Query 000548
Match_columns 1431
No_of_seqs 217 out of 717
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 15:55:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000548.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_323-327//hhsearch_pdb/000548hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 1.0 1 1 1529.8 128.6 1088 1-1427 19-1157(1158)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 52.1 37.7 21 753-773 757-777 (1249)
3 3v7d_B Cell division control p 1.0 1 1 47.6 42.5 111 661-856 125-235 (464)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 46.5 41.9 112 660-855 659-772 (1249)
5 1pgu_A Actin interacting prote 1.0 1 1 42.9 55.1 24 753-776 266-289 (615)
6 3mkq_A Coatomer beta'-subunit; 1.0 1 1 41.4 42.2 90 1108-1224 404-504 (814)
7 1pgu_A Actin interacting prote 1.0 1 1 40.9 55.6 179 1108-1336 418-610 (615)
8 1gxr_A ESG1, transducin-like e 1.0 1 1 40.9 32.9 17 839-855 110-126 (337)
9 1gxr_A ESG1, transducin-like e 1.0 1 1 40.3 33.9 26 1240-1267 308-333 (337)
10 3k26_A Polycomb protein EED; W 1.0 1 1 40.0 22.6 24 752-775 86-109 (366)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=1.00 E-value=1 Score=1529.83 Aligned_cols=1088 Identities=19% Similarity=0.309 Sum_probs=882.4
Q ss_pred CCCCEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEEEECCCCCC
Q ss_conf 96401112358960103589875348888899975433221234688778999988299982885999999980268733
Q 000548 1 MSFAAYKMMHWPTGIANCGSGFITHSRADYVPQIPLIQTEELDSELPSKRGIGPVPNLVVTAANVIEIYVVRVQEEGSKE 80 (1431)
Q Consensus 1 ~~~~~~~~~~~pT~V~~s~~~~Ft~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nLVvak~~~LeIy~i~~~~~g~~~ 80 (1431)
|+|+|+.|+||||+|+||++|||++++.+ ||||||+|+||||++. +++
T Consensus 19 m~~~Y~~t~~~pT~V~~av~g~F~~~~~~---------------------------~Lvvak~~~Lel~~~~--~~~--- 66 (1158)
T 3ei3_A 19 MSYNYVVTAQKPTAVNGCVTGHFTSAEDL---------------------------NLLIAKNTRLEIYVVT--AEG--- 66 (1158)
T ss_dssp CCCEEEEEEECCCSCCEEEEECSSCSSCC---------------------------EEEEEETTEEEEEEEE--TTE---
T ss_pred CCEEEEEEEECCCHHHEEEEEECCCCCCC---------------------------EEEEECCCEEEEEEEC--CCC---
T ss_conf 10899998668985658999985899965---------------------------8999439999999886--565---
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCEEEEEEE
Q ss_conf 45776332231135665223999989984336869899851899998998499997365419999993999982379644
Q 000548 81 SKNSGETKRRVLMDGISAASLELVCHYRLHGNVESLAILSQGGADNSRRRDSIILAFEDAKISVLEFDDSIHGLRITSMH 160 (1431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~L~lv~~~~l~G~I~~i~~~r~~~~~~~~~~D~Lli~~~~~klsil~~d~~~~~l~t~Slh 160 (1431)
|++++++++||+|++|+++|+.++ ++|+|+|+|+++|+++|+||++++.+.+++.|
T Consensus 67 --------------------L~~v~~~~l~G~I~~l~~~r~~g~----~~D~L~v~td~~~~~il~~d~~~~~~~~~t~~ 122 (1158)
T 3ei3_A 67 --------------------LRPVKEVGMYGKIAVMELFRPKGE----SKDLLFILTAKYNACILEYKQSGESIDIITRA 122 (1158)
T ss_dssp --------------------EEEEEEEECSSCEEEEEEECCTTC----SSCEEEEEETTCEEEEEEEEC-CCCCEEEEEE
T ss_pred --------------------EEEEEEEECCCEEEEEEEECCCCC----CCEEEEEEECCCEEEEEEECCCCCCEEEEEEE
T ss_conf --------------------699999983337778888868999----84099999177609999985888815689996
Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCEEEECCC
Q ss_conf 30284200135787655689849988999689999609539999284589999888888899998653000218998355
Q 000548 161 CFESPEWLHLKRGRESFARGPLVKVDPQGRCGGVLVYGLQMIILKASQGGSGLVGDEDTFGSGGGFSARIESSHVINLRD 240 (1431)
Q Consensus 161 ~~e~~~~~~~~~g~~~~~~~~~l~vDP~~Rc~~l~~~~~~L~ilp~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~i~l~~ 240 (1431)
