Query 000546
Match_columns 1432
No_of_seqs 193 out of 255
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 17:13:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000546.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_319-322//hhsearch_pdb/000546hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i5p_A Nucleoporin NUP170; hel 1.0 1 1 896.9 31.9 460 871-1427 2-481 (525)
2 3i5q_B Nucleoporin NUP170; hel 1.0 1 1 338.9 15.3 193 1181-1427 5-208 (252)
3 3i4r_B Nuclear pore complex pr 1.0 1 1 75.1 10.9 121 1038-1207 379-502 (644)
4 1xks_A Nuclear pore complex pr 1.0 1 1 47.9 16.0 268 61-356 17-309 (450)
5 3kfo_A Nucleoporin NUP133; nuc 1.0 1 1 39.7 7.7 197 1109-1338 3-207 (288)
6 3cqc_B Nuclear pore complex pr 1.0 1 1 37.6 9.8 83 1111-1207 3-85 (227)
7 4fhn_B Nucleoporin NUP120; pro 1.0 1 1 36.6 11.7 209 935-1211 903-1126(1139)
8 3dwl_C Actin-related protein 2 1.0 1 1 34.8 10.8 145 98-283 31-177 (377)
9 3ow8_A WD repeat-containing pr 1.0 1 1 33.7 11.1 140 95-282 53-194 (321)
10 3iz6_a 40S ribosomal protein R 1.0 1 1 32.9 13.7 154 94-284 82-238 (380)
No 1
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=896.91 Aligned_cols=460 Identities=19% Similarity=0.284 Sum_probs=404.2
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHCC
Q ss_conf 868999999983199998864104644999999842199--9699999999999977317999988---99999978376
Q 000546 871 GTVDDISGRLREGCPSYFKESDYKFFLAVECLERAAVTS--DSEEKENLAREAFNFLSKVPESADL---RTVCRRFEDLR 945 (1432)
Q Consensus 871 ~svd~Is~~Lr~~Cpsf~s~dD~~~~KA~E~L~~Ak~~~--~~~er~~~L~eAl~Lf~kv~~~~~L---~~vc~~~~~l~ 945 (1432)
+|||.||++||++||||||+||+++|||+|+|++|++++ |+++|+++|+||++||++++++++| .++|++|.+|+
T Consensus 2 ~sVd~Is~~Lr~rCpsf~s~dDv~~~KA~E~L~~Ak~~~~~d~~~~~~~L~eAl~Lf~~va~~l~l~~L~~~c~~~~~l~ 81 (525)
T 3i5p_A 2 PSIEYTATALQERCGSFCSASDILGFRAIEHLRRAKEIGLRNYDSLNYHLKNATALLEQIVDDLSIEKLKEAVSMMLSVN 81 (525)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHC----CHHHHHHHHHHHC----------CHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 86899999999668775887999999999999998756578979999999999999998735389999999999999768
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56999899999887229888755----56765366899999999999999999973204788677899988999999899
Q 000546 946 FYEAVVRLPLQKAQALDPAGDAF----NDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPAGPRSALD 1021 (1432)
Q Consensus 946 fy~GvVeL~L~~A~~~Dp~~~al----~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 1021 (1432)
||+|||+|||+||+++||+|.|+ +|+|.+|+|..+|++|++||++|+++|+++++.+....++ .+++ ...++
T Consensus 82 ~y~GaVeL~L~~A~~~Dp~~~Al~~~~~g~p~~D~~~~~f~~R~~cY~~I~~~L~~ld~~a~~~~~~---~~~~-~~~~~ 157 (525)
T 3i5p_A 82 YYPKSIEFLLNIANSMDKGKLACQYVANGFLENDDRKQYYDKRILVYDLVFDTLIKVDELAEKKQSS---KTQN-QISIS 157 (525)
T ss_dssp CHHHHHHHHHHHHHHHHCSSHHHHHHHHTCSSSSSCHHHHHHHHHHHHHHHHHHHHTC----------------------
T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCC-CCCCC
T ss_conf 7688999999999854972217999867999768789999999999999999999999875045788---7776-42335
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 87887999999998840899247999999999638832212346878489986407996012210013321111248889
Q 000546 1022 PASRKKYICQIVQLGVQSPDRIFHEYLYRTMIDLGLENELLEYGGPDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTG 1101 (1432)
Q Consensus 1022 ~~~~~~~~~~~~~~al~S~DelFH~~LYdWLi~~~l~d~LL~i~sP~Le~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g 1101 (1432)
+.++.+.++++|+++++|+||+||++||+|||++|++|+||+++|||||+||+|++
T Consensus 158 ~~~~~~~~~~~~~~~l~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~------------------------ 213 (525)
T 3i5p_A 158 NDDEVKLRQKSYEAALKYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKA------------------------ 213 (525)
T ss_dssp ------CCSTTHHHHSSSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHCC------------------------
T ss_conf 03689999999999974876889999999998679822245179951799997618------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99998513467889999994221999999999975222789899999788999999999994412898875687666654
Q 000546 1102 TPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFD 1181 (1432)
Q Consensus 1102 ~~~~~~~~~~~DLLWryy~k~~~~~~AA~vL~~LA~~~s~~s~~~isL~~RieYLsrAv~~akS~~~~~~~~g~~~~~~~ 1181 (1432)
+++++++|||||||+||++|++||+||++||++ +|+++|++|||||+||+++|++... ++.++ ..
