Query 000546
Match_columns 1432
No_of_seqs 181 out of 255
Neff 6.3
Searched_HMMs 46136
Date Mon Apr 1 18:48:56 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1900 Nuclear pore complex, 100.0 1E-194 3E-199 1792.5 77.1 1202 5-1428 8-1268(1311)
2 COG5308 NUP170 Nuclear pore co 100.0 5E-176 1E-180 1551.2 62.4 1135 12-1427 19-1225(1263)
3 PF08801 Nucleoporin_N: Nup133 100.0 6.7E-52 1.5E-56 502.6 8.2 402 53-550 2-422 (422)
4 PF03177 Nucleoporin_C: Non-re 100.0 2.2E-51 4.9E-56 517.6 -0.1 518 695-1338 3-586 (586)
5 KOG1900 Nuclear pore complex, 98.9 2.2E-07 4.7E-12 120.3 25.4 98 523-628 451-550 (1311)
6 KOG4121 Nuclear pore complex, 97.4 0.0046 1E-07 79.4 18.7 242 936-1301 777-1026(1128)
7 KOG4521 Nuclear pore complex, 95.8 0.36 7.8E-06 63.6 18.8 158 936-1162 988-1156(1480)
8 cd00200 WD40 WD40 domain, foun 93.7 0.87 1.9E-05 49.9 13.3 148 83-280 139-289 (289)
9 cd00200 WD40 WD40 domain, foun 93.0 3.6 7.9E-05 45.0 16.9 151 83-282 13-165 (289)
10 PF11715 Nup160: Nucleoporin N 91.4 1.4 3E-05 56.4 12.5 178 99-283 43-249 (547)
11 KOG0319 WD40-repeat-containing 90.3 0.89 1.9E-05 57.7 8.8 141 98-282 385-535 (775)
12 KOG0646 WD40 repeat protein [G 90.2 7.4 0.00016 47.5 15.8 96 181-284 212-309 (476)
13 KOG0646 WD40 repeat protein [G 90.1 2.9 6.4E-05 50.8 12.4 78 188-283 124-207 (476)
14 PLN00181 protein SPA1-RELATED; 89.8 7.7 0.00017 52.0 17.8 156 95-281 635-792 (793)
15 KOG0315 G-protein beta subunit 88.2 7.4 0.00016 44.3 13.0 179 94-354 14-195 (311)
16 KOG0289 mRNA splicing factor [ 86.3 12 0.00027 45.4 14.1 177 81-284 221-421 (506)
17 KOG0291 WD40-repeat-containing 85.1 11 0.00024 48.6 13.6 140 97-282 369-508 (893)
18 KOG0279 G protein beta subunit 83.6 58 0.0013 38.0 17.3 157 97-283 82-263 (315)
19 KOG0274 Cdc4 and related F-box 81.4 9 0.00019 49.0 11.3 139 88-283 257-401 (537)
20 KOG0308 Conserved WD40 repeat- 79.5 19 0.0004 45.9 12.5 151 94-283 89-244 (735)
21 KOG2111 Uncharacterized conser 79.3 68 0.0015 38.0 16.2 83 181-284 175-258 (346)
22 KOG0275 Conserved WD40 repeat- 74.4 15 0.00032 43.0 9.1 137 97-280 367-507 (508)
23 KOG2096 WD40 repeat protein [G 74.1 61 0.0013 38.3 13.9 142 94-282 149-308 (420)
24 KOG2111 Uncharacterized conser 71.9 1.1E+02 0.0023 36.5 15.2 145 100-296 75-221 (346)
25 KOG0319 WD40-repeat-containing 71.8 44 0.00095 43.3 13.1 137 93-283 296-443 (775)
26 KOG2110 Uncharacterized conser 71.4 1.1E+02 0.0023 37.0 15.4 160 94-283 60-249 (391)
27 KOG0296 Angio-associated migra 70.5 64 0.0014 38.8 13.3 51 74-129 61-114 (399)
28 PLN00181 protein SPA1-RELATED; 69.7 1E+02 0.0023 41.5 17.3 31 252-282 708-738 (793)
29 PF04840 Vps16_C: Vps16, C-ter 69.1 50 0.0011 39.6 12.6 73 1112-1204 97-170 (319)
30 KOG1188 WD40 repeat protein [G 68.1 16 0.00035 43.2 7.8 164 98-281 141-345 (376)
31 KOG0306 WD40-repeat-containing 67.9 46 0.00099 43.3 12.1 152 80-282 9-179 (888)
32 PF08450 SGL: SMP-30/Gluconola 66.9 51 0.0011 37.3 11.7 103 143-285 52-167 (246)
33 KOG0313 Microtubule binding pr 66.0 49 0.0011 39.9 11.2 164 97-285 122-292 (423)
34 KOG0291 WD40-repeat-containing 65.6 1.8E+02 0.0038 38.3 16.4 178 95-283 206-423 (893)
35 PF10264 Stork_head: Winged he 65.0 20 0.00043 34.3 6.3 57 851-908 11-67 (80)
36 KOG0285 Pleiotropic regulator 64.0 1.8E+02 0.0039 35.1 15.1 194 70-282 228-439 (460)
37 COG2706 3-carboxymuconate cycl 63.7 3.4E+02 0.0073 32.9 18.8 164 100-285 16-224 (346)
38 KOG0276 Vesicle coat complex C 63.3 35 0.00076 43.4 9.7 135 99-282 118-257 (794)
39 PTZ00421 coronin; Provisional 62.8 1.7E+02 0.0036 37.4 16.1 30 254-283 261-291 (493)
40 KOG0266 WD40 repeat-containing 62.4 1E+02 0.0022 38.8 14.1 72 186-283 245-319 (456)
41 KOG0294 WD40 repeat-containing 59.6 94 0.002 36.9 11.7 161 82-295 130-294 (362)
42 KOG0315 G-protein beta subunit 58.5 1.9E+02 0.0042 33.4 13.6 133 100-283 61-198 (311)
43 KOG0293 WD40 repeat-containing 58.1 50 0.0011 40.2 9.5 97 192-353 327-423 (519)
44 PF00400 WD40: WD domain, G-be 57.8 31 0.00066 27.0 5.6 31 250-280 9-39 (39)
45 COG2706 3-carboxymuconate cycl 57.5 3.9E+02 0.0084 32.4 16.6 187 54-284 125-323 (346)
46 PRK11028 6-phosphogluconolacto 56.7 3.3E+02 0.0072 32.1 16.6 31 255-285 128-159 (330)
47 KOG0318 WD40 repeat stress pro 54.8 3.1E+02 0.0067 34.8 15.5 35 250-284 318-352 (603)
48 KOG0642 Cell-cycle nuclear pro 52.6 37 0.00081 42.7 7.6 73 187-283 489-562 (577)
49 PF10282 Lactonase: Lactonase, 52.4 1.2E+02 0.0026 36.5 12.0 119 187-356 143-264 (345)
50 KOG0266 WD40 repeat-containing 51.7 2.8E+02 0.0061 34.9 15.5 155 85-283 209-365 (456)
51 KOG0270 WD40 repeat-containing 51.0 4.7E+02 0.01 32.6 16.0 48 81-129 241-294 (463)
52 PTZ00420 coronin; Provisional 50.5 1.2E+02 0.0025 39.5 11.9 25 193-217 269-294 (568)
53 PF10168 Nup88: Nuclear pore c 49.4 2E+02 0.0044 38.4 14.1 137 143-295 42-190 (717)
54 KOG0772 Uncharacterized conser 48.7 1E+02 0.0022 38.7 10.2 168 80-283 168-395 (641)
55 KOG0318 WD40 repeat stress pro 47.2 2.9E+02 0.0062 35.1 13.6 137 96-283 380-518 (603)
56 KOG0642 Cell-cycle nuclear pro 46.4 1.4E+02 0.003 37.9 11.0 180 88-282 302-519 (577)
57 KOG0285 Pleiotropic regulator 44.3 4.6E+02 0.0099 31.9 14.2 175 98-282 171-389 (460)
58 KOG0288 WD40 repeat protein Ti 43.6 2.3E+02 0.005 34.9 11.9 161 97-283 238-418 (459)
59 PF07938 Fungal_lectin: Fungal 42.9 50 0.0011 39.5 6.5 40 183-222 154-197 (311)
60 PF13570 PQQ_3: PQQ-like domai 42.6 23 0.00051 28.6 2.7 19 196-214 19-37 (40)
61 PTZ00420 coronin; Provisional 41.9 9.3E+02 0.02 31.5 21.9 141 98-282 52-197 (568)
62 PF04184 ST7: ST7 protein; In 41.8 2.1E+02 0.0046 36.2 11.6 48 884-931 157-204 (539)
63 KOG1273 WD40 repeat protein [G 40.8 2.8E+02 0.006 33.2 11.6 139 96-282 83-226 (405)
64 KOG0308 Conserved WD40 repeat- 40.4 2.4E+02 0.0052 36.6 11.8 135 98-282 138-285 (735)
65 KOG2919 Guanine nucleotide-bin 40.4 1.3E+02 0.0028 35.9 9.0 126 192-354 233-366 (406)
66 KOG0265 U5 snRNP-specific prot 39.8 6.8E+02 0.015 29.9 14.4 144 99-283 68-247 (338)
67 KOG2110 Uncharacterized conser 39.5 4.3E+02 0.0093 32.3 13.1 35 250-285 171-206 (391)
68 KOG0649 WD40 repeat protein [G 38.5 64 0.0014 36.9 6.0 63 197-283 125-187 (325)
69 PTZ00421 coronin; Provisional 37.2 6.3E+02 0.014 32.3 15.4 33 251-283 167-199 (493)
70 PRK11028 6-phosphogluconolacto 36.4 7.7E+02 0.017 29.0 19.9 84 188-285 175-261 (330)
71 PF05694 SBP56: 56kDa selenium 36.4 1.3E+02 0.0029 37.4 8.7 145 181-357 238-394 (461)
72 KOG0292 Vesicle coat complex C 32.0 5.7E+02 0.012 34.6 13.4 63 197-284 216-282 (1202)
73 KOG0276 Vesicle coat complex C 31.7 5.3E+02 0.012 33.5 12.8 138 99-284 34-173 (794)
74 PF10366 Vps39_1: Vacuolar sor 31.7 1.1E+02 0.0024 30.9 6.0 28 1111-1138 41-68 (108)
75 PF00780 CNH: CNH domain; Int 31.2 1.2E+02 0.0025 34.9 7.1 61 196-283 5-65 (275)
76 KOG0973 Histone transcription 30.9 1.6E+02 0.0034 40.0 8.6 105 178-283 60-202 (942)
77 TIGR01063 gyrA DNA gyrase, A s 30.8 5.3E+02 0.011 35.1 13.8 129 187-356 535-668 (800)
78 KOG2048 WD40 repeat protein [G 30.7 4.6E+02 0.0099 34.3 12.2 125 129-282 474-601 (691)
79 KOG0296 Angio-associated migra 30.6 7.8E+02 0.017 30.1 13.4 171 97-282 167-356 (399)
80 KOG2114 Vacuolar assembly/sort 30.3 1.7E+02 0.0038 38.9 8.7 70 191-284 28-102 (933)
81 KOG0310 Conserved WD40 repeat- 29.1 6E+02 0.013 32.0 12.5 75 119-217 24-99 (487)
82 KOG1587 Cytoplasmic dynein int 29.0 4.2E+02 0.0092 34.4 11.9 181 94-288 259-478 (555)
83 KOG0772 Uncharacterized conser 28.7 2.2E+02 0.0047 36.0 8.7 100 98-221 384-491 (641)
84 KOG0640 mRNA cleavage stimulat 28.4 1E+03 0.022 28.7 13.4 208 99-357 193-406 (430)
85 KOG1446 Histone H3 (Lys4) meth 28.4 2.6E+02 0.0057 33.2 9.0 18 196-213 241-261 (311)
86 KOG0294 WD40 repeat-containing 28.4 4.7E+02 0.01 31.4 11.0 132 146-282 4-157 (362)
87 KOG0286 G-protein beta subunit 28.2 5.2E+02 0.011 30.7 11.2 135 99-281 165-302 (343)
88 KOG1539 WD repeat protein [Gen 28.0 7.5E+02 0.016 33.3 13.6 34 320-353 393-426 (910)
89 PF14727 PHTB1_N: PTHB1 N-term 27.2 1.3E+03 0.027 29.1 15.2 41 119-164 69-110 (418)
90 KOG2048 WD40 repeat protein [G 26.4 1.2E+03 0.026 30.7 14.7 169 84-283 328-506 (691)
91 PRK14574 hmsH outer membrane p 26.1 4.4E+02 0.0095 36.0 11.9 225 840-1138 192-445 (822)
92 KOG4460 Nuclear pore complex, 25.8 2.5E+02 0.0055 35.6 8.6 89 188-284 104-200 (741)
93 PF03178 CPSF_A: CPSF A subuni 25.2 6.4E+02 0.014 29.8 12.1 103 91-218 98-204 (321)
94 KOG0278 Serine/threonine kinas 24.9 9.1E+02 0.02 28.3 12.0 77 181-284 221-299 (334)
95 PF14779 BBS1: Ciliary BBSome 24.9 1.7E+02 0.0037 34.1 6.7 76 121-213 176-255 (257)
96 KOG1920 IkappaB kinase complex 23.6 2.3E+03 0.049 30.4 21.7 67 1048-1168 914-980 (1265)
97 smart00320 WD40 WD40 repeats. 23.4 1.3E+02 0.0029 21.0 3.9 30 251-280 11-40 (40)
98 PF02333 Phytase: Phytase; In 23.1 1.4E+03 0.029 28.5 14.2 34 252-285 207-240 (381)
99 PF10433 MMS1_N: Mono-function 23.1 1.2E+03 0.026 29.7 14.6 163 127-354 207-387 (504)
100 KOG1912 WD40 repeat protein [G 23.0 1.7E+02 0.0038 38.5 6.7 86 137-222 238-360 (1062)
101 KOG0305 Anaphase promoting com 22.8 7.2E+02 0.016 31.8 12.0 165 62-284 285-463 (484)
102 KOG0272 U4/U6 small nuclear ri 22.5 3E+02 0.0066 34.0 8.3 138 91-282 232-375 (459)
103 KOG0974 WD-repeat protein WDR6 22.2 6.7E+02 0.015 34.3 12.0 167 93-275 404-577 (967)
104 KOG1332 Vesicle coat complex C 21.9 1.2E+03 0.025 27.4 12.1 159 93-284 26-195 (299)
105 KOG0286 G-protein beta subunit 21.8 3.3E+02 0.0071 32.3 8.1 86 98-209 207-296 (343)
106 KOG1446 Histone H3 (Lys4) meth 20.2 1.5E+03 0.033 27.1 14.5 76 187-289 100-177 (311)
No 1
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-194 Score=1792.49 Aligned_cols=1202 Identities=32% Similarity=0.448 Sum_probs=923.5
Q ss_pred cchhhhcccccchhhhhhhhhhhccccCHHHHHhhccccCCCCCCCCCCCCCcccccccccCCHHHHHHHHhcCCccccc
Q 000546 5 EEILMRDVTNAGLVVSDRIGREVASQLDVEEALEASRYASHPYTTHPREWPPLVEVVDTWDLPTVLVERYNAAGGEGNAL 84 (1432)
Q Consensus 5 ~~~~~~~~~~a~~~~~d~~~~d~~~~pdl~~~l~~~~~~~~~y~~~~~~w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~ 84 (1432)
.+.+..++....-...|++.+-..+-.++.+.+ +..|.+++++....+|+||.+. .+++||+||+|||+++ +|+|.
T Consensus 8 ~~~v~~hv~~~~~~~~~~i~~~t~~dl~~~p~~-gl~~~~~~~~~~L~~~~p~~~~-~v~~IP~el~eq~~~~--~~~~~ 83 (1311)
T KOG1900|consen 8 VSGVEGHVTELLVLGSDFIGRLTMSDLKLTPVL-GLGYAFSYEVRGLPEFRPFYRQ-QVVNIPDELLEQFSNI--ECKTD 83 (1311)
T ss_pred hhhhhhhhhhHHHhhhhhhhhhhhcCCCCCccc-ccccccccccCCCccCCceeec-ccccCCHHHHHHhcCc--ceeee
Confidence 344555554444455566655555444455554 4578888889888899999874 9999999999999999 99999
Q ss_pred cccccccceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCC
Q 000546 85 CGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAG 164 (1432)
Q Consensus 85 mGlFpEI~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~ 164 (1432)
|||||||+|||+||||+||||||+++++ +++|||++|+|++|||||||||||+++|+||||||||+||+||||+|+...
T Consensus 84 mGiFpeI~RaWiTiDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~ 162 (1311)
T KOG1900|consen 84 MGIFPEIGRAWITIDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFT 162 (1311)
T ss_pred eccchhhcceEEEeCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecccc
Confidence 9999999999999999999999998554 589999999999999999999999999999999999999999999998655
Q ss_pred CCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecCCCEEEEEEecCCccc-cccceeeeccCcccccccccc
Q 000546 165 DGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIV 243 (1432)
Q Consensus 165 ~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf-~rC~Kinht~g~~S~~~~~ll 243 (1432)
+ +...+++. |+|++||++|+||++|++|||||+|+||||||+.||.++||| +||+|||||+|..|. +|
T Consensus 163 ~------~~~~f~~~-~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~----lv 231 (1311)
T KOG1900|consen 163 G------ELSIFNTS-FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSS----LV 231 (1311)
T ss_pred C------cccccccc-eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHH----hh
Confidence 4 56678775 999999999999999999999999999999999999999999 999999999987777 47
Q ss_pred Ccccc--cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCC
Q 000546 244 PNVFR--FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRST 321 (1432)
Q Consensus 244 Ps~~~--~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1432)
|++++ ++.+|+|.||+||++|+|||+|+++|+|++|+||++|.+.++.+ ++ .+..+..++.+. ..+ .+++.
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~-~~----~~~~i~~qa~~~-~~~-~~~s~ 304 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFV-SV----SRNYIDVQALSL-KNP-LDDSV 304 (1311)
T ss_pred hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeee-eh----hHHHHHHHhhhc-ccc-CCCcc
Confidence 77543 35789999999999999999999999999999999998884444 33 222222222111 112 77889
Q ss_pred CCcEEEEEecCccCccceEEEEEecCceEEEEecCCCCCCCCCccCcCCCCCCCCCCCceEEEEEcCCCCCCCCCCCCcc
Q 000546 322 KPSVVSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFG 401 (1432)
Q Consensus 322 ~~~IvsI~pIs~~ES~~l~LVAVT~~G~RLYfs~~~~~~~~~~~~~~~g~~~~~~rP~~L~lvhvR~PP~~~~~~~~~~~ 401 (1432)
+++||+|+||++.||.++||||+|++|+||||+++++..+. .+|. +..++.||+... +
T Consensus 305 f~~IvsI~~l~~~es~~l~LvA~ts~GvRlYfs~s~~r~~~-------------~~~~---~~s~~~~p~~~~-----~- 362 (1311)
T KOG1900|consen 305 FFSIVSISPLSASESNDLHLVAITSTGVRLYFSTSSGRQST-------------SAPF---LCSVKHTPTSNS-----L- 362 (1311)
T ss_pred cceeEEecccCcccccceeEEEEecCCeEEEEeccCCCccc-------------cccc---ccccCCCCCCCC-----c-
Confidence 99999999999999999999999999999999998753221 1111 112222222110 0
Q ss_pred cccccccCCCCcccceeeeeeecCCcEEEeecCCCCCceEEEEecCCCCCCCC------------------CCCCCCccc
Q 000546 402 AISLAGRNQSDDISLKVETAYYSAGTLVLSDASPPTMSSLIIVSKDPSSQSYP------------------TGSLGTSAR 463 (1432)
Q Consensus 402 ~~~~~~~~~~~~~~~~v~~a~Ys~G~~l~~~~~~~~~d~l~~~s~d~~~~~~~------------------~~~~~~~~~ 463 (1432)
...+ ....|.+|+...+++|...++...++++..++|+...+....-+ +....-...
T Consensus 363 --~q~s---~~p~pl~v~~~~~~~~~t~~a~t~~~~~~~~~~~~~~t~~~~~~~k~~~~lt~~~~~~~~~~s~~~~~l~~ 437 (1311)
T KOG1900|consen 363 --EQTS---ISPPPLQVQNVRSSKGYTPAASTINSDNIELICVAKRTVLLLTLSKSSSSLTAIALVESVLLSCRSDELFV 437 (1311)
T ss_pred --cccc---cCCCCceeeeeeccCCccccceeecCCCceEEEEcccchhcccccccccceEeecccceeeecccccceee
Confidence 0000 01123344444444444444444444444444444333211000 000000001
Q ss_pred ccccceeeEEeeecCCeeEEEeecCCCCCcccccccccccccccccccCCCcccccCCccccCCcccccccCCCceEEEE
Q 000546 464 ISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQHILPRRRIVVF 543 (1432)
Q Consensus 464 ~~~~l~E~~~~~~~~g~~~~i~~v~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~k~~~~~~~~nela~Q~~~ppr~f~vL 543 (1432)
..+...|..+-.|..+++..+.++-|.+....+.+.++. - .+-.+ .|+|++||..+|.+++++
T Consensus 438 s~~~~g~~~~~~~~~e~~~~~e~~~~~~~i~lt~q~~~~----------~------~~~~~-v~~l~~~~~s~~~~~~~~ 500 (1311)
T KOG1900|consen 438 SAPDYGELKTHGPYTEQPASVEDVPPKEIILLTNQDIYT----------S------APLRY-VNVLASQYLSEPGKDAEL 500 (1311)
T ss_pred eccchhhhhhcccccccccchhccCccceeeeecchhhh----------h------hhhhh-HHHHHHHHhcCCchhhhh
Confidence 122223333334444444444443233332222222221 0 11122 477888888888888888
Q ss_pred eCCceEEEEEcChHHHHHHHHhhcCCchHHHHHHHhcChHHHHHHHHHHHcCcccCccccCHHHHHHHHHh---------
Q 000546 544 STMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAEA--------- 614 (1432)
Q Consensus 544 Tn~Gi~i~~~~RPvDiL~~lL~~~~~~~~i~~Ff~~~G~~EacA~~L~LAc~~~~s~~~~~~~v~~~A~~a--------- 614 (1432)
|+.++.++..|||.+++..++.... .|-..++..|||++|++..|....+... ....|..+
T Consensus 501 t~~~~~~~~~R~~~~v~~~li~~~~------~~~~~v~~~~~l~~~~y~~~~~~~s~~~----~gsn~~~~l~~~~~~~~ 570 (1311)
T KOG1900|consen 501 TERSIYLYRYRRPIVVFLSLIKMPL------PFARYVDIWEALATALYGRELYEKSETL----EGSNAGMFLSEAAPGFS 570 (1311)
T ss_pred ccceeEEEeeccHhHHHHHHhcCCC------cccCchHHHHHHHHHhhcchhhhhhccc----ccchhhhHhhccCCCcC
Confidence 8888888888888888888777765 4666667777777777777755433221 00001111
Q ss_pred ------------ccCCCCCCCcccccCccccccccCCCCCccccccccccceeccchhHHHHHHHhhhhhccCCcceeee
Q 000546 615 ------------FVDPRLVGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVMVVK 682 (1432)
Q Consensus 615 ------------f~~~~~~g~p~~~~~~~~~~~~~~~~g~~~g~v~~~~~~~~S~rh~Gl~Ly~sRLlrpiW~~~v~~~~ 682 (1432)
|..+..+|+|+++.+.+..+.++..+| ...+++|||||+|||+|++||+|+||+.+|++..
T Consensus 571 ~~~~ks~~~~~~~~~~~~vg~~~~~~s~~i~~~~~~~p~-------~~~~iv~S~~h~Gl~l~isRll~~vW~~~v~~~~ 643 (1311)
T KOG1900|consen 571 KVTLKSNREMFKFLSNPSVGMPQFDGSQPISTLSNSCPG-------ELDPIVLSGKHDGLALLISRLLRNVWEESVVNET 643 (1311)
T ss_pred cCCcccchhccccccCCCCCcCccccCCCccccCCCCCc-------cCCCeEEeccccchhHHHHHHHHHHHHhHHHHHH
Confidence 112222444444433222222211111 4467899999999999999999999999999862
Q ss_pred cccccCCceEEEccChhhHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcCccccCCCCCCCCCchhhhhhccccc
Q 000546 683 GDAISENGVVVCRLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSY 762 (1432)
Q Consensus 683 ~~~~~~~~~i~~~~s~~~l~~l~~~L~~L~~Fl~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1432)
. ++.+ +++.+.+.++.|+.|++. +....+++.+++++.++.+.+++ ++
T Consensus 644 -~--s~~~---------~~~~l~s~~~sl~~~~~~----~~~y~gs~~~l~~~f~~~l~~~~----------------sf 691 (1311)
T KOG1900|consen 644 -M--SEKS---------KCHLLESFNRSLRSKRNQ----FSYYLGSITGLNEFFNSHLDSTN----------------SF 691 (1311)
T ss_pred -h--hcch---------hhhhHHHhhHHHHhhhhh----cceeeccccccchhhhhcccccc----------------cc
Confidence 1 1211 577788888889998854 55667666777666555544333 33
Q ss_pred cccCCCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhcCCHHHHHHhhcCCccc
Q 000546 763 SRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQHHVTRLVQGFDANLRQELVQLTFCQ 842 (1432)
Q Consensus 763 ~~~~~~~~~~~~~~~~r~~~~~~ea~~~E~~Sl~~L~~Ll~~~~Ealsl~~iL~e~~~~~I~~~L~~~~q~~L~~ltF~d 842 (1432)
.+++..+ ..++++..++..+|+..|.+|+.++.+||.+.+|+ ++|.+|+.|+|++|++.++++.|+.|.++||+|
T Consensus 692 ~~~~~~n----~~~~~~le~~a~~A~~~e~~si~~~~~fl~~~~Ea-~l~~~l~~h~f~~Iv~els~~lqk~l~~ltF~d 766 (1311)
T KOG1900|consen 692 EGPTNGN----AEKAQQLESSAREALALELRSIKEILSFLLVLYEA-FLWFLLSQHHFIDIVSELSADLQKELSCLTFHD 766 (1311)
T ss_pred cccccch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHhCHHHHHHHHhccHHH
Confidence 3333333 33445555667889999999999999999999999 999999999999999999999999999999999
Q ss_pred cccCcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhhCCCCCCccchhhhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 000546 843 LVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAF 922 (1432)
Q Consensus 843 Lv~~~~G~~l~~~Li~aLIn~~i~~~g~~svd~Is~~Lr~~Cpsf~s~dD~~~~KA~E~L~~Ak~~~~~~~r~~~L~eAl 922 (1432)
||++++ ++++++||.++||+||.+. ++||.|+..||++||+||+++|+++|||.|+|++|+.+.+..++++++++++
T Consensus 767 l~~~nd-kel~~~li~slin~~i~s~--a~vd~vs~~Lre~Cps~~s~~D~l~ykA~E~L~~~~~~~~~~~ke~~~r~~l 843 (1311)
T KOG1900|consen 767 LFTSND-KELTKELLISLINRYIMSG--ASVDYVSELLRERCPSFCSASDILTYKAVELLENAAAKLEATIKELMLRESL 843 (1311)
T ss_pred hcCcch-HHHHHHHHHHHHHHHhccC--CChhHHHHHHHHhCcccccchHHHHHHHHHHHHhhhhchhhhHHHHHHHHHH
Confidence 999988 9999999999999999985 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHhCcchHHHHHHHHHHHHhcCCCCCccc------------cCcchhhHHHHHHHHHHHHHH
Q 000546 923 NFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFN------------DQIDAATREYALVQRQQCYEI 990 (1432)
Q Consensus 923 ~Lf~kv~~~~~L~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~------------~~~~~~~r~~~~~~R~~cY~~ 990 (1432)
+++.++.++++|+.+|.+|++++||+|+|++.+.+|.+.||+..+.. |....++|...|+.|..||.+
T Consensus 844 ~~~~~l~~~~~l~~~~~~lr~~~f~e~vv~~~~~~a~~~~~~~~~~~d~~~~e~~~~~~G~~~~~~R~~~y~~r~~~~~~ 923 (1311)
T KOG1900|consen 844 SVATKLFNQVDLRLECADLRAERFYEGVVLLSLTKAVKSDPEGANDHDYKNQELAYDIIGISENDDRKVYYELRTLVYSL 923 (1311)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHhhhhhhhhhhhcChhhchhhhccccchHHHhcCccccChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998863 345578899999999999999
Q ss_pred HHHHHHhhhcCCCcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCccccccccCCChH
Q 000546 991 ITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLV 1070 (1432)
Q Consensus 991 I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~~l~d~LLei~sP~Le 1070 (1432)
||+.+++++.... ..++|..++ +.... +-.++.+++...++++||+||++||+||+.+++.|+||++.|||++
T Consensus 924 if~~l~~~~~~~~--~~q~~~~~n----s~~~~-a~~~~~~~~~~~~k~~d~lfh~~lydwL~~~~~~e~ll~i~sp~~~ 996 (1311)
T KOG1900|consen 924 IFDTLDEADGSQS--ISQSPMKGN----SDSNF-AVGLILKSYMAILKSKDRLFHYALYDWLVAISLLEELLDIESPFIL 996 (1311)
T ss_pred HHHHHHhhccccc--ccCCCCccc----ccchh-hhhhHHHHHHHHhhhcccccchhhHHHHHHhhHHHHHhcccCcccc
Confidence 9999999886422 122222221 33333 5678888999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCchhhhhhcccccccccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHH
Q 000546 1071 PFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLD 1150 (1432)
Q Consensus 1071 ~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~isL~ 1150 (1432)
|||+|++..+ ++++||||+||+|+++|.+||+||++||. +.++|+|+
T Consensus 997 P~L~r~a~~d----------------------------lk~~dLLw~YY~K~e~~~~AA~VL~rLAt-----~~~~itLe 1043 (1311)
T KOG1900|consen 997 PYLKRMALSD----------------------------LKIFDLLWKYYEKREQFSQAAHVLYRLAT-----SSFDITLE 1043 (1311)
T ss_pred HHHHHhhhcc----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCccHH
Confidence 9999998653 88999999999999999999999999995 55789999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCCC
Q 000546 1151 QRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDS 1230 (1432)
Q Consensus 1151 ~RIeYLsrAv~~aks~~~~~~~~g~~~~~~~~~~l~~Le~kleVaqiQ~~I~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 1230 (1432)
||||||+||+++|||.+. +++. +.+++|+.++|||||||.||.+|+.++.+.+..
T Consensus 1044 qRiEyLsRA~~~~~s~s~-----~s~~-~a~~qf~~~i~dklevA~iQ~dvl~a~~d~~~~------------------- 1098 (1311)
T KOG1900|consen 1044 QRIEYLSRAVGFAKSSSP-----SSSK-VAVGQFLIEIEDKLEVASIQDDVLVAMQDDRID------------------- 1098 (1311)
T ss_pred HHHHHHHHHhhhcccCCC-----chhH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcc-------------------
Confidence 999999999999999986 3333 348999999999999999999999988754322
Q ss_pred CCccchhhHHHHHHHHHHhhhcCCCHHHHHHHhhccCCchhHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHhcCCHHH
Q 000546 1231 SSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKGGIAE 1310 (1432)
Q Consensus 1231 ~~~~d~~~~~~~~~~i~~L~~~Ll~it~LyndyA~p~~l~E~~L~Il~~a~~~~~~D~~lI~~~W~~ii~~~~~~~~~~e 1310 (1432)
+.++++++++||++|+|+|+|||||||||+||||||.|||||+| +|+.+|+++|++||+++++++++..