+..- ..+.|+ +..+|++++|||.|||+++++|++.++|+|+++.+.. ..++.+++.+
T Consensus 123 ~~~~----~~~~~r-~~~~g~~l~vDP~gR~~~l~~~e~~~~v~pl~~~~~~------------------l~~~~~~l~~ 179 (1158)
T 3ei3_A 123 HGNV----QDRIGR-PSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKE------------------LKAFNIRLEE 179 (1158)
T ss_dssp EEEC----CCSSCC-BCTTCCEEEECTTSSEEEEECBTTEEEEEECCTTCTT------------------CCCEEEECSC
T ss_pred CCCC----CCCCCC-CCCCCCEEEECCCCCEEEEEECCCEEEEEEECCCCCC------------------CCCCCCCCCC
T ss_conf 2445----567564-5777887999688899999931598999994388666------------------6220215654
Q ss_pred CCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCC-CCEEEEECCCCCCCCEEEEECCCCC
Q ss_conf 777740247410588864399996348776663100243159999998403300-2124574157845436798418988
Q 000548 241 LDMKHVKDFIFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQ-HPLIWSAMNLPHDAYKLLAVPSPIG 319 (1431)
Q Consensus 241 ldi~~v~d~~FL~gy~~PtlaiL~~~~~tw~gr~~~~~~t~~~~~~sLd~~~~~-~~~i~s~~~lp~~~~~LipvP~p~g 319 (1431)
+ +|+||+|||||++||||+||++.. || .+.+|+||+..+. .+.+|+..++|++|++|||||+|+|
T Consensus 180 ~---~v~d~~fL~g~~~P~~A~Ly~d~~---~~--------~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~g 245 (1158)
T 3ei3_A 180 L---HVIDVKFLYGCQAPTICFVYQDPQ---GR--------HVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFG 245 (1158)
T ss_dssp C---CEEEEEECSSCSSCEEEEEEEETT---EE--------EEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTC
T ss_pred C---EEEEEEEECCCCCCEEEEEEECCC---CC--------EEEEEEEECCCCEEEECCCCCCCCCCCCCEEEECCCCCC
T ss_conf 3---289999965999868999998899---98--------999999976777054424412459999788999788885
Q ss_pred EEEEEECCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCEEEEEE-ECCEEEEEECCCCEEEEEEEECCE--
Q ss_conf 49999237289973587205772677766888766678886156403048994-276699992899789999997690--
Q 000548 320 GVLVVGANTIHYHSQSASCALALNNYAVSLDSSQELPRSSFSVELDAAHATWL-QNDVALLSTKTGDLVLLTVVYDGR-- 396 (1431)
Q Consensus 320 GvLVig~n~I~y~~~~~~~~~~~n~~~~~~~~~~~~p~~~~~~~ld~~~~~~~-~~~~~Ll~~~~G~l~~l~l~~dg~-- 396 (1431)
|+||||+|.|+|+|+.+...++. +..+++ .+ .|.+.+. +..++||++++|+||+|+|..|++
T Consensus 246 Gvlv~g~n~i~y~~~~~~~~~~~----------p~~~~~----~i-~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~ 310 (1158)
T 3ei3_A 246 GAIIIGQESITYHNGDKYLAIAP----------PIIKQS----TI-VCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMD 310 (1158)
T ss_dssp CEEEECSSCEEEEETTEEEEECC----------GGGGGS----CE-EEEEECSTTSSEEEEEETTCEEEEEEEEEEC---
T ss_pred EEEEEECCEEEEECCCCCEEEEC----------CCCCCC----EE-EEEEEEECCCCEEEEEECCCCEEEEEEEECCCCC
T ss_conf 69999788899991997558726----------645786----58-9999993699789999599999999999717756
Q ss_pred ---EEEEEEEEECCCCCCCCCEEEECCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf ---56668987459974443147862882999821188369998527886435779854347765689510000389960
Q 000548 397 ---VVQRLDLSKTNPSVLTSDITTIGNSLFFLGSRLGDSLLVQFTCGSGTSMLSSGLKEEFGDIEADAPSTKRLRRSSSD 473 (1431)
Q Consensus 397 ---~v~~l~l~~~~~~~~~s~l~~l~~~~lFvgS~~gDS~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1431)
.|++++++|+|++++|+|++++++|+||+||++|||+||||...+ +
T Consensus 311 ~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~----------~--------------------- 359 (1158)
T 3ei3_A 311 GTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDS----------N--------------------- 359 (1158)
T ss_dssp --CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSC----------C---------------------
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEECCCEEEEEEECCCCEEEEEECCC----------C---------------------
