Query 000548
Match_columns 1431
No_of_seqs 218 out of 717
Neff 8.1
Searched_HMMs 46136
Date Mon Apr 1 18:53:26 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1896 mRNA cleavage and poly 100.0 9E-196 2E-200 1751.8 114.0 1286 2-1431 1-1366(1366)
2 KOG1897 Damage-specific DNA bi 100.0 1E-157 2E-162 1402.1 107.1 1067 2-1427 1-1095(1096)
3 KOG1898 Splicing factor 3b, su 100.0 5E-143 1E-147 1279.5 82.7 1130 3-1428 2-1204(1205)
4 COG5161 SFT1 Pre-mRNA cleavage 100.0 3E-119 6E-124 1045.9 77.2 1226 1-1426 1-1314(1319)
5 PF10433 MMS1_N: Mono-function 100.0 3.6E-53 7.7E-58 529.0 43.8 452 131-712 1-501 (504)
6 PF03178 CPSF_A: CPSF A subuni 100.0 1.8E-51 3.8E-56 485.3 37.3 317 1062-1397 1-321 (321)
7 KOG0318 WD40 repeat stress pro 98.4 0.0057 1.2E-07 72.1 42.0 140 1107-1268 454-600 (603)
8 KOG2048 WD40 repeat protein [G 98.3 0.0067 1.4E-07 73.6 37.7 163 1080-1269 374-547 (691)
9 PRK11028 6-phosphogluconolacto 97.1 0.94 2E-05 53.8 33.4 162 1126-1299 147-327 (330)
10 cd00200 WD40 WD40 domain, foun 96.7 1.5 3.3E-05 49.1 31.7 137 1108-1267 147-288 (289)
11 PF03178 CPSF_A: CPSF A subuni 96.5 0.3 6.4E-06 58.0 22.9 144 1165-1339 43-202 (321)
12 KOG1274 WD40 repeat protein [G 96.5 0.34 7.5E-06 61.4 23.4 122 951-1136 138-263 (933)
13 KOG1273 WD40 repeat protein [G 96.5 0.12 2.6E-06 57.7 16.9 205 1107-1357 34-250 (405)
14 KOG1446 Histone H3 (Lys4) meth 96.4 2.3 5E-05 48.1 29.2 152 966-1185 150-307 (311)
15 cd00200 WD40 WD40 domain, foun 96.1 3.1 6.8E-05 46.6 31.2 140 1108-1270 105-249 (289)
16 PLN00181 protein SPA1-RELATED; 95.9 1.9 4.1E-05 57.9 27.9 144 1108-1269 630-792 (793)
17 KOG1539 WD repeat protein [Gen 95.9 0.76 1.6E-05 57.8 21.3 145 1128-1299 57-210 (910)
18 PRK11028 6-phosphogluconolacto 95.7 6.2 0.00013 46.8 30.8 255 969-1297 3-279 (330)
19 KOG1036 Mitotic spindle checkp 95.6 5.2 0.00011 45.3 26.2 145 970-1171 149-293 (323)
20 KOG1539 WD repeat protein [Gen 95.3 13 0.00028 47.5 43.9 159 1080-1270 434-606 (910)
21 KOG2055 WD40 repeat protein [G 95.2 3.4 7.4E-05 49.0 22.3 137 837-1021 224-364 (514)
22 KOG2106 Uncharacterized conser 94.9 12 0.00026 45.0 44.5 157 1088-1268 447-624 (626)
23 KOG0291 WD40-repeat-containing 94.7 17 0.00037 45.9 36.7 308 921-1268 25-378 (893)
24 KOG1036 Mitotic spindle checkp 94.5 11 0.00023 42.9 23.3 199 1108-1350 65-273 (323)
25 KOG0283 WD40 repeat-containing 93.9 1.9 4E-05 54.6 17.5 119 1078-1224 443-577 (712)
26 KOG0306 WD40-repeat-containing 93.7 26 0.00056 44.4 31.3 20 837-856 423-442 (888)
27 PF10282 Lactonase: Lactonase, 93.5 22 0.00047 42.7 33.3 160 1126-1296 165-342 (345)
28 PF08596 Lgl_C: Lethal giant l 93.5 15 0.00033 44.7 24.3 75 753-857 99-174 (395)
29 KOG2110 Uncharacterized conser 92.9 8.3 0.00018 44.7 19.1 168 1064-1270 69-248 (391)
30 PLN00181 protein SPA1-RELATED; 92.8 48 0.001 44.7 33.9 140 1108-1269 588-737 (793)
31 KOG0285 Pleiotropic regulator 92.6 18 0.00038 41.9 20.9 60 751-855 163-222 (460)
32 KOG0646 WD40 repeat protein [G 92.5 7 0.00015 46.6 18.3 149 1108-1268 135-305 (476)
33 KOG0306 WD40-repeat-containing 92.0 44 0.00096 42.5 43.6 207 1090-1357 414-637 (888)
34 KOG2321 WD40 repeat protein [G 92.0 2.4 5.3E-05 51.4 14.0 103 1164-1271 146-259 (703)
35 KOG0650 WD40 repeat nucleolar 91.4 2.8 6.2E-05 51.1 13.8 250 973-1268 419-678 (733)
36 KOG2111 Uncharacterized conser 91.2 8 0.00017 44.1 16.2 135 1126-1271 112-257 (346)
37 KOG0282 mRNA splicing factor [ 91.2 1.5 3.2E-05 52.2 11.0 212 1064-1335 281-501 (503)
38 KOG0319 WD40-repeat-containing 91.0 54 0.0012 41.6 33.5 178 1061-1271 258-443 (775)
39 KOG1273 WD40 repeat protein [G 90.9 7 0.00015 44.3 15.3 19 838-856 35-53 (405)
40 PTZ00420 coronin; Provisional 90.3 26 0.00056 44.7 21.9 153 1126-1297 147-312 (568)
41 KOG0294 WD40 repeat-containing 90.3 39 0.00085 38.7 23.2 197 1064-1299 108-305 (362)
42 KOG0278 Serine/threonine kinas 90.2 4.7 0.0001 44.2 12.8 135 1126-1275 164-302 (334)
43 KOG1897 Damage-specific DNA bi 89.9 80 0.0017 41.7 50.1 160 1166-1343 501-671 (1096)
44 KOG0315 G-protein beta subunit 89.7 37 0.00081 37.6 21.7 143 1106-1267 134-285 (311)
45 KOG2055 WD40 repeat protein [G 89.5 55 0.0012 39.4 22.7 54 657-714 212-267 (514)
46 KOG4378 Nuclear protein COP1 [ 89.0 4.6 0.0001 48.2 12.6 116 1125-1247 185-302 (673)
47 KOG0283 WD40 repeat-containing 88.1 7.9 0.00017 49.3 14.7 162 1085-1274 406-580 (712)
48 PF08596 Lgl_C: Lethal giant l 88.1 6.5 0.00014 47.8 13.9 100 1089-1200 136-260 (395)
49 PF14783 BBS2_Mid: Ciliary BBS 88.0 19 0.00041 35.2 14.1 88 627-765 23-110 (111)
50 PF14727 PHTB1_N: PTHB1 N-term 87.6 79 0.0017 38.7 29.8 74 57-148 90-163 (418)
51 KOG2096 WD40 repeat protein [G 87.2 59 0.0013 37.3 19.1 97 1169-1269 205-307 (420)
52 KOG0315 G-protein beta subunit 86.8 28 0.0006 38.6 15.9 158 1107-1289 51-212 (311)
53 COG2706 3-carboxymuconate cycl 86.4 74 0.0016 37.3 31.7 70 1108-1189 255-331 (346)
54 KOG0319 WD40-repeat-containing 86.1 1.1E+02 0.0024 39.0 35.4 73 1086-1182 321-396 (775)
55 KOG0277 Peroxisomal targeting 85.7 65 0.0014 36.0 18.2 69 1108-1183 21-93 (311)
56 KOG0299 U3 snoRNP-associated p 85.7 5.5 0.00012 47.3 10.8 135 1108-1269 214-355 (479)
57 KOG0772 Uncharacterized conser 85.7 10 0.00022 45.7 13.0 178 1126-1339 290-487 (641)
58 KOG0296 Angio-associated migra 85.4 14 0.00029 43.0 13.4 127 1128-1268 87-218 (399)
59 KOG0266 WD40 repeat-containing 85.3 58 0.0013 40.6 20.8 134 1125-1269 223-363 (456)
60 KOG0647 mRNA export protein (c 85.3 34 0.00074 39.0 16.0 136 1125-1274 92-232 (347)
61 KOG0290 Conserved WD40 repeat- 85.0 15 0.00032 41.4 13.1 151 1106-1269 57-226 (364)
62 KOG3881 Uncharacterized conser 84.5 11 0.00025 44.0 12.4 131 1153-1297 104-252 (412)
63 COG2706 3-carboxymuconate cycl 84.3 92 0.002 36.5 28.0 151 1127-1290 167-335 (346)
64 KOG0296 Angio-associated migra 83.7 97 0.0021 36.3 27.1 84 1108-1209 298-384 (399)
65 KOG1517 Guanine nucleotide bin 83.5 1.5E+02 0.0032 39.6 22.4 187 1088-1299 1109-1312(1387)
66 KOG2106 Uncharacterized conser 83.3 88 0.0019 38.1 19.1 122 1159-1297 375-497 (626)
67 KOG0282 mRNA splicing factor [ 80.8 31 0.00068 41.5 14.4 225 965-1267 269-502 (503)
68 PTZ00420 coronin; Provisional 80.6 1.1E+02 0.0025 39.0 20.6 39 975-1019 147-185 (568)
69 KOG0772 Uncharacterized conser 80.6 29 0.00063 42.1 14.0 148 1108-1273 329-489 (641)
70 PF14727 PHTB1_N: PTHB1 N-term 80.5 1.5E+02 0.0033 36.4 24.3 189 1092-1301 23-248 (418)
71 PF08450 SGL: SMP-30/Gluconola 80.2 78 0.0017 35.6 17.7 114 1151-1270 37-164 (246)
72 KOG0289 mRNA splicing factor [ 79.3 1.5E+02 0.0033 35.6 25.6 130 1125-1267 367-503 (506)
73 KOG0318 WD40 repeat stress pro 78.9 73 0.0016 39.0 16.6 146 576-773 375-521 (603)
74 KOG0279 G protein beta subunit 78.5 1.2E+02 0.0027 34.3 17.1 158 1149-1343 62-225 (315)
75 KOG1034 Transcriptional repres 78.4 32 0.00068 39.6 12.8 142 1107-1269 104-277 (385)
76 TIGR03866 PQQ_ABC_repeats PQQ- 78.0 1.3E+02 0.0028 34.2 34.0 99 1164-1269 167-278 (300)
77 PF00780 CNH: CNH domain; Int 78.0 61 0.0013 37.1 16.2 141 1107-1270 6-165 (275)
78 KOG1274 WD40 repeat protein [G 77.4 41 0.00089 43.7 14.9 134 1125-1270 33-168 (933)
79 PTZ00421 coronin; Provisional 77.0 1.4E+02 0.003 37.7 19.8 145 1109-1269 89-244 (493)
80 KOG4441 Proteins containing BT 76.9 39 0.00085 43.4 15.2 171 1063-1259 349-531 (571)
81 KOG0649 WD40 repeat protein [G 76.9 60 0.0013 35.9 13.9 146 1106-1269 20-185 (325)
82 KOG1587 Cytoplasmic dynein int 76.8 20 0.00044 45.3 12.2 148 1108-1271 360-517 (555)
83 KOG0289 mRNA splicing factor [ 76.3 1.6E+02 0.0035 35.4 18.0 91 1064-1182 370-461 (506)
84 PHA02713 hypothetical protein; 76.0 51 0.0011 42.3 16.0 97 1174-1273 368-489 (557)
85 KOG0278 Serine/threonine kinas 75.3 69 0.0015 35.6 13.9 91 1063-1182 205-298 (334)
86 PHA03098 kelch-like protein; P 75.1 49 0.0011 42.2 15.7 98 1160-1260 385-497 (534)
87 KOG0266 WD40 repeat-containing 74.6 1.5E+02 0.0033 37.0 19.4 136 1125-1271 179-319 (456)
88 KOG0771 Prolactin regulatory e 74.2 19 0.00041 42.6 10.1 72 1197-1270 283-356 (398)
89 PF04053 Coatomer_WDAD: Coatom 71.7 2.6E+02 0.0057 34.7 21.9 211 924-1223 45-262 (443)
90 KOG3881 Uncharacterized conser 71.6 13 0.00028 43.5 7.9 104 1063-1193 226-332 (412)
91 KOG0294 WD40 repeat-containing 71.0 33 0.0007 39.3 10.6 81 658-777 43-123 (362)
92 PF08662 eIF2A: Eukaryotic tra 70.9 1.3E+02 0.0028 32.7 15.5 129 993-1190 49-188 (194)
93 KOG1408 WD40 repeat protein [F 69.9 54 0.0012 41.4 12.9 99 1107-1223 470-579 (1080)
94 KOG0647 mRNA export protein (c 69.6 49 0.0011 37.8 11.5 128 1126-1269 49-183 (347)
95 KOG0310 Conserved WD40 repeat- 69.4 2.7E+02 0.0059 34.0 24.3 129 1125-1268 174-307 (487)
96 KOG2445 Nuclear pore complex c 69.4 56 0.0012 37.4 11.9 97 1075-1183 150-258 (361)
97 KOG2114 Vacuolar assembly/sort 69.2 3.7E+02 0.008 35.4 21.5 24 660-683 27-50 (933)
98 KOG0299 U3 snoRNP-associated p 69.1 97 0.0021 37.4 14.3 154 1126-1298 265-432 (479)
99 TIGR03866 PQQ_ABC_repeats PQQ- 68.9 2.1E+02 0.0045 32.5 30.7 38 975-1018 10-47 (300)
100 COG5161 SFT1 Pre-mRNA cleavage 68.5 3 6.4E-05 52.8 2.2 91 100-207 88-178 (1319)
101 PF14783 BBS2_Mid: Ciliary BBS 68.2 1.1E+02 0.0024 30.1 12.2 69 1091-1182 2-72 (111)
102 PF15390 DUF4613: Domain of un 67.9 33 0.00071 42.7 10.5 90 1106-1211 122-219 (671)
103 PF11768 DUF3312: Protein of u 67.6 1.3E+02 0.0028 37.7 15.5 131 1126-1269 183-328 (545)
104 KOG0279 G protein beta subunit 67.1 2.3E+02 0.005 32.3 16.1 154 1088-1269 148-312 (315)
105 KOG4441 Proteins containing BT 66.9 1.1E+02 0.0024 39.3 15.9 188 1064-1273 302-500 (571)
106 PF10282 Lactonase: Lactonase, 66.7 2.8E+02 0.0061 33.1 39.7 150 1077-1246 180-345 (345)
107 PF14781 BBS2_N: Ciliary BBSom 65.9 22 0.00047 36.0 7.2 53 1088-1161 47-99 (136)
108 KOG0316 Conserved WD40 repeat- 65.7 99 0.0021 34.2 12.4 132 1164-1333 71-207 (307)
109 KOG0274 Cdc4 and related F-box 64.0 76 0.0017 40.3 13.4 140 1108-1271 341-483 (537)
110 KOG4378 Nuclear protein COP1 [ 64.0 3.4E+02 0.0073 33.3 17.3 54 964-1021 130-184 (673)
111 KOG2919 Guanine nucleotide-bin 63.0 3E+02 0.0064 32.1 16.3 160 1088-1270 155-327 (406)
112 PTZ00421 coronin; Provisional 62.2 1.1E+02 0.0024 38.6 14.4 113 1152-1269 73-197 (493)
113 KOG0646 WD40 repeat protein [G 61.7 14 0.0003 44.2 5.8 97 1165-1269 51-152 (476)
114 KOG0291 WD40-repeat-containing 61.7 4.7E+02 0.01 33.9 45.6 57 376-438 69-125 (893)
115 PHA02713 hypothetical protein; 61.5 1.3E+02 0.0028 38.7 15.1 96 1174-1273 433-534 (557)
116 KOG2110 Uncharacterized conser 60.7 3.5E+02 0.0075 32.1 19.7 146 1146-1304 79-228 (391)
117 PF00780 CNH: CNH domain; Int 59.8 3.1E+02 0.0067 31.2 26.8 50 967-1020 105-155 (275)
118 PHA03098 kelch-like protein; P 59.5 82 0.0018 40.2 13.0 111 1160-1273 338-465 (534)
119 KOG0271 Notchless-like WD40 re 59.4 2.2E+02 0.0047 33.8 14.4 109 1154-1269 115-234 (480)
120 PF08662 eIF2A: Eukaryotic tra 58.2 2.8E+02 0.006 30.2 17.6 136 1109-1259 18-162 (194)
121 KOG0650 WD40 repeat nucleolar 56.5 1.9E+02 0.0041 36.2 14.0 27 751-777 412-438 (733)
122 KOG1408 WD40 repeat protein [F 56.3 1.2E+02 0.0026 38.5 12.4 161 1089-1270 545-713 (1080)
123 KOG2321 WD40 repeat protein [G 56.2 2.5E+02 0.0055 35.0 14.9 71 751-855 187-257 (703)
124 KOG0640 mRNA cleavage stimulat 56.0 1.5E+02 0.0033 33.9 12.2 201 1002-1273 217-430 (430)
125 KOG0321 WD40 repeat-containing 55.6 92 0.002 39.1 11.3 72 1107-1188 63-137 (720)
126 KOG0316 Conserved WD40 repeat- 55.5 3.4E+02 0.0073 30.3 21.7 133 1125-1270 163-300 (307)
127 PLN02153 epithiospecifier prot 54.7 3.3E+02 0.0072 32.3 16.4 90 1173-1262 217-326 (341)
128 KOG0275 Conserved WD40 repeat- 54.0 50 0.0011 37.6 8.1 162 1082-1268 207-376 (508)
129 KOG1188 WD40 repeat protein [G 54.0 1.9E+02 0.0041 33.8 12.7 147 1108-1275 40-201 (376)
130 PF13360 PQQ_2: PQQ-like domai 53.6 3.4E+02 0.0074 29.8 19.7 171 1063-1267 3-188 (238)
131 KOG0275 Conserved WD40 repeat- 52.2 66 0.0014 36.7 8.7 212 1107-1371 274-492 (508)
132 PF14761 HPS3_N: Hermansky-Pud 51.9 57 0.0012 35.8 8.1 64 1150-1213 130-205 (215)
133 KOG0292 Vesicle coat complex C 51.6 1.1E+02 0.0024 39.9 11.4 131 1106-1269 19-164 (1202)
134 KOG3621 WD40 repeat-containing 51.6 51 0.0011 41.8 8.5 112 1158-1271 39-155 (726)
135 KOG0274 Cdc4 and related F-box 51.5 4.2E+02 0.0092 33.8 17.0 134 1108-1269 261-399 (537)
136 KOG0273 Beta-transducin family 50.7 1.1E+02 0.0023 37.2 10.5 114 1154-1275 235-352 (524)
137 PHA02790 Kelch-like protein; P 50.5 3E+02 0.0065 34.7 15.6 93 1173-1273 376-471 (480)
138 KOG0305 Anaphase promoting com 50.2 1.4E+02 0.003 37.2 12.0 141 1108-1272 313-463 (484)
139 KOG0270 WD40 repeat-containing 48.9 5.7E+02 0.012 31.1 18.4 104 1065-1182 154-275 (463)
140 KOG2394 WD40 protein DMR-N9 [G 48.8 36 0.00078 41.6 6.4 87 1155-1246 291-382 (636)
141 KOG1446 Histone H3 (Lys4) meth 48.7 4.9E+02 0.011 30.2 16.0 153 1156-1337 102-260 (311)
142 KOG1332 Vesicle coat complex C 48.7 1.1E+02 0.0024 34.1 9.4 96 1125-1225 31-136 (299)
143 KOG3621 WD40 repeat-containing 47.8 65 0.0014 40.9 8.6 126 1088-1236 75-208 (726)
144 TIGR03300 assembly_YfgL outer 45.5 6.1E+02 0.013 30.4 18.4 95 1164-1268 241-336 (377)
145 KOG0263 Transcription initiati 45.4 78 0.0017 40.5 8.9 117 611-770 529-650 (707)
146 PRK01742 tolB translocation pr 43.6 2.6E+02 0.0055 34.6 13.4 95 1173-1271 228-323 (429)
147 cd00216 PQQ_DH Dehydrogenases 43.3 5.2E+02 0.011 32.6 16.2 62 1199-1263 400-461 (488)
148 PF00325 Crp: Bacterial regula 42.2 36 0.00079 25.4 3.3 25 1402-1426 4-28 (32)
149 KOG1896 mRNA cleavage and poly 41.6 2.3E+02 0.005 38.5 12.4 92 1128-1225 1117-1215(1366)
150 TIGR03548 mutarot_permut cycli 41.5 5.1E+02 0.011 30.5 15.0 177 1076-1275 52-282 (323)
151 KOG0293 WD40 repeat-containing 41.4 7.1E+02 0.015 30.0 15.3 109 1157-1269 357-469 (519)
152 KOG0303 Actin-binding protein 40.8 2.9E+02 0.0063 33.0 11.8 165 1153-1341 80-272 (472)
153 TIGR03300 assembly_YfgL outer 40.8 4E+02 0.0087 32.0 14.3 125 1126-1268 250-377 (377)
154 PF14761 HPS3_N: Hermansky-Pud 40.6 5.5E+02 0.012 28.5 16.9 84 1080-1181 126-214 (215)
155 PF14779 BBS1: Ciliary BBSome 39.8 1.3E+02 0.0027 34.3 8.7 75 1085-1177 173-254 (257)
156 COG4247 Phy 3-phytase (myo-ino 39.2 5.9E+02 0.013 28.7 13.2 128 606-770 52-187 (364)
157 KOG1407 WD40 repeat protein [F 38.9 4.1E+02 0.0089 30.1 12.0 101 1164-1271 77-178 (313)
158 KOG0263 Transcription initiati 37.8 1.4E+02 0.0031 38.3 9.5 99 1107-1222 546-648 (707)
159 KOG0308 Conserved WD40 repeat- 37.7 3.5E+02 0.0076 34.4 12.4 137 1126-1268 139-283 (735)
160 KOG2079 Vacuolar assembly/sort 35.6 99 0.0021 41.3 7.8 101 1108-1224 99-206 (1206)
161 PF14781 BBS2_N: Ciliary BBSom 34.5 3.5E+02 0.0075 27.6 9.8 69 1106-1183 8-83 (136)
162 KOG4328 WD40 protein [Function 34.2 1.1E+02 0.0024 36.9 7.3 89 1237-1350 185-275 (498)
163 PF08728 CRT10: CRT10; InterP 34.0 1.1E+02 0.0024 39.8 7.9 65 1205-1269 177-245 (717)
164 PLN02153 epithiospecifier prot 33.8 8.6E+02 0.019 28.8 17.2 84 1174-1259 160-260 (341)
165 KOG1275 PAB-dependent poly(A) 33.8 1.9E+02 0.004 38.1 9.6 133 1107-1268 186-340 (1118)
166 KOG0643 Translation initiation 33.6 7.7E+02 0.017 28.2 17.4 184 1093-1330 54-253 (327)
167 KOG0305 Anaphase promoting com 33.6 5.2E+02 0.011 32.3 13.3 139 1109-1269 189-330 (484)
168 PF12341 DUF3639: Protein of u 33.6 67 0.0014 23.1 3.3 15 753-767 13-27 (27)
169 KOG0268 Sof1-like rRNA process 33.4 2.3E+02 0.0051 33.3 9.5 126 1125-1268 208-343 (433)
170 COG5276 Uncharacterized conser 32.9 8.4E+02 0.018 28.3 16.1 148 1129-1291 63-213 (370)
171 PF13360 PQQ_2: PQQ-like domai 32.2 7E+02 0.015 27.2 14.1 98 1163-1268 35-138 (238)
172 KOG0276 Vesicle coat complex C 32.1 1.2E+03 0.026 29.9 20.2 156 1125-1294 33-198 (794)
173 TIGR02276 beta_rpt_yvtn 40-res 31.7 1E+02 0.0022 23.7 4.7 37 968-1010 4-42 (42)
174 KOG0288 WD40 repeat protein Ti 31.1 5.7E+02 0.012 30.8 12.2 128 1127-1266 322-457 (459)
175 KOG0288 WD40 repeat protein Ti 30.8 1.3E+02 0.0029 35.8 7.1 90 1065-1178 365-458 (459)
176 KOG1587 Cytoplasmic dynein int 30.5 1.3E+03 0.027 29.7 16.7 84 1081-1181 235-323 (555)
177 KOG0295 WD40 repeat-containing 30.0 1E+03 0.022 28.4 17.0 68 669-777 305-372 (406)
178 KOG0276 Vesicle coat complex C 29.8 1.3E+03 0.028 29.6 39.1 62 1159-1224 429-491 (794)
179 PF06977 SdiA-regulated: SdiA- 29.2 94 0.002 35.3 5.7 59 376-438 185-248 (248)
180 PRK11138 outer membrane biogen 29.1 8.7E+02 0.019 29.4 14.7 99 1163-1269 293-393 (394)
181 KOG0280 Uncharacterized conser 28.8 9.7E+02 0.021 27.8 13.1 93 1173-1267 46-148 (339)
182 KOG4649 PQQ (pyrrolo-quinoline 28.7 5E+02 0.011 29.5 10.6 73 361-439 52-124 (354)
183 KOG2048 WD40 repeat protein [G 28.6 1.4E+03 0.03 29.5 24.9 166 1065-1268 49-231 (691)
184 PRK03629 tolB translocation pr 27.7 6.2E+02 0.014 31.2 13.2 95 1173-1271 223-318 (429)
185 PRK11138 outer membrane biogen 27.0 1.2E+03 0.026 28.2 18.3 135 1164-1337 256-392 (394)
186 KOG0285 Pleiotropic regulator 26.5 5.1E+02 0.011 30.6 10.6 136 1126-1273 298-442 (460)
187 PRK04922 tolB translocation pr 26.1 6.4E+02 0.014 31.1 12.9 94 1173-1270 228-322 (433)
188 KOG1900 Nuclear pore complex, 26.1 3.7E+02 0.0081 37.1 10.8 109 1164-1280 90-215 (1311)
189 KOG3914 WD repeat protein WDR4 25.7 8.6E+02 0.019 29.2 12.5 147 1103-1269 69-222 (390)
190 PRK02889 tolB translocation pr 25.4 5.3E+02 0.011 31.8 11.9 95 1173-1271 220-315 (427)
191 KOG0308 Conserved WD40 repeat- 25.3 1.5E+03 0.034 29.0 15.1 154 1153-1339 116-284 (735)
192 KOG4328 WD40 protein [Function 25.2 3.7E+02 0.0081 32.7 9.5 113 1153-1270 185-309 (498)
193 KOG0301 Phospholipase A2-activ 24.9 7.8E+02 0.017 31.7 12.5 108 1153-1272 178-290 (745)
194 KOG0273 Beta-transducin family 24.6 1.4E+03 0.03 28.2 26.2 89 1125-1222 430-522 (524)
195 KOG0269 WD40 repeat-containing 24.5 3.2E+02 0.007 35.4 9.3 56 1125-1186 197-255 (839)
196 KOG0645 WD40 repeat protein [G 24.1 1.1E+03 0.024 27.0 27.5 261 975-1335 36-307 (312)
197 PF13404 HTH_AsnC-type: AsnC-t 24.0 79 0.0017 25.2 2.7 38 1388-1425 5-42 (42)
198 KOG1898 Splicing factor 3b, su 24.0 2E+03 0.043 29.9 29.4 100 1110-1225 947-1050(1205)
199 KOG0280 Uncharacterized conser 23.9 7.2E+02 0.016 28.8 11.0 153 1109-1269 25-195 (339)
200 PRK04792 tolB translocation pr 23.7 1.2E+03 0.026 29.0 14.6 94 1174-1271 287-381 (448)
201 PF05694 SBP56: 56kDa selenium 23.7 1.1E+03 0.024 29.1 13.2 117 1171-1297 220-362 (461)
202 PRK05137 tolB translocation pr 23.1 9.5E+02 0.021 29.6 13.6 92 1173-1268 226-320 (435)
203 PF06977 SdiA-regulated: SdiA- 23.1 6.8E+02 0.015 28.5 11.1 92 924-1020 34-136 (248)
204 PF02333 Phytase: Phytase; In 22.4 1.4E+03 0.031 27.6 17.7 119 1173-1297 78-213 (381)
205 COG3204 Uncharacterized protei 22.3 4.9E+02 0.011 30.2 9.4 96 924-1028 98-204 (316)
206 PF14655 RAB3GAP2_N: Rab3 GTPa 22.3 2.8E+02 0.0061 34.0 8.3 44 1083-1135 51-97 (415)
207 KOG2096 WD40 repeat protein [G 22.3 1.3E+03 0.028 27.0 19.6 61 958-1020 284-350 (420)
208 KOG4547 WD40 repeat-containing 22.1 1.7E+03 0.036 28.2 14.9 136 1107-1262 69-211 (541)
209 PHA02790 Kelch-like protein; P 21.6 5.1E+02 0.011 32.6 10.8 97 1174-1273 288-385 (480)
210 PRK04792 tolB translocation pr 21.5 6.7E+02 0.015 31.2 11.8 94 1174-1271 243-337 (448)
211 KOG0974 WD-repeat protein WDR6 20.9 2.6E+02 0.0057 37.3 7.9 106 1155-1267 8-114 (967)
212 KOG0641 WD40 repeat protein [G 20.8 1.6E+02 0.0035 32.0 5.1 103 131-256 45-149 (350)
213 PRK00178 tolB translocation pr 20.8 9.5E+02 0.021 29.4 13.0 94 1173-1270 223-317 (430)
214 KOG1063 RNA polymerase II elon 20.8 1.3E+03 0.028 29.8 13.3 183 1063-1273 34-227 (764)
215 PF12894 Apc4_WD40: Anaphase-p 20.6 1.7E+02 0.0037 24.0 4.1 40 101-148 2-41 (47)
216 PF12234 Rav1p_C: RAVE protein 20.6 8.1E+02 0.017 31.9 12.0 84 1082-1180 66-155 (631)
217 KOG1354 Serine/threonine prote 20.0 6.7E+02 0.015 29.6 9.9 149 1107-1269 36-243 (433)
No 1
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=8.7e-196 Score=1751.80 Aligned_cols=1286 Identities=41% Similarity=0.683 Sum_probs=1066.2
Q ss_pred ccceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCccc
Q 000548 2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES 81 (1431)
Q Consensus 2 ~~~~~~~~~~pT~V~~s~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~Leiy~v~~~~~g~~~~ 81 (1431)
.|++|++.|+||+|+||++|+||..... ||||+++|.|+||++..++++.+.
T Consensus 1 m~~vykq~h~~T~ve~s~ag~Ft~~~~~---------------------------nlvV~~~N~L~vyri~~~~e~~t~- 52 (1366)
T KOG1896|consen 1 MFAVYKQEHDPTVVENSSAGLFTNNRTE---------------------------NLVVAGTNILRVYRISRDAEALTK- 52 (1366)
T ss_pred CcchhhhccCchhhccceeeeEecCCCc---------------------------ceEEecccEEEEEEeccchhhccc-
Confidence 3789999999999999999999987765 999999999999999865333211
Q ss_pred cCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEeeee
Q 000548 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~~klsil~~d~~~~~l~t~Slh~ 161 (1431)
.+...|+...+.+|+|+++|.+||+|++|++++..|+ .+|+|+++|++||+|+|+||+.+|+|+|.||||
T Consensus 53 ------~~~~~~~~~~~~~LeLv~~~~l~GnV~si~~~~~~gs----~rD~LlL~f~~AKiSvlefD~~t~sl~TlSLHy 122 (1366)
T KOG1896|consen 53 ------NDPGDMGKAHRKKLELVAEFKLFGNVTSIAKLPLKGS----NRDALLLLFKDAKISVLEFDPQTNSLRTLSLHY 122 (1366)
T ss_pred ------cCccccccccceEEEEEEEEEeecceeeEEEeecCCC----CcceEEEEeccceEEEEEecCCccceeeeeeEE
Confidence 1223344455567999999999999999999999987 699999999999999999999999999999999
Q ss_pred ecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCCCCCCCCCCCCCCCCCcccceeccEEEEcccC
Q 000548 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1431)
Q Consensus 162 ~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~~~~~L~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~l 241 (1431)
||.+++ +.|+.....+|.++|||++||++|++|+..|+||||++.. .+++++ ....++-..+++.+||+|.+++|
T Consensus 123 fE~~~~---~~~~~~~~~~p~vrvDPdsrCa~llvyg~~m~iLpf~~~e-~~~~~~-~~~~~~~~ss~~~pSyvi~~reL 197 (1366)
T KOG1896|consen 123 FEGPEF---RKGLVGRAKIPTVRVDPDSRCALLLVYGLRMAILPFRVNE-HLDDEE-LFPSGFSKSSFTAPSYVIALREL 197 (1366)
T ss_pred eccccc---cccccccccCceEEECCCCCeEEEEEecceEEEeeccccc-cccccc-cccccccccccccceeEEEhhhh
Confidence 999864 4555555678999999999999999999999999998752 333322 22222233457899999999999
Q ss_pred C--CCceeeEeeccCCCcceEEEEeecCCCcccccccccceeEEEEEEEeecccccceeeEeccCCcccceEEEecCCCC
Q 000548 242 D--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSPIG 319 (1431)
Q Consensus 242 d--i~~V~D~~FL~gy~~PtlavL~~~~~tw~gr~~~~~~t~~~~~~sLd~~~k~~~~i~s~~~lp~~~~~LipvP~p~g 319 (1431)
| |+||+|++|||||++||||||||+.+||+||+..|+|||.+.+++||+++|.||+||++.+||+||+.+.++|.|+|
T Consensus 198 deki~niiD~qFLhgY~ePTl~ILyep~~tw~grv~~r~dt~~~vaisLni~q~~hpVI~sv~sLP~D~~~~~~vp~piG 277 (1366)
T KOG1896|consen 198 DEKIKNIIDFQFLHGYYEPTLAILYEPEQTWAGRVILRKDTCVLVAISLNITQKVHPVIWSVLSLPFDCYQATAVPTPIG 277 (1366)
T ss_pred hhhhccceeEEeecCcccceEEEEecccccccceEEEecCcEEEEEEEcCccccccceEeeeccCChhhhhceeecccCc
Confidence 8 88999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCeEEEEecCC-cceEEccCCCccCCCCcccCCCCceeeecceeEEEeeCceEEEEeCCCCEEEEEEEEc-Cee
Q 000548 320 GVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYD-GRV 397 (1431)
Q Consensus 320 GvLVi~~n~I~y~~~~~-~~~~~~n~~~~~~~~~~~~p~~~~~~~ld~~~~~~~~~~~~Ll~~~~G~l~~l~l~~d-g~~ 397 (1431)
||||++.|.++|.+|++ ++++++|++++..+.++.+||+.+.+.+|++..+|++.++++++..+||+|+|+|.+| +|.
T Consensus 278 gvLv~~~n~~iy~nqsv~~~gv~LNs~a~~~t~fpl~~qs~v~i~ld~a~~t~i~~dk~vis~~~Gd~y~Ltl~~D~~r~ 357 (1366)
T KOG1896|consen 278 GVLVFTVNNLIYLNQSVSPYGVALNSYASKYTAFPLIPQSGVRIELDCANATWISNDKCVISLKNGDLYLLTLILDIGRS 357 (1366)
T ss_pred cEEEEeeeeEEEEccCCCceeEEecchhhcccCCccccccceEEEEeeccceeecCCeEEEecCCCcEEEEEEEeccccc
Confidence 99999999999999998 5999999999999999999999999999999999999999999999999999999999 789
Q ss_pred eeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEeeCCCccccCCCCccccCCcccCCccchhccCCCcchhhc
Q 000548 398 VQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQD 477 (1431)
Q Consensus 398 V~~l~l~~~~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 477 (1431)
|+.+++..+....+++|++...+++||+||+.|||+|++|.+....+.+. ...++.+.+....+.++.+...+..+|+
T Consensus 358 V~~~~f~k~~asvl~t~~v~~~n~llFlGSrlgnSlll~~s~~~~~~~e~--~~re~~d~~~~~~~~~~~d~~~d~~~~d 435 (1366)
T KOG1896|consen 358 VQLLHFDKFKASVLATSIVGHGNNLLFLGSRLGNSLLLRFSELLQRASEG--VRREEGDTESDGYSKKRVDDTQDVRRDD 435 (1366)
T ss_pred hhhhhhhhhhcccceeeeeccCCccEEEEecCCCEEEEEehhccccCCcc--ccccccCCcCCcchhhcccchhhhhhhh
Confidence 99999999999999999999999999999999999999999876522221 1111111222123333332111111111
Q ss_pred ccCcccc------cccCCCCCCcccccceeEEEEeeeecccCCccccccccccccCC---------------CccCCCCC
Q 000548 478 MVNGEEL------SLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA---------------SATGISKQ 536 (1431)
Q Consensus 478 ~~~~~~~------~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~D~~vg~~~~~d~---------------~~sG~g~~ 536 (1431)
. ..++. +-||++...+ ...+.|++||+|+|+|||.||++|.....+. .|+|+|+.
T Consensus 436 ~-~~~~~~~~g~~~~~g~~a~~t---~~~f~fevcDsL~NIGPi~~~avG~~~~~~~~~~gl~~~~~~~elV~~sGhgkn 511 (1366)
T KOG1896|consen 436 E-KSAELFEAGSEENYGSGAQET---VQPFSFEVCDSLPNIGPITDFAVGKRSSASEAVEGLSPHNKCLELVATSGHGKN 511 (1366)
T ss_pred h-hccchhhccccccCCccccee---eeeeEEeehhccccccccccceeccccchhhhccCCCCCCCeEEEEEeccCCCC
Confidence 1 11111 2232221111 1238899999999999999999998754321 18899999
Q ss_pred CCeEE------------EecCCCCEEEEEEecCCCCCCCCcccccccCcCcceEEEEEccccceEEEeccceeeeecccc
Q 000548 537 SNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVD 604 (1431)
Q Consensus 537 g~L~~------------~~L~g~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eev~~~~g 604 (1431)
|.|.+ ++|+||.++|||..+....+ .++..|.||++|..++|+||++|+++.|++. .+
T Consensus 512 gaL~V~r~sI~P~i~t~fel~Gc~~iWtV~~~~~~~~---------~~~~~h~~lilS~e~~t~il~tge~~~Ev~~-s~ 581 (1366)
T KOG1896|consen 512 GALSVIRRSIRPEIATEFELPGCVDIWTVFIKGRKRE---------EDNTQHLYLILSTESRTMILETGEELLEVSG-SG 581 (1366)
T ss_pred cceEEEeecccceeeEEEEecCeeeEEEEEEeccccc---------cccCcceEEEeecccchhhhhccchhhhccc-ce
Confidence 99987 68999999999998644322 2234599999999999999999999999975 58
Q ss_pred cccccceEEEeeecCCcEEEEEecCcEEEEcCC-cceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEE
Q 000548 605 YFVQGRTIAAGNLFGRRRVIQVFERGARILDGS-YMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLL 683 (1431)
Q Consensus 605 F~~~~~TI~~g~l~~~~~ivQVt~~~irl~~~~-~~~~~~~~~~~~~~~~~~~~~~~I~~as~~d~~vll~~~~g~i~~l 683 (1431)
|..+++||++|+++++.+||||||+++|+++++ .+.|.++.. .+..+++++++||||++....|.+.+|
T Consensus 582 f~~~~~Tl~~gnlg~~rriVQVtp~~~rllDg~~r~lq~i~fd----------~~~~vv~~sv~dpyv~v~~~~g~i~~~ 651 (1366)
T KOG1896|consen 582 FTRDGPTLFAGNLGNERRIVQVTPSGLRLLDGDLRMLQRIPFD----------SGAIVVQTSVADPYVAVRSSEGRITLY 651 (1366)
T ss_pred eEeccceEEEEecCCceEEEEEccceeEEecCcchheeEeccc----------cCCcEEEEeccCceEEEEEcCCceEEE
Confidence 999999999999988899999999999999995 588888883 445699999999999999999999999
Q ss_pred EecCCCceEEeecCcccccCCCceEEEEeeccCCC-------------CcccccccccccccCCccccccCCCCCCCCCC
Q 000548 684 VGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGP-------------EPWLRKTSTDAWLSTGVGEAIDGADGGPLDQG 750 (1431)
Q Consensus 684 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (1431)
.++....+|.+.++ + ...+.+++++.|.+. .++.+.. .++...... .+.+.+++....+.
T Consensus 652 ~l~~~s~rl~~~~~--~---s~~~~sv~~~~dlsg~f~~~s~l~~k~~~~~gr~~-~~~~~~~~~-~kv~~~egg~~~~~ 724 (1366)
T KOG1896|consen 652 DLEEKSHRLALHDP--M---SFKVVSVSLPADLSGMFTTLSDLSLKGNEANGRSS-EAEGLQSLP-CKVDDEEGGSPEQE 724 (1366)
T ss_pred EeccccchhhccCc--c---cceeEEEechhhhccceEEEeeecccCcccccccc-cccccccCC-ccccCCCCCCcccC
Confidence 98776555655554 1 344666666666432 2222221 111111111 22332332111122
Q ss_pred cEEEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEee
Q 000548 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ 830 (1431)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 830 (1431)
.+||++++++|+++||++|++++|+.++.|+.++.+|.+....... .| + ..++..++++..+
T Consensus 725 ~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L~~~~~~~~~---~~--------------~-~s~~~~l~q~~~~ 786 (1366)
T KOG1896|consen 725 PYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVLMDSRLRGPT---TN--------------K-ESEDLELKQLFVN 786 (1366)
T ss_pred ceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceEEeecccCcc---cc--------------c-cccchHHHHhhcc
Confidence 3999999999999999999999999999999999998875443220 00 1 1223567777778
Q ss_pred eccCC--CCccEEEEEeeCCeEEEEEeeecCCCCCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCC----
Q 000548 831 RWSAH--HSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREE---- 904 (1431)
Q Consensus 831 ~~g~~--~~~~~L~vgl~~G~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rf~k~~~~~~~~~~---- 904 (1431)
.+|.+ .++|||++-+.+|+++.|++|+..+ ++...++|+|+|+.....+.
T Consensus 787 ~L~~e~~~~e~~L~lv~~~~eil~Ykaf~~~~------------------------~~~~~~~f~kvp~~~~~~~~~p~~ 842 (1366)
T KOG1896|consen 787 PLGSEIVFKEPHLFLVVSDNEILIYKAFPQLS------------------------QGNLKVFFKKVPHNLNIRTDKPHF 842 (1366)
T ss_pred ccchhhhccCCceEEEEeCceEEEEeeccccC------------------------ccchhhhhhhCCHhhcccccCCcc
Confidence 88877 7899999999999999999985111 01124589999875422111
Q ss_pred -------------CCCCCCccceEEeeccCCceEEEEeCCCceEEEEe-CCceEEeeccCCCceEEEeeccCCCCCceEE
Q 000548 905 -------------TPHGAPCQRITIFKNISGHQGFFLSGSRPCWCMVF-RERLRVHPQLCDGSIVAFTVLHNVNCNHGFI 970 (1431)
Q Consensus 905 -------------~~~~~g~~~l~~f~~~~g~~~Vf~~g~rP~~i~~~-~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i 970 (1431)
.+.+.-.++++.|++++|++|||+||++|+||+.. ++.+++||+..+++|.+|++||+.|||+||+
T Consensus 843 ~~~~~~~~~~e~~~~~~~~~~~m~~f~~i~ghsgvfv~Gs~P~~il~t~rg~lr~h~~~gngpv~sfapfhnvn~p~gfi 922 (1366)
T KOG1896|consen 843 LCKKREGGGAEEGASVSVIVQRMTYFEDIGGHSGVFVTGSKPYLILLTFRGVLRFHPVFGNGPVGSFAPFHNVNCPRGFI 922 (1366)
T ss_pred cchhhccccccccccccceeeeEEeeccccCeeEEEEecCCceEEEEEcccccceeeeecCCcceeeeeeeccCCCcceE
Confidence 11123346788999999999999999999999874 9999999999999999999999999999999
Q ss_pred EEEecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCCC
Q 000548 971 YVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLS 1050 (1431)
Q Consensus 971 ~~~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~ 1050 (1431)
|++.++.|+||.++....||+.||+|+|||+.|||+++||++.++|+|+++.+ .++. ...+|++. +.++
T Consensus 923 yvd~~~~l~i~~lp~~~~Ydn~wPvkkIpl~~T~~~vvYh~e~~vy~v~t~~~--~~~~---~~~~d~~e------~~~~ 991 (1366)
T KOG1896|consen 923 YVDRQGELVICVLPEALSYDNKWPVKKIPLRKTPHQVVYHYEKKVYAVITSTP--VPYE---RLGEDGEE------EVIS 991 (1366)
T ss_pred EECCCceEEEEEcchhcccCCCCcccccccccchhheeeeccceEEEEEEecc--ceee---eccccccc------cccc
Confidence 99999999999999999999999999999999999999999999999998863 2221 11223321 2345
Q ss_pred ccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecC-CCCcceEEEEEeeeecCCCcccceeE
Q 000548 1051 SVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTT-TKENETLLAIGTAYVQGEDVAARGRV 1129 (1431)
Q Consensus 1051 ~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~-~~~~~~~ivVGT~~~~~e~~~~~Gri 1129 (1431)
.++....|..++++|+|++| .+|++++.|+|++||++++++.+.|..+. +++.++||+|||+++.|||.++|||+
T Consensus 992 ~de~~~~p~~~~f~i~LisP----~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~ 1067 (1366)
T KOG1896|consen 992 RDENVIHPEGEQFSIQLISP----ESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRI 1067 (1366)
T ss_pred ccccccccccccceeEEecC----CccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccE
Confidence 56777888899999999999 49999999999999999999999998654 45579999999999999999999999
Q ss_pred EEEEEee---cCCCC--CccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEc-cCCeeeeeEeecCCCeeEEEEEE
Q 000548 1130 LLFSTGR---NADNP--QNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKW-TGTELNGIAFYDAPPLYVVSLNI 1203 (1431)
Q Consensus 1130 ~vf~i~~---~~~~~--~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~-~~~~L~~~a~~~~~~~~i~~l~~ 1203 (1431)
++|+|++ +|++| +.|||+++++|++|+|.++|+++|+|+.|.|+||++|+| .+.+|.++||+|. |.|++++++
T Consensus 1068 hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~~~ligVaFiD~-~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1068 HIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRDSELIGVAFIDL-PLYVHSMKV 1146 (1366)
T ss_pred EEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccCCcceeeEEecc-ceeEEehhh
Confidence 9999987 77766 457999999999999999999999999999999999999 5678999999999 999999999
Q ss_pred eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEE
Q 000548 1204 VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLL 1283 (1431)
Q Consensus 1204 ~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~ 1283 (1431)
+||+|++||+|||++|++|++++.+|.+++||..++.|++++||+|+++|+|+++|+++||++|.|.|++++|++|+||.
T Consensus 1147 vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv 1226 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLV 1226 (1366)
T ss_pred hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEE--EEcCCCcEEEEEeCChHhHHHHHHHHHHHHhcCCCC
Q 000548 1284 SRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALL--FGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHV 1361 (1431)
Q Consensus 1284 ~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il--~~T~~GsIg~l~pl~e~~~~~L~~Lq~~l~~~~~~~ 1361 (1431)
++++||+|..|++|.+...... .+. + .+.+... |||++|++|+++|++|+.||||..||++|...++|+
T Consensus 1227 ~radfhvg~~vs~m~~lp~~~~-~e~-----~---~~~~~~~~v~gtlDG~l~~~~Pl~e~~YRRL~~lQn~L~~~~~hv 1297 (1366)
T KOG1896|consen 1227 RRADFHVGAHVSTMFRLPCHQN-AEF-----G---SNSPMFYEVFGTLDGGLGHLVPLDEKTYRRLLMLQNALMDRLPHV 1297 (1366)
T ss_pred eeeeeEeccceeeeEecccccc-chh-----c---cCCchhhhhhcccCCceeEEecCCHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998652221 110 1 1233444 899999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCCCCCCCceeHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhccCCC
Q 000548 1362 AGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGTSFL 1431 (1431)
Q Consensus 1362 ~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlie~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~~~~~~~ 1431 (1431)
|||||++||..+...+ ...+.+++|||+||.+|..|+.++|.++|+++|+++.+|+++|-+|.+.++||
T Consensus 1298 ~GLNPr~yR~~~s~~~-~~n~~r~ilDg~ll~~f~yl~~~er~elA~kiGt~~~eIl~DLvel~~~~s~~ 1366 (1366)
T KOG1896|consen 1298 GGLNPRAYRLLDSSLQ-LSNSLRSILDGELLNRFSYLSMSEREELAHKIGTTRKEILDDLVELDRLTSSL 1366 (1366)
T ss_pred cCCCHHHhhhccchhh-hcCCCcccchHhHHHHhhccchhhHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Confidence 9999999999876653 35789999999999999999999999999999999999999999999999886
No 2
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=100.00 E-value=9.6e-158 Score=1402.12 Aligned_cols=1067 Identities=21% Similarity=0.313 Sum_probs=893.1
Q ss_pred ccceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCccc
Q 000548 2 SFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKES 81 (1431)
Q Consensus 2 ~~~~~~~~~~pT~V~~s~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~Leiy~v~~~~~g~~~~ 81 (1431)
+|+|+.++|+||+|.+|+.|||+++... ||+|||+|+|+||.+.+ +|
T Consensus 1 ~~~Y~vtaqkpT~V~~av~gnFts~e~~---------------------------nlivAk~~~lei~~~~~--~G---- 47 (1096)
T KOG1897|consen 1 SMNYVVTAQKPTAVVTAVVGNFTSPENL---------------------------NLIVAKGNRLEILLVEP--NG---- 47 (1096)
T ss_pred CeeEEEEecCCceEeEEEeecccCccce---------------------------eeeeeccceEEEEeecc--cc----
Confidence 5889999999999999999999999865 99999999999999763 36
Q ss_pred cCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEeeee
Q 000548 82 KNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHC 161 (1431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~~klsil~~d~~~~~l~t~Slh~ 161 (1431)
|+.+.+.++||+|..|+.||+++. .+|+|+|.|+++++++|+||.+..+..|+...
T Consensus 48 -------------------Lq~i~sv~ifg~I~~i~~fRp~g~----~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~- 103 (1096)
T KOG1897|consen 48 -------------------LQPITSVPIFGTIATIALFRPPGS----DKDYLFVATDSYRYFILEWDEESIQVVTRAHG- 103 (1096)
T ss_pred -------------------ceeeEeeccceeEEEEEeecCCCC----CcceEEEEECcceEEEEEEccccceEEEEecc-
Confidence 999999999999999999999987 79999999999999999999976666665443
Q ss_pred ecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCCCCCCCCCCCCCCCCCcccceeccEEEEcccC
Q 000548 162 FESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1431)
Q Consensus 162 ~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~~~~~L~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~l 241 (1431)
+. ..|+| |+..+|++++|||.+|.+++++|++.+.+||+...... .-......|.+++.++
T Consensus 104 --~v---~dr~g-r~s~~g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sh-------------t~~s~l~~fn~rfdel 164 (1096)
T KOG1897|consen 104 --DV---SDRSG-RPSDNGQILLVDPKGRVIGLHLYQGLFKVIPIDSDESH-------------TGGSLLKAFNVRFDEL 164 (1096)
T ss_pred --cc---ccccc-ccCCCceEEEECCCCcEEEEEeecCeEEEEEecccccc-------------cCcccccccccccCcc
Confidence 22 46899 45699999999999999999999999999999865210 0111245688887777
Q ss_pred CCCceeeEeeccCCCcceEEEEeecCCCcccccccccceeEEEEEEEeeccccc-ceeeEeccCCcccceEEEecCCCCe
Q 000548 242 DMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQH-PLIWSAMNLPHDAYKLLAVPSPIGG 320 (1431)
Q Consensus 242 di~~V~D~~FL~gy~~PtlavL~~~~~tw~gr~~~~~~t~~~~~~sLd~~~k~~-~~i~s~~~lp~~~~~LipvP~p~gG 320 (1431)
||.||+||+|...||+|+||++.. || ++..|.||+..|.+ ...|+ .++..++.++||||.|.||
T Consensus 165 ---~v~Di~fly~~s~pt~~vly~Ds~---~~--------Hv~~yelnl~~ke~~~~~w~-~~v~~~a~~li~VP~~~gG 229 (1096)
T KOG1897|consen 165 ---NVYDIKFLYGCSDPTLAVLYKDSD---GR--------HVKTYELNLRDKEFVKGPWS-NNVDNGASMLIPVPSPIGG 229 (1096)
T ss_pred ---eEEEEEEEcCCCCCceEEEEEcCC---Cc--------EEEEEEeccchhhccccccc-cccccCCceeeecCCCCce
Confidence 999999999999999999999874 43 46678999986554 56799 8999999999999999999
Q ss_pred EEEEecCeEEEEecCCcceEEccCCCccCCCCcccCCCCceeeecceeEEEeeCceEEEEeCCCCEEEEEEEEcCeeeee
Q 000548 321 VLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQR 400 (1431)
Q Consensus 321 vLVi~~n~I~y~~~~~~~~~~~n~~~~~~~~~~~~p~~~~~~~ld~~~~~~~~~~~~Ll~~~~G~l~~l~l~~dg~~V~~ 400 (1431)
|||||++.|+|++++...++ +.. .+++..+. -. .....+..++||+|++|+||+|.+...+.+|++
T Consensus 230 vlV~ge~~I~Y~~~~~~~ai--~p~--------~~~~~t~~--~~--~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~ 295 (1096)
T KOG1897|consen 230 VLVIGEEFIVYMSGDNFVAI--APL--------TAEQSTIV--CY--GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSG 295 (1096)
T ss_pred EEEEeeeEEEEeeCCceeEe--ccc--------ccCCceEE--Ec--ccccCCccEEEEecCCCcEEEEEeecccccccc
Confidence 99999999999998655443 211 11222111 00 011233446899999999999999999998888
Q ss_pred --EEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEeeCCCccccCCCCccccCCcccCCccchhccCCCcchhhcc
Q 000548 401 --LDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDM 478 (1431)
Q Consensus 401 --l~l~~~~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 478 (1431)
|+++|+|++++|+||++|++|+||+||++|||+|+++.....
T Consensus 296 ~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d------------------------------------ 339 (1096)
T KOG1897|consen 296 LDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPD------------------------------------ 339 (1096)
T ss_pred eEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCC------------------------------------
Confidence 999999999999999999999999999999999999876320
Q ss_pred cCcccccccCCCCCCcccccceeEEEEeeeecccCCccccccccccccCC----CccCCCCCCCeEE------------E
Q 000548 479 VNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYEL------------V 542 (1431)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~D~~vg~~~~~d~----~~sG~g~~g~L~~------------~ 542 (1431)
...+..++++++|+|||.||+|.+...+.. .|||++++|+||+ +
T Consensus 340 --------------------~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i 399 (1096)
T KOG1897|consen 340 --------------------VGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASI 399 (1096)
T ss_pred --------------------CCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEe
Confidence 013467899999999999999976642221 3999999999998 6
Q ss_pred ecCCCCEEEEEEecCCCCCCCCcccccccCcCcceEEEEEccccceEEEeccceeeeecccccccccceEEEeeecCCcE
Q 000548 543 ELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRR 622 (1431)
Q Consensus 543 ~L~g~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eev~~~~gF~~~~~TI~~g~l~~~~~ 622 (1431)
+|||+++||+++.. .++++|.|||+||.++|+||.+++++||.. ..||.++++||+|+++ +++.
T Consensus 400 ~l~Gikg~w~lk~~--------------v~~~~d~ylvlsf~~eTrvl~i~~e~ee~~-~~gf~~~~~Tif~S~i-~g~~ 463 (1096)
T KOG1897|consen 400 DLPGIKGMWSLKSM--------------VDENYDNYLVLSFISETRVLNISEEVEETE-DPGFSTDEQTIFCSTI-NGNQ 463 (1096)
T ss_pred ecCCccceeEeecc--------------ccccCCcEEEEEeccceEEEEEccceEEec-cccccccCceEEEEcc-CCce
Confidence 89999999999853 357889999999999999999998899975 4799999999999999 6677
Q ss_pred EEEEecCcEEEEcCCcceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCccccc
Q 000548 623 VIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIES 702 (1431)
Q Consensus 623 ivQVt~~~irl~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~as~~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~ 702 (1431)
++|||+++|||++...+..+|.+| .++.|..|+.+..||+|+..++.+.|+.++... |.......
T Consensus 464 lvQvTs~~iRl~ss~~~~~~W~~p----------~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~--l~e~~~~~--- 528 (1096)
T KOG1897|consen 464 LVQVTSNSIRLVSSAGLRSEWRPP----------GKITIGVVSANASQVVVAGGGLALFYLEIEDGG--LREVSHKE--- 528 (1096)
T ss_pred EEEEecccEEEEcchhhhhcccCC----------CceEEEEEeecceEEEEecCccEEEEEEeeccc--eeeeeehe---
Confidence 999999999999988778888884 667889999999999999988999988876544 22222222
Q ss_pred CCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEE-EecCCeEEEEECCCCceeEEecccc
Q 000548 703 SKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVV-CYESGALEIFDVPNFNCVFTVDKFV 781 (1431)
Q Consensus 703 ~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v-~~~~g~l~I~sLp~~~~v~~~~~~~ 781 (1431)
.+++|+|+.+ +|.+ +... .+.+++| .|++-.+.|..+||+.+++... +
T Consensus 529 ~e~evaCLDi----sp~~------------------------d~~~-~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~-l- 577 (1096)
T KOG1897|consen 529 FEYEVACLDI----SPLG------------------------DAPN-KSRLLAVGLWSDISMILTFLPDLILITHEQ-L- 577 (1096)
T ss_pred ecceeEEEec----ccCC------------------------CCCC-cceEEEEEeecceEEEEEECCCcceeeeec-c-
Confidence 3778888854 3321 0111 2346777 5999999999999988766431 1
Q ss_pred cccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEeeeccCCCCccEEEEEeeCCeEEEEEeeecCCC
Q 000548 782 SGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGP 861 (1431)
Q Consensus 782 ~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~g~~~~~~~L~vgl~~G~l~~y~~~~~~~~ 861 (1431)
.-...+++|++..++ .+..||+++++||.++.|.++...
T Consensus 578 -------------------------------------~~~~iPRSIl~~~~e--~d~~yLlvalgdG~l~~fv~d~~t-- 616 (1096)
T KOG1897|consen 578 -------------------------------------SGEIIPRSILLTTFE--GDIHYLLVALGDGALLYFVLDINT-- 616 (1096)
T ss_pred -------------------------------------CCCccchheeeEEee--ccceEEEEEcCCceEEEEEEEccc--
Confidence 012334455556653 238999999999999999986322
Q ss_pred CCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCCCCCCCCccceEEee-ccCCceEEEEeCCCceEEEEeC
Q 000548 862 ENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFK-NISGHQGFFLSGSRPCWCMVFR 940 (1431)
Q Consensus 862 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rf~k~~~~~~~~~~~~~~~g~~~l~~f~-~~~g~~~Vf~~g~rP~~i~~~~ 940 (1431)
|.+++.|. ++ +|++|+.++. ...+.++||+||+|||++|+.+
T Consensus 617 ------------------g~lsd~Kk---~~----------------lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 617 ------------------GQLSDRKK---VT----------------LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred ------------------ceEccccc---cc----------------cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 55555443 33 7899987655 4466799999999999999999
Q ss_pred CceEEeeccCCCceEEEeeccCCCCCceEEEEEecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEEE
Q 000548 941 ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIV 1020 (1431)
Q Consensus 941 ~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~ 1020 (1431)
+++.++|+. .+.+..+|||++..|+++.++++ ++.|+|+++++.+ ++|+|+||++++||||+|++.+.+|+|+|
T Consensus 660 ~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iq----kl~irtvpl~~~prrI~~q~~sl~~~v~s 733 (1096)
T KOG1897|consen 660 GKLVYSPLS-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQ----KLHIRTVPLGESPRRICYQESSLTFGVLS 733 (1096)
T ss_pred CcEEEeccc-hHHhhhhcccccccCCceEEEec-CCceEEEEecchh----hcceeeecCCCChhheEecccceEEEEEe
Confidence 999999994 57899999999999999977666 7899999999998 67999999999999999999999999987
Q ss_pred eecccccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEee
Q 000548 1021 SVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLF 1100 (1431)
Q Consensus 1021 s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~ 1100 (1431)
.+. +. .++. ++ .....++++++|+ .||++++.++|+++|.+.|+.+|+|.