T Consensus 1099 --------~~~~~el~k~Ld~el~~~t~Lyn~fAdPf~l~Ei~L~I~~~a~y---~D~~~I~~~W~~li~s~~~~~~~~~ 1167 (1311)
T KOG1900|consen 1099 --------ASAANELVKELDGELLSLTQLYNEFADPFDLWEICLSIFKCADY---SDPSLIQETWARLIDSALSQPGITS 1167 (1311)
T ss_pred --------hhHHHHHHHHhccccccHHHHHHhccCcchHHHHHHHHhhhccC---CChHHHHHHHHHHHHHHHhcCCCcH
Confidence 12478999999999999999999999999999999999999999 6999999999999999999885433
Q ss_pred -----HHHHHHHhcccccCCCCccccHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHhcCCCchhhHhhhcCCCCCC
Q 000546 1311 -----ACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXX 1385 (1432)
Q Consensus 1311 -----~~~~i~~LG~~~y~~~~~~FPl~~lv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~~l~~Y~~L~~~~ 1385 (1432)
..++|..++ +.|+..++.||..|.|.+||..+|++ .+|. +..+.+ ||++.|.+|++|++++++.
T Consensus 1168 ~~~~~~~~~I~~~~-~~~~~~~~~~~~~F~i~~l~~~~~~~------~~d~---~~~~~a-~g~~~~~~L~ay~~~~~~~ 1236 (1311)
T KOG1900|consen 1168 EVLKRLGSKISNTL-KVYGKTDVDSEFVFPIAELESKVCEL------FFDE---PKELAA-CGSVIEPFLEAYVSLLKMY 1236 (1311)
T ss_pred HHHhhHHHHHhhhh-hhhcCCcccCchhhhHHHHHHHHHHH------hccc---HHHHhh-hcccHHHHHHHHHHHHHHH
Confidence 245677776 44555559999999999999999997 3333 344444 4899999999999999999
Q ss_pred CCCCCcchhhhcccCccccccccccccccccchhhHHHHHHHH
Q 000546 1386 XXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQAL 1428 (1432)
Q Consensus 1386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1428 (1432)
...|.+..=.+| ...+-..||.||+|+||+..
T Consensus 1237 ~vl~~~~~~~~~-----------~~~~~~ke~~~lv~~~~~~~ 1268 (1311)
T KOG1900|consen 1237 YVLWSLIERSEH-----------LVLVVIKEVTWLVKNWYQVS 1268 (1311)
T ss_pred HHhhhhhcchhh-----------hHHHHHHHHHHHHhchhhhc
Confidence 999998876666 44555589999999999864
No 2
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.4e-176 Score=1551.19 Aligned_cols=1135 Identities=22% Similarity=0.339 Sum_probs=894.4
Q ss_pred ccccchhhhhhhhhhhccccCHHHHHhhccccC-CCCCCCC-CCCCCcccccccccCCHHHHHHHHhcCCcccccccccc
Q 000546 12 VTNAGLVVSDRIGREVASQLDVEEALEASRYAS-HPYTTHP-REWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFP 89 (1432)
Q Consensus 12 ~~~a~~~~~d~~~~d~~~~pdl~~~l~~~~~~~-~~y~~~~-~~w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~mGlFp 89 (1432)
+.-|+.-+++-..||.+ .|.|+|+.- |.. -+|-..- .+|.||.+ ...++|||++++||+++ ||.+.|||||
T Consensus 19 l~la~~~i~~l~~rD~k-tP~Lde~~y---y~~gldyifs~e~gftpfy~-qqv~nIpdrilsq~srt--E~ktdmGif~ 91 (1263)
T COG5308 19 LLLALHWIGMLLKRDTK-TPSLDEAKY---YEEGLDYIFSIETGFTPFYA-QQVMNIPDRILSQISRT--EYKTDMGIFP 91 (1263)
T ss_pred HHHHHHHhhhhhhcccC-CCccccchh---hhcCCcceehhhhCCChHHH-hhhccCcHHHHhhccch--hhhcccchhh
Confidence 56677878777777776 999999841 111 1233222 35999987 58999999999999999 9999999999
Q ss_pred ccceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCC
Q 000546 90 EIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDP 169 (1432)
Q Consensus 90 EI~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~ 169 (1432)
||+|||+|+||+|+||||++++. +..+|+++|+|+.|+||+||||+|++.|+|||+|||..||.||||++++.+
T Consensus 92 elnrcWiT~dnkLiLWnynn~ne-yq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T----- 165 (1263)
T COG5308 92 ELNRCWITNDNKLILWNYNNSNE-YQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKT----- 165 (1263)
T ss_pred hhcceEEEcCCEEEEEecCCCcc-hhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEecccc-----
Confidence 99999999999999999997553 467899999999999999999999999999999999999999999997533
Q ss_pred CceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecCC-CEEEEEEecCCccc-cccceeeeccC-ccccccccccCcc
Q 000546 170 YAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDG-NIYELLYTTGSGWY-KRCRKVCHTAG-VGNVISRWIVPNV 246 (1432)
Q Consensus 170 ~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG-~lYEl~Yq~~~gWf-~rC~Kinht~g-~~S~~~~~llPs~ 246 (1432)
.|+.+++|. ++||+.|+.|.||++.++|||||+|..+ ||||++|+.+++|| +||.|||.|++ +.|+ +|++
T Consensus 166 -~Els~fnTg-l~vsvqGinV~civs~e~GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~l~sl-----lPs~ 238 (1263)
T COG5308 166 -GELSLFNTG-LVVSVQGINVRCIVSEEDGRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSL-----LPSF 238 (1263)
T ss_pred -ceeEEEecc-eEEeccCceeEEEEeccCCcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHHHHhh-----cccc
Confidence 599999986 9999999999999999999999999955 99999999999999 99999999985 5666 9998
Q ss_pred cccC-CCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcE
Q 000546 247 FRFG-AVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSV 325 (1432)
Q Consensus 247 ~~~~-~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 325 (1432)
|.++ ..|.|.|++||++|++||+|+++|+|+.|.|+.+|- .+ +..+..+.+.+++...++.+-.......+|
T Consensus 239 ~~~~ipgetI~Ql~vDqsRg~ly~Lr~kS~Vray~itkngl--~g-----pv~i~~a~i~r~a~~lna~sPlL~pr~~kI 311 (1263)
T COG5308 239 FSFGIPGETIKQLAVDQSRGLLYVLRKKSAVRAYSITKNGL--VG-----PVFISFASIDRNAAILNATSPLLEPRMYKI 311 (1263)
T ss_pred cccCCcccchhheeecccccceeeecccceeeeEeeecccc--cc-----cccccHHHHHhHHhhhccCCcccCCceEEE
Confidence 7555 458999999999999999999999999999998863 22 233455555555443433111445678999
Q ss_pred EEEEecCccCccceEEEEEecCceEEEEecCCCCCCCCCccCcCCCCCCCCCCCceEEEEEcCCCCCCCC---CC---CC
Q 000546 326 VSISPLSTLESKWLHLVAVLSDGRRMYLSTSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVG---GG---LG 399 (1432)
Q Consensus 326 vsI~pIs~~ES~~l~LVAVT~~G~RLYfs~~~~~~~~~~~~~~~g~~~~~~rP~~L~lvhvR~PP~~~~~---~~---~~ 399 (1432)
|+|.||++.|+.++.|||+|++|||+||..+.|.- .--.+++-.|++|||.... +. ..
T Consensus 312 vkIvsi~~~Enn~lflvaiT~tgcRlYf~Gs~gr~----------------si~alkldSvkfpP~S~~~qleq~k~Sr~ 375 (1263)
T COG5308 312 VKIVSIPAYENNQLFLVAITSTGCRLYFDGSRGRV----------------SIVALKLDSVKFPPPSTLMQLEQNKGSRD 375 (1263)
T ss_pred EEEeecccccccceEEEEEeccceEEEEecCccce----------------eeecccccccccCCchHHHHHHhcccCcc
Confidence 99999999999999999999999999999765421 1123566789999986321 00 00
Q ss_pred cccc---cccccC--C---CCcccceeeeeeecCCcEEEeecC------------------CCCCceEEEEecCCCCCCC
Q 000546 400 FGAI---SLAGRN--Q---SDDISLKVETAYYSAGTLVLSDAS------------------PPTMSSLIIVSKDPSSQSY 453 (1432)
Q Consensus 400 ~~~~---~~~~~~--~---~~~~~~~v~~a~Ys~G~~l~~~~~------------------~~~~d~l~~~s~d~~~~~~ 453 (1432)
|+.- .-.+.+ | +.....+..+..-++|.++++... +.++..+|...+|.+...
T Consensus 376 f~~nl~~~~~~~lk~Qp~ss~~~ett~mstiispgiyfs~v~k~~~s~~~~kG~tv~a~s~nv~qhkl~vS~pdygilk- 454 (1263)
T COG5308 376 FYENLFLDRLVMLKRQPNSSDMTETTEMSTIISPGIYFSAVNKRYDSSNTNKGSTVTAISLNVDQHKLWVSIPDYGILK- 454 (1263)
T ss_pred chhhhcccccchhccCccccchhccceeeEEecCCeeeeeehhhccccccCCCceeeecccchhhhhheeccCCcchhc-
Confidence 1000 000000 0 111223334455566666665432 222223333333333221
Q ss_pred CCCCCCCcccccccceeeEEeeecCCeeEEEeecCCCCCcccccccccccccccccccCCCcccccCCccccCCcccccc
Q 000546 454 PTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGESCEKSSGKLWARGDLSTQH 533 (1432)
Q Consensus 454 ~~~~~~~~~~~~~~l~E~~~~~~~~g~~~~i~~v~~~~~~~~~~~~l~~~~e~~~~~~~~~~~~k~~~~~~~~nela~Q~ 533 (1432)
+. ...|.+..+.--+ .|.++.|+.. .|+.|.+| + .++|.||
T Consensus 455 ----------ss-kyven~~flddi~---~Iq~i~prt~---------------lfn~t~tP------q----a~fa~ly 495 (1263)
T COG5308 455 ----------SS-KYVENVVFLDDIE---LIQNIDPRTE---------------LFNQTNTP------Q----ATFALLY 495 (1263)
T ss_pred ----------cc-ceeeeeeeehhhH---HHhhccccch---------------hccccCCC------C----ceeEEee
Confidence 12 2345554332111 2223333322 36777763 2 4899999
Q ss_pred cCCCceEEEEeCCceEEEEEcChHHHHHHHHhhcCCchHHHHHHHhcChHHHHHHHHHHHcCcccCccccCHHHHHHHHH
Q 000546 534 ILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSPRSILEDFFNRFGAGEAAAMCLMLAARIVHSENLISNAVAEKAAE 613 (1432)
Q Consensus 534 ~~ppr~f~vLTn~Gi~i~~~~RPvDiL~~lL~~~~~~~~i~~Ff~~~G~~EacA~~L~LAc~~~~s~~~~~~~v~~~A~~ 613 (1432)
...+-++++||+.-+.++..|.|.+++..|+.+.. .||++||+.|||+|||.++|+...++++.+.+..
T Consensus 496 ~~e~l~Vavlts~~~eiy~yRtpdeifs~li~npl------pf~~syG~aEaCsTaL~~~ck~nksed~~s~al~----- 564 (1263)
T COG5308 496 GNEKLFVAVLTSVEKEIYSYRTPDEIFSGLIGNPL------PFYKSYGEAEACSTALLYYCKLNKSEDVGSLALL----- 564 (1263)
T ss_pred cCccEEEEEEechhhhhhhhcCcHHHhhhhccCcc------hHHHhhhhhhhhhHHHHHHHhhcccchhhhHHHH-----
Confidence 99999999999999999999999999999998886 7999999999999999999998877776554432
Q ss_pred hccC---CC----------C-CCCcccccCccccccccCCCCCccccccccccceeccchhHHHHHHHhhhhhccCCcce
Q 000546 614 AFVD---PR----------L-VGMPQLEGSNALANTRTAAGGFSMGQVVQEAEPVFSGAYEGLCLCASRLLFPLWELPVM 679 (1432)
Q Consensus 614 af~~---~~----------~-~g~p~~~~~~~~~~~~~~~~g~~~g~v~~~~~~~~S~rh~Gl~Ly~sRLlrpiW~~~v~ 679 (1432)
|.. |+ + |+.|.++++- ... + .+.+.| +.|+||+|+++.++|++|.||..+|+
T Consensus 565 -f~~~gipdvvdikpkyyr~sgs~p~lsQs~-f~k----~--~~ld~v------~LSprfyG~allItrl~rnIw~e~Vf 630 (1263)
T COG5308 565 -FLKLGIPDVVDIKPKYYRYSGSVPILSQSR-FNK----P--SSLDFV------RLSPRFYGLALLITRLERNIWLERVF 630 (1263)
T ss_pred -HHhcCCcchhhhhhHHhhhhcCCCccchhh-cCC----c--ccccce------eeccccchHHHHHHHHHHHHHHHHHh
Confidence 321 11 1 3444443210 000 0 134444 99999999999999999999999999
Q ss_pred eeecccccCCceEEEccC-hhhHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcCccccCCCCCCCCCchhhhhhc
Q 000546 680 VVKGDAISENGVVVCRLS-SGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNL 758 (1432)
Q Consensus 680 ~~~~~~~~~~~~i~~~~s-~~~l~~l~~~L~~L~~Fl~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1432)
... .++..-.-.++ ..+++++++.+..|.+||+.|+..+.|+. + |.
T Consensus 631 ~~~----~~k~i~~~~~sik~~ieyylSgi~~L~eFl~~~~~si~~~~---~--------------Pl------------ 677 (1263)
T COG5308 631 SKM----QNKMINIRGASIKIKIEYYLSGIDFLDEFLENNKSSIEGLN---S--------------PL------------ 677 (1263)
T ss_pred hhh----hhhhhhccccchhHHHHHHHhHHHHHHHHHHhccchhhhcC---C--------------cc------------
Confidence 732 11111011122 56899999999999999999887776655 1 10
Q ss_pred cccccccCCCCCCCCcccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHhcCCHHHHHHh
Q 000546 759 FGSYSRNADSNGAGTSNKRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQLLSQH---HVTRLVQGFDANLRQEL 835 (1432)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~r~~~~~~ea~~~E~~Sl~~L~~Ll~~~~Ealsl~~iL~e~---~~~~I~~~L~~~~q~~L 835 (1432)
. ..++.|.|+|++++++|..+++++.|++||+++|.|. .|++|+..-+-+.|+.+
T Consensus 678 --------~--------------SN~eiA~qAesia~nAlll~~qsikeglS~lnvlyed~~~~f~~ivs~~s~diqk~~ 735 (1263)
T COG5308 678 --------I--------------SNDEIAVQAESIANNALLLEYQSIKEGLSLLNVLYEDGVSDFHEIVSSTSIDIQKSC 735 (1263)
T ss_pred --------c--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhh
Confidence 0 1135699999999999999999999999999999995 88899999999999999
Q ss_pred hcCCccccccCcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhhCCCCCCccchhhhhHHHHHHHhhcC-CChHHH
Q 000546 836 VQLTFCQLVCSEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVT-SDSEEK 914 (1432)
Q Consensus 836 ~~ltF~dLv~~~~G~~l~~~Li~aLIn~~i~~~g~~svd~Is~~Lr~~Cpsf~s~dD~~~~KA~E~L~~Ak~~-~~~~~r 914 (1432)
.+|||+|||++++++++.|+++.+|||++|.. | +|+|.+++.||+||||||+++|+++|||.|+|++|++. .|.+++
T Consensus 736 ~~l~F~elFtpnktk~likEil~s~VNrni~s-G-~siey~~~~L~ercgsFcsa~Dvl~fra~EhL~kak~~evd~e~~ 813 (1263)
T COG5308 736 SNLTFSELFTPNKTKKLIKEILKSLVNRNIQS-G-GSIEYLIKTLSERCGSFCSAEDVLYFRALEHLNKAKSREVDLESL 813 (1263)
T ss_pred hcCcHhhhcCCcchHHHHHHHHHHHHhhhccc-C-CcHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhcccccccHHHH
Confidence 99999999999999999999999999999996 6 79999999999999999999999999999999999999 799999
Q ss_pred HHHHHHHHHHHhhCCCCC---CHHHHHHHHHhCcchHHHHHHHHHHHHhcCCCCCcc----ccCcchhhHHHHHHHHHHH
Q 000546 915 ENLAREAFNFLSKVPESA---DLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAF----NDQIDAATREYALVQRQQC 987 (1432)
Q Consensus 915 ~~~L~eAl~Lf~kv~~~~---~L~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al----~~~~~~~~r~~~~~~R~~c 987 (1432)
+++|++|..||++.+..+ +|+.++..|.+++||..+|++.|..|.++|.+|.|. +|.+.+|+|+..|++|..|
T Consensus 814 nnhlk~a~~l~e~~v~~~~~e~lr~av~~m~slNyypk~vnfll~~a~~idkgnqa~~yv~nG~~enDpRk~fydkRi~v 893 (1263)
T COG5308 814 NNHLKNAVQLNESLVAKYNEEGLRYAVTTMISLNYYPKAVNFLLEYAVEIDKGNQACAYVLNGLAENDPRKDFYDKRIKV 893 (1263)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccceeehhHHhhHHhhcccHHHHHHhccccccCchhhHHHHhHHH
Confidence 999999999999998875 688899999999999999999999999999999986 5788999999999999999
Q ss_pred HHHHHHHHHhhhcCCCcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCccccccccCC
Q 000546 988 YEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGP 1067 (1432)
Q Consensus 988 Y~~I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~~l~d~LLei~sP 1067 (1432)
|.+||++|..++.+.... . .+.....|..++.|+|++||||+||||+.+|++|+||+|+||
T Consensus 894 Y~liFEil~svd~~~s~~----------------n---s~lk~~vy~~~m~sndrlFHYcfYDWlv~~~r~d~Li~Idsp 954 (1263)
T COG5308 894 YSLIFEILISVDKENSLR----------------N---SELKCCVYPSAMGSNDRLFHYCFYDWLVFKGRTDRLIKIDSP 954 (1263)
T ss_pred HHHHHHHHHHHHHhhccc----------------c---ccceecchHhHhccccchhhhhhhhhHhhcCccceEEEeccH
Confidence 999999999999753210 0 133344689999999999999999999999999999999999
Q ss_pred ChHHHHhhcCCCchhhhhhcccccccccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCC
Q 000546 1068 DLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAP 1147 (1432)
Q Consensus 1068 ~Le~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i 1147 (1432)
||+|||+|++.++ .+..||||+||+||++|++||+||++||. ++|++
T Consensus 955 filpyLkeka~ss----------------------------lkIsnLlW~Yy~kre~f~eaa~vLy~LAt-----snfd~ 1001 (1263)
T COG5308 955 FILPYLKEKAMSS----------------------------LKISNLLWKYYVKREDFVEAAQVLYELAT-----SNFDV 1001 (1263)
T ss_pred HHHHHHHHhcccC----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCc
Confidence 9999999998775 66899999999999999999999999999 77899
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCCccCCccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCC
Q 000546 1148 TLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSA 1227 (1432)
Q Consensus 1148 sL~~RIeYLsrAv~~aks~~~~~~~~g~~~~~~~~~~l~~Le~kleVaqiQ~~I~~~L~~~~~~~~~~~~~~~~~~~~~~ 1227 (1432)
+|++|||||+||..-+.|+. ..+-+ +....+..++.+++|||-||..|+..
T Consensus 1002 sLeeRIE~L~rAngfc~s~~-----p~sqk-~~~vql~~~v~e~levAsIQdDiL~l----------------------- 1052 (1263)
T COG5308 1002 SLEERIELLRRANGFCSSHV-----PNSQK-HVNVQLFNEVKERLEVASIQDDILRL----------------------- 1052 (1263)
T ss_pred cHHHHHHHHHHhccccccCC-----cchhH-HHHHHHHHHHHHHhhhhhhHHHHHHH-----------------------
Confidence 99999999999952221111 11111 22456677888888888888887753
Q ss_pred CCCCCccchhhHHH-HHHHHHHhhhcCCCHHHHHHHhhccCCchhHHHHHhhhcCCCCCCChHHHHHHHHHHHHHHHhc-
Q 000546 1228 PDSSSTTDANYAKI-VREKAKELSLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSK- 1305 (1432)
Q Consensus 1228 ~~~~~~~d~~~~~~-~~~~i~~L~~~Ll~it~LyndyA~p~~l~E~~L~Il~~a~~~~~~D~~lI~~~W~~ii~~~~~~- 1305 (1432)
...|+||+.. .+|..++||++++++++||||||||++|+|+||.||+||+| +|.++|+.+|+++++.....
T Consensus 1053 ----vr~d~rId~~~r~eL~k~LdG~il~lseLFNdyAdPl~Y~EI~L~Ifkisdy---rd~~vI~~~Weel~~s~~na~ 1125 (1263)
T COG5308 1053 ----VRVDPRIDNNKREELSKQLDGEILSLSELFNDYADPLKYPEIALKIFKISDY---RDKAVIRELWEELMSSHENAI 1125 (1263)
T ss_pred ----hccCCccCchHHHHHHhhcCCeeeeHHHHhhhccccccccceeeEEEeeccc---ccHHHHHHHHHHHHHhhhccc
Confidence 3356777776 55899999999999999999999999999999999999999 69999999999999983221
Q ss_pred --C----CHHHHHHHHHHhcccccCCCCccccHHHHHHHHHHHHHhhccccccCCCchhHHHHHHHhcCCCchhhHhhhc
Q 000546 1306 --G----GIAEACSVLKRVGSHMYPGDGAVLPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYD 1379 (1432)
Q Consensus 1306 --~----~~~e~~~~i~~LG~~~y~~~~~~FPl~~lv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~~l~~Y~ 1379 (1432)
+ +.....+-+..+.-|+..+| .+||+.++.+..+.++|+- +....|||.++|+.| |++.+.|
T Consensus 1126 ~~~vgs~~~esf~s~LsN~likiskse-~vFPi~~l~~iv~~~f~dk-----e~aa~gsv~s~fl~A-GvSh~k~----- 1193 (1263)
T COG5308 1126 ISPVGSSDFESFVSFLSNLLIKISKSE-NVFPIMDLNDIVGDIFCDK-----EMAAGGSVGSAFLSA-GVSHLKV----- 1193 (1263)
T ss_pred CCCCCcccHHHHHHHHhhHhhhhcCCc-ccccHHHHHHHHHHHhcch-----hhhccchHHHHHHhc-chhHHHH-----
Confidence 1 22223333443333444477 9999999999999999983 367889999999999 5755444
Q ss_pred CCCCCCCCCCCcchhhhcccCccccccccccccccccchhhHHHHHHH
Q 000546 1380 QXXXXXXXXYPVELFCRHQTSGYAFFDQCSWYLESGQCLYLQKEWVQA 1427 (1432)
Q Consensus 1380 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1427 (1432)
| |.++.+||. +....++...||.||||+||+.
T Consensus 1194 --y------yiL~elie~--------s~~~~~~~~KEmtwLikewy~s 1225 (1263)
T COG5308 1194 --Y------YILEELIEQ--------SKDRLFFLIKEMTWLIKEWYHS 1225 (1263)
T ss_pred --H------HHHHHHHhc--------ccchHHHHHHHHHHHHHHHccc
Confidence 4 555556676 5556666779999999999974
No 3
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=100.00 E-value=6.7e-52 Score=502.60 Aligned_cols=402 Identities=30% Similarity=0.432 Sum_probs=186.9
Q ss_pred CCCCcccccccccCCHHHHHHHHhcCCccccccccccccceeEEEEeCeEEEEecC-------CCCCCCccc-cCCCcce
Q 000546 53 EWPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFD-------KWDGQCPEY-TGEEQVI 124 (1432)
Q Consensus 53 ~w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~mGlFpEI~rAW~tIDn~L~LW~Y~-------~~~~~~~~f-d~~~~~I 124 (1432)
.|.+|.+ .+..+||++|+|+++.+ ++.|.||+||||+|||+++||+||+|||. ++.+ +..| ++.++.|
T Consensus 2 ~~~~~~~-~~~~~lP~~v~e~~~~~--~~~~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~~~-~~~~~~~~~~~i 77 (422)
T PF08801_consen 2 KNDPFTV-SKLPPLPDEVFEQLNSA--QSPCSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDGSD-FPLFDDGSSSSI 77 (422)
T ss_dssp ------E-E-SS---HHHHHHHHH---TTS-EEEEE-TTSEEEEEETTEEEEEE--SS--GG--EEE-EE----------
T ss_pred Cccccce-eecCCCCHHHHHHhhcc--ccceEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcccc-cceecCCCCCCC
Confidence 3778876 59999999999999999 99999999999999999999999999994 3333 3568 9999999
Q ss_pred EEEEeeccCCC--cccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEE-EEEecCCCcE
Q 000546 125 CAVGLAKSKPG--IFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMT-CITCTDKGRI 201 (1432)
Q Consensus 125 ~aV~LVkPKpG--VF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~-~I~gT~~GRI 201 (1432)
.+|+||+||+| +|.++|+|+|+++|+.+|.|+||+|++ +++++ +++.+.++.+. .|++|++|||
T Consensus 78 ~~v~lv~p~~G~v~f~~~I~~~l~~~t~~~i~l~gv~~~~------------l~~~e-~~~~~~~~~~~~~I~~ts~GRi 144 (422)
T PF08801_consen 78 PGVGLVKPKTGRVVFWESISHLLVLATPSQISLLGVSYSE------------LLSGE-LSTSLTNVEPSGFIVSTSTGRI 144 (422)
T ss_dssp -SEEEEE-TT-EEEEES-TT-TT--EEEE-------------------------------EEEEEEETTTEEEEETT--E
T ss_pred ceEEEEEcCCCCEEecccchhhhhcCccccccccccceee------------ecCCc-eEEECCCCceEEEEEECCCCeE
Confidence 99999999999 999999999999999999999999963 67765 66666555444 5999999999
Q ss_pred EEeecCC--CEEEEEEecCCccccccceeeecc-CccccccccccCcccccCCCC-ceEEEEEeCCCceEEEEcCCCeEE
Q 000546 202 LLAGRDG--NIYELLYTTGSGWYKRCRKVCHTA-GVGNVISRWIVPNVFRFGAVD-PIVELVFDNERQLLYARTEEMKLQ 277 (1432)
Q Consensus 202 F~gG~DG--~lYEl~Yq~~~gWf~rC~Kinht~-g~~S~~~~~llPs~~~~~~~d-~Ivqi~vD~sR~iLYtLs~~s~I~ 277 (1432)
|++|.+| ++|||.|+..++ ||+|+||+. ++.+. ++|+ +...+ .|++|++|++|++||+|+++|+|+
T Consensus 145 f~~~~~~~~g~~~l~y~~~~~---~~~~i~~~~~~~~~~----~~p~---~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq 214 (422)
T PF08801_consen 145 FFLGIRDSNGKYELSYQQLSG---RCSKINHTSSSIFSS----LLPS---FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQ 214 (422)
T ss_dssp EEEEE-TTS-EEEEE-TT---------------------------------------EEEEEEETTTTEEEEEESSE-EE
T ss_pred EEEeCCCCCCcEEEEEEcCcC---CccccccccCceecc----ccCC---cccchhceeeEEecCCcCEEEEEeCCCcEE
Confidence 9999977 999999998888 699999997 55344 3776 23444 499999999999999999999999
Q ss_pred EEEeCCCCCCCcceeeeeccccc---ccccccCCcccccccCCCCCCCCcEEEEEecCccCccceEEEEEecCceEEEEe
Q 000546 278 VFVLGPNGDGPLKKVAEERNLFN---QRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRMYLS 354 (1432)
Q Consensus 278 vy~Lg~~g~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~IvsI~pIs~~ES~~l~LVAVT~~G~RLYfs 354 (1432)
+|+|+.+|..+ .+...+...+. +..+.... .++ ......++|++|+||+..|+..++|||+|++|+|+||+
T Consensus 215 ~w~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~----~~~-~~~~~~~~ildi~~i~~~~s~~~~Lva~t~~g~r~y~~ 288 (422)
T PF08801_consen 215 VWDLGPGGSTL-VSKVDIQEIILSSLQSAIPRSA----SSS-DLSSISFKILDIHPISAGESSLLVLVAVTSNGCRLYFS 288 (422)
T ss_dssp EEEE-SS-EEE-EEEEEHHHHHHHHHHHHHHTTS----HHH-HHTT-EEEEEEEEEETTEEEEEEEEE-TTSSS-BEEEE
T ss_pred EEEEeCCCCce-eeehhHHHHHHHHHHHhhhhhh----hcc-cccCCCeEEEEEEEeCccCceeEEEEEeccCCcEEEEE
Confidence 99999866544 32112211111 11111100 000 23456899999999999999999999999999999999
Q ss_pred cCCCCCCCCCccCcCCCCCCCCCCCceEEEEEcCCCCCCCCCCCCcccccccccCCCCcccceeeeeeecCCcEEEeecC
Q 000546 355 TSASSGNSGTVGGVGGFNNHHFRPSCLKVVTTRPSPPLGVGGGLGFGAISLAGRNQSDDISLKVETAYYSAGTLVLSDAS 434 (1432)
Q Consensus 355 ~~~~~~~~~~~~~~~g~~~~~~rP~~L~lvhvR~PP~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~Ys~G~~l~~~~~ 434 (1432)
+...+ .+|++|+|+|+|.||..... ....+.+....+..++.++|++|+++++...
T Consensus 289 ~~~~~----------------~~p~~L~L~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 344 (422)
T PF08801_consen 289 LTSIS----------------SAPSSLTLIHVRSPPNSFSI--------SSTHPLNSYSSPTTVSSAFYSPGLFLPAPGD 344 (422)
T ss_dssp EEEE------------------------------BTTB--S---------EEEEE-S---B---GG-G---EEE---SSS
T ss_pred Eeeec----------------ccccccceeeeccCCCccee--------ecceecccCCCCccccceEecCCEEEeccCC
Confidence 86531 27999999999887753211 1111222334567888899999999888875
Q ss_pred CCCCceEEEEecCCCCCCCCCCCCCCcccccccceeeEEeeecCCeeEEEeecCCCCCcccccccccccccccccccCCC
Q 000546 435 PPTMSSLIIVSKDPSSQSYPTGSLGTSARISRALRESVTSLPVEGRMLSVTDILPLPDTATTVQSLYSELEFCGFEISGE 514 (1432)
Q Consensus 435 ~~~~d~l~~~s~d~~~~~~~~~~~~~~~~~~~~l~E~~~~~~~~g~~~~i~~v~~~~~~~~~~~~l~~~~e~~~~~~~~~ 514 (1432)
.. +.+|..+.+..................+...|....++.+-. +++. +.+
T Consensus 345 ~~--~~v~~~a~~~~~~~~~~~~~~~~~~~~~~~~Ed~i~l~~~~~-----------------------~~i~---~~~- 395 (422)
T PF08801_consen 345 TA--FVVFVSAVVMGFLDSSTSQSLVDSSYLPRLWEDAIRLRSDDD-----------------------VEII---GSG- 395 (422)
T ss_dssp SE--SEEEEEE-TT---TT----------------EEEE--G--GG-------------------------EE---EEE-
T ss_pred CC--EEEEEcCCccccCCCCCccccccccccccccceEEEccCccc-----------------------ceee---ccc-
Confidence 33 577777877763321110000001112334455554443200 0000 001
Q ss_pred cccccCCccccCCcccccccCCCce-EEEEeCCceEE
Q 000546 515 SCEKSSGKLWARGDLSTQHILPRRR-IVVFSTMGMME 550 (1432)
Q Consensus 515 ~~~k~~~~~~~~nela~Q~~~ppr~-f~vLTn~Gi~i 550 (1432)
+. +.+++||..||++ |+++||+|+++
T Consensus 396 ---------~~-~~~~~q~~~~~~~~~~~l~~~Gv~~ 422 (422)
T PF08801_consen 396 ---------TE-NPLASQHDHPPPACFLLLTNFGVHR 422 (422)
T ss_dssp ---------E-----------ETTEEEEEETTTEEE-
T ss_pred ---------cc-ccccccccCCCCCEEEEEcCccccC
Confidence 11 2299999999998 99999999985
No 4
>PF03177 Nucleoporin_C: Non-repetitive/WGA-negative nucleoporin C-terminal; InterPro: IPR007187 This is the C-terminal half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterised by the FG repeat and the other is represented by this family, which lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ].; PDB: 3I5P_A 3I5Q_B 3I4R_B 3CQC_B 3CQG_B 3KFO_A.