T ss_conf 752589989998588457518999889879999962783899983389----------9---------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC----CCCCCCCCCCEEE--------
Q ss_conf 1101457421123478788865554205799963002468864221121236688----7557888997199--------
Q 000548 474 ALQDMVNGEELSLYGSASNNTESAQKTFSFAVRDSLVNIGPLKDFSYGLRINADA----SATGISKQSNYEL-------- 541 (1431)
Q Consensus 474 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~l~v~D~l~NigPI~D~~vg~~~~~~~----~~sG~g~~g~l~~-------- 541 (1431)
+ ...+++++|+++|||||.||++++....+. +|||.|++|+|++
T Consensus 360 ---~---------------------~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~ 415 (1158)
T 3ei3_A 360 ---E---------------------QGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH 415 (1158)
T ss_dssp ---T---------------------TSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred ---C---------------------CCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEECCCCEE
T ss_conf ---8---------------------6451774732157677116999716778987099998769997589982488779
Q ss_pred ----EECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE-CCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf ----955997779899850899998876434536867522999971453269990-362322204556112566099843
Q 000548 542 ----VELPGCKGIWTVYHKSSRGHNADSSRMAAYDDEYHAYLIISLEARTMVLET-ADLLTEVTESVDYFVQGRTIAAGN 616 (1431)
Q Consensus 542 ----~~l~g~~~iWtv~~~~~~~~~~~~~~~~~~~~~~~~yLilS~~~~T~Vl~~-~~~~eev~~~~gF~~~~~TI~ag~ 616 (1431)
.+|||++++|+++.. .++++|.|||+||.++|+||++ +++++|++ .+||.++++||+|++
T Consensus 416 ~~~~~~l~gv~~iWtl~~~--------------~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~-~~gf~~~~~TL~~~~ 480 (1158)
T 3ei3_A 416 EHASIDLPGIKGLWPLRSD--------------PNRETDDTLVLSFVGQTRVLMLNGEEVEETE-LMGFVDDQQTFFCGN 480 (1158)
T ss_dssp EEEEECCCSCCEEEEECCC--------------SSCSSCCEEEEEETTEEEEEEEETTEEEEEC-CTTCCSSSCEEEEEE
T ss_pred EEEEECCCCCCEEEEEEEC--------------CCCCCCCEEEEECCCCEEEEEEECCCCCCCC-CCCCCCCCCCEEEEE
T ss_conf 9896059985579997606--------------7777788999978897699997077545210-155438898199999
Q ss_pred ECCCCEEEEEECCCEEEECCCC--CEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 0698489999269299980883--13787389999998999999649999980878999992892999995189736985
Q 000548 617 LFGRRRVIQVFERGARILDGSY--MTQDLSFGPSNSESGSGSENSTVLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSV 694 (1431)
Q Consensus 617 l~~~~~ivQVt~~~irl~~~~~--~~~~~~~~~~~~~~~~~~~~~~Iv~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~ 694 (1431)
+ +++++||||+++||+++.+. .+++|.++ .+..|++|+++++|++++ .++++++|+++... +..
T Consensus 481 l-~~~~ivQVt~~~Irli~~~~~~~~~~w~~p----------~~~~I~~As~n~~~vvva-~g~~l~~fel~~~~--L~~ 546 (1158)
T 3ei3_A 481 V-AHQQLIQITSASVRLVSQEPKALVSEWKEP----------QAKNISVASCNSSQVVVA-VGRALYYLQIHPQE--LRQ 546 (1158)
T ss_dssp E-TTTEEEEEESSCEEEEESSSCCEEEEECCT----------TCCCCCEEEECSSEEEEE-ETTEEEEEEEETTE--EEE
T ss_pred C-CCCEEEEEECCEEEEEECCCCEEEEEEECC----------CCCEEEEEEECCCEEEEE-ECCEEEEEEEECCC--EEE
T ss_conf 5-898599990697999978888088999889----------998899999579879999-79989999963894--246
Q ss_pred ECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE-EECCCEEEEEECCCCCE
Q ss_conf 24832136887557877611589985223445654445775433469999999878599999-94298599998899805
Q 000548 695 QTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGADGGPLDQGDIYSVV-CYESGALEIFDVPNFNC 773 (1431)
Q Consensus 695 ~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v-~~~~g~l~I~sLp~~~~ 773 (1431)
..... .+.+|+|+++.... ++...+. +++| +|.+++++||+||+++.