T Consensus 214 ----~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s-----~~~i~L~~RIeyLsrA~~~a~~~~~-----~~~~~-~~ 278 (525)
T 3i5p_A 214 ----GSSLKISNILWVYYSRRSKFFESAEILYRLATS-----NFDITLFERIEFLSRANGFCNSVSP-----LSQKQ-RI 278 (525)
T ss_dssp ----C---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS-----SSCCCHHHHHHHHHHHHHHC------------------
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHHHHHCCC-----CHHHH-HH
T ss_conf ----543167879899999733099999999999727-----8999989999999999998664178-----40478-89
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 10246367689899999999999999981001123554344599999999852122279999999974103787889999
Q 000546 1182 NGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLYN 1261 (1432)
Q Consensus 1182 ~~~l~~Le~kleVaqiQ~~I~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~L~~~Ll~it~Lyn 1261 (1432)
..++++++||||||+||.+|+++|... .|+. ++++++++++||++|+++|+|||
T Consensus 279 ~~l~~~i~e~ldVA~IQ~~il~~l~~~---------------------~r~~-----~e~~~~ai~~L~~~Ll~is~Lyn 332 (525)
T 3i5p_A 279 VQLASRIQDACEVAGIQGDILSLVYTD---------------------ARID-----SAIKDELIKTLDGKILSTSELFN 332 (525)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHC---------------------SSSC-----HHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCCC-----HHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 999999999999999999999999743---------------------4668-----58899999984654768999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC----CC-------HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 82033786568888763048889899578999999999999821----79-------89999999975054468998533
Q 000546 1262 EYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSK----GG-------IAEACSVLKRVGSHMYPGDGAVL 1330 (1432)
Q Consensus 1262 dyA~P~~l~E~~L~Il~~a~~~~~~D~~lI~~~W~~ii~~~~~~----~~-------~~e~~~~i~~LG~~~y~~~~~~F 1330 (1432)
+||+||+||||||+|+|||+| +|+.+|+++|++||++++.. ++ ...+++||++||+++++++ .+|
T Consensus 333 ~yA~p~~l~E~~L~I~~~s~~---~d~~~I~~~W~~li~~~~~e~~~~~~~~~~~~~~~~l~~kv~~lg~~~~~s~-~~F 408 (525)
T 3i5p_A 333 DFAVPLSYHEIALFIFKIADF---RDHEVIMAKWDELFQSLRMEFNNTGKKEDSMNFINLLSNVLIKIGKNVQDSE-FIF 408 (525)
T ss_dssp TTTTTTTCHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-TTC
T ss_pred HHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCC
T ss_conf 987551579999999987079---9868999999999999998741268876626999999999999988637898-807
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
Q ss_conf 67879999999999612456567781169999998628992456732119999999999730012203686333332210
Q 000546 1331 PLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCSW 1410 (1432)
Q Consensus 1331 Pl~~iv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~il~~Y~~L~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 1410 (1432)
|++||+++||++++++++ ...+++|||+++|+++ |+|++.|+++|++|+.+ +|.++
T Consensus 409 Pl~~lv~~LE~~~~~~~~--~~~~~~~wv~~~~~~~-gv~~~~l~~vy~~l~~~---------------------~~~~~ 464 (525)
T 3i5p_A 409 PIFELFPIVCNFFYETLP--KEHIVSGSIVSIFITA-GVSFNKMYYILKELIET---------------------SDSDN 464 (525)
T ss_dssp CHHHHHHHHHHHHHTTSC--GGGCCTTTTHHHHHHH-TCCHHHHHHHHHHHHHH---------------------CCSCC
T ss_pred CHHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHC---------------------CCCHH
T ss_conf 899999999999998512--3689987199999984-99999999999999966---------------------78368
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 01346433659999999
Q 000546 1411 YLESGQCLYLQKEWVQA 1427 (1432)
Q Consensus 1411 ~~~~~~~~~~~~~~~~~ 1427 (1432)
.+.++||+||||+||++
T Consensus 465 ~~~~~~~~~li~~W~~~ 481 (525)
T 3i5p_A 465 SVFNKEMTWLIHEWYKS 481 (525)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999999999998
No 2
>3i5q_B Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 2.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=338.86 Aligned_cols=193 Identities=19% Similarity=0.266 Sum_probs=168.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 41024636768989999999999999998100112355434459999999985212227999999997410378788999
Q 000546 1181 DNGLLDLLEGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAKELSLDLKSITQLY 1260 (1432)
Q Consensus 1181 ~~~~l~~Le~kleVaqiQ~~I~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~L~~~Ll~it~Ly 1260 (1432)
..+|++++|||||||+||.+|+++|.+. .|+. ++.+++++++||++|+++|+||
T Consensus 5 ~~~ll~eieE~LDVA~IQ~~IL~~l~~d---------------------~ri~-----~e~~~~~i~~Ln~~Ll~iSeLy 58 (252)
T 3i5q_B 5 IVQLASRIQDACEVAGIQGDILSLVYTD---------------------ARID-----SAIKDELIKTLDGKILSTSELF 58 (252)