T Consensus 734 ~r~---e~-------~~~~----~~------------ee~~~s~l~vlD~----nTf~vl~~hef~~~E~~~Si~s~~~~ 783 (1096)
T KOG1897|consen 734 NRI---ES-------SAEY----YG------------EEYEVSFLRVLDQ----NTFEVLSSHEFERNETALSIISCKFT 783 (1096)
T ss_pred ccc---cc-------chhh----cC------------CcceEEEEEEecC----CceeEEeeccccccceeeeeeeeeec
Confidence 642 11 0010 00 1125678999997 58899999999999999999999995
Q ss_pred ecCCCCcceEEEEEeeeecCC-CcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEE
Q 000548 1101 NTTTKENETLLAIGTAYVQGE-DVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHK 1179 (1431)
Q Consensus 1101 ~~~~~~~~~~ivVGT~~~~~e-~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~ 1179 (1431)
++...|++|||+++.++ ++|..|||++|++.+. .+|+++|+++++|+|++|+.|||+|+||+|++|++|+
T Consensus 784 ----~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-----~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye 854 (1096)
T KOG1897|consen 784 ----DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-----NSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYE 854 (1096)
T ss_pred ----CCCceEEEEEEEeeccCCCCcccceEEEEEEecC-----CceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEE
Confidence 34578999999999764 6899999999999872 4699999999999999999999999999999999999
Q ss_pred ccCC-eeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEE
Q 000548 1180 WTGT-ELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVS 1258 (1431)
Q Consensus 1180 ~~~~-~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~ 1258 (1431)
|..+ +|...|.... |+++..|++.+|+|+|||+|+|+++++|+.+++.|+++|||++|+|++++++ +|+++ ++++
T Consensus 855 ~t~~~eLr~e~~~~~-~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtavei-l~~d~--ylga 930 (1096)
T KOG1897|consen 855 WTTERELRIECNISN-PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEI-LDDDT--YLGA 930 (1096)
T ss_pred ccccceehhhhcccC-CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEE-ecCce--EEee
Confidence 9977 5666777788 9999999999999999999999999999999999999999999999999995 88888 8999
Q ss_pred eCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEe
Q 000548 1259 DEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAP 1338 (1431)
Q Consensus 1259 D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~p 1338 (1431)
|++||++++++|...++..++++|+..+.||+|+.|++|++++++....+..++ ..+.++|||.+|+||++..
T Consensus 931 e~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~-------~~~~vlfgTv~GsIG~i~s 1003 (1096)
T KOG1897|consen 931 ENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIP-------LEPKVLFGTVNGSIGIIVS 1003 (1096)
T ss_pred cccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccC-------CCCcEEEEEccceEEEEEe
Confidence 999999999999888888889999999999999999999999877652222222 2467999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhcCCCCCCCCcccccccccCCCCCCCCCCCceeHHHHHHHcCCCHHHHHHHHHHhCCC-----
Q 000548 1339 LDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTT----- 1413 (1431)
Q Consensus 1339 l~e~~~~~L~~Lq~~l~~~~~~~~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlie~fl~L~~~~q~~ia~~l~~~----- 1413 (1431)
++++.+.+|..||++|++.++++||++|..||+|+.+.+. .|++|||||||||+|++|+++++.+|++++..+
T Consensus 1004 l~~d~~~fL~~Lq~~irk~i~s~gglsH~~yrsf~~e~~~--~P~~gfIDGDLiEsfl~l~~~~~~~i~~~~~~~~~~~s 1081 (1096)
T KOG1897|consen 1004 LPQDWYDFLEELQRRIRKVIKSVGGLSHMDYRSFEFEKRT--SPVKGFIDGDLIESFLDLSRSKMREIVRGLEHTESLAS 1081 (1096)
T ss_pred cCcchhHHHHHHHHHHHHhhcccCCcchhhHhhhhccccc--CCCcCcccchHHHhhhccCHHHHHHHHhhcccccccCC
Confidence 9999999999999999999999999999999999887775 589999999999999999999999999999877
Q ss_pred HHHHHHHHHHhhhc
Q 000548 1414 RSQILSNLNDLALG 1427 (1431)
Q Consensus 1414 ~~~i~~~l~~l~~~ 1427 (1431)
++||+|.+|||++.
T Consensus 1082 ~~el~k~vEel~rl 1095 (1096)
T KOG1897|consen 1082 VQELLKIVEELTRL 1095 (1096)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999863
No 3
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=5e-143 Score=1279.53 Aligned_cols=1130 Identities=21% Similarity=0.318 Sum_probs=928.3
Q ss_pred cceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCcccc
Q 000548 3 FAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKESK 82 (1431)
Q Consensus 3 ~~~~~~~~~pT~V~~s~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~Leiy~v~~~~~g~~~~~ 82 (1431)
|.|+++++.||+|.|+++|+|.+++.+ ++++++++.|++|++... +|
T Consensus 2 ~lysltlq~~t~i~~~~~g~fs~~k~q---------------------------eIv~~~~s~l~L~~~d~~-~G----- 48 (1205)
T KOG1898|consen 2 FLYSLTLQNQTGIVQAIYGNFSGPKAQ---------------------------EIVLGRGSILELYRIDEN-DG----- 48 (1205)
T ss_pred chhhhhhhcccceeeeehhhccCCchh---------------------------eEEEEeeeEEEEEEecCC-Cc-----
Confidence 678899999999999999999999765 999999999999998632 35
Q ss_pred CCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEeeeee
Q 000548 83 NSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCF 162 (1431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~~klsil~~d~~~~~l~t~Slh~~ 162 (1431)
||+.++++.+||+|++++.||+++. ++|+|+|++|+|+++||+|+.+++.++ ++|+
T Consensus 49 -----------------~l~~i~~~~vFg~Irsla~~~lt~~----~kD~LaV~SDSGri~il~y~~ek~~~~--~~~q- 104 (1205)
T KOG1898|consen 49 -----------------RLKTICRQEVFGTIRSLAAFRLTGG----TKDYLAVGSDSGRISILEYNNEKNHFE--KLHQ- 104 (1205)
T ss_pred -----------------eEEEEEEEeehhhhhhhhccccCCC----CccEEEEEcCCceEEEEEechhhhccc--cccc-
Confidence 4999999999999999999999986 899999999999999999999997775 5887
Q ss_pred cCcccccccCCCccccCCCeEEECCCCcEEEEE-ecCceEEEEeCccCCCCCCCCCCCCCCCCCcccceeccEEEEcccC
Q 000548 163 ESPEWLHLKRGRESFARGPLVKVDPQGRCGGVL-VYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRDL 241 (1431)
Q Consensus 163 E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~-~~~~~L~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~l 241 (1431)
|+ ++|+|+||..||+|+.+||.|||++++ +|+++|+++--+.... ...+++|++++..++.++++..+
T Consensus 105 et----fGks~~rrivpG~y~~idp~Gra~misave~~kLvyvlnrD~~a-------~ltisSpleahk~~sic~~l~~V 173 (1205)
T KOG1898|consen 105 ET----FGKSGCRRIVPGQYLAIDPKGRAVMISAVEKQKLVYVLNRDGAA-------RLTISSPLEAHKAHSICLDLVGV 173 (1205)
T ss_pred cc----cCcccceEeccccEEEEcCCccceeeehhhcCcEEEEEccchhh-------hceecCchhhccCCcEEEEEEEE
Confidence 66 799999999999999999999999998 9999999974433221 34588999999999999999999
Q ss_pred CCCceeeEeeccCCCcceEEEEeec----CCCcccccccccceeEEEEEEEeecccccceeeEeccCCcccceEEEecCC
Q 000548 242 DMKHVKDFIFVHGYIEPVMVILHER----ELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAMNLPHDAYKLLAVPSP 317 (1431)
Q Consensus 242 di~~V~D~~FL~gy~~PtlavL~~~----~~tw~gr~~~~~~t~~~~~~sLd~~~k~~~~i~s~~~lp~~~~~LipvP~p 317 (1431)
|+ ||.||+||.|+-+ ....+|..+. .+-..+.+|.||+..++..+.|+. .+++.++++++||+.
T Consensus 174 d~----------gf~np~fa~LE~dy~~a~~d~tgeaa~-~~~~~l~fYeldlglnhvvrk~s~-p~~~~~n~l~~VP~G 241 (1205)
T KOG1898|consen 174 DV----------GFENPIFAALERDYSEADNDPTGEAAT-MTQKVLTFYELDLGLNHVVRKASE-PVNHFGNFLLTVPGG 241 (1205)
T ss_pred ec----------cCCCceEEEEeechhhcccCchhhhhh-ccccceeEEEEecccceeEEEccc-ccCCCceEEEEecCC
Confidence 98 9999999999966 2223454432 222245567777777777777984 578899999999985
Q ss_pred ---CCeEEEEecCeEEEEecCCcceEEccCCCccCCCCcccCCCC--------ceeeecceeEEEeeCceEEEEeCCCCE
Q 000548 318 ---IGGVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSS--------FSVELDAAHATWLQNDVALLSTKTGDL 386 (1431)
Q Consensus 318 ---~gGvLVi~~n~I~y~~~~~~~~~~~n~~~~~~~~~~~~p~~~--------~~~~ld~~~~~~~~~~~~Ll~~~~G~l 386 (1431)
..||+||++|++.|++..- ++.-++++|++. ..+...++.+..++.+++|+|+++||+
T Consensus 242 ~D~ps~v~vc~~n~~~y~~~~d-----------~p~~ri~~~rr~~~L~~~~~~vliv~s~~hk~k~~ff~llqt~~GD~ 310 (1205)
T KOG1898|consen 242 SDGPSGVLVCAENYLLYRNLGD-----------HPDVRIPIERRINELSDAEDGVLIVSSAEHKTKSMFFFLLQTEYGDL 310 (1205)
T ss_pred CCCCcceEEecCceeecccccc-----------CCCEEeccccccccCCccccccEEEEeecccccCCeEEEEEecCCce
Confidence 4599999999999999762 111233344331 123333333344456799999999999
Q ss_pred EEEEEEEcCeeeeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEeeCCCccccCCCCccccCCcccCCccchh
Q 000548 387 VLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKR 466 (1431)
Q Consensus 387 ~~l~l~~dg~~V~~l~l~~~~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (1431)
|+++|.+|+..|..++++|+++.|.+..|++++.|+||+.|++||+.||||.+.+ +++++..
T Consensus 311 fk~tl~~d~d~v~el~lkYfDtvp~a~~L~I~k~GfLf~~sE~~n~~lyq~~~LG----------~~~~~~s-------- 372 (1205)
T KOG1898|consen 311 FKLTLEHDGDNVVELRLKYFDTVPCALQLCILKTGFLFVASEFGNHRLYQFEKLG----------EEDDDFS-------- 372 (1205)
T ss_pred EEEEEecCCCcceeeeeehhcCCccceEEEEeccceEEEhhhccCcceeehhhcC----------CCccchh--------
Confidence 9999999999999999999999999999999999999999999999999999976 3322211
Q ss_pred ccCCCcchhhcccCcccccccCCCCCCcccccceeEEEEeeeecccCCccccccccccccCCC----ccCCCCCCCeEE-
Q 000548 467 LRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADAS----ATGISKQSNYEL- 541 (1431)
Q Consensus 467 ~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~D~~vg~~~~~d~~----~sG~g~~g~L~~- 541 (1431)
+.|+.. +. +...|++. ...+|..++++.|+.|+.|+.+++..+.+.+ +||+|.+++|++
T Consensus 373 ------~~~~~~-~~-~~~~f~p~--------~l~nL~~~~~i~sl~p~~d~~I~~~~ne~~~qi~~~cg~~~~sslr~l 436 (1205)
T KOG1898|consen 373 ------NAMTSE-EG-KSVFFEPR--------ILKNLSPVSSVESLSPLLDISIGDDSNEDTPQIYSACGRGPRSSLRIL 436 (1205)
T ss_pred ------hhcccc-cC-cceecccc--------ccccccchhhhhccCccceeEeeccCcccchhhhhhhCcCccccchhh
Confidence 111110 11 22234332 2456889999999999999999987765543 999999999886
Q ss_pred -----------EecCC-CCEEEEEEecCCCCCCCCcccccccCcCcceEEEEEccccceEEEeccceeeeeccccccccc
Q 000548 542 -----------VELPG-CKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQG 609 (1431)
Q Consensus 542 -----------~~L~g-~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLvlS~~~~T~Vl~~g~~~eev~~~~gF~~~~ 609 (1431)
.+||| +.++||++.+ ..+.||.||++||.+.|+||++|+.+||+++ .||..+.
T Consensus 437 R~gle~sel~~t~lp~~~ta~WTvk~~--------------~td~ydsyivvsF~n~TlVLsIgesveEvtd-sgFls~~ 501 (1205)
T KOG1898|consen 437 RNGLEVSELLVTELPGNPTATWTVKKN--------------ITDVYDSYIVVSFVNGTLVLSIGESVEEVTD-SGFLSTT 501 (1205)
T ss_pred ccccchHHHhhhccCCCCceEEEEcCc--------------cccccceEEEEEeeccEEEEEcchhHHHhhh-cccccCC
Confidence 35786 9999999875 4689999999999999999999999999985 5999999
Q ss_pred ceEEEeeecCCcEEEEEecCcEEEEcCCcceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCC
Q 000548 610 RTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPST 689 (1431)
Q Consensus 610 ~TI~~g~l~~~~~ivQVt~~~irl~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~as~~d~~vll~~~~g~i~~l~~~~~~ 689 (1431)
+||+|+.| |++.+|||++.+||++....++.+|.+| ++.+|+.+.+++.||++++++|+++||+++.++
T Consensus 502 ~Tl~~~l~-Gd~slVQi~~d~iRhi~~~~r~~ew~~P----------~~~~Iv~~avnr~qiVvalSngelvyfe~d~sg 570 (1205)
T KOG1898|consen 502 PTLACSLM-GDDSLVQIHPDGIRHIRPTKRINEWKTP----------ERVRIVKCAVNRRQIVVALSNGELVYFEGDVSG 570 (1205)
T ss_pred ceEEEEEe-cCCcEEEEchhhhhhcccccccccccCC----------CceEEEEEeecceEEEEEccCCeEEEEEeccCc
Confidence 99999999 8899999999999999988888888884 778999999999999999999999999999777
Q ss_pred ceEEeecCcccccCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeEEEEECC
Q 000548 690 CTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVP 769 (1431)
Q Consensus 690 ~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp 769 (1431)
.+.++.+.+.+ +..++|+++..+.. +. +.+-||+++..+++++|+||.
T Consensus 571 ql~E~~er~tl---~~~vac~ai~~~~~----------------------------g~-krsrfla~a~~d~~vriisL~ 618 (1205)
T KOG1898|consen 571 QLNEFTERVTL---STDVACLAIGQDPE----------------------------GE-KRSRFLALASVDNMVRIISLD 618 (1205)
T ss_pred cceeeeeeeee---ceeehhhccCCCCc----------------------------ch-hhcceeeeeccccceeEEEec
Confidence 66677665554 66788987754431 11 224499999999999999998
Q ss_pred CCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEeeeccCCCCccEEEEEeeCCe
Q 000548 770 NFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGT 849 (1431)
Q Consensus 770 ~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~g~~~~~~~L~vgl~~G~ 849 (1431)
+..++... |.|+++++ +.++.++++.-. .|......||++|+.||.
T Consensus 619 p~d~l~~l---------------------s~q~l~~~------------~~s~~iv~~~~~-~~~~~~~L~l~~GL~NGv 664 (1205)
T KOG1898|consen 619 PSDCLQPL---------------------SVQGLSSP------------PESLCIVEMEAT-GGTDVAQLYLLIGLRNGV 664 (1205)
T ss_pred CcceEEEc---------------------cccccCCC------------ccceEEEEeccc-CCccceeEEEEecccccE
Confidence 77765532 66777665 567778776422 233346899999999999
Q ss_pred EEEEEeeecCCCCCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCCCCCCCCccceEEee-ccCCceEEEE
Q 000548 850 ILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFK-NISGHQGFFL 928 (1431)
Q Consensus 850 l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rf~k~~~~~~~~~~~~~~~g~~~l~~f~-~~~g~~~Vf~ 928 (1431)
|+++.++... |++.+.|+ || +|.+|+++|+ ...+.+.|++
T Consensus 665 llR~~id~v~--------------------G~l~d~rt---R~----------------lG~~pvkLf~~~~~~~s~vL~ 705 (1205)
T KOG1898|consen 665 LLRFVIDTVT--------------------GQLLDIRT---RF----------------LGLRPVKLFPISMRGQSDVLA 705 (1205)
T ss_pred EEEEEecccc--------------------cceeeehe---ee----------------eccccceEEEEeecCcceeEE
Confidence 9999875321 77888887 88 7899999998 6788999999
Q ss_pred eCCCceEEEEeCCceEEeeccCCCceEEEeeccCCCCCceEEEEEecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEE
Q 000548 929 SGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQIT 1008 (1431)
Q Consensus 929 ~g~rP~~i~~~~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~ 1008 (1431)
.++|||+.|..+..++++|+. +.+...+++|.+..||.|.+++. .+.|+|..+... +..++.+.+|+++||||++
T Consensus 706 lSsr~wl~y~~~~~~h~t~Is-y~~l~~as~~~S~qcpeGiv~i~-~n~l~i~~~~~~---g~~~n~~~~~l~~tprkvv 780 (1205)
T KOG1898|consen 706 LSSRPWLLYTYQQEFHLTPIS-YSTLEHASPFCSEQCPEGIVAIS-KNTLRIIALDKL---GKVLNVDGFPLAYTPRKVV 780 (1205)
T ss_pred ecCChhhhhhhcceeeeeccc-ccchhccccccccCCCcchhhhh-hhhhheeeehhh---cccccccccccccCcceEE
Confidence 999998888889999999994 56899999999999999977666 679999999874 4578999999999999999
Q ss_pred EecCCCeEEEEEeeccc-----cccccccccc---ccccccccccCC-------CCCcccccccc---ccceEEEEEecc
Q 000548 1009 YFAEKNLYPLIVSVPVL-----KPLNQVLSLL---IDQEVGHQIDNH-------NLSSVDLHRTY---TVEEYEVRILEP 1070 (1431)
Q Consensus 1009 y~~~~~~~~v~~s~~~~-----~~~~~~~~~~---~d~e~~~~~~~~-------~~~~~~~~~~~---~~~~~~v~lid~ 1070 (1431)
+||++++.+++++.... ...++.+... ..++...+.+.+ +...+.....| ....++|+++|+
T Consensus 781 ~h~es~lLii~~td~~~~~~~~a~~~~~~~g~v~~s~~~~e~e~g~em~~~~~~~~~~~~v~~~p~a~~~w~s~I~~~d~ 860 (1205)
T KOG1898|consen 781 IHPESGLLIIGRTDHNATLTKDARKNQMEAGGVLESGEEKEDEMGGEMEIIGREEVLPENVYGSPRAGNGWVSSIRVFDP 860 (1205)
T ss_pred EecCCCeEEEEEecccchhhHHHhhhhhhcccccccccccchhhccchhhhccccccccccccCcccccCccceEEEEcC
Confidence 99999999999885210 0001100000 000000000100 00000000000 113457999998
Q ss_pred CCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCC--cccceeEEEEEEeecCCCCCccEEEE
Q 000548 1071 DRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGED--VAARGRVLLFSTGRNADNPQNLVTEV 1148 (1431)
Q Consensus 1071 ~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~--~~~~Gri~vf~i~~~~~~~~~~l~lv 1148 (1431)
.+. .+++.+++.+||...|++.+.|.+ .+..++++||++.+...+ ..+.|++|+|++..+.+ +|+++
T Consensus 861 ~s~----~~~~~~~l~~ne~a~~v~~~~fs~---~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~----~lell 929 (1205)
T KOG1898|consen 861 KSG----KIICLVELGQNEAAFSVCAVDFSS---SEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD----KLELL 929 (1205)
T ss_pred CCC----ceEEEEeecCCcchhheeeeeecc---CCCceEEEEEeeccccccccccCCCceEEEEEEecCc----eeeee
Confidence 643 678899999999999999999974 233479999999887654 45889999999998632 69999
Q ss_pred EEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccE
Q 000548 1149 YSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQ 1228 (1431)
Q Consensus 1149 ~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~ 1228 (1431)
|++++.|+|.|||.|+|++++|+|..+++|++++|+|+|++....+|.+|+++.+.+.||+|||+++||.|++|++++++
T Consensus 930 h~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 930 HKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred eccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCe
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCc------------------cCceEEEEEEEec
Q 000548 1229 LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESW------------------KGQKLLSRAEFHV 1290 (1431)
Q Consensus 1229 l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~------------------~~~~L~~~~~fhl 1290 (1431)
|+.+|+|+.|||||++. ++|+++ ++++|++||+|+++.+|+.++.. ..+|.+.+.+||+
T Consensus 1010 l~~fadD~~pR~Vt~~~-~lD~~t--vagaDrfGNi~~vR~P~d~~e~~~edpt~~k~~~~~g~lN~~~~K~~~i~~f~v 1086 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALE-LLDYDT--VAGADRFGNIAVVRIPPDVSEEASEDPTELKIAWEQGFLNDAPQKVQLISQFFV 1086 (1205)
T ss_pred EEEEeCCCccceeeEEE-EecCCc--eeeccccCcEEEEECCCcchhhhccCCccccceecccccccccHhhhhhhhccc
Confidence 99999999999999999 589999 89999999999999988766522 1457888999999
Q ss_pred CcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEeCC-hHhHHHHHHHHHHHHhcCCCCCCCCcccc
Q 000548 1291 GAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLD-ELTFRRLQSLQKKLVDSVPHVAGLNPRSF 1369 (1431)
Q Consensus 1291 g~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl~-e~~~~~L~~Lq~~l~~~~~~~~Gl~~~~~ 1369 (1431)
||.++++++.+++++. ++.++|+|+.|+||+++|+. ++++++++.+|.+|+...++++|+||.+|
T Consensus 1087 ~Dvits~q~~~~i~~a--------------~e~~iy~tl~GtiG~f~p~~s~~d~~Ff~~~e~~~r~e~ppl~GrDH~~y 1152 (1205)
T KOG1898|consen 1087 GDVITSLQKVSSIPGA--------------RESLIYTTLLGTIGVFAPFLSREDVDFFQHLEMHMRKEYPPLLGRDHLEY 1152 (1205)
T ss_pred cCeeeeceeeeeccCC--------------cceeeeeeccccceEEeecccccchHHHHHHHHhccccCCcccCcchhhh
Confidence 9999999999888753 57899999999999999994 45788899999999999999999999999
Q ss_pred cccccCCCCCCCCCCCceeHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Q 000548 1370 RQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLALGT 1428 (1431)
Q Consensus 1370 R~~~~~~~~~~~~~~~~IDGDlie~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~~~~ 1428 (1431)
|+| |.|+|.||||||||+|+.|+..+|+++|+.++++++||.++||++|.++
T Consensus 1153 Rsy-------y~Pvk~VIDGDlceqF~~L~~~~Qe~va~el~~ti~eI~kkledir~~~ 1204 (1205)
T KOG1898|consen 1153 RSY-------YAPVKKVIDGDLCEQFLRLEENQQEEVAEELDRTIEEISKKLEDIRTRY 1204 (1205)
T ss_pred hhh-------ccchhhcccHHHHHHHhhCCHHHHHHHHhcccCCHHHHHHHHHHHHhhc
Confidence 999 7899999999999999999999999999999999999999999999764
No 4
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=100.00 E-value=2.7e-119 Score=1045.90 Aligned_cols=1226 Identities=19% Similarity=0.277 Sum_probs=920.6
Q ss_pred CccceeccccCCceeeeeEEEEeecCCCCCCCCCcccccccccccCCCCCCCCCCCcEEEEcCCeEEEEEEEEeccCCcc
Q 000548 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1431)
Q Consensus 1 ~~~~~~~~~~~pT~V~~s~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLvvak~~~Leiy~v~~~~~g~~~ 80 (1431)
|+| +|..+...|.++||+.|+||+.... ||+|.|+|.|+||+...+ +.
T Consensus 1 m~~-~y~d~~d~tv~~~~~ag~Ft~s~~~---------------------------~llv~~~Nil~v~~~~~d--~~-- 48 (1319)
T COG5161 1 MNY-LYSDESDWTVTEGCSAGLFTPSRTC---------------------------SLLVYNGNILAVRLWKYD--SG-- 48 (1319)
T ss_pred Ccc-hhhhhhHHHHhhccccceeeccccc---------------------------eEEEEeccEEEEEEeecc--CC--
Confidence 444 4568889999999999999998765 999999999999998744 53
Q ss_pred ccCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEeee
Q 000548 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH 160 (1431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~~klsil~~d~~~~~l~t~Slh 160 (1431)
|.++.++.++|.|++|....-... .+|.|++.|..||+++++||...+.|.|+|+|
T Consensus 49 --------------------l~l~de~~~~e~~t~I~~~pq~~s----e~~~lll~t~~akis~lrf~sq~n~f~Tislh 104 (1319)
T COG5161 49 --------------------LVLVDEHMLLEKVTQIEKYPQISS----EQDGLLLLTHRAKISLLRFDSQANEFRTISLH 104 (1319)
T ss_pred --------------------eeEchHHhhhhhhhhhhhcccccC----ccceEEEEeccceEEEEEehhhcccceeEEEe
Confidence 999999999999999998855544 68999999999999999999999999999999
Q ss_pred eecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCCC--CCCCCCCCCC---------CCCC----
Q 000548 161 CFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGS--GLVGDEDTFG---------SGGG---- 225 (1431)
Q Consensus 161 ~~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~~~~~L~ilp~~~~~~--~l~~~~~~~~---------~~~~---- 225 (1431)
|||..- .+++=. .......+.-||++.|+ ++.|++...++||+-... ++.+.|.... +.-|
T Consensus 105 yyeGKf--kgksLv-elak~stle~D~~ssca-LlfneDi~~flpfhvnkndddev~~d~D~~~~~~~~~h~~i~psqgt 180 (1319)
T COG5161 105 YYEGKF--KGKSLV-ELAKFSTLEFDIRSSCA-LLFNEDIGNFLPFHVNKNDDDEVRIDVDLGMFQMSKRHFSIFPSQGT 180 (1319)
T ss_pred eecccc--CCchhh-hhhhhhheeeccCccch-hhhhhhhhhcccccccCCccccccccccccHHHHHHHHhhcCCCCCc
Confidence 999841 011111 12334678999999886 467888889999974332 2222221110 0000
Q ss_pred -----------cccceeccEEEEcccCC--CCceeeEeeccCCCcceEEEEeecCCCcccccccccceeEEEEEEEeecc
Q 000548 226 -----------FSARIESSHVINLRDLD--MKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTL 292 (1431)
Q Consensus 226 -----------~~~~~~~s~~i~l~~ld--i~~V~D~~FL~gy~~PtlavL~~~~~tw~gr~~~~~~t~~~~~~sLd~~~ 292 (1431)
...--.||+++..++|| |+||+|++||++|.+||+|+||+|.++|++....+|+++...+++||++.
T Consensus 181 ntfnkrkrt~~~~kfsaPs~Vl~~seld~~ikniiD~~FL~ny~~PTvallY~Pkl~~~~~~ti~k~p~~~~v~Tldl~~ 260 (1319)
T COG5161 181 NTFNKRKRTLFPGKFSAPSKVLKFSELDGKIKNIIDFVFLENYSIPTVALLYDPKLSLPRKYTILKNPYNAIVFTLDLGA 260 (1319)
T ss_pred cccchhhhhhcCCcccCceeEEEehhhhccccccEEEEeeccCCCceEEEEecccccccceeEeecCceeEEEEEEecCc
Confidence 01112589999999998 99999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeccCCcccceEEEecCCCCeEEEEecCeEEEEecCC-cceEEccCCCccCCCCc-ccCCC--Cceeeeccee
Q 000548 293 KQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSA-SCALALNNYAVSLDSSQ-ELPRS--SFSVELDAAH 368 (1431)
Q Consensus 293 k~~~~i~s~~~lp~~~~~LipvP~p~gGvLVi~~n~I~y~~~~~-~~~~~~n~~~~~~~~~~-~~p~~--~~~~~ld~~~ 368 (1431)
..+.+|-.+..||+|-+..+|+| -|.|++|.|.++|+|..+ .+++.+|+++.....+. ..+++ ++.....|..
T Consensus 261 ~~saVI~~~~~lP~d~~~~v~~p---~Gall~g~neli~idstg~~~~I~lNs~~~k~~~~~~v~d~s~~d~n~~~~gtt 337 (1319)
T COG5161 261 GRSAVIDEFLVLPRDFRVTVAGP---VGALLFGSNELILIDSTGSSYTIPLNSMSEKYGGNKIVEDISLSDVNCFSRGTT 337 (1319)
T ss_pred chhhhhHhHhcCCceEEEEEecc---cceEEEecccEEEEecCCcEEEeechhhHHHhcCCceEeecccceeeEeecCce
Confidence 98888888888999999999988 489999999999999987 68899999986654443 33444 4556777777
Q ss_pred EEEeeC-----ceEEEEeCCCCEEEEEEEEcCeeeeeEEEEec---C----CCccccceEEecCCeEEEEeecCCeeEEE
Q 000548 369 ATWLQN-----DVALLSTKTGDLVLLTVVYDGRVVQRLDLSKT---N----PSVLTSDITTIGNSLFFLGSRLGDSLLVQ 436 (1431)
Q Consensus 369 ~~~~~~-----~~~Ll~~~~G~l~~l~l~~dg~~V~~l~l~~~---~----~~~~~s~l~~l~~g~lFvgS~~GDS~L~~ 436 (1431)
.-|+.. .++++++-+|+.|+|.+.+||+++.++.|..+ + ..+-++|+..+++..+|+|+..+||.+++
T Consensus 338 sIwipsSK~~~etl~l~dl~g~~yyl~~~~dgk~iigfdi~~L~~e~dllk~~s~~~Cv~~~n~~l~f~g~g~~ns~vlr 417 (1319)
T COG5161 338 SIWIPSSKCLIETLFLGDLNGDRYYLRISMDGKRIIGFDIASLEFEGDLLKKGSAVSCVGHVNNLLFFGGVGDSNSRVLR 417 (1319)
T ss_pred eeeccCcccccceEEEEecCCCEEEEEEEeccceeeccceeeeeeeccccccCCCCeeEEEcCceEEEEEecCCceEEEE
Confidence 777764 36899999999999999999999988666654 2 56779999999999999999999999999
Q ss_pred EeeCCCccccCCCCccccCCcccCCccchhccCCCcchhhcccCcccccccCCCCCCcccccceeEEEEeeeecccCCcc
Q 000548 437 FTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLK 516 (1431)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~NigPI~ 516 (1431)
|.+...........|.+ ..++ ..+++|||.++..|-.+++........+..++.+++++.+.|+|||.
T Consensus 418 ~~~l~~tiEtR~~eG~~--~l~g----------~nDeEmdD~y~apEn~l~~n~~~~v~~~~~p~d~el~~~l~n~gpit 485 (1319)
T COG5161 418 IKSLLPTIETRASEGVG--PLEG----------GNDEEMDDEYSAPENKLFGNKEQEVRRQDEPYDAELFNALSNAGPIT 485 (1319)
T ss_pred ecccCCchhhhhhcCCC--cccC----------CChhhhhhhhcccccccccCcccceeeccCcchhHHhhhhccCCccc
Confidence 99876321111001110 0000 00223444444344444443322222223456789999999999999
Q ss_pred cccccccccc---CC---------CccCCCCCCCeEE------------EecCCCCEEEEEEecCCCCCCCCcccccccC
Q 000548 517 DFSYGLRINA---DA---------SATGISKQSNYEL------------VELPGCKGIWTVYHKSSRGHNADSSRMAAYD 572 (1431)
Q Consensus 517 D~~vg~~~~~---d~---------~~sG~g~~g~L~~------------~~L~g~~~iWtv~~~~~~~~~~~~~~~~~~~ 572 (1431)
||+||+.... .. ...|.+..|.|.+ ..+-++..+|+++.+... ..
T Consensus 486 dfavgkv~v~kglP~pN~g~l~lV~t~G~ds~~~l~V~~ts~~P~I~~~~~fi~~e~vw~~kI~g~l-----------r~ 554 (1319)
T COG5161 486 DFAVGKVDVEKGLPIPNIGLLNLVVTKGSDSEAALAVEGTSLEPCICTVSSFIPLEIVWSQKIRGYL-----------RC 554 (1319)
T ss_pred ceeeeeccceecCCCCCccceeeEEeccCCCcceEEEEeccccceeeehccccchhheeehhcccee-----------hh
Confidence 9999987522 01 1567777778876 234578999999875321 11
Q ss_pred cCcceEEEEEccccceEEEeccceeeeecccccccccceEEEeeecCCcEEEEEecCcEEEEcCCc-ceEEEeCCCCCCC
Q 000548 573 DEYHAYLIISLEARTMVLETADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSY-MTQDLSFGPSNSE 651 (1431)
Q Consensus 573 ~~~~~yLvlS~~~~T~Vl~~g~~~eev~~~~gF~~~~~TI~~g~l~~~~~ivQVt~~~irl~~~~~-~~~~~~~~~~~~~ 651 (1431)
...-.|+++|..+.|.||+.++++.+.. ...|..+..|+.++.++.+.++|||||+.++++|.+. +.+.+...
T Consensus 555 ~~~~~~~~ls~~s~S~If~~~e~f~l~~-~g~~~rd~~Tl~~~~fgee~rvVQvtp~~l~~yD~~lR~l~~~~F~----- 628 (1319)
T COG5161 555 SRALDFYILSRVSDSRIFRWSEEFLLEV-SGEYTRDVNTLLFVEFGEENRVVQVTPSYLLRYDQDLRMLGRVEFA----- 628 (1319)
T ss_pred cceeeEEEeecccccceeeccccceeee-cceeeccccEEEeeeccCcceEEEecchHhhhhcccceeeeeEeec-----
Confidence 2235799999999999999999988764 4678899999999999888999999999999999875 56666662
Q ss_pred CCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCce-EEeecCcccccCCCceEEEEeeccCCCCccccccccccc
Q 000548 652 SGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCT-VSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAW 730 (1431)
Q Consensus 652 ~~~~~~~~~I~~as~~d~~vll~~~~g~i~~l~~~~~~~~-l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~ 730 (1431)
...|++.+++||++++....|.|..|..+.++.+ +.+..+..+. +-.+.+.-+.+.++.
T Consensus 629 ------~~~V~~~Sv~Dp~ilvv~~~g~i~~f~~~ekn~rL~k~dl~~~l~--d~k~~s~v~~dsN~~------------ 688 (1319)
T COG5161 629 ------SRAVEARSVRDPLILVVRDSGKILTFYDREKNMRLFKIDLVTCLA--DAKNKSFVLSDSNSL------------ 688 (1319)
T ss_pred ------eeeeEEEeccCCEEEEEEecCceEEEEehhhhchhccCChHHHHH--hhhhheEeccCcccc------------
Confidence 1248999999999999999999999988766544 3433333331 222233222222110
Q ss_pred ccCCccccccCCCCCCCCCCcEEEEEE-ecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCcc
Q 000548 731 LSTGVGEAIDGADGGPLDQGDIYSVVC-YESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEE 809 (1431)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~v~-~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~ 809 (1431)
|.+.. +....+.-..++.. ..+..+--..-|..+.+++.++.+...+. .. ..+..+.
T Consensus 689 ---g~f~i-----g~~~Sq~e~~l~~~~~~~~q~~~~~s~~~D~~~e~dg~dQlte~----~~-----~~tynl~----- 746 (1319)
T COG5161 689 ---GIFDI-----GKRISQLEPCLVKGLPYAIQFSPEASPAMDLAGEEDGDDQLTEI----SM-----SLTYNLI----- 746 (1319)
T ss_pred ---cceec-----ccchhhhchhhhhcCcccceeccccCcchhhccccccchhhhhH----HH-----HHHHhhh-----
Confidence 00000 00000001112221 12222222233344445544433211111 00 0000000
Q ss_pred CCCCCcccccccccEEEEEeeeccCCCCccEEEEEeeCCeEEEEEeeecCCCCCCCCCCCCCcccccccccccccccccc
Q 000548 810 GTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRN 889 (1431)
Q Consensus 810 ~~~~~~~~~~~~~~i~~i~~~~~g~~~~~~~L~vgl~~G~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 889 (1431)
.+.-..+.+.+++++.+|.+-+.+||++....|+++.|+.++...
T Consensus 747 ------d~~f~lpsi~~~mVa~lg~D~keeyLf~~s~~~EI~~yk~~l~r~----------------------------- 791 (1319)
T COG5161 747 ------DMLFRLPSIGNYMVAYLGLDLKEEYLFDNSLSSEIVFYKTHLPRH----------------------------- 791 (1319)
T ss_pred ------hhhccChhhhhhhhHhhcccccchheehhhcCceEEEEeeccccc-----------------------------
Confidence 000123457788888999888999999999999999999864321
Q ss_pred eeEEec----cCCccCCCCCCC---CCCccceE-EeeccCCceEEEEeCCCceEEEEe-CCceEEeeccCCCceEEEeec
Q 000548 890 LRFSRT----PLDAYTREETPH---GAPCQRIT-IFKNISGHQGFFLSGSRPCWCMVF-RERLRVHPQLCDGSIVAFTVL 960 (1431)
Q Consensus 890 ~rf~k~----~~~~~~~~~~~~---~~g~~~l~-~f~~~~g~~~Vf~~g~rP~~i~~~-~~~l~~~pl~~~~~v~~~~~f 960 (1431)
.+|.+- .+-+...+++.. .....+|. .|....|++.+|++|..|+++.+. +....+.|.. .-|+.+++||
T Consensus 792 ~~f~~nvTRndlAitGaPdna~~Ka~sSV~ri~m~f~~~vghs~~fvTg~~pfl~~s~~~s~~k~f~~g-NIPlvsv~p~ 870 (1319)
T COG5161 792 VSFNLNVTRNDLAITGAPDNADIKAFSSVGRIDMVFIKAVGHSFMFVTGKGPFLCRSRYTSSSKAFHRG-NIPLVSVIPL 870 (1319)
T ss_pred chhhhhcchhhhhccCCCcchhhhhcccccceeEEEeeccCeEEEEEcCCccEEEEEeccCCcceeecC-CCceeeeeec
Confidence 123221 000000011100 01122333 466667799999999999998875 5555556653 4689999999
Q ss_pred cCCCCCceEEEEEecCeEEEEEcCCCCccC-CCcceEEeeCCCcccEEEEecCCCeEEEEEeeccccccccccccccccc
Q 000548 961 HNVNCNHGFIYVTSQGILKICQLPSGSTYD-NYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQE 1039 (1431)
Q Consensus 961 ~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d-~~~~ir~i~L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e 1039 (1431)
+. .|.++++.....|+|++.....|+ ++||++++|++.|..+++||+..+.|+|....+ .++ . +..+|+|
T Consensus 871 s~----rgy~~Vd~~~~vr~~~~~~dn~y~gnK~p~k~~~~~Ktlqklvyh~~~~~~~Vgsc~~--~~f--~-~~gEdgE 941 (1319)
T COG5161 871 SK----RGYLMVDNVLGVRASQYVFDNGYVGNKNPVKRTPKHKTLQKLVYHCAGRYMVVGSCEE--AGF--S-PKGEDGE 941 (1319)
T ss_pred cc----ccEEEEecccceeEEEEEeccceecccCceeeccccccccceeeeccceEEEEEeeee--cCc--c-ccCCCCC
Confidence 76 789999988899999988766665 999999999999999999999999999976642 222 1 1223443
Q ss_pred ccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeee-cCCCCcceEEEEEeeee
Q 000548 1040 VGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFN-TTTKENETLLAIGTAYV 1118 (1431)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~-~~~~~~~~~ivVGT~~~ 1118 (1431)
.....+ +....+...++.|-|++| .+|+++|+|+|++||.+..++.+.++. +.++.+++||+|||++.
T Consensus 942 ~~i~~D-------~Nvphaeg~~~~vdL~sp----ksw~vID~yef~~ne~v~~i~~~~l~~~~~tk~k~pyi~vgtt~~ 1010 (1319)
T COG5161 942 SGIPVD-------TNVPHAEGYRFYVDLYSP----KSWEVIDTYEFDENEYVFHIKYLILDDMQGTKGKSPYILVGTTFI 1010 (1319)
T ss_pred ccCccC-------CCCcccccceeeEEEecC----cceeEeeeeecccceeeeeeeeeeeeccccccCCCceEEEEeeec
Confidence 222111 112334457889999998 499999999999999999999999984 45777899999999999
Q ss_pred cCCCcccceeEEEEEEee---cCCCCC--ccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCC-eeeeeEeec
Q 000548 1119 QGEDVAARGRVLLFSTGR---NADNPQ--NLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGT-ELNGIAFYD 1192 (1431)
Q Consensus 1119 ~~e~~~~~Gri~vf~i~~---~~~~~~--~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~-~L~~~a~~~ 1192 (1431)
.|||.|.+||+++|+|++ +|++|. .|||++..+|++|.|..+|++.||++.|.||||+|+++++. .+.+++|+|
T Consensus 1011 ~gED~p~rG~~hv~eII~VVP~pg~P~t~~KLK~~~~Ee~kGTV~~vcEV~G~~~~~qgqKV~Vr~i~~~~~iipV~F~D 1090 (1319)
T COG5161 1011 EGEDRPARGRLHVLEIISVVPSPGSPFTDCKLKVLGIEETKGTVVRVCEVRGKIALCQGQKVMVRKIDRSSGIIPVGFYD 1090 (1319)
T ss_pred ccCccCCcCceEEEEEEEecCCCCCCcccceeeEEehhhcccEEEEEEEEccEEEeccCcEEEEEEecccCCcceeEEEe
Confidence 999999999999999986 555553 47999999999999999999999999999999999999864 599999999
Q ss_pred CCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCC
Q 000548 1193 APPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPK 1272 (1431)
Q Consensus 1193 ~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~ 1272 (1431)
. ++|++++++.+|++++||+|++++|+.|++++++|+.+++....+.+++.+||+.++.|+|+++|..|||+++.|+|+
T Consensus 1091 l-~~ft~s~k~~~Nlll~gD~~qg~~F~gF~~ePyRm~l~s~s~~~~n~~s~efLv~G~~lyf~~~Da~gnih~l~Y~P~ 1169 (1319)
T COG5161 1091 L-HIFTSSIKVVKNLLLAGDIYQGLSFFGFQSEPYRMHLISSSEPLRNATSTEFLVTGNELYFLCCDAKGNIHGLTYSPN 1169 (1319)
T ss_pred e-eeeeehhhhhhheeehhhhhcCcEEEEecCCcEEEEEecCCchhhcchhhHhhccCCeeEEEEEcCCCCEEEEecCCC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEeCChHhHHHHHHHHH
Q 000548 1273 MSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQK 1352 (1431)
Q Consensus 1273 ~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl~e~~~~~L~~Lq~ 1352 (1431)
+|+|+.|+||..+++||+|...++|.- .|...+. |.......+.+|+-.+|++-.++|+++..||||.-+|+
T Consensus 1170 np~S~sG~RLV~rssFtlhs~~~~m~l---lPrn~ef-----G~~~~~~f~~v~~~sdG~l~~vvpisd~~YrrL~~IQ~ 1241 (1319)
T COG5161 1170 NPISMSGARLVKRSSFTLHSAEIKMNL---LPRNSEF-----GAGFKKNFIMVYSRSDGMLIHVVPISDAHYRRLLGIQT 1241 (1319)
T ss_pred CccccCcceeEeeccccccchhhhhhh---ccchhhh-----CCCCCCceeEEEEccCCcEEEEeccCHHHHHHHHHHHH
Confidence 999999999999999999999999864 4433222 22233468899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCcccccccccCCCCCCCCCCCceeHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhhh
Q 000548 1353 KLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLAL 1426 (1431)
Q Consensus 1353 ~l~~~~~~~~Gl~~~~~R~~~~~~~~~~~~~~~~IDGDlie~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~~ 1426 (1431)
++...+.+++||||++||-.. +...+..+.|.++|+.+|..|-.|+.+.|+++|++.|+-...++.+|-++..
T Consensus 1242 ~i~~r~~~vgGLNpr~yRL~~-d~~~~~~s~r~~ld~~ii~~F~y~~~~~r~sva~kaGr~~~~e~~D~i~~~~ 1314 (1319)
T COG5161 1242 AIMARLKSVGGLNPRDYRLNS-DIHLHSLSLRSPLDLHIINLFSYFDMSTRESVASKAGRIDRKEISDMIASLN 1314 (1319)
T ss_pred HHHHHHHhhcCCChhhhhhcc-CHHHhcCCcccchhhhhhhhhhhcchhhhhHHHhhcCCchHHHHHHHHHHHH
Confidence 999999999999999999653 2222246789999999999999999999999999999876644445444433
No 5
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=100.00 E-value=3.6e-53 Score=529.01 Aligned_cols=452 Identities=29% Similarity=0.447 Sum_probs=301.6
Q ss_pred cEEEEEeccceEEEEEEeCCCCCeeEEeeeeecCcccccccCCCccccCCCeEEECCCCcEEEEEecCceEEEEeCccCC
Q 000548 131 DSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGG 210 (1431)
Q Consensus 131 D~Llv~~~~~klsil~~d~~~~~l~t~Slh~~E~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~~~~~L~ilp~~~~~ 210 (1431)
|+|+|+|+++++++|+|+++++++.+.++|+++. +.+.|.|+..+|++++|||.|||+|+++|++.+.|+|+++..
T Consensus 1 D~L~v~tdsg~l~~l~~~~~~~~~~~~~v~~~~~----~~~~~~r~~~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~ 76 (504)
T PF10433_consen 1 DSLVVTTDSGKLSILEYDPSTHGFFKEFVHQWEP----LSKSGSRLSQPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSL 76 (504)
T ss_dssp -EEEEEETTTEEEEEEEEEETTEE-E-EEEEEEE-------SSSEB-TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS--
T ss_pred CEEEEEECCCCEEEEEEECCCCccceeeEEEeEe----cCCCCCChhcCCcEEEECCcCCEEEEEecCCeEEEEEecccc
Confidence 7999999999999999999988875556777644 678999999999999999999999999999999999998721
Q ss_pred CCCCCCCCCCCCCCCcccceeccEEEEcccCCCCceeeEeecc---CCCcceEEEEeecCCCcccccccccceeE--EEE
Q 000548 211 SGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVH---GYIEPVMVILHERELTWAGRVSWKHHTCM--ISA 285 (1431)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~ldi~~V~D~~FL~---gy~~PtlavL~~~~~tw~gr~~~~~~t~~--~~~ 285 (1431)
.. .... .+.+..++. ...+|+||+||| ||++|+||+||.+.+.|.. ..++ ...
T Consensus 77 ~~------~~~~--------~~~~~~pi~--s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~------~~~y~w~~~ 134 (504)
T PF10433_consen 77 DS------DIAF--------SPHINSPIK--SEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTH------LVTYEWSLD 134 (504)
T ss_dssp --------T-TT-----------EEEE----S-SEEEEEEEES---S-SS-EEEEEEEETT-EEE------EEEEE----
T ss_pred cc------cccc--------ccccccccc--CCceEEEEEEEecccCCCCceEEEEEEEecccce------eEEEeeecc
Confidence 00 0000 112222221 134999999999 9999999999999753211 1111 122
Q ss_pred EEEeecccccce---eeEeccCCcccceEEEecCCCCeEEEEecCeEEEEecCCc----ceEEccCCCccCCCCcccCCC
Q 000548 286 LSISTTLKQHPL---IWSAMNLPHDAYKLLAVPSPIGGVLVVGANTIHYHSQSAS----CALALNNYAVSLDSSQELPRS 358 (1431)
Q Consensus 286 ~sLd~~~k~~~~---i~s~~~lp~~~~~LipvP~p~gGvLVi~~n~I~y~~~~~~----~~~~~n~~~~~~~~~~~~p~~ 358 (1431)
..++...++... +|....+| ++|||||.|.||+||++++.|+|.++... ....++.. ...+.
T Consensus 135 ~~l~~~~~~~~~~~~l~~~~~~p---~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~~--------~~~~~ 203 (504)
T PF10433_consen 135 DGLNHVISKSTLPIRLPNEDELP---SFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPSP--------PSSSS 203 (504)
T ss_dssp ----EETTTTEEEE--EEEE-TT---EEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--H---------HHHT
T ss_pred cccceeeeeccccccccccCCCc---cEEEEcCCCCcEEEEECCEEEEEecccccccccccccccCC--------ccCCC
Confidence 334444333322 45555666 99999999999999999999999976432 11111100 00011
Q ss_pred Cceeeecc---eeEEEeeCceEEEEeCCCCEEEEEEEEcCeeeeeEEEEecCC-CccccceEEecCC--eEEEEeecCCe
Q 000548 359 SFSVELDA---AHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNP-SVLTSDITTIGNS--LFFLGSRLGDS 432 (1431)
Q Consensus 359 ~~~~~ld~---~~~~~~~~~~~Ll~~~~G~l~~l~l~~dg~~V~~l~l~~~~~-~~~~s~l~~l~~g--~lFvgS~~GDS 432 (1431)
.++..... ......+.+++||++++|+||+|.+..+++ +++++++|+ .++|++++++++| +||+||++|||
T Consensus 204 ~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~---~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds 280 (504)
T PF10433_consen 204 SLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG---SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDS 280 (504)
T ss_dssp S-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE---EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-E
T ss_pred ceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC---eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCc
Confidence 22221110 001234457899999999999999999887 899999999 9999999999999 99999999999
Q ss_pred eEEEEeeCCCccccCCCCccccCCcccCCccchhccCCCcchhhcccCcccccccCCCCCCcccccceeEEEEeeeeccc
Q 000548 433 LLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSDALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNI 512 (1431)
Q Consensus 433 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~d~l~Ni 512 (1431)
+|+|+.. .+++++|+++|+
T Consensus 281 ~l~~~~~-------------------------------------------------------------~~l~~~~~~~N~ 299 (504)
T PF10433_consen 281 QLLQISL-------------------------------------------------------------SNLEVLDSLPNW 299 (504)
T ss_dssp EEEEEES-------------------------------------------------------------ESEEEEEEE---
T ss_pred EEEEEeC-------------------------------------------------------------CCcEEEEeccCc
Confidence 9999963 247899999999
Q ss_pred CCcccccccccccc-CC---------CccCCCCCCCeEE--------------EecCCCCEEEEEEecCCCCCCCCcccc
Q 000548 513 GPLKDFSYGLRINA-DA---------SATGISKQSNYEL--------------VELPGCKGIWTVYHKSSRGHNADSSRM 568 (1431)
Q Consensus 513 gPI~D~~vg~~~~~-d~---------~~sG~g~~g~L~~--------------~~L~g~~~iWtv~~~~~~~~~~~~~~~ 568 (1431)
|||.||++++.... .. +|||.|++|+|++ .++++++++|+++...
T Consensus 300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~----------- 368 (504)
T PF10433_consen 300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSS----------- 368 (504)
T ss_dssp -SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSS-----------
T ss_pred CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecC-----------
Confidence 99999999876422 11 3999999999987 3688999999998641
Q ss_pred cccCcCcceEEEEEccccceEEEec-----cceeeeecccccccccceEEEeeecCCcEEEEEecCcEEEEcC--CcceE
Q 000548 569 AAYDDEYHAYLIISLEARTMVLETA-----DLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDG--SYMTQ 641 (1431)
Q Consensus 569 ~~~~~~~~~yLvlS~~~~T~Vl~~g-----~~~eev~~~~gF~~~~~TI~~g~l~~~~~ivQVt~~~irl~~~--~~~~~ 641 (1431)
+. |.|||+|+.++|+||+++ ++++|+++. +|.++++||+||++ +++++||||+++||+++. .+..+
T Consensus 369 ----~~-~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~-~~~~ivQVt~~~i~l~~~~~~~~~~ 441 (504)
T PF10433_consen 369 ----SD-HSYLVLSFPNETRVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNV-GDGRIVQVTPKGIRLIDLEDGKLTQ 441 (504)
T ss_dssp ----SS-BSEEEEEESSEEEEEEES----SSEEEEE----TS-SSS-EEEEEEE-TTTEEEEEESSEEEEEESSSTSEEE
T ss_pred ----CC-ceEEEEEcCCceEEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEc-CCCeEEEEecCeEEEEECCCCeEEE
Confidence 12 899999999999999984 567777434 99999999999999 689999999999999973 34778
Q ss_pred EEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCcccccCCCceEEEEe
Q 000548 642 DLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTL 712 (1431)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~I~~as~~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l 712 (1431)
+|.++ .+..|++|+++++|++|++++|++.+|+++......+......+. ...+|+|+++
T Consensus 442 ~w~~~----------~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eis~l~i 501 (504)
T PF10433_consen 442 EWKPP----------AGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILE-LDNEISCLSI 501 (504)
T ss_dssp EEE-T----------TS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE--SS-EEEEE-
T ss_pred EEeCC----------CCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeecccccc-CCCceEEEEe
Confidence 89884 566899999999999999999999999987654333322221111 3788999875
No 6
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=100.00 E-value=1.8e-51 Score=485.26 Aligned_cols=317 Identities=33% Similarity=0.610 Sum_probs=259.7
Q ss_pred eEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccc-eeEEEEEEeecCCC
Q 000548 1062 EYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR-GRVLLFSTGRNADN 1140 (1431)
Q Consensus 1062 ~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~-Gri~vf~i~~~~~~ 1140 (1431)
+++|+|+|+ .+|+++++|+|++||+++|++.++|....+ +.++||||||++..+|+..++ |||++|++.+.+.
T Consensus 1 ~s~i~l~d~----~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~-~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~- 74 (321)
T PF03178_consen 1 ASSIRLVDP----TTFEVLDSFELEPNEHVTSLCSVKLKGDST-GKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE- 74 (321)
T ss_dssp --EEEEEET----TTSSEEEEEEEETTEEEEEEEEEEETTS----SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred CcEEEEEeC----CCCeEEEEEECCCCceEEEEEEEEEcCccc-cccCEEEEEecccccccccccCcEEEEEEEEcccc-
Confidence 368999998 589999999999999999999999974222 358999999999999987666 9999999987421
Q ss_pred CCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCe-eeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEE
Q 000548 1141 PQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTE-LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYF 1219 (1431)
Q Consensus 1141 ~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~-L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~l 1219 (1431)
...+|+++++++++|+|+||+.++|+|++|+|++|++|+|+.++ |.++|+++. +.++++|.+.+|+|+|||+++|+++
T Consensus 75 ~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~-~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 75 NNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDS-PFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp ---EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-B-SSSEEEEEEETTEEEEEESSSSEEE
T ss_pred cceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecc-eEEEEEEeccccEEEEEEcccCEEE
Confidence 13479999999999999999999999999999999999999888 999999999 9999999999999999999999999
Q ss_pred EEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCc-eEEEEEEEecCcceeEEE
Q 000548 1220 LSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQ-KLLSRAEFHVGAHVTKFL 1298 (1431)
Q Consensus 1220 l~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~-~L~~~~~fhlg~~vt~~~ 1298 (1431)
++|++++++|.++|||+.++|+++++|+.|++. ++++|++|||++|+++|++.++.+++ +|+..++||+|+.||+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~--~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDT--IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE--EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcE--EEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 999998889999999999999999998668865 99999999999999999999889888 999999999999999999
Q ss_pred EEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEe-CChHhHHHHHHHHHHHHhcCCCCCCCCcccccccccCCC
Q 000548 1299 RLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAP-LDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGK 1377 (1431)
Q Consensus 1299 ~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~p-l~e~~~~~L~~Lq~~l~~~~~~~~Gl~~~~~R~~~~~~~ 1377 (1431)
++++.+...+ .+....+.++|+|.+|+||+++| +++++|++|..||+.|.+.+++++|++|++||++++. +
T Consensus 232 ~~~l~~~~~~-------~~~~~~~~i~~~T~~G~Ig~l~p~l~~~~~~~L~~lQ~~l~~~~~~~~gl~~~~~R~~~~~-~ 303 (321)
T PF03178_consen 232 RGSLIPRSGS-------SESPNRPQILYGTVDGSIGVLIPFLSEEEYRFLQALQNNLRKHIPSLGGLNPRSFRSYKNP-R 303 (321)
T ss_dssp E--SS--SSS-------S-TTEEEEEEEEETTS-EEEEEE-E-HHHHHHHHHHHHHHHHHS--TTS--HHHHTSEEES-E
T ss_pred EEEeeecCCC-------CcccccceEEEEecCCEEEEEEecCCHHHHHHHHHHHHHHHhhCCCCccCChHHhccccCc-c
Confidence 9887773101 00113578999999999999999 8999999999999999999999999999999999755 2
Q ss_pred CCCCCCCCceeHHHHHHHcC
Q 000548 1378 AHRPGPDSIVDCELLSHYEM 1397 (1431)
Q Consensus 1378 ~~~~~~~~~IDGDlie~fl~ 1397 (1431)
. ..+++||||||||+|++
T Consensus 304 ~--~~~~~~iDgdll~~fl~ 321 (321)
T PF03178_consen 304 M--KRSKGFIDGDLLEQFLE 321 (321)
T ss_dssp E--E--BSEEEHHHHHGGGG
T ss_pred c--cCCCccCcHHHHHHhhC
Confidence 1 12799999999999985
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.45 E-value=0.0057 Score=72.11 Aligned_cols=140 Identities=23% Similarity=0.329 Sum_probs=100.0
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cC-eEEEE-eCCeEEEEEccCC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QG-HLLIA-SGPKIILHKWTGT 1183 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g-~Ll~~-vg~~l~v~~~~~~ 1183 (1431)
.+.+++||- ..|.+++|.+... ...+..-..+.+|+|+++.-- +| ||+++ ...++.+|+...+
T Consensus 454 ~~~~vaVGG---------~Dgkvhvysl~g~-----~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 454 DGSEVAVGG---------QDGKVHVYSLSGD-----ELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred CCCEEEEec---------ccceEEEEEecCC-----cccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccC
Confidence 467899996 3688999999752 223445567889999999843 44 45444 3578999999876
Q ss_pred ee--eeeEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEe
Q 000548 1184 EL--NGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD 1259 (1431)
Q Consensus 1184 ~L--~~~a~~~~~~~~i~~l~~~--~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D 1259 (1431)
+. .+-+|+.. -|.++... ..++.-|-+-..|.++..+. +.+- ..+++.++..|+.+.| +|+++ ++.+-
T Consensus 520 ~~~~~~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~k-P~~~-i~iknAH~~gVn~v~w-lde~t--vvSsG 591 (603)
T KOG0318|consen 520 EVKTNRWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKK-PAKH-IIIKNAHLGGVNSVAW-LDEST--VVSSG 591 (603)
T ss_pred ceecceeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccC-hhhh-eEeccccccCceeEEE-ecCce--EEecc
Confidence 54 33444444 45555544 34677788888888887753 2233 7789999999999997 79999 78888
Q ss_pred CCCcEEEEe
Q 000548 1260 EQKNIQIFY 1268 (1431)
Q Consensus 1260 ~~gNl~vl~ 1268 (1431)
.+.||.+..
T Consensus 592 ~Da~iK~W~ 600 (603)
T KOG0318|consen 592 QDANIKVWN 600 (603)
T ss_pred CcceeEEec
Confidence 888887764
No 8
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=0.0067 Score=73.63 Aligned_cols=163 Identities=18% Similarity=0.167 Sum_probs=101.0
Q ss_pred eeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee-cCceE
Q 000548 1080 RATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL-KGAIS 1158 (1431)
Q Consensus 1080 ~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~-~g~V~ 1158 (1431)
+..+.+++.|.+.|.++.. ....|++||.. |+.+|++..++. .|.+.+-.... .-++.
T Consensus 374 Llkl~~k~~~nIs~~aiSP--------dg~~Ia~st~~----------~~~iy~L~~~~~---vk~~~v~~~~~~~~~a~ 432 (691)
T KOG2048|consen 374 LLKLFTKEKENISCAAISP--------DGNLIAISTVS----------RTKIYRLQPDPN---VKVINVDDVPLALLDAS 432 (691)
T ss_pred heeeecCCccceeeeccCC--------CCCEEEEeecc----------ceEEEEeccCcc---eeEEEeccchhhhccce
Confidence 4456677888888877542 45799999954 778888876531 12222221111 11222
Q ss_pred EEc--cccCeEEEEe-C-CeEEEEEccC---CeeeeeEeecCCCeeEEEEE--EeCCEEEEEeccccEEEEEEeccccEE
Q 000548 1159 ALA--SLQGHLLIAS-G-PKIILHKWTG---TELNGIAFYDAPPLYVVSLN--IVKNFILLGDIHKSIYFLSWKEQGAQL 1229 (1431)
Q Consensus 1159 al~--~~~g~Ll~~v-g-~~l~v~~~~~---~~L~~~a~~~~~~~~i~~l~--~~~~~IlvGD~~~Sv~ll~~~~~~~~l 1229 (1431)
++. .-+++++.+. + -.+.+++++. ++|...+.... ..+|+.|. ..||+|++.+-...|.++ +-+..+.
T Consensus 433 ~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~-~~~I~~l~~SsdG~yiaa~~t~g~I~v~--nl~~~~~ 509 (691)
T KOG2048|consen 433 AISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAK-CPSISRLVVSSDGNYIAAISTRGQIFVY--NLETLES 509 (691)
T ss_pred eeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccC-CCcceeEEEcCCCCEEEEEeccceEEEE--Eccccee
Confidence 222 2244544443 3 2445555542 45665555433 33555554 479999999977777665 4456666
Q ss_pred EEeeeccCCccEEEEEEE-ecCCeeEEEEEeCCCcEEEEee
Q 000548 1230 NLLAKDFGSLDCFATEFL-IDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1230 ~~~arD~~~~~vta~~fl-~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
..+.-+.. ..||++.|. .+.++ +++++.++-++-|..