T Consensus 547 ~~~~~---l~~evscl~i~~~~----------------------------~~~~~s~-~~aVg~~~d~tv~I~sL~~l~~ 594 (1158)
T 3ei3_A 547 ISHTE---MEHEVACLDITPLG----------------------------DSNGLSP-LCAIGLWTDISARILKLPSFEL 594 (1158)
T ss_dssp EEEEE---CSSCEEEEECCCCS----------------------------SSTTCCS-EEEEEETTTTEEEEEETTTCCE
T ss_pred ECCCC---CCCCEEEEEEECCC----------------------------CCCCCCC-EEEEEECCCCEEEEEECCCCCE
T ss_conf 12357---89815899920688----------------------------8754466-7999988898899998799876
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCEEEEE
Q ss_conf 68842656664211111000013343100157875477788645456541899996203688884099999609959999
Q 000548 774 VFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCY 853 (1431)
Q Consensus 774 v~~~~~~~~~~~~l~~~~~~~~~~~s~q~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~g~~~~~~~L~vgl~~G~l~~y 853 (1431)
+... +|++ +..+.++++..+ .+.+||++|++||.+++|
T Consensus 595 ~~~~------------------------~L~~---------------~~~p~si~l~~~---~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 595 LHKE------------------------MLGG---------------EIIPRSILMTTF---ESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp EEEE------------------------ECCS---------------SCCEEEEEEEEE---TTEEEEEEEETTSEEEEE
T ss_pred EEEE------------------------ECCC---------------CCCCCEEEEEEE---CCCCEEEEEECCCEEEEE
T ss_conf 8999------------------------8899---------------998847999983---897689999079869999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE-CCCCCEEEEEECCC
Q ss_conf 96312799999889999764344433443324432046980268866898878998853359940-46882499990897
Q 000548 854 QAYLFEGPENTSKSDDPVSTSRSLSVSNVSASRLRNLRFSRTPLDAYTREETPHGAPCQRITIFK-NISGHQGFFLSGSR 932 (1431)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~rf~k~~~~~~~~~~~~~~~g~~~i~~~~-~~~g~~~Vf~~g~~ 932 (1431)
.++... |++.+.|. +| +|.+|++++. ...|..+||++|+|
T Consensus 633 ~~d~~t--------------------g~l~d~r~---~~----------------LG~~pv~L~~~~~~~~~~V~a~s~r 673 (1158)
T 3ei3_A 633 GLNIET--------------------GLLSDRKK---VT----------------LGTQPTVLRTFRSLSTTNVFACSDR 673 (1158)
T ss_dssp EECTTT--------------------CCEEEEEE---EE----------------CCSSCCEEEEEESSSCEEEEEESSS
T ss_pred EECCCC--------------------CCCCCCEE---EE----------------CCCCCEEEEEEEECCCEEEEEECCC
T ss_conf 972788--------------------74166416---88----------------0787439999962893369997799
Q ss_pred CEEEEEECCCEEEEECCCCCCEEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEECC
Q ss_conf 66999938821896426898437981046788884199999449289998499984699810499637983048999368
Q 000548 933 PCWCMVFRERLRVHPQLCDGSIVAFTVLHNVNCNHGFIYVTSQGILKICQLPSGSTYDNYWPVQKIPLKATPHQITYFAE 1012 (1431)
Q Consensus 933 P~~i~~~~~~l~~~pl~~~~~v~~~~~f~~~~~~~g~i~~~~~~~L~i~~l~~~~~~~~~~~ir~i~l~~tp~~i~y~~~ 1012 (1431)
|||+|++++++.++|+. ..++.++++|++++|++|+++++ +++|+||+++... +|++|+|||++|||||+|||+
T Consensus 674 p~liy~~~~~l~~s~l~-~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~----~~~~~~ipL~~Tprri~y~~~ 747 (1158)
T 3ei3_A 674 PTVIYSSNHKLVFSNVN-LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ----KLHIRTVPLYESPRKICYQEV 747 (1158)
T ss_dssp CEEEEESSSSEEEEEBS-SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS----SEEEEEEECSSEEEEEEEEGG
T ss_pred CEEEEECCCCEEEECCC-HHHHCEEECCCCCCCCCCEEEEC-CCCEEEEEECCCC----CEEEEEEECCCCCEEEEECCC
T ss_conf 77999728906770247-57815670447123898499993-8956999956657----705899868887118998288
Q ss_pred CCEEEEEEEECCCCCCCC---CCCC------CCCCCCCCCC--CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEE
Q ss_conf 895999985235454211---0111------2333334444--5788883222466542117999961699999943666
Q 000548 1013 KNLYPLIVSVPVLKPLNQ---VLSL------LIDQEVGHQI--DNHNLSSVDLHRTYTVEEYEVRILEPDRAGGPWQTRA 1081 (1431)
Q Consensus 1013 ~~~~~v~~s~~~~~~~~~---~~~~------~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~lid~~~~~~~~~~i~ 1081 (1431)
+++|+|++++.. +... ..+. .++++..... ..+....++...++..++++++++|| .+|++++
T Consensus 748 ~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp----~t~~~i~ 821 (1158)
T 3ei3_A 748 SQCFGVLSSRIE--VQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ----HTFEVLH 821 (1158)
T ss_dssp GTEEEEEEEEEE--EECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET----TTCCEEE
T ss_pred CCEEEEEEEECC--CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCEEEEEEEEEEC----CCCEEEE
T ss_conf 898999998445--4565433450122123444310134432344333576112288404689999928----9776988
Q ss_pred EEECCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEC-CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEE
Q ss_conf 67779998367999999631588876219999961005-98866660699999764599997538999988624831898
