Query 000549
Match_columns 1431
No_of_seqs 337 out of 2254
Neff 6.5
Searched_HMMs 46136
Date Mon Apr 1 18:55:30 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 2E-103 4E-108 891.0 35.3 576 654-1430 175-790 (791)
2 KOG4439 RNA polymerase II tran 100.0 4.6E-87 9.9E-92 785.5 39.9 547 654-1431 316-901 (901)
3 KOG0385 Chromatin remodeling c 100.0 1.2E-85 2.6E-90 779.7 37.9 459 656-1411 159-623 (971)
4 KOG0387 Transcription-coupled 100.0 3.7E-83 8E-88 763.4 38.3 473 656-1431 198-699 (923)
5 KOG0384 Chromodomain-helicase 100.0 2.3E-82 5E-87 782.2 32.6 600 508-1429 242-856 (1373)
6 KOG0392 SNF2 family DNA-depend 100.0 5.1E-81 1.1E-85 765.0 38.3 505 661-1430 972-1495(1549)
7 KOG1001 Helicase-like transcri 100.0 5.1E-81 1.1E-85 774.8 30.6 556 647-1410 117-673 (674)
8 KOG0389 SNF2 family DNA-depend 100.0 3.4E-80 7.5E-85 736.6 34.4 494 663-1412 398-913 (941)
9 PLN03142 Probable chromatin-re 100.0 5E-79 1.1E-83 782.9 47.6 474 656-1430 162-641 (1033)
10 KOG0391 SNF2 family DNA-depend 100.0 2.4E-78 5.2E-83 730.3 34.1 582 655-1431 606-1429(1958)
11 KOG0388 SNF2 family DNA-depend 100.0 1E-75 2.2E-80 684.2 34.4 545 658-1413 561-1180(1185)
12 KOG0386 Chromatin remodeling c 100.0 3.5E-69 7.7E-74 655.1 19.5 461 654-1409 384-860 (1157)
13 KOG0390 DNA repair protein, SN 100.0 1.6E-66 3.5E-71 640.1 39.1 494 657-1430 231-748 (776)
14 KOG1015 Transcription regulato 100.0 2.2E-62 4.8E-67 584.7 32.8 595 662-1430 666-1317(1567)
15 COG0553 HepA Superfamily II DN 100.0 4.8E-61 1E-65 631.7 35.7 495 659-1430 333-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 9.9E-56 2.2E-60 519.1 25.5 585 662-1430 252-889 (1387)
17 KOG1000 Chromatin remodeling p 100.0 1.7E-52 3.6E-57 478.1 32.3 418 661-1407 195-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 5.8E-52 1.3E-56 532.3 35.1 420 661-1409 149-627 (956)
19 KOG0298 DEAD box-containing he 100.0 1.3E-50 2.8E-55 503.5 18.1 258 774-1076 419-691 (1394)
20 PF00176 SNF2_N: SNF2 family N 100.0 1E-42 2.3E-47 401.8 18.0 291 668-1076 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 2.5E-34 5.5E-39 359.1 36.3 115 1275-1395 495-615 (732)
22 KOG0383 Predicted helicase [Ge 100.0 2.3E-37 4.9E-42 379.9 8.8 398 663-1341 294-696 (696)
23 PRK13766 Hef nuclease; Provisi 100.0 2.4E-29 5.1E-34 328.0 41.2 125 1275-1404 364-496 (773)
24 COG1111 MPH1 ERCC4-like helica 99.9 3.1E-23 6.7E-28 242.6 34.9 458 663-1405 14-499 (542)
25 COG1061 SSL2 DNA or RNA helica 99.9 1.2E-22 2.5E-27 248.0 33.3 122 1275-1399 282-406 (442)
26 PHA02558 uvsW UvsW helicase; P 99.9 2.2E-22 4.7E-27 249.9 33.1 114 1275-1389 343-457 (501)
27 KOG1123 RNA polymerase II tran 99.9 4.7E-21 1E-25 220.8 22.4 112 1275-1392 542-658 (776)
28 PTZ00110 helicase; Provisional 99.8 6.9E-18 1.5E-22 211.4 30.8 109 1275-1387 376-484 (545)
29 PRK11776 ATP-dependent RNA hel 99.8 1.1E-17 2.4E-22 206.3 31.7 109 1275-1387 241-349 (460)
30 PRK11192 ATP-dependent RNA hel 99.8 2.1E-17 4.6E-22 202.3 29.2 104 1275-1380 244-347 (434)