T ss_dssp CCCCCCCGGGHHHHHHHHHHHHHHHHHC---------------------TTSC-----HHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CCCC-----HHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9999999999999999999999998753---------------------3678-----4779999998577576899999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC---C--------HHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9820337865688887630488898995789999999999998217---9--------8999999997505446899853
Q 000546 1261 NEYAVPFELWEICLEMLYFANYTGDADSSIIRETWARLIDQALSKG---G--------IAEACSVLKRVGSHMYPGDGAV 1329 (1432)
Q Consensus 1261 ndyA~P~~l~E~~L~Il~~a~~~~~~D~~lI~~~W~~ii~~~~~~~---~--------~~e~~~~i~~LG~~~y~~~~~~ 1329 (1432)
|+||+||+||||||+|||||+| +|+.+|+++|++||++++.+. + ...+++||++||+++++++ .+
T Consensus 59 ndyAdP~~l~EicL~I~h~sd~---~d~~~I~~~W~~li~~~~~e~~~~~~~~~~~~~~~~l~~kv~~LG~r~~~se-~~ 134 (252)
T 3i5q_B 59 NDFAVPLSYHEIALFIFKIADF---RDHEVIMAKWDELFQSLRMEFNNTGKKEDSMNFINLLSNVLIKIGKNVQDSE-FI 134 (252)
T ss_dssp HHTTTTTTCHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCT-TT
T ss_pred HHHHHHCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CC
T ss_conf 9986151568999999587068---9878999999999999997630168865636899999999999988718898-74
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 36787999999999961245656778116999999862899245673211999999999973001220368633333221
Q 000546 1330 LPLDTLCLHLEKAALERLDSQVESVGDEDIARALLAACKGAAEPVLNTYDQXXXXXXXXYPVELFCRHQTSGYAFFDQCS 1409 (1432)
Q Consensus 1330 FPl~~iv~~LE~~~~~~~~~~~~~~~~~~v~~~ll~a~~~~~e~il~~Y~~L~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1409 (1432)
||+++|+++||+++++++ +.+.++.|||+++|+++ |+|++.|+++|++|+.+ +|++
T Consensus 135 FPl~~Lv~~Le~~~~e~~--~~~~~~~gwv~~~fl~~-gV~~~~L~~vl~~L~~~---------------------~g~~ 190 (252)
T 3i5q_B 135 FPIFELFPIVCNFFYETL--PKEHIVSGSIVSIFITA-GVSFNKMYYILKELIET---------------------SDSD 190 (252)
T ss_dssp SCHHHHHHHHHHHHHHHS--CGGGCCTTTTHHHHHHH-TCCHHHHHHHHHHHHHT---------------------CSSC
T ss_pred CCHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHC-CCCHHHHHHHHHHHHHC---------------------CCCH
T ss_conf 359999999999999861--03689988099999984-99999999999999976---------------------8935
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 001346433659999999
Q 000546 1410 WYLESGQCLYLQKEWVQA 1427 (1432)
Q Consensus 1410 ~~~~~~~~~~~~~~~~~~ 1427 (1432)
+.+..+||+||||+||++
T Consensus 191 ~~~~~~ei~~li~~W~~~ 208 (252)
T 3i5q_B 191 NSVFNKEMTWLIHEWYKS 208 (252)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999998
No 3
>3i4r_B Nuclear pore complex protein NUP133; protein transport, structural protein, kinetochore, mRNA transport, nucleus, phosphoprotein, translocation; 3.53A {Homo sapiens}
Probab=1.00 E-value=1 Score=75.06 Aligned_cols=121 Identities=21% Similarity=0.206 Sum_probs=99.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCC---CCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 08992479999999996388322123468---784899864079960122100133211112488899999851346788
Q 000546 1038 QSPDRIFHEYLYRTMIDLGLENELLEYGG---PDLVPFLQSAGREPIQEVRAVSGITSAASLMGQTGTPIPSNEAKYFDL 1114 (1432)
Q Consensus 1038 ~S~DelFH~~LYdWLi~~~l~d~LL~i~s---P~Le~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~DL 1114 (1432)
...|+-|-..+|+|+|++|...+||+... ++|..||+.. .+|
T Consensus 379 kfg~~~FA~~lf~~yi~~g~~~~LL~~~~~~~~~L~~FL~~~-----------------------------------p~L 423 (644)
T 3i4r_B 379 QFADQNFSDFLFRWYLEKGKRGKLLSQPISQHGQLANFLQAH-----------------------------------EHL 423 (644)
T ss_dssp HSCSSCHHHHTHHHHCC-------------CGGGTHHHHHTC-----------------------------------SSS
T ss_pred HHCCCCHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCC-----------------------------------CCC
T ss_conf 727677589999999977976688608622149999998339-----------------------------------986
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999942219999999999752227898999997889999999999944128988756876666541024636768989
Q 000546 1115 LARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEGKLAV 1194 (1432)
Q Consensus 1115 LWryy~k~~~~~~AA~vL~~LA~~~s~~s~~~isL~~RieYLsrAv~~akS~~~~~~~~g~~~~~~~~~~l~~Le~kleV 1194 (1432)
.|-.....++|..||+.|..||.+. .-.+.+|--.||.|.+++-+.+. + .+...+-+..++..|++
T Consensus 424 sWI~di~~~~y~~Aa~tL~~lA~~E------~~~~~kkk~~LSLaKLa~LAs~~-----~---~~~~~~~l~~i~~~L~l 489 (644)
T 3i4r_B 424 SWLHEINSQELEKAHATLLGLANME------TRYFAKKKTLLGLSKLAALASDF-----S---EDMLQEKIEEMAEQERF 489 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC------CSCHHHHHHHHHHHHHHHHHSCC-----C---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHCCC-----C---CCHHHHHHHHHHHHHHH
T ss_conf 3899998677999999999998610------06899999998899999986489-----8---51078999999987699
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q 000546 1195 LRFQTKIKDELEA 1207 (1432)
Q Consensus 1195 aqiQ~~I~~~L~~ 1207 (1432)
.++|..|.+.+..