Probab=100.00 E-value=2.2e-51 Score=517.62 Aligned_cols=518 Identities=29% Similarity=0.331 Sum_probs=360.1
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcCccccCCCCCCCCCchhhhhhccccccccCCCCCCCCc
Q 000546 695 RLSSGAMQVLENKIRSLEKFLRCIRNQRRGLYGYVAGMGDLSGSILYGTGADSVAGDQSLIRNLFGSYSRNADSNGAGTS 774 (1432)
Q Consensus 695 ~~s~~~l~~l~~~L~~L~~Fl~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1432)
.....+|+..+..|..|.+||++|....++.. +|
T Consensus 3 ~~~~~~L~~r~~~l~~L~~Fl~~~~~~~~~~~-----------------~~----------------------------- 36 (586)
T PF03177_consen 3 NSLEQQLEDRQKRLQNLIEFLKRNGPLIRLTS-----------------GP----------------------------- 36 (586)
T ss_dssp ---SHHHHHHHHHTTSSSHHHHTT-------------------------SS-----------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCcccccc-----------------Cc-----------------------------
Confidence 45577899999999999999988753332211 00
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcc-----------HHHHHhcCCH-HHHHHhhcCCcc
Q 000546 775 NKRQRLPYSPAELAAIEVRAMECIRQLLLRSAEALFLLQ-LLSQHH-----------VTRLVQGFDA-NLRQELVQLTFC 841 (1432)
Q Consensus 775 ~~~~r~~~~~~ea~~~E~~Sl~~L~~Ll~~~~Ealsl~~-iL~e~~-----------~~~I~~~L~~-~~q~~L~~ltF~ 841 (1432)
+........++..|.++|+++++|++++.|+++||. ++++|+ ++.+.-.+++ +.+..|..++|+
T Consensus 37 ---~~~~~~~~~~l~~e~Ekl~a~~~L~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~v~~~~~l~~~~~~ 113 (586)
T PF03177_consen 37 ---RSLSRQTRWALLEEAEKLAAAIALWKRQNEALSLWQRLLSDHQKARINTSQSEDDTVRDFFLSDVSRIEELFPLLFE 113 (586)
T ss_dssp ------------HHHHHHHHHHHHTTTTTS---TTHHHHHHHHH-HTTS----SS--S---HHHHTT-GGGTSSTTTTSS
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccccchhhhhcCcHHHHHHHHHHHHH
Confidence 000001235899999999999999999999999999 999976 8888888877 999999999999
Q ss_pred cccc-----CcchhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhhCCCCCCccchhhhhHHHHHHHhhcCC--ChHH-
Q 000546 842 QLVC-----SEEGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTS--DSEE- 913 (1432)
Q Consensus 842 dLv~-----~~~G~~l~~~Li~aLIn~~i~~~g~~svd~Is~~Lr~~Cpsf~s~dD~~~~KA~E~L~~Ak~~~--~~~~- 913 (1432)
+|++ +..|+.++..|+.++|+.++..++..+++.++..|+.+||+||+.+|+++|||.|.+..|+... +...
T Consensus 114 ~l~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~a~e~~w~a~~~~~~~~~~l 193 (586)
T PF03177_consen 114 DLKTPLSSSSSSGKVLAKLLIASLIYLAILENAFKYRDYNSEQLQLRCPSFFSLEDVLCYKAEELPWTARTALLSSLEDL 193 (586)
T ss_dssp SSSSSS-------TTSSHHHHHHHHHHHTTHHHHTTTT------------------HHHHHHHHHHHHHHH------HCT
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcCCccHHHHHHHHHhhHhhccccccchHHH
Confidence 9999 4458999999999999999986533389999999999999999999999999999999999886 4555
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHH---HHHHHhCcchHHHHHHHHHHHHhc-CCCCCcccc----Ccchhh---HH---H
Q 000546 914 KENLAREAFNFLSKVPESADLRTV---CRRFEDLRFYEAVVRLPLQKAQAL-DPAGDAFND----QIDAAT---RE---Y 979 (1432)
Q Consensus 914 r~~~L~eAl~Lf~kv~~~~~L~~v---c~~~~~l~fy~GvVeL~L~~A~~~-Dp~~~al~~----~~~~~~---r~---~ 979 (1432)
++.++++|+++|+++++++++..+ |.+|.+++||.|+|+|||.+|++. ||.+.+... .+.++. |. .
T Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~l~l~~a~~~~d~~~~~~~~~~~~~~~~~~~~~r~~~i~ 273 (586)
T PF03177_consen 194 FEQLLNEALRLFEKWAESIPLENLQEACQQFISLQYYEGVVELLLYFARKLWDPMQEALSYYEEGELEEDYESQRPEWIE 273 (586)
T ss_dssp HHHHHHHHH---------HHHCCCCCCCCHHHHCCHCCCHHHHHHHHHHHHHHHCTCHHCCCHHTTCCCCCHHTTCTTSC
T ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccchhhHHhhcHHhhhhhhhHHHHH
Confidence 889999999999999999876665 999999999999999999999999 999988642 232222 22 3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhc---C
Q 000546 980 ALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDL---G 1056 (1432)
Q Consensus 980 ~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~---~ 1056 (1432)
.|.+|..||+.++++++++.+-..-.+. .. .......+.....+++...+..++|+.||++||+|||++ |
T Consensus 274 ~l~~r~~~~~~a~~lae~~~d~~~lv~~----~~---~~~~~~~~~~~~~~~~~~y~~~~~d~~Fa~~Ly~wyi~~~~~~ 346 (586)
T PF03177_consen 274 ALAKRIGCYEEAFELAEKYHDFSSLVEL----CP---DNQLDSLEASEIKERIYQYFEKFGDELFAFFLYDWYIENGKIG 346 (586)
T ss_dssp CHHHHHCHCCCHHHHHHHTS--HHHHHH----H-----------HHHSS-TTCHHHHCCS-SCHHHHHCHHHHHHT---T
T ss_pred HHHHHhhhHHHHHHHHHHHhhhhhhhhh----hh---cccccccchhHHHHHHHHHHHHCCchHHHHHHHHHHHHhccch
Confidence 5899999999999999997642110000 00 011222334445566788899999999999999999999 8
Q ss_pred CccccccccCCChHHHHhhcCCCchhhhhhcccccccccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHHHHHHHHHHh
Q 000546 1057 LENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLA 1136 (1432)
Q Consensus 1057 l~d~LLei~sP~Le~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA 1136 (1432)
...+|++..+|||++||++++. ++.||+|+||.++++|.+||++|.+||
T Consensus 347 ~l~~l~~~~~~~L~~fL~~~~~-------------------------------~~~~L~Wi~~~~~~~y~~AA~~L~~lA 395 (586)
T PF03177_consen 347 KLLELLEIYSPFLERFLRRNPK-------------------------------KYPDLLWIYYIRNGQYSKAAETLLQLA 395 (586)
T ss_dssp -GGGGGG--GCCCHHHHHC--T--------------------------------HCCCHHCHHHHTTSHHHHHHHHHHHH
T ss_pred HHHhhcccCCHHHHHHHHHHHh-------------------------------hcCCcchHHHHhccCHHHHHHHHHHHH
Confidence 9999999999999999999642 378999999999999999999999999
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCccCCccccccchhhhhhHhHHHHHHHHHHHHH-HHHHHHhhcccc
Q 000546 1137 ERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAVLRFQTKIKD-ELEAIASSLETS 1215 (1432)
Q Consensus 1137 ~~~s~~s~~~isL~~RIeYLsrAv~~aks~~~~~~~~g~~~~~~~~~~l~~Le~kleVaqiQ~~I~~-~L~~~~~~~~~~ 1215 (1432)
.+++.+..++ +++|++|+.+|+.++++.. + + ++.+.+++++++++|+|+++|.+|.+ .+..+...
T Consensus 396 ~~~~~~~~~~--~~~r~~ls~~kL~~~a~~~-~----~---~~~~~~~l~~i~~~L~v~~iQ~~l~~~~~~~~~~~---- 461 (586)
T PF03177_consen 396 QREADSVSFP--LEKRIELSLAKLAALASSE-S----D---SPEDQELLEEIEDELDVIRIQERLYEELLEAISSA---- 461 (586)
T ss_dssp HH-HSSHSS---HHHHHHHHHHHHHHHHS---H----H----H-HHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTC----
T ss_pred hhhccccchh--hHHHHHHHHHHHHHhhccc-c----C---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 9877521222 9999999999999998874 1 0 12268999999999999999999998 44432110
Q ss_pred ccccccccCCCCCCCCCccchhhHHHHHHHHHHhhhcCCCHHHHHHHhhccCCchh------------------HHHHHh
Q 000546 1216 VDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYNEYAVPFELWE------------------ICLEML 1277 (1432)
Q Consensus 1216 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~L~~~Ll~it~LyndyA~p~~l~E------------------~~L~Il 1277 (1432)
.....+ ..++++++|++. ++++||++||.|+++|+ +||.+.
T Consensus 462 ---------------~~~~~~----~~~~~l~~L~~~--~~~~l~~~~~~~~~~lidlltl~~~~~~f~~AL~vl~l~~~ 520 (586)
T PF03177_consen 462 ---------------IISDQP----AKQEALKQLDGD--DLTQLYNNYALPPELLIDLLTLIDNSEDFYKALKVLSLAIN 520 (586)
T ss_dssp ------------------GHH----HCCHHHHHHHHC--HHHHHHSSTTTTHHHHHHHCTTCTSCCHHHHHCCCHHHHHH
T ss_pred ---------------ccccch----hHHHHHHHhccc--chhhHhhccCCCHHHHHHHhhhhhhhhhhhhHHHHHHHhhc
Confidence 001010 136899999999 99999999999999999 999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHHHHHhc----C-C----HHHHHHHHHHhcccccCCCCccccHHHHHHH
Q 000546 1278 YFANYTGDADSSIIRETWARLIDQALSK----G-G----IAEACSVLKRVGSHMYPGDGAVLPLDTLCLH 1338 (1432)
Q Consensus 1278 ~~a~~~~~~D~~lI~~~W~~ii~~~~~~----~-~----~~e~~~~i~~LG~~~y~~~~~~FPl~~lv~~ 1338 (1432)
+++++ ++..+|+.+|+++|.+.... . . ......+.+.|++.+++.. .+||+++++++
T Consensus 521 ~~~~~---~~~~l~~~iW~r~l~~ddW~~~~~~~~~~d~~~~~~~~~t~L~~~l~~~~-~~~~~~~~~~~ 586 (586)
T PF03177_consen 521 HCSDE---RDESLIRLIWRRLLLRDDWAAINNTSDKSDEQIELSLKNTALFKTLSSSE-NDFPLEFIIPH 586 (586)
T ss_dssp HCTCH---HHHHHHHHHHHHHHHHHT-HHTSTTS-HHHHHHHHHHHHHCHHHHHTT-T-TTS-HHHHHH-
T ss_pred ccccc---chHHHHHHHHHHHHHhhhhHhhcccCcCccHHHHHHHHHHHHHHHHHhCC-CcCCHHHhcCC
Confidence 99999 69999999999999996521 1 1 2234678899998888877 99999999975
No 5
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=2.2e-07 Score=120.26 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=81.1
Q ss_pred cccCCcccccccCCCceEEEEeCCceEEEEEcChHHHHHHHHhhcCC--chHHHHHHHhcChHHHHHHHHHHHcCcccCc
Q 000546 523 LWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLFELNSP--RSILEDFFNRFGAGEAAAMCLMLAARIVHSE 600 (1432)
Q Consensus 523 ~~~~nela~Q~~~ppr~f~vLTn~Gi~i~~~~RPvDiL~~lL~~~~~--~~~i~~Ff~~~G~~EacA~~L~LAc~~~~s~ 600 (1432)
.+....+.-+ .||++++.||++|++.....|+||.|++.+.+..+ .+..+.||+.|-..++|.+++.++| ++
T Consensus 451 ~~e~~~~~e~--~~~~~~i~lt~q~~~~~~~~~~v~~l~~~~~s~~~~~~~~t~~~~~~~~~R~~~~v~~~li~----~~ 524 (1311)
T KOG1900|consen 451 YTEQPASVED--VPPKEIILLTNQDIYTSAPLRYVNVLASQYLSEPGKDAELTERSIYLYRYRRPIVVFLSLIK----MP 524 (1311)
T ss_pred ccccccchhc--cCccceeeeecchhhhhhhhhhHHHHHHHHhcCCchhhhhccceeEEEeeccHhHHHHHHhc----CC
Confidence 3333344444 89999999999999999999999999998888776 6789999999999999999999999 66
Q ss_pred cccCHHHHHHHHHhccCCCCCCCccccc
Q 000546 601 NLISNAVAEKAAEAFVDPRLVGMPQLEG 628 (1432)
Q Consensus 601 ~~~~~~v~~~A~~af~~~~~~g~p~~~~ 628 (1432)
...+..+.-|++.+|. +|++.++.+.
T Consensus 525 ~~~~~~v~~~~~l~~~--~y~~~~~~~s 550 (1311)
T KOG1900|consen 525 LPFARYVDIWEALATA--LYGRELYEKS 550 (1311)
T ss_pred CcccCchHHHHHHHHH--hhcchhhhhh
Confidence 6667777788888887 5677776543
No 6
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.0046 Score=79.42 Aligned_cols=242 Identities=19% Similarity=0.180 Sum_probs=150.9
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHhcCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCCCCCCCCC
Q 000546 936 TVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAG 1015 (1432)
Q Consensus 936 ~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~~~~~~~ 1015 (1432)
+-.+-+.++++|+.++++|=.. .=|+-...+++.++.+.
T Consensus 777 dwlq~L~~vg~~e~Ai~iAEKY----------------------------~DfqsLV~lcdqld~kd------------- 815 (1128)
T KOG4121|consen 777 DWLQVLCKVGQYEQAIQIAEKY----------------------------KDFQSLVQLCDQLDQKD------------- 815 (1128)
T ss_pred HHHHHHHhcchHHHHHHHHHHh----------------------------hhHHHHHHHHHhhCchh-------------
Confidence 3566778889999999875221 11666777777776321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCccccccccC---CChHHHHhhcCCCchhhhhhcccccc
Q 000546 1016 PRSALDPASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGG---PDLVPFLQSAGREPIQEVRAVSGITS 1092 (1432)
Q Consensus 1016 ~~~~~~~~~~~~~~~~i~~~al~S~DelFH~~LYdWLi~~~l~d~LLei~s---P~Le~yL~~~~~~~~~~~~~~~~~~~ 1092 (1432)
.+ +-|...+.--++-|-..||+|++++|...+||.-.- ..|-.|++++
T Consensus 816 ---rL----------q~y~~~~~e~~~eFs~~lf~y~ve~~k~~eLl~~f~~~~s~L~qFf~~~---------------- 866 (1128)
T KOG4121|consen 816 ---RL----------QDYETFFNEYPKEFSFFLFEYLVEHGKLGELLFRFPQQHSVLIQFFQER---------------- 866 (1128)
T ss_pred ---HH----------HHHHHHHHhhhHHHHHHHHHHHHhhchHHHHHhcchhhHHHHHHHHhhc----------------
Confidence 11 125556666668899999999999999999985422 2455666552
Q ss_pred cccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCc
Q 000546 1093 AASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSL 1172 (1432)
Q Consensus 1093 ~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~isL~~RIeYLsrAv~~aks~~~~~~~ 1172 (1432)
+|-.|.|-.-..+|+|.+|+++|++||..... -+.+.+--|+.|.+.+-.
T Consensus 867 -----------------d~~~lsWi~ei~nGdy~rAs~~L~~la~~e~k------~vakK~s~LsLaKL~s~a------- 916 (1128)
T KOG4121|consen 867 -----------------DYGHLSWIQEILNGDYERASNTLLNLAVDEEK------KVAKKESHLSLAKLASLA------- 916 (1128)
T ss_pred -----------------cccccHHHHHHhcCcHHHHHHHHHHhcchHHH------HHhhHHHHhhHHHHHHHh-------
Confidence 37799999999999999999999999995432 277888888888764322
Q ss_pred cCCccccccchhhhhhHhHHHHHHHHHHHHHHHHHH---HhhccccccccccccCCCCCCCCCccchhhHHHHHHHHHHh
Q 000546 1173 VGSTRGAFDNGLLDLLEGKLAVLRFQTKIKDELEAI---ASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKEL 1249 (1432)
Q Consensus 1173 ~g~~~~~~~~~~l~~Le~kleVaqiQ~~I~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~L 1249 (1432)
.+.|++|+.++||++..+ +.-+ .+.+.. ..--+++..+. .+....+ +=.++++|
T Consensus 917 -------------~~~ee~l~~~~Iqki~a~-~~~Vd~~q~q~~k-~qlv~s~~~nl---s~~si~~-----Vl~~veel 973 (1128)
T KOG4121|consen 917 -------------VEIEENLLILTIQKIQAN-LDLVDAEQSQGNK-EQLVESICKNL---SNGSIRP-----VLNLVEEL 973 (1128)
T ss_pred -------------hhhhhhHHHHHHHHHHhc-ccHHHHHHhhccH-HHHHHHHhcCc---ccchhhH-----HHHHHHHH
Confidence 257889999999988554 2111 111000 00000111110 0000001 11133343
Q ss_pred -hhcCCCHHHHHHHhhccCCchhHHHHHhhhcCCCCC-CChHHHHHHHHHHHHH
Q 000546 1250 -SLDLKSITQLYNEYAVPFELWEICLEMLYFANYTGD-ADSSIIRETWARLIDQ 1301 (1432)
Q Consensus 1250 -~~~Ll~it~LyndyA~p~~l~E~~L~Il~~a~~~~~-~D~~lI~~~W~~ii~~ 1301 (1432)
...+...++|-+.|- =+.+-|+.|.-+...++.++ +=-+++...|.+++-+
T Consensus 974 Is~~v~e~~e~ve~~s-f~~~r~~al~~le~~~~~~~~~l~dd~~k~l~~~v~R 1026 (1128)
T KOG4121|consen 974 ISLYVVELNELVEEYS-FLDDREKALIELELLDEDLNRLLNDDVKKFLCALVWR 1026 (1128)
T ss_pred HhHhhhhHHHHHHHHh-hhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 344777888887665 46777888888888877211 0145666666666654
No 7
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.36 Score=63.56 Aligned_cols=158 Identities=21% Similarity=0.231 Sum_probs=98.6
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHhcCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCCCCCCCCC
Q 000546 936 TVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAG 1015 (1432)
Q Consensus 936 ~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~~~~~~~ 1015 (1432)
.|++.|.+-+--++|++|+-.+-+..++++.. .. -.|.+||+-.-.+-
T Consensus 988 kv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps----------~a------~~~t~vFnhhldlg---------------- 1035 (1480)
T KOG4521|consen 988 KVVRLLEEHNHAEEVCQLAVKAIENLPDDNPS----------VA------LISTTVFNHHLDLG---------------- 1035 (1480)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcchh----------HH------HHHHHHHHhhhchh----------------
Confidence 47888888888899999988877777765532 11 12335544332221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCccccccccCCCh------HHHHhhcCCCchhhhh
Q 000546 1016 PRSALDPASRKKYICQIVQLGVQSPDR----IFHEYLYRTMIDLGLENELLEYGGPDL------VPFLQSAGREPIQEVR 1085 (1432)
Q Consensus 1016 ~~~~~~~~~~~~~~~~i~~~al~S~De----lFH~~LYdWLi~~~l~d~LLei~sP~L------e~yL~~~~~~~~~~~~ 1085 (1432)
+..++|...++-.|+ .....|---|.+.|-..-|-+ =||+ |.||.+++..+
T Consensus 1036 ------------h~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~--fpfigl~~eve~~l~esaaRs----- 1096 (1480)
T KOG4521|consen 1036 ------------HWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALAT--FPFIGLEQEVEDFLRESAARS----- 1096 (1480)
T ss_pred ------------hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhh--CCccchHHHHHHHHHHHHhhc-----
Confidence 111223333333332 111222333445566655555 4554 67888765432
Q ss_pred hcccccccccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCC-CHHHHHHHHHHHHHH
Q 000546 1086 AVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAP-TLDQRRQYLSNAILQ 1162 (1432)
Q Consensus 1086 ~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~i-sL~~RIeYLsrAv~~ 1162 (1432)
++ -.+..+++||.-||.+|+||-+||-+.|.-|+|=..++.-.. -|++|...|.-|+.|
T Consensus 1097 -~~-----------------~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~~~Lekr~ncllaaLNc 1156 (1480)
T KOG4521|consen 1097 -SP-----------------SMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTPELLEKRRNCLLAALNC 1156 (1480)
T ss_pred -Cc-----------------cccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCHHHHHHhhhHHHHHHHH
Confidence 22 244668999999999999999999999999997654333333 699999999988766
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.68 E-value=0.87 Score=49.94 Aligned_cols=148 Identities=15% Similarity=0.221 Sum_probs=88.2
Q ss_pred cccccccccceeEEEE--eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeee
Q 000546 83 ALCGIFPEIRRAWASV--DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCC 160 (1432)
Q Consensus 83 ~~mGlFpEI~rAW~tI--Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~ 160 (1432)
..+-+.|. ++-.++- |+.+++||...+... ..+......|.++...+ +=+++++.++.-.|.++-+.-
T Consensus 139 ~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~--------~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 139 NSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSP--------DGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred EEEEEcCc-CCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECC--------CcCEEEEecCCCcEEEEECCC
Confidence 34444555 4444443 899999999755433 34555455666666532 123455554455555554321
Q ss_pred cCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCcccccc
Q 000546 161 SGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVIS 239 (1432)
Q Consensus 161 ~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~ 239 (1432)
. ..+..+ . ...-.++++.-+++|++|.+|. ||.|+-..... ......
T Consensus 209 ~---------~~~~~~-----~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~--------------~~~~~~-- 256 (289)
T cd00200 209 G---------KCLGTL-----R--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT--------------GECVQT-- 256 (289)
T ss_pred C---------ceecch-----h--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC--------------ceeEEE--
Confidence 0 111111 1 1122577788788899999998 99776554321 000011
Q ss_pred ccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000546 240 RWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1432)
Q Consensus 240 ~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~ 280 (1432)
++ .....|..+.+++..+.|++-+.++.|.+|+
T Consensus 257 ---~~-----~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 ---LS-----GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---cc-----ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 11 2356789999999999999999999999995
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.04 E-value=3.6 Score=45.01 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=88.5
Q ss_pred cccccccccceeEEEE-eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeec
Q 000546 83 ALCGIFPEIRRAWASV-DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCS 161 (1432)
Q Consensus 83 ~~mGlFpEI~rAW~tI-Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~ 161 (1432)
..+-+-|.=++....- |+.+++||+..+... ..+.+....|..+.... +=+++++.+..-.|.++-+.-.
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~--------~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASA--------DGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECC--------CCCEEEEEcCCCeEEEEEcCcc
Confidence 3444445434444433 899999999765422 23334444554444322 1145555555666666654211
Q ss_pred CCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccc
Q 000546 162 GAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISR 240 (1432)
Q Consensus 162 ~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~ 240 (1432)
..+ ..+....-.+.++.-+++|+++++|. ||.|+-..... ......
T Consensus 84 ---------~~~-------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~--- 130 (289)
T cd00200 84 ---------ECV-------RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--------------GKCLTT--- 130 (289)
T ss_pred ---------cce-------EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--------------cEEEEE---
Confidence 011 12222333678888888899999888 99766544221 000000
Q ss_pred cccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 241 WIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 241 ~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
++ ...+.|..+.+++..++|++-+.++.|.+|++.
T Consensus 131 --~~-----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 131 --LR-----GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred --ec-----cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence 11 235678899999988999999889999999985
No 10
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.42 E-value=1.4 Score=56.40 Aligned_cols=178 Identities=15% Similarity=0.252 Sum_probs=70.8
Q ss_pred eCeEEEEecCCCCCCCccccCCCcce----EEEEeeccCC-----Cc-ccccce-EEEEEeecceEEEEEeeecCC----
Q 000546 99 DNSLFLWRFDKWDGQCPEYTGEEQVI----CAVGLAKSKP-----GI-FVEAIQ-YLLILATPVELILVGVCCSGA---- 163 (1432)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I----~aV~LVkPKp-----GV-F~~~I~-~lLvvaT~~eI~Llgvs~~~~---- 163 (1432)
-++.++|+.-+..+. .+..+.+-.+ ..|-+.=|.+ || |.+.-. .++|++|+...+++-+.+...
T Consensus 43 ~~r~i~WRvl~~~~~-LeL~~~s~~~~~~~~~lri~Fp~~~~~~~~v~~~~~~~~~~~v~v~t~s~~~~~l~l~~~~~~~ 121 (547)
T PF11715_consen 43 RNRFILWRVLNDGDV-LELREVSLDKNLLNNTLRIHFPSPIILPGCVAFSETEDHVLIVFVTTSSGHLYTLTLPSDFFRS 121 (547)
T ss_dssp -------------------------------EEEEE-SS-BTT-GGGGEEEEE-SEEEEEEEBTTS-EEEEEEEHHHHHS
T ss_pred ccccccccccccccc-cccccccccccccCCeEEEECCCcCeeCCeEEEEECCCCEEEEEEEeCCCEEEEEECCChhhcc
Confidence 367899997532322 2333222211 4444443322 34 555454 788888999988888887531
Q ss_pred -CCCC-CCCceeEEeeCCCeEeecCCeeEEEEEec-CCCcEEEeecCCCEEEEEEec----CCccccccceeeec-cCcc
Q 000546 164 -GDGT-DPYAEISLQPLPEYTVPSDGVTMTCITCT-DKGRILLAGRDGNIYELLYTT----GSGWYKRCRKVCHT-AGVG 235 (1432)
Q Consensus 164 -~~~~-~~~~el~L~~~~~~sv~tdg~~v~~I~gT-~~GRIF~gG~DG~lYEl~Yq~----~~gWf~rC~Kinht-~g~~ 235 (1432)
.+.. +...+-.-+-.| +..++.......-+.+ +.+.++.+..||-|.-|.-.. ...|. ..-.. .++.
T Consensus 122 ~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~----~~~~~~~~~~ 196 (547)
T PF11715_consen 122 FSDLSEDNFEDWCRSYVP-YSFSFRSPHRLAAVTHDSEANLVVSLQDGGLLRLKRSSGDSDGSVWS----EELFNDSSWL 196 (547)
T ss_dssp ---S---S--S-EE-B-S-S-TTTS-EEEEEEE---SSSBEEEEESSS-EEEEEES----SSS-EE--------STHHHH
T ss_pred ccccccccccCccEeeeC-CCCCccCCCeEEEEEecCCCEEEEEECCCCeEEEECCcccCCCCeeE----EEEeCCCchh
Confidence 1110 000121111122 2333332221111111 567777888899888888664 33462 11111 1222
Q ss_pred ccccccccCccc--ccCCCCceEEEEEeC----CCceEEEEcCCCeEEEEEeCC
Q 000546 236 NVISRWIVPNVF--RFGAVDPIVELVFDN----ERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 236 S~~~~~llPs~~--~~~~~d~Ivqi~vD~----sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
..+.. ++|... ..........+.++. .+++|+||+.++++|+|++..
T Consensus 197 ~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t 249 (547)
T PF11715_consen 197 RSLSG-LFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLET 249 (547)
T ss_dssp HCCTT-TS-TT---SSSS---EEEEEE-----ETTTEEEEEETTSEEEEEETTT
T ss_pred hhhhC-cCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCCCeEEEEECCC
Confidence 22111 144321 112345566677777 889999999999999999964
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.31 E-value=0.89 Score=57.66 Aligned_cols=141 Identities=22% Similarity=0.338 Sum_probs=98.0
Q ss_pred EeCeEEEEecCCCCCCC---ccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeE
Q 000546 98 VDNSLFLWRFDKWDGQC---PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~~~~---~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~ 174 (1432)
=||+..||+|+++.... +-+.|..++|.+|++.+=++-.| +-+++.-.|.+-++--++... ..-
T Consensus 385 KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asff-------vsvS~D~tlK~W~l~~s~~~~------~~~ 451 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFF-------VSVSQDCTLKLWDLPKSKETA------FPI 451 (775)
T ss_pred CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEE-------EEecCCceEEEecCCCccccc------ccc
Confidence 48999999996544322 44578899999999977776666 567777777777664432111 111
Q ss_pred EeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CC--CEEEEEEecCCccccccce----eeeccCccccccccccCccc
Q 000546 175 LQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRK----VCHTAGVGNVISRWIVPNVF 247 (1432)
Q Consensus 175 L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq~~~gWf~rC~K----inht~g~~S~~~~~llPs~~ 247 (1432)
++... ++.-.++-.|+++.-.++.-+|..|. |- -||.+. | |+. -+|+.|+.++
T Consensus 452 ~~~~~-~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~--------~~l~~vLsGH~RGvw~V---------- 511 (775)
T KOG0319|consen 452 VLTCR-YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-Q--------LRLLGVLSGHTRGVWCV---------- 511 (775)
T ss_pred eehhh-HHHHhhcccccceEecCCCceEEecccccceeeeccc-C--------ceEEEEeeCCccceEEE----------
Confidence 22222 45556678899999999999999887 65 666666 2 443 3688887776
Q ss_pred ccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 248 RFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 248 ~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
+|++.| ++|-|=|.+.||++|.|.
T Consensus 512 ~Fs~~d-----------q~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 512 SFSKND-----------QLLATCSGDKTVKIWSIS 535 (775)
T ss_pred Eecccc-----------ceeEeccCCceEEEEEec
Confidence 344333 478899999999999995
No 12
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.15 E-value=7.4 Score=47.53 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=64.9
Q ss_pred eEeecCCeeEEEEEecCCCc-EEEeecCCCEEEEEEecCCccc-cccceeeeccCccccccccccCcccccCCCCceEEE
Q 000546 181 YTVPSDGVTMTCITCTDKGR-ILLAGRDGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVEL 258 (1432)
Q Consensus 181 ~sv~tdg~~v~~I~gT~~GR-IF~gG~DG~lYEl~Yq~~~gWf-~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi 258 (1432)
.++.+| ..+++++-.+-+| +|.|+++|+||-..|.+-.|-. +=-.|.-|-.+.. ++.+..-....+|.-+
T Consensus 212 lti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~-------~~~~~Gh~~~~~ITcL 283 (476)
T KOG0646|consen 212 LTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ-------INVLVGHENESAITCL 283 (476)
T ss_pred EEEecC-CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccce-------eeeeccccCCcceeEE
Confidence 566666 5677777777555 4555569999999998877753 1112333332211 2222222334599999
Q ss_pred EEeCCCceEEEEcCCCeEEEEEeCCC
Q 000546 259 VFDNERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 259 ~vD~sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
+|--.-.+|-+=+++|++.|||+.+.
T Consensus 284 ais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 284 AISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred EEecCccEEEeeCCCCCEEEEecchH
Confidence 99999999999999999999999753
No 13
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=90.11 E-value=2.9 Score=50.80 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=52.8
Q ss_pred eeEEEEEecCCCcEEEeec-CCC--EEEEEEecCCccccccceeeeccCccccccccccCc-ccccCCCCceEEEEEeCC
Q 000546 188 VTMTCITCTDKGRILLAGR-DGN--IYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPN-VFRFGAVDPIVELVFDNE 263 (1432)
Q Consensus 188 ~~v~~I~gT~~GRIF~gG~-DG~--lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs-~~~~~~~d~Ivqi~vD~s 263 (1432)
-.||||+-|+||-.|+.|. ||. +|-+.- .+.-.... +. .|- .|. ...=+|.+|.|+..