T Consensus 510 ~~l~~rln-~~vTa~~~~~~~~~~--lvvats~nQv~efdi 547 (691)
T KOG2048|consen 510 HLLKVRLN-IDVTAAAFSPFVRNR--LVVATSNNQVFEFDI 547 (691)
T ss_pred ecchhccC-cceeeeeccccccCc--EEEEecCCeEEEEec
Confidence 77776666 889999986 45667 788999999988876
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.10 E-value=0.94 Score=53.84 Aligned_cols=162 Identities=11% Similarity=0.095 Sum_probs=93.1
Q ss_pred ceeEEEEEEeecCCCCCccEEE----EEEEeecCceEEEc--cccCeEEEEe--CCeEEEEEccC--CeeeeeEeecCC-
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTE----VYSKELKGAISALA--SLQGHLLIAS--GPKIILHKWTG--TELNGIAFYDAP- 1194 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~l----v~~~~~~g~V~al~--~~~g~Ll~~v--g~~l~v~~~~~--~~L~~~a~~~~~- 1194 (1431)
.++|.+|++... ..++. ....+....+..+. .-..+|+++. .++|.+|+++. .++........+
T Consensus 147 ~~~v~v~d~~~~-----g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 147 EDRIRLFTLSDD-----GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CCEEEEEEECCC-----CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 679999999642 11211 11112222333333 2223555553 58999999974 344332222211
Q ss_pred -----CeeEEE--EEEeCCEEEEEec-cccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEE
Q 000548 1195 -----PLYVVS--LNIVKNFILLGDI-HKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQI 1266 (1431)
Q Consensus 1195 -----~~~i~~--l~~~~~~IlvGD~-~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~v 1266 (1431)
+.+... ++..+.++++++. ..+|.++.++.+...+..++.-....+..++.|-.|+..| +++...++.|.+
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l-~va~~~~~~v~v 300 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYL-IAAGQKSHHISV 300 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEE-EEEEccCCcEEE
Confidence 223323 3345679999986 4789999887766666655553322223344543567774 344445889999
Q ss_pred EeeCCCCCCCccCceEEEEEEEecCcceeEEEE
Q 000548 1267 FYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR 1299 (1431)
Q Consensus 1267 l~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~ 1299 (1431)
|+.+++. ..|.....+.+|..++++.-
T Consensus 301 ~~~~~~~------g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 301 YEIDGET------GLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEcCCC------CcEEEccccccCCCceEEEE
Confidence 9887543 24777778888988888764
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.69 E-value=1.5 Score=49.10 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=80.5
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC--eEEEEe-CCeEEEEEccCCe
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG--HLLIAS-GPKIILHKWTGTE 1184 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g--~Ll~~v-g~~l~v~~~~~~~ 1184 (1431)
..++++|+ ..|.|++|++... ..+..+. ...+++++++-..+ +|+++. ...|.+|++...+
T Consensus 147 ~~~l~~~~---------~~~~i~i~d~~~~-----~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 147 GTFVASSS---------QDGTIKLWDLRTG-----KCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred CCEEEEEc---------CCCcEEEEEcccc-----ccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 45777665 3688999998631 1122111 34567888875443 565554 5789999998654
Q ss_pred eeeeEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCC
Q 000548 1185 LNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQK 1262 (1431)
Q Consensus 1185 L~~~a~~~~~~~~i~~l~~~--~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~g 1262 (1431)
+...- ... ...+.++... +.+++.|+.-..+.++.... ...+..+. .....++++.|--+++. ++++..+|
T Consensus 211 ~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~--l~~~~~d~ 283 (289)
T cd00200 211 CLGTL-RGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-GECVQTLS--GHTNSVTSLAWSPDGKR--LASGSADG 283 (289)
T ss_pred eecch-hhc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC-ceeEEEcc--ccCCcEEEEEECCCCCE--EEEecCCC
Confidence 43322 122 3345555554 46777777677787776542 12222222 33446888886434344 67788888
Q ss_pred cEEEE
Q 000548 1263 NIQIF 1267 (1431)
Q Consensus 1263 Nl~vl 1267 (1431)
.+.++
T Consensus 284 ~i~iw 288 (289)
T cd00200 284 TIRIW 288 (289)
T ss_pred eEEec
Confidence 88775
No 11
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.54 E-value=0.3 Score=57.96 Aligned_cols=144 Identities=14% Similarity=0.128 Sum_probs=102.2
Q ss_pred CeEEEEeC-----------CeEEEEEccCC-----eeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccE
Q 000548 1165 GHLLIASG-----------PKIILHKWTGT-----ELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQ 1228 (1431)
Q Consensus 1165 g~Ll~~vg-----------~~l~v~~~~~~-----~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~ 1228 (1431)
.+|++|.+ .+|++|++.+. +|..++..+. +..|++|...++++++|- -..|.+++++... +
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~-~ 119 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV-KGPVTAICSFNGRLVVAV-GNKLYVYDLDNSK-T 119 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE-SS-EEEEEEETTEEEEEE-TTEEEEEEEETTS-S
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee-cCcceEhhhhCCEEEEee-cCEEEEEEccCcc-c
Confidence 46778776 67999999873 7888877777 778999999999966654 4778888887554 6
Q ss_pred EEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCC
Q 000548 1229 LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSD 1308 (1431)
Q Consensus 1229 l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~ 1308 (1431)
|...|.=..+..++++. ..++. ++++|....+++++|+++ +++|...+.=.-.-.+++..- ...
T Consensus 120 l~~~~~~~~~~~i~sl~--~~~~~--I~vgD~~~sv~~~~~~~~------~~~l~~va~d~~~~~v~~~~~---l~d--- 183 (321)
T PF03178_consen 120 LLKKAFYDSPFYITSLS--VFKNY--ILVGDAMKSVSLLRYDEE------NNKLILVARDYQPRWVTAAEF---LVD--- 183 (321)
T ss_dssp EEEEEEE-BSSSEEEEE--EETTE--EEEEESSSSEEEEEEETT------TE-EEEEEEESS-BEEEEEEE---E-S---
T ss_pred chhhheecceEEEEEEe--ccccE--EEEEEcccCEEEEEEEcc------CCEEEEEEecCCCccEEEEEE---ecC---
Confidence 88888877777888887 34566 899999999999999874 345777665444444554432 211
Q ss_pred CCCCCCCCCCCCceEEEEEcCCCcEEEEEeC
Q 000548 1309 RTGAAPGSDKTNRFALLFGTLDGSIGCIAPL 1339 (1431)
Q Consensus 1309 ~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl 1339 (1431)
...++.+..+|.+..+..-
T Consensus 184 ------------~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 184 ------------EDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ------------SSEEEEEETTSEEEEEEE-
T ss_pred ------------CcEEEEEcCCCeEEEEEEC
Confidence 1268888889988766654
No 12
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=0.34 Score=61.38 Aligned_cols=122 Identities=13% Similarity=0.214 Sum_probs=77.0
Q ss_pred CCceEEEeeccCCCCCceEEEEE-ecCeEEEEEcCCCCc---cCCCcceEEeeCCCcccEEEEecCCCeEEEEEeecccc
Q 000548 951 DGSIVAFTVLHNVNCNHGFIYVT-SQGILKICQLPSGST---YDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLK 1026 (1431)
Q Consensus 951 ~~~v~~~~~f~~~~~~~g~i~~~-~~~~L~I~~l~~~~~---~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~s~~~~~ 1026 (1431)
+.+|.+++=+.+ +-|+++. -+|.++|-.+.+..- +..-.+....-+.+...++++||.+..+++.+.+
T Consensus 138 ~apVl~l~~~p~----~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d---- 209 (933)
T KOG1274|consen 138 DAPVLQLSYDPK----GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD---- 209 (933)
T ss_pred CCceeeeeEcCC----CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC----
Confidence 567777643222 2244443 368899988886421 1122222223334556788999999999886431
Q ss_pred cccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCC
Q 000548 1027 PLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKE 1106 (1431)
Q Consensus 1027 ~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~ 1106 (1431)
.+|+++++ .+|+..-.+..+..+.. +..+.|. .
T Consensus 210 ------------------------------------~~Vkvy~r----~~we~~f~Lr~~~~ss~--~~~~~ws-----P 242 (933)
T KOG1274|consen 210 ------------------------------------NTVKVYSR----KGWELQFKLRDKLSSSK--FSDLQWS-----P 242 (933)
T ss_pred ------------------------------------CeEEEEcc----CCceeheeecccccccc--eEEEEEc-----C
Confidence 25778887 48988665555555555 4445554 3
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEee
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGR 1136 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~ 1136 (1431)
...||+-|| ..|.|+||++..
T Consensus 243 nG~YiAAs~---------~~g~I~vWnv~t 263 (933)
T KOG1274|consen 243 NGKYIAAST---------LDGQILVWNVDT 263 (933)
T ss_pred CCcEEeeec---------cCCcEEEEeccc
Confidence 467999998 589999999973
No 13
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.12 Score=57.69 Aligned_cols=205 Identities=17% Similarity=0.203 Sum_probs=118.6
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeE-EEE-eCCeEEEEEccCC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHL-LIA-SGPKIILHKWTGT 1183 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g~L-l~~-vg~~l~v~~~~~~ 1183 (1431)
-..|++||++ .||+.+|++.. +++-.+. ...--||+++|-- +|++ |.+ -..++.+|++-+.
T Consensus 34 ~G~~lAvGc~---------nG~vvI~D~~T------~~iar~l-saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 34 WGDYLAVGCA---------NGRVVIYDFDT------FRIARML-SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred Ccceeeeecc---------CCcEEEEEccc------cchhhhh-hccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 4579999995 89999999974 1111111 1123478888843 5654 433 3478999999876
Q ss_pred eeeeeEeecCCCeeEEEEEEeC-CEEEEEeccccEEEEEEeccccEEEEeeeccC-CccEE-EEEEEecCCeeEEEEEeC
Q 000548 1184 ELNGIAFYDAPPLYVVSLNIVK-NFILLGDIHKSIYFLSWKEQGAQLNLLAKDFG-SLDCF-ATEFLIDGSTLSLVVSDE 1260 (1431)
Q Consensus 1184 ~L~~~a~~~~~~~~i~~l~~~~-~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~-~~~vt-a~~fl~d~~~l~~i~~D~ 1260 (1431)
.++..-.++. |+.-.+....+ |..++.=+.+|-.++.|.. .+-..++.|.. ....+ +..+ .|..-=+|+++-.
T Consensus 98 s~l~rirf~s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~-fdr~g~yIitGts 173 (405)
T KOG1273|consen 98 SPLKRIRFDS-PVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGV-FDRRGKYIITGTS 173 (405)
T ss_pred CceeEEEccC-ccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccccccccccc-ccCCCCEEEEecC
Confidence 6555445566 66655666555 5666666667888887764 34445555432 23333 2222 2332223889999
Q ss_pred CCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEE--EEe
Q 000548 1261 QKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGC--IAP 1338 (1431)
Q Consensus 1261 ~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~--l~p 1338 (1431)
.|-|.++.. ..|++++.|++-. ++.+...-+... ...+++-|.+-.|-. +..
T Consensus 174 KGkllv~~a----------~t~e~vas~rits-~~~IK~I~~s~~---------------g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 174 KGKLLVYDA----------ETLECVASFRITS-VQAIKQIIVSRK---------------GRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cceEEEEec----------chheeeeeeeech-heeeeEEEEecc---------------CcEEEEecCCceEEEEehhh
Confidence 999999852 3468889988765 333433222111 245666666666522 222
Q ss_pred CCh----HhHHHHHHHHHHHHhc
Q 000548 1339 LDE----LTFRRLQSLQKKLVDS 1357 (1431)
Q Consensus 1339 l~e----~~~~~L~~Lq~~l~~~ 1357 (1431)
+.. -+....+++|..+.+.
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhh
Confidence 211 1333456777766653
No 14
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=2.3 Score=48.15 Aligned_cols=152 Identities=11% Similarity=0.216 Sum_probs=89.0
Q ss_pred CceEEEEEecCeEEEEEcCCCCccCCCcceEEeeCCC----cccEEEEecCCCeEEEEEeeccccccccccccccccccc
Q 000548 966 NHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKA----TPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVG 1041 (1431)
Q Consensus 966 ~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~----tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~ 1041 (1431)
|.|.+++...++. ..+|-+..++|.. |-+++.+.. .-..|-|+|..+..++.+.
T Consensus 150 p~GLifA~~~~~~-~IkLyD~Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-------------------- 207 (311)
T KOG1446|consen 150 PEGLIFALANGSE-LIKLYDLRSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-------------------- 207 (311)
T ss_pred CCCcEEEEecCCC-eEEEEEecccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEeC--------------------
Confidence 3676666554443 2222333445433 555555552 3567888888888777432
Q ss_pred ccccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCC
Q 000548 1042 HQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGE 1121 (1431)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e 1121 (1431)
.+.+.++|...+ ..+.+++..+++.-+.+.. .|. ....||+.|.
T Consensus 208 --------------------~s~~~~lDAf~G----~~~~tfs~~~~~~~~~~~a-~ft-----Pds~Fvl~gs------ 251 (311)
T KOG1446|consen 208 --------------------ASFIYLLDAFDG----TVKSTFSGYPNAGNLPLSA-TFT-----PDSKFVLSGS------ 251 (311)
T ss_pred --------------------CCcEEEEEccCC----cEeeeEeeccCCCCcceeE-EEC-----CCCcEEEEec------
Confidence 123557776543 4677788887776444332 232 2346777765
Q ss_pred CcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC-e-EEEEeCCeEEEEEccCCee
Q 000548 1122 DVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG-H-LLIASGPKIILHKWTGTEL 1185 (1431)
Q Consensus 1122 ~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g-~-Ll~~vg~~l~v~~~~~~~L 1185 (1431)
..|+|++|.+... +........--|++.++. ||- + .+++...+|..|-....++
T Consensus 252 ---~dg~i~vw~~~tg------~~v~~~~~~~~~~~~~~~-fnP~~~mf~sa~s~l~fw~p~~~~~ 307 (311)
T KOG1446|consen 252 ---DDGTIHVWNLETG------KKVAVLRGPNGGPVSCVR-FNPRYAMFVSASSNLVFWLPDEDAL 307 (311)
T ss_pred ---CCCcEEEEEcCCC------cEeeEecCCCCCCccccc-cCCceeeeeecCceEEEEecccccc
Confidence 4799999999431 122222233457777777 764 2 4566678888887775544
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.13 E-value=3.1 Score=46.56 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=82.4
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-Ce-EEEEe-CCeEEEEEccCCe
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-GH-LLIAS-GPKIILHKWTGTE 1184 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~-g~-Ll~~v-g~~l~v~~~~~~~ 1184 (1431)
..++++|. ..|.+.+|++... .....+. ...++|++++-.. +. |+++. +..|++|++...+
T Consensus 105 ~~~~~~~~---------~~~~i~~~~~~~~-----~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSS---------RDKTIKVWDVETG-----KCLTTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEec---------CCCeEEEEECCCc-----EEEEEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 35666654 3689999998631 1111111 3566788887554 44 44554 6889999997554
Q ss_pred eeeeEeecCCCeeEEEEEEeC--CEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCC
Q 000548 1185 LNGIAFYDAPPLYVVSLNIVK--NFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQK 1262 (1431)
Q Consensus 1185 L~~~a~~~~~~~~i~~l~~~~--~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~g 1262 (1431)
+...- ... ...+.++.... +.+++|..-..+.++..+ ..+....-+ .....++++.|..+ +.+ +++++.+|
T Consensus 169 ~~~~~-~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~-~~~~~i~~~~~~~~-~~~-~~~~~~~~ 241 (289)
T cd00200 169 CVATL-TGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS--TGKCLGTLR-GHENGVNSVAFSPD-GYL-LASGSEDG 241 (289)
T ss_pred cceeE-ecC-ccccceEEECCCcCEEEEecCCCcEEEEECC--CCceecchh-hcCCceEEEEEcCC-CcE-EEEEcCCC
Confidence 33221 122 23555666544 488888876777776543 222222211 23447888886434 443 67777799
Q ss_pred cEEEEeeC
Q 000548 1263 NIQIFYYA 1270 (1431)
Q Consensus 1263 Nl~vl~~~ 1270 (1431)
.+.++...
T Consensus 242 ~i~i~~~~ 249 (289)
T cd00200 242 TIRVWDLR 249 (289)
T ss_pred cEEEEEcC
Confidence 99999754
No 16
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.87 E-value=1.9 Score=57.92 Aligned_cols=144 Identities=17% Similarity=0.113 Sum_probs=85.3
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC-eEEEEe-CCeEEEEEccCC--
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG-HLLIAS-GPKIILHKWTGT-- 1183 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g-~Ll~~v-g~~l~v~~~~~~-- 1183 (1431)
..++++|.. .|.|++|++.... ..+.. .....++|+++.-.++ +|+++. ...|.+|++...
T Consensus 630 g~~latgs~---------dg~I~iwD~~~~~----~~~~~--~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 630 GRSLAFGSA---------DHKVYYYDLRNPK----LPLCT--MIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred CCEEEEEeC---------CCeEEEEECCCCC----ccceE--ecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc
Confidence 468888873 7899999986421 11211 1235678888876555 444443 368999998632
Q ss_pred ----eeee-eEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEE----------eeeccCCccEEEEEEEe
Q 000548 1184 ----ELNG-IAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNL----------LAKDFGSLDCFATEFLI 1248 (1431)
Q Consensus 1184 ----~L~~-~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~----------~arD~~~~~vta~~fl~ 1248 (1431)
+.+. ..-+.. ....++....+++|++|..-+.|.++........+.. +.-+....+|.++.|-.
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 1111 111122 3334455556789999988888877653221111100 01122345688898755
Q ss_pred cCCeeEEEEEeCCCcEEEEee
Q 000548 1249 DGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1249 d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+... ++++..+|+|.++++
T Consensus 774 ~~~~--lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSST--LVAANSTGNIKILEM 792 (793)
T ss_pred CCCe--EEEecCCCcEEEEec
Confidence 5555 789999999999864
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.85 E-value=0.76 Score=57.83 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=97.3
Q ss_pred eEEEEEEeecCCCCCccEEEEEEE-eecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCC
Q 000548 1128 RVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKN 1206 (1431)
Q Consensus 1128 ri~vf~i~~~~~~~~~~l~lv~~~-~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~ 1206 (1431)
.+.+|++. ||.+++-- ++..-|+|+++...+..+|.|++|++|.-++. -++++....--|.-+..+|+
T Consensus 57 sfqvYd~~--------kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~---i~~~~~~~~a~v~~l~~fGe 125 (910)
T KOG1539|consen 57 SFQVYDVN--------KLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAYARGKH---IRHTTLLHGAKVHLLLPFGE 125 (910)
T ss_pred eEEEEecc--------ceEEEEecCCCCCceEEEEecCceEEEecCcEEEEEEccce---EEEEeccccceEEEEeeecc
Confidence 45677774 58777754 78999999999999999999999999998754 22333330236777888999
Q ss_pred EEEEEeccccEEEEEEec--cc-c---EEEEeeeccCCccEEEEEEEecC-CeeEEEEEeCCCcEEEEeeCCCCCCCccC
Q 000548 1207 FILLGDIHKSIYFLSWKE--QG-A---QLNLLAKDFGSLDCFATEFLIDG-STLSLVVSDEQKNIQIFYYAPKMSESWKG 1279 (1431)
Q Consensus 1207 ~IlvGD~~~Sv~ll~~~~--~~-~---~l~~~arD~~~~~vta~~fl~d~-~~l~~i~~D~~gNl~vl~~~p~~~~s~~~ 1279 (1431)
.++.+|+...+.+.+... ++ + .+...-.| .+|++...--+ |. ++++-..|++.++.... +
T Consensus 126 ~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~----~Ital~HP~TYLNK--IvvGs~~G~lql~Nvrt-------~ 192 (910)
T KOG1539|consen 126 HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGD----FITALLHPSTYLNK--IVVGSSQGRLQLWNVRT-------G 192 (910)
T ss_pred eEEEEEccCcEEEEEeccccccccccceeeeccCC----ceeeEecchhheee--EEEeecCCcEEEEEecc-------C
Confidence 999999999999998764 11 1 12222222 25665532111 45 78889999999987542 1
Q ss_pred ceEEEE-EEEecCcceeEEEE
Q 000548 1280 QKLLSR-AEFHVGAHVTKFLR 1299 (1431)
Q Consensus 1280 ~~L~~~-~~fhlg~~vt~~~~ 1299 (1431)
|+... .+|. +.||++.+
T Consensus 193 -K~v~~f~~~~--s~IT~ieq 210 (910)
T KOG1539|consen 193 -KVVYTFQEFF--SRITAIEQ 210 (910)
T ss_pred -cEEEEecccc--cceeEecc
Confidence 23222 2333 77777654
No 18
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.75 E-value=6.2 Score=46.83 Aligned_cols=255 Identities=12% Similarity=0.075 Sum_probs=134.2
Q ss_pred EEEEEe--cCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEEEeecccccccccccccccccccccccC
Q 000548 969 FIYVTS--QGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDN 1046 (1431)
Q Consensus 969 ~i~~~~--~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~ 1046 (1431)
++|++. ++++++..+... +..-.+++++.+..|..++++|+.+.+++++.. ..
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~---g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-----~~----------------- 57 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHE---GALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-----EF----------------- 57 (330)
T ss_pred EEEEEcCCCCCEEEEEECCC---CceeeeeEEecCCCCccEEECCCCCEEEEEECC-----CC-----------------
Confidence 455553 356777777532 122356778888899999999998877664321 00
Q ss_pred CCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccc
Q 000548 1047 HNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAAR 1126 (1431)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~ 1126 (1431)
.|..++... ...++.+..+.... .+. -+.+. ....++.++.- ..
T Consensus 58 -----------------~i~~~~~~~-~g~l~~~~~~~~~~--~p~---~i~~~-----~~g~~l~v~~~--------~~ 101 (330)
T PRK11028 58 -----------------RVLSYRIAD-DGALTFAAESPLPG--SPT---HISTD-----HQGRFLFSASY--------NA 101 (330)
T ss_pred -----------------cEEEEEECC-CCceEEeeeecCCC--Cce---EEEEC-----CCCCEEEEEEc--------CC
Confidence 111111110 12333333333322 122 22332 23345655531 26
Q ss_pred eeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cC-eEEE-EeC-CeEEEEEccC-Ceeeee----EeecCCCee
Q 000548 1127 GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QG-HLLI-ASG-PKIILHKWTG-TELNGI----AFYDAPPLY 1197 (1431)
Q Consensus 1127 Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g-~Ll~-~vg-~~l~v~~~~~-~~L~~~----a~~~~~~~~ 1197 (1431)
|+|.+|++.+... . .+.+...+....++++.-- +| +|++ ..+ ++|.+|+++. +.|.+. ..... ...
T Consensus 102 ~~v~v~~~~~~g~-~---~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~ 176 (330)
T PRK11028 102 NCVSVSPLDKDGI-P---VAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAG 176 (330)
T ss_pred CeEEEEEECCCCC-C---CCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCC
Confidence 8999999964211 0 1122211211234443311 34 5544 334 7899999975 334321 01111 111
Q ss_pred EE--EEEEeCCEEEEEec-cccEEEEEEeccccEEEEee------ec-cCCccEEEEEEEecCCeeEEEEEeC-CCcEEE
Q 000548 1198 VV--SLNIVKNFILLGDI-HKSIYFLSWKEQGAQLNLLA------KD-FGSLDCFATEFLIDGSTLSLVVSDE-QKNIQI 1266 (1431)
Q Consensus 1198 i~--~l~~~~~~IlvGD~-~~Sv~ll~~~~~~~~l~~~a------rD-~~~~~vta~~fl~d~~~l~~i~~D~-~gNl~v 1266 (1431)
.. .++..+.+++|.+. -.+|.++.++...+++..+. .+ ..++|..++.|-.|++. +.+++. .+.|.+
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~--lyv~~~~~~~I~v 254 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH--LYACDRTASLISV 254 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE--EEEecCCCCeEEE
Confidence 22 33445669989887 67889998875444443321 11 24567666665456666 455666 567888
Q ss_pred EeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000548 1267 FYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1297 (1431)
Q Consensus 1267 l~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~ 1297 (1431)
+.++++ +.++...+.+..|..+..+
T Consensus 255 ~~i~~~------~~~~~~~~~~~~~~~p~~~ 279 (330)
T PRK11028 255 FSVSED------GSVLSFEGHQPTETQPRGF 279 (330)
T ss_pred EEEeCC------CCeEEEeEEEeccccCCce
Confidence 887653 3456677777777555544
No 19
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.65 E-value=5.2 Score=45.28 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=80.1
Q ss_pred EEEEecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCC
Q 000548 970 IYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNL 1049 (1431)
Q Consensus 970 i~~~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~ 1049 (1431)
++.+++..+.|..|.. ++..+..|.-+|.+..|.|+..|+..-|++.+.. ...-.+ ..|..
T Consensus 149 vVg~~~r~v~iyDLRn---~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie---GRVavE---~~d~s---------- 209 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRN---LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE---GRVAVE---YFDDS---------- 209 (323)
T ss_pred EEeecCceEEEEEccc---ccchhhhccccceeEEEEEEEecCCCceEEEeec---ceEEEE---ccCCc----------
Confidence 3335555666666554 4556788888999999999999988888875432 111000 00110
Q ss_pred CccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeE
Q 000548 1050 SSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRV 1129 (1431)
Q Consensus 1050 ~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri 1129 (1431)
++.+ ..+|.++.= .-....-|.+..+-.+.|. .....++=|- +.|.+
T Consensus 210 --~~~~----skkyaFkCH-------------r~~~~~~~~~yPVNai~Fh-----p~~~tfaTgG---------sDG~V 256 (323)
T KOG1036|consen 210 --EEAQ----SKKYAFKCH-------------RLSEKDTEIIYPVNAIAFH-----PIHGTFATGG---------SDGIV 256 (323)
T ss_pred --hHHh----hhceeEEee-------------ecccCCceEEEEeceeEec-----cccceEEecC---------CCceE
Confidence 0000 012222221 1112344566666666664 1223344443 57999
Q ss_pred EEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEe
Q 000548 1130 LLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIAS 1171 (1431)
Q Consensus 1130 ~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~v 1171 (1431)
.+|+... +++|+.+|+.+..=+..+++.-...|.+|.
T Consensus 257 ~~Wd~~~-----rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 257 NIWDLFN-----RKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EEccCcc-----hhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 9999864 246899998855555555554444555553
No 20
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.30 E-value=13 Score=47.52 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=87.6
Q ss_pred eeeEECCCC------CceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee
Q 000548 1080 RATIPMQSS------ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL 1153 (1431)
Q Consensus 1080 ~~~~~l~~~------E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~ 1153 (1431)
+..|.|+++ -.++|+++- . =..|.+||+ ++|-|=+|.+...-. +-..--+...
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs-~-------CGNF~~IG~---------S~G~Id~fNmQSGi~----r~sf~~~~ah 492 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVS-F-------CGNFVFIGY---------SKGTIDRFNMQSGIH----RKSFGDSPAH 492 (910)
T ss_pred cccEEecCccccccCcceEEEEEe-c-------cCceEEEec---------cCCeEEEEEcccCee----ecccccCccc
Confidence 456666666 444554431 1 125899998 489999998864210 0011012357
Q ss_pred cCceEEEcc-ccCeEEEEeC--CeEEEEEccCCeeeeeEeecCCCeeEEEEEEe---CCEEEEEeccccEEEEEEecccc
Q 000548 1154 KGAISALAS-LQGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNIV---KNFILLGDIHKSIYFLSWKEQGA 1227 (1431)
Q Consensus 1154 ~g~V~al~~-~~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~---~~~IlvGD~~~Sv~ll~~~~~~~ 1227 (1431)
+++|+.++. .-++++++.| .-+..|+++++.|... ++. ...++.+... +=++++-|- -||.++ +....
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~--l~l-~~~~~~iv~hr~s~l~a~~~dd-f~I~vv--D~~t~ 566 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS--LRL-GSSITGIVYHRVSDLLAIALDD-FSIRVV--DVVTR 566 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeee--ecc-CCCcceeeeeehhhhhhhhcCc-eeEEEE--Echhh
Confidence 899999884 3356665555 4677899988765432 222 2233333322 222222221 233333 33222
Q ss_pred EEEEeeecc--CCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1228 QLNLLAKDF--GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1228 ~l~~~arD~--~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
+ +.|-+ +...+++..|-.|+.= ++.++.++.|+++..+
T Consensus 567 k---vvR~f~gh~nritd~~FS~DgrW--lisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 567 K---VVREFWGHGNRITDMTFSPDGRW--LISASMDSTIRTWDLP 606 (910)
T ss_pred h---hhHHhhccccceeeeEeCCCCcE--EEEeecCCcEEEEecc
Confidence 2 23333 3445888888445444 7788889999998753
No 21
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.17 E-value=3.4 Score=48.97 Aligned_cols=137 Identities=15% Similarity=0.252 Sum_probs=79.3
Q ss_pred CccEEEEEeeCCeEEEEEeeecCCCCCCCCCCCCCcccccccccccccccccceeEEeccCCccCCCCCCCCCCccceEE
Q 000548 837 SRPFLFAILTDGTILCYQAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITI 916 (1431)
Q Consensus 837 ~~~~L~vgl~~G~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rf~k~~~~~~~~~~~~~~~g~~~l~~ 916 (1431)
..|.|+++=-||.|-.|+++ +.. +.+...++|.+.|... . .
T Consensus 224 ~~plllvaG~d~~lrifqvD---Gk~---------------------N~~lqS~~l~~fPi~~------------a---~ 264 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVD---GKV---------------------NPKLQSIHLEKFPIQK------------A---E 264 (514)
T ss_pred CCceEEEecCCCcEEEEEec---Ccc---------------------ChhheeeeeccCccce------------e---e
Confidence 46777766678999999973 211 1123456777655321 1 1
Q ss_pred eeccCCceEEEEeCCCceEEEEe---CCceEEeeccCCCceEEEeeccCCCCCceEEEEEec-CeEEEEEcCCCCccCCC
Q 000548 917 FKNISGHQGFFLSGSRPCWCMVF---RERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQ-GILKICQLPSGSTYDNY 992 (1431)
Q Consensus 917 f~~~~g~~~Vf~~g~rP~~i~~~---~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~~-~~L~I~~l~~~~~~d~~ 992 (1431)
|. .+|.+.||..|.|+++-.+. ...-.++|+... +-.++-.|.-..|.+ ||.+... |.+.+...-. .
T Consensus 265 f~-p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~-e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT------~ 335 (514)
T KOG2055|consen 265 FA-PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV-EEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKT------K 335 (514)
T ss_pred ec-CCCceEEEecccceEEEEeeccccccccccCCCCc-ccchhheeEecCCCC-eEEEcccCceEEeehhhh------h
Confidence 22 26778999999999655443 233334555332 222344443223333 5665543 4455544433 3
Q ss_pred cceEEeeCCCcccEEEEecCCCeEEEEEe
Q 000548 993 WPVQKIPLKATPHQITYFAEKNLYPLIVS 1021 (1431)
Q Consensus 993 ~~ir~i~L~~tprki~y~~~~~~~~v~~s 1021 (1431)
-.+-++.+....+-++++.+++.+++++.
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcC
Confidence 36777888889999999988877776543
No 22
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=94.86 E-value=12 Score=44.99 Aligned_cols=157 Identities=16% Similarity=0.218 Sum_probs=91.9
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc-cccCe
Q 000548 1088 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA-SLQGH 1166 (1431)
Q Consensus 1088 ~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~-~~~g~ 1166 (1431)
||...+|+ +. ....||+||+- .+.||+|.|+.+. ++++.+-+..- .++++|. +.++.
T Consensus 447 ~~~ls~v~---ys-----p~G~~lAvgs~---------d~~iyiy~Vs~~g----~~y~r~~k~~g-s~ithLDwS~Ds~ 504 (626)
T KOG2106|consen 447 NEQLSVVR---YS-----PDGAFLAVGSH---------DNHIYIYRVSANG----RKYSRVGKCSG-SPITHLDWSSDSQ 504 (626)
T ss_pred CCceEEEE---Ec-----CCCCEEEEecC---------CCeEEEEEECCCC----cEEEEeeeecC-ceeEEeeecCCCc
Confidence 88877765 32 24579999994 6799999998742 45666655555 8888888 34565
Q ss_pred EEEEe--CCeEEEEEccCC-eeee------------eEeec-----CCCeeEEEEEEeCCEEEEEeccccEEEEEEeccc
Q 000548 1167 LLIAS--GPKIILHKWTGT-ELNG------------IAFYD-----APPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQG 1226 (1431)
Q Consensus 1167 Ll~~v--g~~l~v~~~~~~-~L~~------------~a~~~-----~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~ 1226 (1431)
.+.+. +-.|..|..... +... ..|.- .--.-+++-+-.++.+..||..--|.+++|-=..
T Consensus 505 ~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s 584 (626)
T KOG2106|consen 505 FLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS 584 (626)
T ss_pred eEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC
Confidence 55543 334555643321 1111 11110 0011111222246789999999999999984221
Q ss_pred cEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1227 AQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1227 ~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
-+-...-.--+.+.|+++.|+-++.. ++.+-++-.|+..+
T Consensus 585 ~rA~~he~~ghs~~vt~V~Fl~~d~~--li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 585 PRAPSHEYGGHSSHVTNVAFLCKDSH--LISTGKDTSIMQWR 624 (626)
T ss_pred CcccceeeccccceeEEEEEeeCCce--EEecCCCceEEEEE
Confidence 11111112235678999999766665 45555777776554
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.71 E-value=17 Score=45.95 Aligned_cols=308 Identities=13% Similarity=0.126 Sum_probs=162.0
Q ss_pred CCceEEEEeCCCceEEEEeCCceEEeeccCCCceEEEeeccCCCCCceEEEEEe--cCeEEEEEcCCCCccCCCcceEEe
Q 000548 921 SGHQGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTS--QGILKICQLPSGSTYDNYWPVQKI 998 (1431)
Q Consensus 921 ~g~~~Vf~~g~rP~~i~~~~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~--~~~L~I~~l~~~~~~d~~~~ir~i 998 (1431)
+|++.++=.|+|-.+.--.+++-...|+....+|..++- .|.|.+++.. +|...++.+.. ...+.++
T Consensus 25 dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ial-----Sp~g~lllavdE~g~~~lvs~~~------r~Vlh~f 93 (893)
T KOG0291|consen 25 DGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIAL-----SPDGTLLLAVDERGRALLVSLLS------RSVLHRF 93 (893)
T ss_pred CCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEe-----CCCceEEEEEcCCCcEEEEeccc------ceeeEEE
Confidence 466677777777766555555555566655556665543 4565544443 44555555554 4567777
Q ss_pred eCCCcccEEEEecCCCeEEEEEeecccccccccccccccccccc-----cccC--CCC-----CccccccccccceEEEE
Q 000548 999 PLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGH-----QIDN--HNL-----SSVDLHRTYTVEEYEVR 1066 (1431)
Q Consensus 999 ~L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~-----~~~~--~~~-----~~~~~~~~~~~~~~~v~ 1066 (1431)
.+..-...|.++|..+.++|++..-. .. ...|....++..+ .+-. +.+ +.+.+....-..-...|
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~gn~l--qi-w~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~r 170 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGCGNLL--QI-WHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSAR 170 (893)
T ss_pred eecCccceEEECCCCcEEEEEeccee--EE-EecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEE
Confidence 88888999999999999999876310 00 0000000001000 0000 000 00000000000111234
Q ss_pred EeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCC-------
Q 000548 1067 ILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNAD------- 1139 (1431)
Q Consensus 1067 lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~------- 1139 (1431)
|+... .|+-+..+.|.-+- ..+..|.|. .+..+.+.|+ ..|.|.+|++...|.
T Consensus 171 l~~v~----~~k~~~~~~l~gHk--d~VvacfF~----~~~~~l~tvs----------kdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 171 LFGVD----GNKNLFTYALNGHK--DYVVACFFG----ANSLDLYTVS----------KDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred EEEec----cccccceEeccCCC--cceEEEEec----cCcceEEEEe----------cCceEEEEEecCCCcccccccc
Confidence 44331 22222233332221 122223332 1223344443 589999999982110
Q ss_pred ------------CCCcc-----EEEEEEEee---cCceEEEccccC--eEEEEeCCeEE-EEEccCCeeeeeEe-ecCCC
Q 000548 1140 ------------NPQNL-----VTEVYSKEL---KGAISALASLQG--HLLIASGPKII-LHKWTGTELNGIAF-YDAPP 1195 (1431)
Q Consensus 1140 ------------~~~~~-----l~lv~~~~~---~g~V~al~~~~g--~Ll~~vg~~l~-v~~~~~~~L~~~a~-~~~~~ 1195 (1431)
+++.| .....+.-. ..-|+|..--.+ .|+++-.+-++ +|++.+-.|+-... -+. +
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~-~ 309 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ-K 309 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc-e
Confidence 01111 111111112 256777654444 45666666666 89998877665444 446 6
Q ss_pred eeEEEEEEeCCEEEEEecccc-EEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1196 LYVVSLNIVKNFILLGDIHKS-IYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1196 ~~i~~l~~~~~~IlvGD~~~S-v~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
+...++...||.|.+|-..-+ +-++.|+.+.+-|-. +-+...++++++-.|+.. ++.+-.+|-+-++.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ---QgH~~~i~~l~YSpDgq~--iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ---QGHSDRITSLAYSPDGQL--IATGAEDGKVKVWN 378 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeec---cccccceeeEEECCCCcE--EEeccCCCcEEEEe
Confidence 677777778999999987744 555667776665543 445566888887556555 66777788888774
No 24
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.54 E-value=11 Score=42.90 Aligned_cols=199 Identities=12% Similarity=0.178 Sum_probs=117.5
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc--cCeEEEE-eCCeEEEEEccCCe
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL--QGHLLIA-SGPKIILHKWTGTE 1184 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~--~g~Ll~~-vg~~l~v~~~~~~~ 1184 (1431)
..-+++|+ ..|.|..|+++-.+. .++ -...++|.+|+.. .|.+++| =+++|.+|+...+.
T Consensus 65 ~~~~~~G~---------~dg~vr~~Dln~~~~-----~~i---gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 65 ESTIVTGG---------LDGQVRRYDLNTGNE-----DQI---GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred CceEEEec---------cCceEEEEEecCCcc-----eee---ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 34677777 489999999975311 222 2356788888866 6777665 36889999987642
Q ss_pred eeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccC-CccEEEEEEEecCCeeEEEEEeCCCc
Q 000548 1185 LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFG-SLDCFATEFLIDGSTLSLVVSDEQKN 1263 (1431)
Q Consensus 1185 L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~-~~~vta~~fl~d~~~l~~i~~D~~gN 1263 (1431)
. +..++. +--|-++++.+|+++||..-+.|..+..+.-..-+ --|+.. ...+-|+.+..+.. +++++--+|-
T Consensus 128 ~--~~~~d~-~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~e--Gy~~sSieGR 200 (323)
T KOG1036|consen 128 V--VGTFDQ-GKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGE--GYVVSSIEGR 200 (323)
T ss_pred c--cccccc-CceEEEEeccCCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCC--ceEEEeecce
Confidence 2 223455 55777889999999999999998887554211111 112221 23344666433332 4899999999
Q ss_pred EEEEeeCCCCCCCccCceEEEEEE------EecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEE
Q 000548 1264 IQIFYYAPKMSESWKGQKLLSRAE------FHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIA 1337 (1431)
Q Consensus 1264 l~vl~~~p~~~~s~~~~~L~~~~~------fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~ 1337 (1431)
+.+=-+++. ++.. ..|..-++| ..+.=.||++-- .|. ...+..|+.+|-+-.--
T Consensus 201 VavE~~d~s-~~~~-skkyaFkCHr~~~~~~~~~yPVNai~F---hp~---------------~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 201 VAVEYFDDS-EEAQ-SKKYAFKCHRLSEKDTEIIYPVNAIAF---HPI---------------HGTFATGGSDGIVNIWD 260 (323)
T ss_pred EEEEccCCc-hHHh-hhceeEEeeecccCCceEEEEeceeEe---ccc---------------cceEEecCCCceEEEcc
Confidence 987544544 2211 223322222 223334444432 221 23456677888777777
Q ss_pred eCChHhHHHHHHH
Q 000548 1338 PLDELTFRRLQSL 1350 (1431)
Q Consensus 1338 pl~e~~~~~L~~L 1350 (1431)
+.+.+.++.|..-
T Consensus 261 ~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 261 LFNRKRLKQLAKY 273 (323)
T ss_pred CcchhhhhhccCC
Confidence 7776665444443
No 25
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.87 E-value=1.9 Score=54.64 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred eeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-------
Q 000548 1078 QTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS------- 1150 (1431)
Q Consensus 1078 ~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~------- 1150 (1431)
++++-++++ |.|++++... ..++.|||| -.|..++|.... ++++.+
T Consensus 443 ~Vv~W~Dl~--~lITAvcy~P--------dGk~avIGt---------~~G~C~fY~t~~--------lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 443 KVVDWNDLR--DLITAVCYSP--------DGKGAVIGT---------FNGYCRFYDTEG--------LKLVSDFHIRLHN 495 (712)
T ss_pred eeEeehhhh--hhheeEEecc--------CCceEEEEE---------eccEEEEEEccC--------CeEEEeeeEeecc
Confidence 555555555 7888887542 357999999 479999998864 222221
Q ss_pred -EeecC-ceEEEccccC---eEEEEeC-CeEEEEEccCCeeee--eEeecCCCeeEE-EEEEeCCEEEEEeccccEEEEE
Q 000548 1151 -KELKG-AISALASLQG---HLLIASG-PKIILHKWTGTELNG--IAFYDAPPLYVV-SLNIVKNFILLGDIHKSIYFLS 1221 (1431)
Q Consensus 1151 -~~~~g-~V~al~~~~g---~Ll~~vg-~~l~v~~~~~~~L~~--~a~~~~~~~~i~-~l~~~~~~IlvGD~~~Sv~ll~ 1221 (1431)
+..+| -||.++.+-| ++||..+ ++|+||+..+++|+- ++|..+ ..-+. ++...|.+|+.|-=-..|++.+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-SSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC-CcceeeeEccCCCEEEEeecCceEEEEe
Confidence 22223 4999987743 5666665 899999998776543 556555 44333 4566788999988555677766
Q ss_pred Eec
Q 000548 1222 WKE 1224 (1431)
Q Consensus 1222 ~~~ 1224 (1431)
++.
T Consensus 575 ~~~ 577 (712)
T KOG0283|consen 575 NDS 577 (712)
T ss_pred CCC
Confidence 644
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.75 E-value=26 Score=44.38 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=17.3
Q ss_pred CccEEEEEeeCCeEEEEEee
Q 000548 837 SRPFLFAILTDGTILCYQAY 856 (1431)
Q Consensus 837 ~~~~L~vgl~~G~l~~y~~~ 856 (1431)
+.-|+++|+.+|.|..|.+.
T Consensus 423 gd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 423 GDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred CCceEEEeccCCceEEEEee
Confidence 35789999999999999974
No 27
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.50 E-value=22 Score=42.66 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=91.5
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEee--cCceEEEcc-ccCe-EEEE--eCCeEEEEEcc--CCeeeeeEeecCC---
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKEL--KGAISALAS-LQGH-LLIA--SGPKIILHKWT--GTELNGIAFYDAP--- 1194 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~--~g~V~al~~-~~g~-Ll~~--vg~~l~v~~~~--~~~L~~~a~~~~~--- 1194 (1431)
..+|++|++.... .+|+......+ -..+..|.- -+|+ +.+. ..+.|.+|++. ..+|.......++
T Consensus 165 ~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 165 ADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 4589999997632 13655443332 234444442 2443 3333 25889999998 4445544433321
Q ss_pred ---CeeEEEEEE--eCCEEEEEecc-ccEEEEEEeccccEEEEeeeccC-CccEEEEEEEecCCeeEEEEEeCCCcEEEE
Q 000548 1195 ---PLYVVSLNI--VKNFILLGDIH-KSIYFLSWKEQGAQLNLLAKDFG-SLDCFATEFLIDGSTLSLVVSDEQKNIQIF 1267 (1431)
Q Consensus 1195 ---~~~i~~l~~--~~~~IlvGD~~-~Sv~ll~~~~~~~~l~~~arD~~-~~~vta~~fl~d~~~l~~i~~D~~gNl~vl 1267 (1431)
......|.. .+.+++|+..- .+|+++..+.+.++|..+..-.. ..+-..+.|--|++.| +++.-..++|.+|
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l-~Va~~~s~~v~vf 319 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL-YVANQDSNTVSVF 319 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE-EEEETTTTEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE-EEEecCCCeEEEE
Confidence 113444444 57899998855 57999988777777777654322 3344555533466664 4445568899999
Q ss_pred eeCCCCCCCccCceEEEEEEEecCcceeE
Q 000548 1268 YYAPKMSESWKGQKLLSRAEFHVGAHVTK 1296 (1431)
Q Consensus 1268 ~~~p~~~~s~~~~~L~~~~~fhlg~~vt~ 1296 (1431)
+.+++. | +|...+...-...++|
T Consensus 320 ~~d~~t-----G-~l~~~~~~~~~~~p~c 342 (345)
T PF10282_consen 320 DIDPDT-----G-KLTPVGSSVPIPSPVC 342 (345)
T ss_dssp EEETTT-----T-EEEEEEEEEESSSEEE
T ss_pred EEeCCC-----C-cEEEecccccCCCCEE
Confidence 987653 2 5776665333333333
No 28
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.49 E-value=15 Score=44.72 Aligned_cols=75 Identities=16% Similarity=0.341 Sum_probs=47.5
Q ss_pred EEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEeeec
Q 000548 753 YSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRW 832 (1431)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 832 (1431)
|++|+.++|.|.|+.+---.+++. .++.. ..+ +. .. .+.+...|..+..+
T Consensus 99 Fvaigy~~G~l~viD~RGPavI~~-~~i~~--~~~-----------~~-------------~~---~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 99 FVAIGYESGSLVVIDLRGPAVIYN-ENIRE--SFL-----------SK-------------SS---SSYVTSIEFSVMTL 148 (395)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEE-EEGGG----T------------S-------------S-------EEEEEEEEEE-
T ss_pred EEEEEecCCcEEEEECCCCeEEee-ccccc--ccc-----------cc-------------cc---ccCeeEEEEEEEec
Confidence 999999999999999987788776 32321 000 00 00 11122233333445
Q ss_pred cCC-CCccEEEEEeeCCeEEEEEeee
Q 000548 833 SAH-HSRPFLFAILTDGTILCYQAYL 857 (1431)
Q Consensus 833 g~~-~~~~~L~vgl~~G~l~~y~~~~ 857 (1431)
|++ ...+.|+||+..|.++.|++.+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp 174 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILP 174 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEec
Confidence 543 3789999999999999999854
No 29
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.91 E-value=8.3 Score=44.74 Aligned_cols=168 Identities=13% Similarity=0.186 Sum_probs=103.8
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc
Q 000548 1064 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN 1143 (1431)
Q Consensus 1064 ~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 1143 (1431)
.+++++-+ .-.++..+.|+. ++-.|++ ++.-++|.- .+.||+|+|..
T Consensus 69 ~Lkv~~~K----k~~~ICe~~fpt-----~IL~Vrm-------Nr~RLvV~L----------ee~IyIydI~~------- 115 (391)
T KOG2110|consen 69 KLKVVHFK----KKTTICEIFFPT-----SILAVRM-------NRKRLVVCL----------EESIYIYDIKD------- 115 (391)
T ss_pred eEEEEEcc----cCceEEEEecCC-----ceEEEEE-------ccceEEEEE----------cccEEEEeccc-------
Confidence 56777764 336777777764 3334455 234555543 56799999974
Q ss_pred cEEEEEEEeec-Cc---eEEEccccC--eEEEEe---CCeEEEEEccCCeeeeeEe---ecCCCeeEEEEEEeCCEEEEE
Q 000548 1144 LVTEVYSKELK-GA---ISALASLQG--HLLIAS---GPKIILHKWTGTELNGIAF---YDAPPLYVVSLNIVKNFILLG 1211 (1431)
Q Consensus 1144 ~l~lv~~~~~~-g~---V~al~~~~g--~Ll~~v---g~~l~v~~~~~~~L~~~a~---~~~~~~~i~~l~~~~~~IlvG 1211 (1431)
+|++|..+.- -- +.|+..-++ ||..-. ...|++|+... |.++.. ++. +.-+...+..|.+|.-+
T Consensus 116 -MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~aH~~-~lAalafs~~G~llATA 191 (391)
T KOG2110|consen 116 -MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTINAHKG-PLAALAFSPDGTLLATA 191 (391)
T ss_pred -ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEEecCC-ceeEEEECCCCCEEEEe
Confidence 8888876654 22 444443332 665542 24577887753 344443 334 44555555556666554
Q ss_pred eccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1212 DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1212 D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
--.--|-=+---++..++.++=|-..+..+++..|-.|... +.++-..+-+++|++.
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~--L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF--LAASSNTETVHIFKLE 248 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe--EEEecCCCeEEEEEec
Confidence 33222222222366789999999999999999998555443 6777889999999874
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.79 E-value=48 Score=44.67 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=80.2
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--ccCe-EEEEe-CCeEEEEEccCC
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--LQGH-LLIAS-GPKIILHKWTGT 1183 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~--~~g~-Ll~~v-g~~l~v~~~~~~ 1183 (1431)
..+|+.|. ..|.|.+|++... ..+ ......+.|.++.- -+|+ |++|. ...|++|++...
T Consensus 588 ~~~L~Sgs---------~Dg~v~iWd~~~~-----~~~---~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 588 PTLLASGS---------DDGSVKLWSINQG-----VSI---GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred CCEEEEEc---------CCCEEEEEECCCC-----cEE---EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 35777775 3689999998641 112 22334567777753 2454 44443 368999999754
Q ss_pred eeeeeEeecCCCeeEEEEEEe-CCEEEEEeccccEEEEEEecc-----ccEEEEeeeccCCccEEEEEEEecCCeeEEEE
Q 000548 1184 ELNGIAFYDAPPLYVVSLNIV-KNFILLGDIHKSIYFLSWKEQ-----GAQLNLLAKDFGSLDCFATEFLIDGSTLSLVV 1257 (1431)
Q Consensus 1184 ~L~~~a~~~~~~~~i~~l~~~-~~~IlvGD~~~Sv~ll~~~~~-----~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~ 1257 (1431)
+.....+... ...|.++... +++|+.|..-..|.++..... ...+..+. .+..++.++.|-.++.. +++
T Consensus 651 ~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~--las 725 (793)
T PLN00181 651 KLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGY--IAT 725 (793)
T ss_pred CccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCE--EEE
Confidence 3211112122 3345555543 568888877777777765421 11222222 12345566665455554 778
Q ss_pred EeCCCcEEEEee
Q 000548 1258 SDEQKNIQIFYY 1269 (1431)
Q Consensus 1258 ~D~~gNl~vl~~ 1269 (1431)
+..+|.++++..
T Consensus 726 gs~D~~v~iw~~ 737 (793)
T PLN00181 726 GSETNEVFVYHK 737 (793)
T ss_pred EeCCCEEEEEEC
Confidence 888999999864
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=92.57 E-value=18 Score=41.88 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=42.9
Q ss_pred cEEEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEee
Q 000548 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ 830 (1431)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 830 (1431)
+.|++-+..|+++.||.|...++...+.+. --.+..+.+.
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGh----------------------------------------i~~vr~vavS 202 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGH----------------------------------------IETVRGVAVS 202 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecch----------------------------------------hheeeeeeec
Confidence 559999999999999999987765544210 0113333322
Q ss_pred eccCCCCccEEEEEeeCCeEEEEEe
Q 000548 831 RWSAHHSRPFLFAILTDGTILCYQA 855 (1431)
Q Consensus 831 ~~g~~~~~~~L~vgl~~G~l~~y~~ 855 (1431)
...||||....|+++-.|.+
T Consensus 203 -----~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 203 -----KRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred -----ccCceEEEecCCCeeEEEec
Confidence 34799999999999999986
No 32
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=92.50 E-value=7 Score=46.56 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=91.7
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCC-CCCccEEEEEE-EeecCceEEEcc----ccCeEE-EEeCCeEEEEEc
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNAD-NPQNLVTEVYS-KELKGAISALAS----LQGHLL-IASGPKIILHKW 1180 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~-~~~~~l~lv~~-~~~~g~V~al~~----~~g~Ll-~~vg~~l~v~~~ 1180 (1431)
..+|+=|. ..|++++|.+..-.+ ......+-+|. .+..=+|+.|.. .+.+|+ ++.-+.+.+|++
T Consensus 135 gs~iiTgs---------kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 135 GSHIITGS---------KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred CcEEEecC---------CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 45666554 478999999875211 01111222332 223446666653 455777 445588999999
Q ss_pred cCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccc---------------cEEEEeeeccCCccEEEEE
Q 000548 1181 TGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQG---------------AQLNLLAKDFGSLDCFATE 1245 (1431)
Q Consensus 1181 ~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~---------------~~l~~~arD~~~~~vta~~ 1245 (1431)
....|+....++. +...+.+...+-+++||-.--.|++..|..-+ .++-.+-.......|||.+
T Consensus 206 S~g~LLlti~fp~-si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 206 SLGVLLLTITFPS-SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred ccceeeEEEecCC-cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE
Confidence 9888777666655 55555556667899999988888877663221 1111111111224688888
Q ss_pred EEecCCeeEEEEEeCCCcEEEEe
Q 000548 1246 FLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1246 fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
.-.|++. ++.+|.+|++.+..
T Consensus 285 is~Dgtl--LlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 285 ISTDGTL--LLSGDEDGKVCVWD 305 (476)
T ss_pred EecCccE--EEeeCCCCCEEEEe
Confidence 5456655 79999999999986
No 33
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.00 E-value=44 Score=42.47 Aligned_cols=207 Identities=16% Similarity=0.249 Sum_probs=126.7
Q ss_pred ceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc---cCe
Q 000548 1090 NALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL---QGH 1166 (1431)
Q Consensus 1090 ~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~---~g~ 1166 (1431)
.++|.+.|. +..||++|| ..|.|.+|++... ..++.+- ..+|++-.|... .|.
T Consensus 414 y~l~~~Fvp--------gd~~Iv~G~---------k~Gel~vfdlaS~-----~l~Eti~--AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 414 YILASKFVP--------GDRYIVLGT---------KNGELQVFDLASA-----SLVETIR--AHDGAIWSISLSPDNKGF 469 (888)
T ss_pred cEEEEEecC--------CCceEEEec---------cCCceEEEEeehh-----hhhhhhh--ccccceeeeeecCCCCce
Confidence 777776653 457999999 5899999999752 1123222 457888887754 344
Q ss_pred EEEEeCCeEEEEEcc--------CCee---eeeEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEeccccEEEEee
Q 000548 1167 LLIASGPKIILHKWT--------GTEL---NGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLA 1233 (1431)
Q Consensus 1167 Ll~~vg~~l~v~~~~--------~~~L---~~~a~~~~~~~~i~~l~~~--~~~IlvGD~~~Sv~ll~~~~~~~~l~~~a 1233 (1431)
+.++.-+.|.+|++. +++. ...-.++. +--|.++.+. +-+++||=+-.-|.++-.+.-.-.+.+.+
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG 548 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG 548 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc
Confidence 555556788899884 1222 11223333 5556666554 67888887777777776554333333333
Q ss_pred eccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEe-cCcceeEEEEEeeecCCCCCCCC
Q 000548 1234 KDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFH-VGAHVTKFLRLQMLATSSDRTGA 1312 (1431)
Q Consensus 1234 rD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fh-lg~~vt~~~~~~~~~~~~~~~~~ 1312 (1431)
+...|+|++ +--++.| ++.+-.+.|+-+.-.+--+ +.-+|+ ..|.|++.+ +.|.
T Consensus 549 ---HkLPV~smD-IS~DSkl-ivTgSADKnVKiWGLdFGD----------CHKS~fAHdDSvm~V~---F~P~------- 603 (888)
T KOG0306|consen 549 ---HKLPVLSMD-ISPDSKL-IVTGSADKNVKIWGLDFGD----------CHKSFFAHDDSVMSVQ---FLPK------- 603 (888)
T ss_pred ---cccceeEEe-ccCCcCe-EEeccCCCceEEeccccch----------hhhhhhcccCceeEEE---Eccc-------
Confidence 678899999 4555555 7777778888776544322 323333 345666654 3442
Q ss_pred CCCCCCCCceEEEEEcCCCcEEEEEeCChHhHHHHHHHHHHHHhc
Q 000548 1313 APGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDS 1357 (1431)
Q Consensus 1313 ~~g~~~~~~~~il~~T~~GsIg~l~pl~e~~~~~L~~Lq~~l~~~ 1357 (1431)
...+|+ .|--|.+..-+-+.|+..+.|.....+.
T Consensus 604 ---------~~~FFt--~gKD~kvKqWDg~kFe~iq~L~~H~~ev 637 (888)
T KOG0306|consen 604 ---------THLFFT--CGKDGKVKQWDGEKFEEIQKLDGHHSEV 637 (888)
T ss_pred ---------ceeEEE--ecCcceEEeechhhhhhheeeccchhee
Confidence 234444 4555666777777777777777766653
No 34
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.00 E-value=2.4 Score=51.39 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=73.0
Q ss_pred cCeEEEEeCCeEEEEEccCCeee-eeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecccc---EEEEeeec--c-
Q 000548 1164 QGHLLIASGPKIILHKWTGTELN-GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGA---QLNLLAKD--F- 1236 (1431)
Q Consensus 1164 ~g~Ll~~vg~~l~v~~~~~~~L~-~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~---~l~~~arD--~- 1236 (1431)
.+.+++|.|..||=+.|++.+++ +-+.-.. +..++++.....+|.+|.---.|-|+ ++-.. ....++.. .
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfw--DpR~ksrv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFW--DPRDKSRVGTLDAASSVNSH 222 (703)
T ss_pred ccEEEeecCcceEEEEccccccccccccccc-cceeeeecCccceEEecccCceEEEe--cchhhhhheeeecccccCCC
Confidence 35788999999999999988744 4443335 78888999999999999988877775 33221 11222222 1
Q ss_pred ----CCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCC
Q 000548 1237 ----GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1237 ----~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p 1271 (1431)
....||++.| +++-|.+.++-..|.++++.+..
T Consensus 223 pg~~~~~svTal~F--~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 223 PGGDAAPSVTALKF--RDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred ccccccCcceEEEe--cCCceeEEeeccCCcEEEEEccc
Confidence 2345999998 33467789999999999997643
No 35
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=91.36 E-value=2.8 Score=51.05 Aligned_cols=250 Identities=12% Similarity=0.177 Sum_probs=134.9
Q ss_pred EecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCCCcc
Q 000548 973 TSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSV 1052 (1431)
Q Consensus 973 ~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~ 1052 (1431)
..+|++||-.+-... -+|++.+....+.|++.|..+..+++.... .+-...+.... +..++... .
T Consensus 419 sdDGtvriWEi~TgR------cvr~~~~d~~I~~vaw~P~~~~~vLAvA~~---~~~~ivnp~~G-~~~e~~~t-----~ 483 (733)
T KOG0650|consen 419 SDDGTVRIWEIATGR------CVRTVQFDSEIRSVAWNPLSDLCVLAVAVG---ECVLIVNPIFG-DRLEVGPT-----K 483 (733)
T ss_pred CCCCcEEEEEeecce------EEEEEeecceeEEEEecCCCCceeEEEEec---CceEEeCcccc-chhhhcch-----h
Confidence 345789999888754 689999999999999999998888776642 11111111111 11111000 0
Q ss_pred cc-ccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeec---CCCCcceEEEEEeeeecCCCccccee
Q 000548 1053 DL-HRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNT---TTKENETLLAIGTAYVQGEDVAARGR 1128 (1431)
Q Consensus 1053 ~~-~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~---~~~~~~~~ivVGT~~~~~e~~~~~Gr 1128 (1431)
+. ...+....--.++ .+|..- .+++.|...|+.+..+++- .-+....||++-.+- ...-+
T Consensus 484 ell~~~~~~~~p~~~~-------~~W~~~---~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~------~~~~~ 547 (733)
T KOG0650|consen 484 ELLASAPNESEPDAAV-------VTWSRA---SLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD------SGNKS 547 (733)
T ss_pred hhhhcCCCccCCcccc-------eeechh---hhhhhccceEEEEecCCccceeeeecCCceEEEeccC------CCcce
Confidence 00 0000000000001 245442 2344454455555444321 113455788765431 13457
Q ss_pred EEEEEEeecCCCCCccEEEEEEEeecCceEEEc--cccCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEE--e
Q 000548 1129 VLLFSTGRNADNPQNLVTEVYSKELKGAISALA--SLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNI--V 1204 (1431)
Q Consensus 1129 i~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~--~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~--~ 1204 (1431)
++++++++... +..-...+|.|.++. ...-+|++|.-..|++|+|-+.+|+++.... .-.|.++.+ .
T Consensus 548 VliHQLSK~~s-------Q~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~ 618 (733)
T KOG0650|consen 548 VLIHQLSKRKS-------QSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG--SKWISSMSIHPN 618 (733)
T ss_pred EEEEecccccc-------cCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC--CeeeeeeeecCC
Confidence 88999986311 111123467666654 4566899999999999999886666554322 234444444 5
Q ss_pred CCEEEEEeccccEEEEEEecc--ccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1205 KNFILLGDIHKSIYFLSWKEQ--GAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1205 ~~~IlvGD~~~Sv~ll~~~~~--~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
|+-+++|-.-+-+..+-.+-. +++... ++..-++++.|.....- |..+-.+|.++||.
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr----~H~~avr~Va~H~ryPL--fas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLR----LHEKAVRSVAFHKRYPL--FASGSDDGTVIVFH 678 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhh----hhhhhhhhhhhccccce--eeeecCCCcEEEEe
Confidence 688888887777666544422 222111 23445667776444433 45555567777764
No 36
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.22 E-value=8 Score=44.08 Aligned_cols=135 Identities=18% Similarity=0.257 Sum_probs=85.8
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc---cc-cCeEEEEeCC---eEEEEEccCCeeeeeEe---ecCCC
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA---SL-QGHLLIASGP---KIILHKWTGTELNGIAF---YDAPP 1195 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~---~~-~g~Ll~~vg~---~l~v~~~~~~~L~~~a~---~~~~~ 1195 (1431)
..+|+||.+..+ ++++|..++..-+-.+| .. +..+||.=|. .|.|-++...+-.+-.+ ++. .