T Consensus 490 i~~Qe~L~~~l~~ 502 (644)
T 3i4r_B 490 LLHQETLPEQLLA 502 (644)
T ss_dssp HHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 4
>1xks_A Nuclear pore complex protein NUP133; beta-propeller, helical insertions, protein transport; 2.35A {Homo sapiens} SCOP: b.69.14.1
Probab=1.00 E-value=1 Score=47.92 Aligned_cols=268 Identities=15% Similarity=0.133 Sum_probs=113.6
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 4443--69989999998217864443336312462689980919999638999988633598862679995135788642
Q 000546 61 VDTW--DLPTVLVERYNAAGGEGNALCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFV 138 (1432)
Q Consensus 61 ~~~~--~lP~ei~e~~n~~~~q~~~~mGlFPEI~rAW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~ 138 (1432)
++++ .||..+.|..+....... ..|-+.+-+.||+.-.+++|+|+|...... +- .++.. |--|..+...
T Consensus 17 V~~~~~~LP~~v~eal~~~~~~~~-~sg~i~~~GyAlvv~~~~l~VW~y~~~~~~---~~----~~c~~-lpLp~sd~~~ 87 (450)
T 1xks_A 17 VKTFGSSLPVKVMEALTLAEVDDQ-LTINIDEGGWACLVCKEKLIIWKIALSPIT---KL----SVCKE-LQLPPSDFHW 87 (450)
T ss_dssp EEECSSCCCHHHHHHHHHCCTTSC-EEEEECTTSEEEEEETTEEEEEECCSSCCG---GG----CCEEE-EECCCCSSCC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCC-EEEEECCCCEEEEEECCEEEEEEECCCCCC---CC----CCCEE-CCCCCCCCCC
T ss_conf 854787587779987505677752-699998984799982896999860488777---76----53246-1588434566
Q ss_pred CC-CEEEEEEEEC------CEEEEEEEEECC------CCCCCCCCCEEEEEECC-CEEEECCCE-EEEEEEECCCCCEEE
Q ss_conf 36-2489997402------158999865259------99999998516884079-838525992-599998659996898
Q 000546 139 EA-IQYLLILATP------VELILVGVCCSG------AGDGTDPYAEISLQPLP-EYTVPSDGV-TMTCITCTDKGRILL 203 (1432)
Q Consensus 139 ~~-I~~lLvIaT~------~eI~Llgv~~~~------~~~~~~~~~el~L~~~~-~~sv~tdg~-~v~~I~gT~~GRIF~ 203 (1432)
.. .--++.=++. .+-=++.|+-++ +-...+.+-|+.+.-.+ .+.....++ .-..|.+|..||+|+
T Consensus 88 ~~~lvsi~~~~~~~~~~s~~~pGlliVsptG~VryWesIs~~~~~~ei~~~L~~~E~vt~l~n~epaGfIlaTStgrl~~ 167 (450)
T 1xks_A 88 SADLVALSYSSPSGEAHSTQAVAVMVATREGSIRYWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIR 167 (450)
T ss_dssp CGGGEEEEECC-------CTTEEEEEECTTCEEEEESCTTCTTCCEEEECC----CCEEEEEEETTTEEEEEETTCCEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEE
T ss_conf 78679998488765454678856999907960898600378873399875379970699976128855999925550999
Q ss_pred EECCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 215998889997327753444221530257653322444574233---48988669999847976699980897199999
Q 000546 204 AGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFR---FGAVDPIVELVFDNERQLLYARTEEMKLQVFV 280 (1432)
Q Consensus 204 gG~DG~lyEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~---~~~~d~Ivqi~vD~sR~iLYtLs~~s~I~vy~ 280 (1432)
---+|. +.|. |+.+..++|+.+-|.+ .++|+|. ....-..+.+.-+.....+|+|++++ |+.|+
T Consensus 168 lsirGk-p~l~----------~~~l~~~~G~l~gi~~-~~sSl~G~~s~~~~ia~v~~~~~~g~r~v~ilT~~~-lq~W~ 234 (450)
T 1xks_A 168 LIPESS-GKIH----------QHILPQGQGMLSGIGR-KVSSLFGILSPSSDLTLSSVLWDRERSSFYSLTSSN-ISKWE 234 (450)
T ss_dssp EEECTT-SCEE----------EEECTTCCCC-------------------CCCCEEEEEEETTTTEEEEEESSE-EEEEE
T ss_pred EEECCC-CEEE----------EEEECCCCCCCCCCCC-CCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCC-EEEEE
T ss_conf 985697-5079----------9995689740002330-000002566777635899740578967999984886-37899
Q ss_pred ECCCCCCCCCEEEEEC--CCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECC--CEEEEEEC
Q ss_conf 0789999851022002--22452111247-8655566688999999489998557668653599999559--40899932
Q 000546 281 LGPNGDGPLKKVAEER--NLFNQRDTHHG-GRQTTGQRAPHRSTKPSVVSISPLSTLESKWLHLVAVLSD--GRRMYLST 355 (1432)
Q Consensus 281 Lg~~g~~~~~~v~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~IVsI~pIs~~ES~~l~LVAVT~~--G~RLYfs~ 355 (1432)
+ .+|.+ +++.+.. ..+..+-.... +....... ......+++..+++.. +...+-|++++.. -.+.||-.
