Query 000547
Match_columns 1432
No_of_seqs 211 out of 215
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 17:58:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000547.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_319-322//hhsearch_scop/000547hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sg1x3 g.24.1.1 (X:96-137) Lo 93.7 0.012 9.1E-07 32.4 1.9 30 796-826 3-41 (42)
2 d1jmab1 g.24.1.1 (B:4-59) Cell 90.5 0.059 4.3E-06 27.9 2.1 36 798-833 1-41 (56)
3 d1exta1 g.24.1.1 (A:13-71) Tum 89.6 0.085 6.2E-06 26.8 2.3 41 796-836 1-50 (59)
4 d1jmab1 g.24.1.1 (B:4-59) Cell 88.0 0.14 1E-05 25.3 2.5 35 795-830 13-56 (56)
5 d2heyr3 g.24.1.1 (R:29-82) Tum 84.4 0.19 1.4E-05 24.5 1.7 39 797-835 2-45 (54)
6 d2heyr3 g.24.1.1 (R:29-82) Tum 82.7 0.29 2.1E-05 23.2 2.1 30 796-827 16-54 (54)
7 d1kloa1 g.3.11.2 (A:11-65) Lam 77.9 0.5 3.7E-05 21.6 1.9 43 788-831 13-55 (55)
8 d1n8yc4 g.3.9.1 (C:489-608) Pr 40.8 4.3 0.00031 15.4 1.0 34 797-830 21-55 (120)
9 d1kloa2 g.3.11.2 (A:66-121) La 30.5 9.3 0.00068 13.1 1.4 32 797-830 24-55 (56)
10 d1s78a4 g.3.9.1 (A:489-564) Pr 26.7 9.3 0.00068 13.1 0.8 36 796-831 19-55 (76)
11 d1jv2b5 g.3.11.6 (B:563-605) I 25.5 9.4 0.00069 13.1 0.7 15 797-811 25-40 (43)
12 d2d8xa1 g.39.1.3 (A:33-64) Pin 23.9 6.5 0.00048 14.2 -0.4 19 810-831 10-28 (32)
13 d1igra3 g.3.9.1 (A:150-299) Ty 21.9 14 0.001 12.0 2.3 32 797-830 112-146 (150)
No 1
>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=93.75 E-value=0.012 Score=32.40 Aligned_cols=30 Identities=33% Similarity=0.778 Sum_probs=24.3
Q ss_pred CCCCCCCC---------CCCCEECCCCCEECCCCCCCCCC
Q ss_conf 57999765---------31001389995002369999772
Q 000547 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALC 826 (1432)
Q Consensus 796 ~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C 826 (1432)
..||+|++ .+-|++||.|||.+++ |..+.|
T Consensus 3 s~CppG~GV~~~gt~~~DT~C~~C~~GtFSd~~-Ss~~~C 41 (42)
T d1sg1x3 3 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEA-NHVDPC 41 (42)
T ss_dssp CCBCTTEEEEECCBTTBCCEEEECCTTEECCSC-BSSCCC
T ss_pred CCCCCCCCEEECCCCCCCCEEEECCCCCCCCCC-CCCCCC
T ss_conf 638898585243868889344389398644867-775756
No 2
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.52 E-value=0.059 Score=27.89 Aligned_cols=36 Identities=19% Similarity=0.540 Sum_probs=17.9
Q ss_pred CCCCCC---CCCCEECCCCCEECCC--CCCCCCCCCCCCCC
Q ss_conf 999765---3100138999500236--99997721289999
Q 000547 798 CPRGLY---GVFCEECPVGTFKNVS--GSDRALCRNCSSNE 833 (1432)
Q Consensus 798 CP~G~~---G~fC~eCP~GtYKn~~--Gs~~~~C~pCp~~~ 833 (1432)
|++|.| +.=|..||.|+|.... ......|.|||.++
T Consensus 1 C~~geY~~~~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gt 41 (56)
T d1jmab1 1 CKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCPPGT 41 (56)
T ss_dssp CCTTBCCBTTBCCBCBCTTEEEEECCCSSSCCEEEECCTTE
T ss_pred CCCCCEECCCEECCCCCCCCEECCCCCCCCCCEECCCCCCC
T ss_conf 99873858990859899996375457799898645394897
No 3
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.63 E-value=0.085 Score=26.82 Aligned_cols=41 Identities=32% Similarity=0.839 Sum_probs=29.0
Q ss_pred CCCCCCCC------CCCCEECCCCCEECCC--CC-CCCCCCCCCCCCCCC
Q ss_conf 57999765------3100138999500236--99-997721289999999
Q 000547 796 KACPRGLY------GVFCEECPVGTFKNVS--GS-DRALCRNCSSNELPH 836 (1432)
Q Consensus 796 ~~CP~G~~------G~fC~eCP~GtYKn~~--Gs-~~~~C~pCp~~~lp~ 836 (1432)
..||.|-| +.=|..||.|+|.... ++ ....|.||+.+++-.