T Consensus 124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----------lv~a~~~~-~~-----~p~~~f~-~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTD-----------LVSADNDH-SV-----KPLHIFS-DHTLSITDLQIGSG 185 (476)
T ss_pred cceeEEEEeCCCcEEEecCCCccEEEEEEEe-----------ecccccCC-Cc-----cceeeec-cCcceeEEEEecCC
Confidence 3689999999998887775 995 444442 11111100 22 331 121 34567899999875
Q ss_pred --CceEEEEcCCCeEEEEEeCC
Q 000546 264 --RQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 264 --R~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+..|||-|++.+|++|||..
T Consensus 186 g~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 186 GTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred CccceEEEecCCceEEEEEecc
Confidence 89999999999999999963
No 14
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.80 E-value=7.7 Score=52.02 Aligned_cols=156 Identities=11% Similarity=0.086 Sum_probs=86.8
Q ss_pred EEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeE
Q 000546 95 WASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 95 W~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~ 174 (1432)
-.+-|+.+++||..++......+.+-...|.+|.... -++++..++.-.|.|.-+........ ...+.
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~---------~~~lvs~s~D~~ikiWd~~~~~~~~~---~~~l~ 702 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD---------SSTLVSSSTDNTLKLWDLSMSISGIN---ETPLH 702 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC---------CCEEEEEECCCEEEEEeCCCCccccC---CcceE
Confidence 3456899999999865422234556667888887742 13445555556677776532111000 01111
Q ss_pred EeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCC-ccccccceeeeccCccccccccccCcccccCCC
Q 000546 175 LQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGS-GWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAV 252 (1432)
Q Consensus 175 L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~-gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~ 252 (1432)
++.-....++++.-+.+|+.+.+|. ||.|+-....... -| ..+..+.. . ++..-.....
T Consensus 703 -------~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~---s~~~~~~~----~-----~~~~~~~~~~ 763 (793)
T PLN00181 703 -------SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL---SYKFKTID----P-----VSGLEVDDAS 763 (793)
T ss_pred -------EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE---EEecccCC----c-----ccccccCCCC
Confidence 2221223455666677787777765 8865543322110 01 00000100 0 1111111345
Q ss_pred CceEEEEEeCCCceEEEEcCCCeEEEEEe
Q 000546 253 DPIVELVFDNERQLLYARTEEMKLQVFVL 281 (1432)
Q Consensus 253 d~Ivqi~vD~sR~iLYtLs~~s~I~vy~L 281 (1432)
+.|..++.++.-+.|.+-+.+|+|.||+|
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 67999999999999999999999999997
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.21 E-value=7.4 Score=44.28 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=103.2
Q ss_pred eEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCcee
Q 000546 94 AWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEI 173 (1432)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el 173 (1432)
|=..-|.+|-+|--..|.-- -++.-.+.-+-+.-| .| =++.|+.|--.-|-|+-|.-++
T Consensus 14 vsA~YDhTIRfWqa~tG~C~-rTiqh~dsqVNrLei-Tp--------dk~~LAaa~~qhvRlyD~~S~n----------- 72 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICS-RTIQHPDSQVNRLEI-TP--------DKKDLAAAGNQHVRLYDLNSNN----------- 72 (311)
T ss_pred EeccCcceeeeeehhcCeEE-EEEecCccceeeEEE-cC--------CcchhhhccCCeeEEEEccCCC-----------
Confidence 44557889999987655421 112111222222222 12 1445777777778888875432
Q ss_pred EEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CC--CEEEEEEecCCccccccceeeeccCccccccccccCcccccC
Q 000546 174 SLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFG 250 (1432)
Q Consensus 174 ~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~ 250 (1432)
|.|.++.....-.|+.|--..+||=-..|. || .||++--- - .+..| .
T Consensus 73 ---p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~-------~------------------~qR~~--~ 122 (311)
T KOG0315|consen 73 ---PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-------S------------------CQRNY--Q 122 (311)
T ss_pred ---CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc-------c------------------cchhc--c
Confidence 123344443334566665556999877765 88 67777610 0 22222 2
Q ss_pred CCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcEEEEEe
Q 000546 251 AVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISP 330 (1432)
Q Consensus 251 ~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvsI~p 330 (1432)
...+|-.+++-+...=|.+=..+|.|+||||+.+- +.+ + +.+....+|-|+++
T Consensus 123 ~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~---c~~--~----------------------liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 123 HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS---CTH--E----------------------LIPEDDTSIQSLTV 175 (311)
T ss_pred CCCCcceEEecCCcceEEeecCCCcEEEEEccCCc---ccc--c----------------------cCCCCCcceeeEEE
Confidence 34667777777777788888888999999998652 111 1 11123456666665
Q ss_pred cCccCccceEEEEEecCceEEEEe
Q 000546 331 LSTLESKWLHLVAVLSDGRRMYLS 354 (1432)
Q Consensus 331 Is~~ES~~l~LVAVT~~G~RLYfs 354 (1432)
-+ + .--|+|++.+|.=+-..
T Consensus 176 ~~--d--gsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 176 MP--D--GSMLAAANNKGNCYVWR 195 (311)
T ss_pred cC--C--CcEEEEecCCccEEEEE
Confidence 32 2 23789999999655444
No 16
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=86.29 E-value=12 Score=45.39 Aligned_cols=177 Identities=19% Similarity=0.267 Sum_probs=104.7
Q ss_pred cccccccccc-cceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCccccc-ceEEEEEee---------
Q 000546 81 GNALCGIFPE-IRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEA-IQYLLILAT--------- 149 (1432)
Q Consensus 81 ~~~~mGlFpE-I~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~-I~~lLvvaT--------- 149 (1432)
..|.|-+.|+ =.-.---+|....+.|+..+. ....|.|-.-.|++|...+----|+... ..++=|-..
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhh-hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3455556665 112233467789999997543 3478999889999998877665555543 222211111
Q ss_pred -cceEEEEEeeecCCCC-----CCCCCceeEEeeCC-CeEee---cCCeeEEEEEecCCCcEEEeec-CC--CEEEEEEe
Q 000546 150 -PVELILVGVCCSGAGD-----GTDPYAEISLQPLP-EYTVP---SDGVTMTCITCTDKGRILLAGR-DG--NIYELLYT 216 (1432)
Q Consensus 150 -~~eI~Llgvs~~~~~~-----~~~~~~el~L~~~~-~~sv~---tdg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq 216 (1432)
+.|--+-+++...+++ .++.+=-.+.+.+. .+++- +.++.+++.+-++||=||-.|. || .||++.=+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 1111123333322211 11111111111111 12222 3357899999999999999997 98 67777633
Q ss_pred cCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000546 217 TGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 217 ~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
. ....| | +...+|..|.+-+..-.|-|=++++.|..|||-+.
T Consensus 380 ~---------------~~a~F------p-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 380 T---------------NVAKF------P-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred c---------------ccccC------C-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 1 11111 2 46788999999888899999999999999999543
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.10 E-value=11 Score=48.58 Aligned_cols=140 Identities=16% Similarity=0.288 Sum_probs=89.6
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEe
Q 000546 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1432)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~ 176 (1432)
.=|+|+-+||-..+=. +++|++-...+++|..-+-.. +||..|.+++--.-|- +.-.=|
T Consensus 369 ~eDgKVKvWn~~SgfC-~vTFteHts~Vt~v~f~~~g~-------------------~llssSLDGtVRAwDl-kRYrNf 427 (893)
T KOG0291|consen 369 AEDGKVKVWNTQSGFC-FVTFTEHTSGVTAVQFTARGN-------------------VLLSSSLDGTVRAWDL-KRYRNF 427 (893)
T ss_pred cCCCcEEEEeccCceE-EEEeccCCCceEEEEEEecCC-------------------EEEEeecCCeEEeeee-ccccee
Confidence 3469999999854322 378998888888887754432 1223333321000000 011113
Q ss_pred eCCCeEeecCCeeEEEEEecCCCcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceE
Q 000546 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIV 256 (1432)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Iv 256 (1432)
. .|+.|.+ +.++|++.-+.|.|-++|. -+.|||.--+- + |.-+.-. ++ +.+.||.
T Consensus 428 R--Tft~P~p-~QfscvavD~sGelV~AG~-~d~F~IfvWS~----q-------TGqllDi---------Ls-GHEgPVs 482 (893)
T KOG0291|consen 428 R--TFTSPEP-IQFSCVAVDPSGELVCAGA-QDSFEIFVWSV----Q-------TGQLLDI---------LS-GHEGPVS 482 (893)
T ss_pred e--eecCCCc-eeeeEEEEcCCCCEEEeec-cceEEEEEEEe----e-------cCeeeeh---------hc-CCCCcce
Confidence 2 2888887 8999999888999998886 23566652110 0 1111111 12 5788999
Q ss_pred EEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 257 ELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 257 qi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
.+++++.-+.||+.|=+.||+.|++=
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEee
Confidence 99999999999999999999999983
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=83.64 E-value=58 Score=37.98 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=87.9
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccc----cce-----EEEEEeecceE----EEEEeeecCC
Q 000546 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVE----AIQ-----YLLILATPVEL----ILVGVCCSGA 163 (1432)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~----~I~-----~lLvvaT~~eI----~Llgvs~~~~ 163 (1432)
+-|..|.|||...+..- ..|.|-...+++|++-.--.-+--. .|+ -.. ..|-.+. .+-.|+|.++
T Consensus 82 swD~~lrlWDl~~g~~t-~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGEST-RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred cccceEEEEEecCCcEE-EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCC
Confidence 45899999999876432 4677777777877763311111110 111 000 1111111 2444555543
Q ss_pred CC-------CCCCCceeEEeeCCCeEeec----CCeeEEEEEecCCCcEEEee-cCCCEEEEEEecCCccccccceeeec
Q 000546 164 GD-------GTDPYAEISLQPLPEYTVPS----DGVTMTCITCTDKGRILLAG-RDGNIYELLYTTGSGWYKRCRKVCHT 231 (1432)
Q Consensus 164 ~~-------~~~~~~el~L~~~~~~sv~t----dg~~v~~I~gT~~GRIF~gG-~DG~lYEl~Yq~~~gWf~rC~Kinht 231 (1432)
++ +.| +.+.+-+...+.+-+ ..-+++.++.++||-+-..| +||-++--.-.+ +||
T Consensus 160 ~~~p~Ivs~s~D--ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~-----~k~------ 226 (315)
T KOG0279|consen 160 ESNPIIVSASWD--KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE-----GKN------ 226 (315)
T ss_pred CCCcEEEEccCC--ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC-----Cce------
Confidence 21 111 344444444333322 23468888889999988655 588444333111 111
Q ss_pred cCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 232 AGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 232 ~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+-+ +...+.|-.+++-+.|--|-..+..| |.+|++..
T Consensus 227 --lys------------l~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~ 263 (315)
T KOG0279|consen 227 --LYS------------LEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLES 263 (315)
T ss_pred --eEe------------ccCCCeEeeEEecCCceeEeeccCCc-eEEEeccc
Confidence 212 35677888888888998888888876 99999964
No 19
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.38 E-value=9 Score=49.04 Aligned_cols=139 Identities=16% Similarity=0.278 Sum_probs=84.3
Q ss_pred ccccceeEE--EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCC--CcccccceEEEEEeecceEEEEEeeecCC
Q 000546 88 FPEIRRAWA--SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKP--GIFVEAIQYLLILATPVELILVGVCCSGA 163 (1432)
Q Consensus 88 FpEI~rAW~--tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKp--GVF~~~I~~lLvvaT~~eI~Llgvs~~~~ 163 (1432)
||+.+.--+ +.|-++.+||+..+.-. ..|-|...+|..+.+.+.+- |.|- ..|.+--|.
T Consensus 257 ~~~~~~~lvsgS~D~t~rvWd~~sg~C~-~~l~gh~stv~~~~~~~~~~~sgs~D------------~tVkVW~v~---- 319 (537)
T KOG0274|consen 257 FPSGGDKLVSGSTDKTERVWDCSTGECT-HSLQGHTSSVRCLTIDPFLLVSGSRD------------NTVKVWDVT---- 319 (537)
T ss_pred EecCCCEEEEEecCCcEEeEecCCCcEE-EEecCCCceEEEEEccCceEeeccCC------------ceEEEEecc----
Confidence 444444333 46899999998766544 45678889999988865431 1122 222222221
Q ss_pred CCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecCC--CEEEEEEecCCccccccceeeeccCcccccccc
Q 000546 164 GDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRW 241 (1432)
Q Consensus 164 ~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG--~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~ 241 (1432)
++ .-+++.. . .+-.|.+|..+ .+++|.|+.|| -||-+.+- +|
T Consensus 320 -n~----~~l~l~~-----~--h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~-------~c---------------- 363 (537)
T KOG0274|consen 320 -NG----ACLNLLR-----G--HTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG-------KC---------------- 363 (537)
T ss_pred -Cc----ceEEEec-----c--ccccEEEEEec-CCEEEEEecCceEEEEEhhhc-------ee----------------
Confidence 11 2233321 1 23467788776 67777777799 33333311 11
Q ss_pred ccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 242 IVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 242 llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
|-+ ++ +....|..+.+|.. +.+|+-+-+++|++||+..
T Consensus 364 -l~s-l~-gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 364 -LKS-LS-GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred -eee-ec-CCcceEEEEEecCc-ceEEeeeeccceEeecCCc
Confidence 111 11 35778888999998 9999999999999999963
No 20
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=79.49 E-value=19 Score=45.89 Aligned_cols=151 Identities=17% Similarity=0.396 Sum_probs=91.3
Q ss_pred eEEEEeCeEEEEecCCCCCCC-ccccCCCcceEEEEeeccCCCcccccceEEEEEeec--ceEEEEEeeecCCCCCCCCC
Q 000546 94 AWASVDNSLFLWRFDKWDGQC-PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATP--VELILVGVCCSGAGDGTDPY 170 (1432)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~-~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~--~eI~Llgvs~~~~~~~~~~~ 170 (1432)
.=++-|-.+.+||-..++..+ ...-.-++.|.+++...++-. ||++-- ..|+|.-+.-..+. -..+.
T Consensus 89 IS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~---------lvaSgGLD~~IflWDin~~~~~-l~~s~ 158 (735)
T KOG0308|consen 89 ISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNE---------LVASGGLDRKIFLWDINTGTAT-LVASF 158 (735)
T ss_pred EEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCce---------eEEecCCCccEEEEEccCcchh-hhhhc
Confidence 346679999999998654222 334455678888877533322 344433 34666555422110 00011
Q ss_pred ceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccc-cccceeeeccCccccccccccCcccc
Q 000546 171 AEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVFR 248 (1432)
Q Consensus 171 ~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf-~rC~Kinht~g~~S~~~~~llPs~~~ 248 (1432)
+.++...++ +=|-+ .+-+..-+++|-||.+|. .++|- | |- +-|.|+.- ++
T Consensus 159 n~~t~~sl~--sG~k~--siYSLA~N~t~t~ivsGgtek~lr-~-------wDprt~~kimk----------------Lr 210 (735)
T KOG0308|consen 159 NNVTVNSLG--SGPKD--SIYSLAMNQTGTIIVSGGTEKDLR-L-------WDPRTCKKIMK----------------LR 210 (735)
T ss_pred cccccccCC--CCCcc--ceeeeecCCcceEEEecCcccceE-E-------eccccccceee----------------ee
Confidence 233333222 22233 455777788999999987 55432 1 33 44555532 12
Q ss_pred cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 249 FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 249 ~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+..|.|.-+.+++.-.-+-+=|++|+|++|+||.
T Consensus 211 -GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 211 -GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred -ccccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 4678899999988888888999999999999985
No 21
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=79.33 E-value=68 Score=38.02 Aligned_cols=83 Identities=14% Similarity=0.269 Sum_probs=59.4
Q ss_pred eEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEE
Q 000546 181 YTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELV 259 (1432)
Q Consensus 181 ~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~ 259 (1432)
..|+.+...|.|+.=+.+|-.-..++ .|-|..|-=. ++| .... -+=+......|-+|+
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt-~~g------------~~l~--------E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT-EDG------------TLLQ--------ELRRGVDRADIYCIA 233 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc-CCC------------cEee--------eeecCCchheEEEEE
Confidence 56777777888888888888887776 8888877632 111 1111 111223456699999
Q ss_pred EeCCCceEEEEcCCCeEEEEEeCCC
Q 000546 260 FDNERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 260 vD~sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
+-+.-..|-..|+|||+.+|.|..+
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999643
No 22
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=74.37 E-value=15 Score=42.99 Aligned_cols=137 Identities=15% Similarity=0.239 Sum_probs=91.2
Q ss_pred EEeCeEEEEecCCCCCCCccccCC--CcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeE
Q 000546 97 SVDNSLFLWRFDKWDGQCPEYTGE--EQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~--~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~ 174 (1432)
+-|..+-+|+-..++.. .+|-.+ +-.|.+|-+. || +-.|.+|---...|+|+-+.- +
T Consensus 367 SsDgtvkvW~~KtteC~-~Tfk~~~~d~~vnsv~~~-PK------npeh~iVCNrsntv~imn~qG-------------Q 425 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECL-STFKPLGTDYPVNSVILL-PK------NPEHFIVCNRSNTVYIMNMQG-------------Q 425 (508)
T ss_pred cCCccEEEecCcchhhh-hhccCCCCcccceeEEEc-CC------CCceEEEEcCCCeEEEEeccc-------------e
Confidence 45789999998876654 667644 3456666554 32 345666666666777766521 1
Q ss_pred EeeCCCeEee--cCCeeEEEEEecCCCcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCC
Q 000546 175 LQPLPEYTVP--SDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAV 252 (1432)
Q Consensus 175 L~~~~~~sv~--tdg~~v~~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~ 252 (1432)
+.. .|+-. -.|-.|+++.++..--||..|+||-+|=+.|++ .|.-|| +| . .+
T Consensus 426 vVr--sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s--------G~LE~t-----------l~----V-hE 479 (508)
T KOG0275|consen 426 VVR--SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS--------GKLERT-----------LP----V-HE 479 (508)
T ss_pred EEe--eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec--------Cceeee-----------ee----c-cc
Confidence 221 13222 135678888888888899999999999999873 222222 33 1 23
Q ss_pred CceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000546 253 DPIVELVFDNERQLLYARTEEMKLQVFV 280 (1432)
Q Consensus 253 d~Ivqi~vD~sR~iLYtLs~~s~I~vy~ 280 (1432)
.-++.|+--+.+|+|.+-+++|.+..|.
T Consensus 480 kdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 480 KDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccccccccCcccchhhhhcccchhhhcC
Confidence 3456788888999999999999988884
No 23
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=74.08 E-value=61 Score=38.34 Aligned_cols=142 Identities=15% Similarity=0.278 Sum_probs=77.5
Q ss_pred eEEEEeCeEEEEecCCCCCCC----------ccccCCC-cceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecC
Q 000546 94 AWASVDNSLFLWRFDKWDGQC----------PEYTGEE-QVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSG 162 (1432)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~----------~~fd~~~-~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~ 162 (1432)
.|+.-.|+|+++...+..|.- .+|...- -.|+.+|++ +.=+|++--+-..+|.|.-+.-
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--------~~~k~imsas~dt~i~lw~lkG-- 218 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--------GNAKYIMSASLDTKICLWDLKG-- 218 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec--------CCceEEEEecCCCcEEEEecCC--
Confidence 477778999999876532211 1222111 123444442 2335555555666666665531
Q ss_pred CCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec---CCCEEEEEEecCCcccccccee----eeccCcc
Q 000546 163 AGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR---DGNIYELLYTTGSGWYKRCRKV----CHTAGVG 235 (1432)
Q Consensus 163 ~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~---DG~lYEl~Yq~~~gWf~rC~Ki----nht~g~~ 235 (1432)
..++ +|.|+-..-..-.-+++||.-..+. |=-|||+.|+. +|=|+-..++ -|+++.
T Consensus 219 --------q~L~-------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV- 281 (420)
T KOG2096|consen 219 --------QLLQ-------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAV- 281 (420)
T ss_pred --------ceee-------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc-Ccchhhhhhhheeccchhhe-
Confidence 1122 4444322222333478999776553 77999999995 4544222222 233332
Q ss_pred ccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 236 NVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 236 S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
.-.++-++-.-.-|.|.+|++++||..
T Consensus 282 --------------------~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 282 --------------------LAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred --------------------eeeeeCCCcceeEEEecCCcEEEeecc
Confidence 223333333445788999999999985
No 24
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=71.90 E-value=1.1e+02 Score=36.52 Aligned_cols=145 Identities=10% Similarity=0.161 Sum_probs=78.4
Q ss_pred CeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeCC
Q 000546 100 NSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLP 179 (1432)
Q Consensus 100 n~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~ 179 (1432)
|++.+|| |-..-.|.....-.|..+|+....+ +||.++..|+++- |..++.. -..+.-.+.|
T Consensus 75 NkviIWD-----------D~k~~~i~el~f~~~I~~V~l~r~r--iVvvl~~~I~Vyt--F~~n~k~---l~~~et~~NP 136 (346)
T KOG2111|consen 75 NKVIIWD-----------DLKERCIIELSFNSEIKAVKLRRDR--IVVVLENKIYVYT--FPDNPKL---LHVIETRSNP 136 (346)
T ss_pred ceEEEEe-----------cccCcEEEEEEeccceeeEEEcCCe--EEEEecCeEEEEE--cCCChhh---eeeeecccCC
Confidence 7899999 2223455556666666666665554 8888999998876 4321110 0112222212
Q ss_pred -CeEeecCCeeEEEEEecCCCcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEE
Q 000546 180 -EYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVEL 258 (1432)
Q Consensus 180 -~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi 258 (1432)
+++.-.+...-+-++ |=|=+-|.|-=+++.+ .+. +..+. +| ..+..|..|
T Consensus 137 kGlC~~~~~~~k~~La-------fPg~k~GqvQi~dL~~--------~~~----~~p~~-----I~-----AH~s~Iacv 187 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLA-------FPGFKTGQVQIVDLAS--------TKP----NAPSI-----IN-----AHDSDIACV 187 (346)
T ss_pred CceEeecCCCCceEEE-------cCCCccceEEEEEhhh--------cCc----CCceE-----EE-----cccCceeEE
Confidence 122111111111111 1111245444444331 111 11111 32 457789999
Q ss_pred EEeCCCceEEEEcCCCe-EEEEEeCCCCCCCcceeeeec
Q 000546 259 VFDNERQLLYARTEEMK-LQVFVLGPNGDGPLKKVAEER 296 (1432)
Q Consensus 259 ~vD~sR~iLYtLs~~s~-I~vy~Lg~~g~~~~~~v~~~~ 296 (1432)
...-.-.+|.|=|+||| ||+|+-. +| .++.+++
T Consensus 188 ~Ln~~Gt~vATaStkGTLIRIFdt~-~g----~~l~E~R 221 (346)
T KOG2111|consen 188 ALNLQGTLVATASTKGTLIRIFDTE-DG----TLLQELR 221 (346)
T ss_pred EEcCCccEEEEeccCcEEEEEEEcC-CC----cEeeeee
Confidence 99999999999999995 8999974 44 4555553
No 25
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=71.83 E-value=44 Score=43.29 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=81.1
Q ss_pred eeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecc-eEEEEEeeecCCCCCCCCCc
Q 000546 93 RAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPV-ELILVGVCCSGAGDGTDPYA 171 (1432)
Q Consensus 93 rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~-eI~Llgvs~~~~~~~~~~~~ 171 (1432)
-.-+|-|..|||.|.+...-. ..+-|-.+.|..+.++-|.- + .|+|||.. ++.++- .. + .
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~-k~ivG~ndEI~Dm~~lG~e~-------~-~laVATNs~~lr~y~--~~---~-----~ 356 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIV-KQIVGYNDEILDMKFLGPEE-------S-HLAVATNSPELRLYT--LP---T-----S 356 (775)
T ss_pred eEEEEccceEEEEEccccEEe-hhhcCCchhheeeeecCCcc-------c-eEEEEeCCCceEEEe--cC---C-----C
Confidence 356889999999998764432 33455578899999877652 2 36677654 354551 11 0 1
Q ss_pred eeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CC--CEEEEEEecCCccccccce-------eeeccCcccccccc
Q 000546 172 EISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRK-------VCHTAGVGNVISRW 241 (1432)
Q Consensus 172 el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq~~~gWf~rC~K-------inht~g~~S~~~~~ 241 (1432)
+-+|++- .+ -.|.++..+++|-.++.|. |. -||.+. +.|.| .+|++.+.-+...-
T Consensus 357 ~c~ii~G-----H~--e~vlSL~~~~~g~llat~sKD~svilWr~~--------~~~~~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 357 YCQIIPG-----HT--EAVLSLDVWSSGDLLATGSKDKSVILWRLN--------NNCSKSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred ceEEEeC-----ch--hheeeeeecccCcEEEEecCCceEEEEEec--------CCcchhhhhhhhcccccccceeeecc
Confidence 2223321 12 2455565678897777775 87 667772 23433 25665444331111
Q ss_pred ccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 242 IVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 242 llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
.=|+ .|-+-|.+.+|++|+|+.
T Consensus 422 ~~as--------------------ffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 422 LGAS--------------------FFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred cCcc--------------------EEEEecCCceEEEecCCC
Confidence 1122 556788899999999986
No 26
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=71.39 E-value=1.1e+02 Score=37.05 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=99.1
Q ss_pred eEEEEe--CeEEEEecCCCCCCC-ccccCCCcceEEEEeeccC------CCcccccceEEEEEeecceE-----EEEEee
Q 000546 94 AWASVD--NSLFLWRFDKWDGQC-PEYTGEEQVICAVGLAKSK------PGIFVEAIQYLLILATPVEL-----ILVGVC 159 (1432)
Q Consensus 94 AW~tID--n~L~LW~Y~~~~~~~-~~fd~~~~~I~aV~LVkPK------pGVF~~~I~~lLvvaT~~eI-----~Llgvs 159 (1432)
|-+.++ .+|-+.++......| ..| +..|++|.+-|-| --+|+=+|+...++=|--++ -+.+++
T Consensus 60 aiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 60 AIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 334444 569999998766544 334 8999999986644 33555556666665554443 244444
Q ss_pred ecCCCC-----CCCCCceeEEeeCC----CeEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceee
Q 000546 160 CSGAGD-----GTDPYAEISLQPLP----EYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVC 229 (1432)
Q Consensus 160 ~~~~~~-----~~~~~~el~L~~~~----~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kin 229 (1432)
.+.+.. +.....++.||.+- .+.|..+.-.+.++.-+.+|-.-..++ .|-|..+.
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf--------------- 201 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVF--------------- 201 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEE---------------
Confidence 443210 11122456665432 245555555677777777777776665 56666654
Q ss_pred eccCccccccccccCc---c--cc-cCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 230 HTAGVGNVISRWIVPN---V--FR-FGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 230 ht~g~~S~~~~~llPs---~--~~-~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+ +|+ + |+ ....-.|.+|+++.+-.+|-.-|++.+|.||+|+.
T Consensus 202 ~------------v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 202 S------------VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred E------------cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 1 222 1 11 12355699999999999999999999999999964
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=70.51 E-value=64 Score=38.79 Aligned_cols=51 Identities=16% Similarity=0.338 Sum_probs=36.6
Q ss_pred HHhcCCccccccccccccceeEEEE---eCeEEEEecCCCCCCCccccCCCcceEEEEe
Q 000546 74 YNAAGGEGNALCGIFPEIRRAWASV---DNSLFLWRFDKWDGQCPEYTGEEQVICAVGL 129 (1432)
Q Consensus 74 ~n~~~~q~~~~mGlFpEI~rAW~tI---Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~L 129 (1432)
..|+ +..--+++-| +.-|+.- |++=|||+..+++ +..+.-|-++.|+++..
T Consensus 61 ~~H~--~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 61 DKHT--DSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSF 114 (399)
T ss_pred hhcC--CceEEEEeCC--CCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEE
Confidence 3445 5555678888 7778764 8999999998876 43455566788887765
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=69.74 E-value=1e+02 Score=41.47 Aligned_cols=31 Identities=6% Similarity=-0.017 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 252 VDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 252 ~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
...+..+.++...++|.+-+.+++|.+|+..
T Consensus 708 ~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 708 TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 4556678888888999999999999999975
No 29
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=69.12 E-value=50 Score=39.61 Aligned_cols=73 Identities=18% Similarity=0.350 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCCCccCCccccccchhh-hhhHh
Q 000546 1112 FDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLL-DLLEG 1190 (1432)
Q Consensus 1112 ~DLLWryy~k~~~~~~AA~VL~~LA~~~s~~s~~~isL~~RIeYLsrAv~~aks~~~~~~~~g~~~~~~~~~~l-~~Le~ 1190 (1432)
.++|-.||....+|.++|....+-|-+. -..++|+++|..|....+.... ..|. .-+|+
T Consensus 97 ~~~L~~~y~q~d~~~~~a~~~l~~~~~~-------~~~~~~~~~L~~a~~~y~~~k~-------------~~f~~~~~e~ 156 (319)
T PF04840_consen 97 RELLKDFYYQEDRFQELANLHLQEALSQ-------KDVEEKISFLKQAQKLYSKSKN-------------DAFEAKLIEE 156 (319)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHHHhcch-------------hHHHHHHHHH
Confidence 5789999999999999999998877532 3679999999999865543321 1222 34677
Q ss_pred HHHHHHHHHHHHHH
Q 000546 1191 KLAVLRFQTKIKDE 1204 (1432)
Q Consensus 1191 kleVaqiQ~~I~~~ 1204 (1432)
.++..++|.++-+.