T Consensus 112 ~~~I~VytF~~n-------~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-~ 183 (346)
T KOG2111|consen 112 ENKIYVYTFPDN-------PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-D 183 (346)
T ss_pred cCeEEEEEcCCC-------hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-c
Confidence 679999999743 77777777755333344 33 3467777674 46676665544321122 334 3
Q ss_pred eeEEEEEEeCCEEEEEeccccEEEEEEecc-ccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCC
Q 000548 1196 LYVVSLNIVKNFILLGDIHKSIYFLSWKEQ-GAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1196 ~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~-~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p 1271 (1431)
+-.+.|.-.|.++ +.-..||--+=-|+.+ ...+.++-|-..+-.++++.|-.+... +.++-+.|-|++|+.-+
T Consensus 184 Iacv~Ln~~Gt~v-ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~--LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 184 IACVALNLQGTLV-ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW--LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeEEEEcCCccEE-EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE--EEEEcCCCeEEEEEeec
Confidence 3444444445544 3344556545556755 457788999999999999998445444 67788889999999754
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=91.18 E-value=1.5 Score=52.21 Aligned_cols=212 Identities=12% Similarity=0.156 Sum_probs=114.2
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc
Q 000548 1064 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN 1143 (1431)
Q Consensus 1064 ~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 1143 (1431)
.|+|-|..++ .++. .|..++.+.|++ |.. ++...++||+ ..|+|+-|++...
T Consensus 281 ~lKlwDtETG----~~~~--~f~~~~~~~cvk---f~p----d~~n~fl~G~---------sd~ki~~wDiRs~------ 332 (503)
T KOG0282|consen 281 FLKLWDTETG----QVLS--RFHLDKVPTCVK---FHP----DNQNIFLVGG---------SDKKIRQWDIRSG------ 332 (503)
T ss_pred eeeeeccccc----eEEE--EEecCCCceeee---cCC----CCCcEEEEec---------CCCcEEEEeccch------
Confidence 5778776432 3443 466677888775 431 2346888898 4899999999641
Q ss_pred cEEEEEEEe-ecCceEEEccc--cCeEEEEeC-CeEEEEEccCCe-eeeeEeecCCCeeEEEEEEeCCEEEEEeccccEE
Q 000548 1144 LVTEVYSKE-LKGAISALASL--QGHLLIASG-PKIILHKWTGTE-LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIY 1218 (1431)
Q Consensus 1144 ~l~lv~~~~-~~g~V~al~~~--~g~Ll~~vg-~~l~v~~~~~~~-L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ 1218 (1431)
+++++.+ .-|+|..+.-+ +.+++.++- ..++||+++..- +.-++...++.+....+...+++++.=-+-.-+.
T Consensus 333 --kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ 410 (503)
T KOG0282|consen 333 --KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIA 410 (503)
T ss_pred --HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEE
Confidence 1233322 34777777754 336665554 689999998542 2122322221111223333333332211111111
Q ss_pred EE----EEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcce
Q 000548 1219 FL----SWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHV 1294 (1431)
Q Consensus 1219 ll----~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~v 1294 (1431)
++ +|+.... -.+..-..+-.-+.++|-.|+.+ ++.+|.+|+++++.+++. +|.....-|-+-.|
T Consensus 411 ifs~~~~~r~nkk--K~feGh~vaGys~~v~fSpDG~~--l~SGdsdG~v~~wdwkt~--------kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 411 IFSTVPPFRLNKK--KRFEGHSVAGYSCQVDFSPDGRT--LCSGDSDGKVNFWDWKTT--------KLVSKLKAHDQPCI 478 (503)
T ss_pred EEecccccccCHh--hhhcceeccCceeeEEEcCCCCe--EEeecCCccEEEeechhh--------hhhhccccCCcceE
Confidence 22 2221111 11122233444567888789888 799999999999987653 45555555522222
Q ss_pred eEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEE
Q 000548 1295 TKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGC 1335 (1431)
Q Consensus 1295 t~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~ 1335 (1431)
..- ..|.. ...++.++.+|.|-+
T Consensus 479 ~v~----wHP~e--------------~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 479 GVD----WHPVE--------------PSKVATCGWDGLIKI 501 (503)
T ss_pred EEE----ecCCC--------------cceeEecccCceeEe
Confidence 222 23321 235777778888754
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.05 E-value=54 Score=41.63 Aligned_cols=178 Identities=14% Similarity=0.126 Sum_probs=101.1
Q ss_pred ceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCC
Q 000548 1061 EEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADN 1140 (1431)
Q Consensus 1061 ~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~ 1140 (1431)
+.+.+|..++. +|..+..-.-.+.|.+.-+..+. ..+.+++|-+ .-.|++|+..+
T Consensus 258 ~~g~~~~~d~e----s~~~~~~~~~~~~~e~~~~~~~~-------~~~~~l~vta----------eQnl~l~d~~~---- 312 (775)
T KOG0319|consen 258 GSGVVQYWDSE----SGKCVYKQRQSDSEEIDHLLAIE-------SMSQLLLVTA----------EQNLFLYDEDE---- 312 (775)
T ss_pred CCceEEEEecc----cchhhhhhccCCchhhhcceecc-------ccCceEEEEc----------cceEEEEEccc----
Confidence 34566777763 45554333333344433222221 2345666654 33566775543
Q ss_pred CCccEEEEEE-EeecCceEEEcccc---CeEEEEeC-CeEEEEEccCCeeeeeEeecCCCeeEEEEE--EeCCEEEEEec
Q 000548 1141 PQNLVTEVYS-KELKGAISALASLQ---GHLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLN--IVKNFILLGDI 1213 (1431)
Q Consensus 1141 ~~~~l~lv~~-~~~~g~V~al~~~~---g~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~--~~~~~IlvGD~ 1213 (1431)
++++-. --..+-|+.|+-++ .+|++|.| ..+++|+.....-. .+...--.|.+|. ..+.+|+-|--
T Consensus 313 ----l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sK 385 (775)
T KOG0319|consen 313 ----LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSK 385 (775)
T ss_pred ----cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecC
Confidence 433322 12456788888665 68999988 57899977543211 2222112355666 34668888988
Q ss_pred cccEEEEEEeccccEEEEeeec-cCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCC
Q 000548 1214 HKSIYFLSWKEQGAQLNLLAKD-FGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1214 ~~Sv~ll~~~~~~~~l~~~arD-~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p 1271 (1431)
-+|+-+.+++....++..+|.- -+...|+++.+-..+-. +|+.+-.++-|-+..++.
T Consensus 386 D~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~as-ffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 386 DKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGAS-FFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred CceEEEEEecCCcchhhhhhhhcccccccceeeecccCcc-EEEEecCCceEEEecCCC
Confidence 9999999996555555555553 45667888885222223 255555677766666543
No 39
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=90.90 E-value=7 Score=44.30 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=17.2
Q ss_pred ccEEEEEeeCCeEEEEEee
Q 000548 838 RPFLFAILTDGTILCYQAY 856 (1431)
Q Consensus 838 ~~~L~vgl~~G~l~~y~~~ 856 (1431)
..||-+|..||.+++|.+.
T Consensus 35 G~~lAvGc~nG~vvI~D~~ 53 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFD 53 (405)
T ss_pred cceeeeeccCCcEEEEEcc
Confidence 5799999999999999974
No 40
>PTZ00420 coronin; Provisional
Probab=90.34 E-value=26 Score=44.71 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=83.5
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccCeEEEEe--CCeEEEEEccCCeeeee-EeecCCCeeEEE-
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQGHLLIAS--GPKIILHKWTGTELNGI-AFYDAPPLYVVS- 1200 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~-~~g~Ll~~v--g~~l~v~~~~~~~L~~~-a~~~~~~~~i~~- 1200 (1431)
.|.|.+|++... . .++.....+.|++++- -+|.++++. +.+|++|++...+.+.. ..+.. ......
T Consensus 147 DgtIrIWDl~tg-----~---~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-~~~s~~v 217 (568)
T PTZ00420 147 DSFVNIWDIENE-----K---RAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-GKNTKNI 217 (568)
T ss_pred CCeEEEEECCCC-----c---EEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC-CceeEEE
Confidence 689999999642 1 1222234577888873 357666554 46899999987654431 11222 111111
Q ss_pred ----EEEeCCEEEEEecc----ccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCC
Q 000548 1201 ----LNIVKNFILLGDIH----KSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPK 1272 (1431)
Q Consensus 1201 ----l~~~~~~IlvGD~~----~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~ 1272 (1431)
+...+++|+.+-.- +.|.++..+....-+..+.-|..+..++..-. -+.+.+ ++++-.+++|+++++...
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D-~~tg~l-~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD-ESTGLI-YLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee-CCCCCE-EEEEECCCeEEEEEccCC
Confidence 12345677763322 35777655433333434333443333333321 233344 788889999999997532
Q ss_pred CCCCccCceEEEEEEEecCcceeEE
Q 000548 1273 MSESWKGQKLLSRAEFHVGAHVTKF 1297 (1431)
Q Consensus 1273 ~~~s~~~~~L~~~~~fhlg~~vt~~ 1297 (1431)
.+....+|+..+....+
T Consensus 296 --------~~~~l~~~~s~~p~~g~ 312 (568)
T PTZ00420 296 --------SIRKVNEYKSCSPFRSF 312 (568)
T ss_pred --------cEEeecccccCCCccce
Confidence 24455666665555444
No 41
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.25 E-value=39 Score=38.71 Aligned_cols=197 Identities=11% Similarity=0.100 Sum_probs=109.6
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc
Q 000548 1064 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN 1143 (1431)
Q Consensus 1064 ~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 1143 (1431)
.|-+.+. ..|+.++++.=-.+- |+-+.+-. .++--|.||+ .+.|.+|.+...... .
T Consensus 108 ~i~iw~~----~~W~~~~slK~H~~~-Vt~lsiHP-------S~KLALsVg~----------D~~lr~WNLV~Gr~a--~ 163 (362)
T KOG0294|consen 108 HIIIWRV----GSWELLKSLKAHKGQ-VTDLSIHP-------SGKLALSVGG----------DQVLRTWNLVRGRVA--F 163 (362)
T ss_pred cEEEEEc----CCeEEeeeecccccc-cceeEecC-------CCceEEEEcC----------CceeeeehhhcCccc--e
Confidence 3445554 488888765544333 44443211 2455666776 567888888763211 1
Q ss_pred cEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEe-CCEEEEEeccccEEEEEE
Q 000548 1144 LVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIV-KNFILLGDIHKSIYFLSW 1222 (1431)
Q Consensus 1144 ~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~-~~~IlvGD~~~Sv~ll~~ 1222 (1431)
.+++-+.-.. |.-. .-..++++.+-++|-+|+++.-.+.+.-. + |.-+.++... ++.++||=--+-+.+.
T Consensus 164 v~~L~~~at~---v~w~-~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~--~-~~r~l~~~~l~~~~L~vG~d~~~i~~~-- 234 (362)
T KOG0294|consen 164 VLNLKNKATL---VSWS-PQGDHFVVSGRNKIDIYQLDNASVFREIE--N-PKRILCATFLDGSELLVGGDNEWISLK-- 234 (362)
T ss_pred eeccCCccee---eEEc-CCCCEEEEEeccEEEEEecccHhHhhhhh--c-cccceeeeecCCceEEEecCCceEEEe--
Confidence 1221111000 2222 23457888888999999999766543222 2 3233444432 5677776544555443
Q ss_pred eccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEE
Q 000548 1223 KEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR 1299 (1431)
Q Consensus 1223 ~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~ 1299 (1431)
+.+. ......=+-++..|-++.+..+...-+++.+-.+|-|.+...+-+. ..+-...+++++|.++||+.-
T Consensus 235 D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~-----k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 235 DTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET-----KKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred ccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc-----cCCcceeEEeecCCccceeee
Confidence 4332 1111112334555666665444322237778889999998765432 234567899999999999874
No 42
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=90.19 E-value=4.7 Score=44.21 Aligned_cols=135 Identities=20% Similarity=0.186 Sum_probs=91.8
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cC-eEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEE--E
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QG-HLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVS--L 1201 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g-~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~--l 1201 (1431)
.|-+++|++.. -+.+++.+++.+|+++.-. .| +|.++-|..|..|+...=. ..-.+++ |.-|.+ |
T Consensus 164 d~tVRLWD~rT--------gt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~--~lKs~k~-P~nV~SASL 232 (334)
T KOG0278|consen 164 DKTVRLWDHRT--------GTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG--LLKSYKM-PCNVESASL 232 (334)
T ss_pred CCceEEEEecc--------CcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccc--ceeeccC-ccccccccc
Confidence 45678888853 4567888999999999854 34 5668889999988876533 3445677 777775 5
Q ss_pred EEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCC
Q 000548 1202 NIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSE 1275 (1431)
Q Consensus 1202 ~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~ 1275 (1431)
...+++.++|--+ .++++|+...+.=+..-.--++-.|-|+.|-.|+.. +..+-.+|.|.+.+..|.+..
T Consensus 233 ~P~k~~fVaGged--~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~--yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 233 HPKKEFFVAGGED--FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL--YASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCceEEecCcc--eEEEEEeccCCceeeecccCCCCceEEEEECCCCce--eeccCCCceEEEEEecCCCch
Confidence 5567777777543 455666544332111111224456888998667654 788889999999998886643
No 43
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=89.88 E-value=80 Score=41.70 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=99.9
Q ss_pred eEEEEeC-CeEEEEEccCCeeeeeEeecCCCeeEEEEEEe-----CC---EEEEEeccccEEEEEEecccc--EEEEeee
Q 000548 1166 HLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLNIV-----KN---FILLGDIHKSIYFLSWKEQGA--QLNLLAK 1234 (1431)
Q Consensus 1166 ~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~-----~~---~IlvGD~~~Sv~ll~~~~~~~--~l~~~ar 1234 (1431)
.+++|.| .-++..+.+...|..++...+ -.-|.++... .+ ++.||=--+=+..+-|.++.- ....+.-
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~-e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~ 579 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEF-EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG 579 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeehee-cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC
Confidence 4666655 566666777766777776666 6666666432 23 777876555555555544322 2223444
Q ss_pred ccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCC
Q 000548 1235 DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAP 1314 (1431)
Q Consensus 1235 D~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~ 1314 (1431)
...||.+...+|-.|..+ ++++=.+|-++-|.++-.. | .|-.+-.-++|-.+.++++.+......-.
T Consensus 580 ~~iPRSIl~~~~e~d~~y--LlvalgdG~l~~fv~d~~t-----g-~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf----- 646 (1096)
T KOG1897|consen 580 EIIPRSILLTTFEGDIHY--LLVALGDGALLYFVLDINT-----G-QLSDRKKVTLGTQPISLRTFSSKSRTAVF----- 646 (1096)
T ss_pred CccchheeeEEeeccceE--EEEEcCCceEEEEEEEccc-----c-eEccccccccCCCCcEEEEEeeCCceEEE-----
Confidence 567999988887555555 7889999999888776443 1 34444556889988888876544321000
Q ss_pred CCCCCCceEEEEEcCCCcEEEEEeCChHh
Q 000548 1315 GSDKTNRFALLFGTLDGSIGCIAPLDELT 1343 (1431)
Q Consensus 1315 g~~~~~~~~il~~T~~GsIg~l~pl~e~~ 1343 (1431)
...++|.++|+ .+|.+ ++.|++=++
T Consensus 647 --a~sdrP~viY~-~n~kL-v~spls~ke 671 (1096)
T KOG1897|consen 647 --ALSDRPTVIYS-SNGKL-VYSPLSLKE 671 (1096)
T ss_pred --EeCCCCEEEEe-cCCcE-EEeccchHH
Confidence 02357888888 56776 778887433
No 44
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=89.67 E-value=37 Score=37.62 Aligned_cols=143 Identities=16% Similarity=0.179 Sum_probs=90.1
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEEeCC--eEEEEEccC
Q 000548 1106 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIASGP--KIILHKWTG 1182 (1431)
Q Consensus 1106 ~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g~Ll~~vg~--~l~v~~~~~ 1182 (1431)
.+..-+++|+ -+|+|.+|++.++. ..-+++- |..-+|.++... .|..++|+++ ++++|++-.
T Consensus 134 pnQteLis~d---------qsg~irvWDl~~~~----c~~~liP--e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 134 PNQTELISGD---------QSGNIRVWDLGENS----CTHELIP--EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred CCcceEEeec---------CCCcEEEEEccCCc----cccccCC--CCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 3566788888 48999999998631 1112222 223566666644 5666777775 578888843
Q ss_pred ----CeeeeeEeecCCCeeEEEEE--EeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEE
Q 000548 1183 ----TELNGIAFYDAPPLYVVSLN--IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLV 1256 (1431)
Q Consensus 1183 ----~~L~~~a~~~~~~~~i~~l~--~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i 1256 (1431)
.+|.++--+.+...|+++.. ....+|+..-.-+-+.+++- +.--..++.-+-+.|||-.+.|-.|+.. ++
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~--~~~~kle~~l~gh~rWvWdc~FS~dg~Y--lv 274 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT--DDFFKLELVLTGHQRWVWDCAFSADGEY--LV 274 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec--CCceeeEEEeecCCceEEeeeeccCccE--EE
Confidence 45777666665466777544 34557777777777777643 3332233444556799999999666655 55
Q ss_pred EEeCCCcEEEE
Q 000548 1257 VSDEQKNIQIF 1267 (1431)
Q Consensus 1257 ~~D~~gNl~vl 1267 (1431)
.+..++-..+.
T Consensus 275 Tassd~~~rlW 285 (311)
T KOG0315|consen 275 TASSDHTARLW 285 (311)
T ss_pred ecCCCCceeec
Confidence 55556555554
No 45
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.51 E-value=55 Score=39.35 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCccEEEEEEe--CCEEEEEEeCCcEEEEEecCCCceEEeecCcccccCCCceEEEEeec
Q 000548 657 ENSTVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYH 714 (1431)
Q Consensus 657 ~~~~I~~as~~--d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~ 714 (1431)
....|.+.++. .|.++++--||.+.+|++|.+...+ ++.. .+ ....|.+++++.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~-~l--~~fPi~~a~f~p 267 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSI-HL--EKFPIQKAEFAP 267 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-heee-ee--ccCccceeeecC
Confidence 34468888885 4567777789999999988543221 1111 01 255666766643
No 46
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=88.97 E-value=4.6 Score=48.19 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=78.4
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC--CeEEEEEccCCeeeeeEeecCCCeeEEEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLN 1202 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~ 1202 (1431)
.+|-+.+|++.-. .|.......|+-+..|. |++..+..|++.|| .||++|+...+++...--++. |...+...
T Consensus 185 d~G~VtlwDv~g~--sp~~~~~~~HsAP~~gi--cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-Plstvaf~ 259 (673)
T KOG4378|consen 185 DKGAVTLWDVQGM--SPIFHASEAHSAPCRGI--CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-PLSTVAFS 259 (673)
T ss_pred cCCeEEEEeccCC--CcccchhhhccCCcCcc--eecCCccceEEEecccceEEEeecccccccceeeecC-Ccceeeec
Confidence 4899999999642 12233455666666665 34578889999998 799999999877766666777 87777777
Q ss_pred EeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEE
Q 000548 1203 IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFL 1247 (1431)
Q Consensus 1203 ~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl 1247 (1431)
-.|-++++|...--|.++..+..+.-+..+ ..+...|+++.|.
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--sah~~sVt~vafq 302 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKAPVAVR--SAHDASVTRVAFQ 302 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCCCceEe--eecccceeEEEee
Confidence 777788888887776665544333322222 2233448887773
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.07 E-value=7.9 Score=49.26 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=105.0
Q ss_pred CCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-
Q 000548 1085 MQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL- 1163 (1431)
Q Consensus 1085 l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~- 1163 (1431)
|.-++.|+|++.-.. +..|++=|. --|++.+|.|.. -+.++-.+++.-|||+|-.
T Consensus 406 F~HndfVTcVaFnPv-------DDryFiSGS---------LD~KvRiWsI~d--------~~Vv~W~Dl~~lITAvcy~P 461 (712)
T KOG0283|consen 406 FSHNDFVTCVAFNPV-------DDRYFISGS---------LDGKVRLWSISD--------KKVVDWNDLRDLITAVCYSP 461 (712)
T ss_pred EecCCeeEEEEeccc-------CCCcEeecc---------cccceEEeecCc--------CeeEeehhhhhhheeEEecc
Confidence 344678888864332 457999887 479999999964 5678888999999999944
Q ss_pred cC-e-EEEEeCCeEEEEEccCCeeeeeEeecC-----C-CeeEEEEEEe---CCEEEEEeccccEEEEEEeccccEEEEe
Q 000548 1164 QG-H-LLIASGPKIILHKWTGTELNGIAFYDA-----P-PLYVVSLNIV---KNFILLGDIHKSIYFLSWKEQGAQLNLL 1232 (1431)
Q Consensus 1164 ~g-~-Ll~~vg~~l~v~~~~~~~L~~~a~~~~-----~-~~~i~~l~~~---~~~IlvGD~~~Sv~ll~~~~~~~~l~~~ 1232 (1431)
+| + |+-+....+++|.-.+.+|...-.++. . +--||.+... .+.++|.-.=--|-++ +-.+..|+..
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~--d~~~~~lv~K 539 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIY--DGRDKDLVHK 539 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEE--eccchhhhhh
Confidence 23 3 444456788899988766554222211 0 1246666654 2456665444445554 3334455555
Q ss_pred eeccCC-ccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCC
Q 000548 1233 AKDFGS-LDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMS 1274 (1431)
Q Consensus 1233 arD~~~-~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~ 1274 (1431)
-|.+.. ..-+.+.|..|+.. ||++-.+.++++.++++.+.
T Consensus 540 fKG~~n~~SQ~~Asfs~Dgk~--IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 540 FKGFRNTSSQISASFSSDGKH--IVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred hcccccCCcceeeeEccCCCE--EEEeecCceEEEEeCCCCcc
Confidence 555543 33456667777777 77777999999999876654
No 48
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=88.06 E-value=6.5 Score=47.81 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=54.6
Q ss_pred CceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEE-eecCceEEEccc----
Q 000548 1089 ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALASL---- 1163 (1431)
Q Consensus 1089 E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~-~~~g~V~al~~~---- 1163 (1431)
+.+++++...+.-....-...++.|||. .|.+++|++.++.+. .+..+.+... ..+++|.+|+.+
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn---------~G~v~~fkIlp~~~g-~f~v~~~~~~~~~~~~i~~I~~i~~~~ 205 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTN---------SGNVLTFKILPSSNG-RFSVQFAGATTNHDSPILSIIPINADT 205 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEET---------TSEEEEEEEEE-GGG--EEEEEEEEE--SS----EEEEEETTT
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeC---------CCCEEEEEEecCCCC-ceEEEEeeccccCCCceEEEEEEECCC
Confidence 4455554433331112225689999994 799999999864332 2335555555 567888888876
Q ss_pred --------------------cCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEE
Q 000548 1164 --------------------QGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVS 1200 (1431)
Q Consensus 1164 --------------------~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~ 1200 (1431)
+|+++++.-..+++|.+...+..-+.| +. +.....
T Consensus 206 G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~-~~~~~~ 260 (395)
T PF08596_consen 206 GESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DD-PFLCSS 260 (395)
T ss_dssp --B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS--EEEEE
T ss_pred CCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-cc-ccccce
Confidence 257888888999999999877777777 44 444333
No 49
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=88.01 E-value=19 Score=35.19 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=56.8
Q ss_pred ecCcEEEEcCCcceEEEeCCCCCCCCCCCCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCcccccCCCc
Q 000548 627 FERGARILDGSYMTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKP 706 (1431)
Q Consensus 627 t~~~irl~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~as~~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~ 706 (1431)
....||+++.+..+.++.-. +.-+.-+.+...+..-++.||+|-+|.... ..-.+. ..++
T Consensus 23 ~D~~IRvf~~~e~~~Ei~e~-----------~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiK-------SK~~ 82 (111)
T PF14783_consen 23 DDFEIRVFKGDEIVAEITET-----------DKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIK-------SKNQ 82 (111)
T ss_pred CCcEEEEEeCCcEEEEEecc-----------cceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeec-------cCCC
Confidence 35678888887766666542 222445566677888899999999986532 212211 2555
Q ss_pred eEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeEEE
Q 000548 707 VSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEI 765 (1431)
Q Consensus 707 i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I 765 (1431)
+.|+..|+-+. ....=++++|.||.|++
T Consensus 83 ~~~~~~~D~~g-------------------------------dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 83 VTSMAFYDING-------------------------------DGVPELIVGWSNGKVEV 110 (111)
T ss_pred eEEEEEEcCCC-------------------------------CCceEEEEEecCCeEEe
Confidence 78887765431 22346788999999875
No 50
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.56 E-value=79 Score=38.75 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=59.2
Q ss_pred cEEEEcCCeEEEEEEEEeccCCccccCCccccccccccccccceEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEE
Q 000548 57 NLVVTAANVIEIYVVRVQEEGSKESKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILA 136 (1431)
Q Consensus 57 nLvvak~~~Leiy~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~ 136 (1431)
.|+|--.+.|.||.+... +|..++ ....+|+++.+|.+.-+.-+|..-.+.+.. ++|.|.|=
T Consensus 90 ~LaVLhP~kl~vY~v~~~-~g~~~~--------------g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~---~~~~IcVQ 151 (418)
T PF14727_consen 90 QLAVLHPRKLSVYSVSLV-DGTVEH--------------GNQYQLELIYEHSLQRTAYNMCCGPFGGVK---GRDFICVQ 151 (418)
T ss_pred eEEEecCCEEEEEEEEec-CCCccc--------------CcEEEEEEEEEEecccceeEEEEEECCCCC---CceEEEEE
Confidence 799999999999999532 231111 123679999999999999999998888752 58999999
Q ss_pred eccceEEEEEEe
Q 000548 137 FEDAKISVLEFD 148 (1431)
Q Consensus 137 ~~~~klsil~~d 148 (1431)
+-||+|++.+-|
T Consensus 152 S~DG~L~~feqe 163 (418)
T PF14727_consen 152 SMDGSLSFFEQE 163 (418)
T ss_pred ecCceEEEEeCC
Confidence 999999998875
No 51
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=87.17 E-value=59 Score=37.29 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=62.4
Q ss_pred EEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEE--EeccccEEEEeeecc----CCccEE
Q 000548 1169 IASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLS--WKEQGAQLNLLAKDF----GSLDCF 1242 (1431)
Q Consensus 1169 ~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~--~~~~~~~l~~~arD~----~~~~vt 1242 (1431)
++.+++|.+|.+...-|..+-...+ ..|-..++..|-||++.-.---|.++. |.. ++.+.++.|=+ +.--|+
T Consensus 205 as~dt~i~lw~lkGq~L~~idtnq~-~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-dG~fqev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 205 ASLDTKICLWDLKGQLLQSIDTNQS-SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-DGTFQEVKRVFSLKGHQSAVL 282 (420)
T ss_pred ecCCCcEEEEecCCceeeeeccccc-cccceeeCCCCcEEEEecCCCCceEEEEEecc-Ccchhhhhhhheeccchhhee
Confidence 5567888888888554555555555 556666777777887765555444443 332 44555555543 345688
Q ss_pred EEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1243 ATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1243 a~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+.+|--+... ++..-++|...++..
T Consensus 283 ~~aFsn~S~r--~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 283 AAAFSNSSTR--AVTVSKDGKWRIWDT 307 (420)
T ss_pred eeeeCCCcce--eEEEecCCcEEEeec
Confidence 9998434334 788899999999864
No 52
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=86.79 E-value=28 Score=38.60 Aligned_cols=158 Identities=17% Similarity=0.225 Sum_probs=94.9
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEc-cccCeEEEEeC--CeEEEEEccC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALA-SLQGHLLIASG--PKIILHKWTG 1182 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~-~~g~V~al~-~~~g~Ll~~vg--~~l~v~~~~~ 1182 (1431)
.+.+|+++. .-.|.+|++......| +...+ ...-|+++. +..|+-...-| ..+.||++..
T Consensus 51 dk~~LAaa~----------~qhvRlyD~~S~np~P------v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 51 DKKDLAAAG----------NQHVRLYDLNSNNPNP------VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred Ccchhhhcc----------CCeeEEEEccCCCCCc------eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 356777765 4578999998643322 22233 346678776 34677666544 5789999976
Q ss_pred CeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCC
Q 000548 1183 TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQK 1262 (1431)
Q Consensus 1183 ~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~g 1262 (1431)
-...+.-.... |+-.+.+.....-+++||----|.+....+..-.-.++-.|- ..+.++....|++. ++++...|
T Consensus 115 ~~~qR~~~~~s-pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--~~i~sl~v~~dgsm--l~a~nnkG 189 (311)
T KOG0315|consen 115 LSCQRNYQHNS-PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--TSIQSLTVMPDGSM--LAAANNKG 189 (311)
T ss_pred cccchhccCCC-CcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--cceeeEEEcCCCcE--EEEecCCc
Confidence 32222222223 444444454555889999888888876554322222333333 45666665678776 78999999
Q ss_pred cEEEEeeCCCCCCCccCceEEEEEEEe
Q 000548 1263 NIQIFYYAPKMSESWKGQKLLSRAEFH 1289 (1431)
Q Consensus 1263 Nl~vl~~~p~~~~s~~~~~L~~~~~fh 1289 (1431)
|.++.+...... ...|+++..|.
T Consensus 190 ~cyvW~l~~~~~----~s~l~P~~k~~ 212 (311)
T KOG0315|consen 190 NCYVWRLLNHQT----ASELEPVHKFQ 212 (311)
T ss_pred cEEEEEccCCCc----cccceEhhhee
Confidence 999998654221 22355555543
No 53
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=86.45 E-value=74 Score=37.28 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=45.6
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCc-eEEEcc-ccCeEEEEeCC---eEEEEEccC
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGA-ISALAS-LQGHLLIASGP---KIILHKWTG 1182 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~-V~al~~-~~g~Ll~~vg~---~l~v~~~~~ 1182 (1431)
..|+-+. +++-| .|-+|.|.+.. .+|.++..+++.|- +..+.- -.|++|++.|+ .|.+|+.++
T Consensus 255 GrFLYas---NRg~d-----sI~~f~V~~~~----g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 255 GRFLYAS---NRGHD-----SIAVFSVDPDG----GKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEe---cCCCC-----eEEEEEEcCCC----CEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 3577665 23322 78899998753 35999998988887 666542 23555555554 589999986
Q ss_pred C--eeeeeE
Q 000548 1183 T--ELNGIA 1189 (1431)
Q Consensus 1183 ~--~L~~~a 1189 (1431)
+ +|....
T Consensus 323 ~TG~L~~~~ 331 (346)
T COG2706 323 ETGRLTLLG 331 (346)
T ss_pred CCceEEecc
Confidence 4 455443
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.10 E-value=1.1e+02 Score=39.01 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=47.9
Q ss_pred CCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-c
Q 000548 1086 QSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-Q 1164 (1431)
Q Consensus 1086 ~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~ 1164 (1431)
.-||.+..|+.+ ++...+++|.|. .+++.+|+... ..-++++ -.+..|.++... .
T Consensus 321 G~ndEI~Dm~~l-------G~e~~~laVATN---------s~~lr~y~~~~------~~c~ii~--GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 321 GYNDEILDMKFL-------GPEESHLAVATN---------SPELRLYTLPT------SYCQIIP--GHTEAVLSLDVWSS 376 (775)
T ss_pred CCchhheeeeec-------CCccceEEEEeC---------CCceEEEecCC------CceEEEe--Cchhheeeeeeccc
Confidence 457788888754 234689999995 67888885532 1133332 245688888844 4
Q ss_pred CeEEEEeC--CeEEEEEccC
Q 000548 1165 GHLLIASG--PKIILHKWTG 1182 (1431)
Q Consensus 1165 g~Ll~~vg--~~l~v~~~~~ 1182 (1431)
|-|++..+ +++++|++++
T Consensus 377 g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred CcEEEEecCCceEEEEEecC
Confidence 55666655 6899999954
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=65 Score=35.97 Aligned_cols=69 Identities=25% Similarity=0.311 Sum_probs=56.0
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc---cCeEEEEeC-CeEEEEEccCC
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL---QGHLLIASG-PKIILHKWTGT 1183 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~---~g~Ll~~vg-~~l~v~~~~~~ 1183 (1431)
..+|+|.|+.++| ....|||+++++... ..+.++.+.++...++.++-- .+.+++|+| ..|.+|++...
T Consensus 21 ~nrLavAt~q~yG--l~G~G~L~ile~~~~-----~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~ 93 (311)
T KOG0277|consen 21 ENRLAVATAQHYG--LAGNGRLFILEVTDP-----KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP 93 (311)
T ss_pred cchhheeehhhcc--cccCceEEEEecCCC-----CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC
Confidence 4588999998876 677999999999732 249999999999999999843 457888988 68999998643
No 56
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=85.71 E-value=5.5 Score=47.33 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=95.9
Q ss_pred ceEEEEEeeeecCCCcccceeEE-EEEEeecCCCCCccEEEEEE-EeecCceEEEccccC---eEEEEeCCeEEEEEccC
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVL-LFSTGRNADNPQNLVTEVYS-KELKGAISALASLQG---HLLIASGPKIILHKWTG 1182 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~-vf~i~~~~~~~~~~l~lv~~-~~~~g~V~al~~~~g---~Ll~~vg~~l~v~~~~~ 1182 (1431)
..||+-|- +|+.+ +|+... ++.++. +..+|+|.+++-..| .+.++.-.++.+|.+++
T Consensus 214 gkylatgg----------~d~~v~Iw~~~t--------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 214 GKYLATGG----------RDRHVQIWDCDT--------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred CcEEEecC----------CCceEEEecCcc--------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 45888764 45544 777753 444444 567899999995554 45667778999999987
Q ss_pred CeeeeeEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeC
Q 000548 1183 TELNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDE 1260 (1431)
Q Consensus 1183 ~~L~~~a~~~~~~~~i~~l~~~--~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~ 1260 (1431)
...+.. ++.. |.-|.+|... +--+-||-.-+++-+++. +++-+|+..+- .-.+-|+.| ++++. |+.+-.
T Consensus 276 ~s~vet-lyGH-qd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~---~~sidcv~~-In~~H--fvsGSd 346 (479)
T KOG0299|consen 276 LSYVET-LYGH-QDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGG---EGSIDCVAF-INDEH--FVSGSD 346 (479)
T ss_pred hHHHHH-HhCC-ccceeeechhcccceEEeccccceeEEEec-cccceeeeeCC---CCCeeeEEE-ecccc--eeeccC
Confidence 655443 3444 6677777764 345558888899999887 66677777654 345778886 78777 888889
Q ss_pred CCcEEEEee
Q 000548 1261 QKNIQIFYY 1269 (1431)
Q Consensus 1261 ~gNl~vl~~ 1269 (1431)
+|+|.+...
T Consensus 347 nG~IaLWs~ 355 (479)
T KOG0299|consen 347 NGSIALWSL 355 (479)
T ss_pred CceEEEeee
Confidence 999998864
No 57
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=85.68 E-value=10 Score=45.71 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=98.7
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecC---ceEEEcccc--CeEE-EEe-CCeEEEEEccCCe-----eeeeEeecC
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKG---AISALASLQ--GHLL-IAS-GPKIILHKWTGTE-----LNGIAFYDA 1193 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g---~V~al~~~~--g~Ll-~~v-g~~l~v~~~~~~~-----L~~~a~~~~ 1193 (1431)
.|.+.+|++.... ..++.+-.....| +|+++ .++ |.++ +|+ ...|.+|+.+... .++.|...
T Consensus 290 DgtlRiWdv~~~k----~q~qVik~k~~~g~Rv~~tsC-~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~- 363 (641)
T KOG0772|consen 290 DGTLRIWDVNNTK----SQLQVIKTKPAGGKRVPVTSC-AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP- 363 (641)
T ss_pred CCcEEEEecCCch----hheeEEeeccCCCcccCceee-ecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-
Confidence 6899999997531 2244443333333 56654 453 5544 444 4789999986432 34455433
Q ss_pred CCeeEEEEEE--eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEE------EeCCCcEE
Q 000548 1194 PPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVV------SDEQKNIQ 1265 (1431)
Q Consensus 1194 ~~~~i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~------~D~~gNl~ 1265 (1431)
+.-|++|.. .+|+++-=---.++-++..+.-..-|.....=+.+...|.|+|-.|+ .| |+. ++..|+|+
T Consensus 364 -g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kl-i~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 364 -GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KL-ILTGTSAPNGMTAGTLF 440 (641)
T ss_pred -CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eE-EEecccccCCCCCceEE
Confidence 245777664 45666543333455554443222233322223456667888885554 43 444 36688899
Q ss_pred EEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEeC
Q 000548 1266 IFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPL 1339 (1431)
Q Consensus 1266 vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl 1339 (1431)
+|. ...|+.+..+.+. -.+..+..+.|. -.+|+.|+.+|.+.++..=
T Consensus 441 f~d----------~~t~d~v~ki~i~--~aSvv~~~Whpk---------------LNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 441 FFD----------RMTLDTVYKIDIS--TASVVRCLWHPK---------------LNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred EEe----------ccceeeEEEecCC--CceEEEEeecch---------------hhheeeecCCCceEEEECc
Confidence 885 2356666555443 122233334442 3578999999998876544
No 58
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=85.36 E-value=14 Score=42.98 Aligned_cols=127 Identities=16% Similarity=0.210 Sum_probs=86.7
Q ss_pred eEEEEEEeecCCCCCccEEEEEEEeecCceEEEc-cccCeEEEEeC--CeEEEEEccCCeeeeeEeecCCCeeEEEEEE-
Q 000548 1128 RVLLFSTGRNADNPQNLVTEVYSKELKGAISALA-SLQGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNI- 1203 (1431)
Q Consensus 1128 ri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~-~~~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~- 1203 (1431)
+=++|++... + ...-.+..+..|+++. .+.|-|||.-+ .+|+||+...+....+.+..+ .-|.-+..
T Consensus 87 ~AflW~~~~g----e---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--~dieWl~WH 157 (399)
T KOG0296|consen 87 LAFLWDISTG----E---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--EDIEWLKWH 157 (399)
T ss_pred eEEEEEccCC----c---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc--CceEEEEec
Confidence 3467787652 1 1222366888999977 45777776643 799999998876655544222 23444444
Q ss_pred -eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1204 -VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1204 -~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
....++.|+---|+|+++...+ ...-.++- +...|++-+|+.|+.. ++.++.+|.|.++.
T Consensus 158 p~a~illAG~~DGsvWmw~ip~~-~~~kv~~G--h~~~ct~G~f~pdGKr--~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSG--HNSPCTCGEFIPDGKR--ILTGYDDGTIIVWN 218 (399)
T ss_pred ccccEEEeecCCCcEEEEECCCc-ceeeEecC--CCCCcccccccCCCce--EEEEecCceEEEEe
Confidence 3568889999999999876543 22223333 5567999999889888 78888899999985
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.28 E-value=58 Score=40.64 Aligned_cols=134 Identities=12% Similarity=0.188 Sum_probs=80.4
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEEeC--CeEEEEEccCCeeee-eEeecCCCeeEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIASG--PKIILHKWTGTELNG-IAFYDAPPLYVVS 1200 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g~Ll~~vg--~~l~v~~~~~~~L~~-~a~~~~~~~~i~~ 1200 (1431)
..+.|.+|++... . ..++.+ ......|++++-. .|.++++.+ ..|++|++...++.+ ...... ++-..+
T Consensus 223 ~D~tiriwd~~~~-~---~~~~~l--~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~ 295 (456)
T KOG0266|consen 223 DDKTLRIWDLKDD-G---RNLKTL--KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLA 295 (456)
T ss_pred CCceEEEeeccCC-C---eEEEEe--cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEE
Confidence 3789999999321 1 113322 3577888988832 455554443 689999999765544 333445 444445
Q ss_pred EEEeCCEEEEEeccccEEEEEEeccccE---EEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1201 LNIVKNFILLGDIHKSIYFLSWKEQGAQ---LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1201 l~~~~~~IlvGD~~~Sv~ll~~~~~~~~---l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
....+++|+.|+...=|.+ |+....+ +..+.+.-.+..++++.|--+... ++.+=.++.+.++.+
T Consensus 296 f~~d~~~l~s~s~d~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~--ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRV--WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY--LLSASLDRTLKLWDL 363 (456)
T ss_pred ECCCCCEEEEcCCCccEEE--EECCCCceeeeecccCCCCCCceeEEEECCCCcE--EEEecCCCeEEEEEc
Confidence 5556788888866444444 4555555 234444444448889998555555 555555566666554
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=85.27 E-value=34 Score=38.97 Aligned_cols=136 Identities=10% Similarity=0.142 Sum_probs=91.3
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeE--EEEeC---CeEEEEEccCCeeeeeEeecCCCeeEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHL--LIASG---PKIILHKWTGTELNGIAFYDAPPLYVV 1199 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~L--l~~vg---~~l~v~~~~~~~L~~~a~~~~~~~~i~ 1199 (1431)
+.|.+.+|++..+ ....+. ..++||.++.-+++++ +.+.| .+|..|+.... .+++.++. |--+-
T Consensus 92 ~Dk~~k~wDL~S~------Q~~~v~--~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~--~pv~t~~L-PeRvY 160 (347)
T KOG0647|consen 92 CDKQAKLWDLASG------QVSQVA--AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS--NPVATLQL-PERVY 160 (347)
T ss_pred cCCceEEEEccCC------Ceeeee--ecccceeEEEEecCCCcceeEecccccceeecccCCC--Ceeeeeec-cceee
Confidence 5788999999753 233333 3679999999888876 55556 46777877654 35666777 87888
Q ss_pred EEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCC
Q 000548 1200 SLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMS 1274 (1431)
Q Consensus 1200 ~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~ 1274 (1431)
++.+...+.+||.+-++|.++..+..+..+-.+ ..+-...+-|+....|.+. ++.+-..|-+.+...++-++
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~-~SpLk~Q~R~va~f~d~~~--~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRI-ESPLKWQTRCVACFQDKDG--FALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhh-cCcccceeeEEEEEecCCc--eEeeeecceEEEEecCCCCc
Confidence 899999999999999999998775333222111 1122222334443346555 67788999999987776444
No 61
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=85.02 E-value=15 Score=41.41 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=97.6
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc------cCeEEEEeCCeEEEEE
Q 000548 1106 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL------QGHLLIASGPKIILHK 1179 (1431)
Q Consensus 1106 ~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~------~g~Ll~~vg~~l~v~~ 1179 (1431)
..+.+|+||+-. +....+|-+..++++. ..+.....++...|++.+.-. .-.|||..|..|++|+
T Consensus 57 ~~~~rla~gS~~-----Ee~~Nkvqiv~ld~~s----~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWr 127 (364)
T KOG0290|consen 57 DKKFRLAVGSFI-----EEYNNKVQIVQLDEDS----GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWR 127 (364)
T ss_pred CcceeEEEeeec-----cccCCeeEEEEEccCC----CceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEe
Confidence 467899999854 3345788888887542 124444556888899988743 2258999999999999
Q ss_pred cc--CCeeeeeEeecC-----CCeeEEEEEE---eCCEEEEEeccccEEEEEEecc-c--cEEEEeeeccCCccEEEEEE
Q 000548 1180 WT--GTELNGIAFYDA-----PPLYVVSLNI---VKNFILLGDIHKSIYFLSWKEQ-G--AQLNLLAKDFGSLDCFATEF 1246 (1431)
Q Consensus 1180 ~~--~~~L~~~a~~~~-----~~~~i~~l~~---~~~~IlvGD~~~Sv~ll~~~~~-~--~~l~~~arD~~~~~vta~~f 1246 (1431)
.+ +.++...+.+.. ++..+|+-.- ..++|.+.-+-.-.++...... . -+-.++|.| ..|..++|
T Consensus 128 i~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD---KEV~DIaf 204 (364)
T KOG0290|consen 128 IGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD---KEVYDIAF 204 (364)
T ss_pred ccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC---cceeEEEe
Confidence 98 444444333211 2334444332 2467777666666666554432 1 145567766 67999998
Q ss_pred EecCCeeEEEEEeCCCcEEEEee
Q 000548 1247 LIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1247 l~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+-+...+ |...-.+|.+++|.+
T Consensus 205 ~~~s~~~-FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 205 LKGSRDV-FASVGADGSVRMFDL 226 (364)
T ss_pred ccCccce-EEEecCCCcEEEEEe
Confidence 5443444 677788999999875
No 62
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.48 E-value=11 Score=43.99 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=79.2
Q ss_pred ecCceEEEccccCeEEEEeC-CeEEEEEcc-----CCeeeeeEeecCCCeeEEEEEEe-CCEEEEEeccccEEEEE-Eec
Q 000548 1153 LKGAISALASLQGHLLIASG-PKIILHKWT-----GTELNGIAFYDAPPLYVVSLNIV-KNFILLGDIHKSIYFLS-WKE 1224 (1431)
Q Consensus 1153 ~~g~V~al~~~~g~Ll~~vg-~~l~v~~~~-----~~~L~~~a~~~~~~~~i~~l~~~-~~~IlvGD~~~Sv~ll~-~~~ 1224 (1431)
-.++|-.+...+|.|+.|++ ..+.+|... .++|...+... +.+.+.-... +++++.|=... +-.++ |+.
T Consensus 104 ~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~-~n~lkiwdl 180 (412)
T KOG3881|consen 104 GTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKEN-INELKIWDL 180 (412)
T ss_pred ccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhc-ccceeeeec
Confidence 35677788889999999988 578899887 45566655442 3344333322 33333354432 22222 233
Q ss_pred cccEEEEeeecc--------CCccEEEEEEEec--CCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcce
Q 000548 1225 QGAQLNLLAKDF--------GSLDCFATEFLID--GSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHV 1294 (1431)
Q Consensus 1225 ~~~~l~~~arD~--------~~~~vta~~fl~d--~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~v 1294 (1431)
+..+=+.-|+.. .|.|.+++.|+-. ... |+.+-+.+-+.+|. +.. + =.+.++|-..+.+
T Consensus 181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~--fat~T~~hqvR~YD--t~~-----q--RRPV~~fd~~E~~ 249 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYK--FATITRYHQVRLYD--TRH-----Q--RRPVAQFDFLENP 249 (412)
T ss_pred ccceeeeeccCCCCccccceeeeeeccceecCCCCCce--EEEEecceeEEEec--Ccc-----c--CcceeEeccccCc
Confidence 333444445532 4889999999544 344 88999999999874 331 1 1356777777765
Q ss_pred eEE
Q 000548 1295 TKF 1297 (1431)
Q Consensus 1295 t~~ 1297 (1431)
.+.
T Consensus 250 is~ 252 (412)
T KOG3881|consen 250 ISS 252 (412)
T ss_pred cee
Confidence 444
No 63
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=84.33 E-value=92 Score=36.53 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=88.2
Q ss_pred eeEEEEEEeecCCCCCccEEEEEEEee--cCceEEEc-cccCeEE---EEeCCeEEEEEccC--Cee---eeeE-----e
Q 000548 1127 GRVLLFSTGRNADNPQNLVTEVYSKEL--KGAISALA-SLQGHLL---IASGPKIILHKWTG--TEL---NGIA-----F 1190 (1431)
Q Consensus 1127 Gri~vf~i~~~~~~~~~~l~lv~~~~~--~g~V~al~-~~~g~Ll---~~vg~~l~v~~~~~--~~L---~~~a-----~ 1190 (1431)
=||.+|++.+. +|+......+ ...+..|. .=+|+++ .=.+++|.+|+.+. .++ ...+ |
T Consensus 167 Dri~~y~~~dg------~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 167 DRIFLYDLDDG------KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred ceEEEEEcccC------ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 38999999842 2322221111 12223332 2245433 33457888888875 233 3222 2
Q ss_pred ecCCCeeEEEEEEeCCEEEEEecc-ccEEEEEEeccccEEEEeeecc-CCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1191 YDAPPLYVVSLNIVKNFILLGDIH-KSIYFLSWKEQGAQLNLLAKDF-GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1191 ~~~~~~~i~~l~~~~~~IlvGD~~-~Sv~ll~~~~~~~~l~~~arD~-~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
...-..-...|+..|.|+++.+-. +||+.++.++..++|..++.-. .-+|--...|--+++.| +++.-+..||.+|+
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L-iaa~q~sd~i~vf~ 319 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL-IAANQKSDNITVFE 319 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE-EEEccCCCcEEEEE
Confidence 222123344556678899998875 5999999999999999887643 23333344432344444 66677788999999
Q ss_pred eCCCCCCCccCceEEEEEEEec
Q 000548 1269 YAPKMSESWKGQKLLSRAEFHV 1290 (1431)
Q Consensus 1269 ~~p~~~~s~~~~~L~~~~~fhl 1290 (1431)
.+++. | +|.....+-.
T Consensus 320 ~d~~T-----G-~L~~~~~~~~ 335 (346)
T COG2706 320 RDKET-----G-RLTLLGRYAV 335 (346)
T ss_pred EcCCC-----c-eEEecccccC
Confidence 98764 2 5666655433
No 64
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=83.74 E-value=97 Score=36.34 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=59.4
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-CeEE-EEeCCeEEEEEccCCee
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-GHLL-IASGPKIILHKWTGTEL 1185 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~-g~Ll-~~vg~~l~v~~~~~~~L 1185 (1431)
-+..++|. .-|+|.+|+... .++.|..+...+|+.|.-.+ .+|+ ++.+.+|+.|+-...+|
T Consensus 298 lpL~A~G~---------vdG~i~iyD~a~--------~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 298 LPLAACGS---------VDGTIAIYDLAA--------STLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred cchhhccc---------ccceEEEEeccc--------chhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccce
Confidence 35666665 479999999974 55566677778899998777 5666 55678899998887777
Q ss_pred eeeEe-ecCCCeeEEEEEEeCCEEE
Q 000548 1186 NGIAF-YDAPPLYVVSLNIVKNFIL 1209 (1431)
Q Consensus 1186 ~~~a~-~~~~~~~i~~l~~~~~~Il 1209 (1431)
+.... +.+ +++--.++..+++++
T Consensus 361 ~~~y~GH~~-~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 361 KFTYTGHQM-GILDFALSPQKRLVV 384 (399)
T ss_pred EEEEecCch-heeEEEEcCCCcEEE
Confidence 76554 334 555556666666665
No 65
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.51 E-value=1.5e+02 Score=39.64 Aligned_cols=187 Identities=14% Similarity=0.178 Sum_probs=118.0
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE----------EeecCce
Q 000548 1088 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS----------KELKGAI 1157 (1431)
Q Consensus 1088 ~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~----------~~~~g~V 1157 (1431)
.-.|+.++.+. .....++++|+ +.|-|.+|+=-.... .+.++|.. ..-.|.|
T Consensus 1109 ~t~Vs~l~liN------e~D~aLlLtas---------~dGvIRIwk~y~~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v 1170 (1387)
T KOG1517|consen 1109 DTRVSDLELIN------EQDDALLLTAS---------SDGVIRIWKDYADKW---KKPELVTAWSSLSDQLPGARGTGLV 1170 (1387)
T ss_pred CCccceeeeec------ccchhheeeec---------cCceEEEeccccccc---CCceeEEeeccccccCccCCCCCee
Confidence 45666666553 22457888887 578888886543221 12344331 1112477
Q ss_pred EEEccccCeEEEEeC-CeEEEEEccCCeeeeeEeecCCCeeEEEEEE---eCCEEEEEeccccEEEEEEec-cccEEEEe
Q 000548 1158 SALASLQGHLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLNI---VKNFILLGDIHKSIYFLSWKE-QGAQLNLL 1232 (1431)
Q Consensus 1158 ~al~~~~g~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~---~~~~IlvGD~~~Sv~ll~~~~-~~~~l~~~ 1232 (1431)
+.-.+.+|+|+++-+ ..|+||+..++++..---+.. .+.|++|+. .+|.|++|=.-.||-++.-+- .+..++..
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 777788999998854 456789988775544333445 667888875 479999999999998875542 34467777
Q ss_pred eeccCCc-cEEEEEEEecC-CeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEE
Q 000548 1233 AKDFGSL-DCFATEFLIDG-STLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLR 1299 (1431)
Q Consensus 1233 arD~~~~-~vta~~fl~d~-~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~ 1299 (1431)
-|-++.. .|..+.+--.+ .. ++.+-.+|.|.+++..-.-. -.-+....++..|.-.|++..
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~e--lvSgs~~G~I~~~DlR~~~~----e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGE--LVSGSQDGDIQLLDLRMSSK----ETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred ecccCCcccceeEEeecCCCcc--eeeeccCCeEEEEecccCcc----cccceeeeccccCccceeeee
Confidence 6665433 26777642211 23 78889999999987533211 123556677777887787764
No 66
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=83.33 E-value=88 Score=38.12 Aligned_cols=122 Identities=16% Similarity=0.268 Sum_probs=74.7
Q ss_pred EEccccCeEE-EEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccC
Q 000548 1159 ALASLQGHLL-IASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFG 1237 (1431)
Q Consensus 1159 al~~~~g~Ll-~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~ 1237 (1431)
|+.+.+..++ ++.-..+.+|+ ++++.=--...- |.-....+..+ .|++|-. .+-||+ ++.+...|+.+-.|..
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d-~~~~~~fhpsg-~va~Gt~-~G~w~V-~d~e~~~lv~~~~d~~ 448 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED-PAECADFHPSG-VVAVGTA-TGRWFV-LDTETQDLVTIHTDNE 448 (626)
T ss_pred EcCCChhheeeccCcceEEEcc--CCceeEEEEecC-ceeEeeccCcc-eEEEeec-cceEEE-EecccceeEEEEecCC
Confidence 3445555444 44446677887 544442222222 33333444455 6667765 455555 4677788888888954
Q ss_pred CccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000548 1238 SLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1297 (1431)
Q Consensus 1238 ~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~ 1297 (1431)
| ++++.|-.|+.. +.++-.++.|++|+.+.. |.++.+.+..+ |..|+.+
T Consensus 449 ~--ls~v~ysp~G~~--lAvgs~d~~iyiy~Vs~~------g~~y~r~~k~~-gs~ithL 497 (626)
T KOG2106|consen 449 Q--LSVVRYSPDGAF--LAVGSHDNHIYIYRVSAN------GRKYSRVGKCS-GSPITHL 497 (626)
T ss_pred c--eEEEEEcCCCCE--EEEecCCCeEEEEEECCC------CcEEEEeeeec-CceeEEe
Confidence 5 566666678887 788999999999997643 44555544444 4666543
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=80.79 E-value=31 Score=41.53 Aligned_cols=225 Identities=13% Similarity=0.183 Sum_probs=123.6
Q ss_pred CCceEEEEEecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCC-CeEEEEEeeccccccccccccccccccccc
Q 000548 965 CNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEK-NLYPLIVSVPVLKPLNQVLSLLIDQEVGHQ 1043 (1431)
Q Consensus 965 ~~~g~i~~~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~-~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~ 1043 (1431)
|...|+...=+..|++--... .--..+..++..|.-+-+||.. ++|++..+. ..+
T Consensus 269 ~g~~fLS~sfD~~lKlwDtET------G~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd---~ki--------------- 324 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTET------GQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSD---KKI--------------- 324 (503)
T ss_pred cCCeeeeeecceeeeeecccc------ceEEEEEecCCCceeeecCCCCCcEEEEecCC---CcE---------------
Confidence 555565555455666544443 3467888999999999999988 777776553 111
Q ss_pred ccCCCCCccccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCc
Q 000548 1044 IDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDV 1123 (1431)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~ 1123 (1431)
+..|-.+. +++..| .++.-|+..+.|-. .++ ++|-.+
T Consensus 325 ----------------------~~wDiRs~----kvvqeY----d~hLg~i~~i~F~~----~g~-rFissS-------- 361 (503)
T KOG0282|consen 325 ----------------------RQWDIRSG----KVVQEY----DRHLGAILDITFVD----EGR-RFISSS-------- 361 (503)
T ss_pred ----------------------EEEeccch----HHHHHH----HhhhhheeeeEEcc----CCc-eEeeec--------
Confidence 11111100 112211 12223333334431 122 232221
Q ss_pred ccceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEccccCeEE-EEeCCeEEEEEccCC-eeee-eEe--ecCCCee
Q 000548 1124 AARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALASLQGHLL-IASGPKIILHKWTGT-ELNG-IAF--YDAPPLY 1197 (1431)
Q Consensus 1124 ~~~Gri~vf~i~~~~~~~~~~l~lv~~~~-~~g~V~al~~~~g~Ll-~~vg~~l~v~~~~~~-~L~~-~a~--~~~~~~~ 1197 (1431)
.-+.+++|+..... .++++...+ ..=|..++.+..+.++ =++++.|.+|..... ++.+ +.| +.. +-|
T Consensus 362 -Ddks~riWe~~~~v-----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGy 434 (503)
T KOG0282|consen 362 -DDKSVRIWENRIPV-----PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGY 434 (503)
T ss_pred -cCccEEEEEcCCCc-----cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-cCc
Confidence 23478888886531 244444333 2345555555555443 245688888886532 2332 223 223 667
Q ss_pred EEEEEE--eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEE
Q 000548 1198 VVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIF 1267 (1431)
Q Consensus 1198 i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl 1267 (1431)
.+++.. .+.+++-||.--.+.++.|+.. +++-.-+-+ ..-|+.+.+...+..- ++.++-+|-|-+.
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~--kl~~~lkah-~~~ci~v~wHP~e~Sk-vat~~w~G~Ikiw 502 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWKTT--KLVSKLKAH-DQPCIGVDWHPVEPSK-VATCGWDGLIKIW 502 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeechhh--hhhhccccC-CcceEEEEecCCCcce-eEecccCceeEec
Confidence 777765 4679999999999999988742 222222222 2347777776555432 7788888887664
No 68
>PTZ00420 coronin; Provisional
Probab=80.58 E-value=1.1e+02 Score=39.05 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=24.4
Q ss_pred cCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEE
Q 000548 975 QGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLI 1019 (1431)
Q Consensus 975 ~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~ 1019 (1431)
++.++|-.+.... .+..+..+..+..+.++|..+.++..
T Consensus 147 DgtIrIWDl~tg~------~~~~i~~~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 147 DSFVNIWDIENEK------RAFQINMPKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred CCeEEEEECCCCc------EEEEEecCCcEEEEEECCCCCEEEEE
Confidence 4566666655432 23344445567889999988877653
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=80.58 E-value=29 Score=42.09 Aligned_cols=148 Identities=14% Similarity=0.212 Sum_probs=86.3
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecC--ceEEEc-cccCeEEEEeC--CeEEEEEccC
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKG--AISALA-SLQGHLLIASG--PKIILHKWTG 1182 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g--~V~al~-~~~g~Ll~~vg--~~l~v~~~~~ 1182 (1431)
...|+-|+ -.|.|.+|+.-.-.. +-.........+ -++||. ++.|+.|++-| ..|.+|++.+
T Consensus 329 g~~iAagc---------~DGSIQ~W~~~~~~v----~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 329 GKLIAAGC---------LDGSIQIWDKGSRTV----RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred cchhhhcc---------cCCceeeeecCCccc----ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 34577776 479999999743211 122233333333 677776 45777777666 6899999975
Q ss_pred -Ce-eeee-EeecCCCeeEEEEEEeCCEEEEEecc----ccEEEEEEeccccEEEEeee-ccCCccEEEEEEEecCCeeE
Q 000548 1183 -TE-LNGI-AFYDAPPLYVVSLNIVKNFILLGDIH----KSIYFLSWKEQGAQLNLLAK-DFGSLDCFATEFLIDGSTLS 1254 (1431)
Q Consensus 1183 -~~-L~~~-a~~~~~~~~i~~l~~~~~~IlvGD~~----~Sv~ll~~~~~~~~l~~~ar-D~~~~~vta~~fl~d~~~l~ 1254 (1431)
++ |... .....++..=.+-+....+|+.|... ..=.|+.|+ ..+|..+.+ |+..-.|..+.+...=|.
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d--~~t~d~v~ki~i~~aSvv~~~WhpkLNQ-- 471 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD--RMTLDTVYKIDISTASVVRCLWHPKLNQ-- 471 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe--ccceeeEEEecCCCceEEEEeecchhhh--
Confidence 33 2211 11111122111223334566666543 222455565 456777766 555667777776555577
Q ss_pred EEEEeCCCcEEEEeeCCCC
Q 000548 1255 LVVSDEQKNIQIFYYAPKM 1273 (1431)
Q Consensus 1255 ~i~~D~~gNl~vl~~~p~~ 1273 (1431)
|+++-.+|++++| |+|..
T Consensus 472 i~~gsgdG~~~vy-Ydp~~ 489 (641)
T KOG0772|consen 472 IFAGSGDGTAHVY-YDPNE 489 (641)
T ss_pred eeeecCCCceEEE-ECccc
Confidence 6778888999998 67754
No 70
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=80.51 E-value=1.5e+02 Score=36.35 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=110.3
Q ss_pred EEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--c----cC
Q 000548 1092 LTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--L----QG 1165 (1431)
Q Consensus 1092 ~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~--~----~g 1165 (1431)
-|+++..+.+ ...++..|+||. -.|+|.+|+-....- .--.++.+++++.||..|.. | +.