T Consensus 235 l-~~~~e--~~~~~~di~~~i~~~l~~~~w~~~~~~e~-~~~~~~~~~LD~~~~~--~~~~iLl~a~~~~~~~~~~y~~l 308 (450)
T 1xks_A 235 L-DDSSE--KHAYSWDINRALKENITDAIWGSESNYEA-IKEGVNIRYLDLKQNC--DGLVILAAAWHSADNPCLIYYSL 308 (450)
T ss_dssp E-CSSCE--EEEEEEEHHHHHHHHHHHHHHTTSTTHHH-HHTTCEEEEEEEEEET--TEEEEEEEEECTTSSSCBEEEEE
T ss_pred E-CCCCC--EEEEEECHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEEEEEECC--CCEEEEEEEECCCCCCCEEEEEE
T ss_conf 3-69983--49996158999999998750344444345-7655527999843848--97099999953788861489999
Q ss_pred C
Q ss_conf 8
Q 000546 356 S 356 (1432)
Q Consensus 356 ~ 356 (1432)
.
T Consensus 309 ~ 309 (450)
T 1xks_A 309 I 309 (450)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 5
>3kfo_A Nucleoporin NUP133; nuclear pore complex, yeast, proteolysis, structural genomics, PSI2, protein structure initiative; HET: MSE; 1.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=39.74 Aligned_cols=197 Identities=16% Similarity=0.127 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 34678899999942219999999999752227898999997889999999999944128988756876666541024636
Q 000546 1109 AKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLL 1188 (1432)
Q Consensus 1109 ~~~~DLLWryy~k~~~~~~AA~vL~~LA~~~s~~s~~~isL~~RieYLsrAv~~akS~~~~~~~~g~~~~~~~~~~l~~L 1188 (1432)
.+|..+=|-.+.-.++|..||+.|..||...+ +.+-.|..|-=.||.|.+++-+... . +.+.+-+...
T Consensus 3 p~YaklSWI~dI~~~dY~~AA~tL~~lA~~~~---~~e~~l~~kkv~LSLAKLs~LA~~e-----~----~~~~~~L~~I 70 (288)
T 3kfo_A 3 LKYGHVAWIQQILDGSYADAMNTLKNITVDDS---KKGESLSECELHLNVAKLSSLLVEK-----D----NLDINTLRKI 70 (288)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHCC-----C----CCCHHHHHHH
T ss_conf 65442349999860549999999999872025---4322367789997599999987066-----7----4318999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHCCCCHHHHHHHHH--C
Q ss_conf 76898999999999999999810011235543445999999998521222799999999-74103787889999820--3
Q 000546 1189 EGKLAVLRFQTKIKDELEAIASSLETSVDMSESTQNGSAPDSSSTTDANYAKIVREKAK-ELSLDLKSITQLYNEYA--V 1265 (1432)
Q Consensus 1189 e~kleVaqiQ~~I~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~-~L~~~Ll~it~LyndyA--~ 1265 (1432)
+..|++.++|..+.+.+... .. .++ .+- .+..+.+..++.+. -++.+-+++.+|-+-|. +
T Consensus 71 ~~eLdlI~~Q~~L~~~i~~~-~~--------------~~~-k~~-~~~al~~lf~~~~~kL~~~~~L~~~eLIDLLTLid 133 (288)
T 3kfo_A 71 QYNLDTIDAEKNISNKLKKG-EV--------------QIC-KRF-KNGSIREVFNILVEELKSTTVVNLSDLVELYSMLD 133 (288)
T ss_dssp CCCHHHHHHHHHHHHHHHHT-CS--------------CBC-GGG-SSHHHHHHHHHHHHHHHSSSCCCHHHHHHHHTTBC
T ss_pred HHCCHHHHHHHHHHHHHHHH-HH--------------HHH-HHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 86008979999999999986-66--------------888-776-05999999999999997787278999999998058
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHH
Q ss_conf 37865688887630488898995----78999999999999821798999999997-505446899853367879999
Q 000546 1266 PFELWEICLEMLYFANYTGDADS----SIIRETWARLIDQALSKGGIAEACSVLKR-VGSHMYPGDGAVLPLDTLCLH 1338 (1432)
Q Consensus 1266 P~~l~E~~L~Il~~a~~~~~~D~----~lI~~~W~~ii~~~~~~~~~~e~~~~i~~-LG~~~y~~~~~~FPl~~iv~~ 1338 (1432)
+-.=+-..|.++...++. -++ .+.+.+|++++-+--..-+-..+...+.. +-.++|.+. -|||..+-.+
T Consensus 134 ~~~~F~~ALkvL~~~~~~--~~~e~~~~l~~lIWRRcilrDd~~~~~TaLy~tL~~~~~~~l~~~~--~~~lp~~~~l 207 (288)
T 3kfo_A 134 DEESLFIPLRLLSVDGNL--LNFEVKKFLNALVWRRIVLLNASNEGDKLLQHIVKRVFDEELPKNN--DFPLPSVDLL 207 (288)
T ss_dssp SHHHHHHHHHHHHHHGGG--SCHHHHHHHHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHTTHHHHS--CEECCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHH
T ss_conf 706799999999846444--9979999999999999996267741220999999999974620168--8789725777
No 6
>3cqc_B Nuclear pore complex protein NUP133; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3cqg_B
Probab=1.00 E-value=1 Score=37.64 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 67889999994221999999999975222789899999788999999999994412898875687666654102463676
Q 000546 1111 YFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEKDAPTLDQRRQYLSNAILQAKNATNSDSLVGSTRGAFDNGLLDLLEG 1190 (1432)
Q Consensus 1111 ~~DLLWryy~k~~~~~~AA~vL~~LA~~~s~~s~~~isL~~RieYLsrAv~~akS~~~~~~~~g~~~~~~~~~~l~~Le~ 1190 (1432)
+.+|-|-.+...++|..||+.|..||.+.. -.+.+|--.||.|.+++-+...+ .+...+-+..++.