T Consensus 157 q~~Ll~~Q~~Le~~ 170 (319)
T PF04840_consen 157 QIKLLEYQKELEEK 170 (319)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888886554
No 30
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=68.13 E-value=16 Score=43.24 Aligned_cols=164 Identities=20% Similarity=0.302 Sum_probs=100.6
Q ss_pred EeCeEEEEecCCCCC-CCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEe
Q 000546 98 VDNSLFLWRFDKWDG-QCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~~-~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~ 176 (1432)
.|-.++|||...... .-.++|--.+-|+.|....-+|++... =++.--|.|+-+.-++..+. |.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlS-------GSvDGLvnlfD~~~d~EeDa--------L~ 205 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLS-------GSVDGLVNLFDTKKDNEEDA--------LL 205 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEe-------ecccceEEeeecCCCcchhh--------HH
Confidence 466799999987654 235777778899999977666664322 11222255665544422221 22
Q ss_pred eCCCeEeecCCeeEEEEEecCCC--cEEEeecCC--CEEEEEEecCCccc-cc------------cc-ee-eeccCcccc
Q 000546 177 PLPEYTVPSDGVTMTCITCTDKG--RILLAGRDG--NIYELLYTTGSGWY-KR------------CR-KV-CHTAGVGNV 237 (1432)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gT~~G--RIF~gG~DG--~lYEl~Yq~~~gWf-~r------------C~-Ki-nht~g~~S~ 237 (1432)
. ++.+ |..|.+|.=..+| |||.-..++ .+||+.=-.++-|+ +- |. .| +|..|-.-+
T Consensus 206 ~----viN~-~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 206 H----VINH-GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred H----hhcc-cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 1 1222 4567888777889 999888855 89999988888888 31 21 11 222110000
Q ss_pred ---ccc-----cccCcc-------------cccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEe
Q 000546 238 ---ISR-----WIVPNV-------------FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVL 281 (1432)
Q Consensus 238 ---~~~-----~llPs~-------------~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~L 281 (1432)
+-. -++|.. +..+..+-+..+.+|..+..|||=.|+|.+.+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 000 012221 22234556778999999999999999999999996
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=67.90 E-value=46 Score=43.26 Aligned_cols=152 Identities=18% Similarity=0.272 Sum_probs=86.1
Q ss_pred ccccccccccc--cceeEEEEeC------------eEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEE
Q 000546 80 EGNALCGIFPE--IRRAWASVDN------------SLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLL 145 (1432)
Q Consensus 80 q~~~~mGlFpE--I~rAW~tIDn------------~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lL 145 (1432)
+....+|+... -|+.|+++|. .+.+||...++-+-.-++ -+-| .-+=
T Consensus 9 e~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~-----------~~~k--------~evt 69 (888)
T KOG0306|consen 9 EPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLIL-----------LKKK--------AEVT 69 (888)
T ss_pred cccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhh-----------hccc--------ceEE
Confidence 33345666666 6777887773 688899987632211111 0111 1122
Q ss_pred EEeecceEEEEEeeecCCCCCCCCCceeEEeeCC----CeEeecCCeeEEEEEecCCCcEEEee-cCCCEEEEEEecCCc
Q 000546 146 ILATPVELILVGVCCSGAGDGTDPYAEISLQPLP----EYTVPSDGVTMTCITCTDKGRILLAG-RDGNIYELLYTTGSG 220 (1432)
Q Consensus 146 vvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~----~~sv~tdg~~v~~I~gT~~GRIF~gG-~DG~lYEl~Yq~~~g 220 (1432)
+++-.-++.+|+|.|.+ | -++++..- .+..+-+...|+++.-...|--|..| .||+|.=-+--.|.|
T Consensus 70 ~l~~~~d~l~lAVGYaD---G-----sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G 141 (888)
T KOG0306|consen 70 CLRSSDDILLLAVGYAD---G-----SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG 141 (888)
T ss_pred EeeccCCcceEEEEecC---c-----eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee
Confidence 34455667788999964 2 34554321 12222244667878777665555555 599654333335555
Q ss_pred cccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 221 WYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 221 Wf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
-| +.- +.+|.|.|+-+=+.-++|-+-+.++.|++|||.
T Consensus 142 l~---rL~---------------------GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~ 179 (888)
T KOG0306|consen 142 LF---RLR---------------------GHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE 179 (888)
T ss_pred eE---Eee---------------------cchHHHhHHhccCCCeEEEEeccCceEEEEecc
Confidence 53 111 235555555554466788888888889999985
No 32
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=66.90 E-value=51 Score=37.30 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=60.7
Q ss_pred EEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeCCCeEee---cCCeeEEEEEecCCCcEEEeecC---------CCE
Q 000546 143 YLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVP---SDGVTMTCITCTDKGRILLAGRD---------GNI 210 (1432)
Q Consensus 143 ~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~---tdg~~v~~I~gT~~GRIF~gG~D---------G~l 210 (1432)
..|+||....+.++ ... + .+++.+ +..+ ......++++..++|+||++... |.|
T Consensus 52 g~l~v~~~~~~~~~--d~~---~-----g~~~~~----~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v 117 (246)
T PF08450_consen 52 GRLYVADSGGIAVV--DPD---T-----GKVTVL----ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV 117 (246)
T ss_dssp SEEEEEETTCEEEE--ETT---T-----TEEEEE----EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred CEEEEEEcCceEEE--ecC---C-----CcEEEE----eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence 55677777777666 221 1 244433 2222 24578999999999999999752 446
Q ss_pred EEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEE-EEcCCCeEEEEEeCCCC
Q 000546 211 YELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLY-ARTEEMKLQVFVLGPNG 285 (1432)
Q Consensus 211 YEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLY-tLs~~s~I~vy~Lg~~g 285 (1432)
|.+.=. +- +..+ .+ + + -.| --|++++..+.|| +-+.++.|..|++..++
T Consensus 118 ~~~~~~---~~---~~~~-~~-~---~----~~p-----------NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 118 YRIDPD---GK---VTVV-AD-G---L----GFP-----------NGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp EEEETT---SE---EEEE-EE-E---E----SSE-----------EEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEECCC---Ce---EEEE-ec-C---c----ccc-----------cceEECCcchheeecccccceeEEEeccccc
Confidence 665511 11 1110 00 0 0 012 3577888888888 67889999999997665
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=66.01 E-value=49 Score=39.92 Aligned_cols=164 Identities=15% Similarity=0.223 Sum_probs=100.3
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEe
Q 000546 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1432)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~ 176 (1432)
+.|+.+-+||-. |... ..+.|-...|.+|+.+.+-+-- . ++|++..+-.|.--.++.+... +...
T Consensus 122 sYDg~~riWd~~-Gk~~-~~~~Ght~~ik~v~~v~~n~~~------~-~fvsas~Dqtl~Lw~~~~~~~~------~~~~ 186 (423)
T KOG0313|consen 122 SYDGTSRIWDLK-GKSI-KTIVGHTGPIKSVAWVIKNSSS------C-LFVSASMDQTLRLWKWNVGENK------VKAL 186 (423)
T ss_pred ecCCeeEEEecC-CceE-EEEecCCcceeeeEEEecCCcc------c-eEEEecCCceEEEEEecCchhh------hhHH
Confidence 579999999975 3333 4678889999999998775421 1 5555555544444444432210 0000
Q ss_pred eCCCeEeecCCeeEEEEEecCCCcEEEeec-CC--CEEEEEEecCC---ccccccceeeeccC-ccccccccccCccccc
Q 000546 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGS---GWYKRCRKVCHTAG-VGNVISRWIVPNVFRF 249 (1432)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq~~~---gWf~rC~Kinht~g-~~S~~~~~llPs~~~~ 249 (1432)
-...=+--.|-+|...++|--|..|. |. .||-..-..++ +--+|=+|.+.... ..-- .|-+.--
T Consensus 187 ----~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r-----~P~vtl~ 257 (423)
T KOG0313|consen 187 ----KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR-----TPLVTLE 257 (423)
T ss_pred ----hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc-----CceEEec
Confidence 01111223566777778999999998 87 56662221111 11133344443321 1222 4543334
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCC
Q 000546 250 GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPNG 285 (1432)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~g 285 (1432)
+..+++.+++.++ -..+|+-|-+-+|++|||...|
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeeccc
Confidence 6789999999999 7889999999999999997554
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=65.64 E-value=1.8e+02 Score=38.34 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=98.0
Q ss_pred EEEEeCeEEEEecCCCC-------------CCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeec
Q 000546 95 WASVDNSLFLWRFDKWD-------------GQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCS 161 (1432)
Q Consensus 95 W~tIDn~L~LW~Y~~~~-------------~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~ 161 (1432)
=++=|..|++|.|+... +..-.-++.++.+-.+.-.|-|.--|.++-..|.+.+-.....+|.|.|+
T Consensus 206 tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs 285 (893)
T KOG0291|consen 206 TVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS 285 (893)
T ss_pred EEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec
Confidence 34558999999998211 11011122334555666666666666666566788888888889999887
Q ss_pred CCCCCCCCCceeEEeeCCCe----EeecCCeeEEEEEecCCCc-EEEeec-CC--CEEEEEEecCCccc-cc----ccee
Q 000546 162 GAGDGTDPYAEISLQPLPEY----TVPSDGVTMTCITCTDKGR-ILLAGR-DG--NIYELLYTTGSGWY-KR----CRKV 228 (1432)
Q Consensus 162 ~~~~~~~~~~el~L~~~~~~----sv~tdg~~v~~I~gT~~GR-IF~gG~-DG--~lYEl~Yq~~~gWf-~r----C~Ki 228 (1432)
+ .+..||..|.| +++.-.-.|..+.-..+|. |=+||. -| -|||.+ + +.+. |. -+-.
T Consensus 286 s--------G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq--s-EsYVlKQQgH~~~i~ 354 (893)
T KOG0291|consen 286 S--------GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ--S-ESYVLKQQGHSDRIT 354 (893)
T ss_pred C--------CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee--c-cceeeecccccccee
Confidence 5 35556666643 2333323455555555555 334444 56 455543 2 2221 10 0111
Q ss_pred eeccCc-cccccc---------cc-cCcc--cccCC-CCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 229 CHTAGV-GNVISR---------WI-VPNV--FRFGA-VDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 229 nht~g~-~S~~~~---------~l-lPs~--~~~~~-~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
|...+. +++|.. |= ..+| ..|.+ ...+.-+.+-...+.|.+.|-+|++++|||..
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 111111 222221 10 1111 13443 34566666667889999999999999999963
No 35
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=64.99 E-value=20 Score=34.26 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhhCCCCCCccchhhhhHHHHHHHhhcC
Q 000546 851 RLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVT 908 (1432)
Q Consensus 851 ~l~~~Li~aLIn~~i~~~g~~svd~Is~~Lr~~Cpsf~s~dD~~~~KA~E~L~~Ak~~ 908 (1432)
-|...|..++.+.+-.... .+.|+|-+.|++.||....+..-++|.|.-.|.+++..
T Consensus 11 PL~EvlC~~I~dln~~~~~-at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li~erkI 67 (80)
T PF10264_consen 11 PLPEVLCWVISDLNAAGQP-ATQETLREHLRKHYPGIAIPSQEVLYNTLGTLIKERKI 67 (80)
T ss_pred eHHHHHHHHHHHHhccCCc-chHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHcCce
Confidence 3566677777777766555 79999999999999999999999999999999998764
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=63.98 E-value=1.8e+02 Score=35.14 Aligned_cols=194 Identities=13% Similarity=0.249 Sum_probs=118.6
Q ss_pred HHHHHHhcCCccccccccccccceeE-EEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCccccc----ce--
Q 000546 70 LVERYNAAGGEGNALCGIFPEIRRAW-ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEA----IQ-- 142 (1432)
Q Consensus 70 i~e~~n~~~~q~~~~mGlFpEI~rAW-~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~----I~-- 142 (1432)
|-+.|.|+ ...--..+.|-+.+.- ..-|..+-+||......+ ..+-|-..+|..|-.-.-.|-|..-. |+
T Consensus 228 IR~YhGHl--S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 228 IRHYHGHL--SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred HHHhcccc--ceeEEEeccccceeEEecCCcceEEEeeecccceE-EEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 55667777 6666677889988754 457999999999865544 55677778888887654455444321 21
Q ss_pred -----EEEEEeecceEEEEEeeecCCCC--CCCCCceeEEeeCC--Ce--EeecCCeeEEEEEecCCCcEEEeecCCCEE
Q 000546 143 -----YLLILATPVELILVGVCCSGAGD--GTDPYAEISLQPLP--EY--TVPSDGVTMTCITCTDKGRILLAGRDGNIY 211 (1432)
Q Consensus 143 -----~lLvvaT~~eI~Llgvs~~~~~~--~~~~~~el~L~~~~--~~--sv~tdg~~v~~I~gT~~GRIF~gG~DG~lY 211 (1432)
.-++.-|.....+-+++..+... .+.+..++.=...| .| .++-.+..++++.+.++|-.|-||.+|.++
T Consensus 305 Dl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~ 384 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIM 384 (460)
T ss_pred eeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEE
Confidence 11333355555566666553111 00000111111111 11 233445678899999999999999899877
Q ss_pred EEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 212 ELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 212 El~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
--.|.+.-. .---+|- +-|.. +-.+..|--.++|.+.--|-|=-.+-+|.+|.=.
T Consensus 385 fwdwksg~n-----yQ~~~t~---------vqpGS--l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 385 FWDWKSGHN-----YQRGQTI---------VQPGS--LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred EEecCcCcc-----ccccccc---------ccCCc--cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 655443222 1111221 13321 2346779999999999999999999999999954
No 37
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=63.68 E-value=3.4e+02 Score=32.93 Aligned_cols=164 Identities=16% Similarity=0.269 Sum_probs=92.1
Q ss_pred CeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecce-EEEEEeeecCCCCCCCCCceeEEeeC
Q 000546 100 NSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVE-LILVGVCCSGAGDGTDPYAEISLQPL 178 (1432)
Q Consensus 100 n~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~e-I~Llgvs~~~~~~~~~~~~el~L~~~ 178 (1432)
.-+|.|+.+...+ +++...+...+..|-+=.|.++-+||=++.-+-+ =-+.+-.+++ .+ ..+++.+.
T Consensus 16 ~gI~v~~ld~~~g------~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~-~~-----G~Lt~ln~ 83 (346)
T COG2706 16 QGIYVFNLDTKTG------ELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP-DD-----GRLTFLNR 83 (346)
T ss_pred CceEEEEEeCccc------ccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC-CC-----CeEEEeec
Confidence 3455666543222 3455666777788999999999999988887743 1222222321 11 36777752
Q ss_pred CCeEeecCCeeEEEEEecCCCcEEEeec--CC--CEEEEEEecCCccc-cccceeeeccC---------------c---c
Q 000546 179 PEYTVPSDGVTMTCITCTDKGRILLAGR--DG--NIYELLYTTGSGWY-KRCRKVCHTAG---------------V---G 235 (1432)
Q Consensus 179 ~~~sv~tdg~~v~~I~gT~~GRIF~gG~--DG--~lYEl~Yq~~~gWf-~rC~Kinht~g---------------~---~ 235 (1432)
.+++|-.-+.|.-.++||.-|+.. -| .+|.+. ++|=. .-..++-|+.+ + .
T Consensus 84 ----~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~---~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 84 ----QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ---ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred ----cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc---cCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 344554445565567898887764 33 334432 22322 22222323211 1 0
Q ss_pred ccccccccCcc-------ccc-------------CCCCceEEEEEeCCCceEEEEcC-CCeEEEEEeCCCC
Q 000546 236 NVISRWIVPNV-------FRF-------------GAVDPIVELVFDNERQLLYARTE-EMKLQVFVLGPNG 285 (1432)
Q Consensus 236 S~~~~~llPs~-------~~~-------------~~~d~Ivqi~vD~sR~iLYtLs~-~s~I~vy~Lg~~g 285 (1432)
.++ ++|.+ |.+ .+...=..|++=+..++.|..+| +|+|.||.....+
T Consensus 157 ~~l---~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 157 RYL---VVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred CEE---EEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 010 13331 111 12233457889999999999998 8899999997653
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.26 E-value=35 Score=43.40 Aligned_cols=135 Identities=21% Similarity=0.398 Sum_probs=81.4
Q ss_pred eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeC
Q 000546 99 DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178 (1432)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~ 178 (1432)
|=.|-||||++.-.....|+|-+|-+..|+.-.-.++.|... .+--++.|.=|| .|.
T Consensus 118 Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~-----sLDrTVKVWslg------------------s~~ 174 (794)
T KOG0276|consen 118 DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA-----SLDRTVKVWSLG------------------SPH 174 (794)
T ss_pred ccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee-----eccccEEEEEcC------------------CCC
Confidence 557899999985554478999999999999988889999652 111222233222 123
Q ss_pred CCeEeecCCeeEEEEEecCCC---cEEEeecCCCEEEEEEecCCcccccccee--eeccCccccccccccCcccccCCCC
Q 000546 179 PEYTVPSDGVTMTCITCTDKG---RILLAGRDGNIYELLYTTGSGWYKRCRKV--CHTAGVGNVISRWIVPNVFRFGAVD 253 (1432)
Q Consensus 179 ~~~sv~tdg~~v~~I~gT~~G---RIF~gG~DG~lYEl~Yq~~~gWf~rC~Ki--nht~g~~S~~~~~llPs~~~~~~~d 253 (1432)
|.|+..-+---|+||.-...| .+--|+.|--+-=-+||. |.|-.. -||++.+... ..|.
T Consensus 175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-----k~CV~TLeGHt~Nvs~v~---fhp~-------- 238 (794)
T KOG0276|consen 175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-----KSCVQTLEGHTNNVSFVF---FHPE-------- 238 (794)
T ss_pred CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-----HHHHHHhhcccccceEEE---ecCC--------
Confidence 345554333445676655545 666665566554456775 334322 3666443320 1332
Q ss_pred ceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 254 PIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 254 ~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
-.|+-|=||+|++++|+-.
T Consensus 239 ----------lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 239 ----------LPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred ----------CcEEEEecCCccEEEecCc
Confidence 2366777888888888754
No 39
>PTZ00421 coronin; Provisional
Probab=62.76 E-value=1.7e+02 Score=37.45 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCceEEEEc-CCCeEEEEEeCC
Q 000546 254 PIVELVFDNERQLLYART-EEMKLQVFVLGP 283 (1432)
Q Consensus 254 ~Ivqi~vD~sR~iLYtLs-~~s~I~vy~Lg~ 283 (1432)
.+....+|..-++||+=+ .+++|++|++..
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 344456788888999877 489999999963
No 40
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=62.38 E-value=1e+02 Score=38.81 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=52.0
Q ss_pred CCeeEEEEEecCCCcEEEeec-CC--CEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeC
Q 000546 186 DGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDN 262 (1432)
Q Consensus 186 dg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~ 262 (1432)
....|+++.-.+.|+..+.|. || .||.+. + | .. +.. +. ...++|.-+.+..
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~----------~-------~--~~-----~~~-l~-~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR----------T-------G--EC-----VRK-LK-GHSDGISGLAFSP 298 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEecc----------C-------C--eE-----EEe-ee-ccCCceEEEEECC
Confidence 345678888888886666665 88 444443 1 1 11 111 11 4678999999999
Q ss_pred CCceEEEEcCCCeEEEEEeCC
Q 000546 263 ERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 263 sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
..++|.+-+.++.|+|||+..
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLET 319 (456)
T ss_pred CCCEEEEcCCCccEEEEECCC
Confidence 999999999999999999964
No 41
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.61 E-value=94 Score=36.87 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=87.6
Q ss_pred ccccccccccceeEEEE--eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEee
Q 000546 82 NALCGIFPEIRRAWASV--DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVC 159 (1432)
Q Consensus 82 ~~~mGlFpEI~rAW~tI--Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs 159 (1432)
.+..-|-|.=.-| ++| |..|-+||.-.|..-+ .=.+.+.=+.|.-- |+-.-|+ +++---++| +++.
T Consensus 130 Vt~lsiHPS~KLA-LsVg~D~~lr~WNLV~Gr~a~--v~~L~~~at~v~w~-~~Gd~F~------v~~~~~i~i--~q~d 197 (362)
T KOG0294|consen 130 VTDLSIHPSGKLA-LSVGGDQVLRTWNLVRGRVAF--VLNLKNKATLVSWS-PQGDHFV------VSGRNKIDI--YQLD 197 (362)
T ss_pred cceeEecCCCceE-EEEcCCceeeeehhhcCccce--eeccCCcceeeEEc-CCCCEEE------EEeccEEEE--Eecc
Confidence 6677777764444 444 7899999998876532 12333333333332 4433342 222222222 2221
Q ss_pred ecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecCCCEEEEEEecCCccccccceeeeccCcccccc
Q 000546 160 CSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVIS 239 (1432)
Q Consensus 160 ~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~ 239 (1432)
- -+| |.-.+.-..+.|+..-+.+-.|.||.|+.|--.+ | .+ .
T Consensus 198 ~------------A~v-----~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D----------~------ds---~-- 239 (362)
T KOG0294|consen 198 N------------ASV-----FREIENPKRILCATFLDGSELLVGGDNEWISLKD----------T------DS---D-- 239 (362)
T ss_pred c------------HhH-----hhhhhccccceeeeecCCceEEEecCCceEEEec----------c------CC---C--
Confidence 0 001 1111111446677666778888888885433322 1 11 1
Q ss_pred ccccCcccccCCCCceEEEE-EeC-CCceEEEEcCCCeEEEEEeCCCCCCCcceeeee
Q 000546 240 RWIVPNVFRFGAVDPIVELV-FDN-ERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEE 295 (1432)
Q Consensus 240 ~~llPs~~~~~~~d~Ivqi~-vD~-sR~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~ 295 (1432)
+|-......+.+|..|+ +++ .-.+|-|-|.+|.|.|||+.-+.....+-|++.
T Consensus 240 ---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~ 294 (362)
T KOG0294|consen 240 ---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAEL 294 (362)
T ss_pred ---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEe
Confidence 33222235678888888 544 557999999999999999976644333444443
No 42
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=58.53 E-value=1.9e+02 Score=33.42 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=88.8
Q ss_pred CeEEEEecCCCCCC-CccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCC---CceeEE
Q 000546 100 NSLFLWRFDKWDGQ-CPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDP---YAEISL 175 (1432)
Q Consensus 100 n~L~LW~Y~~~~~~-~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~---~~el~L 175 (1432)
..+-|+|.+.+++. .+.||+-...|++||. ..+=+.+ |+++.||+-. -+.++.
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF--------~~dgrWM---------------yTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGF--------QCDGRWM---------------YTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEE--------eecCeEE---------------EecCCCceEEEEeccCccc
Confidence 56789999876663 2789998888999984 4444433 5555554310 011222
Q ss_pred eeCCCeEeecCCeeEEEEEecCC-CcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCc
Q 000546 176 QPLPEYTVPSDGVTMTCITCTDK-GRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDP 254 (1432)
Q Consensus 176 ~~~~~~sv~tdg~~v~~I~gT~~-GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~ 254 (1432)
+. .|..+ ..|++|+-+++ |..|-|-++|+|+=-+-. +|+ ..-. ++| -...+
T Consensus 118 qR--~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~------------~~~--c~~~----liP-----e~~~~ 169 (311)
T KOG0315|consen 118 QR--NYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLG------------ENS--CTHE----LIP-----EDDTS 169 (311)
T ss_pred ch--hccCC---CCcceEEecCCcceEEeecCCCcEEEEEcc------------CCc--cccc----cCC-----CCCcc
Confidence 22 35554 45888988875 899988889976543311 111 1111 366 34578
Q ss_pred eEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 255 IVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 255 Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
|..+.|+..-..|-.-..+|+.-||+|-.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 99999999999999999999999999953
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.09 E-value=50 Score=40.21 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=65.3
Q ss_pred EEEecCCCcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEc
Q 000546 192 CITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYART 271 (1432)
Q Consensus 192 ~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs 271 (1432)
-|+|++++.|.+.+-||++ ...|- --...+|.+|++-..-+.+|+.+
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~-------~~~W~--------------------------gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNI-------LGNWE--------------------------GVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred eEecCCCCcEEEecCCcch-------hhccc--------------------------ccccceeEEEEEcCCCcEEEEEe
Confidence 4566667777777777765 23452 12345678888888888999999
Q ss_pred CCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcEEEEEecCccCccceEEEEEecCceEE
Q 000546 272 EEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDGRRM 351 (1432)
Q Consensus 272 ~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvsI~pIs~~ES~~l~LVAVT~~G~RL 351 (1432)
.+..|+.|+....-+ +.+. +..-+|.+++. +++.++.||-+...+++|
T Consensus 374 ~d~~i~l~~~e~~~d---r~li--------------------------se~~~its~~i---S~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 374 VDKKIRLYNREARVD---RGLI--------------------------SEEQPITSFSI---SKDGKLALVNLQDQEIHL 421 (519)
T ss_pred cccceeeechhhhhh---hccc--------------------------cccCceeEEEE---cCCCcEEEEEcccCeeEE
Confidence 999999999853211 1111 12345666554 677889999999999998
Q ss_pred EE
Q 000546 352 YL 353 (1432)
Q Consensus 352 Yf 353 (1432)
+=
T Consensus 422 WD 423 (519)
T KOG0293|consen 422 WD 423 (519)
T ss_pred ee
Confidence 73
No 44
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=57.81 E-value=31 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.319 Sum_probs=28.9
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000546 250 GAVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1432)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~ 280 (1432)
...++|..|++.+..+.|.|=+.+++|++||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4578999999999999999999999999997
No 45
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=57.52 E-value=3.9e+02 Score=32.43 Aligned_cols=187 Identities=17% Similarity=0.150 Sum_probs=111.8
Q ss_pred CCCcccccccccCCHHHHHHHHhcCCccccccccccccceeEEEEe---CeEEEEecCCCCCCCccccCCCcceEEEEee
Q 000546 54 WPPLVEVVDTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVD---NSLFLWRFDKWDGQCPEYTGEEQVICAVGLA 130 (1432)
Q Consensus 54 w~p~~~~~~~~~lP~ei~e~~n~~~~q~~~~mGlFpEI~rAW~tID---n~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LV 130 (1432)
|++-+.....-+-|.|=. . +.+|.+-.|..=+|-=+++| .++++++++++. . +......|
T Consensus 125 ~~~v~~~~h~g~~p~~rQ-----~--~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~--L--------~~~~~~~v 187 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQ-----E--SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK--L--------TPADPAEV 187 (346)
T ss_pred ccceeeeecCCCCCCccc-----c--CCccceeeeCCCCCEEEEeecCCceEEEEEcccCc--c--------cccccccc
Confidence 666554445555554211 2 56678888888888888899 899999998433 1 11223334
Q ss_pred ccCCC----cccccceEEEEEe-ecceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecC---CeeEEEEEecCCCcEE
Q 000546 131 KSKPG----IFVEAIQYLLILA-TPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSD---GVTMTCITCTDKGRIL 202 (1432)
Q Consensus 131 kPKpG----VF~~~I~~lLvva-T~~eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~td---g~~v~~I~gT~~GRIF 202 (1432)
||..| +|-++=|+.=||+ -..+|.+++ |++. . .+++-.++ ..++|.| ..--..|.-|.+||--
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~--y~~~-~-----g~~~~lQ~-i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLE--YNPA-V-----GKFEELQT-IDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEE--EcCC-C-----ceEEEeee-eccCccccCCCCceeEEEECCCCCEE
Confidence 76666 8999888777766 334455444 5432 1 23433333 3566644 4567788889999977
Q ss_pred EeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCC-eEEEEEe
Q 000546 203 LAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEM-KLQVFVL 281 (1432)
Q Consensus 203 ~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s-~I~vy~L 281 (1432)
..+.-|.= +=| |.+|+-..|...+... .|+ +--.=....++++-++||...++| +|.||.+
T Consensus 259 YasNRg~d--------sI~---~f~V~~~~g~L~~~~~--~~t-----eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 259 YASNRGHD--------SIA---VFSVDPDGGKLELVGI--TPT-----EGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEecCCCC--------eEE---EEEEcCCCCEEEEEEE--ecc-----CCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 66654410 112 4444444443333111 111 111124567889999999999987 8999999
Q ss_pred CCC
Q 000546 282 GPN 284 (1432)
Q Consensus 282 g~~ 284 (1432)
.+.
T Consensus 321 d~~ 323 (346)
T COG2706 321 DKE 323 (346)
T ss_pred cCC
Confidence 754
No 46
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=56.66 E-value=3.3e+02 Score=32.13 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=24.3
Q ss_pred eEEEEEeCCCceEEEEcCC-CeEEEEEeCCCC
Q 000546 255 IVELVFDNERQLLYARTEE-MKLQVFVLGPNG 285 (1432)
Q Consensus 255 Ivqi~vD~sR~iLYtLs~~-s~I~vy~Lg~~g 285 (1432)
...+++|+..+.||+-+.. +.|.||++..+|
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 4567788888999986654 899999997644
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=54.79 E-value=3.1e+02 Score=34.83 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=31.3
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000546 250 GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
+....|.-+.+-+.+..||+=|-+|.|.-|++|..
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 45678999999999999999999999999999853
No 48
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=52.60 E-value=37 Score=42.67 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=52.9
Q ss_pred CeeEEEEEecCCCcE-EEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCc
Q 000546 187 GVTMTCITCTDKGRI-LLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQ 265 (1432)
Q Consensus 187 g~~v~~I~gT~~GRI-F~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~ 265 (1432)
.-.++.||.++++-| |-+.+|+.|-=++ .+-.|++|+. ....+.+..|+||+.+-
T Consensus 489 ~~~in~vVs~~~~~~~~~~hed~~Ir~~d--------n~~~~~l~s~----------------~a~~~svtslai~~ng~ 544 (577)
T KOG0642|consen 489 YPQINKVVSHPTADITFTAHEDRSIRFFD--------NKTGKILHSM----------------VAHKDSVTSLAIDPNGP 544 (577)
T ss_pred cCccceEEecCCCCeeEecccCCceeccc--------ccccccchhe----------------eeccceecceeecCCCc
Confidence 357889999987555 4444577643222 4455666552 13577888899999999
Q ss_pred eEEEEcCCCeEEEEEeCC
Q 000546 266 LLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 266 iLYtLs~~s~I~vy~Lg~ 283 (1432)
.|-+=+.++.++.|.+..
T Consensus 545 ~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 545 YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred eEEeecCCceeehhhccc
Confidence 999999999999999953
No 49
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=52.44 E-value=1.2e+02 Score=36.54 Aligned_cols=119 Identities=17% Similarity=0.244 Sum_probs=66.7
Q ss_pred CeeEEEEEecCCCcEEEeec--CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCC
Q 000546 187 GVTMTCITCTDKGRILLAGR--DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNER 264 (1432)
Q Consensus 187 g~~v~~I~gT~~GRIF~gG~--DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR 264 (1432)
+-...++.-+++||.++... ...||-+.+....+-+.++..+ .+..-..=..|++++..
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-------------------~~~~G~GPRh~~f~pdg 203 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-------------------KVPPGSGPRHLAFSPDG 203 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-------------------ECSTTSSEEEEEE-TTS
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-------------------ccccCCCCcEEEEcCCc
Confidence 34567788888888666644 2367776665544432111111 12233445678888999
Q ss_pred ceEEEEcCC-CeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcEEEEEecCccCccceEEEE
Q 000546 265 QLLYARTEE-MKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVA 343 (1432)
Q Consensus 265 ~iLYtLs~~-s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvsI~pIs~~ES~~l~LVA 343 (1432)
+++|...+. ++|.||++...... ++.+..++. .|-.........=|+
T Consensus 204 ~~~Yv~~e~s~~v~v~~~~~~~g~-~~~~~~~~~-------------------------------~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 204 KYAYVVNELSNTVSVFDYDPSDGS-LTEIQTIST-------------------------------LPEGFTGENAPAEIA 251 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTE-EEEEEEEES-------------------------------CETTSCSSSSEEEEE
T ss_pred CEEEEecCCCCcEEEEeecccCCc-eeEEEEeee-------------------------------ccccccccCCceeEE
Confidence 999999884 57999999832212 233332211 000011112467778
Q ss_pred EecCceEEEEecC
Q 000546 344 VLSDGRRMYLSTS 356 (1432)
Q Consensus 344 VT~~G~RLYfs~~ 356 (1432)
++.+|.+||.+..
T Consensus 252 ispdg~~lyvsnr 264 (345)
T PF10282_consen 252 ISPDGRFLYVSNR 264 (345)
T ss_dssp E-TTSSEEEEEEC
T ss_pred EecCCCEEEEEec
Confidence 9999999999864
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.67 E-value=2.8e+02 Score=34.89 Aligned_cols=155 Identities=16% Similarity=0.225 Sum_probs=86.8
Q ss_pred ccccccc-ceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCC
Q 000546 85 CGIFPEI-RRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGA 163 (1432)
Q Consensus 85 mGlFpEI-~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~ 163 (1432)
...+|+= --+=.+.|.+|.+||-+......-.+.|-...|.+|... +.=+.++-.+..-.|.|--+.-
T Consensus 209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~--------p~g~~i~Sgs~D~tvriWd~~~--- 277 (456)
T KOG0266|consen 209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS--------PDGNLLVSGSDDGTVRIWDVRT--- 277 (456)
T ss_pred eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec--------CCCCEEEEecCCCcEEEEeccC---
Confidence 3334444 334467889999999844322224455666666666542 2122222222223333333211
Q ss_pred CCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccc
Q 000546 164 GDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWI 242 (1432)
Q Consensus 164 ~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~l 242 (1432)
+ +.. ..+....+ .|+++.-..+|+.+..+. ||.|..-... +|.++|.+.