T Consensus 23 ~~l~v~~~~~--~~~~~d~IivGS---------~~G~LrIy~P~~~~~---~~~~lllE~~l~~PILqv~~G~F~s~~~~ 88 (418)
T PF14727_consen 23 GSLCVGNLDN--SPSGSDKIIVGS---------YSGILRIYDPSGNEF---QPEDLLLETQLKDPILQVECGKFVSGSED 88 (418)
T ss_pred ceEEEEcccC--CCCCccEEEEec---------cccEEEEEccCCCCC---CCccEEEEEecCCcEEEEEeccccCCCCc
Confidence 3666666653 223578999997 489999998844211 11367888999999999884 3 12
Q ss_pred -eEEEEeCCeEEEEEccC----------CeeeeeEeecCCCeeEEEEEE--e-----CCEEEEEeccccEEEEEEecccc
Q 000548 1166 -HLLIASGPKIILHKWTG----------TELNGIAFYDAPPLYVVSLNI--V-----KNFILLGDIHKSIYFLSWKEQGA 1227 (1431)
Q Consensus 1166 -~Ll~~vg~~l~v~~~~~----------~~L~~~a~~~~~~~~i~~l~~--~-----~~~IlvGD~~~Sv~ll~~~~~~~ 1227 (1431)
.|++=-=++|.||.+.. -+|...-.+.. +-..-++.+ + .++|.|=.+=-.++|+. .+.-
T Consensus 89 ~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe--qe~~ 165 (418)
T PF14727_consen 89 LQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE--QESF 165 (418)
T ss_pred ceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEe--CCcE
Confidence 23333347889999931 13444333333 333333332 1 36777755555555542 2222
Q ss_pred EEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCc-------------cCceEEEEEEEecCcce
Q 000548 1228 QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESW-------------KGQKLLSRAEFHVGAHV 1294 (1431)
Q Consensus 1228 ~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~-------------~~~~L~~~~~fhlg~~v 1294 (1431)
.|...=-++ .--....|.-.-+. |+.+.....|-.|+|.--...+. .+.++...=.|.+||.+
T Consensus 166 ~f~~~lp~~--llPgPl~Y~~~tDs--fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~ 241 (418)
T PF14727_consen 166 AFSRFLPDF--LLPGPLCYCPRTDS--FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA 241 (418)
T ss_pred EEEEEcCCC--CCCcCeEEeecCCE--EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee
Confidence 222222221 11123334333345 78888888888888743211111 46788888899999999
Q ss_pred eEEEEEe
Q 000548 1295 TKFLRLQ 1301 (1431)
Q Consensus 1295 t~~~~~~ 1301 (1431)
..+.-.+
T Consensus 242 l~i~v~~ 248 (418)
T PF14727_consen 242 LDIQVVR 248 (418)
T ss_pred EEEEEEE
Confidence 8887654
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=80.17 E-value=78 Score=35.62 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=73.6
Q ss_pred EeecCceEEEcc-ccCeEEEEeCCeEEEEEccCCeeeeeEeec----CCCeeEEEEEEeC-CEEEEEeccccE-------
Q 000548 1151 KELKGAISALAS-LQGHLLIASGPKIILHKWTGTELNGIAFYD----APPLYVVSLNIVK-NFILLGDIHKSI------- 1217 (1431)
Q Consensus 1151 ~~~~g~V~al~~-~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~----~~~~~i~~l~~~~-~~IlvGD~~~Sv------- 1217 (1431)
.+..+++..... -+|+|++|....+.++++...++...+... . ......+.+.. ..++++|.....
T Consensus 37 ~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~-~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 37 IDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGVP-FNRPNDVAVDPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCSC-TEEEEEEEE-TTS-EEEEEECCBCTTCGGSE
T ss_pred EecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCcc-cCCCceEEEcCCCCEEEEecCCCcccccccc
Confidence 344456666555 468999999999999998877666655541 3 56677777654 469999987642
Q ss_pred EEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeC-CCcEEEEeeC
Q 000548 1218 YFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDE-QKNIQIFYYA 1270 (1431)
Q Consensus 1218 ~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~-~gNl~vl~~~ 1270 (1431)
.+++++.+ .+...+..+... .-.+.|-.|++. +.++|. .+.|+.+.++
T Consensus 116 ~v~~~~~~-~~~~~~~~~~~~--pNGi~~s~dg~~--lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVADGLGF--PNGIAFSPDGKT--LYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEEETT-SEEEEEEEEESS--EEEEEEETTSSE--EEEEETTTTEEEEEEEE
T ss_pred ceEEECCC-CeEEEEecCccc--ccceEECCcchh--eeecccccceeEEEecc
Confidence 57777776 677777666432 234454457777 455776 4446656554
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=79.26 E-value=1.5e+02 Score=35.60 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=73.5
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEc-cccCe-EEEEeCCe-EEEEEccCCeeeeeEeecC-CCeeEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALA-SLQGH-LLIASGPK-IILHKWTGTELNGIAFYDA-PPLYVV 1199 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~-~~g~V~al~-~~~g~-Ll~~vg~~-l~v~~~~~~~L~~~a~~~~-~~~~i~ 1199 (1431)
..|-+.+|++.+... +...+ ..|+|.+|. +=||| |+++.... |++|++.+.+..+.--++. .+.-..
T Consensus 367 ~d~~vkiwdlks~~~--------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~ 438 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTN--------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSL 438 (506)
T ss_pred CCceEEEEEcCCccc--------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeE
Confidence 478999999986321 22222 468999988 23775 66666665 9999998755333222332 123344
Q ss_pred EEEEeCCEEEEEeccccEEEEEEecccc--EEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEE
Q 000548 1200 SLNIVKNFILLGDIHKSIYFLSWKEQGA--QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIF 1267 (1431)
Q Consensus 1200 ~l~~~~~~IlvGD~~~Sv~ll~~~~~~~--~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl 1267 (1431)
++..-|.++.+| -..+.++.|+.... +.+..-.|.. --.+.+.| -+... ++..+-.+.++.++
T Consensus 439 ~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v~F-g~~aq-~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 439 SFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIKELADHS-GLSTGVRF-GEHAQ-YLASTSMDAILRLY 503 (506)
T ss_pred EEcCCCCeEEee--cceeEEEEEecccccceeeehhhhcc-cccceeee-cccce-EEeeccchhheEEe
Confidence 455567788887 67788888874332 2222222222 24567776 33333 13333334455444
No 73
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=78.94 E-value=73 Score=39.02 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=89.9
Q ss_pred ceEEEEEccccceEEEe-ccceeeeecccccccccceEEEeeecCCcEEEEEecCcEEEEcCCcceEEEeCCCCCCCCCC
Q 000548 576 HAYLIISLEARTMVLET-ADLLTEVTESVDYFVQGRTIAAGNLFGRRRVIQVFERGARILDGSYMTQDLSFGPSNSESGS 654 (1431)
Q Consensus 576 ~~yLvlS~~~~T~Vl~~-g~~~eev~~~~gF~~~~~TI~~g~l~~~~~ivQVt~~~irl~~~~~~~~~~~~~~~~~~~~~ 654 (1431)
+.+..++..+.-++... +..+.. ..-+.+..+-+.++-..++..+|-+|-++|.++.........++.
T Consensus 375 ~~~~t~g~Dd~l~~~~~~~~~~t~---~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~-------- 443 (603)
T KOG0318|consen 375 GELFTIGWDDTLRVISLKDNGYTK---SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIG-------- 443 (603)
T ss_pred CcEEEEecCCeEEEEecccCcccc---cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccc--------
Confidence 34556666665555553 223321 112445555556666645678999999999999865444444441
Q ss_pred CCCCccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCcccccCCCceEEEEeeccCCCCcccccccccccccCC
Q 000548 655 GSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTG 734 (1431)
Q Consensus 655 ~~~~~~I~~as~~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~ 734 (1431)
-....++.+-...+++|-..||.+.+|.+..... .+...- + .-..+|++++...|.
T Consensus 444 --y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~--~-~h~a~iT~vaySpd~------------------ 499 (603)
T KOG0318|consen 444 --YESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKL--L-EHRAAITDVAYSPDG------------------ 499 (603)
T ss_pred --cccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeee--e-cccCCceEEEECCCC------------------
Confidence 2223455555677999999999999988753221 111110 0 125678888763332
Q ss_pred ccccccCCCCCCCCCCcEEEEEEecCCeEEEEECCCCce
Q 000548 735 VGEAIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNC 773 (1431)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~ 773 (1431)
.|+|.|..++.+-+|++.+.+.
T Consensus 500 -----------------~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 500 -----------------AYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred -----------------cEEEEeccCCcEEEEEcccCce
Confidence 2899999999999999987544
No 74
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=78.46 E-value=1.2e+02 Score=34.31 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=94.5
Q ss_pred EEEeecCceEEEccccCeEEEEe--CCeEEEEEccCCeeeeeEeecCCCeeEEEEE--EeCCEEEEEeccccEEEEEEec
Q 000548 1149 YSKELKGAISALASLQGHLLIAS--GPKIILHKWTGTELNGIAFYDAPPLYVVSLN--IVKNFILLGDIHKSIYFLSWKE 1224 (1431)
Q Consensus 1149 ~~~~~~g~V~al~~~~g~Ll~~v--g~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~--~~~~~IlvGD~~~Sv~ll~~~~ 1224 (1431)
|++.+.+.+.+ .+|....+. -..+++|++...+= ..-|.-. ..-|.++. ..+..|+-|-.-+.+-+. +.
T Consensus 62 HsH~v~dv~~s---~dg~~alS~swD~~lrlWDl~~g~~-t~~f~GH-~~dVlsva~s~dn~qivSGSrDkTiklw--nt 134 (315)
T KOG0279|consen 62 HSHFVSDVVLS---SDGNFALSASWDGTLRLWDLATGES-TRRFVGH-TKDVLSVAFSTDNRQIVSGSRDKTIKLW--NT 134 (315)
T ss_pred cceEecceEEc---cCCceEEeccccceEEEEEecCCcE-EEEEEec-CCceEEEEecCCCceeecCCCcceeeee--ee
Confidence 56666555433 455444333 37899999986421 1222222 23444444 444577778888888775 44
Q ss_pred cccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCc--ceeEEEEEee
Q 000548 1225 QGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGA--HVTKFLRLQM 1302 (1431)
Q Consensus 1225 ~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~--~vt~~~~~~~ 1302 (1431)
-......+++|...-||+|+.|...++...|+.+-.++-+-+...+. +++ .+.|+|+ .+|.+- .
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~--------~~l---~~~~~gh~~~v~t~~---v 200 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN--------CQL---RTTFIGHSGYVNTVT---V 200 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC--------cch---hhccccccccEEEEE---E
Confidence 46677778888778899999997776555477777788888875432 222 2233433 233322 1
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEeCChHh
Q 000548 1303 LATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDELT 1343 (1431)
Q Consensus 1303 ~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl~e~~ 1343 (1431)
.| +...+.+|+.+|.+ +|-.+.+..
T Consensus 201 Sp---------------DGslcasGgkdg~~-~LwdL~~~k 225 (315)
T KOG0279|consen 201 SP---------------DGSLCASGGKDGEA-MLWDLNEGK 225 (315)
T ss_pred CC---------------CCCEEecCCCCceE-EEEEccCCc
Confidence 12 13567778777776 667777644
No 75
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=78.39 E-value=32 Score=39.63 Aligned_cols=142 Identities=14% Similarity=0.138 Sum_probs=84.0
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCe--EEEE-e-CCeEEEEEccC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGH--LLIA-S-GPKIILHKWTG 1182 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~--Ll~~-v-g~~l~v~~~~~ 1182 (1431)
..+|+|+|- .+|-|+++++.+..- -+.+ .-.-++|..|.....+ ||.+ . -+.|++|.+..
T Consensus 104 ~~p~la~~G---------~~GvIrVid~~~~~~-----~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 104 GNPFLAAGG---------YLGVIRVIDVVSGQC-----SKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCeeEEeec---------ceeEEEEEecchhhh-----ccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 568999886 489999999976310 0100 1234555555544332 4433 3 37899999987
Q ss_pred Ceeeee-EeecCCCeeEEEE--EEeCCEEEEEeccccEEEEEEe--ccccEEEEe-----------------------ee
Q 000548 1183 TELNGI-AFYDAPPLYVVSL--NIVKNFILLGDIHKSIYFLSWK--EQGAQLNLL-----------------------AK 1234 (1431)
Q Consensus 1183 ~~L~~~-a~~~~~~~~i~~l--~~~~~~IlvGD~~~Sv~ll~~~--~~~~~l~~~-----------------------ar 1234 (1431)
...+.+ +=+....--|.++ +..+++|+-+-+-.|+.+.+.+ +-.++++.. .+
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 764432 1111112234444 4467899999999999998876 222222222 56
Q ss_pred ccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1235 DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1235 D~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
|.+...|-|+.|+.| ++.+=.-+|-.++-.
T Consensus 248 diHrnyVDCvrw~gd-----~ilSkscenaI~~w~ 277 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGD-----FILSKSCENAIVCWK 277 (385)
T ss_pred ccccchHHHHHHHhh-----heeecccCceEEEEe
Confidence 667777777776442 566666666555443
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=77.99 E-value=1.3e+02 Score=34.18 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=51.0
Q ss_pred cC-eEEEEe--CCeEEEEEccCCeeee-eEee-----cCCCeeEEE--EEEeCCEEEEEecc-ccEEEEEEeccccEEEE
Q 000548 1164 QG-HLLIAS--GPKIILHKWTGTELNG-IAFY-----DAPPLYVVS--LNIVKNFILLGDIH-KSIYFLSWKEQGAQLNL 1231 (1431)
Q Consensus 1164 ~g-~Ll~~v--g~~l~v~~~~~~~L~~-~a~~-----~~~~~~i~~--l~~~~~~IlvGD~~-~Sv~ll~~~~~~~~l~~ 1231 (1431)
+| +|+++. +++|++|++...++.. ..+. .. ...... +...+++++++..- ..+.+ |+.+..++..
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v--~d~~~~~~~~ 243 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAV--VDAKTYEVLD 243 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEE--EECCCCcEEE
Confidence 44 454443 5789999998654332 2111 01 111222 33446676665332 34544 4544444443
Q ss_pred eeeccCCccEEEEEEEecCCeeEEEEE-eCCCcEEEEee
Q 000548 1232 LAKDFGSLDCFATEFLIDGSTLSLVVS-DEQKNIQIFYY 1269 (1431)
Q Consensus 1232 ~arD~~~~~vta~~fl~d~~~l~~i~~-D~~gNl~vl~~ 1269 (1431)
... ....+.++.|-.++.. ++++ ...|.|.++..
T Consensus 244 ~~~--~~~~~~~~~~~~~g~~--l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 244 YLL--VGQRVWQLAFTPDEKY--LLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEE--eCCCcceEEECCCCCE--EEEEcCCCCeEEEEEC
Confidence 221 2235667776556666 4444 56889998864
No 77
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=77.95 E-value=61 Score=37.11 Aligned_cols=141 Identities=16% Similarity=0.189 Sum_probs=76.8
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc--CeEEEEeCCeEEEEEccCCe
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ--GHLLIASGPKIILHKWTGTE 1184 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~--g~Ll~~vg~~l~v~~~~~~~ 1184 (1431)
....++|||. .| |++|++... . ...+.+... +|+.|..+. +.|++=.|+.|++|.+..=.
T Consensus 6 ~~~~L~vGt~---------~G-l~~~~~~~~-~---~~~~i~~~~----~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 6 WGDRLLVGTE---------DG-LYVYDLSDP-S---KPTRILKLS----SITQLSVLPELNLLLVLSDGQLYVYDLDSLE 67 (275)
T ss_pred CCCEEEEEEC---------CC-EEEEEecCC-c---cceeEeecc----eEEEEEEecccCEEEEEcCCccEEEEchhhc
Confidence 3578999983 56 999999321 1 112222221 278888776 67777778999999996311
Q ss_pred ee----------------eeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEE-EEeeeccCCccEEEEEEE
Q 000548 1185 LN----------------GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQL-NLLAKDFGSLDCFATEFL 1247 (1431)
Q Consensus 1185 L~----------------~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l-~~~arD~~~~~vta~~fl 1247 (1431)
.. .....+....+...-...+.+.++.=+.+.+.+++|+....++ ..+..=..|..+.++.|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~ 147 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL 147 (275)
T ss_pred cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe
Confidence 00 1111122122221122234566666667799999998754444 333332345667777763
Q ss_pred ecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1248 IDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1248 ~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
++. ++++-+. ...++..+
T Consensus 148 --~~~--i~v~~~~-~f~~idl~ 165 (275)
T PF00780_consen 148 --GNK--ICVGTSK-GFYLIDLN 165 (275)
T ss_pred --CCE--EEEEeCC-ceEEEecC
Confidence 455 3444332 24444443
No 78
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=77.41 E-value=41 Score=43.69 Aligned_cols=134 Identities=17% Similarity=0.276 Sum_probs=92.9
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEe-CCeEEEEEccCCeee-eeEeecCCCeeEEEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIAS-GPKIILHKWTGTELN-GIAFYDAPPLYVVSLN 1202 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~v-g~~l~v~~~~~~~L~-~~a~~~~~~~~i~~l~ 1202 (1431)
+.|-|++|+.....+.|+. +.. ....|+++....++|++|. .+.|.+|.++..+-. -.+.+.. |.-.+...
T Consensus 33 sdg~ir~~~~~sd~e~P~t-i~~-----~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl-p~r~~~v~ 105 (933)
T KOG1274|consen 33 SDGDIRKWKTNSDEEEPET-IDI-----SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL-PIRDLAVS 105 (933)
T ss_pred CCCceEEeecCCcccCCch-hhc-----cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeec-cceEEEEe
Confidence 4788999988653234443 221 5568889988888887665 478889999854321 1233334 66777777
Q ss_pred EeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1203 IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1203 ~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
..|++|+.|---..|-++.-+.....+...+-| -.|+++.|-..++- +.+++-+|++.+++..
T Consensus 106 g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~---apVl~l~~~p~~~f--LAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 106 GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD---APVLQLSYDPKGNF--LAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cCCcEEEeecCceeEEEEeccccchheeecccC---CceeeeeEcCCCCE--EEEEecCceEEEEEcc
Confidence 778899999888889888876666665554433 46889987444444 7788999999999864
No 79
>PTZ00421 coronin; Provisional
Probab=77.00 E-value=1.4e+02 Score=37.69 Aligned_cols=145 Identities=6% Similarity=0.054 Sum_probs=74.3
Q ss_pred eEEEEEeeeecCCCcccceeEEEEEEeecCCCC--CccEEEEEEEeecCceEEEccc--cCeEEEE--eCCeEEEEEccC
Q 000548 1109 TLLAIGTAYVQGEDVAARGRVLLFSTGRNADNP--QNLVTEVYSKELKGAISALASL--QGHLLIA--SGPKIILHKWTG 1182 (1431)
Q Consensus 1109 ~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~--~~~l~lv~~~~~~g~V~al~~~--~g~Ll~~--vg~~l~v~~~~~ 1182 (1431)
.+|+.|. ..|.|.+|++....... ...+..+ ....+.|.+++-- .+.++++ ....|.+|++..
T Consensus 89 ~~LaSgS---------~DgtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 89 QKLFTAS---------EDGTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER 157 (493)
T ss_pred CEEEEEe---------CCCEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC
Confidence 4777775 36899999996421100 0011111 2345778877643 2334433 347899999987
Q ss_pred CeeeeeEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEE-e
Q 000548 1183 TELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVS-D 1259 (1431)
Q Consensus 1183 ~~L~~~a~~~~~~~~i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~-D 1259 (1431)
.+.... +... ...|.++.. .+++++.|..-+.|.++.. ...+...-........+..+.|..+.+.+ +.++ +
T Consensus 158 g~~~~~-l~~h-~~~V~sla~spdG~lLatgs~Dg~IrIwD~--rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt~G~s 232 (493)
T PTZ00421 158 GKAVEV-IKCH-SDQITSLEWNLDGSLLCTTSKDKKLNIIDP--RDGTIVSSVEAHASAKSQRCLWAKRKDLI-ITLGCS 232 (493)
T ss_pred CeEEEE-EcCC-CCceEEEEEECCCCEEEEecCCCEEEEEEC--CCCcEEEEEecCCCCcceEEEEcCCCCeE-EEEecC
Confidence 653322 1112 334555544 5778888887777777543 33332221112222223334444455553 2222 2
Q ss_pred --CCCcEEEEee
Q 000548 1260 --EQKNIQIFYY 1269 (1431)
Q Consensus 1260 --~~gNl~vl~~ 1269 (1431)
.++.|.++..
T Consensus 233 ~s~Dr~VklWDl 244 (493)
T PTZ00421 233 KSQQRQIMLWDT 244 (493)
T ss_pred CCCCCeEEEEeC
Confidence 3566777654
No 80
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.92 E-value=39 Score=43.39 Aligned_cols=171 Identities=18% Similarity=0.177 Sum_probs=99.8
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCC
Q 000548 1063 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1142 (1431)
Q Consensus 1063 ~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~ 1142 (1431)
.++..+||.. .+|..+.. |...=. ...++.+ ....+|||=.. |+. .-..+-.|+...
T Consensus 349 ~~ve~YD~~~--~~W~~~a~--M~~~R~--~~~v~~l-------~g~iYavGG~d--g~~--~l~svE~YDp~~------ 405 (571)
T KOG4441|consen 349 SSVERYDPRT--NQWTPVAP--MNTKRS--DFGVAVL-------DGKLYAVGGFD--GEK--SLNSVECYDPVT------ 405 (571)
T ss_pred ceEEEecCCC--CceeccCC--ccCccc--cceeEEE-------CCEEEEEeccc--ccc--ccccEEEecCCC------
Confidence 3667888874 47887553 222222 2223333 24577777543 110 011222222221
Q ss_pred ccEEEEEEEeecCceEEEccccCeEEEEeC--------CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-Eec
Q 000548 1143 NLVTEVYSKELKGAISALASLQGHLLIASG--------PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDI 1213 (1431)
Q Consensus 1143 ~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg--------~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~ 1213 (1431)
.+...+......-.=.+++.++|+|.+.-| ..+..|+...++...++-+.. +-.-..+.+.+++|++ |..
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a~~~~~iYvvGG~ 484 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVAVLNGKIYVVGGF 484 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEEEECCEEEEECCc
Confidence 346666665555555566778888887777 567789988877766666544 3333346677777765 553
Q ss_pred ccc---EEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEe
Q 000548 1214 HKS---IYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD 1259 (1431)
Q Consensus 1214 ~~S---v~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D 1259 (1431)
... -++-+|+++.++-..++.-..++.-..+. +.++.+++++++
T Consensus 485 ~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~--~~~~~ly~vGG~ 531 (571)
T KOG4441|consen 485 DGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV--VLGGKLYAVGGF 531 (571)
T ss_pred cCCCccceEEEEcCCCCceeEcccCccccccccEE--EECCEEEEEecc
Confidence 321 11566899999988887777777666665 344677667663
No 81
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=76.91 E-value=60 Score=35.92 Aligned_cols=146 Identities=12% Similarity=0.177 Sum_probs=91.5
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEee---cCCCCCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccC
Q 000548 1106 ENETLLAIGTAYVQGEDVAARGRVLLFSTGR---NADNPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTG 1182 (1431)
Q Consensus 1106 ~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~---~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~ 1182 (1431)
+.+.|+++|.. -|.|-+|.+++ ....++.|++.+.+...+||+|.+...+.+|+.|--..|+=|+|.+
T Consensus 20 p~~~~l~agn~---------~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 20 PSKQYLFAGNL---------FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred CcceEEEEecC---------CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence 35679999974 58999999975 2223345788888888999999999888888877667888888853
Q ss_pred -------Ceeee------eEeecCCCeeEEEEEE--eCC-EEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEE
Q 000548 1183 -------TELNG------IAFYDAPPLYVVSLNI--VKN-FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEF 1246 (1431)
Q Consensus 1183 -------~~L~~------~a~~~~~~~~i~~l~~--~~~-~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~f 1246 (1431)
|+|.+ +....+ | -|.++.. ..| .++.| =++ .++.++-|.+++...-|-+.. .+-++.
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~ev-P-eINam~ldP~enSi~~Ag--GD~-~~y~~dlE~G~i~r~~rGHtD-YvH~vv- 163 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEV-P-EINAMWLDPSENSILFAG--GDG-VIYQVDLEDGRIQREYRGHTD-YVHSVV- 163 (325)
T ss_pred hhhhccchhhhhhcCccccCcccC-C-ccceeEeccCCCcEEEec--CCe-EEEEEEecCCEEEEEEcCCcc-eeeeee-
Confidence 22221 111112 2 1333332 344 44443 223 366778888888877664332 233332
Q ss_pred E-ecCCeeEEEEEeCCCcEEEEee
Q 000548 1247 L-IDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1247 l-~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
. -.... |+.+-.+|-+++...
T Consensus 164 ~R~~~~q--ilsG~EDGtvRvWd~ 185 (325)
T KOG0649|consen 164 GRNANGQ--ILSGAEDGTVRVWDT 185 (325)
T ss_pred ecccCcc--eeecCCCccEEEEec
Confidence 1 12234 788888898888764
No 82
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=76.77 E-value=20 Score=45.30 Aligned_cols=148 Identities=11% Similarity=0.065 Sum_probs=82.5
Q ss_pred ceEEEEEeeeecCCCcccceeEEE-EEEeecCCCCCccEEEE-EEEeecCceEEEc--cccCeEEEEeC-CeEEEEEcc-
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLL-FSTGRNADNPQNLVTEV-YSKELKGAISALA--SLQGHLLIASG-PKIILHKWT- 1181 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~v-f~i~~~~~~~~~~l~lv-~~~~~~g~V~al~--~~~g~Ll~~vg-~~l~v~~~~- 1181 (1431)
...++||| .-|.|+. .+-.-.++. ....+.+ +-.-..|+|+++. .|--+++.++| -.+++|.-+
T Consensus 360 p~~FiVGT---------e~G~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~ 429 (555)
T KOG1587|consen 360 PNHFIVGT---------EEGKVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV 429 (555)
T ss_pred CceEEEEc---------CCcEEEEEeccCCcccc-cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC
Confidence 35689999 3566655 222222111 0111222 2233478999998 45555555555 588888877
Q ss_pred CCeeeeeEe-ecCCCeeEEEEEEe---CCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEE
Q 000548 1182 GTELNGIAF-YDAPPLYVVSLNIV---KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVV 1257 (1431)
Q Consensus 1182 ~~~L~~~a~-~~~~~~~i~~l~~~---~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~ 1257 (1431)
... +.-+ -+. +.+++++.-. --.++++|.+.=+.+..+. .+...++++......+....+--....+ +.+
T Consensus 430 ~~~--Pl~~~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl--~~~~~Pv~s~~~~~~~l~~~~~s~~g~~-lav 503 (555)
T KOG1587|consen 430 IAS--PLLSLDSS-PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL--QDDEEPVLSQKVCSPALTRVRWSPNGKL-LAV 503 (555)
T ss_pred CCC--cchhhhhc-cceeeeeEEcCcCceEEEEEcCCCceehhhhh--ccccCCcccccccccccceeecCCCCcE-EEE
Confidence 322 2112 223 4456665543 2467788888888776553 3344445554333344444432332343 788
Q ss_pred EeCCCcEEEEeeCC
Q 000548 1258 SDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1258 ~D~~gNl~vl~~~p 1271 (1431)
+|..|+++++++++
T Consensus 504 Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 504 GDANGTTHILKLSE 517 (555)
T ss_pred ecCCCcEEEEEcCc
Confidence 99999999999754
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=76.28 E-value=1.6e+02 Score=35.38 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=52.8
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc
Q 000548 1064 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN 1143 (1431)
Q Consensus 1064 ~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~ 1143 (1431)
.|++.|..+. + ..-.|+.++.. ++.+.|. ++.-|+|+++ ..|.+.+|++.+..
T Consensus 370 ~vkiwdlks~--~----~~a~Fpght~~--vk~i~Fs-----ENGY~Lat~a---------dd~~V~lwDLRKl~----- 422 (506)
T KOG0289|consen 370 VVKIWDLKSQ--T----NVAKFPGHTGP--VKAISFS-----ENGYWLATAA---------DDGSVKLWDLRKLK----- 422 (506)
T ss_pred eEEEEEcCCc--c----ccccCCCCCCc--eeEEEec-----cCceEEEEEe---------cCCeEEEEEehhhc-----
Confidence 4566665432 1 22246664443 4556774 3556888877 36779999997531
Q ss_pred cEEEEEEEeecCceEEEc-cccCeEEEEeCCeEEEEEccC
Q 000548 1144 LVTEVYSKELKGAISALA-SLQGHLLIASGPKIILHKWTG 1182 (1431)
Q Consensus 1144 ~l~lv~~~~~~g~V~al~-~~~g~Ll~~vg~~l~v~~~~~ 1182 (1431)
.++-+...+-+ .|-+++ ...|.+++..|+.|+||...+
T Consensus 423 n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 423 NFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred ccceeeccccc-cceeEEEcCCCCeEEeecceeEEEEEec
Confidence 23333333333 454444 345655555599999998874
No 84
>PHA02713 hypothetical protein; Provisional
Probab=75.99 E-value=51 Score=42.28 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=59.3
Q ss_pred eEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-Eeccc---------------------cEEEEEEeccccEEEE
Q 000548 1174 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHK---------------------SIYFLSWKEQGAQLNL 1231 (1431)
Q Consensus 1174 ~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~---------------------Sv~ll~~~~~~~~l~~ 1231 (1431)
.+..|+...++...++-+.. +..-.++.+.+++|+| |-... .=++..|+++.++-..
T Consensus 368 sve~Ydp~~~~W~~~~~mp~-~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPI-ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred eEEEEECCCCeEEECCCCCc-ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 47789988777666655444 3333445567777765 53211 2247789999888888
Q ss_pred eeeccCCccEEEEEEEecCCeeEEEEEeCC-CcE--EEEeeCCCC
Q 000548 1232 LAKDFGSLDCFATEFLIDGSTLSLVVSDEQ-KNI--QIFYYAPKM 1273 (1431)
Q Consensus 1232 ~arD~~~~~vta~~fl~d~~~l~~i~~D~~-gNl--~vl~~~p~~ 1273 (1431)
++.=..+|.-.++. .++ +.|+++++-.. ..+ .+.+|+|+.
T Consensus 447 v~~m~~~r~~~~~~-~~~-~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 447 LPNFWTGTIRPGVV-SHK-DDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cCCCCcccccCcEE-EEC-CEEEEEeCCCCCCccceeEEEecCCC
Confidence 88666666544444 244 57877766322 112 356888875
No 85
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=75.33 E-value=69 Score=35.57 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=58.4
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCC
Q 000548 1063 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1142 (1431)
Q Consensus 1063 ~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~ 1142 (1431)
++|...|+. +|..+-+|+++-| +.+.+|. .+++++|-|- .-+.++.|++....
T Consensus 205 ssV~Fwdak----sf~~lKs~k~P~n-----V~SASL~-----P~k~~fVaGg---------ed~~~~kfDy~Tge---- 257 (334)
T KOG0278|consen 205 SSVKFWDAK----SFGLLKSYKMPCN-----VESASLH-----PKKEFFVAGG---------EDFKVYKFDYNTGE---- 257 (334)
T ss_pred ceeEEeccc----cccceeeccCccc-----ccccccc-----CCCceEEecC---------cceEEEEEeccCCc----
Confidence 467788874 6677777777654 3344453 3556777664 25678888886521
Q ss_pred ccEEEEEEEeecCceEEEccccCeEEEEeC---CeEEEEEccC
Q 000548 1143 NLVTEVYSKELKGAISALASLQGHLLIASG---PKIILHKWTG 1182 (1431)
Q Consensus 1143 ~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg---~~l~v~~~~~ 1182 (1431)
.+.. |.+..-|||.|+.---+-.+.|+| .+|++|+..-
T Consensus 258 -Ei~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 258 -EIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred -eeee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 1222 345677999999855455556666 4799999863
No 86
>PHA03098 kelch-like protein; Provisional
Probab=75.06 E-value=49 Score=42.19 Aligned_cols=98 Identities=9% Similarity=-0.003 Sum_probs=58.5
Q ss_pred EccccCeEEEEeC--------CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-Eecc-c-----cEEEEEEec
Q 000548 1160 LASLQGHLLIASG--------PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIH-K-----SIYFLSWKE 1224 (1431)
Q Consensus 1160 l~~~~g~Ll~~vg--------~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~-~-----Sv~ll~~~~ 1224 (1431)
.+.++|+|.+.-| +.+..|+...++....+-... +.+-.+..+.++.|+| |=.- . --.+..|++
T Consensus 385 ~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCceEEEECCEEEEECCccCCCCCcccceEEEecC
Confidence 3456777766544 357788887766655544333 3334455566776665 4211 0 112677888
Q ss_pred cccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeC
Q 000548 1225 QGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDE 1260 (1431)
Q Consensus 1225 ~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~ 1260 (1431)
+.++-..++.-..+++-.++. .+ ++.|+++++..
T Consensus 464 ~~~~W~~~~~~~~~r~~~~~~-~~-~~~iyv~GG~~ 497 (534)
T PHA03098 464 VTNKWTELSSLNFPRINASLC-IF-NNKIYVVGGDK 497 (534)
T ss_pred CCCceeeCCCCCcccccceEE-EE-CCEEEEEcCCc
Confidence 888888877666666655554 24 46787777655
No 87
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.65 E-value=1.5e+02 Score=36.99 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=83.0
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEE--eCCeEEEEEccCCeeeeeEeecCCCeeEEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIA--SGPKIILHKWTGTELNGIAFYDAPPLYVVSL 1201 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g~Ll~~--vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l 1201 (1431)
..+-++++....... ..++.+ ....-.|+.++-. .|+.+++ ...+|++|+........+.+... ..+|+++
T Consensus 179 ~~~~i~~~~~~~~~~---~~~~~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH-~~~v~~~ 252 (456)
T KOG0266|consen 179 SDGLIRIWKLEGIKS---NLLREL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH-STYVTSV 252 (456)
T ss_pred CCCcEEEeecccccc---hhhccc--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC-CCceEEE
Confidence 356777777733210 011111 3445566666643 4544433 34688999994432233334444 5566655
Q ss_pred E--EeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCC
Q 000548 1202 N--IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1202 ~--~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p 1271 (1431)
. ..+++|+.|..-..|.+..... .+....-.... -.|+++.|--|++. ++.++.+|+|.++....
T Consensus 253 ~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs-~~is~~~f~~d~~~--l~s~s~d~~i~vwd~~~ 319 (456)
T KOG0266|consen 253 AFSPDGNLLVSGSDDGTVRIWDVRT--GECVRKLKGHS-DGISGLAFSPDGNL--LVSASYDGTIRVWDLET 319 (456)
T ss_pred EecCCCCEEEEecCCCcEEEEeccC--CeEEEeeeccC-CceEEEEECCCCCE--EEEcCCCccEEEEECCC
Confidence 5 4678999999999999976543 44444333333 37999998666666 78889999999987543
No 88
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.17 E-value=19 Score=42.63 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=53.2
Q ss_pred eEEEEEE--eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1197 YVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1197 ~i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
-|+++.+ .|+|+.+|.+--||.++. ...-+...+.+-.+...||.++|..|...+.=+.+|..-+++.+..|
T Consensus 283 siSsl~VS~dGkf~AlGT~dGsVai~~--~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGSVAIYD--AKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCcEEEEE--eceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 3556665 478999999988888864 34556777778888889999999888776545666777677666543
No 89
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=71.70 E-value=2.6e+02 Score=34.70 Aligned_cols=211 Identities=15% Similarity=0.150 Sum_probs=103.9
Q ss_pred eEEEEeCCCceEEEEeCCceEEeeccCCCceEEEeeccCCCCCceEEEEEecCeEEEEE-cCCCCccCCCcceEEeeCCC
Q 000548 924 QGFFLSGSRPCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQ-LPSGSTYDNYWPVQKIPLKA 1002 (1431)
Q Consensus 924 ~~Vf~~g~rP~~i~~~~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~I~~-l~~~~~~d~~~~ir~i~L~~ 1002 (1431)
..|.+||+..+.||...+ ++-... +.-.. ..|.. .+.|+...+.+.+.|.+ +. .-.++++++..
T Consensus 45 r~v~V~g~geY~iyt~~~-~r~k~~---G~g~~-~vw~~---~n~yAv~~~~~~I~I~kn~~-------~~~~k~i~~~~ 109 (443)
T PF04053_consen 45 RFVLVCGDGEYEIYTALA-WRNKAF---GSGLS-FVWSS---RNRYAVLESSSTIKIYKNFK-------NEVVKSIKLPF 109 (443)
T ss_dssp SEEEEEETTEEEEEETTT-TEEEEE---EE-SE-EEE-T---SSEEEEE-TTS-EEEEETTE-------E-TT-----SS
T ss_pred CEEEEEcCCEEEEEEccC-Cccccc---CceeE-EEEec---CccEEEEECCCeEEEEEcCc-------cccceEEcCCc
Confidence 677779999988887432 111110 11111 11222 35567777677788853 22 23567888888
Q ss_pred cccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeeee
Q 000548 1003 TPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRAT 1082 (1431)
Q Consensus 1003 tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~ 1082 (1431)
++.+|.+ ..++++... ..|.++|-. +...+.+
T Consensus 110 ~~~~If~---G~LL~~~~~-----------------------------------------~~i~~yDw~----~~~~i~~ 141 (443)
T PF04053_consen 110 SVEKIFG---GNLLGVKSS-----------------------------------------DFICFYDWE----TGKLIRR 141 (443)
T ss_dssp -EEEEE----SSSEEEEET-----------------------------------------TEEEEE-TT----T--EEEE
T ss_pred ccceEEc---CcEEEEECC-----------------------------------------CCEEEEEhh----HcceeeE
Confidence 8888888 445554211 135666643 3356666
Q ss_pred EECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeec-----CCCC-CccEEEEEEEeecCc
Q 000548 1083 IPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRN-----ADNP-QNLVTEVYSKELKGA 1156 (1431)
Q Consensus 1083 ~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~-----~~~~-~~~l~lv~~~~~~g~ 1156 (1431)
++.. .++.|.+. +..+++++-| +-.+++++...+ ++.+ +..+..+|+ +...
T Consensus 142 i~v~------~vk~V~Ws-----~~g~~val~t----------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~ 198 (443)
T PF04053_consen 142 IDVS------AVKYVIWS-----DDGELVALVT----------KDSIYILKYNLEAVAAIPEEGVEDAFELIHE--ISER 198 (443)
T ss_dssp ESS-------E-EEEEE------TTSSEEEEE-----------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S-
T ss_pred EecC------CCcEEEEE-----CCCCEEEEEe----------CCeEEEEEecchhcccccccCchhceEEEEE--ecce
Confidence 6654 24555553 2356888776 446777777643 2222 224777765 4566
Q ss_pred eEEEccccCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEe
Q 000548 1157 ISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWK 1223 (1431)
Q Consensus 1157 V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~ 1223 (1431)
|.+.+-.++-++-...+.|.. +-..+---.+.++. |.|+.......|++++-|-...|.-+..+
T Consensus 199 IkSg~W~~d~fiYtT~~~lkY--l~~Ge~~~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 199 IKSGCWVEDCFIYTTSNHLKY--LVNGETGIIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp -SEEEEETTEEEEE-TTEEEE--EETTEEEEEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred eEEEEEEcCEEEEEcCCeEEE--EEcCCcceEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 666666666666666665544 55555566777788 88887776656788887766666555544
No 90
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.58 E-value=13 Score=43.51 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=71.1
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCC
Q 000548 1063 YEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQ 1142 (1431)
Q Consensus 1063 ~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~ 1142 (1431)
+.||++|+..+ =..+.+|.|. |.+++.. .+. ....+|.+|+ ++|.|-.|+...
T Consensus 226 hqvR~YDt~~q---RRPV~~fd~~--E~~is~~--~l~-----p~gn~Iy~gn---------~~g~l~~FD~r~------ 278 (412)
T KOG3881|consen 226 HQVRLYDTRHQ---RRPVAQFDFL--ENPISST--GLT-----PSGNFIYTGN---------TKGQLAKFDLRG------ 278 (412)
T ss_pred eeEEEecCccc---CcceeEeccc--cCcceee--eec-----CCCcEEEEec---------ccchhheecccC------
Confidence 46889998632 2456666665 5655432 232 2346788888 488999998864
Q ss_pred ccEEEEEEEeecCceEEEccccC-eEEEEeC--CeEEEEEccCCeeeeeEeecC
Q 000548 1143 NLVTEVYSKELKGAISALASLQG-HLLIASG--PKIILHKWTGTELNGIAFYDA 1193 (1431)
Q Consensus 1143 ~~l~lv~~~~~~g~V~al~~~~g-~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~ 1193 (1431)
.++--..-..+.|.+.+|....+ .+++..| .-|+||+.+..+|+-+++...
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 22333334678999999987765 7887777 678999999887877776655
No 91
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=70.99 E-value=33 Score=39.33 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=57.7
Q ss_pred CccEEEEEEeCCEEEEEEeCCcEEEEEecCCCceEEeecCcccccCCCceEEEEeeccCCCCcccccccccccccCCccc
Q 000548 658 NSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1431)
Q Consensus 658 ~~~I~~as~~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1431)
..+|.+.+++.||++=.-+|.+|.+|.+... .+++.. + .-.+.|.|+.+|.+-
T Consensus 43 ~~sitavAVs~~~~aSGssDetI~IYDm~k~---~qlg~l--l-~HagsitaL~F~~~~--------------------- 95 (362)
T KOG0294|consen 43 AGSITALAVSGPYVASGSSDETIHIYDMRKR---KQLGIL--L-SHAGSITALKFYPPL--------------------- 95 (362)
T ss_pred ccceeEEEecceeEeccCCCCcEEEEeccch---hhhcce--e-ccccceEEEEecCCc---------------------
Confidence 3469999999999998888889999876432 121111 1 125678888775442
Q ss_pred cccCCCCCCCCCCcEEEEEEecCCeEEEEECCCCceeEEe
Q 000548 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1431)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~v~~~ 777 (1431)
+.-+|.-|.+||.+.||+..++.++...
T Consensus 96 ------------S~shLlS~sdDG~i~iw~~~~W~~~~sl 123 (362)
T KOG0294|consen 96 ------------SKSHLLSGSDDGHIIIWRVGSWELLKSL 123 (362)
T ss_pred ------------chhheeeecCCCcEEEEEcCCeEEeeee
Confidence 1228888999999999999998876654
No 92
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=70.91 E-value=1.3e+02 Score=32.73 Aligned_cols=129 Identities=17% Similarity=0.253 Sum_probs=74.8
Q ss_pred cceEEeeCCC--cccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCCCccccccccccceEEEEEecc
Q 000548 993 WPVQKIPLKA--TPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEP 1070 (1431)
Q Consensus 993 ~~ir~i~L~~--tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~v~lid~ 1070 (1431)
-++..+++.. ..+.++++|.++.++|+.... + ..+++++.
T Consensus 49 ~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~---~-----------------------------------~~v~lyd~ 90 (194)
T PF08662_consen 49 IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSM---P-----------------------------------AKVTLYDV 90 (194)
T ss_pred CccceeeccCCCceEEEEECcCCCEEEEEEccC---C-----------------------------------cccEEEcC
Confidence 3677777754 489999999999999874310 0 03445554
Q ss_pred CCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE
Q 000548 1071 DRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS 1150 (1431)
Q Consensus 1071 ~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~ 1150 (1431)
. .+.+. .|.. ....+ +.+. ....|+++|..- ...|.|.+|++.+ .+.+.+
T Consensus 91 ~-----~~~i~--~~~~-~~~n~---i~ws-----P~G~~l~~~g~~------n~~G~l~~wd~~~--------~~~i~~ 140 (194)
T PF08662_consen 91 K-----GKKIF--SFGT-QPRNT---ISWS-----PDGRFLVLAGFG------NLNGDLEFWDVRK--------KKKIST 140 (194)
T ss_pred c-----ccEeE--eecC-CCceE---EEEC-----CCCCEEEEEEcc------CCCcEEEEEECCC--------CEEeec
Confidence 1 23332 3332 22232 3343 234588877532 2358999999963 555666
Q ss_pred EeecCceEEEc-cccCe-EEEEe-------CCeEEEEEccCCeeeeeEe
Q 000548 1151 KELKGAISALA-SLQGH-LLIAS-------GPKIILHKWTGTELNGIAF 1190 (1431)
Q Consensus 1151 ~~~~g~V~al~-~~~g~-Ll~~v-------g~~l~v~~~~~~~L~~~a~ 1190 (1431)
.+...+ +.++ .-+|+ |+++. .+.+.||.+.++.|.+..+
T Consensus 141 ~~~~~~-t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~ 188 (194)
T PF08662_consen 141 FEHSDA-TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF 188 (194)
T ss_pred cccCcE-EEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence 665553 4444 33564 44442 4667889998776655443
No 93
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=69.90 E-value=54 Score=41.38 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=60.0
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEE-eecCceEEEc----cccCeEEEEeC--CeEEEEE
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALA----SLQGHLLIASG--PKIILHK 1179 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~-~~~g~V~al~----~~~g~Ll~~vg--~~l~v~~ 1179 (1431)
.-.|++-|- .-|.|.||++.+ |+++... ..+.-|.||. ....+|||+.+ .-|+||+
T Consensus 470 ~gqhLAsGD---------r~GnlrVy~Lq~--------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 470 DGQHLASGD---------RGGNLRVYDLQE--------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred CcceecccC---------ccCceEEEEehh--------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 346888775 579999999975 3332222 2344555555 23457877765 3567898
Q ss_pred ccCCeeeeeEeecCCCeeEEEEEEeCC----EEEEEeccccEEEEEEe
Q 000548 1180 WTGTELNGIAFYDAPPLYVVSLNIVKN----FILLGDIHKSIYFLSWK 1223 (1431)
Q Consensus 1180 ~~~~~L~~~a~~~~~~~~i~~l~~~~~----~IlvGD~~~Sv~ll~~~ 1223 (1431)
.+.+-+ .+..++.....|++++...+ +.+-.-+-||+.|=.++
T Consensus 533 v~rny~-l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q 579 (1080)
T KOG1408|consen 533 VKRNYD-LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ 579 (1080)
T ss_pred cccccc-hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc
Confidence 887633 33334332667888886532 44445567888776665
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.62 E-value=49 Score=37.77 Aligned_cols=128 Identities=15% Similarity=0.214 Sum_probs=86.2
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-C-eE-EEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEE
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-G-HL-LIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLN 1202 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~-g-~L-l~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~ 1202 (1431)
.|.+++|++... + .+.--...+..|||.++|--+ | ++ ..+.-..+.+|++...++..++-++. |.- .+.
T Consensus 49 D~tVR~wevq~~-g----~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~-pvk--t~~ 120 (347)
T KOG0647|consen 49 DGTVRIWEVQNS-G----QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDA-PVK--TCH 120 (347)
T ss_pred CCceEEEEEecC-C----cccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccc-cee--EEE
Confidence 678999999763 1 122233456889999999654 3 33 34455789999999999999999998 644 444
Q ss_pred EeCC----EEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1203 IVKN----FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1203 ~~~~----~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
.++. .++-|---|.+-|..- ++-.+++.=--|--|+|++. +. .- .+++-.+.+|.++.+
T Consensus 121 wv~~~~~~cl~TGSWDKTlKfWD~----R~~~pv~t~~LPeRvYa~Dv-~~-pm--~vVata~r~i~vynL 183 (347)
T KOG0647|consen 121 WVPGMNYQCLVTGSWDKTLKFWDT----RSSNPVATLQLPERVYAADV-LY-PM--AVVATAERHIAVYNL 183 (347)
T ss_pred EecCCCcceeEecccccceeeccc----CCCCeeeeeeccceeeehhc-cC-ce--eEEEecCCcEEEEEc
Confidence 4443 4466777777777532 23334445455777888883 33 33 567788889998876
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=69.43 E-value=2.7e+02 Score=33.99 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=84.2
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC--eEEEEeCCeEEEEEcc-CCeeeeeEeecCCCeeEEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG--HLLIASGPKIILHKWT-GTELNGIAFYDAPPLYVVSL 1201 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g--~Ll~~vg~~l~v~~~~-~~~L~~~a~~~~~~~~i~~l 1201 (1431)
..|.|.+|+.... -..+.+....-||-.++.+.+ .++.|-|+.+.||++- ..+++..-+. . +-.||||
T Consensus 174 YDg~vrl~DtR~~-------~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~-H-~KtVTcL 244 (487)
T KOG0310|consen 174 YDGKVRLWDTRSL-------TSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN-H-NKTVTCL 244 (487)
T ss_pred CCceEEEEEeccC-------CceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc-c-cceEEEE
Confidence 4799999999642 144666778889999998754 5667778999999997 4554433221 2 3458887
Q ss_pred EEeC--CEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1202 NIVK--NFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1202 ~~~~--~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
.... .+++-|-+-+=|-++.+ ...+++- .=-.|-.|.++..-.|+.+ ++++=.+|-+.+-+
T Consensus 245 ~l~s~~~rLlS~sLD~~VKVfd~--t~~Kvv~--s~~~~~pvLsiavs~dd~t--~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRHVKVFDT--TNYKVVH--SWKYPGPVLSIAVSPDDQT--VVIGMSNGLVSIRR 307 (487)
T ss_pred EeecCCceEeecccccceEEEEc--cceEEEE--eeecccceeeEEecCCCce--EEEecccceeeeeh
Confidence 7654 68888888887877653 3444432 2223455777773234455 56666777776653
No 96
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.41 E-value=56 Score=37.42 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCceeeeeEE-----CCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEE
Q 000548 1075 GPWQTRATIP-----MQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVY 1149 (1431)
Q Consensus 1075 ~~~~~~~~~~-----l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~ 1149 (1431)
..|...+.+. ...++...++.++.. +.-..++|+||. .|+.+-.++.++|+.++.. +|...+.
T Consensus 150 s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~----sr~~~p~iAvgs----~e~a~~~~~~~Iye~~e~~----rKw~kva 217 (361)
T KOG2445|consen 150 SQWTLQHEIQNVIDPPGKNKQPCFCVSWNP----SRMHEPLIAVGS----DEDAPHLNKVKIYEYNENG----RKWLKVA 217 (361)
T ss_pred ccchhhhhhhhccCCcccccCcceEEeecc----ccccCceEEEEc----ccCCccccceEEEEecCCc----ceeeeeh
Confidence 3566544333 224454444433432 234579999998 4578889999999998742 3444333
Q ss_pred EE-eecCceEEEcc--ccC--e--EEEEeCCeEEEEEccCC
Q 000548 1150 SK-ELKGAISALAS--LQG--H--LLIASGPKIILHKWTGT 1183 (1431)
Q Consensus 1150 ~~-~~~g~V~al~~--~~g--~--Ll~~vg~~l~v~~~~~~ 1183 (1431)
+- +...||++|+- --| | |.+|.+.-|+||.++..
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~ 258 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVA 258 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeec
Confidence 32 56789999982 223 3 34455555999999753
No 97
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.23 E-value=3.7e+02 Score=35.39 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=19.9
Q ss_pred cEEEEEEeCCEEEEEEeCCcEEEE
Q 000548 660 TVLSVSIADPYVLLGMSDGSIRLL 683 (1431)
Q Consensus 660 ~I~~as~~d~~vll~~~~g~i~~l 683 (1431)
.|.+++....-|++...+|.++.|
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~L 50 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVIL 50 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEe
Confidence 577777778889999999998875
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=69.12 E-value=97 Score=37.38 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=90.6
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC---CeEEEEEccC-CeeeeeEeecCCCeeEEEE
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG---PKIILHKWTG-TELNGIAFYDAPPLYVVSL 1201 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg---~~l~v~~~~~-~~L~~~a~~~~~~~~i~~l 1201 (1431)
...+.+|.+..- .-++.+ +...+.|.+|....--=++++| .++++|++.+ .+|.-.+- ...+-++
T Consensus 265 Drsvkvw~~~~~-----s~vetl--yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~----~~sidcv 333 (479)
T KOG0299|consen 265 DRSVKVWSIDQL-----SYVETL--YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG----EGSIDCV 333 (479)
T ss_pred CCceEEEehhHh-----HHHHHH--hCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCC----CCCeeeE
Confidence 456777777641 112222 3356788888877543344555 6899999964 44554321 2223333
Q ss_pred EEeC-CEEEEEeccccEEEEEEecccc-EEEEeeecc--------CCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCC
Q 000548 1202 NIVK-NFILLGDIHKSIYFLSWKEQGA-QLNLLAKDF--------GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1202 ~~~~-~~IlvGD~~~Sv~ll~~~~~~~-~l~~~arD~--------~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p 1271 (1431)
..++ +-++.|-.--+|.|+.+....- -...+|.-. ++.|++++. ++-+..| ++.+--+|++.+....+
T Consensus 334 ~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla-~i~~sdL-~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 334 AFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA-VIPGSDL-LASGSWSGCVRLWKIED 411 (479)
T ss_pred EEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeE-ecccCce-EEecCCCCceEEEEecC
Confidence 3332 3445566666777765532111 111222221 235999999 4666665 56677799999998654
Q ss_pred CCCCCccCceEEEEEEEecCcceeEEE
Q 000548 1272 KMSESWKGQKLLSRAEFHVGAHVTKFL 1298 (1431)
Q Consensus 1272 ~~~~s~~~~~L~~~~~fhlg~~vt~~~ 1298 (1431)
.- ..+....++.+...||++.
T Consensus 412 g~------r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 412 GL------RAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred Cc------cccceeeecccccEEEEEE
Confidence 32 2477888888888898887
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=68.91 E-value=2.1e+02 Score=32.46 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=25.6
Q ss_pred cCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEE
Q 000548 975 QGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPL 1018 (1431)
Q Consensus 975 ~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v 1018 (1431)
++.+++..+... -.++.+..+..|+.++++|..+.+++
T Consensus 10 d~~v~~~d~~t~------~~~~~~~~~~~~~~l~~~~dg~~l~~ 47 (300)
T TIGR03866 10 DNTISVIDTATL------EVTRTFPVGQRPRGITLSKDGKLLYV 47 (300)
T ss_pred CCEEEEEECCCC------ceEEEEECCCCCCceEECCCCCEEEE
Confidence 456666655432 25677777777889999998776544
No 100
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=68.51 E-value=3 Score=52.85 Aligned_cols=91 Identities=15% Similarity=-0.031 Sum_probs=66.7
Q ss_pred eEEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEeCCCCCeeEEeeeeecCcccccccCCCccccC
Q 000548 100 SLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFAR 179 (1431)
Q Consensus 100 ~L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~~klsil~~d~~~~~l~t~Slh~~E~~~~~~~~~g~~~~~~ 179 (1431)
-|.+..+.+.||+|. +..+.-++. + .-.++-||++.+|||+.. +-+||++|+- ...-.-....
T Consensus 88 ~lrf~sq~n~f~Tis-lhyyeGKfk----g----ksLvelak~stle~D~~s----scaLlfneDi----~~flpfhvnk 150 (1319)
T COG5161 88 LLRFDSQANEFRTIS-LHYYEGKFK----G----KSLVELAKFSTLEFDIRS----SCALLFNEDI----GNFLPFHVNK 150 (1319)
T ss_pred EEEehhhcccceeEE-EeeeccccC----C----chhhhhhhhhheeeccCc----cchhhhhhhh----hhcccccccC
Confidence 488888899999998 887765543 3 334788999999999986 4578998883 1111111122
Q ss_pred CCeEEECCCCcEEEEEecCceEEEEeCc
Q 000548 180 GPLVKVDPQGRCGGVLVYGLQMIILKAS 207 (1431)
Q Consensus 180 ~~~l~vDP~~Rc~~l~~~~~~L~ilp~~ 207 (1431)
+....|||+.-|.++......+.|+|..
T Consensus 151 ndddev~~d~D~~~~~~~~~h~~i~psq 178 (1319)
T COG5161 151 NDDDEVRIDVDLGMFQMSKRHFSIFPSQ 178 (1319)
T ss_pred CccccccccccccHHHHHHHHhhcCCCC
Confidence 3567899999999999999999998853
No 101
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=68.20 E-value=1.1e+02 Score=30.06 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=48.0
Q ss_pred eEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC-eEEE
Q 000548 1091 ALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG-HLLI 1169 (1431)
Q Consensus 1091 v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g-~Ll~ 1169 (1431)
|.||+.+.+. ++.+..|+|||. ...|.+|+=. +++++....+.|++|+.+.+ ++..
T Consensus 2 V~al~~~d~d----~dg~~eLlvGs~---------D~~IRvf~~~----------e~~~Ei~e~~~v~~L~~~~~~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFD----GDGENELLVGSD---------DFEIRVFKGD----------EIVAEITETDKVTSLCSLGGGRFAY 58 (111)
T ss_pred eeEEEEEecC----CCCcceEEEecC---------CcEEEEEeCC----------cEEEEEecccceEEEEEcCCCEEEE
Confidence 6788888774 445688999984 4466666533 35777778899999998754 5555
Q ss_pred Ee-CCeEEEEEccC
Q 000548 1170 AS-GPKIILHKWTG 1182 (1431)
Q Consensus 1170 ~v-g~~l~v~~~~~ 1182 (1431)
|. |.+|-+|+-..
T Consensus 59 ~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ 72 (111)
T ss_pred EecCCEEEEEeCcc
Confidence 54 56888886543
No 102
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=67.88 E-value=33 Score=42.69 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=59.8
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcccc-C-eEEEEeCCeEEEEEccC-
Q 000548 1106 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQ-G-HLLIASGPKIILHKWTG- 1182 (1431)
Q Consensus 1106 ~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~-g-~Ll~~vg~~l~v~~~~~- 1182 (1431)
..++.++|=|+.. -=.++.+--+. -+........|-|+|-|--+ | ||++|+|+.++-|-|++
T Consensus 122 Pk~~iL~VLT~~d---------vSV~~sV~~d~------srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 122 PKKAILTVLTARD---------VSVLPSVHCDS------SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CCCceEEEEecCc---------eeEeeeeeeCC------ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4567888877532 22344443221 22233446789999988654 3 99999999999999984
Q ss_pred -CeeeeeEee---cCCCeeEEEEEEeCC-EEEEE
Q 000548 1183 -TELNGIAFY---DAPPLYVVSLNIVKN-FILLG 1211 (1431)
Q Consensus 1183 -~~L~~~a~~---~~~~~~i~~l~~~~~-~IlvG 1211 (1431)
|.|.+.+|. +. ..||.+|....| .|.|+
T Consensus 187 qKtL~~CsfcPVFdv-~~~Icsi~AT~dsqVAva 219 (671)
T PF15390_consen 187 QKTLHRCSFCPVFDV-GGYICSIEATVDSQVAVA 219 (671)
T ss_pred hhhhhhCCcceeecC-CCceEEEEEeccceEEEE
Confidence 568888884 55 789999887544 44443
No 103
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.60 E-value=1.3e+02 Score=37.71 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=84.1
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc--cccCeEEEEeCCeE----------EEEEccCCeeeeeEeecC
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA--SLQGHLLIASGPKI----------ILHKWTGTELNGIAFYDA 1193 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~--~~~g~Ll~~vg~~l----------~v~~~~~~~L~~~a~~~~ 1193 (1431)
+-.|++|.+.. .+++++....+++-+.++. ..+++-+.++.+++ .+|+..++++.+++....
T Consensus 183 raNl~L~~~~~------~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi 256 (545)
T PF11768_consen 183 RANLHLLSCSG------GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI 256 (545)
T ss_pred hccEEEEEecC------CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE
Confidence 34555555543 3577777777776665544 23567777777764 579999888998887543
Q ss_pred -CCeeEE--EEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1194 -PPLYVV--SLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1194 -~~~~i~--~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+++.++ +....++++++|-.-.||.++.-. ......++- +.-.+.+....++.- |+++...|-|.+|..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~---~~~t~~~ka--~~~P~~iaWHp~gai--~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTT---RGVTLLAKA--EFIPTLIAWHPDGAI--FVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcC---CCeeeeeee--cccceEEEEcCCCcE--EEEEcCCceEEEEEe
Confidence 133343 444567899999999999886432 234444432 222344454456544 888999999999874
No 104
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=67.10 E-value=2.3e+02 Score=32.28 Aligned_cols=154 Identities=17% Similarity=0.203 Sum_probs=91.1
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEc-cccC
Q 000548 1088 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALA-SLQG 1165 (1431)
Q Consensus 1088 ~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~-~~g~V~al~-~~~g 1165 (1431)
.|.|.|++... ...+.++|.++. .+-+.+|+... +++.+... ..|-|+++. +-+|
T Consensus 148 ~~WVscvrfsP-------~~~~p~Ivs~s~--------DktvKvWnl~~--------~~l~~~~~gh~~~v~t~~vSpDG 204 (315)
T KOG0279|consen 148 REWVSCVRFSP-------NESNPIIVSASW--------DKTVKVWNLRN--------CQLRTTFIGHSGYVNTVTVSPDG 204 (315)
T ss_pred cCcEEEEEEcC-------CCCCcEEEEccC--------CceEEEEccCC--------cchhhccccccccEEEEEECCCC
Confidence 57788876432 123556666653 46778888753 33333222 467777776 3577
Q ss_pred eEEEEeC--CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCC-EEEEEeccccEEEEEEec----cccEEEEeeecc--
Q 000548 1166 HLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKN-FILLGDIHKSIYFLSWKE----QGAQLNLLAKDF-- 1236 (1431)
Q Consensus 1166 ~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~-~IlvGD~~~Sv~ll~~~~----~~~~l~~~arD~-- 1236 (1431)
.|.+.-| .++++|++.+++- .-.++. ...|.++....| +.++.=.-.||-++.... ++.++..++-..
T Consensus 205 slcasGgkdg~~~LwdL~~~k~--lysl~a-~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEGKN--LYSLEA-FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred CEEecCCCCceEEEEEccCCce--eEeccC-CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccccccc
Confidence 8877755 5789999987642 223444 555667776666 444455556766654322 122333333211
Q ss_pred CCccEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1237 GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1237 ~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
..-.++++.+--|+.+ +++++.++-|.+.+.
T Consensus 282 ~~~~clslaws~dG~t--Lf~g~td~~irv~qv 312 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQT--LFAGYTDNVIRVWQV 312 (315)
T ss_pred CCcEEEEEEEcCCCcE--EEeeecCCcEEEEEe
Confidence 1234566666567888 688999999998864
No 105
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=66.87 E-value=1.1e+02 Score=39.35 Aligned_cols=188 Identities=13% Similarity=0.153 Sum_probs=105.6
Q ss_pred EEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecC----C
Q 000548 1064 EVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNA----D 1139 (1431)
Q Consensus 1064 ~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~----~ 1139 (1431)
.++.+||.+ ..|..+....-... -.+++++ +...+|||=-.. ....--.+..|+...+. .