Q 000548 1082 TIPMQSSENALTVRVVTLFNTTTKENETLLAIGTAYVQ-GEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISAL 1160 (1431)
Q Consensus 1082 ~~~l~~~E~v~si~~v~l~~~~~~~~~~~ivVGT~~~~-~E~~~~~Gri~vf~i~~~~~~~~~~l~~i~~~~~~G~V~al 1160 (1431)
+|+|++||.++|++.|.|. ++.++|++|||++.. +|+++++|||++|++.+ .||+++|+++++|+|+||
T Consensus 822 ~~~l~~nE~~~sv~~v~~~----~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~------~kL~lv~~~~v~g~v~al 891 (1158)
T 3ei3_A 822 AHQFLQNEYALSLVSCKLG----KDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD------GKLQTVAEKEVKGAVYSM 891 (1158)
T ss_dssp EEECCTTEEEEEEEEECCT----TCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET------TEEEEEEEEEESSCEEEE
T ss_pred EEECCCCCCEEEEEEEEEC----CCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEC------CEEEEEEEEECCCCCEEE
T ss_conf 8967999516899999980----599889999941537888777865899999989------999999999728768798
Q ss_pred CCCCCEEEEEECCEEEEEECCCCEEEEE-EEECCCCEEEEEEEEECCEEEEEECCCCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 4446809999689699997249814446-850599836999988689999986355399999961156799965036872
Q 000548 1161 ASLQGHLLIASGPKIILHKWTGTELNGI-AFYDAPPLYVVSLNIVKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSL 1239 (1431)
Q Consensus 1161 ~~~~g~Ll~avg~~i~i~~~~~~~L~~~-a~~~~~~~~i~~l~~~~~~IlvGD~~~Sv~~l~~~~~~~~l~~~arD~~~~ 1239 (1431)
++|+|+|++|+|++|++|+|+++++++. +..-. .+.++.|++.+|+|+|||+|+|++|++|++++++|+++|||+.++
T Consensus 892 ~~~~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~ 970 (1158)
T 3ei3_A 892 VEFNGKLLASINSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPN 970 (1158)
T ss_dssp EEETTEEEEEETTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCB
T ss_pred EEECCEEEEECCCEEEEEECCCCCEEEEEEECCC-CEEEEEEECCCCEEEEEEHHHEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 4269989999199999998789965788730146-179999801498999999343089999976788599997236334
Q ss_pred CEEEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 28988998609916999980788599996189988884574689999885185056889986202778888999999888
Q 000548 1240 DCFATEFLIDGSTLSLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKT 1319 (1431)
Q Consensus 1240 ~vta~~fl~d~~~l~ii~~D~~gNl~vl~~~p~~~~s~~g~~L~~~~~f~lg~~vt~~~~~~~~~~~~~~~~~~~g~~~~ 1319 (1431)
|++|++| +|+++ ++++|++|||++++|+|+.+++.+++||+.+++||+|+.||+|+++++.++.... ....
T Consensus 971 ~vta~~~-ld~~t--~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~------~~~~ 1041 (1158)
T 3ei3_A 971 WMSAVEI-LDDDN--FLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE------TSTP 1041 (1158)
T ss_dssp CEEEEEE-EETTE--EEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------------C
T ss_pred CEEEEEE-ECCCC--EEEECCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCC------CCCC
T ss_conf 0789999-71686--8998588858999648888883126651108899589967469816560488755------5545
Q ss_pred CCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCC
Q ss_conf 86289997379848999957957699999999999840799999995333321369988999999711187899980799
Q 000548 1320 NRFALLFGTLDGSIGCIAPLDELTFRRLQSLQKKLVDSVPHVAGLNPRSFRQFHSNGKAHRPGPDSIVDCELLSHYEMLP 1399 (1431)
Q Consensus 1320 ~~~~ii~~T~~GsIg~i~pl~e~~~~~L~~Lq~~l~~~~~~~~Gl~~~~~R~~~~~~~~~~~~~~~vIDGdlie~fl~L~ 1399 (1431)
..+.++|+|++|+||+++|++++.|++|..||++|+..++++||+||++||+++++.+. .|+++||||||||+|++|+
T Consensus 1042 ~~~~il~~T~~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~--~~~~~~iDGdLle~fl~L~ 1119 (1158)
T 3ei3_A 1042 TQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKT--EPATGFIDGDLIESFLDIS 1119 (1158)
T ss_dssp EEEEEEEEETTSCEEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCE--ECCBSEEEHHHHHGGGGSC
T ss_pred CCCEEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCEECCCCC--CCCCCCCCHHHHHHHHCCC
T ss_conf 65239999368778999974999999999999999864789769897996170134556--7887659499999887599
Q ss_pred HHHHHHHHHHHC----------CCHHHHHHHHHHHHHC
Q ss_conf 999999999939----------9999999999971100
Q 000548 1400 LEEQLEIAHQTG----------TTRSQILSNLNDLALG 1427 (1431)
Q Consensus 1400 ~~~q~~ia~~lg----------~~~~~i~~~l~~l~~~ 1427 (1431)
.++|++||++++ ++++||.++||+|++-
T Consensus 1120 ~~~q~~ia~~l~~~~~~~~~~~~t~~ei~k~~e~l~r~ 1157 (1158)
T 3ei3_A 1120 RPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRI 1157 (1158)
T ss_dssp HHHHHHHCCCC------------CCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999863724444455799999999999998654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=52.08 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=10.9
Q ss_pred EEEEEECCCEEEEEECCCCCE
Q ss_conf 999994298599998899805
Q 000548 753 YSVVCYESGALEIFDVPNFNC 773 (1431)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~ 773 (1431)
+++.+..+|.+.+|.+.....