T Consensus 278 --~-------~~~--~~l~~hs~--~is~~~f~~d~~~l~s~s~d~~i~vwd~~---~~~~~~~~~-------------- 327 (456)
T KOG0266|consen 278 --G-------ECV--RKLKGHSD--GISGLAFSPDGNLLVSASYDGTIRVWDLE---TGSKLCLKL-------------- 327 (456)
T ss_pred --C-------eEE--EeeeccCC--ceEEEEECCCCCEEEEcCCCccEEEEECC---CCceeeeec--------------
Confidence 0 111 11333333 577777788999999988 9976665532 232111111
Q ss_pred cCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 243 VPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 243 lPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+.. .-... ++..+...+.-.+|++-+.+++++.|++..
T Consensus 328 ~~~--~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 328 LSG--AENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRS 365 (456)
T ss_pred ccC--CCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccC
Confidence 110 00122 678888889999999999999999999974
No 51
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.03 E-value=4.7e+02 Score=32.63 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=29.5
Q ss_pred cccccccccccceeE------EEEeCeEEEEecCCCCCCCccccCCCcceEEEEe
Q 000546 81 GNALCGIFPEIRRAW------ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGL 129 (1432)
Q Consensus 81 ~~~~mGlFpEI~rAW------~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~L 129 (1432)
.++.-=++=-.+|.| -+.|+++.|||.+.+... ..+.-....|.++..
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~-~s~~~~~k~Vq~l~w 294 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK-SSITHHGKKVQTLEW 294 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc-eehhhcCCceeEEEe
Confidence 444333444555554 456999999999887764 334334455666654
No 52
>PTZ00420 coronin; Provisional
Probab=50.55 E-value=1.2e+02 Score=39.51 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=17.1
Q ss_pred EEecCCCcEEEeec-CCCEEEEEEec
Q 000546 193 ITCTDKGRILLAGR-DGNIYELLYTT 217 (1432)
Q Consensus 193 I~gT~~GRIF~gG~-DG~lYEl~Yq~ 217 (1432)
..-.++|.+|++|+ ||+|+=..+..
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccC
Confidence 33356899999997 99665555543
No 53
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=49.38 E-value=2e+02 Score=38.39 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=83.2
Q ss_pred EEEEEeecceEEEEEeeecCCCCCCC---CCceeEEeeCCCeEeecCCeeEEEEEecCCCc-EEEeecCC-CEEEEEEec
Q 000546 143 YLLILATPVELILVGVCCSGAGDGTD---PYAEISLQPLPEYTVPSDGVTMTCITCTDKGR-ILLAGRDG-NIYELLYTT 217 (1432)
Q Consensus 143 ~lLvvaT~~eI~Llgvs~~~~~~~~~---~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GR-IF~gG~DG-~lYEl~Yq~ 217 (1432)
..|.+.=+.+..++.+........+. ..+.-.|.++ +..+..|..|.-+++|+ +=+.|..| +|-||- +.
T Consensus 42 ~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~-----~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP-~r 115 (717)
T PF10168_consen 42 GDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPS-----NPPLFEVHQISLNPTGSLLALVGPRGVVVLELP-RR 115 (717)
T ss_pred CEEEEEECCCCEEEEEeeccccccccCccccCcceeecC-----CCCceeEEEEEECCCCCEEEEEcCCcEEEEEec-cc
Confidence 35677777777777776543322111 1122334433 33458899999999999 55788877 677773 21
Q ss_pred --CCccc--cccceeeeccCccccccccccCcccccCCCCceEEEEEeCC---CceEEEEcCCCeEEEEEeCCCCCCCcc
Q 000546 218 --GSGWY--KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNE---RQLLYARTEEMKLQVFVLGPNGDGPLK 290 (1432)
Q Consensus 218 --~~gWf--~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~s---R~iLYtLs~~s~I~vy~Lg~~g~~~~~ 290 (1432)
..|-| .+..-.|-|..+... +|.....-.|.|+.-=+. -.-|-.|+++++||+|++. +...+ .
T Consensus 116 ~g~~~~~~~g~~~i~Crt~~v~~~--------~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~-~~~~p-~ 185 (717)
T PF10168_consen 116 WGKNGEFEDGKKEINCRTVPVDER--------FFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS-DPQHP-W 185 (717)
T ss_pred cCccccccCCCcceeEEEEEechh--------hccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC-CCCCC-e
Confidence 13445 455666777554443 222234456677665443 3567799999999999996 55555 5
Q ss_pred eeeee
Q 000546 291 KVAEE 295 (1432)
Q Consensus 291 ~v~~~ 295 (1432)
.|..+
T Consensus 186 ~v~~~ 190 (717)
T PF10168_consen 186 QVLSL 190 (717)
T ss_pred EEEEc
Confidence 55544
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=48.66 E-value=1e+02 Score=38.71 Aligned_cols=168 Identities=18% Similarity=0.250 Sum_probs=97.9
Q ss_pred cccccccccccccee-EEEEeCeEEEEecCCCCCCCccccC----CCcceEEEEeeccCCCcccccceEEEEEeecceEE
Q 000546 80 EGNALCGIFPEIRRA-WASVDNSLFLWRFDKWDGQCPEYTG----EEQVICAVGLAKSKPGIFVEAIQYLLILATPVELI 154 (1432)
Q Consensus 80 q~~~~mGlFpEI~rA-W~tIDn~L~LW~Y~~~~~~~~~fd~----~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~ 154 (1432)
+..+-.++=|.=.|. =-.+|+.+-+|||..-+--+-+|-. ..|.|-++..- ..=.-+|||++...+.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys--------~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS--------VTGDQILVVSGSAQAK 239 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeec--------CCCCeEEEEecCccee
Confidence 555566665655554 3479999999999743322234443 24667666542 2334569999999988
Q ss_pred EEE------eeecCCCC-----------------------------------------CCCCCceeEEeeCCCeEeecCC
Q 000546 155 LVG------VCCSGAGD-----------------------------------------GTDPYAEISLQPLPEYTVPSDG 187 (1432)
Q Consensus 155 Llg------vs~~~~~~-----------------------------------------~~~~~~el~L~~~~~~sv~tdg 187 (1432)
||- +.|.++.. .++..+.++++-+. +-.|
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k----~~~g 315 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK----PAGG 315 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec----cCCC
Confidence 873 22322110 00111233333221 2223
Q ss_pred --eeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccc---cccceeeecc--CccccccccccCcccccCCCCceEEEE
Q 000546 188 --VTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWY---KRCRKVCHTA--GVGNVISRWIVPNVFRFGAVDPIVELV 259 (1432)
Q Consensus 188 --~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf---~rC~Kinht~--g~~S~~~~~llPs~~~~~~~d~Ivqi~ 259 (1432)
+.++..+-..+|--|.+|- ||.|-=-.| -+|+ .-|-|--|.. ++.|+ +
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~---~~~~v~p~~~vk~AH~~g~~Itsi---------------------~ 371 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK---GSRTVRPVMKVKDAHLPGQDITSI---------------------S 371 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeec---CCcccccceEeeeccCCCCceeEE---------------------E
Confidence 3444444446788787776 997544343 5676 4455556664 34443 3
Q ss_pred EeCCCceEEEEcCCCeEEEEEeCC
Q 000546 260 FDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 260 vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+-.--|+|-+++.+++++||||..
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred eccccchhhhccCCCceeeeeccc
Confidence 334568999999999999999964
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=47.23 E-value=2.9e+02 Score=35.09 Aligned_cols=137 Identities=16% Similarity=0.233 Sum_probs=82.4
Q ss_pred EEEeCeEEEEecCCCCCCCccccCCCcceEEEEe-eccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeE
Q 000546 96 ASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGL-AKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 96 ~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~L-VkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~ 174 (1432)
+..|++|-.-++.++.. .... .|.| .+|| |+=+..=..++||++-.+|.||-= .
T Consensus 380 ~g~Dd~l~~~~~~~~~~-----t~~~----~~~lg~QP~-~lav~~d~~~avv~~~~~iv~l~~-------~-------- 434 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGY-----TKSE----VVKLGSQPK-GLAVLSDGGTAVVACISDIVLLQD-------Q-------- 434 (603)
T ss_pred EecCCeEEEEecccCcc-----cccc----eeecCCCce-eEEEcCCCCEEEEEecCcEEEEec-------C--------
Confidence 45688888888765332 1111 1444 3566 554444455788888888877650 0
Q ss_pred EeeCCCeEeecCCeeEEEEEecCCCcEE-EeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCC
Q 000546 175 LQPLPEYTVPSDGVTMTCITCTDKGRIL-LAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVD 253 (1432)
Q Consensus 175 L~~~~~~sv~tdg~~v~~I~gT~~GRIF-~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d 253 (1432)
+..+++|+ +...++++.+++|.-+ .||+||+|+= |+=+.+=. .+-........
T Consensus 435 ---~~~~~~~~-~y~~s~vAv~~~~~~vaVGG~Dgkvhv--ysl~g~~l--------------------~ee~~~~~h~a 488 (603)
T KOG0318|consen 435 ---TKVSSIPI-GYESSAVAVSPDGSEVAVGGQDGKVHV--YSLSGDEL--------------------KEEAKLLEHRA 488 (603)
T ss_pred ---Ccceeecc-ccccceEEEcCCCCEEEEecccceEEE--EEecCCcc--------------------cceeeeecccC
Confidence 12356664 5788899999887766 5667998653 32111110 11111123456
Q ss_pred ceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 254 PIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 254 ~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+|..|++-+.-.+|-+=.....+-+|+...
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 677777777777777777777899999864
No 56
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=46.40 E-value=1.4e+02 Score=37.94 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=95.9
Q ss_pred cccccee--EEEEeCeEEEEecCC---CC--CC--CccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEe
Q 000546 88 FPEIRRA--WASVDNSLFLWRFDK---WD--GQ--CPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGV 158 (1432)
Q Consensus 88 FpEI~rA--W~tIDn~L~LW~Y~~---~~--~~--~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgv 158 (1432)
||-..-. =++.|+.|-|||..+ .. ++ ..+|++-+-.|++|.+.+ +.+|+.=..+.-.|..--+
T Consensus 302 ~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--------n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 302 FHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--------NGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred cCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--------CceEEEeeccCceeeeecc
Confidence 5555544 456789999999932 11 11 157788888888887643 4566555555555544443
Q ss_pred eecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecC-CCcEEEeecCCCEEEEEEecCCc-cc-cccceeeecc-Cc
Q 000546 159 CCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTD-KGRILLAGRDGNIYELLYTTGSG-WY-KRCRKVCHTA-GV 234 (1432)
Q Consensus 159 s~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~-~GRIF~gG~DG~lYEl~Yq~~~g-Wf-~rC~Kinht~-g~ 234 (1432)
--+..++ |+ .+.....+. |.=-|| .+--+..+. .-|+--+..||-|+-..|..++- -| .+|.-.=|++ .+
T Consensus 374 p~n~dp~--ds-~dp~vl~~~-l~Ghtd--avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 374 PPNQDPD--DS-YDPSVLSGT-LLGHTD--AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred CCCCCcc--cc-cCcchhccc-eecccc--ceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 3111111 00 111122121 322333 222334443 35555566688777777776654 24 5554433321 10
Q ss_pred ---------ccccccc-------------ccCcccccC---CCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 235 ---------GNVISRW-------------IVPNVFRFG---AVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 235 ---------~S~~~~~-------------llPs~~~~~---~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
.|+-... +++|. ..+ ....|..++--++-.+.|+..++..|++|+-.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~-~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS-ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeecccc-CCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 1110000 01110 111 23678899999999999999999999999963
No 57
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=44.29 E-value=4.6e+02 Score=31.94 Aligned_cols=175 Identities=14% Similarity=0.252 Sum_probs=98.4
Q ss_pred EeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccc----------------------cceEEEEEeecceEEE
Q 000546 98 VDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVE----------------------AIQYLLILATPVELIL 155 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~----------------------~I~~lLvvaT~~eI~L 155 (1432)
-|..+-+||...+-= -...-|.-.++-.|+.-+--|=+|-- |..-++++++.-.+-+
T Consensus 171 ~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldv 249 (460)
T KOG0285|consen 171 ADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV 249 (460)
T ss_pred CCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEecccccee
Confidence 478899999975431 14455666677777776666666642 2344677776633332
Q ss_pred EEeeecCCCCCCCCCceeEE--eeCCCeEe---ecCCeeEEEEEecC-CCcEEEeecCC--CEEEEEEecCCc-cc--c-
Q 000546 156 VGVCCSGAGDGTDPYAEISL--QPLPEYTV---PSDGVTMTCITCTD-KGRILLAGRDG--NIYELLYTTGSG-WY--K- 223 (1432)
Q Consensus 156 lgvs~~~~~~~~~~~~el~L--~~~~~~sv---~tdg~~v~~I~gT~-~GRIF~gG~DG--~lYEl~Yq~~~g-Wf--~- 223 (1432)
|.-+ +.| . .+.+ ..+. ++| +=....|+.+.+.+ ++.|.-|+.|+ +||.+.|-..-- -+ |
T Consensus 250 l~t~---grD---s--t~RvWDiRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk 320 (460)
T KOG0285|consen 250 LVTG---GRD---S--TIRVWDIRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK 320 (460)
T ss_pred EEec---CCc---c--eEEEeeeccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc
Confidence 2211 111 1 1111 1122 233 22346788998887 89999999999 899999865331 11 1
Q ss_pred ccceeeec---cCcc----ccccccccCc--cc-ccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 224 RCRKVCHT---AGVG----NVISRWIVPN--VF-RFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 224 rC~Kinht---~g~~----S~~~~~llPs--~~-~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
-.+-+|.. ..+. ..|=.|=+|- |+ .++....|+--.-=++-+++.+=++||+|-.||-.
T Consensus 321 svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 321 SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecC
Confidence 11112211 0111 1111233443 21 23455556654445778899999999999999985
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.64 E-value=2.3e+02 Score=34.90 Aligned_cols=161 Identities=17% Similarity=0.190 Sum_probs=104.0
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCccc---------------ccceEEEEEeecceEEEEEeeec
Q 000546 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFV---------------EAIQYLLILATPVELILVGVCCS 161 (1432)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~---------------~~I~~lLvvaT~~eI~Llgvs~~ 161 (1432)
+-|+.+++||.++..- ...+-|-.+.++++.+-+-..-|-- --.+-+|++.+-.+|+.=++++-
T Consensus 238 s~d~~~r~Wnvd~~r~-~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~ 316 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRL-RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVI 316 (459)
T ss_pred cCCCceeeeeccchhh-hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeee
Confidence 4567899999875432 3566677777887776543331110 01466788888888887666665
Q ss_pred CCCCCCCCCceeEEee----CCCeEeecCCeeEEEEEecCCCcEEEee-cCCCEEEEEEecCCccccccceeeeccCccc
Q 000546 162 GAGDGTDPYAEISLQP----LPEYTVPSDGVTMTCITCTDKGRILLAG-RDGNIYELLYTTGSGWYKRCRKVCHTAGVGN 236 (1432)
Q Consensus 162 ~~~~~~~~~~el~L~~----~~~~sv~tdg~~v~~I~gT~~GRIF~gG-~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S 236 (1432)
++.. + +.+.+.. ++..++|..| -|+++.-+.+|+=-+.+ +|..|-=+. -|-.-|+|+.+...
T Consensus 317 SgH~--D--kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viD--------lRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 317 SGHF--D--KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVID--------LRTKEIRQTFSAEG 383 (459)
T ss_pred eccc--c--cceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeee--------cccccEEEEeeccc
Confidence 4321 1 2355543 3458899988 68888878777655544 577655544 45667777754333
Q ss_pred cccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 237 VISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 237 ~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+ + -..| ....++-+.+.++-+=|.+|.|-+|++..
T Consensus 384 ~----------k-~asD-wtrvvfSpd~~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 384 F----------K-CASD-WTRVVFSPDGSYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred c----------c-cccc-cceeEECCCCceeeeccCCCcEEEEEccC
Confidence 3 1 1222 56667777888999999999999999953
No 59
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level. These fungal lectins, such as Aleuria aurantialectin (AAL, P18891 from SWISSPROT), specifically recognise fucosylated glycans. AAL is a dimeric protein, with each monomer being organised into a six-bladed beta-propeller fold and a small antiparallel two-stranded beta-sheet. The beta-propeller fold is important in fucose recognition; five binding pockets are found between the propeller blades. The small beta-sheet, on the other hand, is involved in the dimerisation process []. ; PDB: 1IUC_A 1OFZ_A 1IUB_A 2BS5_A 3ZWE_B 3ZW1_B 3ZZV_A 3ZW2_A 3ZW0_A 2BS6_C ....
Probab=42.94 E-value=50 Score=39.48 Aligned_cols=40 Identities=35% Similarity=0.667 Sum_probs=27.8
Q ss_pred eecCCeeEEEEEecC-CC---cEEEeecCCCEEEEEEecCCccc
Q 000546 183 VPSDGVTMTCITCTD-KG---RILLAGRDGNIYELLYTTGSGWY 222 (1432)
Q Consensus 183 v~tdg~~v~~I~gT~-~G---RIF~gG~DG~lYEl~Yq~~~gWf 222 (1432)
+|--|+-++.+.-|+ +| ||||-+.|+.|.|..|.++.||+
T Consensus 154 ~pGtgiaat~~~~t~~ngp~iRVYyQ~~d~~I~e~~yd~~~gW~ 197 (311)
T PF07938_consen 154 LPGTGIAATAFRYTDTNGPSIRVYYQADDLNIRERCYDSSKGWS 197 (311)
T ss_dssp STT--EEEEEE-----TTTEEEEEEEEETTEEEEEEESSSS-EE
T ss_pred CCCCCcceeEEeecccCCCcEEEEEECCCCCEEEEEEcCCCcee
Confidence 344456777775555 56 89999999999999999888997
No 60
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.61 E-value=23 Score=28.60 Aligned_cols=19 Identities=37% Similarity=0.683 Sum_probs=15.8
Q ss_pred cCCCcEEEeecCCCEEEEE
Q 000546 196 TDKGRILLAGRDGNIYELL 214 (1432)
Q Consensus 196 T~~GRIF~gG~DG~lYEl~ 214 (1432)
..+|+||+++.||+||-|.
T Consensus 19 v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 19 VAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp ECTSEEEEE-TTSEEEEEE
T ss_pred EECCEEEEEcCCCEEEEEe
Confidence 4689999999999999875
No 61
>PTZ00420 coronin; Provisional
Probab=41.94 E-value=9.3e+02 Score=31.49 Aligned_cols=141 Identities=9% Similarity=0.094 Sum_probs=77.3
Q ss_pred EeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEe-ecceEEEEEeeecCCCCCCCCCceeEEe
Q 000546 98 VDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILA-TPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvva-T~~eI~Llgvs~~~~~~~~~~~~el~L~ 176 (1432)
.+..+.||+....... ..+.+-...|.+|..- |. -..+|+.+ -.-.|.|.-+.-.. ..+.-.
T Consensus 52 ~~gvI~L~~~~r~~~v-~~L~gH~~~V~~lafs-P~-------~~~lLASgS~DgtIrIWDi~t~~--------~~~~~i 114 (568)
T PTZ00420 52 LIGAIRLENQMRKPPV-IKLKGHTSSILDLQFN-PC-------FSEILASGSEDLTIRVWEIPHND--------ESVKEI 114 (568)
T ss_pred ceeEEEeeecCCCceE-EEEcCCCCCEEEEEEc-CC-------CCCEEEEEeCCCeEEEEECCCCC--------cccccc
Confidence 4677888887654332 4466667788888762 22 11223222 23345555442110 001001
Q ss_pred eCCCeEeecCCeeEEEEEecCCCc-EEEe-ecCCCE--EEEEEecCCccccccceeeeccCccccccccccCcccccCCC
Q 000546 177 PLPEYTVPSDGVTMTCITCTDKGR-ILLA-GRDGNI--YELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAV 252 (1432)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gT~~GR-IF~g-G~DG~l--YEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~ 252 (1432)
..+...+....-.|++|.-+++|+ |+++ |.||.| |.+. .. .. +. .+...
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~--tg-------~~---------------~~---~i~~~ 167 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE--NE-------KR---------------AF---QINMP 167 (568)
T ss_pred ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC--CC-------cE---------------EE---EEecC
Confidence 112123333345688888888876 4444 558854 4332 10 00 00 01123
Q ss_pred CceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 253 DPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 253 d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
+.|..+.++..-++|.+=+.+++|++||+.
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 567888888888899988889999999985
No 62
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=41.79 E-value=2.1e+02 Score=36.24 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=42.2
Q ss_pred CCCCCCccchhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHhhCCCC
Q 000546 884 CPSYFKESDYKFFLAVECLERAAVTSDSEEKENLAREAFNFLSKVPES 931 (1432)
Q Consensus 884 Cpsf~s~dD~~~~KA~E~L~~Ak~~~~~~~r~~~L~eAl~Lf~kv~~~ 931 (1432)
|-+||.-|.-..-.|.|.+++|=+.+|+..|-++.++||.+....++.
T Consensus 157 HQtfFtcd~D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdA 204 (539)
T PF04184_consen 157 HQTFFTCDTDALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADA 204 (539)
T ss_pred cceeEecCCCccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHH
Confidence 668898776677899999999999999999999999999999876643
No 63
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=40.82 E-value=2.8e+02 Score=33.18 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=76.5
Q ss_pred EEEeCeEEEEecCCCCCCC-ccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeE
Q 000546 96 ASVDNSLFLWRFDKWDGQC-PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 96 ~tIDn~L~LW~Y~~~~~~~-~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~ 174 (1432)
.+-||.+.|||..+|+... +.| +..|..+.+-.-|-+ ++|||+++=--+-+.|++.. -.
T Consensus 83 sS~D~si~lwDl~~gs~l~rirf---~spv~~~q~hp~k~n---------~~va~~~~~sp~vi~~s~~~--------h~ 142 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIRF---DSPVWGAQWHPRKRN---------KCVATIMEESPVVIDFSDPK--------HS 142 (405)
T ss_pred ecCCceeEEEeccCCCceeEEEc---cCccceeeeccccCC---------eEEEEEecCCcEEEEecCCc--------ee
Confidence 3568999999999888531 444 577888777555544 55667666443334444211 11
Q ss_pred EeeCCCeEeecCC---eeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccC
Q 000546 175 LQPLPEYTVPSDG---VTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFG 250 (1432)
Q Consensus 175 L~~~~~~sv~tdg---~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~ 250 (1432)
+.|+ .+|| ..-++.+-+..|.+-..|. -|- =+.|.+ ||.-. +-| ++..
T Consensus 143 ~Lp~-----d~d~dln~sas~~~fdr~g~yIitGtsKGk--llv~~a------------~t~e~--------vas-~rit 194 (405)
T KOG1273|consen 143 VLPK-----DDDGDLNSSASHGVFDRRGKYIITGTSKGK--LLVYDA------------ETLEC--------VAS-FRIT 194 (405)
T ss_pred eccC-----CCccccccccccccccCCCCEEEEecCcce--EEEEec------------chhee--------eee-eeec
Confidence 1111 1121 1111122345676666664 443 233433 12110 111 1333
Q ss_pred CCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 251 AVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 251 ~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
....|+||.+-.-...|-.=+.+-+||+|++.
T Consensus 195 s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 35678888886666677777888899999985
No 64
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=40.42 E-value=2.4e+02 Score=36.59 Aligned_cols=135 Identities=22% Similarity=0.335 Sum_probs=71.4
Q ss_pred EeCeEEEEecCCCCC-CCccccCCCcceEEEEee-ccCCCcccccceEEEEEeecce-EEEEEeeecCCCCCCCCCceeE
Q 000546 98 VDNSLFLWRFDKWDG-QCPEYTGEEQVICAVGLA-KSKPGIFVEAIQYLLILATPVE-LILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~~-~~~~fd~~~~~I~aV~LV-kPKpGVF~~~I~~lLvvaT~~e-I~Llgvs~~~~~~~~~~~~el~ 174 (1432)
.|.++|||||+.+-. ....| +.++.-.|+ -||-+|.- +|+... -+|++=.. .+.|.
T Consensus 138 LD~~IflWDin~~~~~l~~s~----n~~t~~sl~sG~k~siYS--------LA~N~t~t~ivsGgt---------ek~lr 196 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATLVASF----NNVTVNSLGSGPKDSIYS--------LAMNQTGTIIVSGGT---------EKDLR 196 (735)
T ss_pred CCccEEEEEccCcchhhhhhc----cccccccCCCCCccceee--------eecCCcceEEEecCc---------ccceE
Confidence 699999999987533 22445 466666666 78877653 222211 11111111 12344
Q ss_pred EeeCC-----Ce--EeecCCeeEEEEEecCCC-cEEEeecCC--CEEEEEEecCCccccccceeeeccCccccccccccC
Q 000546 175 LQPLP-----EY--TVPSDGVTMTCITCTDKG-RILLAGRDG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVP 244 (1432)
Q Consensus 175 L~~~~-----~~--sv~tdg~~v~~I~gT~~G-RIF~gG~DG--~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llP 244 (1432)
++ +| .| .-.||| |.++.-.++| |+.-+++|| .||.|-= +||-- | + .+|
T Consensus 197 ~w-Dprt~~kimkLrGHTdN--Vr~ll~~dDGt~~ls~sSDgtIrlWdLgq-------QrCl~---T-----~----~vH 254 (735)
T KOG0308|consen 197 LW-DPRTCKKIMKLRGHTDN--VRVLLVNDDGTRLLSASSDGTIRLWDLGQ-------QRCLA---T-----Y----IVH 254 (735)
T ss_pred Ee-ccccccceeeeeccccc--eEEEEEcCCCCeEeecCCCceEEeeeccc-------cceee---e-----E----Eec
Confidence 43 22 12 224664 5566667887 455555599 7777652 34432 2 2 122
Q ss_pred cccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 245 NVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 245 s~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
+|.+=.+.++++=..+|+=..++.|-.=+|-
T Consensus 255 -------~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 255 -------KEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred -------cCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 1222233344555567777777777777764
No 65
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=40.42 E-value=1.3e+02 Score=35.87 Aligned_cols=126 Identities=20% Similarity=0.316 Sum_probs=74.2
Q ss_pred EEEecCCCc-EE-EeecCCCEEEEEEecC-Cccc---ccccee-eeccCccccccccccCccccc-CCCCceEEEEEeCC
Q 000546 192 CITCTDKGR-IL-LAGRDGNIYELLYTTG-SGWY---KRCRKV-CHTAGVGNVISRWIVPNVFRF-GAVDPIVELVFDNE 263 (1432)
Q Consensus 192 ~I~gT~~GR-IF-~gG~DG~lYEl~Yq~~-~gWf---~rC~Ki-nht~g~~S~~~~~llPs~~~~-~~~d~Ivqi~vD~s 263 (1432)
.|-..+++| .| ++|.-|-|--|.|-.. +..| +||.|| |.--..+-. .|=.+-+- .....=|+.-+|+.
T Consensus 233 giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~ 308 (406)
T KOG2919|consen 233 GIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPK 308 (406)
T ss_pred eeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCC
Confidence 344444433 44 4556777888888532 2355 677776 333211111 01111121 23566788899999
Q ss_pred CceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcEEEEEecCccCccceEEEE
Q 000546 264 RQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVA 343 (1432)
Q Consensus 264 R~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvsI~pIs~~ES~~l~LVA 343 (1432)
-++|-+=+.+|.|+|||+..-|+.. +| . ...+.-..=|+.+|+-+ |+
T Consensus 309 ~~~LasG~tdG~V~vwdlk~~gn~~--sv-------~----------------~~~sd~vNgvslnP~mp--------il 355 (406)
T KOG2919|consen 309 GEILASGDTDGSVRVWDLKDLGNEV--SV-------T----------------GNYSDTVNGVSLNPIMP--------IL 355 (406)
T ss_pred CceeeccCCCccEEEEecCCCCCcc--cc-------c----------------ccccccccceecCcccc--------ee
Confidence 9999999999999999998777632 11 0 11123345567777532 36
Q ss_pred EecCceEEEEe
Q 000546 344 VLSDGRRMYLS 354 (1432)
Q Consensus 344 VT~~G~RLYfs 354 (1432)
-|+.|-|+|=-
T Consensus 356 atssGqr~f~~ 366 (406)
T KOG2919|consen 356 ATSSGQRIFKY 366 (406)
T ss_pred eeccCceeecC
Confidence 68889998853
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=39.77 E-value=6.8e+02 Score=29.94 Aligned_cols=144 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred eCeEEEEe-cCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEee------------------
Q 000546 99 DNSLFLWR-FDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVC------------------ 159 (1432)
Q Consensus 99 Dn~L~LW~-Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs------------------ 159 (1432)
|..+|||| |.+.+.. ..--|=+.+|.-|. |..+=.||+-..|...|...-+.
T Consensus 68 Dr~I~LWnv~gdceN~-~~lkgHsgAVM~l~--------~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~ 138 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENF-WVLKGHSGAVMELH--------GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSL 138 (338)
T ss_pred cceEEEEeccccccce-eeeccccceeEeee--------eccCCCEEEEecCCceEEEEecccceeeehhccccceeeec
Q ss_pred ----------ecCCCCCCCCCceeEEeeCCCeE------eecCCeeEEEEEecC-CCcEEEeecCCCEEEEEEecCCccc
Q 000546 160 ----------CSGAGDGTDPYAEISLQPLPEYT------VPSDGVTMTCITCTD-KGRILLAGRDGNIYELLYTTGSGWY 222 (1432)
Q Consensus 160 ----------~~~~~~~~~~~~el~L~~~~~~s------v~tdg~~v~~I~gT~-~GRIF~gG~DG~lYEl~Yq~~~gWf 222 (1432)
.+...++ .+.|+ .+- ...+-..++.+.-.+ .-.||-||=|+.|---.-..+++-
T Consensus 139 ~p~rrg~~lv~SgsdD~-----t~kl~---D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~- 209 (338)
T KOG0265|consen 139 DPSRRGPQLVCSGSDDG-----TLKLW---DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL- 209 (338)
T ss_pred CccccCCeEEEecCCCc-----eEEEE---eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcce-
Q ss_pred cccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 223 KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 223 ~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
|+.. +..|+|+.|.+=..-..|-+.+=+.++++||+-+
T Consensus 210 -------~~ls----------------Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 210 -------YTLS----------------GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred -------EEee----------------cccCceeeEEeccCCCccccccccceEEEEEecc
No 67
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=39.49 E-value=4.3e+02 Score=32.26 Aligned_cols=35 Identities=29% Similarity=0.558 Sum_probs=30.8
Q ss_pred CCCCceEEEEEeCCCceEEEEcCCC-eEEEEEeCCCC
Q 000546 250 GAVDPIVELVFDNERQLLYARTEEM-KLQVFVLGPNG 285 (1432)
Q Consensus 250 ~~~d~Ivqi~vD~sR~iLYtLs~~s-~I~vy~Lg~~g 285 (1432)
..+.+|--|+++.+-++|-|=|+|| .||||++ ++|
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v-~~G 206 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSV-PEG 206 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEc-CCc
Confidence 3578899999999999999999999 5899999 456
No 68
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=38.48 E-value=64 Score=36.93 Aligned_cols=63 Identities=27% Similarity=0.381 Sum_probs=41.0
Q ss_pred CCCcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeE
Q 000546 197 DKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKL 276 (1432)
Q Consensus 197 ~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I 276 (1432)
+.|-|||+|.||++|-..- |+|=|+|-. + +..|-|-.++--+.-.-+.+=+|+|++
T Consensus 125 ~enSi~~AgGD~~~y~~dl--E~G~i~r~~---------------------r-GHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDL--EDGRIQREY---------------------R-GHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred CCCcEEEecCCeEEEEEEe--cCCEEEEEE---------------------c-CCcceeeeeeecccCcceeecCCCccE
Confidence 4799999999999998874 344432211 1 223334444443444455677899999
Q ss_pred EEEEeCC
Q 000546 277 QVFVLGP 283 (1432)
Q Consensus 277 ~vy~Lg~ 283 (1432)
||||+..
