLCLCASRLLFPLWELPV-MVVKGDAISENGVVVCR--LSSGAMQVLENKIR 709
+ S + G+ L +RLL +W V M + ++ + + ++ + ++I
Sbjct: 764 VILSPRFYGIALLITRLLRDIWGRHVFMTFTDNRVTSHAFISSSDPITPSINNLKSDEIS 823
Query: 710 SLEKFLRCIRNQRRGLYGYVAGMGDLSG-SILYGTGADSVAGDQSLIRNLFGSYSRNADS 768
+ + + + Y++ + L+ I YG ++ L N S
Sbjct: 824 QNRNIISKVSISKDCIEYYLSSINILNEFFITYGDSISQISAPYVLANN----------S 873
Query: 769 NGAGTSNKRQRLPYSPAELA-AIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGF 827
NG R+ E+A E A+ + +++ E L L +L + V+GF
Sbjct: 874 NG--------RVIDKTEEVANQAESIAINAMIKMVQSIKEGLSFLNVLYEESE---VEGF 922
Query: 828 DA--------------NLRQELVQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRG-T 872
D +++++LV+L F L + + R I L+ +G +
Sbjct: 923 DNQYLGFKDIISFVSLDVQKDLVKLDFKDLFAPNDKTKSLIREI--LLSIINRNITKGAS 980
Query: 873 VDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTS--DSEEKENLAREAFNFLSKVPE 930
++ + L+E C S+ SD F A+E L RA + + + A L ++ +
Sbjct: 981 IEYTATALQERCGSFCSASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNATALLEQIVD 1040
Query: 931 S---ADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDA----FNDQIDAATREYALVQ 983
L+ + +Y + L A ++D A N ++ R+ +
Sbjct: 1041 DLSIEKLKEAVSMMLSVNYYPKSIEFLLNIANSMDKGKLACQYVANGFLENDDRKQYYDK 1100
Query: 984 RQQCYEIITSALRSLKGDS-SQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDR 1042
R Y+++ L +K D ++++ S + S D ++ + + ++ DR
Sbjct: 1101 RILVYDLVFDTL--IKVDELAEKKQSSKTQNQISISNDDEVKLRQ---KSYEAALKYNDR 1155
Query: 1043 IFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGT 1102
+FH ++Y ++ E +LL+ P ++P+ LM + G+
Sbjct: 1156 LFHYHMYDWLVSQNREEKLLDIETPFILPY-----------------------LMEKAGS 1192
Query: 1103 PIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQ 1162
+ K ++L YY + + +A +L RLA T D TL +R ++LS A
Sbjct: 1193 SL-----KISNILWVYYSRRSKFFESAEILYRLA----TSNFDI-TLFERIEFLSRA--- 1239
Query: 1163 AKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKD--ELEAIASSLETSVDMSE 1220
F N + L K +++ ++I+D E+ I + + V
Sbjct: 1240 ---------------NGFCNS-VSPLSQKQRIVQLASRIQDACEVAGIQGDILSLV---- 1279
Query: 1221 STQNGSAPDSSSTTDANYAKIVR-EKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYF 1279
TDA ++ E K L + S ++L+N++AVP EI L +
Sbjct: 1280 ------------YTDARIDSAIKDELIKTLDGKILSTSELFNDFAVPLSYHEIALFIFKI 1327
Query: 1280 ANYTGDADSSIIRETWARLI 1299
A++ D +I W L
Sbjct: 1328 ADF---RDHEVIMAKWDELF 1344
>sp|P40064|NU157_YEAST Nucleoporin NUP157 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP157 PE=1 SV=1
Length = 1391
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 37/300 (12%)
Query: 86 GIFPEIRRAWASVDNSLFLWRFDK-WDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYL 144
GIF E+ W + DN L LW + + C + E I V L K P FV +++ L
Sbjct: 164 GIFLELNYCWITSDNKLILWNINNSSEYHCIDEI--EHTILKVKLVKPSPNTFVSSVENL 221
Query: 145 LILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDK-GRILL 203
LI+AT ++ ++ + + D E+++ V G ++ I ++ G+I
Sbjct: 222 LIVATLFDIYILTISFN------DRTHELNIFN-TGLKVNVTGFNVSNIISYERTGQIFF 274
Query: 204 AG-RDG-NIYELLYTTGSGWYK-RCRKVCHT-AGVGNVISRWIVPNVFRFGAVDPIVE-- 257
G DG N++EL Y + + K+C T + + N++ ++P++ + ++E