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~ 777 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANE 777 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEE
T ss_pred EEEEEECCCEEEEEECCCCCC
T ss_conf 899997898599996888865
No 3
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=1.00 E-value=1 Score=47.56 Aligned_cols=111 Identities=16% Similarity=0.236 Sum_probs=67.8
Q ss_pred EEEEEEECCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999808789999928929999951897369852483213688755787761158998522344565444577543346
Q 000548 661 VLSVSIADPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAID 740 (1431)
Q Consensus 661 Iv~asi~d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1431)
+.+.+..+.+++....||.|.++............. -...|.+++...
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~------h~~~V~~l~~~~-------------------------- 172 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG------HDGGVWALKYAH-------------------------- 172 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC------CSSCEEEEEECS--------------------------
T ss_pred EEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEEC------CCCCEEEEEECC--------------------------
T ss_conf 999998999999975999289999998838999927------776789999869--------------------------
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999998785999999429859999889980568842656664211111000013343100157875477788645456
Q 000548 741 GADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKENIH 820 (1431)
Q Consensus 741 ~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~~~~~~~~~~~~~~~~~~~ 820 (1431)
.. +++.+..||.+.+|.+...+.+..... .
T Consensus 173 ---------~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~----------------------------------------h 202 (464)
T 3v7d_B 173 ---------GG-ILVSGSTDRTVRVWDIKKGCCTHVFEG----------------------------------------H 202 (464)
T ss_dssp ---------TT-EEEEEETTSCEEEEETTTTEEEEEECC----------------------------------------C
T ss_pred ---------CC-EEEEEECCCCEEEEECCCCCEEEEECC----------------------------------------C
T ss_conf ---------99-899994789889997898957999899----------------------------------------8
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEE
Q ss_conf 541899996203688884099999609959999963
Q 000548 821 SMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQAY 856 (1431)
Q Consensus 821 ~~~i~~i~~~~~g~~~~~~~L~vgl~~G~l~~y~~~ 856 (1431)
.-.+..+.+.. ..+..+|+.+..||.+..|.+.
T Consensus 203 ~~~v~~l~~~~---~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 203 NSTVRCLDIVE---YKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp SSCEEEEEEEE---SSSCEEEEEEETTSCEEEEECC
T ss_pred CCCCEEEEEEC---CCCCCEEEEECCCCCEEEEECC
T ss_conf 98668999763---7998889997599828991078
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=46.55 Aligned_cols=112 Identities=14% Similarity=0.236 Sum_probs=62.0
Q ss_pred CEEEEEEE--CCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 49999980--8789999928929999951897369852483213688755787761158998522344565444577543
Q 000548 660 TVLSVSIA--DPYVLLGMSDGSIRLLVGDPSTCTVSVQTPAAIESSKKPVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGE 737 (1431)
Q Consensus 660 ~Iv~asi~--d~~vll~~~~g~i~~l~~~~~~~~l~~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~ 737 (1431)
.|.+..+. +.+++....||.+.++............. ....+.++++..+.
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~--------------------- 711 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE------HSEQVNCCHFTNKS--------------------- 711 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC------CSSCEEEEEECSSS---------------------
T ss_pred CEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECC------CCCCEEEEEEECCC---------------------
T ss_conf 789999926999899981899599987799936899958------99737999984089---------------------
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34699999998785999999429859999889980568842656664211111000013343100157875477788645
Q 000548 738 AIDGADGGPLDQGDIYSVVCYESGALEIFDVPNFNCVFTVDKFVSGRTHIVDTYMREALKDSETEINSSSEEGTGQGRKE 817 (1431)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~v~~~~g~l~I~sLp~~~~v~~~~~~~~~~~~l~~~~~~~~~~~s~q~~~~~~~~~~~~~~~~ 817 (1431)
...+++.+..+|.+.+|.+...+++.....-
T Consensus 712 ------------~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h------------------------------------- 742 (1249)
T 3sfz_A 712 ------------NHLLLATGSNDFFLKLWDLNQKECRNTMFGH------------------------------------- 742 (1249)
T ss_dssp ------------SCCEEEEEETTSCEEEEETTSSSEEEEECCC-------------------------------------
T ss_pred ------------CCEEEEEEECCCEEEEEECCCCCHHHEECCC-------------------------------------
T ss_conf ------------9659999808970999989996342201277-------------------------------------
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEEECCEEEEEEE
Q ss_conf 45654189999620368888409999960995999996
Q 000548 818 NIHSMKVVELAMQRWSAHHSRPFLFAILTDGTILCYQA 855 (1431)
Q Consensus 818 ~~~~~~i~~i~~~~~g~~~~~~~L~vgl~~G~l~~y~~ 855 (1431)
.-.+..+.+. ....+|..+..||.+..|.+
T Consensus 743 ---~~~v~~~~~s-----p~~~~l~s~s~dg~v~vwd~ 772 (1249)
T 3sfz_A 743 ---TNSVNHCRFS-----PDDELLASCSADGTLRLWDV 772 (1249)
T ss_dssp ---SSCEEEEEEC-----SSTTEEEEEESSSEEEEEEG
T ss_pred ---CCCEEEEEEE-----CCCCEEEEEECCCEEEEEEC
T ss_conf ---7978899992-----59998999978985999968
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=42.91 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=14.0
Q ss_pred EEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 999994298599998899805688
Q 000548 753 YSVVCYESGALEIFDVPNFNCVFT 776 (1431)
Q Consensus 753 ~l~v~~~~g~l~I~sLp~~~~v~~ 776 (1431)
+++.+..+|.+.+|.+...+.+..