T Consensus 302 ~ve~yd~~~--~~w~~~a~m~~~r~--~~~~~~~---------~~~lYv~GG~~~---~~~~l~~ve~YD~~~~~W~~~a 365 (571)
T KOG4441|consen 302 SVECYDPKT--NEWSSLAPMPSPRC--RVGVAVL---------NGKLYVVGGYDS---GSDRLSSVERYDPRTNQWTPVA 365 (571)
T ss_pred eeEEecCCc--CcEeecCCCCcccc--cccEEEE---------CCEEEEEccccC---CCcccceEEEecCCCCceeccC
Confidence 567888874 36887664432222 2233322 124666663221 01122334444443210 0
Q ss_pred CCCccEEEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE--E-eccc-
Q 000548 1140 NPQNLVTEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL--G-DIHK- 1215 (1431)
Q Consensus 1140 ~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv--G-D~~~- 1215 (1431)
+-....-...-....|.+|++.+++|.=- -+++..|+...++...++-+.. +-+-....+.+++|++ | |...
T Consensus 366 ~M~~~R~~~~v~~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 366 PMNTKRSDFGVAVLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred CccCccccceeEEECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCcc
Confidence 00111122333455666666666653211 1357789988888888887777 7777788888887765 4 2222
Q ss_pred c-EEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCc-E-EEEeeCCCC
Q 000548 1216 S-IYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKN-I-QIFYYAPKM 1273 (1431)
Q Consensus 1216 S-v~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gN-l-~vl~~~p~~ 1273 (1431)
. =++..|++..++=..++.=..+|.-..+.. ++ +.|+++++...-+ + .+-+|+|..
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~-~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LN-GKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEE-EC-CEEEEECCccCCCccceEEEEcCCC
Confidence 1 345678999999999988888888887773 55 4676665544311 1 145677764
No 106
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=66.71 E-value=2.8e+02 Score=33.09 Aligned_cols=150 Identities=9% Similarity=0.120 Sum_probs=88.5
Q ss_pred ceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeec--
Q 000548 1077 WQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELK-- 1154 (1431)
Q Consensus 1077 ~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~-- 1154 (1431)
++....+.++.+.-+--+. |. .+.+.+++++- ..+.|.+|++.... .+++.+.....-
T Consensus 180 l~~~~~~~~~~G~GPRh~~---f~----pdg~~~Yv~~e---------~s~~v~v~~~~~~~----g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 180 LTPVDSIKVPPGSGPRHLA---FS----PDGKYAYVVNE---------LSNTVSVFDYDPSD----GSLTEIQTISTLPE 239 (345)
T ss_dssp EEEEEEEECSTTSSEEEEE---E-----TTSSEEEEEET---------TTTEEEEEEEETTT----TEEEEEEEEESCET
T ss_pred EEEeeccccccCCCCcEEE---Ec----CCcCEEEEecC---------CCCcEEEEeecccC----CceeEEEEeeeccc
Confidence 3444556677766665443 32 12334444432 47889999998422 235554443332
Q ss_pred ---C--ceEEEcc-ccC-eEEEEe--CCeEEEEEccC--CeeeeeEeecCCCeeEEEEE--EeCCEEEEEeccc-cEEEE
Q 000548 1155 ---G--AISALAS-LQG-HLLIAS--GPKIILHKWTG--TELNGIAFYDAPPLYVVSLN--IVKNFILLGDIHK-SIYFL 1220 (1431)
Q Consensus 1155 ---g--~V~al~~-~~g-~Ll~~v--g~~l~v~~~~~--~~L~~~a~~~~~~~~i~~l~--~~~~~IlvGD~~~-Sv~ll 1220 (1431)
+ ....|.- -+| +|.++. .+.|.+|+++. .+|..+....+-..+...+. ..+++++|+.... .|.++
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 2 2334432 235 555554 26899999953 45766665443122344444 4788999998664 79999
Q ss_pred EEeccccEEEEeeeccCCccEEEEEE
Q 000548 1221 SWKEQGAQLNLLAKDFGSLDCFATEF 1246 (1431)
Q Consensus 1221 ~~~~~~~~l~~~arD~~~~~vta~~f 1246 (1431)
+.+.+.++|..+++...--..+|+.|
T Consensus 320 ~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 320 DIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEeCCCCcEEEecccccCCCCEEEeC
Confidence 99988999999887655445555554
No 107
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=65.89 E-value=22 Score=35.97 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=38.5
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc
Q 000548 1088 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA 1161 (1431)
Q Consensus 1088 ~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~ 1161 (1431)
|..++|++.-.|+. ....+.|+|||. -.|+.|++.++.+ ++-+++...|.+|.
T Consensus 47 n~~italaaG~l~~---~~~~D~LliGt~----------t~llaYDV~~N~d--------~Fyke~~DGvn~i~ 99 (136)
T PF14781_consen 47 NQEITALAAGRLKP---DDGRDCLLIGTQ----------TSLLAYDVENNSD--------LFYKEVPDGVNAIV 99 (136)
T ss_pred CCceEEEEEEecCC---CCCcCEEEEecc----------ceEEEEEcccCch--------hhhhhCccceeEEE
Confidence 67889999999863 346789999995 4899999987532 34456666666665
No 108
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.69 E-value=99 Score=34.19 Aligned_cols=132 Identities=12% Similarity=0.115 Sum_probs=78.9
Q ss_pred cCeEEEEeC-CeEEEEEccCCeeeeeEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEec---cccEEEEeeeccCC
Q 000548 1164 QGHLLIASG-PKIILHKWTGTELNGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKE---QGAQLNLLAKDFGS 1238 (1431)
Q Consensus 1164 ~g~Ll~~vg-~~l~v~~~~~~~L~~~a~-~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~---~~~~l~~~arD~~~ 1238 (1431)
|.++..|-| ..+++|+....+..++-. +.. ++-.+.-.-.-..++-|-+-.|+.++..+. +|-++.--|+|
T Consensus 71 nskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--- 146 (307)
T KOG0316|consen 71 NSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--- 146 (307)
T ss_pred ccccccCCCCceEEEEEcccCeeeeecccccc-eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC---
Confidence 446666655 457789998765544322 333 333222222223555576667787776543 23333333444
Q ss_pred ccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCC
Q 000548 1239 LDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDK 1318 (1431)
Q Consensus 1239 ~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~ 1318 (1431)
.|.++. +.+.. |+++-.+|++.+|.. |.-....=++|+.||+..- .+
T Consensus 147 -~V~Si~--v~~he--IvaGS~DGtvRtydi-----------R~G~l~sDy~g~pit~vs~---s~-------------- 193 (307)
T KOG0316|consen 147 -GVSSID--VAEHE--IVAGSVDGTVRTYDI-----------RKGTLSSDYFGHPITSVSF---SK-------------- 193 (307)
T ss_pred -ceeEEE--ecccE--EEeeccCCcEEEEEe-----------ecceeehhhcCCcceeEEe---cC--------------
Confidence 466776 45556 899999999999964 2334556689999999763 22
Q ss_pred CCceEEEEEcCCCcE
Q 000548 1319 TNRFALLFGTLDGSI 1333 (1431)
Q Consensus 1319 ~~~~~il~~T~~GsI 1333 (1431)
+....+.++++++|
T Consensus 194 -d~nc~La~~l~stl 207 (307)
T KOG0316|consen 194 -DGNCSLASSLDSTL 207 (307)
T ss_pred -CCCEEEEeecccee
Confidence 13567777777765
No 109
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=64.00 E-value=76 Score=40.35 Aligned_cols=140 Identities=16% Similarity=0.149 Sum_probs=83.5
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEcccc-CeEEEEe-CCeEEEEEccCCe
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALASLQ-GHLLIAS-GPKIILHKWTGTE 1184 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~-~~~~g~V~al~~~~-g~Ll~~v-g~~l~v~~~~~~~ 1184 (1431)
..+++.|+ ..|.|.+|++.. .+.+++ .-..+.|+++..-. .+++-|. -..|++|++..++
T Consensus 341 ~~~lvsgs---------~d~~v~VW~~~~--------~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 341 EPLLVSGS---------YDGTVKVWDPRT--------GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred CCEEEEEe---------cCceEEEEEhhh--------ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh
Confidence 57999998 478999999973 333333 22788999985333 4565443 4569999998773
Q ss_pred eeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcE
Q 000548 1185 LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNI 1264 (1431)
Q Consensus 1185 L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl 1264 (1431)
..+..+......+.++...+++++-+-+-..|.+. +.+.+.......-.+.-.++++.+ . +.. ++++=.+|.+
T Consensus 404 -~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~W--D~~~~~~~~~~~~~~~~~v~~l~~-~-~~~--il~s~~~~~~ 476 (537)
T KOG0274|consen 404 -KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLW--DAEEGECLRTLEGRHVGGVSALAL-G-KEE--ILCSSDDGSV 476 (537)
T ss_pred -hhhhhhcCCcccccccccccceeEeccccccEEEe--ecccCceeeeeccCCcccEEEeec-C-cce--EEEEecCCee
Confidence 11222333134455555555555444444446554 444444444333334455667663 2 344 7888888998
Q ss_pred EEEeeCC
Q 000548 1265 QIFYYAP 1271 (1431)
Q Consensus 1265 ~vl~~~p 1271 (1431)
.++.+..
T Consensus 477 ~l~dl~~ 483 (537)
T KOG0274|consen 477 KLWDLRS 483 (537)
T ss_pred EEEeccc
Confidence 8886544
No 110
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=63.98 E-value=3.4e+02 Score=33.34 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=35.2
Q ss_pred CCCceEEEE-EecCeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEecCCCeEEEEEe
Q 000548 964 NCNHGFIYV-TSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAEKNLYPLIVS 1021 (1431)
Q Consensus 964 ~~~~g~i~~-~~~~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~~~~~~~~v~~s 1021 (1431)
||.+..|.- .-.|.+.|-.+-..+ +-..-+++-|...|.+-||+..+...+..+
T Consensus 130 N~~DeyiAsvs~gGdiiih~~~t~~----~tt~f~~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 130 NNTDEYIASVSDGGDIIIHGTKTKQ----KTTTFTIDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred cCCcceeEEeccCCcEEEEecccCc----cccceecCCCCeEEEeecccccceeeEeec
Confidence 344434433 335677777766544 345556777888899999998887776544
No 111
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=63.02 E-value=3e+02 Score=32.07 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=80.2
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEee-cCCCCCccEEEEE-EEeecCceEEEc--cc
Q 000548 1088 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR-NADNPQNLVTEVY-SKELKGAISALA--SL 1163 (1431)
Q Consensus 1088 ~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~-~~~~~~~~l~lv~-~~~~~g~V~al~--~~ 1163 (1431)
-+.+++..++.|. ...++|..|= +-.|.+|++.. ..+-+.. -.+.+ +.-.+|.+.+++ +.
T Consensus 155 ~de~taAhsL~Fs-----~DGeqlfaGy----------krcirvFdt~RpGr~c~vy-~t~~~~k~gq~giisc~a~sP~ 218 (406)
T KOG2919|consen 155 QDEYTAAHSLQFS-----PDGEQLFAGY----------KRCIRVFDTSRPGRDCPVY-TTVTKGKFGQKGIISCFAFSPM 218 (406)
T ss_pred HHhhhhheeEEec-----CCCCeEeecc----------cceEEEeeccCCCCCCcch-hhhhcccccccceeeeeeccCC
Confidence 3556666666774 2346777774 56899999964 1110100 11111 334456655554 44
Q ss_pred cCe-EE-EEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEeccc--cEEEEeee---
Q 000548 1164 QGH-LL-IASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQG--AQLNLLAK--- 1234 (1431)
Q Consensus 1164 ~g~-Ll-~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~~--~~l~~~ar--- 1234 (1431)
+.+ +. -+-|+.+=||.+++.+.+..-+ .. .--||.|.. .||++++| ++++=.++.|+--. .-+..+.|
T Consensus 219 ~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh-~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 219 DSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GH-GGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSRDPVYALERHVG 295 (406)
T ss_pred CCcceeeecccceeeeEecCCCCceeeec-cc-CCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhccchhhhhhhhcc
Confidence 553 33 3346889999998876433322 11 335666654 34444443 23333333333211 11122222
Q ss_pred ccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1235 DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1235 D~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
|.+.|=....+ .+++- +..+|.+|-+.+.+..
T Consensus 296 ~TNQRI~FDld--~~~~~--LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 296 DTNQRILFDLD--PKGEI--LASGDTDGSVRVWDLK 327 (406)
T ss_pred CccceEEEecC--CCCce--eeccCCCccEEEEecC
Confidence 33444333333 23333 5678899999998753
No 112
>PTZ00421 coronin; Provisional
Probab=62.19 E-value=1.1e+02 Score=38.56 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=68.6
Q ss_pred eecCceEEEcc--ccCeEEEEe--CCeEEEEEccCCeee-----eeEeecCCCeeEEEEEEe---CCEEEEEeccccEEE
Q 000548 1152 ELKGAISALAS--LQGHLLIAS--GPKIILHKWTGTELN-----GIAFYDAPPLYVVSLNIV---KNFILLGDIHKSIYF 1219 (1431)
Q Consensus 1152 ~~~g~V~al~~--~~g~Ll~~v--g~~l~v~~~~~~~L~-----~~a~~~~~~~~i~~l~~~---~~~IlvGD~~~Sv~l 1219 (1431)
...|+|++++- +++.+|++. ..+|++|++....+. +...+......|.++... +++++.|..-..|.+
T Consensus 73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI 152 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV 152 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence 35789998883 456544443 378999999654221 122232213345555543 357888877777777
Q ss_pred EEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1220 LSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1220 l~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+... ..+....- ..+...|+++.|-.+++. ++.+..+|.|.++..
T Consensus 153 WDl~--tg~~~~~l-~~h~~~V~sla~spdG~l--Latgs~Dg~IrIwD~ 197 (493)
T PTZ00421 153 WDVE--RGKAVEVI-KCHSDQITSLEWNLDGSL--LCTTSKDKKLNIIDP 197 (493)
T ss_pred EECC--CCeEEEEE-cCCCCceEEEEEECCCCE--EEEecCCCEEEEEEC
Confidence 6543 33322221 123456899998666665 778889999999864
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=61.73 E-value=14 Score=44.22 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=65.3
Q ss_pred CeEEEEeCC--eEEEEEccCCeeeeeEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEeccccEE-EEeeeccCCc
Q 000548 1165 GHLLIASGP--KIILHKWTGTELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQL-NLLAKDFGSL 1239 (1431)
Q Consensus 1165 g~Ll~~vg~--~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~~~~l-~~~arD~~~~ 1239 (1431)
.|+++|.-. .|.+|+|.++.... .+..+|-.+++|.. .|.|++.|.+-..++++... .+.| ..+ +.+-+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels--sG~LL~v~--~aHYQ 124 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS--SGILLNVL--SAHYQ 124 (476)
T ss_pred hheeeecccCccccccccCchhhhh--hhcccccceeeeecCCCceEEEeecccCcEEEEEec--cccHHHHH--Hhhcc
Confidence 367776543 57788888764222 22222555555554 57799999999999998765 3443 344 44445
Q ss_pred cEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1240 DCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1240 ~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
.+|+..|..|+.. |+.+-++|-++++..
T Consensus 125 ~ITcL~fs~dgs~--iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 125 SITCLKFSDDGSH--IITGSKDGAVLVWLL 152 (476)
T ss_pred ceeEEEEeCCCcE--EEecCCCccEEEEEE
Confidence 6999998545444 899999999999874
No 114
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=61.72 E-value=4.7e+02 Score=33.94 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=42.3
Q ss_pred eEEEEeCCCCEEEEEEEEcCeeeeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEe
Q 000548 376 VALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFT 438 (1431)
Q Consensus 376 ~~Ll~~~~G~l~~l~l~~dg~~V~~l~l~~~~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~ 438 (1431)
++|..||.|+...+++. +++.+.++--...-+|+..-.||-+|+-.....-+.++..
T Consensus 69 lllavdE~g~~~lvs~~------~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P 125 (893)
T KOG0291|consen 69 LLLAVDERGRALLVSLL------SRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAP 125 (893)
T ss_pred EEEEEcCCCcEEEEecc------cceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecC
Confidence 68899999999999885 2444555444445678888889999988877776666653
No 115
>PHA02713 hypothetical protein; Provisional
Probab=61.53 E-value=1.3e+02 Score=38.69 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=60.5
Q ss_pred eEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-Eecc---ccE-EEEEEeccc-cEEEEeeeccCCccEEEEEEE
Q 000548 1174 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIH---KSI-YFLSWKEQG-AQLNLLAKDFGSLDCFATEFL 1247 (1431)
Q Consensus 1174 ~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~---~Sv-~ll~~~~~~-~~l~~~arD~~~~~vta~~fl 1247 (1431)
.+..|+...++...++-+.. +-.-.++.+.++.|+| |... ... .+.+|+++. ++-..++.=+.+|....+. .
T Consensus 433 ~ve~YDP~td~W~~v~~m~~-~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~ 510 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWT-GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-L 510 (557)
T ss_pred eEEEECCCCCeEeecCCCCc-ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-E
Confidence 46778888777766665443 3333456677887765 5432 112 356899987 7888888766777766665 3
Q ss_pred ecCCeeEEEEEeCCCcEEEEeeCCCC
Q 000548 1248 IDGSTLSLVVSDEQKNIQIFYYAPKM 1273 (1431)
Q Consensus 1248 ~d~~~l~~i~~D~~gNl~vl~~~p~~ 1273 (1431)
++ +.|+++++. +|.-.+-.|||..
T Consensus 511 ~~-~~iyv~Gg~-~~~~~~e~yd~~~ 534 (557)
T PHA02713 511 HD-NTIMMLHCY-ESYMLQDTFNVYT 534 (557)
T ss_pred EC-CEEEEEeee-cceeehhhcCccc
Confidence 44 578777664 3444555677764
No 116
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=60.70 E-value=3.5e+02 Score=32.10 Aligned_cols=146 Identities=21% Similarity=0.193 Sum_probs=83.7
Q ss_pred EEEEEEeecCceEEEccccCeEEEEeCCeEEEEEccCCeeee-eEee-cC-CCeeEEEEEEeCCEEEEEeccccEEEEEE
Q 000548 1146 TEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNG-IAFY-DA-PPLYVVSLNIVKNFILLGDIHKSIYFLSW 1222 (1431)
Q Consensus 1146 ~lv~~~~~~g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~-~a~~-~~-~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~ 1222 (1431)
..+++.-..-+|.++.--+.||+++.-.+||||++.+=+|+- .-.. .. ......+.+..+.++..=|-..+=.++-|
T Consensus 79 ~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred ceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 345666778889998877789999999999999998654432 2222 12 02344444445567777666665555556
Q ss_pred eccccE-EEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEe
Q 000548 1223 KEQGAQ-LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQ 1301 (1431)
Q Consensus 1223 ~~~~~~-l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~ 1301 (1431)
+...-+ ...+. .+.-.+-|++|--|+..| --++|+---|+||.. |+ |+|+ -+|.=|-...++...+
T Consensus 159 d~~nl~~v~~I~--aH~~~lAalafs~~G~ll-ATASeKGTVIRVf~v-~~------G~kl---~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 159 DTINLQPVNTIN--AHKGPLAALAFSPDGTLL-ATASEKGTVIRVFSV-PE------GQKL---YEFRRGTYPVSIYSLS 225 (391)
T ss_pred EcccceeeeEEE--ecCCceeEEEECCCCCEE-EEeccCceEEEEEEc-CC------ccEe---eeeeCCceeeEEEEEE
Confidence 543211 11111 344456677764454432 123455555677764 22 4443 4566666666666555
Q ss_pred eec
Q 000548 1302 MLA 1304 (1431)
Q Consensus 1302 ~~~ 1304 (1431)
+.+
T Consensus 226 Fs~ 228 (391)
T KOG2110|consen 226 FSP 228 (391)
T ss_pred ECC
Confidence 443
No 117
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=59.78 E-value=3.1e+02 Score=31.23 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=36.3
Q ss_pred ceEEEEEecCeEEEEEcCCCCccCCC-cceEEeeCCCcccEEEEecCCCeEEEEE
Q 000548 967 HGFIYVTSQGILKICQLPSGSTYDNY-WPVQKIPLKATPHQITYFAEKNLYPLIV 1020 (1431)
Q Consensus 967 ~g~i~~~~~~~L~I~~l~~~~~~d~~-~~ir~i~L~~tprki~y~~~~~~~~v~~ 1020 (1431)
.-.+++..+..+.|.++.... ... -..+.+.+..+|+.|++. .+.+++++
T Consensus 105 ~~~L~va~kk~i~i~~~~~~~--~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 105 SRRLCVAVKKKILIYEWNDPR--NSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ceEEEEEECCEEEEEEEECCc--ccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 345666667799999988632 112 488999999999999999 35666654
No 118
>PHA03098 kelch-like protein; Provisional
Probab=59.48 E-value=82 Score=40.18 Aligned_cols=111 Identities=12% Similarity=0.008 Sum_probs=61.0
Q ss_pred EccccCeEEEEeC-------CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-Eeccc----cEEEEEEecccc
Q 000548 1160 LASLQGHLLIASG-------PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHK----SIYFLSWKEQGA 1227 (1431)
Q Consensus 1160 l~~~~g~Ll~~vg-------~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~----Sv~ll~~~~~~~ 1227 (1431)
++.++|+|.+.-| +.+..|+...++....+-... |-+-.+..+.++.|+| |=..+ .=.+..|++..+
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF-PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCc-CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 3445666654434 246677777666555443333 3333445556776665 33211 123567888777
Q ss_pred EEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCc-----EEEEeeCCCC
Q 000548 1228 QLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKN-----IQIFYYAPKM 1273 (1431)
Q Consensus 1228 ~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gN-----l~vl~~~p~~ 1273 (1431)
+-..++.-+.++.-.++. ..++.++++++....+ -.++.|+|..
T Consensus 417 ~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 417 KWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred eeeecCCCCccccCceEE--EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 777776655566544444 3456787777643211 1255667753
No 119
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=59.35 E-value=2.2e+02 Score=33.79 Aligned_cols=109 Identities=16% Similarity=0.057 Sum_probs=70.1
Q ss_pred cCceEEEccccC---eEEEEeC-CeEEEEEccCCe-eeeeEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEeccc
Q 000548 1154 KGAISALASLQG---HLLIASG-PKIILHKWTGTE-LNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQG 1226 (1431)
Q Consensus 1154 ~g~V~al~~~~g---~Ll~~vg-~~l~v~~~~~~~-L~~~a~~~~~~~~i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~~ 1226 (1431)
.++|.|+. |.. +|+.|.| +++++|++.... +-.+--++. +|.++.. .+..|+-|-.-.+|-+. ++..
T Consensus 115 ~e~Vl~~~-fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~---WVlcvawsPDgk~iASG~~dg~I~lw--dpkt 188 (480)
T KOG0271|consen 115 GEAVLSVQ-FSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN---WVLCVAWSPDGKKIASGSKDGSIRLW--DPKT 188 (480)
T ss_pred CCcEEEEE-ecCCCceEEecCCCceEEeeccCCCCcceeecCCcc---EEEEEEECCCcchhhccccCCeEEEe--cCCC
Confidence 45777765 433 7888888 688999998654 222222333 5666554 56688888888888774 6554
Q ss_pred cEEEEeeeccCCccEEEEEEE----ecCCeeEEEEEeCCCcEEEEee
Q 000548 1227 AQLNLLAKDFGSLDCFATEFL----IDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1227 ~~l~~~arD~~~~~vta~~fl----~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
++.+--+=--+..|+++..|- .-+..+ +..+-++|++++...
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~-las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRR-LASSSKDGSVRIWDT 234 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccc-eecccCCCCEEEEEc
Confidence 443322223467899998873 222332 677888999999864
No 120
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=58.19 E-value=2.8e+02 Score=30.16 Aligned_cols=136 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred eEEEEEeeeecC-CCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--ccCeEEEEeC---CeEEEEEccC
Q 000548 1109 TLLAIGTAYVQG-EDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--LQGHLLIASG---PKIILHKWTG 1182 (1431)
Q Consensus 1109 ~~ivVGT~~~~~-e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~--~~g~Ll~~vg---~~l~v~~~~~ 1182 (1431)
.||+|=|....+ .....-|..-+|.+.... .+ .+ ..+.+-+|+|.+++- -+.++++..| .++.+|+...
T Consensus 18 ~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~---~~-~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~ 92 (194)
T PF08662_consen 18 DYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IP---VE-SIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG 92 (194)
T ss_pred CEEEEEEEEeeccCcceEEeeEEEEEEecCC-Cc---cc-eeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc
Confidence 455555542211 123334667778775421 11 22 222344678999873 3446766655 4799999974
Q ss_pred CeeeeeEeecCCCeeEEEEEEeCCEEEEEeccc---cEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEe
Q 000548 1183 TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHK---SIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD 1259 (1431)
Q Consensus 1183 ~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~---Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D 1259 (1431)
+.+.. +-.. +.-.+.-+..|+++++|..-. .|.| |+... ...++...++ .++.+++-.|+.. ++.+.
T Consensus 93 ~~i~~--~~~~-~~n~i~wsP~G~~l~~~g~~n~~G~l~~--wd~~~--~~~i~~~~~~-~~t~~~WsPdGr~--~~ta~ 162 (194)
T PF08662_consen 93 KKIFS--FGTQ-PRNTISWSPDGRFLVLAGFGNLNGDLEF--WDVRK--KKKISTFEHS-DATDVEWSPDGRY--LATAT 162 (194)
T ss_pred cEeEe--ecCC-CceEEEECCCCCEEEEEEccCCCcEEEE--EECCC--CEEeeccccC-cEEEEEEcCCCCE--EEEEE
Confidence 43322 2222 333334456789999987542 2555 44433 3334443333 4788888667766 45544
No 121
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=56.53 E-value=1.9e+02 Score=36.18 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.1
Q ss_pred cEEEEEEecCCeEEEEECCCCceeEEe
Q 000548 751 DIYSVVCYESGALEIFDVPNFNCVFTV 777 (1431)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLp~~~~v~~~ 777 (1431)
..|++-+.+||+|+||-+-...|+..+
T Consensus 412 G~wlasGsdDGtvriWEi~TgRcvr~~ 438 (733)
T KOG0650|consen 412 GEWLASGSDDGTVRIWEIATGRCVRTV 438 (733)
T ss_pred cceeeecCCCCcEEEEEeecceEEEEE
Confidence 349999999999999999999988876
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=56.31 E-value=1.2e+02 Score=38.54 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=92.1
Q ss_pred CceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--ccCe
Q 000548 1089 ENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--LQGH 1166 (1431)
Q Consensus 1089 E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~--~~g~ 1166 (1431)
|+-.++..|+|.. .+.+..+|--|.. +.+.|++....+.+. .+---+.+--++-.|.|.. --++
T Consensus 545 ~HSssITsvKFa~--~gln~~MiscGAD-----------ksimFr~~qk~~~g~-~f~r~t~t~~ktTlYDm~Vdp~~k~ 610 (1080)
T KOG1408|consen 545 GHSSSITSVKFAC--NGLNRKMISCGAD-----------KSIMFRVNQKASSGR-LFPRHTQTLSKTTLYDMAVDPTSKL 610 (1080)
T ss_pred ccccceeEEEEee--cCCceEEEeccCc-----------hhhheehhccccCce-eccccccccccceEEEeeeCCCcce
Confidence 4556677777753 1224455555543 334455543211110 0111111222344454442 2233
Q ss_pred E-EEEeCCeEEEEEccCCeeee--eEe-ec-CCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccC-Ccc
Q 000548 1167 L-LIASGPKIILHKWTGTELNG--IAF-YD-APPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFG-SLD 1240 (1431)
Q Consensus 1167 L-l~~vg~~l~v~~~~~~~L~~--~a~-~~-~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~-~~~ 1240 (1431)
+ .+|...+|+||+....++.+ +.. -+ . -..=+.+..-+.||+..-.-|-+.++.|-.. +.+|+-+. .--
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG-~lIKv~lDPSgiY~atScsdktl~~~Df~sg----EcvA~m~GHsE~ 685 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG-DLIKVILDPSGIYLATSCSDKTLCFVDFVSG----ECVAQMTGHSEA 685 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccCCC-ceEEEEECCCccEEEEeecCCceEEEEeccc----hhhhhhcCcchh
Confidence 3 35666799999998654433 222 22 2 2222355566888888888899999888532 24565553 445
Q ss_pred EEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1241 CFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1241 vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
||.+.|+-|-.. +|..-.+|.||+.+++
T Consensus 686 VTG~kF~nDCkH--lISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 686 VTGVKFLNDCKH--LISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeeeeecccchh--heeecCCceEEEEECc
Confidence 899999777677 7888999999999864
No 123
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=56.23 E-value=2.5e+02 Score=35.00 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=42.7
Q ss_pred cEEEEEEecCCeEEEEECCCCceeEEecccccccccccccccccccccccccccCCCccCCCCCcccccccccEEEEEee
Q 000548 751 DIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQ 830 (1431)
Q Consensus 751 ~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~l~~~~~~~~~~~~~~~~~~~~i~~i~~~ 830 (1431)
+.++++++.+|.|+.|.--+.+.+-.++ ... +..+.+. . ...+.|..+.+.
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~---~~~--------------~v~s~pg---------~---~~~~svTal~F~ 237 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLD---AAS--------------SVNSHPG---------G---DAAPSVTALKFR 237 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeee---ccc--------------ccCCCcc---------c---cccCcceEEEec
Confidence 3488889999999999866655544332 100 0000000 0 112334444332
Q ss_pred eccCCCCccEEEEEeeCCeEEEEEe
Q 000548 831 RWSAHHSRPFLFAILTDGTILCYQA 855 (1431)
Q Consensus 831 ~~g~~~~~~~L~vgl~~G~l~~y~~ 855 (1431)
.+..++-||+.+|.+++|.+
T Consensus 238 -----d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 238 -----DDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred -----CCceeEEeeccCCcEEEEEc
Confidence 34788999999999999997
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=56.05 E-value=1.5e+02 Score=33.95 Aligned_cols=201 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCCCccccccccccceEEEEEeccCCCCCCceeee
Q 000548 1002 ATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRA 1081 (1431)
Q Consensus 1002 ~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~v~lid~~~~~~~~~~~~ 1081 (1431)
+..|.|-+||....++|.+..+ .+||+|- .+++..-
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp----------------------------------------~~rlYdv----~T~Qcfv 252 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHP----------------------------------------TLRLYDV----NTYQCFV 252 (430)
T ss_pred ceeeeEeecCCCceEEEecCCC----------------------------------------ceeEEec----cceeEee
Q ss_pred eEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc
Q 000548 1082 TIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA 1161 (1431)
Q Consensus 1082 ~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~ 1161 (1431)
+-. ++..+--++..|... .....+|-|. ..|.|.+|+=.. .+...-......|+-.|-.
T Consensus 253 san-Pd~qht~ai~~V~Ys-----~t~~lYvTaS---------kDG~IklwDGVS------~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 253 SAN-PDDQHTGAITQVRYS-----STGSLYVTAS---------KDGAIKLWDGVS------NRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred ecC-cccccccceeEEEec-----CCccEEEEec---------cCCcEEeecccc------HHHHHHHHhhcCCceeeeE
Q ss_pred cc--cCeEEEEeC--CeEEEEEccCCeeeeeEeecCCCeeEEEEEEe------CCEEEEEeccccEEEEEEec---cccE
Q 000548 1162 SL--QGHLLIASG--PKIILHKWTGTELNGIAFYDAPPLYVVSLNIV------KNFILLGDIHKSIYFLSWKE---QGAQ 1228 (1431)
Q Consensus 1162 ~~--~g~Ll~~vg--~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~------~~~IlvGD~~~Sv~ll~~~~---~~~~ 1228 (1431)
.| ||+.+.+.| +.+.+|++...+.+..-.-.. .+--....+. .+|++.=| -+|.++..|+. +...
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg-~tgrq~~rtqAvFNhtEdyVl~pD-Eas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG-TTGRQKHRTQAVFNHTEDYVLFPD-EASNSLCSWDARTADRVA 389 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCCceEEEEecCC-cccchhhhhhhhhcCccceEEccc-cccCceeeccccchhhhh
Q ss_pred EEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCC
Q 000548 1229 LNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKM 1273 (1431)
Q Consensus 1229 l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~ 1273 (1431)
|..++....+||++..- ..--- +-++|.+.-=|-++....+
T Consensus 390 l~slgHn~a~R~i~HSP--~~p~F--mTcsdD~raRFWyrr~atn 430 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSP--VEPAF--MTCSDDFRARFWYRRVATN 430 (430)
T ss_pred hcccCCCCCceEEEeCC--CCCce--eeecccceeeeeeecccCC
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=55.59 E-value=92 Score=39.06 Aligned_cols=72 Identities=26% Similarity=0.230 Sum_probs=46.3
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC--eEEEEeC-CeEEEEEccCC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG--HLLIASG-PKIILHKWTGT 1183 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g--~Ll~~vg-~~l~v~~~~~~ 1183 (1431)
.+..|+|+- ..|.|.+|+...-...++. -++..-.-..++|..+....| +||-+.| +++++|++...
T Consensus 63 ~eHiLavad---------E~G~i~l~dt~~~~fr~ee-~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 63 KEHILAVAD---------EDGGIILFDTKSIVFRLEE-RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccceEEEec---------CCCceeeecchhhhcchhh-hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 456666664 3688888888652211110 112222334688888887766 5776666 79999999988
Q ss_pred eeeee
Q 000548 1184 ELNGI 1188 (1431)
Q Consensus 1184 ~L~~~ 1188 (1431)
+|.++
T Consensus 133 ~l~G~ 137 (720)
T KOG0321|consen 133 RLVGG 137 (720)
T ss_pred eeecc
Confidence 88776
No 126
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=55.46 E-value=3.4e+02 Score=30.30 Aligned_cols=133 Identities=6% Similarity=0.006 Sum_probs=67.1
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC---eEEEEeCCeEEEEEccCCeeeee--EeecCCCeeEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG---HLLIASGPKIILHKWTGTELNGI--AFYDAPPLYVV 1199 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g---~Ll~~vg~~l~v~~~~~~~L~~~--a~~~~~~~~i~ 1199 (1431)
..|++.+|++... .+.+.-+..||++++--++ -|+-+.++.|++.+-+..+|++. ....+ ..-+-
T Consensus 163 ~DGtvRtydiR~G---------~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-eykld 232 (307)
T KOG0316|consen 163 VDGTVRTYDIRKG---------TLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-EYKLD 232 (307)
T ss_pred cCCcEEEEEeecc---------eeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-eeeee
Confidence 4899999999752 1344556789999885433 45666789999888776665541 11111 11000
Q ss_pred EEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1200 SLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1200 ~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
+--...+.++++-.-++..++ |+-.+.+++.--+-.....++.+.+...... |+.+-..+-++.++++
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~-wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~--f~~A~~~~~~~~~~~~ 300 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYF-WDLVDETQISKLSVVSTVIVTDLSCHPTMDD--FITATGHGDLFWYQEN 300 (307)
T ss_pred eeecccceeEEeccCCceEEE-EEeccceeeeeeccCCceeEEeeecccCccc--eeEecCCceeceeehh
Confidence 111122344444444443222 3322222221111222233555555444445 5566666666666544
No 127
>PLN02153 epithiospecifier protein
Probab=54.70 E-value=3.3e+02 Score=32.32 Aligned_cols=90 Identities=9% Similarity=-0.010 Sum_probs=49.9
Q ss_pred CeEEEEEccCCeeeeeEeec-C-CCeeEEEEEEeCCEEEE-Eecc------------ccEEEEEEeccccEEEEeeec--
Q 000548 1173 PKIILHKWTGTELNGIAFYD-A-PPLYVVSLNIVKNFILL-GDIH------------KSIYFLSWKEQGAQLNLLAKD-- 1235 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~-~-~~~~i~~l~~~~~~Ilv-GD~~------------~Sv~ll~~~~~~~~l~~~arD-- 1235 (1431)
+.+.+|++...+...+.... . .+-...+..+.+++|+| |-.. .+-.++.|+.+.++-..+...
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~ 296 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGE 296 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCC
Confidence 45788888877666554321 1 03344556667776654 4421 012577888887777776642
Q ss_pred -cCCc-cE-EEEEEEecCCeeEEEEEeCCC
Q 000548 1236 -FGSL-DC-FATEFLIDGSTLSLVVSDEQK 1262 (1431)
Q Consensus 1236 -~~~~-~v-ta~~fl~d~~~l~~i~~D~~g 1262 (1431)
..|+ |. .++.....++.+++.++...+
T Consensus 297 ~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~ 326 (341)
T PLN02153 297 PAMPRGWTAYTTATVYGKNGLLMHGGKLPT 326 (341)
T ss_pred CCCCCccccccccccCCcceEEEEcCcCCC
Confidence 2233 32 233322344567677777554
No 128
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=54.01 E-value=50 Score=37.61 Aligned_cols=162 Identities=10% Similarity=0.060 Sum_probs=92.3
Q ss_pred eEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE---EeecCceE
Q 000548 1082 TIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS---KELKGAIS 1158 (1431)
Q Consensus 1082 ~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~---~~~~g~V~ 1158 (1431)
++.|.+--++.|. .|. ....|++-|. ..|.|-+|.+....-+ ..||.... ...+.+|.
T Consensus 207 ~IKFg~KSh~EcA---~FS-----PDgqyLvsgS---------vDGFiEVWny~~GKlr--KDLkYQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 207 SIKFGQKSHVECA---RFS-----PDGQYLVSGS---------VDGFIEVWNYTTGKLR--KDLKYQAQDNFMMMDDAVL 267 (508)
T ss_pred heecccccchhhe---eeC-----CCCceEeecc---------ccceeeeehhccchhh--hhhhhhhhcceeecccceE
Confidence 4566666677666 353 3457999887 5899999999753211 11443332 33578999
Q ss_pred EEccccC--eEEEE-eCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEe--CCEEEEEeccccEEEEEEeccccEEEEee
Q 000548 1159 ALASLQG--HLLIA-SGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIV--KNFILLGDIHKSIYFLSWKEQGAQLNLLA 1233 (1431)
Q Consensus 1159 al~~~~g--~Ll~~-vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~--~~~IlvGD~~~Sv~ll~~~~~~~~l~~~a 1233 (1431)
||+--++ +|..| +..||.+|++...+.++.-.... .--|+++... +..|+-+-.-+-+-+-..+. +++..--
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAH-tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS--GK~LKEf 344 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAH-TKGVTCLSFSRDNSQILSASFDQTVRIHGLKS--GKCLKEF 344 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhh-ccCeeEEEEccCcchhhcccccceEEEecccc--chhHHHh
Confidence 9995555 34332 34699999998765433211111 1234444433 23444444333333333321 1111101
Q ss_pred eccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1234 KDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1234 rD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
| -+...|..+.|--|++. +|.+..+|.+.+..
T Consensus 345 r-GHsSyvn~a~ft~dG~~--iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 345 R-GHSSYVNEATFTDDGHH--IISASSDGTVKVWH 376 (508)
T ss_pred c-CccccccceEEcCCCCe--EEEecCCccEEEec
Confidence 1 13456888888667777 89999999998875
No 129
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=53.99 E-value=1.9e+02 Score=33.81 Aligned_cols=147 Identities=22% Similarity=0.282 Sum_probs=84.2
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--------ccCeEEEEeCCeEEEEE
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--------LQGHLLIASGPKIILHK 1179 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~--------~~g~Ll~~vg~~l~v~~ 1179 (1431)
...++||. +.|.+.+|+.... ..| .+++|+...+.. ..+-+.++.-..|++|+
T Consensus 40 e~~vav~l---------Sngsv~lyd~~tg-----~~l-----~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 40 ETAVAVSL---------SNGSVRLYDKGTG-----QLL-----EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred ceeEEEEe---------cCCeEEEEeccch-----hhh-----heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 35677777 4788889887641 112 223444333332 22334456667899999
Q ss_pred ccCC-eeeeeEeecCC--CeeEEEEEEeCCEEEEEecc----ccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCe
Q 000548 1180 WTGT-ELNGIAFYDAP--PLYVVSLNIVKNFILLGDIH----KSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGST 1252 (1431)
Q Consensus 1180 ~~~~-~L~~~a~~~~~--~~~i~~l~~~~~~IlvGD~~----~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~ 1252 (1431)
+... +.-+..+...- |.....+.+.++.|..|.-. -+|.|+-++.. .++.-.--|.+.-.||++.|...+..
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~-qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE-QQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc-cchhhhhhhhccCcceeEEecCCCCC
Confidence 9643 23333333320 22222344467788887543 34444444432 33322233555667999999887777
Q ss_pred eEEEEEeCCCcEEEEeeCCCCCC
Q 000548 1253 LSLVVSDEQKNIQIFYYAPKMSE 1275 (1431)
Q Consensus 1253 l~~i~~D~~gNl~vl~~~p~~~~ 1275 (1431)
| ++.+-.+|=+-+|....++.+
T Consensus 180 l-LlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 180 L-LLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred e-EEeecccceEEeeecCCCcch
Confidence 6 788888998888876555433
No 130
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=53.63 E-value=3.4e+02 Score=29.83 Aligned_cols=171 Identities=9% Similarity=0.064 Sum_probs=88.6
Q ss_pred EEEEEeccCCCCCCceeeeeEECCC-CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCC
Q 000548 1063 YEVRILEPDRAGGPWQTRATIPMQS-SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNP 1141 (1431)
Q Consensus 1063 ~~v~lid~~~~~~~~~~~~~~~l~~-~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~ 1141 (1431)
+.|..+|+.++ +.+-++.+.+ .....+..+. ...++++++ ..|.|+.|+...
T Consensus 3 g~l~~~d~~tG----~~~W~~~~~~~~~~~~~~~~~---------~~~~v~~~~---------~~~~l~~~d~~t----- 55 (238)
T PF13360_consen 3 GTLSALDPRTG----KELWSYDLGPGIGGPVATAVP---------DGGRVYVAS---------GDGNLYALDAKT----- 55 (238)
T ss_dssp SEEEEEETTTT----EEEEEEECSSSCSSEEETEEE---------ETTEEEEEE---------TTSEEEEEETTT-----
T ss_pred CEEEEEECCCC----CEEEEEECCCCCCCccceEEE---------eCCEEEEEc---------CCCEEEEEECCC-----
Confidence 35678887544 5666667754 2222211111 124666665 478888888753
Q ss_pred CccEEEEEEEeecCceEEE-ccccCeEEEEe-CCeEEEEEccCCeeeeeE-eec--CCC-eeEEEEEEeCCEEEEEeccc
Q 000548 1142 QNLVTEVYSKELKGAISAL-ASLQGHLLIAS-GPKIILHKWTGTELNGIA-FYD--APP-LYVVSLNIVKNFILLGDIHK 1215 (1431)
Q Consensus 1142 ~~~l~lv~~~~~~g~V~al-~~~~g~Ll~~v-g~~l~v~~~~~~~L~~~a-~~~--~~~-~~i~~l~~~~~~IlvGD~~~ 1215 (1431)
-+++.+.+..+++... ...+++++++. ++.|+.++....+++-.. ... ..+ .......+.+++++++..-.
T Consensus 56 ---G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 56 ---GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp ---SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred ---CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 2445555554443222 34567777665 456777776655544332 211 101 11223444589999998844
Q ss_pred cEEEEEEeccccEEEEeeeccCCcc---E-----EEEEEEecCCeeEEEEEeCCCcEEEE
Q 000548 1216 SIYFLSWKEQGAQLNLLAKDFGSLD---C-----FATEFLIDGSTLSLVVSDEQKNIQIF 1267 (1431)
Q Consensus 1216 Sv~ll~~~~~~~~l~~~arD~~~~~---v-----ta~~fl~d~~~l~~i~~D~~gNl~vl 1267 (1431)
. ++.++.+.+++.--..-..+.. + .....+++++. +.++..+|.++.+
T Consensus 133 ~--l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~g~~~~~ 188 (238)
T PF13360_consen 133 K--LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGR--VYVSSGDGRVVAV 188 (238)
T ss_dssp E--EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTE--EEEECCTSSEEEE
T ss_pred c--EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCE--EEEEcCCCeEEEE
Confidence 4 4556766666633222122111 1 12333455556 6677877875444
No 131
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=52.15 E-value=66 Score=36.66 Aligned_cols=212 Identities=15% Similarity=0.207 Sum_probs=120.4
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc--cCeEEEE-eCCeEEEEEccCC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL--QGHLLIA-SGPKIILHKWTGT 1183 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~--~g~Ll~~-vg~~l~v~~~~~~ 1183 (1431)
..++++-|. -.|.|.+|+|... ..-+++..-| .-.|+|+.-- +..++.+ ..+.++++.+...
T Consensus 274 DsEMlAsGs---------qDGkIKvWri~tG--~ClRrFdrAH----tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 274 DSEMLASGS---------QDGKIKVWRIETG--QCLRRFDRAH----TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred cHHHhhccC---------cCCcEEEEEEecc--hHHHHhhhhh----ccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 456777765 4799999999752 1112333333 3456776632 3466644 4588999999876
Q ss_pred eeeeeEeecCCCeeEEEEEE--eCCEEEEEeccccEEEEEEecc--ccEEEEeeeccCCccEEEEEEEecCCeeEEEEEe
Q 000548 1184 ELNGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQ--GAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSD 1259 (1431)
Q Consensus 1184 ~L~~~a~~~~~~~~i~~l~~--~~~~IlvGD~~~Sv~ll~~~~~--~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D 1259 (1431)
++++. |... .+||..... .|+.|+-+-.--+|-++.-+.. -..+-..+.|+. |.++- ++-.+.=.|+++.
T Consensus 339 K~LKE-frGH-sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~---vnsv~-~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 339 KCLKE-FRGH-SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP---VNSVI-LLPKNPEHFIVCN 412 (508)
T ss_pred hhHHH-hcCc-cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc---ceeEE-EcCCCCceEEEEc
Confidence 65432 3333 556665443 4678887766666666544322 134444554433 44444 3444444489999
Q ss_pred CCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEeC
Q 000548 1260 EQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPL 1339 (1431)
Q Consensus 1260 ~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl 1339 (1431)
+...++++....+...+. ..+.=.-|+.|++... |. | .-|.+.+.+|-++++.-+
T Consensus 413 rsntv~imn~qGQvVrsf------sSGkREgGdFi~~~lS----pk---------G------ewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSF------SSGKREGGDFINAILS----PK---------G------EWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CCCeEEEEeccceEEeee------ccCCccCCceEEEEec----CC---------C------cEEEEEccCcEEEEEEee
Confidence 999999987543322111 1122334777777652 22 2 346666777777777666
Q ss_pred ChHhHHHHHHHHHHHHhcCCCCCCCCcccccc
Q 000548 1340 DELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQ 1371 (1431)
Q Consensus 1340 ~e~~~~~L~~Lq~~l~~~~~~~~Gl~~~~~R~ 1371 (1431)
+-+ ||+.|.-+.+-+-|+.|--.|.
T Consensus 468 sG~-------LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 468 SGK-------LERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred cCc-------eeeeeecccccccccccCcccc
Confidence 431 2333333444567777766654
No 132
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=51.88 E-value=57 Score=35.82 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=41.1
Q ss_pred EEeecCceEEE--ccccCeEEEEeCCeEEEEEccCCee--eeeEeecC--------CCeeEEEEEEeCCEEEEEec
Q 000548 1150 SKELKGAISAL--ASLQGHLLIASGPKIILHKWTGTEL--NGIAFYDA--------PPLYVVSLNIVKNFILLGDI 1213 (1431)
Q Consensus 1150 ~~~~~g~V~al--~~~~g~Ll~~vg~~l~v~~~~~~~L--~~~a~~~~--------~~~~i~~l~~~~~~IlvGD~ 1213 (1431)
+.+.+-++.++ |+..|.|++|.++++.+|.+..+.. .+..++|. .....+.+...+++|.+-+-
T Consensus 130 ElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~ 205 (215)
T PF14761_consen 130 ELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAICEGYIAVMSD 205 (215)
T ss_pred EecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEEEEeeEEEEecC
Confidence 34455555554 5778999999999999999974432 12222221 13446677778888877443
No 133
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.58 E-value=1.1e+02 Score=39.89 Aligned_cols=131 Identities=11% Similarity=0.190 Sum_probs=85.9
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEcccc-CeEEEEeC--CeEEEEEcc
Q 000548 1106 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALASLQ-GHLLIASG--PKIILHKWT 1181 (1431)
Q Consensus 1106 ~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~-~~~~g~V~al~~~~-g~Ll~~vg--~~l~v~~~~ 1181 (1431)
..++.|+++- -+|.|.+|++.= -.++++ .+.+|||..++-.. +-|.++-| .+|.||.+.
T Consensus 19 P~rPwILtsl---------HsG~IQlWDYRM--------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 19 PKRPWILTSL---------HSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred CCCCEEEEee---------cCceeeeehhhh--------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 4678888776 489999999842 234444 45799999998443 45666666 589999998
Q ss_pred CCee----------ee-eEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecC
Q 000548 1182 GTEL----------NG-IAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG 1250 (1431)
Q Consensus 1182 ~~~L----------~~-~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~ 1250 (1431)
.+++ +| +.|+.. -.+|.|.+ =-+-|-+..|+ .++.+-+..- +...|+|+.|...+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhe-yPWIlSAS----------DDQTIrIWNwq--sr~~iavltG-HnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHE-YPWILSAS----------DDQTIRIWNWQ--SRKCIAVLTG-HNHYVMCAQFHPTE 147 (1202)
T ss_pred cceehhhhccccceeEEeeccCC-CceEEEcc----------CCCeEEEEecc--CCceEEEEec-CceEEEeeccCCcc
Confidence 7642 12 334444 23443322 22345566665 4555555544 44579999998877
Q ss_pred CeeEEEEEeCCCcEEEEee
Q 000548 1251 STLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1251 ~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+. |+.+--+..++|...
T Consensus 148 Dl--IVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 148 DL--IVSASLDQTVRVWDI 164 (1202)
T ss_pred ce--EEEecccceEEEEee
Confidence 76 777878899998764
No 134
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.57 E-value=51 Score=41.77 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=74.7
Q ss_pred EEEccccCeEEEEeC-CeEEEEEccCCeeee-eEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecc-ccEEEEeee
Q 000548 1158 SALASLQGHLLIASG-PKIILHKWTGTELNG-IAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQ-GAQLNLLAK 1234 (1431)
Q Consensus 1158 ~al~~~~g~Ll~~vg-~~l~v~~~~~~~L~~-~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~-~~~l~~~ar 1234 (1431)
+|+..-..+|.+|+. ..||+|.=..++++. +.....-.+.+.+++....++++|...-=|.+++.+.. +..+..+..
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 445555567776665 467788877665443 33233214555567777778888888777777776543 445555544
Q ss_pred cc--CCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCC
Q 000548 1235 DF--GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1235 D~--~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p 1271 (1431)
-. +++.|||+++--|+.+ +..+|..|-+..-+++.
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k--~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMK--LYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccE--EeecCCCceEEEEEech
Confidence 33 4889999997555556 78999999999887765
No 135
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=51.54 E-value=4.2e+02 Score=33.79 Aligned_cols=134 Identities=10% Similarity=0.112 Sum_probs=85.1
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEe-ecCceEEEccccCeEEEEe-CCeEEEEEccCCee
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKE-LKGAISALASLQGHLLIAS-GPKIILHKWTGTEL 1185 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~-~~g~V~al~~~~g~Ll~~v-g~~l~v~~~~~~~L 1185 (1431)
..+++-|. ....+.+|++... +-.|... ..+.|.+|.....+++-|. -+.|.+|++...+.
T Consensus 261 ~~~lvsgS---------~D~t~rvWd~~sg--------~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~ 323 (537)
T KOG0274|consen 261 GDKLVSGS---------TDKTERVWDCSTG--------ECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGAC 323 (537)
T ss_pred CCEEEEEe---------cCCcEEeEecCCC--------cEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcce
Confidence 46777776 3667888886541 1122222 5678888887766666543 47899999997654
Q ss_pred eeeEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEE-EEeeeccCCccEEEEEEEecC-CeeEEEEEeCCC
Q 000548 1186 NGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQL-NLLAKDFGSLDCFATEFLIDG-STLSLVVSDEQK 1262 (1431)
Q Consensus 1186 ~~~a~-~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l-~~~arD~~~~~vta~~fl~d~-~~l~~i~~D~~g 1262 (1431)
+..-. +.. + |.++...+++++.|-.-.+|.+..+. ..++ ..+.. +..+|+++. ++. +. ++-+-.++
T Consensus 324 l~l~~~h~~-~--V~~v~~~~~~lvsgs~d~~v~VW~~~--~~~cl~sl~g--H~~~V~sl~--~~~~~~--~~Sgs~D~ 392 (537)
T KOG0274|consen 324 LNLLRGHTG-P--VNCVQLDEPLLVSGSYDGTVKVWDPR--TGKCLKSLSG--HTGRVYSLI--VDSENR--LLSGSLDT 392 (537)
T ss_pred EEEeccccc-c--EEEEEecCCEEEEEecCceEEEEEhh--hceeeeeecC--CcceEEEEE--ecCcce--EEeeeecc
Confidence 44322 444 4 44555559999999888877666543 3332 22332 778899985 455 55 56666667
Q ss_pred cEEEEee
Q 000548 1263 NIQIFYY 1269 (1431)
Q Consensus 1263 Nl~vl~~ 1269 (1431)
-|.+..+
T Consensus 393 ~IkvWdl 399 (537)
T KOG0274|consen 393 TIKVWDL 399 (537)
T ss_pred ceEeecC
Confidence 7777654
No 136
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=50.73 E-value=1.1e+02 Score=37.20 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=72.5
Q ss_pred cCceEEEccc-cCeE-EEEe-CCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEecc-ccEE
Q 000548 1154 KGAISALASL-QGHL-LIAS-GPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQ-GAQL 1229 (1431)
Q Consensus 1154 ~g~V~al~~~-~g~L-l~~v-g~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~-~~~l 1229 (1431)
.--||+|.-- +|-+ +.|. +..+++|......+...++++. |++-..=.-.|++|+-|++-+-+.++.-... -.+-
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKG-PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCC-ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 3468888843 3544 4443 4688999999887777788888 6654444446789999998887776543211 1111
Q ss_pred EEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCC
Q 000548 1230 NLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSE 1275 (1431)
Q Consensus 1230 ~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~ 1275 (1431)
.+++.- ....+++ .+++. |+.++.+|.|+|++...+.|.
T Consensus 314 f~~~s~----~~lDVdW-~~~~~--F~ts~td~~i~V~kv~~~~P~ 352 (524)
T KOG0273|consen 314 FEFHSA----PALDVDW-QSNDE--FATSSTDGCIHVCKVGEDRPV 352 (524)
T ss_pred eeeccC----CccceEE-ecCce--EeecCCCceEEEEEecCCCcc
Confidence 222211 1234564 56666 788899999999988766554
No 137
>PHA02790 Kelch-like protein; Provisional
Probab=50.49 E-value=3e+02 Score=34.65 Aligned_cols=93 Identities=13% Similarity=-0.002 Sum_probs=59.9
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCC
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1251 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1251 (1431)
+.+..|+...++...++-... |-+-.++.+.++.|+| | + ..-.|+++.++-..++.=..+|.-.++. .++ +
T Consensus 376 ~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~~~~~IYv~G----G-~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~-~ 447 (480)
T PHA02790 376 TTTEYLLPNHDQWQFGPSTYY-PHYKSCALVFGRRLFLVG----R-NAEFYCESSNTWTLIDDPIYPRDNPELI-IVD-N 447 (480)
T ss_pred ccEEEEeCCCCEEEeCCCCCC-ccccceEEEECCEEEEEC----C-ceEEecCCCCcEeEcCCCCCCccccEEE-EEC-C
Confidence 456778887777766666555 5555566778887776 4 2 1345788888888887666677666665 345 5
Q ss_pred eeEEEEEeCCCc--EEEEeeCCCC
Q 000548 1252 TLSLVVSDEQKN--IQIFYYAPKM 1273 (1431)
Q Consensus 1252 ~l~~i~~D~~gN--l~vl~~~p~~ 1273 (1431)
.|+++|+...+. -.+-.|||+.
T Consensus 448 ~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 448 KLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEEECCcCCCcccceEEEEECCC
Confidence 788888754222 2345667764
No 138
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=50.22 E-value=1.4e+02 Score=37.16 Aligned_cols=141 Identities=20% Similarity=0.196 Sum_probs=88.1
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc--cccC-eEEEEeCC---eEEEEEcc
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA--SLQG-HLLIASGP---KIILHKWT 1181 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~--~~~g-~Ll~~vg~---~l~v~~~~ 1181 (1431)
..+++-|-. ..++.+|+... ++.+ ++-.+.+++|.||. +... -|+.|-|. .|.+|+..
T Consensus 313 ~~~lASGgn---------DN~~~Iwd~~~----~~p~---~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 313 GNQLASGGN---------DNVVFIWDGLS----PEPK---FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred CCeeccCCC---------ccceEeccCCC----cccc---EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 456666642 46888888832 1122 33377899999987 4444 45555554 45566665
Q ss_pred CCeeeeeEeecCCCeeEEEEEEeCCE--EE--EEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEE
Q 000548 1182 GTELNGIAFYDAPPLYVVSLNIVKNF--IL--LGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVV 1257 (1431)
Q Consensus 1182 ~~~L~~~a~~~~~~~~i~~l~~~~~~--Il--vGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~ 1257 (1431)
..+ ..-..++ ...|++|.-.+.. |+ .|....-|.+++|-. -.++..+.- +..-|.....-.|+.+ ++.
T Consensus 377 ~g~--~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~g--H~~RVl~la~SPdg~~--i~t 448 (484)
T KOG0305|consen 377 TGA--RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVAELLG--HTSRVLYLALSPDGET--IVT 448 (484)
T ss_pred CCc--Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceeeeecC--CcceeEEEEECCCCCE--EEE
Confidence 443 3334566 8889999887653 54 488888899998854 222222222 2223777764346566 888
Q ss_pred EeCCCcEEEEeeCCC
Q 000548 1258 SDEQKNIQIFYYAPK 1272 (1431)
Q Consensus 1258 ~D~~gNl~vl~~~p~ 1272 (1431)
+..+.||.++..-+.
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999886543
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.91 E-value=5.7e+02 Score=31.07 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=54.1
Q ss_pred EEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeec-CCCCC-
Q 000548 1065 VRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRN-ADNPQ- 1142 (1431)
Q Consensus 1065 v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~-~~~~~- 1142 (1431)
+.+++... .+|=+-+-|-| .+.++|++-+...+. .++...|++|||-- --|-||++.-. .--|.
T Consensus 154 vYVyn~~e--~nlYvHHD~il--pafPLC~ewld~~~~-~~~~gNyvAiGtmd---------p~IeIWDLDI~d~v~P~~ 219 (463)
T KOG0270|consen 154 VYVYNEEE--ENLYVHHDFIL--PAFPLCIEWLDHGSK-SGGAGNYVAIGTMD---------PEIEIWDLDIVDAVLPCV 219 (463)
T ss_pred EEEEcCCC--cceeEecceec--cCcchhhhhhhcCCC-CCCCcceEEEeccC---------ceeEEeccccccccccce
Confidence 34555532 24444443334 356788876655322 22344699999942 27888877531 11010
Q ss_pred -------ccEEEE-----EEEeecCceEEEccccC--eEEEEeC--CeEEEEEccC
Q 000548 1143 -------NLVTEV-----YSKELKGAISALASLQG--HLLIASG--PKIILHKWTG 1182 (1431)
Q Consensus 1143 -------~~l~lv-----~~~~~~g~V~al~~~~g--~Ll~~vg--~~l~v~~~~~ 1182 (1431)
.+.+.. ...-...+|.+|..... .+||+-+ ++|.+|++..
T Consensus 220 ~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~ 275 (463)
T KOG0270|consen 220 TLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT 275 (463)
T ss_pred eechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC
Confidence 011111 11123456777764332 4565544 7999999975
No 140
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=48.77 E-value=36 Score=41.58 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=61.4
Q ss_pred CceEEEccc-cCeEEEEeCC--eEEEEEccCCeeeeeEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEE
Q 000548 1155 GAISALASL-QGHLLIASGP--KIILHKWTGTELNGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLN 1230 (1431)
Q Consensus 1155 g~V~al~~~-~g~Ll~~vg~--~l~v~~~~~~~L~~~a~-~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~ 1230 (1431)
|+|..++-. +|+.||+|++ .|+||+++..+|+.+.- |-. ....++-+..+.||++|---+=|+++.|- +.+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~--erR-- 365 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFE--ERR-- 365 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEec--cce--
Confidence 344444422 5788888875 78999999888876432 333 45556667788999999877888888774 344
Q ss_pred Eeeec-cCCccEEEEEE
Q 000548 1231 LLAKD-FGSLDCFATEF 1246 (1431)
Q Consensus 1231 ~~arD-~~~~~vta~~f 1246 (1431)
++||- -+.-||+.+.|
T Consensus 366 VVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 366 VVARGQGHKSWVSVVAF 382 (636)
T ss_pred EEEeccccccceeeEee
Confidence 56775 46779999997
No 141
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=48.65 E-value=4.9e+02 Score=30.21 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=78.9
Q ss_pred ceEEE--ccccCeEEEEe-CCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEE---eccccEE
Q 000548 1156 AISAL--ASLQGHLLIAS-GPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSW---KEQGAQL 1229 (1431)
Q Consensus 1156 ~V~al--~~~~g~Ll~~v-g~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~---~~~~~~l 1229 (1431)
.|.+| ++.++.++.+. -.+|++|++.-++-...--.. +..|......|-+.++|-=-+.|.++.. +..+-+-
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 44444 45677666554 469999999843311100000 1122222223333444433334555433 3333332
Q ss_pred EEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCC
Q 000548 1230 NLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDR 1309 (1431)
Q Consensus 1230 ~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~ 1309 (1431)
..+-. ...-..+.++|--|+.. ++.++..+.++++. ...|..+.....+.-+..++ ....+.|.