T Consensus 181 RvWd~kt 187 (325)
T KOG0649|consen 181 RVWDTKT 187 (325)
T ss_pred EEEeccc
Confidence 9999953
No 69
>PTZ00421 coronin; Provisional
Probab=37.21 E-value=6.3e+02 Score=32.34 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=28.0
Q ss_pred CCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 251 AVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 251 ~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
..+.|..++..+..++|++-+.+++|++||+..
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCC
Confidence 356688888888888999999999999999853
No 70
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=36.39 E-value=7.7e+02 Score=28.99 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=47.6
Q ss_pred eeEEEEEecCCCcEEEee-c-CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCc
Q 000546 188 VTMTCITCTDKGRILLAG-R-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQ 265 (1432)
Q Consensus 188 ~~v~~I~gT~~GRIF~gG-~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~ 265 (1432)
.....++-+++|+.++.. + ++.|.=+.+....|=++ +-++ + +. +|.- +.....-..|.+++..+
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~----~~~~--~-~~-----~p~~--~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE----CVQT--L-DM-----MPAD--FSDTRWAADIHITPDGR 240 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE----EEEE--E-ec-----CCCc--CCCCccceeEEECCCCC
Confidence 334566778888876555 3 66555444443222110 1111 1 11 3321 11122334688889999
Q ss_pred eEEEEcC-CCeEEEEEeCCCC
Q 000546 266 LLYARTE-EMKLQVFVLGPNG 285 (1432)
Q Consensus 266 iLYtLs~-~s~I~vy~Lg~~g 285 (1432)
.||+-.+ .++|.||++..++
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCC
Confidence 9999855 5799999998765
No 71
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=36.37 E-value=1.3e+02 Score=37.45 Aligned_cols=145 Identities=19% Similarity=0.380 Sum_probs=60.4
Q ss_pred eEeecCCeeEEEEEe---cCCCcEEEeec-CCCEEEEEEecCCccc-cccceeeeccCccccccccccCccc-ccCCCCc
Q 000546 181 YTVPSDGVTMTCITC---TDKGRILLAGR-DGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVF-RFGAVDP 254 (1432)
Q Consensus 181 ~sv~tdg~~v~~I~g---T~~GRIF~gG~-DG~lYEl~Yq~~~gWf-~rC~Kinht~g~~S~~~~~llPs~~-~~~~~d~ 254 (1432)
+-++-+|.....|.- -+.--=|.|.. .++||-+.-..+..|- ++.--|---. ...|.+|.++ .|+...+
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~-----v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK-----VEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-------SS---GGGGGG-EE--
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc-----cCcccccccccccccCCC
Confidence 344444544444433 22445577766 6789888766667785 4432221100 0124566654 2333333
Q ss_pred -eEEEEEeCCCceEEE-EcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcEEEEEecC
Q 000546 255 -IVELVFDNERQLLYA-RTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLS 332 (1432)
Q Consensus 255 -Ivqi~vD~sR~iLYt-Ls~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvsI~pIs 332 (1432)
|.+|.|=---+.||. ---.|.|+-||+.... .+ +.+.++ ..|+ .+ .+. +.+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~-~P-kl~gqv---------~lGG-~~-~~~--------------~~~ 365 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPF-NP-KLVGQV---------FLGG-SI-RKG--------------DHP 365 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTT-S--EEEEEE---------E-BT-TT-T-B----------------T
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCC-CC-cEEeEE---------EECc-Ee-ccC--------------CCc
Confidence 556555444457776 4457889999997543 33 555443 1111 00 010 111
Q ss_pred ccCcc----ceEEEEEecCceEEEEecCC
Q 000546 333 TLESK----WLHLVAVLSDGRRMYLSTSA 357 (1432)
Q Consensus 333 ~~ES~----~l~LVAVT~~G~RLYfs~~~ 357 (1432)
.-..+ .-+.|=+.-+|.|||+|++-
T Consensus 366 ~v~g~~l~GgPqMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 366 VVKGKRLRGGPQMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp TS------S----EEE-TTSSEEEEE---
T ss_pred cccccccCCCCCeEEEccCCeEEEEEeec
Confidence 11111 34899999999999999753
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.00 E-value=5.7e+02 Score=34.64 Aligned_cols=63 Identities=19% Similarity=0.504 Sum_probs=42.0
Q ss_pred CCCcEEEeecCC---CEEEEEEecCCccc-cccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcC
Q 000546 197 DKGRILLAGRDG---NIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTE 272 (1432)
Q Consensus 197 ~~GRIF~gG~DG---~lYEl~Yq~~~gWf-~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~ 272 (1432)
++=-+|..|.|. -+|+ |+...-|- .-|| +|.+..+|+ .+++..+++-+-+|
T Consensus 216 pTlpliVSG~DDRqVKlWr--mnetKaWEvDtcr--gH~nnVssv---------------------lfhp~q~lIlSnsE 270 (1202)
T KOG0292|consen 216 PTLPLIVSGADDRQVKLWR--MNETKAWEVDTCR--GHYNNVSSV---------------------LFHPHQDLILSNSE 270 (1202)
T ss_pred CCcceEEecCCcceeeEEE--eccccceeehhhh--cccCCcceE---------------------EecCccceeEecCC
Confidence 334678888754 3444 44555676 6665 466665554 23456677888899
Q ss_pred CCeEEEEEeCCC
Q 000546 273 EMKLQVFVLGPN 284 (1432)
Q Consensus 273 ~s~I~vy~Lg~~ 284 (1432)
+.+|+|||+.+.
T Consensus 271 DksirVwDm~kR 282 (1202)
T KOG0292|consen 271 DKSIRVWDMTKR 282 (1202)
T ss_pred CccEEEEecccc
Confidence 999999999753
No 73
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.74 E-value=5.3e+02 Score=33.53 Aligned_cols=138 Identities=12% Similarity=0.325 Sum_probs=86.3
Q ss_pred eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeC
Q 000546 99 DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178 (1432)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~ 178 (1432)
..++-+|||++..-+ -.|+ |.=+.-|...|+..-+++++=+-...|-++- |+. ...++.
T Consensus 34 nG~V~IWnyetqtmV-ksfe--------V~~~PvRa~kfiaRknWiv~GsDD~~IrVfn--ynt-------~ekV~~--- 92 (794)
T KOG0276|consen 34 NGDVQIWNYETQTMV-KSFE--------VSEVPVRAAKFIARKNWIVTGSDDMQIRVFN--YNT-------GEKVKT--- 92 (794)
T ss_pred cCeeEEEecccceee-eeee--------ecccchhhheeeeccceEEEecCCceEEEEe--ccc-------ceeeEE---
Confidence 467899999864322 3343 3345567888888888888877777777765 321 012222
Q ss_pred CCeEeecCCeeEEEEEecCCCcEEEeecCCCEEEE-EEecCCccccccceeeeccCccccccccccCcccccCCCCceEE
Q 000546 179 PEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYEL-LYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVE 257 (1432)
Q Consensus 179 ~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~lYEl-~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivq 257 (1432)
|....| ++.||+.+++-=-|+.++|..+..+ .| +.+|- |..+ |- +...-+-|
T Consensus 93 --FeAH~D--yIR~iavHPt~P~vLtsSDDm~iKlW~w--e~~wa--~~qt------------------fe-GH~HyVMq 145 (794)
T KOG0276|consen 93 --FEAHSD--YIRSIAVHPTLPYVLTSSDDMTIKLWDW--ENEWA--CEQT------------------FE-GHEHYVMQ 145 (794)
T ss_pred --eecccc--ceeeeeecCCCCeEEecCCccEEEEeec--cCcee--eeeE------------------Ec-CcceEEEE
Confidence 555555 8999999999999999997754444 22 34562 2211 10 22334556
Q ss_pred EEEeCCC-ceEEEEcCCCeEEEEEeCCC
Q 000546 258 LVFDNER-QLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 258 i~vD~sR-~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
+++.+.- |-.-+=|-++||.||.+|..
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCC
Confidence 6665443 34445566789999999864
No 74
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.67 E-value=1.1e+02 Score=30.88 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhhhcHHHHHHHHHHHhcc
Q 000546 1111 YFDLLARYYVLKRQHLLAAHVLLRLAER 1138 (1432)
Q Consensus 1111 ~~DLLWryy~k~~~~~~AA~VL~~LA~~ 1138 (1432)
.+.-|.-+|..+|.|.+|-+.|.+|++.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcc
Confidence 4677888999999999999999999993
No 75
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=31.17 E-value=1.2e+02 Score=34.89 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=43.9
Q ss_pred cCCCcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCe
Q 000546 196 TDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMK 275 (1432)
Q Consensus 196 T~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~ 275 (1432)
+.+-++++|..+| ||-..++...+|. .. ....+|.||.+=++-++|-.|+. +.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~-------------~i------------~~~~~I~ql~vl~~~~~llvLsd-~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT-------------RI------------LKLSSITQLSVLPELNLLLVLSD-GQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce-------------eE------------eecceEEEEEEecccCEEEEEcC-Cc
Confidence 3567888887788 7766654333331 11 11222999999999999999998 89
Q ss_pred EEEEEeCC
Q 000546 276 LQVFVLGP 283 (1432)
Q Consensus 276 I~vy~Lg~ 283 (1432)
+.+|+|..
T Consensus 58 l~~~~L~~ 65 (275)
T PF00780_consen 58 LYVYDLDS 65 (275)
T ss_pred cEEEEchh
Confidence 99999963
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=30.90 E-value=1.6e+02 Score=40.02 Aligned_cols=105 Identities=18% Similarity=0.303 Sum_probs=69.8
Q ss_pred CCCeEeecCCeeEEEEEecCCCcEEEeecCCC---EEEEEEecCC--------------ccccccceeeeccCcc-----
Q 000546 178 LPEYTVPSDGVTMTCITCTDKGRILLAGRDGN---IYELLYTTGS--------------GWYKRCRKVCHTAGVG----- 235 (1432)
Q Consensus 178 ~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~---lYEl~Yq~~~--------------gWf~rC~Kinht~g~~----- 235 (1432)
..+.+...+--.|+||-=+.||+=|..|.|-. |||-.- ... .|..+|...+|+.-+.
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~-~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAE-IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecc-cCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 33456666667899999999999999998554 477663 122 3544667778874321
Q ss_pred ---ccccc-cccCcc--c---cc-------CCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 236 ---NVISR-WIVPNV--F---RF-------GAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 236 ---S~~~~-~llPs~--~---~~-------~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+++.+ .+--++ | +| +..-.|+-+.+|+.-+++-+.+.+.+|.||+...
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc
Confidence 22110 001111 1 11 2346688999999999999999999999999764
No 77
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=30.76 E-value=5.3e+02 Score=35.12 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=78.1
Q ss_pred CeeEEEEEecCCCcEEEeecCCCEEEEEEec--CCccccccceeeeccCccccccccccCcccccCCCCceEEEEE---e
Q 000546 187 GVTMTCITCTDKGRILLAGRDGNIYELLYTT--GSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVF---D 261 (1432)
Q Consensus 187 g~~v~~I~gT~~GRIF~gG~DG~lYEl~Yq~--~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~v---D 261 (1432)
...+..+.|+...+|++...+|.+|-+.=.. +.+| -++|. . +..++.+...+.|+.+.. -
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r--------~~~G~--~-----i~~ll~L~~~E~Iv~~i~~~~~ 599 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASR--------TAKGK--P-----IVNLLPLQPDERITAILSVKEF 599 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCc--------CCCCc--C-----HHHhccCCCCCeEEEEEEeccC
Confidence 3556667777889999999999999883110 1123 12231 1 222334567888998775 2
Q ss_pred CCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcEEEEEecCccCccceEE
Q 000546 262 NERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHL 341 (1432)
Q Consensus 262 ~sR~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvsI~pIs~~ES~~l~L 341 (1432)
+....|+.+|++|-|.--.+..-... ++ .|- .+......=.++++.++... =++
T Consensus 600 ~~~~~lvliT~~GyiKRi~l~~~~~~--~r--------------~G~------~aiklke~D~lv~v~~~~~~----d~l 653 (800)
T TIGR01063 600 DDGLYLFFATKNGVVKKTSLTEFSNI--RS--------------NGI------IAIKLDDGDELISVRLTSGD----DEV 653 (800)
T ss_pred CCCCEEEEEeCCCEEEEEEhHHhhhh--cc--------------CCc------ccccCCCCCEEEEEEEeCCC----CEE
Confidence 34568999999988877776421100 00 000 00111223467888877543 259
Q ss_pred EEEecCceEEEEecC
Q 000546 342 VAVLSDGRRMYLSTS 356 (1432)
Q Consensus 342 VAVT~~G~RLYfs~~ 356 (1432)
+.+|++|.=+.|...
T Consensus 654 ll~Ts~Gr~~r~~v~ 668 (800)
T TIGR01063 654 MLGSKNGKAVRFPEE 668 (800)
T ss_pred EEEECCCcEEEEEhh
Confidence 999999988888764
No 78
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=30.68 E-value=4.6e+02 Score=34.29 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=74.1
Q ss_pred eeccCCCcccc-cceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecC
Q 000546 129 LAKSKPGIFVE-AIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRD 207 (1432)
Q Consensus 129 LVkPKpGVF~~-~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~D 207 (1432)
-+.+---+++. +=+|+-|+.|--.|+++-+.-- +.+... --++++ ++...+.....+|+-.+-.|
T Consensus 474 ~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~----------~~~~l~---~rln~~-vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 474 KCPSISRLVVSSDGNYIAAISTRGQIFVYNLETL----------ESHLLK---VRLNID-VTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred CCCcceeEEEcCCCCEEEEEeccceEEEEEcccc----------eeecch---hccCcc-eeeeeccccccCcEEEEecC
Confidence 33344445554 3478888888888888876321 222221 112222 23333333457999999999
Q ss_pred CCEEEEEEecCC--ccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 208 GNIYELLYTTGS--GWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 208 G~lYEl~Yq~~~--gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
+.+||..-+++. .|+ |-|- . . +|..++ .-.++|.-|.+|+.+....-+.....+-+.|.+
T Consensus 540 nQv~efdi~~~~l~~ws----~~nt-~----n-----lpk~~~-~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 540 NQVFEFDIEARNLTRWS----KNNT-R----N-----LPKEPK-TLIPGIPGISFDPKNSSRFIVYDAHWSCLIDFS 601 (691)
T ss_pred CeEEEEecchhhhhhhh----hccc-c----c-----cccChh-hcCCCCceEEeCCCCccEEEEEcCcEEEEEecC
Confidence 999999985543 353 1121 1 1 555432 346778888888887766666666666666654
No 79
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=30.62 E-value=7.8e+02 Score=30.12 Aligned_cols=171 Identities=18% Similarity=0.181 Sum_probs=87.6
Q ss_pred EEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEe
Q 000546 97 SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1432)
Q Consensus 97 tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~ 176 (1432)
+-|..++||+..+. .++.-|.|.....++ |=|.++=|.++..-+.-.|++--..-. .+-..-...+ ++
T Consensus 167 ~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~--------G~f~pdGKr~~tgy~dgti~~Wn~ktg-~p~~~~~~~e-~~- 234 (399)
T KOG0296|consen 167 STDGSVWMWQIPSQ-ALCKVMSGHNSPCTC--------GEFIPDGKRILTGYDDGTIIVWNPKTG-QPLHKITQAE-GL- 234 (399)
T ss_pred cCCCcEEEEECCCc-ceeeEecCCCCCccc--------ccccCCCceEEEEecCceEEEEecCCC-ceeEEecccc-cC-
Confidence 35899999999764 334567775554443 667777788888888777766543211 0000000001 11
Q ss_pred eCCCeEeecCCeeEEEEEecCCCcEEEeec-CC--------CEEEEEEecCCcc----c-cccceeeecc-C-ccccccc
Q 000546 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--------NIYELLYTTGSGW----Y-KRCRKVCHTA-G-VGNVISR 240 (1432)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG--------~lYEl~Yq~~~gW----f-~rC~Kinht~-g-~~S~~~~ 240 (1432)
+.|.+++..+|- +.+.|..+|-..+.+. .| +.-++.=+.+++= | .-|.++-+-. | +-.-|+.
T Consensus 235 ~~~~~~~~~~~~--~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~i 312 (399)
T KOG0296|consen 235 ELPCISLNLAGS--TLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAI 312 (399)
T ss_pred cCCccccccccc--eeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEE
Confidence 123344444332 2333444444444332 33 2333333333321 1 2244432221 1 1111110
Q ss_pred cccCc-cc--ccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 241 WIVPN-VF--RFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 241 ~llPs-~~--~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
|=+-. -+ .+..+++|+++..++ .+.|||=+.+|+|+.||--
T Consensus 313 yD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 313 YDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred EecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecc
Confidence 10000 01 224678999999999 8999999999999999974
No 80
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.28 E-value=1.7e+02 Score=38.92 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=46.8
Q ss_pred EEEEecCCCcEEEeecCCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEEE
Q 000546 191 TCITCTDKGRILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYAR 270 (1432)
Q Consensus 191 ~~I~gT~~GRIF~gG~DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtL 270 (1432)
.+++++.+|+|.+|..||.|+-|.=+- .+ +-.|-+. +.+-+.++-+++.|++|.++
T Consensus 28 isc~~s~~~~vvigt~~G~V~~Ln~s~---------------~~--------~~~fqa~-~~siv~~L~~~~~~~~L~sv 83 (933)
T KOG2114|consen 28 ISCCSSSTGSVVIGTADGRVVILNSSF---------------QL--------IRGFQAY-EQSIVQFLYILNKQNFLFSV 83 (933)
T ss_pred eeEEcCCCceEEEeeccccEEEecccc---------------ee--------eehheec-chhhhhHhhcccCceEEEEE
Confidence 345567899999999999988766211 00 0111111 22235678889999999998
Q ss_pred cCCC-----eEEEEEeCCC
Q 000546 271 TEEM-----KLQVFVLGPN 284 (1432)
Q Consensus 271 s~~s-----~I~vy~Lg~~ 284 (1432)
.++. .++||++.+-
T Consensus 84 ~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred eecCCCCceEEEEeccccc
Confidence 8754 5999999753
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.07 E-value=6e+02 Score=32.01 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=43.6
Q ss_pred CCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCC
Q 000546 119 GEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDK 198 (1432)
Q Consensus 119 ~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~ 198 (1432)
.+.++|.++..-+-+|-= ++|+..+-+-|++-.--. .-+.+.-+. | ++.++.--.|
T Consensus 24 ke~~~vssl~fsp~~P~d--------~aVt~S~rvqly~~~~~~------~~k~~srFk--------~--~v~s~~fR~D 79 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYD--------FAVTSSVRVQLYSSVTRS------VRKTFSRFK--------D--VVYSVDFRSD 79 (487)
T ss_pred cccCcceeEecCCCCCCc--------eEEecccEEEEEecchhh------hhhhHHhhc--------c--ceeEEEeecC
Confidence 456788888876666644 356666666666532110 001111111 2 3455555679
Q ss_pred CcEEEeec-CCCEEEEEEec
Q 000546 199 GRILLAGR-DGNIYELLYTT 217 (1432)
Q Consensus 199 GRIF~gG~-DG~lYEl~Yq~ 217 (1432)
||.+.+|. .|.|-=+.|..
T Consensus 80 G~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred CeEEEccCCcCcEEEecccc
Confidence 99999998 88777666654
No 82
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=28.99 E-value=4.2e+02 Score=34.40 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=88.8
Q ss_pred eEEEEeCeEEEEecCCCCCCC-----ccccCCCcceEEEEeeccCCC--ccccc----ceE--EEEEeecceEEEEEeee
Q 000546 94 AWASVDNSLFLWRFDKWDGQC-----PEYTGEEQVICAVGLAKSKPG--IFVEA----IQY--LLILATPVELILVGVCC 160 (1432)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~-----~~fd~~~~~I~aV~LVkPKpG--VF~~~----I~~--lLvvaT~~eI~Llgvs~ 160 (1432)
|=-+.+..+++||-..+.+.. .--..-++.+++|-=++=+.+ +|.-. |.. +=.+..|+++.++....
T Consensus 259 ~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~ 338 (555)
T KOG1587|consen 259 AGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK 338 (555)
T ss_pred EeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc
Confidence 334567999999998765521 111233455555555554433 22211 211 11234455555554433
Q ss_pred cCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecCC--CEEEEEEecCCccc---------------c
Q 000546 161 SGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDG--NIYELLYTTGSGWY---------------K 223 (1432)
Q Consensus 161 ~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG--~lYEl~Yq~~~gWf---------------~ 223 (1432)
....+. ..... .+.|+-+. +....-|+||+.|-||-|.+-| .=+|..|..-.+.- .
T Consensus 339 ~~~~~~-----~~~~~-~t~~~F~~-~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~ 411 (555)
T KOG1587|consen 339 HKGQQS-----SKAVG-ATSLKFEP-TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP 411 (555)
T ss_pred cccccc-----ccccc-eeeEeecc-CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence 211111 11111 11133332 2345689999999999987643 22223333322221 0
Q ss_pred c--------cceeeeccCccccccccccCcccccCCCCceEEEEEeCCCceEEE-EcCCCeEEEEEeCCCCCCC
Q 000546 224 R--------CRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYA-RTEEMKLQVFVLGPNGDGP 288 (1432)
Q Consensus 224 r--------C~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYt-Ls~~s~I~vy~Lg~~g~~~ 288 (1432)
+ +-||.+... . .-|.+......+.+-.++==++|-.++. -..+|+|.+|||-.+-.++
T Consensus 412 k~fls~gDW~vriWs~~~--~-----~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDV--I-----ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceeeeeccceeEeccccC--C-----CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 0 111111110 0 1233323345666878888888965555 5559999999997665444
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=28.72 E-value=2.2e+02 Score=36.01 Aligned_cols=100 Identities=17% Similarity=0.284 Sum_probs=57.3
Q ss_pred EeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCc---ccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeE
Q 000546 98 VDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGI---FVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGV---F~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~ 174 (1432)
-|+.|-|||..+...-... ..||-.|+|+. |-++=+ ++|-|-+..++.. ...|.
T Consensus 384 ~D~tLKvWDLrq~kkpL~~---------~tgL~t~~~~tdc~FSPd~k----------li~TGtS~~~~~~----~g~L~ 440 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNV---------RTGLPTPFPGTDCCFSPDDK----------LILTGTSAPNGMT----AGTLF 440 (641)
T ss_pred CCCceeeeeccccccchhh---------hcCCCccCCCCccccCCCce----------EEEecccccCCCC----CceEE
Confidence 5799999999764321122 33455566653 444333 3333433322111 12344
Q ss_pred EeeCC----CeEeecCCeeEEEEEecC-CCcEEEeecCCCEEEEEEecCCcc
Q 000546 175 LQPLP----EYTVPSDGVTMTCITCTD-KGRILLAGRDGNIYELLYTTGSGW 221 (1432)
Q Consensus 175 L~~~~----~~sv~tdg~~v~~I~gT~-~GRIF~gG~DG~lYEl~Yq~~~gW 221 (1432)
+|... .+.|+.++..|..+.=++ -..||.|..||.+| +.|....+-
T Consensus 441 f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~-vyYdp~~S~ 491 (641)
T KOG0772|consen 441 FFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAH-VYYDPNESI 491 (641)
T ss_pred EEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceE-EEECccccc
Confidence 43211 367787877777777777 49999999999776 456554443
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=28.44 E-value=1e+03 Score=28.68 Aligned_cols=208 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred eCeEEEEecCCCCC--CCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEe
Q 000546 99 DNSLFLWRFDKWDG--QCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1432)
Q Consensus 99 Dn~L~LW~Y~~~~~--~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~ 176 (1432)
||.+-|+||.++.- -+.+|.+ -+.+.++. |-+.=.+|||=+-.-.+.|+-| +.-+-|
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd-~~~vrsiS--------fHPsGefllvgTdHp~~rlYdv------------~T~Qcf 251 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQD-TEPVRSIS--------FHPSGEFLLVGTDHPTLRLYDV------------NTYQCF 251 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhc-cceeeeEe--------ecCCCceEEEecCCCceeEEec------------cceeEe
Q ss_pred eCCCeEeecCC--eeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCC
Q 000546 177 PLPEYTVPSDG--VTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVD 253 (1432)
Q Consensus 177 ~~~~~sv~tdg--~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d 253 (1432)
.+ +.|-|+ -.|+++.-+++|++|..|+ ||+|--.+ |.+.- -|-+|-..-...
T Consensus 252 -vs--anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD------------------GVS~r----Cv~t~~~AH~gs 306 (430)
T KOG0640|consen 252 -VS--ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD------------------GVSNR----CVRTIGNAHGGS 306 (430)
T ss_pred -ee--cCcccccccceeEEEecCCccEEEEeccCCcEEeec------------------cccHH----HHHHHHhhcCCc
Q ss_pred ceEEEEEeCCCceEEEEcCCCeEEEEEeCCCCCCCcceeeeecccccccccccCCccccccc-CCCCCCCCcEEEEEecC
Q 000546 254 PIVELVFDNERQLLYARTEEMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQR-APHRSTKPSVVSISPLS 332 (1432)
Q Consensus 254 ~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~IvsI~pIs 332 (1432)
.|...++-...+++-+=..+|++..|.|+.. +.+.+....=...........+|..+ -....+.-.-.+++.-.
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-----R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWd 381 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTG-----RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWD 381 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCC-----ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecc
Q ss_pred ccCccceEEEEEecCceEEEEecCC
Q 000546 333 TLESKWLHLVAVLSDGRRMYLSTSA 357 (1432)
Q Consensus 333 ~~ES~~l~LVAVT~~G~RLYfs~~~ 357 (1432)
+--+.++.|.+.-+||.==|+..++
T Consensus 382 aRtadr~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 382 ARTADRVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred ccchhhhhhcccCCCCCceEEEeCC
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=28.43 E-value=2.6e+02 Score=33.21 Aligned_cols=18 Identities=33% Similarity=0.820 Sum_probs=14.4
Q ss_pred cCCCcEEEeec-CC--CEEEE
Q 000546 196 TDKGRILLAGR-DG--NIYEL 213 (1432)
Q Consensus 196 T~~GRIF~gG~-DG--~lYEl 213 (1432)
|++|.-+|+|. || ++|-+
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEc
Confidence 68999999998 78 55555
No 86
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.43 E-value=4.7e+02 Score=31.36 Aligned_cols=132 Identities=16% Similarity=0.267 Sum_probs=79.9
Q ss_pred EEeecceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CC--CEEEEEEecCCccc
Q 000546 146 ILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWY 222 (1432)
Q Consensus 146 vvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq~~~gWf 222 (1432)
+|+-+.|=+|+|+.....+.+.+.....+|.|+ |+-+.+--.+++++. +||--..|. |. .||.+.=..+-|=.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~l--F~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPL--FAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeecc--ccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce
Confidence 466677888999999887755444466778864 777777666777754 355444454 65 67777655444432
Q ss_pred -cccceee-ecc-Cccc--c---------ccccccCcc-----cccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 223 -KRCRKVC-HTA-GVGN--V---------ISRWIVPNV-----FRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 223 -~rC~Kin-ht~-g~~S--~---------~~~~llPs~-----~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
.--.-|| +.. ...| . |.-|=+-++ ++ .....|..|.|-+|-++--++..+.+++.|+|=
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK-AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec-ccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 1111111 000 0000 0 111111111 11 234559999999999999999999999999994
No 87
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=28.23 E-value=5.2e+02 Score=30.73 Aligned_cols=135 Identities=16% Similarity=0.283 Sum_probs=82.4
Q ss_pred eCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeC
Q 000546 99 DNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPL 178 (1432)
Q Consensus 99 Dn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~ 178 (1432)
|.+.-|||.+.+--. ..|.|-.--|.++.|.+--++.|+.. - +++..--=|.......+.
T Consensus 165 D~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFvSg-----------------~-cD~~aklWD~R~~~c~qt- 224 (343)
T KOG0286|consen 165 DMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFVSG-----------------G-CDKSAKLWDVRSGQCVQT- 224 (343)
T ss_pred CceEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEEec-----------------c-cccceeeeeccCcceeEe-
Confidence 556679999976543 67888888899998876688888531 1 111000000011222221
Q ss_pred CCeEeecCCeeEEEEEecCCCcEEEeec-CC--CEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCce
Q 000546 179 PEYTVPSDGVTMTCITCTDKGRILLAGR-DG--NIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPI 255 (1432)
Q Consensus 179 ~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG--~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~I 255 (1432)
| +.+-..|+.|.-.++|-=|..|. || .+|.|-=- |.....+. -...-+|
T Consensus 225 --F--~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD--------~~~a~ys~----------------~~~~~gi 276 (343)
T KOG0286|consen 225 --F--EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD--------QELAVYSH----------------DSIICGI 276 (343)
T ss_pred --e--cccccccceEEEccCCCeeeecCCCceeEEEeecCC--------cEEeeecc----------------CcccCCc
Confidence 2 23346789999999999999998 55 67766521 11111110 0122345
Q ss_pred EEEEEeCCCceEEEEcCCCeEEEEEe
Q 000546 256 VELVFDNERQLLYARTEEMKLQVFVL 281 (1432)
Q Consensus 256 vqi~vD~sR~iLYtLs~~s~I~vy~L 281 (1432)
..+.+--|-.+||.=-.+.++.|||-
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeec
Confidence 55555568889999888899999996
No 88
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=27.97 E-value=7.5e+02 Score=33.29 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.0
Q ss_pred CCCCcEEEEEecCccCccceEEEEEecCceEEEE
Q 000546 320 STKPSVVSISPLSTLESKWLHLVAVLSDGRRMYL 353 (1432)
Q Consensus 320 ~~~~~IvsI~pIs~~ES~~l~LVAVT~~G~RLYf 353 (1432)
.+..+|+....=.+-|..+.+.+++-.+=.+.|-
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 4567899998888889999998888777666663
No 89
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=27.17 E-value=1.3e+03 Score=29.12 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=30.3
Q ss_pred CCCcceEEEEeeccCCCcccccc-eEEEEEeecceEEEEEeeecCCC
Q 000546 119 GEEQVICAVGLAKSKPGIFVEAI-QYLLILATPVELILVGVCCSGAG 164 (1432)
Q Consensus 119 ~~~~~I~aV~LVkPKpGVF~~~I-~~lLvvaT~~eI~Llgvs~~~~~ 164 (1432)
++++.|+.|.. |-|+..- ...|+|=.|..+.++.|...++.