31 KOG0354 DEAD-box like helicase 99.8 1.6E-16 3.5E-21 196.4 34.3 126 1275-1407 412-548 (746)
32 TIGR00614 recQ_fam ATP-depende 99.8 3.4E-17 7.4E-22 202.4 28.0 105 1275-1381 225-329 (470)
33 PLN00206 DEAD-box ATP-dependen 99.8 4.9E-17 1.1E-21 203.0 29.5 107 1277-1387 368-475 (518)
34 PRK04837 ATP-dependent RNA hel 99.8 4.4E-17 9.6E-22 198.9 28.2 107 1276-1386 255-361 (423)
35 PRK10590 ATP-dependent RNA hel 99.8 5.3E-17 1.1E-21 200.0 28.4 108 1276-1387 245-352 (456)
36 PRK04537 ATP-dependent RNA hel 99.8 1.1E-16 2.4E-21 201.5 29.1 108 1275-1386 256-363 (572)
37 PTZ00424 helicase 45; Provisio 99.8 1.3E-16 2.8E-21 193.2 28.0 108 1276-1387 267-374 (401)
38 PRK01297 ATP-dependent RNA hel 99.7 2.1E-16 4.6E-21 195.7 28.9 109 1275-1387 334-442 (475)
39 PRK11634 ATP-dependent RNA hel 99.7 5.9E-16 1.3E-20 196.2 32.2 100 1276-1377 245-344 (629)
40 PRK11057 ATP-dependent DNA hel 99.7 3E-16 6.6E-21 199.2 28.8 101 1275-1377 235-335 (607)
41 TIGR01389 recQ ATP-dependent D 99.7 3E-16 6.6E-21 199.2 28.3 102 1276-1379 224-325 (591)
42 TIGR00643 recG ATP-dependent D 99.7 1.8E-15 3.9E-20 193.0 30.6 78 1299-1378 481-559 (630)
43 PRK11448 hsdR type I restricti 99.7 1.6E-15 3.5E-20 200.9 28.6 105 1276-1383 698-814 (1123)
44 TIGR00580 mfd transcription-re 99.7 3.5E-15 7.7E-20 194.6 28.9 107 1276-1386 660-769 (926)
45 PRK10689 transcription-repair 99.7 4.9E-15 1.1E-19 197.0 29.1 101 1276-1378 809-912 (1147)
46 PRK10917 ATP-dependent DNA hel 99.7 6E-15 1.3E-19 189.5 28.9 81 1300-1384 505-586 (681)
47 PLN03137 ATP-dependent DNA hel 99.7 9.2E-15 2E-19 188.2 27.0 104 1276-1381 680-783 (1195)
48 KOG0331 ATP-dependent RNA heli 99.6 1.9E-14 4.1E-19 173.7 25.0 101 1275-1377 340-440 (519)
49 TIGR03817 DECH_helic helicase/ 99.6 1.4E-13 3.1E-18 177.8 29.5 115 1276-1394 271-393 (742)
50 PRK13767 ATP-dependent helicas 99.6 4.1E-13 8.9E-18 176.8 30.1 104 1276-1381 284-394 (876)
51 PRK02362 ski2-like helicase; P 99.6 3.1E-13 6.6E-18 175.9 27.5 81 1302-1384 305-394 (737)
52 TIGR00348 hsdR type I site-spe 99.5 9.1E-13 2E-17 168.9 27.6 108 1276-1385 514-649 (667)
53 PRK01172 ski2-like helicase; P 99.5 1.6E-12 3.5E-17 167.8 29.1 72 1303-1377 288-368 (674)
54 cd00079 HELICc Helicase superf 99.5 7.3E-14 1.6E-18 141.2 11.6 105 1275-1381 27-131 (131)
55 COG0513 SrmB Superfamily II DN 99.5 7.1E-12 1.5E-16 156.3 30.4 118 1277-1399 274-391 (513)
56 PRK00254 ski2-like helicase; P 99.5 4.4E-12 9.5E-17 164.8 28.7 84 1302-1387 297-388 (720)
57 TIGR01587 cas3_core CRISPR-ass 99.5 4.8E-12 1E-16 151.3 26.3 108 1275-1387 221-338 (358)
58 KOG0330 ATP-dependent RNA heli 99.4 8.3E-12 1.8E-16 142.6 21.3 123 1275-1401 299-423 (476)
59 COG1200 RecG RecG-like helicas 99.4 2.3E-11 4.9E-16 149.4 25.0 73 1300-1374 507-580 (677)
60 KOG0328 Predicted ATP-dependen 99.4 9.8E-12 2.1E-16 136.6 19.4 108 1277-1388 267-374 (400)
61 PRK09200 preprotein translocas 99.4 7.6E-11 1.6E-15 150.7 30.7 113 1275-1396 427-547 (790)
62 TIGR03714 secA2 accessory Sec 99.4 1.9E-11 4.1E-16 154.8 24.5 98 1275-1377 423-529 (762)