T Consensus 180 f~i~~-~~~~ew~~l~FS~dGK~--iLlsT~~s~~~~lD-------Af~G~~~~tfs~~~~~~~~~--~~a~ftPd---- 243 (311)
T KOG1446|consen 180 FSITD-NDEAEWTDLEFSPDGKS--ILLSTNASFIYLLD-------AFDGTVKSTFSGYPNAGNLP--LSATFTPD---- 243 (311)
T ss_pred EccCC-CCccceeeeEEcCCCCE--EEEEeCCCcEEEEE-------ccCCcEeeeEeeccCCCCcc--eeEEECCC----
Confidence 22222 33445688999777777 78899999999985 22355444444433333222 11122331
Q ss_pred CCCCCCCCCCCceEEEEEcCCCcEEEEE
Q 000548 1310 TGAAPGSDKTNRFALLFGTLDGSIGCIA 1337 (1431)
Q Consensus 1310 ~~~~~g~~~~~~~~il~~T~~GsIg~l~ 1337 (1431)
..-|+.|.-+|.|.+--
T Consensus 244 -----------s~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 244 -----------SKFVLSGSDDGTIHVWN 260 (311)
T ss_pred -----------CcEEEEecCCCcEEEEE
Confidence 35677788889996543
No 142
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.65 E-value=1.1e+02 Score=34.11 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=64.2
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEccc---cCeEEEEe--CCeEEEEEccCCeeeeeEeecCCCeeE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALASL---QGHLLIAS--GPKIILHKWTGTELNGIAFYDAPPLYV 1198 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~-~~~~g~V~al~~~---~g~Ll~~v--g~~l~v~~~~~~~L~~~a~~~~~~~~i 1198 (1431)
+.|-|.+|++..+. ..+++.+ +-.+|||.-+.-- -|-|||+. -.||.||+-+..+..+...+......|
T Consensus 31 SD~tVkIf~v~~n~-----~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SV 105 (299)
T KOG1332|consen 31 SDGTVKIFEVRNNG-----QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASV 105 (299)
T ss_pred CCccEEEEEEcCCC-----CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccc
Confidence 46789999997642 1333333 4468999988732 35666554 479999999877666655543323345
Q ss_pred EEEEEe----CCEEEEEeccccEEEEEEecc
Q 000548 1199 VSLNIV----KNFILLGDIHKSIYFLSWKEQ 1225 (1431)
Q Consensus 1199 ~~l~~~----~~~IlvGD~~~Sv~ll~~~~~ 1225 (1431)
.++.-. +=.+++|-.--.|++|.|+.+
T Consensus 106 NsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred eeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 555542 346777888888999999876
No 143
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=47.85 E-value=65 Score=40.91 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=82.8
Q ss_pred CCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee--cCceEEEcccc-
Q 000548 1088 SENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL--KGAISALASLQ- 1164 (1431)
Q Consensus 1088 ~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~--~g~V~al~~~~- 1164 (1431)
.+..+|+++++ ....++|.||+ +||+-+|.+.+. .+ ..+.++...+. +-.|+|++--.
T Consensus 75 ~~~~~~~~~vs-------~~e~lvAagt~---------~g~V~v~ql~~~-~p--~~~~~~t~~d~~~~~rVTal~Ws~~ 135 (726)
T KOG3621|consen 75 ATGITCVRSVS-------SVEYLVAAGTA---------SGRVSVFQLNKE-LP--RDLDYVTPCDKSHKCRVTALEWSKN 135 (726)
T ss_pred ccceEEEEEec-------chhHhhhhhcC---------CceEEeehhhcc-CC--CcceeeccccccCCceEEEEEeccc
Confidence 45555655553 24568888884 899999999873 21 23666666666 88999999653
Q ss_pred C-eEEEEeC-CeEEEEEccCCe--eeeeEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeecc
Q 000548 1165 G-HLLIASG-PKIILHKWTGTE--LNGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDF 1236 (1431)
Q Consensus 1165 g-~Ll~~vg-~~l~v~~~~~~~--L~~~a~-~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~ 1236 (1431)
+ ++..|-- .+|..-+++... +-+... +.. ...|++|.....+++|....+++-+ +.|..++..+++-.
T Consensus 136 ~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~-ds~IVQlD~~q~~LLVStl~r~~Lc---~tE~eti~QIG~k~ 208 (726)
T KOG3621|consen 136 GMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE-DSEIVQLDYLQSYLLVSTLTRCILC---QTEAETITQIGKKP 208 (726)
T ss_pred ccEEeecCCCceEEEEEechhhhhccccceeecc-CcceEEeecccceehHhhhhhhhee---ecchhHHHHhcCCC
Confidence 3 5666543 466667776521 111111 223 7789999999999999999999754 44555566666543
No 144
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.52 E-value=6.1e+02 Score=30.42 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=50.5
Q ss_pred cCeEEEE-eCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEE
Q 000548 1164 QGHLLIA-SGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCF 1242 (1431)
Q Consensus 1164 ~g~Ll~~-vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vt 1242 (1431)
+++++++ .+..++.|+....+++=.... +. .......+++|++++....+..+ +...+++.---.+.......
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~~-~~~p~~~~~~vyv~~~~G~l~~~--d~~tG~~~W~~~~~~~~~~s 314 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA---SS-YQGPAVDDNRLYVTDADGVVVAL--DRRSGSELWKNDELKYRQLT 314 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeecc---CC-ccCceEeCCEEEEECCCCeEEEE--ECCCCcEEEccccccCCccc
Confidence 5666554 456888888865443221111 11 12233568899998855555444 44444332211111111222
Q ss_pred EEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1243 ATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1243 a~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
+. .+.++. +++++.+|.|+++.
T Consensus 315 sp--~i~g~~--l~~~~~~G~l~~~d 336 (377)
T TIGR03300 315 AP--AVVGGY--LVVGDFEGYLHWLS 336 (377)
T ss_pred cC--EEECCE--EEEEeCCCEEEEEE
Confidence 22 245566 67789999999985
No 145
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.39 E-value=78 Score=40.53 Aligned_cols=117 Identities=16% Similarity=0.196 Sum_probs=70.9
Q ss_pred eEEEeeecCCcEEEEEecCcEEEEcCC--cceEEEeCCCCC-CCCCCCCCCccE--EEEEEeCCEEEEEEeCCcEEEEEe
Q 000548 611 TIAAGNLFGRRRVIQVFERGARILDGS--YMTQDLSFGPSN-SESGSGSENSTV--LSVSIADPYVLLGMSDGSIRLLVG 685 (1431)
Q Consensus 611 TI~~g~l~~~~~ivQVt~~~irl~~~~--~~~~~~~~~~~~-~~~~~~~~~~~I--~~as~~d~~vll~~~~g~i~~l~~ 685 (1431)
-|+||-+ ++-.-|+++||+--+..+. .-++-|...... ....++ ....| +.-|.|+.|++..-.+|.|.++.+
T Consensus 529 Rifaghl-sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 529 RIFAGHL-SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhcccc-cccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 5677777 5666778888887776653 244556553211 000011 11234 444558889998888999999876
Q ss_pred cCCCceEEeecCcccccCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEEecCCeEEE
Q 000548 686 DPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVCYESGALEI 765 (1431)
Q Consensus 686 ~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~I 765 (1431)
.......... +. .+.|.++++..|. ..+|++..|.+|++
T Consensus 607 ~~~~~v~~l~-----~H-t~ti~SlsFS~dg-----------------------------------~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 607 ANGSLVKQLK-----GH-TGTIYSLSFSRDG-----------------------------------NVLASGGADNSVRL 645 (707)
T ss_pred CCCcchhhhh-----cc-cCceeEEEEecCC-----------------------------------CEEEecCCCCeEEE
Confidence 5422111111 12 5567788774443 28889999999999
Q ss_pred EECCC
Q 000548 766 FDVPN 770 (1431)
Q Consensus 766 ~sLp~ 770 (1431)
|.+..
T Consensus 646 WD~~~ 650 (707)
T KOG0263|consen 646 WDLTK 650 (707)
T ss_pred EEchh
Confidence 97754
No 146
>PRK01742 tolB translocation protein TolB; Provisional
Probab=43.60 E-value=2.6e+02 Score=34.60 Aligned_cols=95 Identities=11% Similarity=0.149 Sum_probs=54.9
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCC
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1251 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvG-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1251 (1431)
..|++|++...+......... .......+..+++|+++ +--..+.++.++.+.+.+..+... ...+++..|-.|+.
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~--~~~~~~~~wSpDG~ 304 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG--AGNNTEPSWSPDGQ 304 (429)
T ss_pred cEEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC--CCCcCCEEECCCCC
Confidence 368888887554333333332 22223444456777764 444445666676655555555432 22456677766777
Q ss_pred eeEEEEEeCCCcEEEEeeCC
Q 000548 1252 TLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1252 ~l~~i~~D~~gNl~vl~~~p 1271 (1431)
.| ++++|+.|+..++.++.
T Consensus 305 ~i-~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 305 SI-LFTSDRSGSPQVYRMSA 323 (429)
T ss_pred EE-EEEECCCCCceEEEEEC
Confidence 76 55678888877777654
No 147
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=43.31 E-value=5.2e+02 Score=32.59 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=35.4
Q ss_pred EEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCc
Q 000548 1199 VSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKN 1263 (1431)
Q Consensus 1199 ~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gN 1263 (1431)
..+.+.+++|++||. ++ .++.|+.+..++.---+=..+...+-+.| ..++++++...|--+-
T Consensus 400 ~~~~~~g~~v~~g~~-dG-~l~ald~~tG~~lW~~~~~~~~~a~P~~~-~~~g~~yv~~~~g~~~ 461 (488)
T cd00216 400 GSLATAGNLVFAGAA-DG-YFRAFDATTGKELWKFRTPSGIQATPMTY-EVNGKQYVGVMVGGGG 461 (488)
T ss_pred cceEecCCeEEEECC-CC-eEEEEECCCCceeeEEECCCCceEcCEEE-EeCCEEEEEEEecCCc
Confidence 445667899999994 44 35667777766554433333333444443 3446775555554333
No 148
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=42.23 E-value=36 Score=25.42 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhhh
Q 000548 1402 EQLEIAHQTGTTRSQILSNLNDLAL 1426 (1431)
Q Consensus 1402 ~q~~ia~~l~~~~~~i~~~l~~l~~ 1426 (1431)
.+++||+.+|.+++.+.+.|..+++
T Consensus 4 tr~diA~~lG~t~ETVSR~l~~l~~ 28 (32)
T PF00325_consen 4 TRQDIADYLGLTRETVSRILKKLER 28 (32)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3789999999999999999988875
No 149
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=41.65 E-value=2.3e+02 Score=38.53 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=67.5
Q ss_pred eEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEE-eCCeEEEEEccCC--ee--eeeEeecCCCeeEEEEE
Q 000548 1128 RVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIA-SGPKIILHKWTGT--EL--NGIAFYDAPPLYVVSLN 1202 (1431)
Q Consensus 1128 ri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~-vg~~l~v~~~~~~--~L--~~~a~~~~~~~~i~~l~ 1202 (1431)
.|+++++.++ ..|.=+.=.+..--|+++..++++|++| +=+.|....|+.+ +| ..+.+-.. ..|.+..-
T Consensus 1117 KI~v~~l~r~-----~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l-~v~s~EFL 1190 (1366)
T KOG1896|consen 1117 KIIVRKLDRD-----SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPL-NVYSTEFL 1190 (1366)
T ss_pred EEEEEEeccC-----CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchh-hceeeeeE
Confidence 7899999653 2255555566777788888999999877 4577888777653 44 34444444 66777777
Q ss_pred EeCC--EEEEEeccccEEEEEEecc
Q 000548 1203 IVKN--FILLGDIHKSIYFLSWKEQ 1225 (1431)
Q Consensus 1203 ~~~~--~IlvGD~~~Sv~ll~~~~~ 1225 (1431)
+.|+ ..+|.|+-+-|.++.|.++
T Consensus 1191 Vdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1191 VDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred EcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 7775 7889999999999999875
No 150
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=41.49 E-value=5.1e+02 Score=30.47 Aligned_cols=177 Identities=15% Similarity=0.118 Sum_probs=0.0
Q ss_pred CceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccE----EEEEEE
Q 000548 1076 PWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLV----TEVYSK 1151 (1431)
Q Consensus 1076 ~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l----~lv~~~ 1151 (1431)
.|..+.....+......++. ....+++| +....+. ...+..|++.. .+. +.+...
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~-----------~~~lyviG-G~~~~~~---~~~v~~~d~~~------~~w~~~~~~~~~l 110 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV-----------ENGIYYIG-GSNSSER---FSSVYRITLDE------SKEELICETIGNL 110 (323)
T ss_pred eEEEcccCCccccceEEEEE-----------CCEEEEEc-CCCCCCC---ceeEEEEEEcC------CceeeeeeEcCCC
Q ss_pred eecCceEEEccccCeEEEEeCC-------eEEEEEccCCeeeeeEeec-CCCeeEEEEEEeCCEEEE---EeccccEEEE
Q 000548 1152 ELKGAISALASLQGHLLIASGP-------KIILHKWTGTELNGIAFYD-APPLYVVSLNIVKNFILL---GDIHKSIYFL 1220 (1431)
Q Consensus 1152 ~~~g~V~al~~~~g~Ll~~vg~-------~l~v~~~~~~~L~~~a~~~-~~~~~i~~l~~~~~~Ilv---GD~~~Sv~ll 1220 (1431)
+..-.-.+.+.++++|.+.-|. .+..|++..++....+-+. . +-.-..+.+.++.|+| .|-.....+.
T Consensus 111 p~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~ 189 (323)
T TIGR03548 111 PFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGY 189 (323)
T ss_pred CcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceE
Q ss_pred EEeccccEEEEee-----eccCCccEEEEEEEecCCeeEEEEEeCCC---------------------------------
Q 000548 1221 SWKEQGAQLNLLA-----KDFGSLDCFATEFLIDGSTLSLVVSDEQK--------------------------------- 1262 (1431)
Q Consensus 1221 ~~~~~~~~l~~~a-----rD~~~~~vta~~fl~d~~~l~~i~~D~~g--------------------------------- 1262 (1431)
.|+++.++-..++ +-+.++...+.. .+.++.|+++++....
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASI-KINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYN 268 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEE-EECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccC
Q ss_pred -cEEEEeeCCCCCC
Q 000548 1263 -NIQIFYYAPKMSE 1275 (1431)
Q Consensus 1263 -Nl~vl~~~p~~~~ 1275 (1431)
+=.++.|||...+
T Consensus 269 ~~~~v~~yd~~~~~ 282 (323)
T TIGR03548 269 WNRKILIYNVRTGK 282 (323)
T ss_pred cCceEEEEECCCCe
No 151
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.44 E-value=7.1e+02 Score=30.04 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=64.1
Q ss_pred eEEEc-cccCe--EEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEe-
Q 000548 1157 ISALA-SLQGH--LLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLL- 1232 (1431)
Q Consensus 1157 V~al~-~~~g~--Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~- 1232 (1431)
|+.|+ ..+|+ +++++-+++++|..+.+.=+.+-..+. |..-.+|+-.+.+++|-=.-+.+.+..++ +++++.-
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~-~its~~iS~d~k~~LvnL~~qei~LWDl~--e~~lv~kY 433 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ-PITSFSISKDGKLALVNLQDQEIHLWDLE--ENKLVRKY 433 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC-ceeEEEEcCCCcEEEEEcccCeeEEeecc--hhhHHHHh
Confidence 44444 24553 456677899999987653222222233 33333444445588888777888887665 4444322
Q ss_pred eeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1233 AKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1233 arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
-...+.+.+...+|--.+++ +++.+-.++-+++...
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~-fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDK-FIASGSEDSKVYIWHR 469 (519)
T ss_pred hcccccceEEEeccCCCCcc-eEEecCCCceEEEEEc
Confidence 22334567777777433334 2666777999999864
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=40.84 E-value=2.9e+02 Score=32.97 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=89.1
Q ss_pred ecCceEEE--ccccCeEEEEeC--CeEEEEEccCCeee-----eeEeecC----------CCe--eEEEEEEeCCEEEEE
Q 000548 1153 LKGAISAL--ASLQGHLLIASG--PKIILHKWTGTELN-----GIAFYDA----------PPL--YVVSLNIVKNFILLG 1211 (1431)
Q Consensus 1153 ~~g~V~al--~~~~g~Ll~~vg--~~l~v~~~~~~~L~-----~~a~~~~----------~~~--~i~~l~~~~~~IlvG 1211 (1431)
.+|+|.-+ |.||+..+|+-+ .+|+||++.+.-|. ++.++.. .|+ -|.--...+|.|.+.
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 45676655 578998887754 68999999654221 1222211 011 111111235677777
Q ss_pred eccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecC
Q 000548 1212 DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVG 1291 (1431)
Q Consensus 1212 D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg 1291 (1431)
++-.+..++.. . +|--|+++.|--|++. ++.+-++.-|.++. |.. .+++..+.-|-|
T Consensus 160 nv~tgeali~l----------~---hpd~i~S~sfn~dGs~--l~TtckDKkvRv~d--pr~------~~~v~e~~~heG 216 (472)
T KOG0303|consen 160 NVGTGEALITL----------D---HPDMVYSMSFNRDGSL--LCTTCKDKKVRVID--PRR------GTVVSEGVAHEG 216 (472)
T ss_pred eccCCceeeec----------C---CCCeEEEEEeccCCce--eeeecccceeEEEc--CCC------CcEeeecccccC
Confidence 76666555532 1 6677889998667776 77888899999874 432 234444444555
Q ss_pred cceeEEEEEe---eecCC----CCCCCCCCCCCCCCceEEEEEcCCCcEEEEEeCCh
Q 000548 1292 AHVTKFLRLQ---MLATS----SDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPLDE 1341 (1431)
Q Consensus 1292 ~~vt~~~~~~---~~~~~----~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl~e 1341 (1431)
....+..-.. +.... +++..+--+.+. ....+.+-++++|=|++.|+-+
T Consensus 217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n-l~eP~~~~elDtSnGvl~PFyD 272 (472)
T KOG0303|consen 217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNN-LEEPIALQELDTSNGVLLPFYD 272 (472)
T ss_pred CCcceeEEeccCceeeeccccccccceeccCccc-ccCcceeEEeccCCceEEeeec
Confidence 4443322110 00000 000000000011 1233888899999999999944
No 153
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=40.81 E-value=4e+02 Score=32.03 Aligned_cols=125 Identities=10% Similarity=0.149 Sum_probs=64.8
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC-CeEEEEEccCCeee-eeEeecCCCeeEEEEEE
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG-PKIILHKWTGTELN-GIAFYDAPPLYVVSLNI 1203 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg-~~l~v~~~~~~~L~-~~a~~~~~~~~i~~l~~ 1203 (1431)
.|.++.|+... + +++...+..+ ..+....+++|+++.. ..|+.++....+++ +..-... ....+...
T Consensus 250 ~g~l~a~d~~t----G----~~~W~~~~~~-~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i 318 (377)
T TIGR03300 250 QGRVAALDLRS----G----RVLWKRDASS-YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPAV 318 (377)
T ss_pred CCEEEEEECCC----C----cEEEeeccCC-ccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCEE
Confidence 57788877742 1 1223333222 2222234677776654 57888888655433 2111111 12223344
Q ss_pred eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCc-cEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1204 VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSL-DCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1204 ~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~-~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
.+++|++|+.-..+.++ +...+++.- +-.... .+.+.- .+-++. ++++..+|+|+.|+
T Consensus 319 ~g~~l~~~~~~G~l~~~--d~~tG~~~~--~~~~~~~~~~~sp-~~~~~~--l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWL--SREDGSFVA--RLKTDGSGIASPP-VVVGDG--LLVQTRDGDLYAFR 377 (377)
T ss_pred ECCEEEEEeCCCEEEEE--ECCCCCEEE--EEEcCCCccccCC-EEECCE--EEEEeCCceEEEeC
Confidence 68999999977666654 555454432 211111 123222 233456 56678899999874
No 154
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=40.57 E-value=5.5e+02 Score=28.45 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=55.9
Q ss_pred eeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCC-CCCcc---E-EEEEEEeec
Q 000548 1080 RATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNAD-NPQNL---V-TEVYSKELK 1154 (1431)
Q Consensus 1080 ~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~-~~~~~---l-~lv~~~~~~ 1154 (1431)
+.-+|++-.|.++|+.+|.+. + =|+||+ +.+|.+|++..... ..+.+ + +.+.....+
T Consensus 126 leiiElPl~~~p~ciaCC~~t----G----~LlVg~----------~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 126 LEIIELPLSEPPLCIACCPVT----G----NLLVGC----------GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred eEEEEecCCCCCCEEEecCCC----C----CEEEEc----------CCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 456789999999999999874 2 377886 66888888865321 11111 1 122233345
Q ss_pred CceEEEccccCeEEEEeCCeEEEEEcc
Q 000548 1155 GAISALASLQGHLLIASGPKIILHKWT 1181 (1431)
Q Consensus 1155 g~V~al~~~~g~Ll~~vg~~l~v~~~~ 1181 (1431)
..+.-++-..||+.+.....+.++++.
T Consensus 188 ~~p~~v~ic~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAICEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEEeeEEEEecCCEEEEEEEe
Confidence 567777777788888877888888764
No 155
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=39.85 E-value=1.3e+02 Score=34.29 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=49.7
Q ss_pred CCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-
Q 000548 1085 MQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL- 1163 (1431)
Q Consensus 1085 l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~- 1163 (1431)
+..--.++||.++.-.. ...+...++|||| ..|.||+++-. -+.++++..+.+++..|+..
T Consensus 173 l~~~t~ITcm~tikk~~-~d~~a~scLViGT---------E~~~i~iLd~~--------af~il~~~~lpsvPv~i~~~G 234 (257)
T PF14779_consen 173 LKRQTVITCMATIKKSS-ADEDAVSCLVIGT---------ESGEIYILDPQ--------AFTILKQVQLPSVPVFISVSG 234 (257)
T ss_pred cccCceeEEeeeecccc-cCCCCcceEEEEe---------cCCeEEEECch--------hheeEEEEecCCCceEEEEEe
Confidence 33344668887765432 2334568999999 58999987653 27888888898887777643
Q ss_pred -----cCeEEEEe-CCeEEE
Q 000548 1164 -----QGHLLIAS-GPKIIL 1177 (1431)
Q Consensus 1164 -----~g~Ll~~v-g~~l~v 1177 (1431)
+.+|+++. +++|++
T Consensus 235 ~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 235 QYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred eeeccceEEEEEeCCCEEEE
Confidence 33565544 456664
No 156
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=39.25 E-value=5.9e+02 Score=28.74 Aligned_cols=128 Identities=18% Similarity=0.207 Sum_probs=69.7
Q ss_pred ccccceEEEeeecCCc--EEEEEecCcEEEEcCCc-ceEEEeCCCCC-CCC--CCCCCCccEEEEEEeCCEEEEEEeCCc
Q 000548 606 FVQGRTIAAGNLFGRR--RVIQVFERGARILDGSY-MTQDLSFGPSN-SES--GSGSENSTVLSVSIADPYVLLGMSDGS 679 (1431)
Q Consensus 606 ~~~~~TI~~g~l~~~~--~ivQVt~~~irl~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~I~~as~~d~~vll~~~~g~ 679 (1431)
..+.|.|++..---.. .|--+-..++|+++... +.|.+.+.... .+. +.+-.+.+|.-|...|.+ +..
T Consensus 52 aADDPAIwVh~t~P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~------~~~ 125 (364)
T COG4247 52 AADDPAIWVHATNPDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQ------NDK 125 (364)
T ss_pred ccCCcceEeccCCcCcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEeccccc------CCe
Confidence 3566777776653222 23344467899988553 55555443211 111 111123345444445553 677
Q ss_pred EEEEEecCCCceEE-eecCc-ccccCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCCCCcEEEEEE
Q 000548 680 IRLLVGDPSTCTVS-VQTPA-AIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVVC 757 (1431)
Q Consensus 680 i~~l~~~~~~~~l~-~~~~~-~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 757 (1431)
|++|.+++....|+ +.+.- ......++.-.+|+|.+. +...++++|.
T Consensus 126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~-------------------------------ktgd~yvfV~ 174 (364)
T COG4247 126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSP-------------------------------KTGDYYVFVN 174 (364)
T ss_pred EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecC-------------------------------CcCcEEEEEe
Confidence 88889887655553 22220 011112233445565552 1347899999
Q ss_pred ecCCeEEEEECCC
Q 000548 758 YESGALEIFDVPN 770 (1431)
Q Consensus 758 ~~~g~l~I~sLp~ 770 (1431)
..+|.++-|+|-+
T Consensus 175 ~~qG~~~Qy~l~d 187 (364)
T COG4247 175 RRQGDIAQYKLID 187 (364)
T ss_pred cCCCceeEEEEEe
Confidence 8889999999865
No 157
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=38.86 E-value=4.1e+02 Score=30.14 Aligned_cols=101 Identities=9% Similarity=0.139 Sum_probs=63.4
Q ss_pred cCeEEEE-eCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEE
Q 000548 1164 QGHLLIA-SGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCF 1242 (1431)
Q Consensus 1164 ~g~Ll~~-vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vt 1242 (1431)
.+.+.++ .|.+|++|+....+-...-.... ......-+..++++++|+--.=|+++--+ +...+..-..+..+-
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r----~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKG-ENINITWSPDGEYIAVGNKDDRITFIDAR----TYKIVNEEQFKFEVN 151 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccC-cceEEEEcCCCCEEEEecCcccEEEEEec----ccceeehhcccceee
Confidence 3455544 45789999997654322222332 33444456789999999998888887432 222333344555666
Q ss_pred EEEEEecCCeeEEEEEeCCCcEEEEeeCC
Q 000548 1243 ATEFLIDGSTLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1243 a~~fl~d~~~l~~i~~D~~gNl~vl~~~p 1271 (1431)
.+.+-.+ +.| |+...-.|.+-+|.|+.
T Consensus 152 e~~w~~~-nd~-Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 152 EISWNNS-NDL-FFLTNGLGCVEILSYPS 178 (313)
T ss_pred eeeecCC-CCE-EEEecCCceEEEEeccc
Confidence 6666434 455 56678889999999863
No 158
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.83 E-value=1.4e+02 Score=38.33 Aligned_cols=99 Identities=22% Similarity=0.276 Sum_probs=63.0
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc-cccCeEEEEeC--CeEEEEEccCC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA-SLQGHLLIASG--PKIILHKWTGT 1183 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~-~~~g~Ll~~vg--~~l~v~~~~~~ 1183 (1431)
+..|++=|.+ .-.+.+|++... ...++ + .-.+++|+||+ +-+|+.|+.-+ +.|.+|++...
T Consensus 546 Ns~Y~aTGSs---------D~tVRlWDv~~G-----~~VRi-F-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 546 NSNYVATGSS---------DRTVRLWDVSTG-----NSVRI-F-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cccccccCCC---------CceEEEEEcCCC-----cEEEE-e-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 4556666642 446778888753 22333 2 34789999998 34777665544 68899999986
Q ss_pred eeeeeEe-ecCCCeeEEEEEEeCCEEEEEeccccEEEEEE
Q 000548 1184 ELNGIAF-YDAPPLYVVSLNIVKNFILLGDIHKSIYFLSW 1222 (1431)
Q Consensus 1184 ~L~~~a~-~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~ 1222 (1431)
+++..-+ +.. ..+-.+....++.+++|-+-.||.+.-+
T Consensus 610 ~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 610 SLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred cchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 5544222 133 3444455556778888888888888754
No 159
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=37.70 E-value=3.5e+02 Score=34.36 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=72.9
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEE----eecCceEEEcccc-CeEEEEeC--CeEEEEEccC-CeeeeeEeecCCCee
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSK----ELKGAISALASLQ-GHLLIASG--PKIILHKWTG-TELNGIAFYDAPPLY 1197 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~----~~~g~V~al~~~~-g~Ll~~vg--~~l~v~~~~~-~~L~~~a~~~~~~~~ 1197 (1431)
.++|.+|++...+..--.....+... --+.+||+++.-+ |.++++-| +-|++|+... +++.+.-=+.. .+-
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-NVr 217 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-NVR 217 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc-ceE
Confidence 67999999974321000001111111 2356889988543 46666655 4578898864 34444332222 344
Q ss_pred EEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1198 VVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1198 i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
+.-+...|.+++-|-.---|-+.....+.-.....+-. ...|...+. .+-+. +..+|++|||+.-.
T Consensus 218 ~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~-e~VWaL~~~--~sf~~--vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 218 VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK-EGVWALQSS--PSFTH--VYSGGRDGNIYRTD 283 (735)
T ss_pred EEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc-CceEEEeeC--CCcce--EEecCCCCcEEecc
Confidence 44455567788876655555555443222222222222 225555444 22234 78899999998754
No 160
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.57 E-value=99 Score=41.28 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=67.0
Q ss_pred ceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEcc-ccCeEEE-EeC-CeEEEEEccCC
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALAS-LQGHLLI-ASG-PKIILHKWTGT 1183 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~-~~~~g~V~al~~-~~g~Ll~-~vg-~~l~v~~~~~~ 1183 (1431)
...|++|| ++|.++.++..- .|+.+|. +.+.|||++++- -+|++++ |-+ .-|.+|+...+
T Consensus 99 ~~~ivi~T---------s~ghvl~~d~~~-------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 99 VVPIVIGT---------SHGHVLLSDMTG-------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeEEEEc---------Cchhhhhhhhhc-------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 35899999 589999988864 2554444 567899999994 3566554 433 34889999986
Q ss_pred eeee-eEeecCCCeeEE-EEEEeCC-EEEEEeccccEEEEEEec
Q 000548 1184 ELNG-IAFYDAPPLYVV-SLNIVKN-FILLGDIHKSIYFLSWKE 1224 (1431)
Q Consensus 1184 ~L~~-~a~~~~~~~~i~-~l~~~~~-~IlvGD~~~Sv~ll~~~~ 1224 (1431)
++.+ .-+...-..++. ...+-+| .++.+|...|+|=+.|..
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~lv~nk 206 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWKLVFNK 206 (1206)
T ss_pred cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEEEEech
Confidence 6444 444433123333 3333344 688999999998888864
No 161
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=34.50 E-value=3.5e+02 Score=27.65 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=44.6
Q ss_pred CcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc--c-----cCeEEEEeCCeEEEE
Q 000548 1106 ENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS--L-----QGHLLIASGPKIILH 1178 (1431)
Q Consensus 1106 ~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~--~-----~g~Ll~~vg~~l~v~ 1178 (1431)
+..+.|+..| ..|+|+++.-..........=..+..-.++-.|+||+. + .+-|++|.-+.|..|
T Consensus 8 G~~pcL~~aT---------~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 8 GVHPCLACAT---------TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CCceeEEEEe---------cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Confidence 3567888888 37888888665322111001112333557778888863 4 356999999999999
Q ss_pred EccCC
Q 000548 1179 KWTGT 1183 (1431)
Q Consensus 1179 ~~~~~ 1183 (1431)
+..++
T Consensus 79 DV~~N 83 (136)
T PF14781_consen 79 DVENN 83 (136)
T ss_pred EcccC
Confidence 99865
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=34.21 E-value=1.1e+02 Score=36.93 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCccEEEEEEEecCC-eeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEec-CcceeEEEEEeeecCCCCCCCCCC
Q 000548 1237 GSLDCFATEFLIDGS-TLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHV-GAHVTKFLRLQMLATSSDRTGAAP 1314 (1431)
Q Consensus 1237 ~~~~vta~~fl~d~~-~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhl-g~~vt~~~~~~~~~~~~~~~~~~~ 1314 (1431)
.++.+++++|..-++ +| ++++|+.|++-+..+.-+.++ -...--|+. +..|+++. +.|.
T Consensus 185 ~~~Rit~l~fHPt~~~~l-va~GdK~G~VG~Wn~~~~~~d------~d~v~~f~~hs~~Vs~l~---F~P~--------- 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKL-VAVGDKGGQVGLWNFGTQEKD------KDGVYLFTPHSGPVSGLK---FSPA--------- 245 (498)
T ss_pred cccceEEEEecccCcceE-EEEccCCCcEEEEecCCCCCc------cCceEEeccCCccccceE---ecCC---------
Confidence 467799999988777 66 899999999999887522211 122333443 34566654 2332
Q ss_pred CCCCCCceEEEEEcCCCcEEEEEeCChHhHHHHHHH
Q 000548 1315 GSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSL 1350 (1431)
Q Consensus 1315 g~~~~~~~~il~~T~~GsIg~l~pl~e~~~~~L~~L 1350 (1431)
+-..|+..+-+|+|++ ..+....++.+..+
T Consensus 246 -----n~s~i~ssSyDGtiR~-~D~~~~i~e~v~s~ 275 (498)
T KOG4328|consen 246 -----NTSQIYSSSYDGTIRL-QDFEGNISEEVLSL 275 (498)
T ss_pred -----ChhheeeeccCceeee-eeecchhhHHHhhc
Confidence 1246888899999965 56655555555555
No 163
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=33.98 E-value=1.1e+02 Score=39.84 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecC--Ce--eEEEEEeCCCcEEEEee
Q 000548 1205 KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG--ST--LSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1205 ~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~--~~--l~~i~~D~~gNl~vl~~ 1269 (1431)
-.+|+||+=..+|+++.|...+.++...........|=++.|+-++ .. +.++++|..||+++++.
T Consensus 177 ~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4689999999999999998765555544433466778899986544 11 34789999999999887
No 164
>PLN02153 epithiospecifier protein
Probab=33.85 E-value=8.6e+02 Score=28.77 Aligned_cols=84 Identities=7% Similarity=-0.005 Sum_probs=43.5
Q ss_pred eEEEEEccCCeeeeeEeec-C-CCeeEEEEEEeCCEEEE-Eecc-----------ccEEEEEEeccccEEEEeeec---c
Q 000548 1174 KIILHKWTGTELNGIAFYD-A-PPLYVVSLNIVKNFILL-GDIH-----------KSIYFLSWKEQGAQLNLLAKD---F 1236 (1431)
Q Consensus 1174 ~l~v~~~~~~~L~~~a~~~-~-~~~~i~~l~~~~~~Ilv-GD~~-----------~Sv~ll~~~~~~~~l~~~arD---~ 1236 (1431)
.+.+|++..++-....... . .+-.-.++.+.++.|+| |-.- ..=.+..|+.+.++-..+... +
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 4667887766544332221 0 01122234456665554 4211 112355678777777777532 4
Q ss_pred CCccEEEEEEEecCCeeEEEEEe
Q 000548 1237 GSLDCFATEFLIDGSTLSLVVSD 1259 (1431)
Q Consensus 1237 ~~~~vta~~fl~d~~~l~~i~~D 1259 (1431)
.+|...++. .++ +.|+++++.
T Consensus 240 ~~r~~~~~~-~~~-~~iyv~GG~ 260 (341)
T PLN02153 240 SARSVFAHA-VVG-KYIIIFGGE 260 (341)
T ss_pred CCcceeeeE-EEC-CEEEEECcc
Confidence 456555554 344 678777774
No 165
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=33.80 E-value=1.9e+02 Score=38.14 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=73.2
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEee-cCceEEEccccCeEEEEeCCeE----------
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKEL-KGAISALASLQGHLLIASGPKI---------- 1175 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~-~g~V~al~~~~g~Ll~~vg~~l---------- 1175 (1431)
+..++..|- .+|.+.+-+.. .++.+|+.+. .|.+..+. ++|.+|+++|-..
T Consensus 186 Nnr~lf~G~---------t~G~V~LrD~~--------s~~~iht~~aHs~siSDfD-v~GNlLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 186 NNRNLFCGD---------TRGTVFLRDPN--------SFETIHTFDAHSGSISDFD-VQGNLLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred cCcEEEeec---------ccceEEeecCC--------cCceeeeeeccccceeeee-ccCCeEEEeecccccccccccch
Confidence 345777775 47777765443 3677777664 66777665 5666666666543
Q ss_pred -EEEEccC-CeeeeeEeec------CCCeeEEEEEEeCCEEEEEeccccEEEEE---EeccccEEEEeeeccCCccEEEE
Q 000548 1176 -ILHKWTG-TELNGIAFYD------APPLYVVSLNIVKNFILLGDIHKSIYFLS---WKEQGAQLNLLAKDFGSLDCFAT 1244 (1431)
Q Consensus 1176 -~v~~~~~-~~L~~~a~~~------~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~---~~~~~~~l~~~arD~~~~~vta~ 1244 (1431)
.||++.. +.|.++.|.. ..|.+.+.+. |.-....+.++. +... ..-..--++....+++.
T Consensus 248 vkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~-------V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~f 318 (1118)
T KOG1275|consen 248 VKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLA-------VTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAF 318 (1118)
T ss_pred hhhhhhhhhhccCCcccccCchhhhhcccccceEE-------EEecccceeeccccccCCC--ccceeEEccCCCcceeE
Confidence 4566653 4466666543 3355544443 333233333332 1100 01111113333446777
Q ss_pred EEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1245 EFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1245 ~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
++-..++- +..+|..|+|.+++
T Consensus 319 DiSsn~~a--lafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 319 DISSNGDA--LAFGDHEGHVNLWA 340 (1118)
T ss_pred EecCCCce--EEEecccCcEeeec
Confidence 75445555 78899999999987
No 166
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=33.61 E-value=7.7e+02 Score=28.15 Aligned_cols=184 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEc-cccCeEEEEe
Q 000548 1093 TVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALA-SLQGHLLIAS 1171 (1431)
Q Consensus 1093 s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~-~~~g~Ll~~v 1171 (1431)
++-+|-.. ....+++-|.+-+ .+.+|++.. =|.++.-++..+|..+. .+.|.+++++
T Consensus 54 avW~~Did-----~~s~~liTGSAD~---------t~kLWDv~t--------Gk~la~~k~~~~Vk~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 54 AVWCCDID-----WDSKHLITGSADQ---------TAKLWDVET--------GKQLATWKTNSPVKRVDFSFGGNLILAS 111 (327)
T ss_pred eEEEEEec-----CCcceeeeccccc---------eeEEEEcCC--------CcEEEEeecCCeeEEEeeccCCcEEEEE
Q ss_pred CCe-------EEEEEcc-------CCe-eeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeecc
Q 000548 1172 GPK-------IILHKWT-------GTE-LNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDF 1236 (1431)
Q Consensus 1172 g~~-------l~v~~~~-------~~~-L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~ 1236 (1431)
-.+ |.+|++. .++ ++++-..+. -....-....+.+|+.|+---+|..+ +...++...-+.+.
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-kit~a~Wg~l~~~ii~Ghe~G~is~~--da~~g~~~v~s~~~ 188 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-KITSALWGPLGETIIAGHEDGSISIY--DARTGKELVDSDEE 188 (327)
T ss_pred ehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-ceeeeeecccCCEEEEecCCCcEEEE--EcccCceeeechhh
Q ss_pred CCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEEEEEeeecCCCCCCCCCCCC
Q 000548 1237 GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGS 1316 (1431)
Q Consensus 1237 ~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~ 1316 (1431)
+...++.++|--|... ||.+-++-+-.++. -..|+..-.|..-..||+..-..+..
T Consensus 189 h~~~Ind~q~s~d~T~--FiT~s~Dttakl~D----------~~tl~v~Kty~te~PvN~aaisP~~d------------ 244 (327)
T KOG0643|consen 189 HSSKINDLQFSRDRTY--FITGSKDTTAKLVD----------VRTLEVLKTYTTERPVNTAAISPLLD------------ 244 (327)
T ss_pred hccccccccccCCcce--EEecccCccceeee----------ccceeeEEEeeecccccceecccccc------------
Q ss_pred CCCCceEEEEEcCC
Q 000548 1317 DKTNRFALLFGTLD 1330 (1431)
Q Consensus 1317 ~~~~~~~il~~T~~ 1330 (1431)
+.|+.|+.+
T Consensus 245 -----~VilgGGqe 253 (327)
T KOG0643|consen 245 -----HVILGGGQE 253 (327)
T ss_pred -----eEEecCCce
No 167
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.59 E-value=5.2e+02 Score=32.31 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=89.4
Q ss_pred eEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc--cCeEEEEe-CCeEEEEEccCCee
Q 000548 1109 TLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL--QGHLLIAS-GPKIILHKWTGTEL 1185 (1431)
Q Consensus 1109 ~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~--~g~Ll~~v-g~~l~v~~~~~~~L 1185 (1431)
..++||-+. .+|+|.-... ++..+++.. ++.|+++.-- .++|.+|. +..|.||+....+-
T Consensus 189 n~laValg~----------~vylW~~~s~------~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 189 NVLAVALGQ----------SVYLWSASSG------SVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred CeEEEEecc----------eEEEEecCCC------ceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 467776543 5677776542 366666665 8899998854 34665554 57889999876543
Q ss_pred eeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEE
Q 000548 1186 NGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQ 1265 (1431)
Q Consensus 1186 ~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~ 1265 (1431)
.+.-.... ..+|-+|.-..+.+..|.--..+...-.+..+..+. ---.+...|...++--|+.. +..+..++.++
T Consensus 252 ~~~~~~~h-~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~~--lASGgnDN~~~ 326 (484)
T KOG0305|consen 252 TRTLRGSH-ASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGNQ--LASGGNDNVVF 326 (484)
T ss_pred cccccCCc-CceeEEEeccCceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCCe--eccCCCccceE
Confidence 33222213 457778887778888888777776665543322222 12235567888887566666 77888888898
Q ss_pred EEee
Q 000548 1266 IFYY 1269 (1431)
Q Consensus 1266 vl~~ 1269 (1431)
++..
T Consensus 327 Iwd~ 330 (484)
T KOG0305|consen 327 IWDG 330 (484)
T ss_pred eccC
Confidence 8876
No 168
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=33.59 E-value=67 Score=23.09 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=13.9
Q ss_pred EEEEEecCCeEEEEE
Q 000548 753 YSVVCYESGALEIFD 767 (1431)
Q Consensus 753 ~l~v~~~~g~l~I~s 767 (1431)
|++++++.+-|+||+
T Consensus 13 ~vavaTS~~~lRifs 27 (27)
T PF12341_consen 13 WVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEeCCCeEEecC
Confidence 999999999999985
No 169
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=33.41 E-value=2.3e+02 Score=33.33 Aligned_cols=126 Identities=11% Similarity=0.224 Sum_probs=75.5
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC--CeEEEEEccCCeeee-eE-eecCCCeeEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG--PKIILHKWTGTELNG-IA-FYDAPPLYVVS 1200 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg--~~l~v~~~~~~~L~~-~a-~~~~~~~~i~~ 1200 (1431)
+.+.|.+|+.-... |- -|++....+++. |-.+ +++.+++.+ ..+|.|++.. |.+ .. +.+. -+-|.+
T Consensus 208 sDrsIvLyD~R~~~--Pl--~KVi~~mRTN~I--swnP-eafnF~~a~ED~nlY~~DmR~--l~~p~~v~~dh-vsAV~d 277 (433)
T KOG0268|consen 208 SDRSIVLYDLRQAS--PL--KKVILTMRTNTI--CWNP-EAFNFVAANEDHNLYTYDMRN--LSRPLNVHKDH-VSAVMD 277 (433)
T ss_pred cCCceEEEecccCC--cc--ceeeeeccccce--ecCc-cccceeeccccccceehhhhh--hcccchhhccc-ceeEEE
Confidence 47789999997531 11 133333333432 2224 555554444 5666666642 322 22 2233 344444
Q ss_pred EE--EeCCEEEEEeccccEEEEEEeccccEEEEeeeccC----CccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1201 LN--IVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFG----SLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1201 l~--~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~----~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
+. ..|.-++-|-.-|||-++..+.. -+||.. -..|+|+.+-.|... |+.+-.+||+.+.+
T Consensus 278 VdfsptG~EfvsgsyDksIRIf~~~~~------~SRdiYhtkRMq~V~~Vk~S~Dsky--i~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 278 VDFSPTGQEFVSGSYDKSIRIFPVNHG------HSRDIYHTKRMQHVFCVKYSMDSKY--IISGSDDGNVRLWK 343 (433)
T ss_pred eccCCCcchhccccccceEEEeecCCC------cchhhhhHhhhheeeEEEEeccccE--EEecCCCcceeeee
Confidence 44 35788899999999999887642 235532 247899998556544 88888899999986
No 170
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=32.88 E-value=8.4e+02 Score=28.35 Aligned_cols=148 Identities=9% Similarity=0.090 Sum_probs=98.5
Q ss_pred EEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeC-CeEEEEEccC-CeeeeeEeecCCCeeEEEEEEeCC
Q 000548 1129 VLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASG-PKIILHKWTG-TELNGIAFYDAPPLYVVSLNIVKN 1206 (1431)
Q Consensus 1129 i~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg-~~l~v~~~~~-~~L~~~a~~~~~~~~i~~l~~~~~ 1206 (1431)
+.++++...+. +....++.....++-+.-+..-+.|..++-+ +-|+|+++.. .+=..+.|+++ --|.-...+-||
T Consensus 63 l~i~ditn~~~--~t~~~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~vsGn 139 (370)
T COG5276 63 LAILDITNVSL--QTHDVLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYVSGN 139 (370)
T ss_pred EeeccccCccc--ccCcceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEecCC
Confidence 34567654221 2235566666667777766655667777766 4688888864 23455777777 667778888899
Q ss_pred EEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEee-CCCCCCCccCceEEEE
Q 000548 1207 FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY-APKMSESWKGQKLLSR 1285 (1431)
Q Consensus 1207 ~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~-~p~~~~s~~~~~L~~~ 1285 (1431)
+.+|.|.-.++-.+.. .++.+=.+.+|=..+-|-+.-. .+.+++ -.+++.++-|.++.. +|.+| ..+
T Consensus 140 ~aYVadlddgfLivdv-sdpssP~lagrya~~~~d~~~v-~ISGn~--AYvA~~d~GL~ivDVSnp~sP--------vli 207 (370)
T COG5276 140 YAYVADLDDGFLIVDV-SDPSSPQLAGRYALPGGDTHDV-AISGNY--AYVAWRDGGLTIVDVSNPHSP--------VLI 207 (370)
T ss_pred EEEEeeccCcEEEEEC-CCCCCceeeeeeccCCCCceeE-EEecCe--EEEEEeCCCeEEEEccCCCCC--------eEE
Confidence 9999999998766544 3455666777766666655333 477777 567899999999875 34433 245
Q ss_pred EEEecC
Q 000548 1286 AEFHVG 1291 (1431)
Q Consensus 1286 ~~fhlg 1291 (1431)
++++.|
T Consensus 208 ~~~n~g 213 (370)
T COG5276 208 GSYNTG 213 (370)
T ss_pred EEEecC
Confidence 555555
No 171
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=32.19 E-value=7e+02 Score=27.24 Aligned_cols=98 Identities=8% Similarity=0.085 Sum_probs=57.1
Q ss_pred ccCeEEEE-eCCeEEEEEccCCeee-eeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEe-eecc---
Q 000548 1163 LQGHLLIA-SGPKIILHKWTGTELN-GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLL-AKDF--- 1236 (1431)
Q Consensus 1163 ~~g~Ll~~-vg~~l~v~~~~~~~L~-~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~-arD~--- 1236 (1431)
.+++++++ ....|+.++....+++ +... .. +.... ....++.|+++..-. .+..++...+++.-- ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~-~~~~~~~v~v~~~~~--~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA-PVVDGGRVYVGTSDG--SLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG-EEEETTEEEEEETTS--EEEEEETTTSCEEEEEEE-SSCT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce-eeeccccccccccee--eeEecccCCcceeeeeccccccc
Confidence 57788887 5678999998655443 3333 22 21111 355788888888444 566677555555444 2322
Q ss_pred CCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1237 GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1237 ~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
..... ...+.++++. ++++...|.|+.+.
T Consensus 110 ~~~~~-~~~~~~~~~~--~~~~~~~g~l~~~d 138 (238)
T PF13360_consen 110 AGVRS-SSSPAVDGDR--LYVGTSSGKLVALD 138 (238)
T ss_dssp CSTB---SEEEEETTE--EEEEETCSEEEEEE
T ss_pred ccccc-ccCceEecCE--EEEEeccCcEEEEe
Confidence 22222 2222356677 67778889988875
No 172
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.07 E-value=1.2e+03 Score=29.85 Aligned_cols=156 Identities=13% Similarity=0.182 Sum_probs=87.9
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEee-cCceEEEccc--cCeEEEEeC-CeEEEEEccCCeeeeeEeecCCCeeEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKEL-KGAISALASL--QGHLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVS 1200 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~-~g~V~al~~~--~g~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~~ 1200 (1431)
..|++.+|.... -.++-+.++ +-||.+..-+ ++.+++|.- -.|+||+++.-+- -+.|-.. +-||-+
T Consensus 33 ynG~V~IWnyet--------qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-V~~FeAH-~DyIR~ 102 (794)
T KOG0276|consen 33 YNGDVQIWNYET--------QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-VKTFEAH-SDYIRS 102 (794)
T ss_pred ecCeeEEEeccc--------ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee-eEEeecc-ccceee
Confidence 478999998864 233444444 3455553322 456887765 5899999975431 1334444 778888
Q ss_pred EEEeCC--EEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecC-CeeEEEEEeCCCcEEEEeeCCCCCC-C
Q 000548 1201 LNIVKN--FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDG-STLSLVVSDEQKNIQIFYYAPKMSE-S 1276 (1431)
Q Consensus 1201 l~~~~~--~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~-~~l~~i~~D~~gNl~vl~~~p~~~~-s 1276 (1431)
|.++.. +++-+-=-.-|-+..|+.+ ..... --.-+.+.|+.+.|-..+ ++ |+.+--++-+-+.++-...+. .
T Consensus 103 iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~q-tfeGH~HyVMqv~fnPkD~nt--FaS~sLDrTVKVWslgs~~~nfT 178 (794)
T KOG0276|consen 103 IAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQ-TFEGHEHYVMQVAFNPKDPNT--FASASLDRTVKVWSLGSPHPNFT 178 (794)
T ss_pred eeecCCCCeEEecCCccEEEEeeccCc-eeeee-EEcCcceEEEEEEecCCCccc--eeeeeccccEEEEEcCCCCCcee
Confidence 888753 5554322223445555321 12111 123356788888876544 45 777777888888876433332 1
Q ss_pred ccCc--eEEEEEEEecCcce
Q 000548 1277 WKGQ--KLLSRAEFHVGAHV 1294 (1431)
Q Consensus 1277 ~~~~--~L~~~~~fhlg~~v 1294 (1431)
.+|+ -..++.-|+-||.+
T Consensus 179 l~gHekGVN~Vdyy~~gdkp 198 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKP 198 (794)
T ss_pred eeccccCcceEEeccCCCcc
Confidence 1111 14455566666543
No 173
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=31.73 E-value=1e+02 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=24.6
Q ss_pred eEEEEEec--CeEEEEEcCCCCccCCCcceEEeeCCCcccEEEEe
Q 000548 968 GFIYVTSQ--GILKICQLPSGSTYDNYWPVQKIPLKATPHQITYF 1010 (1431)
Q Consensus 968 g~i~~~~~--~~L~I~~l~~~~~~d~~~~ir~i~L~~tprki~y~ 1010 (1431)
..+|++.. +.+.+ ++.. +...+++++++..|+.|+++
T Consensus 4 ~~lyv~~~~~~~v~~--id~~----~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSGSNTVSV--IDTA----TNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CEEEEEeCCCCEEEE--EECC----CCeEEEEEECCCCCceEEeC
Confidence 35666553 44444 4432 25688999999999999874
No 174
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.09 E-value=5.7e+02 Score=30.81 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=83.9
Q ss_pred eeEEEEEEeecCCCCCccEEEEEEEeecCceEEEcc-ccC-eEEEEeC-CeEEEEEccCCeeeeeE----eecCCCeeEE
Q 000548 1127 GRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQG-HLLIASG-PKIILHKWTGTELNGIA----FYDAPPLYVV 1199 (1431)
Q Consensus 1127 Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~-~~g-~Ll~~vg-~~l~v~~~~~~~L~~~a----~~~~~~~~i~ 1199 (1431)
+.|..|++-. -..+.+.+.-|.|+++.- ++| .|+.+.- ..+-++++..++..... |...--..-+
T Consensus 322 kkvRfwD~Rs--------~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 322 KKVRFWDIRS--------ADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred cceEEEeccC--------CceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 3477787743 233556788899999985 455 4666643 56778888776544322 2222011222
Q ss_pred EEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCc-cEEEEEEEecCCeeEEEEEeCCCcEEE
Q 000548 1200 SLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSL-DCFATEFLIDGSTLSLVVSDEQKNIQI 1266 (1431)
Q Consensus 1200 ~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~-~vta~~fl~d~~~l~~i~~D~~gNl~v 1266 (1431)
.++..+.|++.|-+-.||++... ...+++.+.+-.... .++++.|-..++. ++.+|+++-..+
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v--~tgKlE~~l~~s~s~~aI~s~~W~~sG~~--Llsadk~~~v~l 457 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSV--FTGKLEKVLSLSTSNAAITSLSWNPSGSG--LLSADKQKAVTL 457 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEc--cCceEEEEeccCCCCcceEEEEEcCCCch--hhcccCCcceEe
Confidence 34556789999999999988754 467888877766555 7999997555555 788898765544
No 175
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.79 E-value=1.3e+02 Score=35.82 Aligned_cols=90 Identities=22% Similarity=0.265 Sum_probs=51.8
Q ss_pred EEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCcc
Q 000548 1065 VRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNL 1144 (1431)
Q Consensus 1065 v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~ 1144 (1431)
+.++|. .+.++...|.-+.+-...-..-+.|. ...+|++-|. +.|++++|++.. .|
T Consensus 365 l~viDl----Rt~eI~~~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS---------~dgsv~iW~v~t------gK 420 (459)
T KOG0288|consen 365 LKVIDL----RTKEIRQTFSAEGFKCASDWTRVVFS-----PDGSYVAAGS---------ADGSVYIWSVFT------GK 420 (459)
T ss_pred eeeeec----ccccEEEEeeccccccccccceeEEC-----CCCceeeecc---------CCCcEEEEEccC------ce
Confidence 345554 35566555543333322223334453 3568999998 589999999986 36
Q ss_pred EEEEEEEeecC-ceEEEccc-cC-eEEEEeC-CeEEEE
Q 000548 1145 VTEVYSKELKG-AISALASL-QG-HLLIASG-PKIILH 1178 (1431)
Q Consensus 1145 l~lv~~~~~~g-~V~al~~~-~g-~Ll~~vg-~~l~v~ 1178 (1431)
++.+.+..... +|+++.-- .| +|+++-. ..+.+|
T Consensus 421 lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 421 LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 76666666554 77777622 23 4555543 334444
No 176
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=30.55 E-value=1.3e+03 Score=29.70 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=51.8
Q ss_pred eeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEE
Q 000548 1081 ATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISAL 1160 (1431)
Q Consensus 1081 ~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al 1160 (1431)
..+.|+..-.++|++.+.+. ..+++.|+ ..|.+.+|++......+...+. .+....+.+|+++
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~-------p~ll~gG~---------y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFD-------PNLLAGGC---------YNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEecCCceeEEEeccCC-------cceEEeec---------cCceEEEEEccCCCCCCCcccc-cccccCCcCeEEE
Confidence 45666777788888887763 34666666 4899999999764322111111 2234456788887
Q ss_pred ccccC-----eEEEEeCCeEEEEEcc
Q 000548 1161 ASLQG-----HLLIASGPKIILHKWT 1181 (1431)
Q Consensus 1161 ~~~~g-----~Ll~~vg~~l~v~~~~ 1181 (1431)
+..+. .+-.+.-.+|..|+.+
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~ 323 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTD 323 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeecc
Confidence 75532 3445556778877765
No 177
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.04 E-value=1e+03 Score=28.40 Aligned_cols=68 Identities=19% Similarity=0.390 Sum_probs=45.8
Q ss_pred CEEEEEEeCCcEEEEEecCCCceEEeecCcccccCCCceEEEEeeccCCCCcccccccccccccCCccccccCCCCCCCC
Q 000548 669 PYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLD 748 (1431)
Q Consensus 669 ~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1431)
+++.....|+.|.+..+....+.+.+.. -++.|..+++.
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~g------hdnwVr~~af~----------------------------------- 343 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLVG------HDNWVRGVAFS----------------------------------- 343 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEec------ccceeeeeEEc-----------------------------------
Confidence 3555566688888877654444444332 26777777651
Q ss_pred CCcEEEEEEecCCeEEEEECCCCceeEEe
Q 000548 749 QGDIYSVVCYESGALEIFDVPNFNCVFTV 777 (1431)
Q Consensus 749 ~~~~~l~v~~~~g~l~I~sLp~~~~v~~~ 777 (1431)
....|++-|.+|++|+||++...+++...
T Consensus 344 p~Gkyi~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 344 PGGKYILSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred CCCeEEEEEecCCcEEEEEeccceeeecc
Confidence 11338888999999999999998875543
No 178
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.78 E-value=1.3e+03 Score=29.55 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=35.9
Q ss_pred EEccccCeEEE-EeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEec
Q 000548 1159 ALASLQGHLLI-ASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKE 1224 (1431)
Q Consensus 1159 al~~~~g~Ll~-~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~ 1224 (1431)
+..-|.|.|+. .....+.+|+|+..+|++.=....=+.|... .|.+++++ .-.|..+++|+.
T Consensus 429 ~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~d---~g~lVai~-~d~Sfyil~~n~ 491 (794)
T KOG0276|consen 429 AEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTSKHVYWSD---NGELVAIA-GDDSFYILKFNA 491 (794)
T ss_pred eeeecCCceEEEEeCCeEEEEEcccceEEEEEeeccceeEEec---CCCEEEEE-ecCceeEEEecH
Confidence 33446777764 4557899999999988774332110222211 22343332 236788999975
No 179
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=29.20 E-value=94 Score=35.30 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=36.4
Q ss_pred eEEEEeCCCCEEEEEEEEcCeeeeeEEEEec-----CCCccccceEEecCCeEEEEeecCCeeEEEEe
Q 000548 376 VALLSTKTGDLVLLTVVYDGRVVQRLDLSKT-----NPSVLTSDITTIGNSLFFLGSRLGDSLLVQFT 438 (1431)
Q Consensus 376 ~~Ll~~~~G~l~~l~l~~dg~~V~~l~l~~~-----~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~ 438 (1431)
.++|++++..|. .+..+|+.++.+.|..- ...+.|..|+.-.+|.|||-|| .| .+|+|.
T Consensus 185 lliLS~es~~l~--~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pN-lfy~f~ 248 (248)
T PF06977_consen 185 LLILSDESRLLL--ELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PN-LFYRFE 248 (248)
T ss_dssp EEEEETTTTEEE--EE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TT-EEEEEE
T ss_pred EEEEECCCCeEE--EECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-Cc-eEEEeC
Confidence 567777777664 44467887777877752 4567899999999999999999 44 777763
No 180
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=29.11 E-value=8.7e+02 Score=29.39 Aligned_cols=99 Identities=7% Similarity=0.119 Sum_probs=52.8
Q ss_pred ccCeEEEEe-CCeEEEEEccCCeee-eeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCcc
Q 000548 1163 LQGHLLIAS-GPKIILHKWTGTELN-GIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLD 1240 (1431)
Q Consensus 1163 ~~g~Ll~~v-g~~l~v~~~~~~~L~-~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~ 1240 (1431)
.+|+|+++. ..+|+.++....+.+ +...... ....+..+.+++|++||.-.-+.. ++...+++..--+ .....
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~sp~v~~g~l~v~~~~G~l~~--ld~~tG~~~~~~~-~~~~~ 367 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--RLLTAPVLYNGYLVVGDSEGYLHW--INREDGRFVAQQK-VDSSG 367 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCC--CcccCCEEECCEEEEEeCCCEEEE--EECCCCCEEEEEE-cCCCc
Confidence 456665544 456777777544321 1111111 112233446899999987665544 4655555432221 11122
Q ss_pred EEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1241 CFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1241 vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+.+.- ++.++. +++++.+|.|+.++.
T Consensus 368 ~~s~P-~~~~~~--l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 FLSEP-VVADDK--LLIQARDGTVYAITR 393 (394)
T ss_pred ceeCC-EEECCE--EEEEeCCceEEEEeC
Confidence 33322 244567 677899999999874
No 181
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=28.82 E-value=9.7e+02 Score=27.79 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=49.2
Q ss_pred CeEEEEEccCCeeeee---EeecCCCeeEE--EEE-EeCC-EEEEEeccccEEEEEEeccccEEEEeeeccCCccE---E
Q 000548 1173 PKIILHKWTGTELNGI---AFYDAPPLYVV--SLN-IVKN-FILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDC---F 1242 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~---a~~~~~~~~i~--~l~-~~~~-~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~v---t 1242 (1431)
.++++|.+++.++.+. .-.++-..+.. ++. +.++ .++..|+.-.|.+++-++......+-.=+.....+ .
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 4678888887665551 11111011111 111 2355 44567788889998877655444333223333333 3
Q ss_pred EEEEEecCCeeEEEEEeCCCcEEEE
Q 000548 1243 ATEFLIDGSTLSLVVSDEQKNIQIF 1267 (1431)
Q Consensus 1243 a~~fl~d~~~l~~i~~D~~gNl~vl 1267 (1431)
+.++-.-.. .++++|..|.+.+.