T Consensus 1 s~C~~g~Y~~~~~~~~cC~~CppG~~~~~~Ct~~~~~t~C~pC~~gtyt~ 50 (59)
T d1exta1 1 SVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTA 50 (59)
T ss_dssp CCCCTTEEECSSCTTCEEECBCTTEEEEECCSSTTSCCEEEECCTTEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCEECCCCCCCCCC
T ss_conf 97888642066899869999899976667568989799854597897227
No 4
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.02 E-value=0.14 Score=25.32 Aligned_cols=35 Identities=31% Similarity=0.748 Sum_probs=26.6
Q ss_pred CCCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCCCCC
Q ss_conf 457999765---------310013899950023699997721289
Q 000547 795 GKACPRGLY---------GVFCEECPVGTFKNVSGSDRALCRNCS 830 (1432)
Q Consensus 795 g~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~pCp 830 (1432)
=+.||+|.| ..-|++||.|||.... +....|+||.
T Consensus 13 C~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~-n~~~~C~~Cr 56 (56)
T d1jmab1 13 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHL-NGLSKCLQCQ 56 (56)
T ss_dssp CBCBCTTEEEEECCCSSSCCEEEECCTTEECSSC-BCSSCCEECC
T ss_pred CCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCC-CCCCCCCCCC
T ss_conf 5989999637545779989864539489741778-9997266688
No 5
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.42 E-value=0.19 Score=24.45 Aligned_cols=39 Identities=26% Similarity=0.515 Sum_probs=25.5
Q ss_pred CCCCCCC---CCCCEECCCCCEECCCC--CCCCCCCCCCCCCCC
Q ss_conf 7999765---31001389995002369--999772128999999
Q 000547 797 ACPRGLY---GVFCEECPVGTFKNVSG--SDRALCRNCSSNELP 835 (1432)
Q Consensus 797 ~CP~G~~---G~fC~eCP~GtYKn~~G--s~~~~C~pCp~~~lp 835 (1432)
.|+.+-| |.=|..||.|+|....- .....|.|||.+++.
T Consensus 2 ~C~~~eY~~~g~CC~~C~pG~~~~~~Cs~~~~t~C~pC~~gtyt 45 (54)
T d2heyr3 2 HCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYN 45 (54)
T ss_dssp CBCSSEEEETTEEEECBCTTEEEEECCCSSCCCEEEECCTTEEC
T ss_pred CCCCCCCCCCCEECCCCCCCCEECCCCCCCCCCEECCCCCCCCC
T ss_conf 67867284789187889899717675789999856518389731
No 6
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.71 E-value=0.29 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.629 Sum_probs=21.9
Q ss_pred CCCCCCCC---------CCCCEECCCCCEECCCCCCCCCCC
Q ss_conf 57999765---------310013899950023699997721
Q 000547 796 KACPRGLY---------GVFCEECPVGTFKNVSGSDRALCR 827 (1432)
Q Consensus 796 ~~CP~G~~---------G~fC~eCP~GtYKn~~Gs~~~~C~ 827 (1432)
+.||||.| ...|++||.|||.... +.+.|+
T Consensus 16 ~~C~pG~~~~~~Cs~~~~t~C~pC~~gtyt~~~--N~~~Ck 54 (54)
T d2heyr3 16 HECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVV--SSKPCK 54 (54)
T ss_dssp ECBCTTEEEEECCCSSCCCEEEECCTTEECCSC--BSSCCE
T ss_pred CCCCCCCEECCCCCCCCCCEECCCCCCCCCCCC--CCCCCC
T ss_conf 889899717675789999856518389731765--634569
No 7
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=77.86 E-value=0.5 Score=21.63 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=33.6
Q ss_pred CCCCEEECCCCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCC
Q ss_conf 68944974579997653100138999500236999977212899
Q 000547 788 GGNGTVTGKACPRGLYGVFCEECPVGTFKNVSGSDRALCRNCSS 831 (1432)
Q Consensus 788 G~nGTi~g~~CP~G~~G~fC~eCP~GtYKn~~Gs~~~~C~pCp~ 831 (1432)
...++++=..|++|+.|..|+.|..|+|-+-.. ....|+||.+
T Consensus 13 ~~~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P~~-~~g~C~pC~P 55 (55)
T d1kloa1 13 PKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLG-SNGPVRLCRP 55 (55)
T ss_dssp SSSCCEEECSCCTTEESTTSCEECTTEEEETTC-TTSSCEEEEE
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
T ss_conf 799998868998888168612367754448666-8996836969
No 8
>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=40.84 E-value=4.3 Score=15.38 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCE-ECCCCCEECCCCCCCCCCCCCC
Q ss_conf 799976531001-3899950023699997721289
Q 000547 797 ACPRGLYGVFCE-ECPVGTFKNVSGSDRALCRNCS 830 (1432)
Q Consensus 797 ~CP~G~~G~fC~-eCP~GtYKn~~Gs~~~~C~pCp 830 (1432)
.|...++...|+ +||.+++.+..-.....|++|.