T Consensus 3 ~~~LsWI~di~~~dy~~Aa~tL~~LA~~e~------~~l~~kk~~LSLAKLa~LA~~~~--------~~~~~~~l~~i~~ 68 (227)
T 3cqc_B 3 SHMLSWLHEINSQELEKAHATLLGLANMET------RYFAKKKTLLGLSKLAALASDFS--------EDMLQEKIEEMAE 68 (227)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHHHHHHHCC------SCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHH
T ss_conf 883239999987619999999999986011------57999999988999999855577--------6118999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89899999999999999
Q 000546 1191 KLAVLRFQTKIKDELEA 1207 (1432)
Q Consensus 1191 kleVaqiQ~~I~~~L~~ 1207 (1432)
.|++.++|..|.+.+..
T Consensus 69 ~L~li~iQe~L~~~~l~ 85 (227)
T 3cqc_B 69 QERFLLHQETLPEQLLA 85 (227)
T ss_dssp HHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 88899999999999999
No 7
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=1.00 E-value=1 Score=36.60 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=106.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999978376569998999998872298887555676536689999999999999999997320478867789998899
Q 000546 935 RTVCRRFEDLRFYEAVVRLPLQKAQALDPAGDAFNDQIDAATREYALVQRQQCYEIITSALRSLKGDSSQREFGSPVRPA 1014 (1432)
Q Consensus 935 ~~vc~~~~~l~fy~GvVeL~L~~A~~~Dp~~~al~~~~~~~~r~~~~~~R~~cY~~I~~~L~~l~~~~~~~~~~~~~~~~ 1014 (1432)
..++..|.+.+.|+.||+++..+-+..++.. .+ -+...|-.||+..-.+-.-
T Consensus 903 ~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~--------~~-------~~~~l~~~iFk~~L~l~~y------------- 954 (1139)
T 4fhn_B 903 LHLSKKLFEESAYIDALEFSLLADASKETDD--------ED-------LSIAITHETLKTACAAGKF------------- 954 (1139)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHCCSCC--------HH-------HHHHHHHHHHHHHHHHCCS-------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--------HH-------HHHHHHHHHHHHHHHHCCH-------------
T ss_conf 9999999871898999999999987416898--------04-------5789999999998762779-------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCCHHHHH---HHHHHHHHCCCCCCCCCCCCCC----HHHHHHHCCCCCHHHHHH
Q ss_conf 99998998788799999999884-089924799---9999999638832212346878----489986407996012210
Q 000546 1015 GPRSALDPASRKKYICQIVQLGV-QSPDRIFHE---YLYRTMIDLGLENELLEYGGPD----LVPFLQSAGREPIQEVRA 1086 (1432)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~al-~S~DelFH~---~LYdWLi~~~l~d~LL~i~sP~----Le~yL~~~~~~~~~~~~~ 1086 (1432)
.. +|.... ..+.++.+. .|=.-|.+++..++|+.+.=|- ++..|..+++..