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCEEEE
T ss_conf 799984899489997888927878
No 6
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=41.39 Aligned_cols=90 Identities=16% Similarity=0.210 Sum_probs=47.5
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEECC-CC----CEEE-EEECCEEEEEECC
Q ss_conf 2199999610059886666069999976459999753899998862483189844-46----8099-9968969999724
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALAS-LQ----GHLL-IASGPKIILHKWT 1181 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~E~~~~~Gri~vf~i~~~~~~~~~~l~~i~~~~~~G~V~al~~-~~----g~Ll-~avg~~i~i~~~~ 1181 (1431)
..++++|+. .|.+.+|+.... ..+.+.++.- -+ ++|+ ++....|.+|++.
T Consensus 404 g~~la~~~~---------~g~v~l~~~~~~---------------~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 404 SNSYALIDE---------TGQIKYYKNFKE---------------VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWD 459 (814)
T ss_dssp SSCEEEECT---------TCCEEEEETTEE---------------CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred CCEEEEEEC---------CCCEEEEECCCC---------------CCCEEECCCCCCCCEECCEEEEEECCCEEEEEECC
T ss_conf 985999968---------983999977777---------------52439737867552365469999669989999987
Q ss_pred CCEEEEEEEECCCCEEEEEEEEECCEEEEEE-----CCCCEEEEEEEC
Q ss_conf 9814446850599836999988689999986-----355399999961
Q 000548 1182 GTELNGIAFYDAPPLYVVSLNIVKNFILLGD-----IHKSIYFLSWKE 1224 (1431)
Q Consensus 1182 ~~~L~~~a~~~~~~~~i~~l~~~~~~IlvGD-----~~~Sv~~l~~~~ 1224 (1431)
..+++.. ++. +..-...+..+.++++++ ..+++.++.|+.
T Consensus 460 ~~~~~~~--~~~-~~~~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~ 504 (814)
T 3mkq_A 460 NGTLVRR--IDV-NAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNK 504 (814)
T ss_dssp TCCEEEE--ESS-CEEEEEECTTSSEEEEEECCCSSCSCSEEEEEECH
T ss_pred CCCEEEE--EEC-CCCEEEECCCCCEEEEEECCCCCCCCEEEEEEECH
T ss_conf 6959999--735-88879996999999999867666774289999546
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=40.92 Aligned_cols=179 Identities=16% Similarity=0.116 Sum_probs=108.8
Q ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEECCCEEEECCCCCEEEEEE--CCEEEEEECCCCEE
Q ss_conf 2199999610059886666069999976459999753899998862483189844468099996--89699997249814
Q 000548 1108 ETLLAIGTAYVQGEDVAARGRVLLFSTGRNADNPQNLVTEVYSKELKGAISALASLQGHLLIAS--GPKIILHKWTGTEL 1185 (1431)
Q Consensus 1108 ~~~ivVGT~~~~~E~~~~~Gri~vf~i~~~~~~~~~~l~~i~~~~~~G~V~al~~~~g~Ll~av--g~~i~i~~~~~~~L 1185 (1431)
..+++.|. .+.+.++++.. -+.+......+++++++--+.+|+++. ...+.+|++...++
T Consensus 418 ~~~~~~~~----------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~ 479 (615)
T 1pgu_A 418 GFTAVLTN----------DDDLLILQSFT--------GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEV 479 (615)
T ss_dssp SEEEEEET----------TSEEEEEETTT--------CCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEE
T ss_pred CCEEEEEC----------CCCEEEEECCC--------CCEEEECCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 87899967----------98269994467--------8665551567872077883888999656898699998888543
Q ss_pred EEEEEECCCCEEEEEEEE--ECCEEEEEECCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEEE----------CCCEE
Q ss_conf 446850599836999988--689999986355399999961156799965036872289889986----------09916
Q 000548 1186 NGIAFYDAPPLYVVSLNI--VKNFILLGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLI----------DGSTL 1253 (1431)
Q Consensus 1186 ~~~a~~~~~~~~i~~l~~--~~~~IlvGD~~~Sv~~l~~~~~~~~l~~~arD~~~~~vta~~fl~----------d~~~l 1253 (1431)
....+... ...|+++.. .+.++++|+.-..+.++ +....+....-...+...++++.|.. ++..