T Consensus 126 slD~~~~~~--~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 126 SLDISTSGT--KIFVSDSRGSISGV 148 (339)
T ss_pred EEEeeccCc--eEEEEcCCCcEEEE
Confidence 444312223 38999999999844
No 182
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.75 E-value=5e+02 Score=29.48 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=46.5
Q ss_pred eeeecceeEEEeeCceEEEEeCCCCEEEEEEEEcCeeeeeEEEEecCCCccccceEEecCCeEEEEeecCCeeEEEEee
Q 000548 361 SVELDAAHATWLQNDVALLSTKTGDLVLLTVVYDGRVVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTC 439 (1431)
Q Consensus 361 ~~~ld~~~~~~~~~~~~Ll~~~~G~l~~l~l~~dg~~V~~l~l~~~~~~~~~s~l~~l~~g~lFvgS~~GDS~L~~~~~ 439 (1431)
..+++++.. +-.+++.|+-.+|.||.|.+.. |....... -.++ .-.+..+-.+.|+++.||+-|+-+-+-...
T Consensus 52 g~RiE~sa~--vvgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~--~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 52 GVRIECSAI--VVGDFVVLGCYSGGLYFLCVKT-GSQIWNFV--ILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred CceeeeeeE--EECCEEEEEEccCcEEEEEecc-hhheeeee--ehhh-hccceEEcCCCceEEEecCCCcEEEecccc
Confidence 456676542 2456799999999999999865 32222221 1222 224455667899999999988855544433
No 183
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=28.57 E-value=1.4e+03 Score=29.51 Aligned_cols=166 Identities=14% Similarity=0.163 Sum_probs=91.5
Q ss_pred EEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCcc
Q 000548 1065 VRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNL 1144 (1431)
Q Consensus 1065 v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~ 1144 (1431)
|.+.++. .+|-..-.+..+++-.+.+++.+ + ..+.+-+|- .|.|.-|++..
T Consensus 49 IEiwN~~---~~w~~~~vi~g~~drsIE~L~W~--e------~~RLFS~g~----------sg~i~EwDl~~-------- 99 (691)
T KOG2048|consen 49 IEIWNLS---NNWFLEPVIHGPEDRSIESLAWA--E------GGRLFSSGL----------SGSITEWDLHT-------- 99 (691)
T ss_pred EEEEccC---CCceeeEEEecCCCCceeeEEEc--c------CCeEEeecC----------CceEEEEeccc--------
Confidence 3444442 36776667778888888888766 1 335666664 67887777753
Q ss_pred EEEEEEEee-cCceEEEccc--cCeEEEEeCC-eEEEEEccCC-------------eeeeeEeecCCCeeEEEEEEeCCE
Q 000548 1145 VTEVYSKEL-KGAISALASL--QGHLLIASGP-KIILHKWTGT-------------ELNGIAFYDAPPLYVVSLNIVKNF 1207 (1431)
Q Consensus 1145 l~lv~~~~~-~g~V~al~~~--~g~Ll~~vg~-~l~v~~~~~~-------------~L~~~a~~~~~~~~i~~l~~~~~~ 1207 (1431)
++.++..+. -|++-+++.- +..+.++.-. -++.+..+-+ +++-++|... ..-+ ..-+.+..
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-~~~i-~~Gs~Dg~ 177 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-GTKI-AGGSIDGV 177 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC-ccEE-EecccCce
Confidence 555555554 4566666633 3445555322 2222333322 3344444333 1111 11123456
Q ss_pred EEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEe
Q 000548 1208 ILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFY 1268 (1431)
Q Consensus 1208 IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~ 1268 (1431)
|-++|+.++=++..... ++.-+.+ ..+.-|-++.|| .+++ ++.+|..|-+.+..
T Consensus 178 Iriwd~~~~~t~~~~~~---~~d~l~k-~~~~iVWSv~~L-rd~t--I~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITM---QLDRLSK-REPTIVWSVLFL-RDST--IASGDSAGTVTFWD 231 (691)
T ss_pred EEEEEcCCCceEEEeee---ccccccc-CCceEEEEEEEe-ecCc--EEEecCCceEEEEc
Confidence 77888777655542221 2222222 123335578875 6678 89999999998873
No 184
>PRK03629 tolB translocation protein TolB; Provisional
Probab=27.75 E-value=6.2e+02 Score=31.21 Aligned_cols=95 Identities=8% Similarity=0.092 Sum_probs=50.1
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCC
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1251 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvG-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1251 (1431)
..|+++++...+......... .......+..+.+|++. +.-....++.++.+.+++..+.... ..++...|-.|++
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~-~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~--~~~~~~~wSPDG~ 299 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR--SNNTEPTWFPDSQ 299 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC-CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC--CCcCceEECCCCC
Confidence 467788876554433333322 22222344456666653 3222233445565556666655432 2355666656777
Q ss_pred eeEEEEEeCCCcEEEEeeCC
Q 000548 1252 TLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1252 ~l~~i~~D~~gNl~vl~~~p 1271 (1431)
.| +.++|+.|+..++.++.
T Consensus 300 ~I-~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 300 NL-AYTSDQAGRPQVYKVNI 318 (429)
T ss_pred EE-EEEeCCCCCceEEEEEC
Confidence 76 45677776655555544
No 185
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=26.96 E-value=1.2e+03 Score=28.21 Aligned_cols=135 Identities=17% Similarity=0.151 Sum_probs=68.9
Q ss_pred cCeEEEEe-CCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEE
Q 000548 1164 QGHLLIAS-GPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCF 1242 (1431)
Q Consensus 1164 ~g~Ll~~v-g~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vt 1242 (1431)
+|.++++. +..++.++....+.+=...... . ..+...+++|++++.-..+..+ +.+.++..--..........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~-~~~~~~~~~vy~~~~~g~l~al--d~~tG~~~W~~~~~~~~~~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS---V-NDFAVDGGRIYLVDQNDRVYAL--DTRGGVELWSQSDLLHRLLT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC---c-cCcEEECCEEEEEcCCCeEEEE--ECCCCcEEEcccccCCCccc
Confidence 56665443 4577777776543321111111 1 1344568889988866654444 54444432211111112222
Q ss_pred EEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecC-cceeEEEEEeeecCCCCCCCCCCCCCCCCc
Q 000548 1243 ATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVG-AHVTKFLRLQMLATSSDRTGAAPGSDKTNR 1321 (1431)
Q Consensus 1243 a~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg-~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~ 1321 (1431)
+. .+.++. ++++|.+|.|+++. +.+ |+ ....++++ +.+.+ ..... .
T Consensus 330 sp--~v~~g~--l~v~~~~G~l~~ld--~~t-----G~---~~~~~~~~~~~~~s---~P~~~----------------~ 376 (394)
T PRK11138 330 AP--VLYNGY--LVVGDSEGYLHWIN--RED-----GR---FVAQQKVDSSGFLS---EPVVA----------------D 376 (394)
T ss_pred CC--EEECCE--EEEEeCCCEEEEEE--CCC-----CC---EEEEEEcCCCccee---CCEEE----------------C
Confidence 22 244567 56789999999875 322 32 23344443 22211 00111 2
Q ss_pred eEEEEEcCCCcEEEEE
Q 000548 1322 FALLFGTLDGSIGCIA 1337 (1431)
Q Consensus 1322 ~~il~~T~~GsIg~l~ 1337 (1431)
..++.+|.+|.+.+|.
T Consensus 377 ~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 377 DKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEeCCceEEEEe
Confidence 4688899999998875
No 186
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=26.47 E-value=5.1e+02 Score=30.64 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=84.3
Q ss_pred ceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccC-eEEEEeC-CeEEEEEccCCeeeeeEeecCCCeeEEEEEE
Q 000548 1126 RGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQG-HLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLNI 1203 (1431)
Q Consensus 1126 ~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g-~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~ 1203 (1431)
.+.|.+|++... -..+.-+..+-.|.|++.--. +++|+.+ ..+.-|++.+++++.- +-.. ...|.+|.+
T Consensus 298 D~tvrlWDl~ag-------kt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n-lsgh-~~iintl~~ 368 (460)
T KOG0285|consen 298 DSTVRLWDLRAG-------KTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN-LSGH-NAIINTLSV 368 (460)
T ss_pred CceEEEeeeccC-------ceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc-cccc-cceeeeeee
Confidence 578888988753 122333556777888885433 4444444 5677788877664433 2122 335667776
Q ss_pred e-CCEEEEEeccccEEEEEEeccccEEEEeeecc------CCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCC
Q 000548 1204 V-KNFILLGDIHKSIYFLSWKEQGAQLNLLAKDF------GSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKM 1273 (1431)
Q Consensus 1204 ~-~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~------~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~ 1273 (1431)
. ++.+++|-=--+++|..|+.-. .+..+.-=. .-..++|++| |...+-+|.+..+.+|-+++-+.++
T Consensus 369 nsD~v~~~G~dng~~~fwdwksg~-nyQ~~~t~vqpGSl~sEagI~as~f--Dktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 369 NSDGVLVSGGDNGSIMFWDWKSGH-NYQRGQTIVQPGSLESEAGIFASCF--DKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ccCceEEEcCCceEEEEEecCcCc-ccccccccccCCccccccceeEEee--cccCceEEeccCCcceEEEeccccc
Confidence 4 5677788777888898886432 222221111 2245788886 5544448999999999999876554
No 187
>PRK04922 tolB translocation protein TolB; Provisional
Probab=26.10 E-value=6.4e+02 Score=31.07 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=51.6
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEE-eccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCC
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLG-DIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1251 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvG-D~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1251 (1431)
..|++|++...+....+.... .......+..+++|++. +.-..-.++.++...+++..+..+.. ..+...|..|++
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~spDG~ 304 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFG--IDTEPTWAPDGK 304 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCC--CccceEECCCCC
Confidence 468888887655444443333 22222344456777653 43334455556666666666654422 234566656777
Q ss_pred eeEEEEEeCCCcEEEEeeC
Q 000548 1252 TLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1252 ~l~~i~~D~~gNl~vl~~~ 1270 (1431)
.| +.++|+.|+..++.++
T Consensus 305 ~l-~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 305 SI-YFTSDRGGRPQIYRVA 322 (433)
T ss_pred EE-EEEECCCCCceEEEEE
Confidence 76 4567887764444443
No 188
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.08 E-value=3.7e+02 Score=37.11 Aligned_cols=109 Identities=14% Similarity=0.353 Sum_probs=60.4
Q ss_pred cCeEEEEeCCeEEEEEccC-CeeeeeEeecCCCeeEEEEEE-----------eCCEEEEEeccccEEEE-EEeccccEEE
Q 000548 1164 QGHLLIASGPKIILHKWTG-TELNGIAFYDAPPLYVVSLNI-----------VKNFILLGDIHKSIYFL-SWKEQGAQLN 1230 (1431)
Q Consensus 1164 ~g~Ll~~vg~~l~v~~~~~-~~L~~~a~~~~~~~~i~~l~~-----------~~~~IlvGD~~~Sv~ll-~~~~~~~~l~ 1230 (1431)
=|+..+.++++|++|+++. .++ ++++.+...|..+.. +...++|+..++=+-+- .|++..+.+.
T Consensus 90 I~RaWiTiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 90 IGRAWITIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred hcceEEEeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 3789999999999999986 222 222221112222221 24567777766633222 2233333333
Q ss_pred Eeeec----cCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCc
Q 000548 1231 LLAKD----FGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQ 1280 (1431)
Q Consensus 1231 ~~arD----~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~ 1280 (1431)
.+... ..+..|.++.. .+++.+ ..+-++||||=+.|..+ ++|-++
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~-t~nGRI--F~~G~dg~lyEl~Yq~~--~gWf~~ 215 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITY-TENGRI--FFAGRDGNLYELVYQAE--DGWFGS 215 (1311)
T ss_pred ccccceeeecCCceEEEEEe-ccCCcE--EEeecCCCEEEEEEecc--Cchhhc
Confidence 33333 23555677763 677784 44556669998888654 356544
No 189
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=25.71 E-value=8.6e+02 Score=29.22 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc----cCeEEEEeCCeEEEE
Q 000548 1103 TTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL----QGHLLIASGPKIILH 1178 (1431)
Q Consensus 1103 ~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~----~g~Ll~~vg~~l~v~ 1178 (1431)
.+.+...+++|+| ..-+.++|++..++. ..+++-...+.-..+++... ...++-..|.-..+.
T Consensus 69 ~~s~~~~llAv~~---------~~K~~~~f~~~~~~~----~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 69 LTSDSGRLVAVAT---------SSKQRAVFDYRENPK----GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFD 135 (390)
T ss_pred ccCCCceEEEEEe---------CCCceEEEEEecCCC----cceeeeEeecccCcceeeeeeccceEEEEeecCCceeee
Q ss_pred EccCCeeeeeEeecCCCeeEEEEEEeCC--EEEEEeccccEEEEEEeccccEEEEeeecc-CCccEEEEEEEecCCeeEE
Q 000548 1179 KWTGTELNGIAFYDAPPLYVVSLNIVKN--FILLGDIHKSIYFLSWKEQGAQLNLLAKDF-GSLDCFATEFLIDGSTLSL 1255 (1431)
Q Consensus 1179 ~~~~~~L~~~a~~~~~~~~i~~l~~~~~--~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~-~~~~vta~~fl~d~~~l~~ 1255 (1431)
-|...+-...-.+.. -..++.+.+..| +|+.+|--+=|.+.+| ++.+..=+==. +.-.|...+ +.++.. +
T Consensus 136 i~s~~~~~~~~~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~y---pa~f~IesfclGH~eFVS~is-l~~~~~--L 208 (390)
T KOG3914|consen 136 ILSADSGRCEPILGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRY---PATFVIESFCLGHKEFVSTIS-LTDNYL--L 208 (390)
T ss_pred eecccccCcchhhhh-hhhhheeeecCCCCEEEEecCCceEEEEec---CcccchhhhccccHhheeeee-eccCce--e
Q ss_pred EEEeCCCcEEEEee
Q 000548 1256 VVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1256 i~~D~~gNl~vl~~ 1269 (1431)
+.+--+++|++..|
T Consensus 209 lS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDI 222 (390)
T ss_pred eecCCCCcEEEEec
No 190
>PRK02889 tolB translocation protein TolB; Provisional
Probab=25.36 E-value=5.3e+02 Score=31.82 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=54.5
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCC
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1251 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1251 (1431)
..|++|++...+..+...... .......+..+++|++ .+-.....++.++.....+..+..+. -..+...|-.|+.
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~~~~~~~wSpDG~ 296 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS--GIDTEPFFSPDGR 296 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCC--CCCcCeEEcCCCC
Confidence 468889987665555443333 2222233445667765 45445566776766555555554432 2334556666777
Q ss_pred eeEEEEEeCCCcEEEEeeCC
Q 000548 1252 TLSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1252 ~l~~i~~D~~gNl~vl~~~p 1271 (1431)
.| +.++|+.|+..++.++.
T Consensus 297 ~l-~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 297 SI-YFTSDRGGAPQIYRMPA 315 (427)
T ss_pred EE-EEEecCCCCcEEEEEEC
Confidence 76 45688877777766653
No 191
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.31 E-value=1.5e+03 Score=29.01 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=81.0
Q ss_pred ecCceEEEcc-cc-CeEEEEeC--CeEEEEEccCC--eeee------eEeec-CCCeeEEEEEEeCC--EEEEEeccccE
Q 000548 1153 LKGAISALAS-LQ-GHLLIASG--PKIILHKWTGT--ELNG------IAFYD-APPLYVVSLNIVKN--FILLGDIHKSI 1217 (1431)
Q Consensus 1153 ~~g~V~al~~-~~-g~Ll~~vg--~~l~v~~~~~~--~L~~------~a~~~-~~~~~i~~l~~~~~--~IlvGD~~~Sv 1217 (1431)
.+.-|.||+. .+ ..++|+-| .+|++|++... +|+. .+..- .--..|-++..-.+ .|+-|+..+=+
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 4556666665 33 45555444 79999999743 2221 11111 10112334444333 66678888887
Q ss_pred EEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000548 1218 YFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1297 (1431)
Q Consensus 1218 ~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~ 1297 (1431)
-|+.-+.-. +++.+- -+.-.|-++-..-|+.+ ++.+-.+|-|.+..+..+ | +.+.|++.+.. .
T Consensus 196 r~wDprt~~-kimkLr--GHTdNVr~ll~~dDGt~--~ls~sSDgtIrlWdLgqQ--------r--Cl~T~~vH~e~--V 258 (735)
T KOG0308|consen 196 RLWDPRTCK-KIMKLR--GHTDNVRVLLVNDDGTR--LLSASSDGTIRLWDLGQQ--------R--CLATYIVHKEG--V 258 (735)
T ss_pred EEecccccc-ceeeee--ccccceEEEEEcCCCCe--EeecCCCceEEeeecccc--------c--eeeeEEeccCc--e
Confidence 776333222 232222 23445666652223445 899999999999875432 2 44446665544 1
Q ss_pred EEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEEEEeC
Q 000548 1298 LRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGCIAPL 1339 (1431)
Q Consensus 1298 ~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~l~pl 1339 (1431)
....+-+ .-..+++|..+|-|. ..++
T Consensus 259 WaL~~~~---------------sf~~vYsG~rd~~i~-~Tdl 284 (735)
T KOG0308|consen 259 WALQSSP---------------SFTHVYSGGRDGNIY-RTDL 284 (735)
T ss_pred EEEeeCC---------------CcceEEecCCCCcEE-eccc
Confidence 1111111 124567777888774 3555
No 192
>KOG4328 consensus WD40 protein [Function unknown]
Probab=25.20 E-value=3.7e+02 Score=32.70 Aligned_cols=113 Identities=16% Similarity=0.218 Sum_probs=56.8
Q ss_pred ecCceEEEc--cccCeEEEEeC---CeEEEEEcc--CCeeee-eEeecCCCeeEEEEEEeC---CEEEEEeccccEEEEE
Q 000548 1153 LKGAISALA--SLQGHLLIASG---PKIILHKWT--GTELNG-IAFYDAPPLYVVSLNIVK---NFILLGDIHKSIYFLS 1221 (1431)
Q Consensus 1153 ~~g~V~al~--~~~g~Ll~~vg---~~l~v~~~~--~~~L~~-~a~~~~~~~~i~~l~~~~---~~IlvGD~~~Sv~ll~ 1221 (1431)
+.|.|+++. +...+=++++| .+|.+|+++ ++.-.+ +-|... ...|.+|.... +.|+..-.--.+-+..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEecCCChhheeeeccCceeeeee
Confidence 455666655 33442233344 568899995 221111 222222 33344554431 2333332222233322
Q ss_pred EeccccEEEEeee-ccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeC
Q 000548 1222 WKEQGAQLNLLAK-DFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1222 ~~~~~~~l~~~ar-D~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~ 1270 (1431)
| +.+.+.++.+ |....|...++|.-++.. ++.+|..||+.++...
T Consensus 264 ~--~~~i~e~v~s~~~d~~~fs~~d~~~e~~~--vl~~~~~G~f~~iD~R 309 (498)
T KOG4328|consen 264 F--EGNISEEVLSLDTDNIWFSSLDFSAESRS--VLFGDNVGNFNVIDLR 309 (498)
T ss_pred e--cchhhHHHhhcCccceeeeeccccCCCcc--EEEeecccceEEEEee
Confidence 2 2334444433 355678889998544444 7889999977776544
No 193
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.89 E-value=7.8e+02 Score=31.69 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=66.2
Q ss_pred ecCceEEEccccC-eEEEEeC-CeEEEEEccCCeeeeeEeecCCCeeEEEEE-EeCCEEEEEecccc-EEEEEEeccccE
Q 000548 1153 LKGAISALASLQG-HLLIASG-PKIILHKWTGTELNGIAFYDAPPLYVVSLN-IVKNFILLGDIHKS-IYFLSWKEQGAQ 1228 (1431)
Q Consensus 1153 ~~g~V~al~~~~g-~Ll~~vg-~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~-~~~~~IlvGD~~~S-v~ll~~~~~~~~ 1228 (1431)
....|.+++.+.+ .++.|.| .-|+.|++++.-|++.--+ ..|+-+|+ ..++.++|..--++ +-++ +.+
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW--~~~--- 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIW--KKD--- 249 (745)
T ss_pred chhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeecc---ceEEEEEEecCCCCeEEEecCCceEEEe--ecC---
Confidence 5678888998876 6776665 5677899977656554333 44666777 45566666544443 3333 221
Q ss_pred EEEeeeccCCc-cEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCC
Q 000548 1229 LNLLAKDFGSL-DCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPK 1272 (1431)
Q Consensus 1229 l~~~arD~~~~-~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~ 1272 (1431)
+.++-=..|. .+-++.+|.+++ |+++-.+|-+++|..++.
T Consensus 250 -e~~q~I~lPttsiWsa~~L~NgD---Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 250 -ECVQVITLPTTSIWSAKVLLNGD---IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -ceEEEEecCccceEEEEEeeCCC---EEEeccCceEEEEEeccc
Confidence 1111111232 455777655654 788999999999987654
No 194
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=24.59 E-value=1.4e+03 Score=28.22 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=51.4
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEE-eecCceEEEccc-cCeEEEE--eCCeEEEEEccCCeeeeeEeecCCCeeEEE
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSK-ELKGAISALASL-QGHLLIA--SGPKIILHKWTGTELNGIAFYDAPPLYVVS 1200 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~-~~~g~V~al~~~-~g~Ll~~--vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~ 1200 (1431)
..+.+.+|++.. .+.+|.. ....|||++.-- +|+.+|. .+..|.+|.....+|.+..--.. .++=++
T Consensus 430 ~dstV~lwdv~~--------gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~ 500 (524)
T KOG0273|consen 430 FDSTVKLWDVES--------GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELC 500 (524)
T ss_pred cCCeEEEEEccC--------CceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC-eEEEEE
Confidence 367889999964 4445554 678899999854 4665554 23578888887766654332222 222222
Q ss_pred EEEeCCEEEEEeccccEEEEEE
Q 000548 1201 LNIVKNFILLGDIHKSIYFLSW 1222 (1431)
Q Consensus 1201 l~~~~~~IlvGD~~~Sv~ll~~ 1222 (1431)
-...||+|.+.=.-.++.++.|
T Consensus 501 Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 501 WNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred EcCCCCEEEEEecCCCceEEEe
Confidence 2334455555444445544443
No 195
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=24.46 E-value=3.2e+02 Score=35.35 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=37.1
Q ss_pred cceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccc-cCeEEEEeC--CeEEEEEccCCeee
Q 000548 1125 ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASL-QGHLLIASG--PKIILHKWTGTELN 1186 (1431)
Q Consensus 1125 ~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~-~g~Ll~~vg--~~l~v~~~~~~~L~ 1186 (1431)
..|.|..|++.. ++..+ +++ ....|||+|+.-- ++-+||.-| .+|.||+|++.+..
T Consensus 197 dsG~lqlWDlRq-p~r~~--~k~---~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 197 DSGYLQLWDLRQ-PDRCE--KKL---TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred CCceEEEeeccC-chhHH--HHh---hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 489999999964 22221 233 4578999999844 444555545 57899999865433
No 196
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=24.06 E-value=1.1e+03 Score=26.97 Aligned_cols=261 Identities=13% Similarity=0.135 Sum_probs=139.9
Q ss_pred cCeEEEEEcCCCCccCCCcceEEee---CCCcccEEEEecCCCeEEEEEeecccccccccccccccccccccccCCCCCc
Q 000548 975 QGILKICQLPSGSTYDNYWPVQKIP---LKATPHQITYFAEKNLYPLIVSVPVLKPLNQVLSLLIDQEVGHQIDNHNLSS 1051 (1431)
Q Consensus 975 ~~~L~I~~l~~~~~~d~~~~ir~i~---L~~tprki~y~~~~~~~~v~~s~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~ 1051 (1431)
+..+||-.... ...|..|++- -.++.|+|++.|..++++.+... .
T Consensus 36 Dk~vriw~~~~----~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD---------------~------------- 83 (312)
T KOG0645|consen 36 DKAVRIWSTSS----GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD---------------A------------- 83 (312)
T ss_pred CceEEEEecCC----CCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---------------c-------------
Confidence 34566655543 1246666654 24689999999999966654221 0
Q ss_pred cccccccccceEEEEEeccCCCCCCceeeeeEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEE
Q 000548 1052 VDLHRTYTVEEYEVRILEPDRAGGPWQTRATIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLL 1131 (1431)
Q Consensus 1052 ~~~~~~~~~~~~~v~lid~~~~~~~~~~~~~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~v 1131 (1431)
.+-+.... +..|+.++.+|=.+||. ++|.+. ....||+-.+- .-.+-+
T Consensus 84 ------------t~~Iw~k~--~~efecv~~lEGHEnEV----K~Vaws-----~sG~~LATCSR---------DKSVWi 131 (312)
T KOG0645|consen 84 ------------TVVIWKKE--DGEFECVATLEGHENEV----KCVAWS-----ASGNYLATCSR---------DKSVWI 131 (312)
T ss_pred ------------eEEEeecC--CCceeEEeeeeccccce----eEEEEc-----CCCCEEEEeeC---------CCeEEE
Confidence 11122211 34778888777777774 556664 23468886652 235778
Q ss_pred EEEeecCCCCCccE-E--EEEEEeecCceEEEccccCeEEEE-eCCeEEEEEcc-CCeeeeeEeecCCCe-eEEEE--EE
Q 000548 1132 FSTGRNADNPQNLV-T--EVYSKELKGAISALASLQGHLLIA-SGPKIILHKWT-GTELNGIAFYDAPPL-YVVSL--NI 1203 (1431)
Q Consensus 1132 f~i~~~~~~~~~~l-~--lv~~~~~~g~V~al~~~~g~Ll~~-vg~~l~v~~~~-~~~L~~~a~~~~~~~-~i~~l--~~ 1203 (1431)
+++.++. +... - .=|..++|+.+- .+-.+.|+.+ --++|.+|+-. +..-.-++.++. +. .|=++ ..
T Consensus 132 We~dedd---Efec~aVL~~HtqDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 132 WEIDEDD---EFECIAVLQEHTQDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDN 205 (312)
T ss_pred EEecCCC---cEEEEeeeccccccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC-ccceEEEEEecC
Confidence 8887531 1211 1 123444444332 2344555533 34899998887 555666666665 33 22233 33
Q ss_pred eCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEE
Q 000548 1204 VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLL 1283 (1431)
Q Consensus 1204 ~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~ 1283 (1431)
.|++++.++--.-|.+.++... --..+.+.++.+.. +.+. |..+-.++-|.+|+-. ..|+...=..+.
T Consensus 206 ~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~~Y~v~W--~~~~--IaS~ggD~~i~lf~~s-~~~d~p~~~l~~ 273 (312)
T KOG0645|consen 206 IGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRALYDVPW--DNGV--IASGGGDDAIRLFKES-DSPDEPSWNLLA 273 (312)
T ss_pred CCceEEEecCCcceEeeeeccC-------cchhcccceEeeee--cccc--eEeccCCCEEEEEEec-CCCCCchHHHHH
Confidence 4668777766666666553210 01335566777764 2334 5555667788888754 222211111111
Q ss_pred EEEEEecCcceeEEEEEeeecCCCCCCCCCCCCCCCCceEEEEEcCCCcEEE
Q 000548 1284 SRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSIGC 1335 (1431)
Q Consensus 1284 ~~~~fhlg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~il~~T~~GsIg~ 1335 (1431)
.+..-| +.-||+.+ ..|+ .+..++.++-+|.+-.
T Consensus 274 ~~~~aH-e~dVNsV~---w~p~--------------~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 274 KKEGAH-EVDVNSVQ---WNPK--------------VSNRLASGGDDGIVNF 307 (312)
T ss_pred hhhccc-ccccceEE---EcCC--------------CCCceeecCCCceEEE
Confidence 122222 34677765 2331 1346777888877643
No 197
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=23.97 E-value=79 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=25.2
Q ss_pred eHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHhh
Q 000548 1388 DCELLSHYEMLPLEEQLEIAHQTGTTRSQILSNLNDLA 1425 (1431)
Q Consensus 1388 DGDlie~fl~L~~~~q~~ia~~l~~~~~~i~~~l~~l~ 1425 (1431)
|-.++..+..=+..--.+||+.+|++...+.+.+..|+
T Consensus 5 D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 5 DRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 44444444443444457899999999999999888774
No 198
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=23.96 E-value=2e+03 Score=29.86 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=68.1
Q ss_pred EEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEEEeecCceEEEccccCeEEEEeCC-eEEE--EEccCCeee
Q 000548 1110 LLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIASGP-KIIL--HKWTGTELN 1186 (1431)
Q Consensus 1110 ~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V~al~~~~g~Ll~~vg~-~l~v--~~~~~~~L~ 1186 (1431)
++..|-+ -+|++|++-+. +..+|.++ +-+.--|+.++....+|++|--+ .++. |+-++++|.
T Consensus 947 ~~LagvG----------~~l~~YdlG~K--~lLRk~e~---k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen 947 RVLAGVG----------RFLRLYDLGKK--KLLRKCEL---KFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred EEEEecc----------cEEEEeeCChH--HHHhhhhh---ccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence 6666653 37889999642 01111111 11567788899888999988654 4554 444567777
Q ss_pred eeEeecCCCeeEEEEEEeC-CEEEEEeccccEEEEEEecc
Q 000548 1187 GIAFYDAPPLYVVSLNIVK-NFILLGDIHKSIYFLSWKEQ 1225 (1431)
Q Consensus 1187 ~~a~~~~~~~~i~~l~~~~-~~IlvGD~~~Sv~ll~~~~~ 1225 (1431)
..|= |.+|-+++.+...+ +.+++||-+--+|+++.-++
T Consensus 1012 ~fad-D~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1012 VFAD-DPVPRHVTALELLDYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred EEeC-CCccceeeEEEEecCCceeeccccCcEEEEECCCc
Confidence 6553 33488999888765 79999999999999987543
No 199
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=23.86 E-value=7.2e+02 Score=28.76 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=77.9
Q ss_pred eEEEEEeeeecCCCcc---cceeEEEEEEeecCCCCCccEEEEEEEeecCce---EEEccccCe---EEEEeCCeEEEEE
Q 000548 1109 TLLAIGTAYVQGEDVA---ARGRVLLFSTGRNADNPQNLVTEVYSKELKGAI---SALASLQGH---LLIASGPKIILHK 1179 (1431)
Q Consensus 1109 ~~ivVGT~~~~~e~~~---~~Gri~vf~i~~~~~~~~~~l~lv~~~~~~g~V---~al~~~~g~---Ll~~vg~~l~v~~ 1179 (1431)
..|++||-.....+.| ..|++++|.+.+....+ +..+..+++.+.- -++-+..|- +.+-.-..|.+|+
T Consensus 25 ~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~---l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r 101 (339)
T KOG0280|consen 25 NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSP---LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYR 101 (339)
T ss_pred ceEEEeeEEecCCCCchheeccceEEEeecccccCc---cceeeeecccccceeeeeeccCCccceeeeccccceEEEEe
Confidence 4999999765433444 46999999997643322 3334444433321 112222332 2232334567777
Q ss_pred ccCC----eeeeeEeecCC-C-eeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeee---ccCCccEEEEEEEecC
Q 000548 1180 WTGT----ELNGIAFYDAP-P-LYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAK---DFGSLDCFATEFLIDG 1250 (1431)
Q Consensus 1180 ~~~~----~L~~~a~~~~~-~-~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~ar---D~~~~~vta~~fl~d~ 1250 (1431)
.+.. .|.+.+..+.- . ..-..+...+.-|+++|..-++..+.+. ...|.-++. .--..|+.... ..+
T Consensus 102 ~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~--~~~ 177 (339)
T KOG0280|consen 102 NDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFS--DKE 177 (339)
T ss_pred eccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecc--cCC
Confidence 7542 24444433320 1 1233455567889999999999966443 222322211 11233554444 233
Q ss_pred CeeEEEEEeCCCcEEEEee
Q 000548 1251 STLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1251 ~~l~~i~~D~~gNl~vl~~ 1269 (1431)
..| +..+-.+|-|..+..
T Consensus 178 pnl-vytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 178 PNL-VYTGGDDGSLSCWDI 195 (339)
T ss_pred Cce-EEecCCCceEEEEEe
Confidence 344 344455666666643
No 200
>PRK04792 tolB translocation protein TolB; Provisional
Probab=23.74 E-value=1.2e+03 Score=28.98 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=47.1
Q ss_pred eEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCe
Q 000548 1174 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGST 1252 (1431)
Q Consensus 1174 ~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~ 1252 (1431)
.|++++++.+++.+...... ...-.+.+..+.+|++ .|.-....++.++.+.++...+..+ ..+.....|-.|++.
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 287 EIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCE
Confidence 58888887766555433221 1111123334566554 5544556777777665555444322 222233455457777
Q ss_pred eEEEEEeCCCcEEEEeeCC
Q 000548 1253 LSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1253 l~~i~~D~~gNl~vl~~~p 1271 (1431)
|++ .+...+...++.++.
T Consensus 364 l~~-~~~~~g~~~I~~~dl 381 (448)
T PRK04792 364 MIM-VNRTNGKFNIARQDL 381 (448)
T ss_pred EEE-EEecCCceEEEEEEC
Confidence 633 444455444544444
No 201
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=23.72 E-value=1.1e+03 Score=29.12 Aligned_cols=117 Identities=11% Similarity=0.098 Sum_probs=59.3
Q ss_pred eCCeEEEEEccCCeeeeeEee-cCCCeeEEEEEEe----CCEEEEEeccccEEEEEEecccc-----EEEEeeeccC---
Q 000548 1171 SGPKIILHKWTGTELNGIAFY-DAPPLYVVSLNIV----KNFILLGDIHKSIYFLSWKEQGA-----QLNLLAKDFG--- 1237 (1431)
Q Consensus 1171 vg~~l~v~~~~~~~L~~~a~~-~~~~~~i~~l~~~----~~~IlvGD~~~Sv~ll~~~~~~~-----~l~~~arD~~--- 1237 (1431)
-|++|.+|+|...+++..=-+ .. ......|... .+.=+||-+..|=.+.-|+.+++ +.+.+..-..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~-g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEE-GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TT-EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCCCcEeeEEecCCC-CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 389999999998876543222 12 2344455543 46888999988755555664332 3333321111
Q ss_pred ------------CccEEEEEEEecCCeeEEEEEeCCCcEEEEee-CCCCCCCccCceEEEEEEEecCcceeEE
Q 000548 1238 ------------SLDCFATEFLIDGSTLSLVVSDEQKNIQIFYY-APKMSESWKGQKLLSRAEFHVGAHVTKF 1297 (1431)
Q Consensus 1238 ------------~~~vta~~fl~d~~~l~~i~~D~~gNl~vl~~-~p~~~~s~~~~~L~~~~~fhlg~~vt~~ 1297 (1431)
|--+|.+..-+|+..| ++..=-.|.++-|.. +|.+ -...++.++|..|.+-
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfL-Yvs~W~~GdvrqYDISDP~~--------Pkl~gqv~lGG~~~~~ 362 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFL-YVSNWLHGDVRQYDISDPFN--------PKLVGQVFLGGSIRKG 362 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EE-EEEETTTTEEEEEE-SSTTS---------EEEEEEE-BTTTT-B
T ss_pred cccccccccccCCCceEeEEEccCCCEE-EEEcccCCcEEEEecCCCCC--------CcEEeEEEECcEeccC
Confidence 2235665533577776 566666899887764 3333 3578899999988554
No 202
>PRK05137 tolB translocation protein TolB; Provisional
Probab=23.13 E-value=9.5e+02 Score=29.58 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=51.5
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCC
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1251 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1251 (1431)
..|++|++...+..+...... ...-...+..++.|++ .+.-....++.++.+.+.+..+.... ...+...|-.|++
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~--~~~~~~~~spDG~ 302 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP--AIDTSPSYSPDGS 302 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCC--CccCceeEcCCCC
Confidence 578899987655444443333 2222344455666654 34333455666666666666665432 2344556656777
Q ss_pred eeEEEEEeCCCc--EEEEe
Q 000548 1252 TLSLVVSDEQKN--IQIFY 1268 (1431)
Q Consensus 1252 ~l~~i~~D~~gN--l~vl~ 1268 (1431)
.| +.++|+.|+ |+++.
T Consensus 303 ~i-~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 303 QI-VFESDRSGSPQLYVMN 320 (435)
T ss_pred EE-EEEECCCCCCeEEEEE
Confidence 76 456777664 55543
No 203
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=23.12 E-value=6.8e+02 Score=28.49 Aligned_cols=92 Identities=20% Similarity=0.097 Sum_probs=51.4
Q ss_pred eEEEEeCCCceEEEE-e-C-CceEEeeccCCCceEEEeeccCCCCCceEEEEEe--cCeEEEEEcCCCCccCCCcceEEe
Q 000548 924 QGFFLSGSRPCWCMV-F-R-ERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTS--QGILKICQLPSGSTYDNYWPVQKI 998 (1431)
Q Consensus 924 ~~Vf~~g~rP~~i~~-~-~-~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~--~~~L~I~~l~~~~~~d~~~~ir~i 998 (1431)
..+|+..+.|-.|+. + + ..++-.|+...+....++- ..++.+++.+ .+.|.+.+++.....-..-.++++
T Consensus 34 ~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y-----~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~ 108 (248)
T PF06977_consen 34 GTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITY-----LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKI 108 (248)
T ss_dssp TEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE------STTEEEEEETTTTEEEEEEE----TT--EEEEEEE
T ss_pred CeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEE-----ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEE
Confidence 457888877767764 2 3 3455555544445555554 3456666666 478999998764322112235677
Q ss_pred eCCCc------ccEEEEecCCCeEEEEE
Q 000548 999 PLKAT------PHQITYFAEKNLYPLIV 1020 (1431)
Q Consensus 999 ~L~~t------prki~y~~~~~~~~v~~ 1020 (1431)
+|+.. ..-|+|.+..+.+.++.
T Consensus 109 ~l~~~~~~N~G~EGla~D~~~~~L~v~k 136 (248)
T PF06977_consen 109 SLGFPNKGNKGFEGLAYDPKTNRLFVAK 136 (248)
T ss_dssp E---S---SS--EEEEEETTTTEEEEEE
T ss_pred ecccccCCCcceEEEEEcCCCCEEEEEe
Confidence 77654 56799999999988874
No 204
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=22.40 E-value=1.4e+03 Score=27.63 Aligned_cols=119 Identities=11% Similarity=0.141 Sum_probs=63.6
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEE---eC----CEEEEEecc---ccEEEEEEeccccEEEEeeeccCC----
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNI---VK----NFILLGDIH---KSIYFLSWKEQGAQLNLLAKDFGS---- 1238 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~---~~----~~IlvGD~~---~Sv~ll~~~~~~~~l~~~arD~~~---- 1238 (1431)
.-|++|+++.++|.....-+ ..-+.+.. .+ +.+++.|-. .+|.+++.+++...|..+..-..|
T Consensus 78 ~GL~VYdL~Gk~lq~~~~Gr---~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~ 154 (381)
T PF02333_consen 78 GGLYVYDLDGKELQSLPVGR---PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATD 154 (381)
T ss_dssp TEEEEEETTS-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-S
T ss_pred CCEEEEcCCCcEEEeecCCC---cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccc
Confidence 46888999888776553211 11112211 11 245667653 579999999877888777542222
Q ss_pred -ccEEEEEEEec--CCeeEEEEEeCCCcEEEEeeCCCCCCCccCceEEEEEEEecCcceeEE
Q 000548 1239 -LDCFATEFLID--GSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKF 1297 (1431)
Q Consensus 1239 -~~vta~~fl~d--~~~l~~i~~D~~gNl~vl~~~p~~~~s~~~~~L~~~~~fhlg~~vt~~ 1297 (1431)
..++.+++.-+ .+.++.++.+++|.+.-+++....... -.-...-+|.++..+-.+
T Consensus 155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~---v~~~lVR~f~~~sQ~EGC 213 (381)
T PF02333_consen 155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK---VSATLVREFKVGSQPEGC 213 (381)
T ss_dssp SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS---EEEEEEEEEE-SS-EEEE
T ss_pred cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc---EeeEEEEEecCCCcceEE
Confidence 34666664322 246789999999999888875432111 122344566776666444
No 205
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.32 E-value=4.9e+02 Score=30.17 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred eEEEEeCCCceEEEE---eCCceEEeeccCCCceEEEeeccCCCCCceEEEEEec--CeEEEEEcCCCCccCCCcceEEe
Q 000548 924 QGFFLSGSRPCWCMV---FRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQ--GILKICQLPSGSTYDNYWPVQKI 998 (1431)
Q Consensus 924 ~~Vf~~g~rP~~i~~---~~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~~--~~L~I~~l~~~~~~d~~~~ir~i 998 (1431)
+..|+..++|.-|.. +..-++-.|+.....-.++.- ..+|...++.+ ..|.+.+++.....-.--.+ +|
T Consensus 98 rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey-----ig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~-~i 171 (316)
T COG3204 98 RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY-----IGGNQFVIVDERDRALYLFTVDADTTVISAKVQ-KI 171 (316)
T ss_pred ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE-----ecCCEEEEEehhcceEEEEEEcCCccEEeccce-EE
Q ss_pred eCCCccc------EEEEecCCCeEEEEEeecccccc
Q 000548 999 PLKATPH------QITYFAEKNLYPLIVSVPVLKPL 1028 (1431)
Q Consensus 999 ~L~~tpr------ki~y~~~~~~~~v~~s~~~~~~~ 1028 (1431)
||+.+++ -++|.|..+.+.++ ++++|.
T Consensus 172 ~L~~~~k~N~GfEGlA~d~~~~~l~~a---KEr~P~ 204 (316)
T COG3204 172 PLGTTNKKNKGFEGLAWDPVDHRLFVA---KERNPI 204 (316)
T ss_pred eccccCCCCcCceeeecCCCCceEEEE---EccCCc
No 206
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=22.28 E-value=2.8e+02 Score=34.04 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=33.2
Q ss_pred EECCCCCceEEEEEEEeeecC---CCCcceEEEEEeeeecCCCcccceeEEEEEEe
Q 000548 1083 IPMQSSENALTVRVVTLFNTT---TKENETLLAIGTAYVQGEDVAARGRVLLFSTG 1135 (1431)
Q Consensus 1083 ~~l~~~E~v~s~~~v~l~~~~---~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~ 1135 (1431)
.+.+++|.++|++++.|.+.. +...-.+|+||| +.|.+++|.-.
T Consensus 51 l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~---------ssG~vrfyte~ 97 (415)
T PF14655_consen 51 LDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT---------SSGYVRFYTEN 97 (415)
T ss_pred ccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe---------cccEEEEEecc
Confidence 455667999999999996421 223568999999 58999999874
No 207
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.26 E-value=1.3e+03 Score=27.04 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=40.0
Q ss_pred eeccCCCCCceEEEEEecCeEEEEEcCCCCccCCC---cceEEeeC---CCcccEEEEecCCCeEEEEE
Q 000548 958 TVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNY---WPVQKIPL---KATPHQITYFAEKNLYPLIV 1020 (1431)
Q Consensus 958 ~~f~~~~~~~g~i~~~~~~~L~I~~l~~~~~~d~~---~~ir~i~L---~~tprki~y~~~~~~~~v~~ 1020 (1431)
..|+|.. .-.+.++.+|..||-..+-.+..+.. +-.-.+|| |..|.|+...|+.+.+++.-
T Consensus 284 ~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 284 AAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred eeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence 4455432 34577888899999877754433322 22223566 44799999999999999853
No 208
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.14 E-value=1.7e+03 Score=28.23 Aligned_cols=136 Identities=18% Similarity=0.139 Sum_probs=72.9
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCccEEEEEE-EeecCceEEEcccc-CeEEEEeCCeEEE--EEccC
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYS-KELKGAISALASLQ-GHLLIASGPKIIL--HKWTG 1182 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~~l~lv~~-~~~~g~V~al~~~~-g~Ll~~vg~~l~v--~~~~~ 1182 (1431)
...++|.||. +|.|++|.+... ++.--.+ -...|+|.++..-+ -..+-++|...++ |.+..
T Consensus 69 ~t~~lvlgt~---------~g~v~~ys~~~g------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 69 DTSMLVLGTP---------QGSVLLYSVAGG------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred CceEEEeecC---------CccEEEEEecCC------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 5679999995 899999999752 3433333 44678888887433 3556666665554 44445
Q ss_pred CeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEec--CC-eeEEEEEe
Q 000548 1183 TELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLID--GS-TLSLVVSD 1259 (1431)
Q Consensus 1183 ~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d--~~-~l~~i~~D 1259 (1431)
+++.++..-. +..+.+|....+-=+.+-+.+.+.++ +-+..+++.-.- .++-.|.+..|..+ +. -.+|+.+|
T Consensus 134 ~~~~~~~~~~--~~~~~sl~is~D~~~l~~as~~ik~~--~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 134 KVIIRIWKEQ--KPLVSSLCISPDGKILLTASRQIKVL--DIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred ceeeeeeccC--CCccceEEEcCCCCEEEeccceEEEE--EccCceEEEEec-CCCcceEEEEEEEeccccccceeeecc
Confidence 5555544333 33455555544422233345666665 434444433221 23334555555433 21 02256655
Q ss_pred CCC
Q 000548 1260 EQK 1262 (1431)
Q Consensus 1260 ~~g 1262 (1431)
...
T Consensus 209 ~~~ 211 (541)
T KOG4547|consen 209 AAE 211 (541)
T ss_pred ccc
Confidence 533
No 209
>PHA02790 Kelch-like protein; Provisional
Probab=21.61 E-value=5.1e+02 Score=32.57 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=55.4
Q ss_pred eEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEE-EEeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCe
Q 000548 1174 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFIL-LGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGST 1252 (1431)
Q Consensus 1174 ~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Il-vGD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~ 1252 (1431)
.+..|+...++....+.... +-.-.++.+.++.|+ +|-....-++-+|++..++-..++.=+.+|.-.++. .+ ++.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~-~g~ 364 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNS-PRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SI-NNV 364 (480)
T ss_pred eEEEEECCCCEEEECCCCCc-hhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EE-CCE
Confidence 46678877766655554433 222233445677665 453211123467888888888887766677654554 24 468
Q ss_pred eEEEEEeCCCcEEEEeeCCCC
Q 000548 1253 LSLVVSDEQKNIQIFYYAPKM 1273 (1431)
Q Consensus 1253 l~~i~~D~~gNl~vl~~~p~~ 1273 (1431)
|+++++-....-.+..|+|..
T Consensus 365 IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred EEEecCcCCCCccEEEEeCCC
Confidence 888877432222345577753
No 210
>PRK04792 tolB translocation protein TolB; Provisional
Probab=21.53 E-value=6.7e+02 Score=31.17 Aligned_cols=94 Identities=10% Similarity=-0.005 Sum_probs=45.8
Q ss_pred eEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCCe
Q 000548 1174 KIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGST 1252 (1431)
Q Consensus 1174 ~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~~ 1252 (1431)
.|+++++...+......... ...-...+..++.|++ .+.-....++.++.+.+++..+..+. ...+...|-.|++.
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~--~~~~~p~wSpDG~~ 319 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR--AIDTEPSWHPDGKS 319 (448)
T ss_pred EEEEEECCCCCeEEecCCCC-CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC--CCccceEECCCCCE
Confidence 45666665443333322222 1111223344555544 34333344555565555555554432 12344555557666
Q ss_pred eEEEEEeCCCcEEEEeeCC
Q 000548 1253 LSLVVSDEQKNIQIFYYAP 1271 (1431)
Q Consensus 1253 l~~i~~D~~gNl~vl~~~p 1271 (1431)
| ++.+|+.|+..++.++.
T Consensus 320 I-~f~s~~~g~~~Iy~~dl 337 (448)
T PRK04792 320 L-IFTSERGGKPQIYRVNL 337 (448)
T ss_pred E-EEEECCCCCceEEEEEC
Confidence 6 45577777766666554
No 211
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=20.92 E-value=2.6e+02 Score=37.28 Aligned_cols=106 Identities=14% Similarity=0.027 Sum_probs=57.2
Q ss_pred CceEEEccccCeEEEEeCCeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEEEeccccEEEEEEeccccE-EEEee
Q 000548 1155 GAISALASLQGHLLIASGPKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQ-LNLLA 1233 (1431)
Q Consensus 1155 g~V~al~~~~g~Ll~~vg~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~ll~~~~~~~~-l~~~a 1233 (1431)
||+.+..-+++||+|+.|..+++|++....|++....-- ..-++ ....-+--+.-+.|+.+++++...+ ...-+
T Consensus 8 ~~l~~~~~~~~~llag~gp~i~~yd~~s~~li~~~~~~~-~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 8 GPLNLPQLVSDYLLAGSGPEILVYDLSSGCLIRHLIQSK-ILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred ccccchhhccceeeecCCCceEEeeCCchhHhhhhhhhc-ccccc----cccccceeccceEEEEEeecceeecchhhhh
Confidence 566666667799999999999999999776554322110 00111 1111111223344556666554332 22234
Q ss_pred eccCCccEEEEEEEecCCeeEEEEEeCCCcEEEE
Q 000548 1234 KDFGSLDCFATEFLIDGSTLSLVVSDEQKNIQIF 1267 (1431)
Q Consensus 1234 rD~~~~~vta~~fl~d~~~l~~i~~D~~gNl~vl 1267 (1431)
-+..+.|++.+++--++.. ++..-.+..+++.
T Consensus 83 ~~~~s~wi~g~~l~~e~k~--i~l~~~~ns~~i~ 114 (967)
T KOG0974|consen 83 IERFSDWIFGAKLFEENKK--IALVTSRNSLLIR 114 (967)
T ss_pred hhhccccccccchhhhcce--EEEEEcCceEEEE
Confidence 4556778888774334444 3334444444444
No 212
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=20.85 E-value=1.6e+02 Score=32.04 Aligned_cols=103 Identities=11% Similarity=0.115 Sum_probs=53.7
Q ss_pred cEEEEEeccceEEEEEEeCCCCCeeEEeeeeecCcccccccCCCccccCCCe--EEECCCCcEEEEEecCceEEEEeCcc
Q 000548 131 DSIILAFEDAKISVLEFDDSIHGLRITSMHCFESPEWLHLKRGRESFARGPL--VKVDPQGRCGGVLVYGLQMIILKASQ 208 (1431)
Q Consensus 131 D~Llv~~~~~klsil~~d~~~~~l~t~Slh~~E~~~~~~~~~g~~~~~~~~~--l~vDP~~Rc~~l~~~~~~L~ilp~~~ 208 (1431)
-.-.|++.+..+-|-.|-.- -++ .+-|.-...| +..+--+..-..|.+ .+-.|.|..++-.-.+..++++||+.
T Consensus 45 ~lyavgsnskt~ric~yp~l-~~~--r~~hea~~~p-p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~ 120 (350)
T KOG0641|consen 45 GLYAVGSNSKTFRICAYPAL-IDL--RHAHEAAKQP-PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNA 120 (350)
T ss_pred ceEEeccCCceEEEEccccc-cCc--ccccccccCC-CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccc
Confidence 46677888888888888322 222 2334211111 000000111112222 33466677666656677799999987
Q ss_pred CCCCCCCCCCCCCCCCCcccceeccEEEEcccCCCCceeeEeeccCCC
Q 000548 209 GGSGLVGDEDTFGSGGGFSARIESSHVINLRDLDMKHVKDFIFVHGYI 256 (1431)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~ldi~~V~D~~FL~gy~ 256 (1431)
+...+. .+...+.+-+ ..|.||+||.+-.
T Consensus 121 dt~~~~----------------g~dle~nmhd---gtirdl~fld~~~ 149 (350)
T KOG0641|consen 121 DTCNAT----------------GHDLEFNMHD---GTIRDLAFLDDPE 149 (350)
T ss_pred cccccc----------------CcceeeeecC---CceeeeEEecCCC
Confidence 643222 1223333322 3899999998753
No 213
>PRK00178 tolB translocation protein TolB; Provisional
Probab=20.77 E-value=9.5e+02 Score=29.39 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=49.7
Q ss_pred CeEEEEEccCCeeeeeEeecCCCeeEEEEEEeCCEEEE-EeccccEEEEEEeccccEEEEeeeccCCccEEEEEEEecCC
Q 000548 1173 PKIILHKWTGTELNGIAFYDAPPLYVVSLNIVKNFILL-GDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGS 1251 (1431)
Q Consensus 1173 ~~l~v~~~~~~~L~~~a~~~~~~~~i~~l~~~~~~Ilv-GD~~~Sv~ll~~~~~~~~l~~~arD~~~~~vta~~fl~d~~ 1251 (1431)
..|++++++..+..+...... .......+..+++|++ .+-...-.++.++.+.+++..+.++.. ..+...|-.|++
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~--~~~~~~~spDg~ 299 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA--IDTEPFWGKDGR 299 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC--CcCCeEECCCCC
Confidence 468888887654444333332 1111233445666664 333333445556666666666654322 234445555777
Q ss_pred eeEEEEEeCCCcEEEEeeC
Q 000548 1252 TLSLVVSDEQKNIQIFYYA 1270 (1431)
Q Consensus 1252 ~l~~i~~D~~gNl~vl~~~ 1270 (1431)
.+ ++.+|+.|+-.++.++
T Consensus 300 ~i-~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 300 TL-YFTSDRGGKPQIYKVN 317 (430)
T ss_pred EE-EEEECCCCCceEEEEE
Confidence 76 4567777765555544
No 214
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=20.77 E-value=1.3e+03 Score=29.83 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=89.8
Q ss_pred EEEEEeccCCCCCCceeeeeEECCCCC-ceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEeecCCCC
Q 000548 1063 YEVRILEPDRAGGPWQTRATIPMQSSE-NALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNP 1141 (1431)
Q Consensus 1063 ~~v~lid~~~~~~~~~~~~~~~l~~~E-~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~ 1141 (1431)
..|.+.||.+ .+-...|+-++ .|.|++- +. +++...+++.|- +.|++.+|++..+
T Consensus 34 ~~Iav~dp~k------~~i~t~l~GH~a~VnC~~~--l~---~s~~~a~~vsG~---------sD~~v~lW~l~~~---- 89 (764)
T KOG1063|consen 34 PAIAVADPEK------ILIVTTLDGHVARVNCVHW--LP---TSEIVAEMVSGD---------SDGRVILWKLRDE---- 89 (764)
T ss_pred ceEEEeCccc------ceeEEeccCCccceEEEEE--cc---cccccceEEEcc---------CCCcEEEEEEeeh----
Confidence 3677888852 12222344332 3455553 33 223456888886 5899999999843
Q ss_pred CccEEEEEEEe-ecCceEEEccccCeEEE-EeCCeEEEEEccCCee--ee-eEee--cCCCeeEEEEEEeCCEEE-EEec
Q 000548 1142 QNLVTEVYSKE-LKGAISALASLQGHLLI-ASGPKIILHKWTGTEL--NG-IAFY--DAPPLYVVSLNIVKNFIL-LGDI 1213 (1431)
Q Consensus 1142 ~~~l~lv~~~~-~~g~V~al~~~~g~Ll~-~vg~~l~v~~~~~~~L--~~-~a~~--~~~~~~i~~l~~~~~~Il-vGD~ 1213 (1431)
. +.-+...+ ..+.++|+.......-+ +.-..+++|+-++.++ .. ..|- ..+|....-+.-.+-+++ +|-.
T Consensus 90 -~-~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs 167 (764)
T KOG1063|consen 90 -Y-LIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS 167 (764)
T ss_pred -h-eEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc
Confidence 2 32222222 35566666654332222 4456788888865552 11 1111 111222222221122222 3333
Q ss_pred cccEEEEEEeccccEEEEeee-ccCCccEEEEEEEecC-CeeEEEEEeCCCcEEEEeeCCCC
Q 000548 1214 HKSIYFLSWKEQGAQLNLLAK-DFGSLDCFATEFLIDG-STLSLVVSDEQKNIQIFYYAPKM 1273 (1431)
Q Consensus 1214 ~~Sv~ll~~~~~~~~l~~~ar-D~~~~~vta~~fl~d~-~~l~~i~~D~~gNl~vl~~~p~~ 1273 (1431)
-.=|.++... ..+|..++- --+.-|+-+++|---+ +.+.+..+-.+.-|.+.+..+.+
T Consensus 168 ~~~v~~~s~~--~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~ 227 (764)
T KOG1063|consen 168 KFVVDLYSSS--ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGD 227 (764)
T ss_pred ceEEEEeccC--CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecC
Confidence 3333333322 234433332 1234577776664332 35545666668888888765544
No 215
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=20.62 E-value=1.7e+02 Score=24.00 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.6
Q ss_pred EEEEEEEEeeeeEeEEEEEecCCCCCCCCCcEEEEEeccceEEEEEEe
Q 000548 101 LELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFD 148 (1431)
Q Consensus 101 L~lv~~~~l~G~I~~l~~~r~~~~~~~~~~D~Llv~~~~~klsil~~d 148 (1431)
++++.+..+...|..+. ..+ ..|.|.+++.++++.+-+.|
T Consensus 2 f~~~~~k~l~~~v~~~~-w~P-------~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 2 FRQLGEKNLPSRVSCMS-WCP-------TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cceecccCCCCcEEEEE-ECC-------CCCEEEEEECCCeEEEEECC
Confidence 56677777777766333 232 57999999999999998874
No 216
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=20.61 E-value=8.1e+02 Score=31.85 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=48.6
Q ss_pred eEECCCCCceEEEEEEEeeecCCCCcceEEEEEeeeecCCCcccceeEEEEEEee---cCCCCCc-cEEEEEEEe-ecCc
Q 000548 1082 TIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQGEDVAARGRVLLFSTGR---NADNPQN-LVTEVYSKE-LKGA 1156 (1431)
Q Consensus 1082 ~~~l~~~E~v~s~~~v~l~~~~~~~~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~---~~~~~~~-~l~lv~~~~-~~g~ 1156 (1431)
+..|++.+.+..+.-.. +.+....++||-. .+|++|.-.. ....|.. .++.+--.+ +..+
T Consensus 66 ~~~f~~~~~I~dLDWts-----t~d~qsiLaVGf~----------~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~ 130 (631)
T PF12234_consen 66 EESFSEDDPIRDLDWTS-----TPDGQSILAVGFP----------HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP 130 (631)
T ss_pred eeeecCCCceeeceeee-----cCCCCEEEEEEcC----------cEEEEEEccchhhhcCCcccceeEEEEeecCCCCC
Confidence 34466677776665443 3345678888863 4555553321 1111211 233332223 3467
Q ss_pred eEEEccc-cCeEEEEeCCeEEEEEc
Q 000548 1157 ISALASL-QGHLLIASGPKIILHKW 1180 (1431)
Q Consensus 1157 V~al~~~-~g~Ll~~vg~~l~v~~~ 1180 (1431)
|...+-. +|.|++|.|++++||+-
T Consensus 131 Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 131 IGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred ccceeEecCCeEEEEeCCEEEEECC
Confidence 7776655 67999999999999864
No 217
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=20.04 E-value=6.7e+02 Score=29.58 Aligned_cols=149 Identities=20% Similarity=0.229 Sum_probs=80.7
Q ss_pred cceEEEEEeeeecCCCcccceeEEEEEEeecCCCCCc-----------cEEEEEEEeecCceEEEcccc-----CeEEEE
Q 000548 1107 NETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQN-----------LVTEVYSKELKGAISALASLQ-----GHLLIA 1170 (1431)
Q Consensus 1107 ~~~~ivVGT~~~~~e~~~~~Gri~vf~i~~~~~~~~~-----------~l~lv~~~~~~g~V~al~~~~-----g~Ll~~ 1170 (1431)
..+|+++|. ..||+.+|+-.+.... +. .+..+-+.++...|..+.-++ -+|+.+
T Consensus 36 ~Ge~LatGd---------kgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 36 YGERLATGD---------KGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred ccceEeecC---------CCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 347999997 4789888877653221 11 122333445555666666553 256666
Q ss_pred eCCeEEEEEccCCe--e---------------------------e----ee-EeecCCCeeEEEEEEe--CCEEEEEecc
Q 000548 1171 SGPKIILHKWTGTE--L---------------------------N----GI-AFYDAPPLYVVSLNIV--KNFILLGDIH 1214 (1431)
Q Consensus 1171 vg~~l~v~~~~~~~--L---------------------------~----~~-a~~~~~~~~i~~l~~~--~~~IlvGD~~ 1214 (1431)
--.+|.+|.+..+. . . ++ -+-...+..|.+|++- +...+-+|-+
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdL 185 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDL 185 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccce
Confidence 66789999885321 1 0 01 1112214455566653 3455555544
Q ss_pred ccEEEEEEeccccEEEEeeeccCCcc-------EEEEEEEecCCeeEEEEEeCCCcEEEEee
Q 000548 1215 KSIYFLSWKEQGAQLNLLAKDFGSLD-------CFATEFLIDGSTLSLVVSDEQKNIQIFYY 1269 (1431)
Q Consensus 1215 ~Sv~ll~~~~~~~~l~~~arD~~~~~-------vta~~fl~d~~~l~~i~~D~~gNl~vl~~ 1269 (1431)
+ |-|....-.++.|..+ |..|.. +|+++|......+ |+-+-..|+|++...
T Consensus 186 R-INLWnlei~d~sFnIV--DIKP~nmEeLteVITsaEFhp~~cn~-f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 186 R-INLWNLEIIDQSFNIV--DIKPANMEELTEVITSAEFHPHHCNV-FVYSSSKGTIRLCDM 243 (433)
T ss_pred e-eeeccccccCCceeEE--EccccCHHHHHHHHhhhccCHhHccE-EEEecCCCcEEEeec
Confidence 3 2233333334444443 222222 4788886665554 677888898888654
Done!