T Consensus 955 ------e~---------Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~------ 1013 (1139)
T 4fhn_B 955 ------DA---------AHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQM------ 1013 (1139)
T ss_dssp ------GG---------GGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHH------
T ss_pred ------HH---------HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHC------
T ss_conf ------99---------999998689989999999999999983897303327999667999999999998727------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCC--CCCCHH-HHHHHHHHHHHHH
Q ss_conf 0133211112488899999851346788999999422199999999997522278989--999978-8999999999994
Q 000546 1087 VSGITSAASLMGQTGTPIPSNEAKYFDLLARYYVLKRQHLLAAHVLLRLAERRSTDEK--DAPTLD-QRRQYLSNAILQA 1163 (1432)
Q Consensus 1087 ~~~~~~~~~~~~~~g~~~~~~~~~~~DLLWryy~k~~~~~~AA~vL~~LA~~~s~~s~--~~isL~-~RieYLsrAv~~a 1163 (1432)
+-+ .+...|+++|.-||..|++|-.||.|+|.-|.|=...++ ..-.++ ++-.||. |+.+-
T Consensus 1014 -~~~---------------~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~yL~-~INaL 1076 (1139)
T 4fhn_B 1014 -INV---------------ESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEHYLI-VLNTL 1076 (1139)
T ss_dssp -HHH---------------CCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHH
T ss_pred -CCC---------------CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHHHH
T ss_conf -764---------------3488777776742022698689999999999975012234551168999999999-99988
Q ss_pred HHCCCCCC-CCC--CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41289887-568--766-6654102463676898999999999999999810
Q 000546 1164 KNATNSDS-LVG--STR-GAFDNGLLDLLEGKLAVLRFQTKIKDELEAIASS 1211 (1432)
Q Consensus 1164 kS~~~~~~-~~g--~~~-~~~~~~~l~~Le~kleVaqiQ~~I~~~L~~~~~~ 1211 (1432)
+.....+. ..- ... ......... ++-+++..|+++-..+|.+++..
T Consensus 1077 slvd~~~aWIl~~~~~~~~~~~~~~~~--r~vvtL~DirkEY~~~l~rla~~ 1126 (1139)
T 4fhn_B 1077 ELLPKEDTWILVTDMSVDKEPDPNFLP--QKLLTLDAIVAEYHLQLKDVAVQ 1126 (1139)
T ss_dssp HHSCSSCCCCCC-----------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHCEEEECCCCCCCCCCCCCCC--EEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 659930177973477665567877776--07988899899999999999986
No 8
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=34.78 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=76.3
Q ss_pred EECEEEEEECCCCC-CCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 80919999638999-98863359886267999513578864236248999740215899986525999999998516884
Q 000546 98 VDNSLFLWRFDKWD-GQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEISLQ 176 (1432)
Q Consensus 98 IDn~L~LW~Y~~~~-~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvIaT~~eI~Llgv~~~~~~~~~~~~~el~L~ 176 (1432)
-|+.+.+|+...+. .....+.+-...|.++..-. . =++++..+..-.|.+.-+.-.. ..
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~-------~~~l~s~s~d~~v~vwd~~~~~-----------~~- 90 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-K-------SNRIVTCSQDRNAYVYEKRPDG-----------TW- 90 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-T-------TCCEEEEETTSSEEEC-----------------CC-
T ss_pred CCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEC-C-------CCEEEEEECCCEEEEEECCCCC-----------CE-
T ss_conf 99979999836996489899806896299999928-9-------9989999089829999727777-----------23-
Q ss_pred ECCCEEEECCCEEEEEEEECCCCCEEEEEC-CCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 079838525992599998659996898215-9988899973277534442215302576533224445742334898866
Q 000546 177 PLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAVDPI 255 (1432)
Q Consensus 177 ~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lyEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~d~I 255 (1432)
.+........-.++++.-.++|+.|+.|. ||.|+-........|. +...+.......|
T Consensus 91 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--------------------~~~~~~~~h~~~v 149 (377)
T 3dwl_C 91 -KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW--------------------VSKHLKRPLRSTI 149 (377)
T ss_dssp -CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC--------------------CCEEECSSCCSCE
T ss_pred -EEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCE--------------------EEEEEECCCCCCE
T ss_conf -1235750568856799989989989998069719999977866432--------------------5467624668973
Q ss_pred EEEEEECCCCEEEEECCCCEEEEEEECC
Q ss_conf 9999847976699980897199999078
Q 000546 256 VELVFDNERQLLYARTEEMKLQVFVLGP 283 (1432)
Q Consensus 256 vqi~vD~sR~iLYtLs~~s~I~vy~Lg~ 283 (1432)
..+++.+..++|++-+.+++|++|++..
T Consensus 150 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 177 (377)
T 3dwl_C 150 LSLDWHPNNVLLAAGCADRKAYVLSAYV 177 (377)
T ss_dssp EEEEECTTSSEEEEEESSSCEEEEEECC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEEEEE
T ss_conf 8999869997799980798799999886
No 9
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=33.70 Aligned_cols=140 Identities=11% Similarity=0.175 Sum_probs=76.4
Q ss_pred EEEEECEEEEEECCCCCCCC-CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCEE
Q ss_conf 89980919999638999988-63359886267999513578864236248999740215899986525999999998516
Q 000546 95 WASVDNSLFLWRFDKWDGQC-PEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEI 173 (1432)
Q Consensus 95 W~tIDn~L~LW~Y~~~~~~~-~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvIaT~~eI~Llgv~~~~~~~~~~~~~el 173 (1432)
=.+-|..+-+|++..+.... ..++|-...|.+|..-... ..+..-+..-.|.+.-+. .+ ..+
T Consensus 53 tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~--------~~l~s~s~D~~i~lWd~~-----~~----~~~ 115 (321)
T 3ow8_A 53 TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL--------PIAASSSLDAHIRLWDLE-----NG----KQI 115 (321)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS--------SEEEEEETTSEEEEEETT-----TT----EEE
T ss_pred EECCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC--------CEEEEEECCCCEEEEECC-----CC----CEE
T ss_conf 9849998999889899743666005677888999988999--------989999379809999789-----99----798
Q ss_pred EEEECCCEEEECCCEEEEEEEECCCCCEEEEEC-CCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 884079838525992599998659996898215-9988899973277534442215302576533224445742334898
Q 000546 174 SLQPLPEYTVPSDGVTMTCITCTDKGRILLAGR-DGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGAV 252 (1432)
Q Consensus 174 ~L~~~~~~sv~tdg~~v~~I~gT~~GRIF~gG~-DG~lyEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~~ 252 (1432)
. .+......+.++.-+++|+.++.|. ||.++-..... + ++ ... + ....