Sbjct: 275 TGATDGVNVWELQYNCSENLFNSKSNKICLTKSNLANLLPTKLIPSIPGGKLIQKVLEGD 334
Query: 258 ----------LVFDNERQLLYARTEEMKLQVFVLGPNG-DGPLKKVAEERNLFNQRDTHH 306
L D R +L+ + + ++ +++ NG GP+ L +
Sbjct: 335 AGTEEETISQLEVDQSRGVLHTLSTKSIVRSYLITSNGLVGPV--------LIDAAHIRR 386
Query: 307 GGRQTTGQRAPHRSTKP-SVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTV 365
G + +P S + + I +S E+ L L + + G R+Y S S + G++
Sbjct: 387 GMNALGVKNSPLLSNRAFKIAKIVSISMCENNDLFLAVITTTGVRLYFKGSISRRSIGSL 446
>sp|Q59526|PARE_MYCGA DNA topoisomerase 4 subunit B OS=Mycoplasma gallisepticum (strain
R(low / passage 15 / clone 2)) GN=parE PE=3 SV=2
Length = 633
Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 187 GVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNV 246
GV + + + I+ RDG +YE +Y G + +KV ++ G ++ W P +
Sbjct: 116 GVGASVVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTKHGTIVQFWPDPTI 175
Query: 247 FRFGAVDP 254
F+ +P
Sbjct: 176 FKNIQFNP 183
>sp|Q571H0|NPA1P_MOUSE Nucleolar pre-ribosomal-associated protein 1 OS=Mus musculus GN=Urb1
PE=2 SV=2
Length = 2274
Score = 35.0 bits (79), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 801 LLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQLVCSEEGDRLATRLISAL 860
L R + FL LLS T+L+ G +++ R +LVQL+ ++ ++ L T ++S+
Sbjct: 1435 LKFRYHDLTFLKTLLS---ATKLLYGPESSGRTKLVQLSVVHMMLTQHSLFLPT-MLSSE 1490
Query: 861 MEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECL------ERAAVTSDSEEK 914
E D + T+ D+ + CPS + S + L ++ + + E+
Sbjct: 1491 EEETPDSGVKETLLDLMSTVVRLCPSVCQSSHFAVLLGTYSATLSVLDQKILLLLRAYEQ 1550
Query: 915 ENLAREAFNFLSKVPESADLRTVCR 939
NL+ +F L P + + CR
Sbjct: 1551 NNLSLISFRVLLWGPAAVEHHKTCR 1575
>sp|O54827|AT10A_MOUSE Probable phospholipid-transporting ATPase VA OS=Mus musculus
GN=Atp10a PE=1 SV=4
Length = 1508
Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 554 NRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAE 613
++P +R FEL SP +EDF RF A+ C + NL ++ + K+
Sbjct: 591 DQPRQKVRVRFELKSPVKTIEDFLRRFTPSRLASGCSSIG-------NLSTSKSSHKSGS 643
Query: 614 AFV-----DPRLVGMPQLEGSNA 631
AF+ D L+G+ + G A
Sbjct: 644 AFLPSLSQDSMLLGLEEKLGQTA 666
>sp|A9BCK0|EFTU_PROM4 Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9211)
GN=tuf PE=3 SV=1
Length = 399
Score = 33.9 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 834 ELVQLTFCQLVCSEE--GDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKES 891
ELV++ +L+ S + GD + +SAL D + G +D++ + E P +E
Sbjct: 148 ELVEMEIRELLSSYDFPGDDIPVIQVSALKALEGDSEWEGKIDELMKSVDESIPEPEREV 207
Query: 892 DYKFFLAVE 900
D F +AVE
Sbjct: 208 DKPFLMAVE 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,118,637
Number of Sequences: 539616
Number of extensions: 22340618
Number of successful extensions: 55213
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 55153
Number of HSP's gapped (non-prelim): 40
length of query: 1432
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1302
effective length of database: 121,419,379
effective search space: 158088031458
effective search space used: 158088031458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)