T Consensus 21 ~C~~~~~~~~Cv~~C~~~~~~~~~~~~~~~C~~C~ 55 (120)
T d1n8yc4 21 NCSHFLRGQECVEECRVWKGLPREYVSDKRCLPCH 55 (120)
T ss_dssp SBSSEEETTEEESCCSSSSSSSCEECSSSBCEECC
T ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf 13054348814255777667886657799277768
No 9
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.48 E-value=9.3 Score=13.14 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCC
Q ss_conf 7999765310013899950023699997721289
Q 000547 797 ACPRGLYGVFCEECPVGTFKNVSGSDRALCRNCS 830 (1432)
Q Consensus 797 ~CP~G~~G~fC~eCP~GtYKn~~Gs~~~~C~pCp 830 (1432)
.|.+...|..|++|-.|+|-+-+ ...-|+||.
T Consensus 24 ~C~~nt~G~~Cd~C~~G~yg~~~--~~~~C~~C~ 55 (56)
T d1kloa2 24 KCIYNTAGFYCDRCKEGFFGNPL--APNPADKCK 55 (56)
T ss_dssp CBCTTEETTTTCEECTTEEECTT--CSSGGGSEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCC
T ss_conf 89798877884756677645888--898887775
No 10
>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.74 E-value=9.3 Score=13.13 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCE-ECCCCCEECCCCCCCCCCCCCCC
Q ss_conf 5799976531001-38999500236999977212899
Q 000547 796 KACPRGLYGVFCE-ECPVGTFKNVSGSDRALCRNCSS 831 (1432)
Q Consensus 796 ~~CP~G~~G~fC~-eCP~GtYKn~~Gs~~~~C~pCp~ 831 (1432)
..|...+|...|+ +||.++|.+........|+||..
T Consensus 19 ~~C~~~~~~~~Cv~~C~~~~~~~~~~~~~~~C~~C~~ 55 (76)
T d1s78a4 19 VNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHP 55 (76)
T ss_dssp SSBSSEEETTEEESSCSSSSCSSCEEESSSCEEECCT
T ss_pred HHCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHCH
T ss_conf 4253634488111227788776734788880131376
No 11
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.50 E-value=9.4 Score=13.10 Aligned_cols=15 Identities=53% Similarity=1.325 Sum_probs=12.5
Q ss_pred CC-CCCCCCCCCEECC
Q ss_conf 79-9976531001389
Q 000547 797 AC-PRGLYGVFCEECP 811 (1432)
Q Consensus 797 ~C-P~G~~G~fC~eCP 811 (1432)
.| .+||+|-+|++||
T Consensus 25 ~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 25 VCIQPGSYGDTCEKCP 40 (43)
T ss_dssp EECCSSCBSTTSCBCT
T ss_pred EECCCCCCCCCCCCCC
T ss_conf 8289984287535588
No 12
>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.93 E-value=6.5 Score=14.16 Aligned_cols=19 Identities=42% Similarity=0.877 Sum_probs=15.3
Q ss_pred CCCCCEECCCCCCCCCCCCCCC
Q ss_conf 8999500236999977212899
Q 000547 810 CPVGTFKNVSGSDRALCRNCSS 831 (1432)
Q Consensus 810 CP~GtYKn~~Gs~~~~C~pCp~ 831 (1432)
-++|+-||. .+.+|+||.+
T Consensus 10 AD~GFvKna---gR~LCrpch~ 28 (32)
T d2d8xa1 10 ADIGFVKNA---GRHLCRPCHN 28 (32)
T ss_dssp SSSCCEEET---TEEECHHHHH
T ss_pred HHHHHHHCC---CCCCCCHHHH
T ss_conf 872136406---6301540110
No 13
>d1igra3 g.3.9.1 (A:150-299) Type 1 insulin-like growth factor receptor Cys-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.85 E-value=14 Score=11.95 Aligned_cols=32 Identities=31% Similarity=0.636 Sum_probs=14.9
Q ss_pred CCCCCCC--CCCCE-ECCCCCEECCCCCCCCCCCCCC
Q ss_conf 7999765--31001-3899950023699997721289
Q 000547 797 ACPRGLY--GVFCE-ECPVGTFKNVSGSDRALCRNCS 830 (1432)
Q Consensus 797 ~CP~G~~--G~fC~-eCP~GtYKn~~Gs~~~~C~pCp 830 (1432)
.|+.|++ +..|+ +||.|+|.+.. ....|++|.
T Consensus 112 ~c~~~~~~~~~~C~~~Cp~g~~~~~~--~~~~C~~C~ 146 (150)
T d1igra3 112 SDSEGFVIHDGECMQECPSGFIRNGS--QSMYCIPCE 146 (150)
T ss_dssp CCSCCCEEETTEEESSCCTTEEESST--TCSCEEECS
T ss_pred CCCCEEEEECCEECCCCCCCEEECCC--CCCEECCCC
T ss_conf 47441563799882308998183699--899779779
Done!