T Consensus 116 ~-------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~--~---~~-----------------~~~-~-~~~~ 164 (321)
T 3ow8_A 116 K-------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES--G---KK-----------------EYS-L-DTRG 164 (321)
T ss_dssp E-------EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT--C---SE-----------------EEE-E-ECSS
T ss_pred E-------EEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCC--C---CE-----------------EEE-E-CCCC
T ss_conf 9-------9937985679999999999899983899199998679--9---46-----------------677-4-3899
Q ss_pred CCEEEEEEECCCCEEEEECCCCEEEEEEEC
Q ss_conf 866999984797669998089719999907
Q 000546 253 DPIVELVFDNERQLLYARTEEMKLQVFVLG 282 (1432)
Q Consensus 253 d~Ivqi~vD~sR~iLYtLs~~s~I~vy~Lg 282 (1432)
..|..+++.+..++|.+-+.++.|++||+.
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~ 194 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIA 194 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CEEEEEEECCCCCEEEEECCCCEEEEEECC
T ss_conf 429999998999999999289839999999
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=1.00 E-value=1 Score=32.91 Aligned_cols=154 Identities=10% Similarity=0.103 Sum_probs=73.5
Q ss_pred EEEEEECEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCCEE
Q ss_conf 68998091999963899998863359886267999513578864236248999740215899986525999999998516
Q 000546 94 AWASVDNSLFLWRFDKWDGQCPEYTGEEQVICAVGLAKSKPGIFVEAIQYLLILATPVELILVGVCCSGAGDGTDPYAEI 173 (1432)
Q Consensus 94 AW~tIDn~L~LW~Y~~~~~~~~~fd~~~~~I~aV~LVkPKpGVF~~~I~~lLvIaT~~eI~Llgv~~~~~~~~~~~~~el 173 (1432)
+=.+-|..+.+||...+... ..+.+-...|.+|+. -++=+++..-.....|.+.-+.-....+++ +
T Consensus 82 ~s~s~D~~v~iWd~~~~~~~-~~~~~h~~~v~~~~~--------s~~g~~las~~~d~~v~iw~~~~~~~~~~~-----~ 147 (380)
T 3iz6_a 82 VSASQDGRLIVWNALTSQKT-HAIKLHCPWVMECAF--------APNGQSVACGGLDSACSIFNLSSQADRDGN-----M 147 (380)
T ss_dssp EEEETTSEEEEEETTTTEEE-EEEECCCTTCCCCEE--------CTTSSEEEECCSSSCCEEEECCCCSSCCCS-----S
T ss_pred EEEECCCEEEEEECCCCCCC-EEEECCCCCEEEEEE--------CCCCCEEEEEECCCCEEEEECCCCCCCCCC-----C
T ss_conf 99918980999878888601-488559987899999--------899998999547985899989777555677-----3
Q ss_pred EEEECCCEEEECCCEEEEEEEECC-CC-CEEEEECCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 884079838525992599998659-99-6898215998889997327753444221530257653322444574233489
Q 000546 174 SLQPLPEYTVPSDGVTMTCITCTD-KG-RILLAGRDGNIYELLYTTGSGWYKRCRKVCHTAGVGNVISRWIVPNVFRFGA 251 (1432)
Q Consensus 174 ~L~~~~~~sv~tdg~~v~~I~gT~-~G-RIF~gG~DG~lyEl~Yq~~~gWf~rC~Kinht~g~~S~~~~~llPs~~~~~~ 251 (1432)
.+. ....-+.-.+.++.-.+ .+ +++-|+.||.|.-..... ++|-+ . +...+....
T Consensus 148 ~~~----~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-----~~~~~---------~-----~~~~~~~~h 204 (380)
T 3iz6_a 148 PVS----RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-----GQRIS---------I-----FGSEFPSGH 204 (380)
T ss_dssp TTC----CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT-----CCEEE---------E-----ECCCSSSSC
T ss_pred CCE----EECCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEECCC-----CCEEE---------E-----EECCCCCCC
T ss_conf 312----640689754689999648997899977998199998677-----95789---------9-----605667887
Q ss_pred CCCEEEEEEEC-CCCEEEEECCCCEEEEEEECCC
Q ss_conf 88669999847-9766999808971999990789
Q 000546 252 VDPIVELVFDN-ERQLLYARTEEMKLQVFVLGPN 284 (1432)
Q Consensus 252 ~d~Ivqi~vD~-sR~iLYtLs~~s~I~vy~Lg~~ 284 (1432)
...|..+.+.. ..++|++=+.+++|++||+...
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~ 238 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred CCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC
T ss_conf 5676999920699998999978986999978889
Done!