T Consensus 480 ~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw--~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~- 555 (615)
T 1pgu_A 480 SFDLKTPL-RAKPSYISISPSETYIAAGDVMGKILLY--DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL- 555 (615)
T ss_dssp EEECSSCC-SSCEEEEEECTTSSEEEEEETTSCEEEE--ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCE-
T ss_pred CCCCCCCC-CCCEEEEEECCCCCEEEECCCCCEEEEE--ECCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCE-
T ss_conf 53336776-5750799998999989981799859986--5777762467604788714699976832345332468888-
Q ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 99998078859999618998888457468999988518505688998620277888899999988886289997379848
Q 000548 1254 SLVVSDEQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLATSSDRTGAAPGSDKTNRFALLFGTLDGSI 1333 (1431)
Q Consensus 1254 ~ii~~D~~gNl~vl~~~p~~~~s~~g~~L~~~~~f~lg~~vt~~~~~~~~~~~~~~~~~~~g~~~~~~~~ii~~T~~GsI 1333 (1431)
++.+..+|.+.++..... .++.....-| .+.|+++. +.|. .. ++.++.+|.|
T Consensus 556 -l~~~~~dg~i~iw~~~~~-------~~~~~~~~~h-~~~v~~l~---~s~~---------------~~-l~s~~~d~~v 607 (615)
T 1pgu_A 556 -VATGSLDTNIFIYSVKRP-------MKIIKALNAH-KDGVNNLL---WETP---------------ST-LVSSGADACI 607 (615)
T ss_dssp -EEEEETTSCEEEEESSCT-------TCCEEETTSS-TTCEEEEE---EEET---------------TE-EEEEETTSCE
T ss_pred -EEEECCCCCEEEEECCCC-------CEECHHHHCC-CCCEEEEE---ECCC---------------CC-EEEECCCCEE
T ss_conf -999817971999977888-------5403113359-43058999---7389---------------97-2884599639
Q ss_pred EEE
Q ss_conf 999
Q 000548 1334 GCI 1336 (1431)
Q Consensus 1334 g~i 1336 (1431)
.+.
T Consensus 608 ~iw 610 (615)
T 1pgu_A 608 KRW 610 (615)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999
No 8
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=1.00 E-value=1 Score=40.90 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=8.3
Q ss_pred CEEEEEEECCEEEEEEE
Q ss_conf 09999960995999996
Q 000548 839 PFLFAILTDGTILCYQA 855 (1431)
Q Consensus 839 ~~L~vgl~~G~l~~y~~ 855 (1431)
.+|+++..+|.+..|.+
T Consensus 110 ~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDL 126 (337)
T ss_dssp SEEEEEESSSEEEEEEC
T ss_pred CEEEEECCCCCEEEEEC
T ss_conf 88999808996899878
No 9
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=1.00 E-value=1 Score=40.31 Aligned_cols=26 Identities=12% Similarity=0.378 Sum_probs=9.4
Q ss_pred CEEEEEEEECCCEEEEEEEECCCCEEEE
Q ss_conf 2898899860991699998078859999
Q 000548 1240 DCFATEFLIDGSTLSLVVSDEQKNIQIF 1267 (1431)
Q Consensus 1240 ~vta~~fl~d~~~l~ii~~D~~gNl~vl 1267 (1431)
.++++.|..+++. ++++..+|.+.++
T Consensus 308 ~v~~~~~s~~~~~--l~~~~~dg~i~iw 333 (337)
T 1gxr_A 308 SVLSCDISVDDKY--IVTGSGDKKATVY 333 (337)
T ss_dssp CEEEEEECTTSCE--EEEEETTSCEEEE
T ss_pred CEEEEEECCCCCE--EEEECCCCEEEEE
T ss_conf 2799999799989--9996499719999
No 10
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=1.00 E-value=1 Score=40.01 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=14.1
Q ss_pred EEEEEEECCCEEEEEECCCCCEEE
Q ss_conf 999999429859999889980568
Q 000548 752 IYSVVCYESGALEIFDVPNFNCVF 775 (1431)
Q Consensus 752 ~~l~v~~~~g~l~I~sLp~~~~v~ 775 (1431)
.+++.+..+|.+.+|.+...+.+.
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~ 109 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIK 109 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEE
T ss_pred CEEEEECCCCEEEEEECHHCEEEE
T ss_conf 789993689889999841060765
Done!