T Consensus 69 ~l~~PILqv~~-----G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 69 QLKDPILQVEC-----GKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred ecCCcEEEEEe-----ccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 35677777776 7776643 34788899999999999776543
No 90
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=26.38 E-value=1.2e+03 Score=30.70 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=99.0
Q ss_pred ccccccccceeEEEEeCeEEEEecCCCCCCC----ccccCCCcceEEEEeeccCCCccccc-c---eEEEEEeecceEEE
Q 000546 84 LCGIFPEIRRAWASVDNSLFLWRFDKWDGQC----PEYTGEEQVICAVGLAKSKPGIFVEA-I---QYLLILATPVELIL 155 (1432)
Q Consensus 84 ~mGlFpEI~rAW~tIDn~L~LW~Y~~~~~~~----~~fd~~~~~I~aV~LVkPKpGVF~~~-I---~~lLvvaT~~eI~L 155 (1432)
+--.||-=.|+=++.-++|++--|.++.+.. ..-.|.-+.+.=.+|.-|++..|... | -.++++.|+.+..|
T Consensus 328 ~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~i 407 (691)
T KOG2048|consen 328 QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKI 407 (691)
T ss_pred ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEE
Confidence 4456777777777777777754444322110 00011112333334444444433331 2 24789999999999
Q ss_pred EEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEec-CCCcEEEeec-CCCEEEEEEecCCccccccceeeeccC
Q 000546 156 VGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCT-DKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAG 233 (1432)
Q Consensus 156 lgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT-~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g 233 (1432)
+-+.+++ .+.+.... .+|+-....+.|.-| ++.-+|+... ++.|.+++-.. ... + +
T Consensus 408 y~L~~~~---------~vk~~~v~--~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~-ps~-k------e--- 465 (691)
T KOG2048|consen 408 YRLQPDP---------NVKVINVD--DVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET-PSF-K------E--- 465 (691)
T ss_pred EEeccCc---------ceeEEEec--cchhhhccceeeEEEecCceEEEEecccceeEEEEecC-cch-h------h---
Confidence 9998864 12222222 223333456667667 4678888885 55665555221 111 0 1
Q ss_pred ccccccccccCcccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCC
Q 000546 234 VGNVISRWIVPNVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 234 ~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
+.++ -|. ...++|..|++-+--+.+-+++..|.|-||+|..
T Consensus 466 l~~~-----~~~----~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 466 LKSI-----QSQ----AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred hhcc-----ccc----cCCCcceeEEEcCCCCEEEEEeccceEEEEEccc
Confidence 1111 221 4678899999999999999999999999999963
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=26.10 E-value=4.4e+02 Score=35.96 Aligned_cols=225 Identities=16% Similarity=0.145 Sum_probs=127.2
Q ss_pred ccccccCc-chhHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHhhCCCCCCccchh---hhhHHHHHHHhhcC-CChHHH
Q 000546 840 FCQLVCSE-EGDRLATRLISALMEYYTDPDGRGTVDDISGRLREGCPSYFKESDYK---FFLAVECLERAAVT-SDSEEK 914 (1432)
Q Consensus 840 F~dLv~~~-~G~~l~~~Li~aLIn~~i~~~g~~svd~Is~~Lr~~Cpsf~s~dD~~---~~KA~E~L~~Ak~~-~~~~~r 914 (1432)
|+.++... +..++..+++.+|.+. .+-..+..|...=|.+|+.+|.. ..+|.+.++.|... ++..+|
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~--------~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRN--------RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc--------CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 44444432 2367888888888653 24466789999999999999965 56777777777544 334566
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHhCcchHHHHHHHHHHHHhcCCCCCccccCcchhhHHHHHHHHHHHHHHHHHH
Q 000546 915 ENLAREAFNFLSKVPESADLRTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSA 994 (1432)
Q Consensus 915 ~~~L~eAl~Lf~kv~~~~~L~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~~~~~~~~r~~~~~~R~~cY~~I~~~ 994 (1432)
-..+..||..+.+.-.. -..+|...+.--+ --.+|-.+..+|.+ |+.|.+.
T Consensus 264 ~~~~d~ala~~~~l~~~---------------------------~~~~p~~~~~~~~-~~~Drl~aL~~r~r-~~~vi~~ 314 (822)
T PRK14574 264 FDIADKALADYQNLLTR---------------------------WGKDPEAQADYQR-ARIDRLGALLVRHQ-TADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHhh---------------------------ccCCCccchHHHH-HHHHHHHHHHHhhh-HHHHHHH
Confidence 67777777776553211 0112221110000 01133344555555 7777777
Q ss_pred HHhhhcCCCcCCCCCCCCCCC-----C---CCCCCHHHHHHHHHHHHHHHhcCC-------ChhH-HHHHHHHHHhcCCc
Q 000546 995 LRSLKGDSSQREFGSPVRPAG-----P---RSALDPASRKKYICQIVQLGVQSP-------DRIF-HEYLYRTMIDLGLE 1058 (1432)
Q Consensus 995 L~~l~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~i~~~al~S~-------DelF-H~~LYdWLi~~~l~ 1058 (1432)
.+.|...... .|+- . ...-.|..+ ..+|+.+++++ |++. +..||--+++.+.-
T Consensus 315 y~~l~~~~~~-------~P~y~~~a~adayl~~~~P~kA----~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 315 YEAMEAEGYK-------MPDYARRWAASAYIDRRLPEKA----APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HHHhhhcCCC-------CCHHHHHHHHHHHHhcCCcHHH----HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 7766532110 0000 0 001122222 23566666544 3333 67888888888764
Q ss_pred c-------ccccccCCC-hHHHHhhcCCCchhhhhhcccccccccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHHHHH
Q 000546 1059 N-------ELLEYGGPD-LVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAH 1130 (1432)
Q Consensus 1059 d-------~LLei~sP~-Le~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~ 1130 (1432)
+ ++.+ .+|+ +..| |.++..-++|=.+..-|+-++|...|++.+|=+
T Consensus 384 ~~A~~~l~~~~~-~~p~~~~~~-------------------------~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 384 DKAYQFAVNYSE-QTPYQVGVY-------------------------GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred HHHHHHHHHHHh-cCCcEEecc-------------------------CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4 3333 2442 1111 111222245556677789999999999999999
Q ss_pred HHHHHhcc
Q 000546 1131 VLLRLAER 1138 (1432)
Q Consensus 1131 VL~~LA~~ 1138 (1432)
.|.+|+..
T Consensus 438 ~le~l~~~ 445 (822)
T PRK14574 438 KLEDLSST 445 (822)
T ss_pred HHHHHHHh
Confidence 99999874
No 92
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.75 E-value=2.5e+02 Score=35.58 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=54.3
Q ss_pred eeEEEEEecCCCc-EEEeecCC-CEEEEEE-ecCCccc--cccceeeeccCccccccccccCcc-c-ccC-CCCceEEEE
Q 000546 188 VTMTCITCTDKGR-ILLAGRDG-NIYELLY-TTGSGWY--KRCRKVCHTAGVGNVISRWIVPNV-F-RFG-AVDPIVELV 259 (1432)
Q Consensus 188 ~~v~~I~gT~~GR-IF~gG~DG-~lYEl~Y-q~~~gWf--~rC~Kinht~g~~S~~~~~llPs~-~-~~~-~~d~Ivqi~ 259 (1432)
..|..|-.+++|- +-+.|.|| ||-||-- -..+|.| +|-.-+|.|.++.+-|... -|++ + ..+ .++.|.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~~ltl~Qa~WHP~S~~--- 179 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-STSLTLKQAAWHPSSIL--- 179 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CCceeeeeccccCCccC---
Confidence 4566777777665 55888899 8988832 2344566 7777889998776653221 1222 0 000 122221
Q ss_pred EeCCCceEEEEcCCCeEEEEEeCCC
Q 000546 260 FDNERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 260 vD~sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
| .-|-.|+.+++||+|++..+
T Consensus 180 -D---~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 180 -D---PHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred -C---ceEEEEecCcEEEEEecCCc
Confidence 2 24667888999999999754
No 93
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=25.22 E-value=6.4e+02 Score=29.83 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=58.4
Q ss_pred cceeEEEEeCeEEEEecCCCCCC-C-ccccCCCcceEEEEeeccCCCcccccceEEEEEeec-ceEEEEEeeecCCCCCC
Q 000546 91 IRRAWASVDNSLFLWRFDKWDGQ-C-PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATP-VELILVGVCCSGAGDGT 167 (1432)
Q Consensus 91 I~rAW~tIDn~L~LW~Y~~~~~~-~-~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~-~eI~Llgvs~~~~~~~~ 167 (1432)
=++.=++++++|++|++...... . +.++ .+-.|+++... +..++|++- ..|.++...-. .
T Consensus 98 ~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~-----------~~~I~vgD~~~sv~~~~~~~~--~--- 160 (321)
T PF03178_consen 98 NGRLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF-----------KNYILVGDAMKSVSLLRYDEE--N--- 160 (321)
T ss_dssp TTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE-----------TTEEEEEESSSSEEEEEEETT--T---
T ss_pred CCEEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEecc-----------ccEEEEEEcccCEEEEEEEcc--C---
Confidence 56788999999999999865411 0 2222 22255555554 224555554 34666654321 1
Q ss_pred CCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecC
Q 000546 168 DPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTG 218 (1432)
Q Consensus 168 ~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~ 218 (1432)
..+.+. +-......++++..-.+++.|+++. +|||+=+.|..+
T Consensus 161 ---~~l~~v-----a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 161 ---NKLILV-----ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE 204 (321)
T ss_dssp ---E-EEEE-----EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred ---CEEEEE-----EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence 234444 3333455677776554445677765 999999999753
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=24.93 E-value=9.1e+02 Score=28.27 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=44.7
Q ss_pred eEeecCCeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEE
Q 000546 181 YTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELV 259 (1432)
Q Consensus 181 ~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~ 259 (1432)
|.+|.. |++--=.++--+|.+|. |+-+|.++|+..+.-= +|.+| ...||--+.
T Consensus 221 ~k~P~n---V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~------~~nkg-----------------h~gpVhcVr 274 (334)
T KOG0278|consen 221 YKMPCN---VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG------SYNKG-----------------HFGPVHCVR 274 (334)
T ss_pred ccCccc---cccccccCCCceEEecCcceEEEEEeccCCceee------ecccC-----------------CCCceEEEE
Confidence 444543 33332356668887765 9999999999766431 12111 112222222
Q ss_pred EeCCCceEEE-EcCCCeEEEEEeCCC
Q 000546 260 FDNERQLLYA-RTEEMKLQVFVLGPN 284 (1432)
Q Consensus 260 vD~sR~iLYt-Ls~~s~I~vy~Lg~~ 284 (1432)
+- .-+-+|+ =|++|+|++|..++.
T Consensus 275 FS-PdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 275 FS-PDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EC-CCCceeeccCCCceEEEEEecCC
Confidence 22 2245666 588999999999864
No 95
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=24.89 E-value=1.7e+02 Score=34.13 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=42.4
Q ss_pred CcceEEEEeeccCCCcccccceEEEEEeecce-EEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEec-C-
Q 000546 121 EQVICAVGLAKSKPGIFVEAIQYLLILATPVE-LILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCT-D- 197 (1432)
Q Consensus 121 ~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~e-I~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT-~- 197 (1432)
..+|++++-.| ...=-++---+|||+|..- |+||- + ...++.. .+.+|.--+ +-+..|+ +
T Consensus 176 ~t~ITcm~tik--k~~~d~~a~scLViGTE~~~i~iLd------~------~af~il~--~~~lpsvPv-~i~~~G~~de 238 (257)
T PF14779_consen 176 QTVITCMATIK--KSSADEDAVSCLVIGTESGEIYILD------P------QAFTILK--QVQLPSVPV-FISVSGQYDE 238 (257)
T ss_pred CceeEEeeeec--ccccCCCCcceEEEEecCCeEEEEC------c------hhheeEE--EEecCCCce-EEEEEeeeec
Confidence 45777777653 2233333455788998875 44442 1 1122221 133332212 3334453 3
Q ss_pred -CCcEEEeecCCCEEEE
Q 000546 198 -KGRILLAGRDGNIYEL 213 (1432)
Q Consensus 198 -~GRIF~gG~DG~lYEl 213 (1432)
+.|||.+++||+||=|
T Consensus 239 vdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 239 VDYRIVVACRDGKIYTI 255 (257)
T ss_pred cceEEEEEeCCCEEEEE
Confidence 7999999999999976
No 96
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.56 E-value=2.3e+03 Score=30.37 Aligned_cols=67 Identities=19% Similarity=0.085 Sum_probs=51.2
Q ss_pred HHHHHHhcCCccccccccCCChHHHHhhcCCCchhhhhhcccccccccccCCCCCCCCCchhhhHHHHHHHHHhhhcHHH
Q 000546 1048 LYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLL 1127 (1432)
Q Consensus 1048 LYdWLi~~~l~d~LLei~sP~Le~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~ 1127 (1432)
.-++..++|+-++.|.+-.|..|.|.+ .+.+...+...+..|.+
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~------------------------------------i~~~ya~hL~~~~~~~~ 957 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKV------------------------------------IYEAYADHLREELMSDE 957 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHH------------------------------------HHHHHHHHHHHhccccH
Confidence 346778899999999999999998853 36778888888999888
Q ss_pred HHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhhhcCC
Q 000546 1128 AAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATN 1168 (1432)
Q Consensus 1128 AA~VL~~LA~~~s~~s~~~isL~~RIeYLsrAv~~aks~~~ 1168 (1432)
||-....... +..|+.++|+.+.
T Consensus 958 Aal~Ye~~Gk------------------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 958 AALMYERCGK------------------LEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHHhcc------------------HHHHHHHHHHhcc
Confidence 8755444332 6778888777763
No 97
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=23.41 E-value=1.3e+02 Score=21.03 Aligned_cols=30 Identities=10% Similarity=0.385 Sum_probs=25.3
Q ss_pred CCCceEEEEEeCCCceEEEEcCCCeEEEEE
Q 000546 251 AVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1432)
Q Consensus 251 ~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~ 280 (1432)
..+.|..+.+.+.-+++.+-+.++.|++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456788898888778999999999999985
No 98
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=23.12 E-value=1.4e+03 Score=28.49 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=27.4
Q ss_pred CCceEEEEEeCCCceEEEEcCCCeEEEEEeCCCC
Q 000546 252 VDPIVELVFDNERQLLYARTEEMKLQVFVLGPNG 285 (1432)
Q Consensus 252 ~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~g 285 (1432)
...+.-++||+..+.||.=-|+-=|-.|+..+++
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~ 240 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEG 240 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC
T ss_pred CCcceEEEEecccCCEEEecCccEEEEEecCCCC
Confidence 4479999999999999998888777777776655
No 99
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=23.06 E-value=1.2e+03 Score=29.65 Aligned_cols=163 Identities=20% Similarity=0.246 Sum_probs=80.3
Q ss_pred EEeeccCCCcccccceEEEEEeecc-eEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCC--cEEE
Q 000546 127 VGLAKSKPGIFVEAIQYLLILATPV-ELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKG--RILL 203 (1432)
Q Consensus 127 V~LVkPKpGVF~~~I~~lLvvaT~~-eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~G--RIF~ 203 (1432)
++..+|.-..+...=.+.++|++.. ++++|-+..++ .+|.+.+.. .+ ++ .-++++.-++| .+|+
T Consensus 207 ~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~--------~~i~i~~~g--~~-~~--~~s~l~~l~~g~d~lf~ 273 (504)
T PF10433_consen 207 TSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDG--------GSISITYLG--TL-CS--IASSLTYLKNGGDYLFV 273 (504)
T ss_dssp EEEEE------SSTTSSEEEEEETTSEEEEEEEEEEE--------EEEEEEEEE--E---S---ESEEEEESTT--EEEE
T ss_pred EEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECC--------CeEEEEEcC--Cc-CC--hhheEEEEcCCCEEEEE
Confidence 3333443333333334445555555 88888887753 145555432 21 11 23567667889 9999
Q ss_pred eec--CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCC---Cc-------eEEEEc
Q 000546 204 AGR--DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNE---RQ-------LLYART 271 (1432)
Q Consensus 204 gG~--DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~s---R~-------iLYtLs 271 (1432)
||+ |+.+|.+... .+ .+ += .+..-.||+++++=+. .+ -||+.|
T Consensus 274 gs~~gds~l~~~~~~---~l--------------~~-----~~---~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~s 328 (504)
T PF10433_consen 274 GSEFGDSQLLQISLS---NL--------------EV-----LD---SLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACS 328 (504)
T ss_dssp EESSS-EEEEEEESE---SE--------------EE-----EE---EE----SEEEEEEE-TSSSSS-------EEEEEE
T ss_pred EEecCCcEEEEEeCC---Cc--------------EE-----EE---eccCcCCccceEEeccccCCCCcccccceEEEEE
Confidence 998 5566666611 00 00 00 1234557888877432 22 577776
Q ss_pred C---CCeEEEEEeCCCCCCCcceeeeecccccccccccCCcccccccCCCCCCCCcEEEEEecCccCccceEEEEEecCc
Q 000546 272 E---EMKLQVFVLGPNGDGPLKKVAEERNLFNQRDTHHGGRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSDG 348 (1432)
Q Consensus 272 ~---~s~I~vy~Lg~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvsI~pIs~~ES~~l~LVAVT~~G 348 (1432)
. +|+|++..=|-. + +++ . .. ......+..|..+....+.+-+||.-..+.
T Consensus 329 G~g~~gsL~~lr~Gi~---~-~~~-~---------~~-------------~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~ 381 (504)
T PF10433_consen 329 GAGKRGSLRILRNGIG---I-EGL-E---------LA-------------SSELPGVTGIWTLKLSSSDHSYLVLSFPNE 381 (504)
T ss_dssp SSGGG-EEEEEEESBE---E-E---E---------EE-------------EEEESTEEEEEEE-SSSSSBSEEEEEESSE
T ss_pred CcCCCCcEEEEeccCC---c-eee-e---------ee-------------ccCCCCceEEEEeeecCCCceEEEEEcCCc
Confidence 4 456666664422 1 100 0 00 001223677777766544467787777888
Q ss_pred eEEEEe
Q 000546 349 RRMYLS 354 (1432)
Q Consensus 349 ~RLYfs 354 (1432)
+|++--
T Consensus 382 T~vl~~ 387 (504)
T PF10433_consen 382 TRVLQI 387 (504)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 887765
No 100
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=22.98 E-value=1.7e+02 Score=38.49 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=56.7
Q ss_pred ccccceEEEEEeecceEEEEEeeecCCCC----CCCCCceeEEeeCC----CeEeecCC---------------------
Q 000546 137 FVEAIQYLLILATPVELILVGVCCSGAGD----GTDPYAEISLQPLP----EYTVPSDG--------------------- 187 (1432)
Q Consensus 137 F~~~I~~lLvvaT~~eI~Llgvs~~~~~~----~~~~~~el~L~~~~----~~sv~tdg--------------------- 187 (1432)
|.++=++.|.|+-|.|+.++-+.|.-.-. ....-+-+++.|+| +|++..||
T Consensus 238 f~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l 317 (1062)
T KOG1912|consen 238 FSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL 317 (1062)
T ss_pred cChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh
Confidence 56778899999999999999998864210 00001345555555 35554444
Q ss_pred -----eeEEEEEecCCCcEEEeec---CCCEEEEEEecCCccc
Q 000546 188 -----VTMTCITCTDKGRILLAGR---DGNIYELLYTTGSGWY 222 (1432)
Q Consensus 188 -----~~v~~I~gT~~GRIF~gG~---DG~lYEl~Yq~~~gWf 222 (1432)
..+.+|..+++=|+|.|-. +-+.--+.|+..+.-|
T Consensus 318 ~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~ 360 (1062)
T KOG1912|consen 318 SMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTF 360 (1062)
T ss_pred ccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHH
Confidence 4556677778889997754 3477778888887633
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=7.2e+02 Score=31.75 Aligned_cols=165 Identities=16% Similarity=0.362 Sum_probs=92.7
Q ss_pred ccccCCHHHHHHHHhcCCccccccccccccceeEE---------EEeCeEEEEecCCCCCCCccccCCCcceEEEEeecc
Q 000546 62 DTWDLPTVLVERYNAAGGEGNALCGIFPEIRRAWA---------SVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKS 132 (1432)
Q Consensus 62 ~~~~lP~ei~e~~n~~~~q~~~~mGlFpEI~rAW~---------tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkP 132 (1432)
.-+..|..+++-+. . ++..-||| .|- --||.+++||+...... ..|++....+.|++...=
T Consensus 285 ~dvR~~~~~~~~~~-~--H~qeVCgL------kws~d~~~lASGgnDN~~~Iwd~~~~~p~-~~~~~H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 285 HDVRISQHVVSTLQ-G--HRQEVCGL------KWSPDGNQLASGGNDNVVFIWDGLSPEPK-FTFTEHTAAVKALAWCPW 354 (484)
T ss_pred EEEecchhhhhhhh-c--ccceeeee------EECCCCCeeccCCCccceEeccCCCcccc-EEEeccceeeeEeeeCCC
Confidence 45788888888333 1 33333442 343 36899999999655544 678888888888877665
Q ss_pred CCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeecCCCEEE
Q 000546 133 KPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGRDGNIYE 212 (1432)
Q Consensus 133 KpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~DG~lYE 212 (1432)
.+|+. .++. +.+| .-+.+.++. -|..|.+|- -| +-|.-
T Consensus 355 q~~lL--------AsGG------------Gs~D-----~~i~fwn~~------~g~~i~~vd--------tg---sQVcs 392 (484)
T KOG0305|consen 355 QSGLL--------ATGG------------GSAD-----RCIKFWNTN------TGARIDSVD--------TG---SQVCS 392 (484)
T ss_pred ccCce--------EEcC------------CCcc-----cEEEEEEcC------CCcEecccc--------cC---Cceee
Confidence 55543 2210 0111 345555432 123333331 11 12333
Q ss_pred EEEecCCccccccceeeeccCcc-ccccccccCccc----ccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000546 213 LLYTTGSGWYKRCRKVCHTAGVG-NVISRWIVPNVF----RFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 213 l~Yq~~~gWf~rC~Kinht~g~~-S~~~~~llPs~~----~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
|.|. ++-+.++-|.|++ .-+.-|-.|++- ..+....|..++.-+.-..+-|=+.+.++++|.+-..
T Consensus 393 L~Ws------k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 393 LIWS------KKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEc------CCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4433 3334444444432 122223345531 1245677888888888888888888999999999754
No 102
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.48 E-value=3e+02 Score=33.98 Aligned_cols=138 Identities=20% Similarity=0.323 Sum_probs=92.0
Q ss_pred cceeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCC---CCC
Q 000546 91 IRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAG---DGT 167 (1432)
Q Consensus 91 I~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~---~~~ 167 (1432)
.+-|=.+-|+..-||++++.... ..+.|-.+-|..|+ |.++=+||. --||+.+- |-
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l-~~l~gH~~RVs~Va--------fHPsG~~L~-----------TasfD~tWRlWD~- 290 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPL-QDLEGHLARVSRVA--------FHPSGKFLG-----------TASFDSTWRLWDL- 290 (459)
T ss_pred cceeeeccCCceeeeccCCCcch-hhhhcchhhheeee--------ecCCCceee-----------ecccccchhhccc-
Confidence 47888999999999999875443 56777667777776 444455543 33454321 00
Q ss_pred CCCceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEeec-C--CCEEEEEEecCCccccccceeeeccCccccccccccC
Q 000546 168 DPYAEISLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-D--GNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVP 244 (1432)
Q Consensus 168 ~~~~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-D--G~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llP 244 (1432)
....|+.++ .. -+ -.|.+|+...+|-+-..|. | |.||.+-= .|| |.
T Consensus 291 ~tk~ElL~Q-EG-Hs-----~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-------gr~--im--------------- 339 (459)
T KOG0272|consen 291 ETKSELLLQ-EG-HS-----KGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-------GRC--IM--------------- 339 (459)
T ss_pred ccchhhHhh-cc-cc-----cccceeEecCCCceeeccCccchhheeeccc-------CcE--EE---------------
Confidence 011344444 33 33 4567888889999988876 5 47776640 111 11
Q ss_pred cccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeC
Q 000546 245 NVFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 245 s~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
+|. +..++|..+..++.--.|-|=|++++++||||-
T Consensus 340 -~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 340 -FLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred -Eec-ccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 122 467889999999999999999999999999995
No 103
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=22.18 E-value=6.7e+02 Score=34.33 Aligned_cols=167 Identities=16% Similarity=0.160 Sum_probs=96.5
Q ss_pred eeEEEEeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccce--EEEEEeecceEEEEEeeecCCCCCCCCC
Q 000546 93 RAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQ--YLLILATPVELILVGVCCSGAGDGTDPY 170 (1432)
Q Consensus 93 rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~--~lLvvaT~~eI~Llgvs~~~~~~~~~~~ 170 (1432)
++-..++..+-.|+|.-.=.-++..-.....+....+.-++|.-..+.+. ++|+=++.-++++++++-....
T Consensus 404 ~~~~~~~g~~~~r~~~~~~~~~ad~~~i~~~~~f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~~------ 477 (967)
T KOG0974|consen 404 VASKLIDGSIQVRNLSGSLESFADVLNIRSLKEFRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPNDD------ 477 (967)
T ss_pred ehhhccCCcchhhhhhcccccccceeEEeeeeeeccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCcc------
Confidence 33446677777888752111112112233344445555566666666554 7788888888999997543211
Q ss_pred ceeEEeeCCCeEeecCCeeEEEEEecCCCcEEEe-ecCCCEEEEEEecCC--ccc-cccceeeeccCccccccccccCcc
Q 000546 171 AEISLQPLPEYTVPSDGVTMTCITCTDKGRILLA-GRDGNIYELLYTTGS--GWY-KRCRKVCHTAGVGNVISRWIVPNV 246 (1432)
Q Consensus 171 ~el~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~g-G~DG~lYEl~Yq~~~--gWf-~rC~Kinht~g~~S~~~~~llPs~ 246 (1432)
-.-+-+ |...+.+. -.++++.+.++--+|+. |+||+.--|.|.... .|+ .=|.|.+|+.-.+-. +|.+
T Consensus 478 -~~~~~~-~~~~~~~~-~si~~~~~kdn~~~~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~-----~~~~ 549 (967)
T KOG0974|consen 478 -IVLSLS-RSHELDTG-SSITCIRSKDNSAIFMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGA-----LPSK 549 (967)
T ss_pred -ceeecc-Cccccccc-ccEEEEecCCCcEEEEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecc-----hhhh
Confidence 111222 23455554 35778888888888855 568865556665555 599 889999998633225 6765
Q ss_pred cc-cCCCCceEEEEEeCCCceEEEEcCCCe
Q 000546 247 FR-FGAVDPIVELVFDNERQLLYARTEEMK 275 (1432)
Q Consensus 247 ~~-~~~~d~Ivqi~vD~sR~iLYtLs~~s~ 275 (1432)
|. -+...-+.-++ ++--+||..+..-+
T Consensus 550 ~~~~k~n~~~~gf~--st~f~l~n~T~~~~ 577 (967)
T KOG0974|consen 550 FINWKGNLLIVGFY--STSFILWNETNETP 577 (967)
T ss_pred hccCCCceEEEEEE--eccceEeccccCce
Confidence 42 12333344443 46677777766544
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=1.2e+03 Score=27.41 Aligned_cols=159 Identities=18% Similarity=0.355 Sum_probs=95.3
Q ss_pred eeEEEEeCeEEEEecCCCCC--CCccccCCCcceEEEEeeccCCCcccccceEEEEEeecceEEEEEeeecCCCCCCCCC
Q 000546 93 RAWASVDNSLFLWRFDKWDG--QCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPY 170 (1432)
Q Consensus 93 rAW~tIDn~L~LW~Y~~~~~--~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~eI~Llgvs~~~~~~~~~~~ 170 (1432)
-|=++-|..+-+...+++.. .+++.+|-+..+-.|+-+.||-|-|...-.| .-.|+|-- ..+| .-
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY------DgkVIiWk-----e~~g--~w 92 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY------DGKVIIWK-----EENG--RW 92 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec------CceEEEEe-----cCCC--ch
Confidence 45566788999999887553 4578889999999999999999988432211 01111111 1111 01
Q ss_pred ceeEEeeCCCeEeecCCeeEEEEEecC--CCcEEEeec-CCCEEEEEEecCCccc-cccceeeeccCccccccccccCc-
Q 000546 171 AEISLQPLPEYTVPSDGVTMTCITCTD--KGRILLAGR-DGNIYELLYTTGSGWY-KRCRKVCHTAGVGNVISRWIVPN- 245 (1432)
Q Consensus 171 ~el~L~~~~~~sv~tdg~~v~~I~gT~--~GRIF~gG~-DG~lYEl~Yq~~~gWf-~rC~Kinht~g~~S~~~~~llPs- 245 (1432)
.+...+ ......|++|..-+ -|=+.+++. ||.|==|.|..+.+|- +|.. -||..|..|+ .| -|.
T Consensus 93 ~k~~e~-------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-~aH~~GvnsV--sw-apa~ 161 (299)
T KOG1332|consen 93 TKAYEH-------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-FAHEIGVNSV--SW-APAS 161 (299)
T ss_pred hhhhhh-------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-hcccccccee--ee-cCcC
Confidence 112222 12235677887765 588888876 9999999999988996 3322 2688776554 22 332
Q ss_pred ----ccccCCCCceEEEEEeCCCceEEEEcCCCeEEEEEeCCC
Q 000546 246 ----VFRFGAVDPIVELVFDNERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 246 ----~~~~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
.+.-+..+++.. |-+=.-++.+.||+...+
T Consensus 162 ~~g~~~~~~~~~~~kr---------lvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKR---------LVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred CCccccccCcccccce---------eeccCCccceeeeecCCc
Confidence 111112222222 223334668999998654
No 105
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=21.82 E-value=3.3e+02 Score=32.31 Aligned_cols=86 Identities=24% Similarity=0.277 Sum_probs=56.1
Q ss_pred EeCeEEEEecCCCCCCCccccCCCcceEEEEeeccCCCcccccceEEEEEeecce---EEEEEeeecCCCCCCCCCceeE
Q 000546 98 VDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVE---LILVGVCCSGAGDGTDPYAEIS 174 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvvaT~~e---I~Llgvs~~~~~~~~~~~~el~ 174 (1432)
.|..-+|||...+.-. ..|.|-+.-|-+|...+-- .- +||-.| .-|+-+-- ..++.
T Consensus 207 cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G-~a----------fatGSDD~tcRlyDlRa---------D~~~a 265 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSG-DA----------FATGSDDATCRLYDLRA---------DQELA 265 (343)
T ss_pred cccceeeeeccCccee-EeecccccccceEEEccCC-Ce----------eeecCCCceeEEEeecC---------CcEEe
Confidence 7899999999887554 6899999999999874321 11 222222 22322211 13666
Q ss_pred EeeCCCeEeecCCeeEEEEEecCCCcEEEeec-CCC
Q 000546 175 LQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGN 209 (1432)
Q Consensus 175 L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~ 209 (1432)
+|.- +..+.-|+++.-+..||+.|+|- |.+
T Consensus 266 ~ys~-----~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 266 VYSH-----DSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred eecc-----CcccCCceeEEEcccccEEEeeecCCc
Confidence 6642 33445688998889999999986 653
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=1.5e+03 Score=27.10 Aligned_cols=76 Identities=18% Similarity=0.372 Sum_probs=49.5
Q ss_pred CeeEEEEEecCCCcEEEeec-CCCEEEEEEecCCccccccceeeeccCccccccccccCcccccCCCCceEEEEEeCCCc
Q 000546 187 GVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPIVELVFDNERQ 265 (1432)
Q Consensus 187 g~~v~~I~gT~~GRIF~gG~-DG~lYEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~Ivqi~vD~sR~ 265 (1432)
.-.|+.|...+.+..|+.|. |++|+--+-.. ++|.-+-+..+. .+ .+.|++ +
T Consensus 100 ~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-----~~cqg~l~~~~~----------pi-----------~AfDp~-G 152 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-----KKCQGLLNLSGR----------PI-----------AAFDPE-G 152 (311)
T ss_pred CceEEEEEecCCCCeEEecccCCeEEeeEecC-----CCCceEEecCCC----------cc-----------eeECCC-C
Confidence 45789999999999999998 88554322111 566665554321 11 234555 4
Q ss_pred eEEEEcCCC-eEEEEEeCCCCCCCc
Q 000546 266 LLYARTEEM-KLQVFVLGPNGDGPL 289 (1432)
Q Consensus 266 iLYtLs~~s-~I~vy~Lg~~g~~~~ 289 (1432)
+++++..++ .|+.||+-.-+.++.
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCc
Confidence 556665555 999999988777773
Done!