63 PF04851 ResIII: Type III rest 99.4 8.1E-13 1.8E-17 141.4 10.0 167 663-943 2-183 (184)
64 PF00271 Helicase_C: Helicase 99.4 4.2E-13 9.1E-18 124.7 6.4 78 1294-1373 1-78 (78)
65 PRK12898 secA preprotein trans 99.4 1.5E-10 3.2E-15 145.3 29.6 113 1275-1396 472-592 (656)
66 TIGR02621 cas3_GSU0051 CRISPR- 99.4 2.4E-10 5.2E-15 146.3 31.4 103 1275-1383 271-390 (844)
67 smart00487 DEXDc DEAD-like hel 99.3 7.7E-12 1.7E-16 134.0 13.2 167 663-951 7-179 (201)
68 COG4096 HsdR Type I site-speci 99.3 9.5E-11 2.1E-15 145.5 23.4 107 1276-1384 426-545 (875)
69 PRK05580 primosome assembly pr 99.3 2.1E-10 4.6E-15 147.5 26.8 94 1289-1384 439-548 (679)
70 KOG0350 DEAD-box ATP-dependent 99.3 1.3E-10 2.8E-15 136.4 21.8 108 1275-1386 428-539 (620)
71 TIGR00963 secA preprotein tran 99.3 1.2E-11 2.6E-16 155.7 14.1 101 1275-1379 404-511 (745)
72 PHA02653 RNA helicase NPH-II; 99.3 1.9E-09 4.1E-14 137.2 33.1 110 1276-1391 395-518 (675)
73 TIGR03158 cas3_cyano CRISPR-as 99.3 5.2E-10 1.1E-14 134.0 26.0 85 1275-1370 271-357 (357)
74 KOG0333 U5 snRNP-like RNA heli 99.3 2.4E-10 5.2E-15 134.7 21.3 110 1276-1388 517-626 (673)
75 smart00490 HELICc helicase sup 99.2 1.3E-11 2.8E-16 114.3 7.5 81 1291-1373 2-82 (82)
76 cd00046 DEXDc DEAD-like helica 99.2 4.9E-11 1.1E-15 120.2 12.0 137 688-942 2-144 (144)
77 PRK09401 reverse gyrase; Revie 99.2 1.1E-09 2.5E-14 146.8 27.9 90 1277-1372 329-431 (1176)
78 KOG0335 ATP-dependent RNA heli 99.2 9E-10 2E-14 131.7 23.1 105 1275-1381 336-440 (482)
79 COG1201 Lhr Lhr-like helicases 99.2 1.6E-09 3.5E-14 138.1 25.2 119 1277-1401 254-374 (814)
80 PRK09751 putative ATP-dependen 99.2 2E-09 4.3E-14 145.1 25.4 95 1276-1372 244-371 (1490)
81 KOG0336 ATP-dependent RNA heli 99.1 1.9E-09 4.1E-14 123.6 20.0 110 1275-1387 464-573 (629)
82 KOG4284 DEAD box protein [Tran 99.1 2E-09 4.4E-14 129.0 20.9 108 1277-1387 273-380 (980)
83 TIGR00595 priA primosomal prot 99.1 5.9E-09 1.3E-13 129.9 25.6 95 1290-1386 272-382 (505)
84 COG1205 Distinct helicase fami 99.1 4.6E-09 9.9E-14 137.2 23.3 118 1275-1396 305-431 (851)
85 TIGR01054 rgy reverse gyrase. 99.1 6.4E-09 1.4E-13 139.8 25.0 75 1277-1356 327-408 (1171)
86 KOG0348 ATP-dependent RNA heli 99.1 2.8E-09 6E-14 126.1 17.8 97 1300-1402 471-567 (708)
87 PRK13104 secA preprotein trans 99.1 8E-09 1.7E-13 132.2 23.2 113 1275-1396 443-593 (896)
88 COG0514 RecQ Superfamily II DN 99.1 1E-08 2.2E-13 126.8 23.4 103 1276-1380 230-332 (590)
89 TIGR01970 DEAH_box_HrpB ATP-de 99.1 1.4E-08 3.1E-13 132.1 26.0 107 1277-1388 210-337 (819)
90 KOG0343 RNA Helicase [RNA proc 99.1 1.2E-08 2.5E-13 121.3 22.2 122 1275-1401 312-435 (758)
91 KOG0342 ATP-dependent RNA heli 99.0 1.1E-08 2.3E-13 120.8 21.1 99 1277-1377 331-429 (543)
92 COG1204 Superfamily II helicas 99.0 1.4E-08 2.9E-13 131.2 21.5 81 1290-1375 307-396 (766)
93 PRK12906 secA preprotein trans 99.0 1.2E-08 2.6E-13 130.1 20.2 100 1275-1378 439-546 (796)
94 PRK09694 helicase Cas3; Provis 99.0 1.2E-07 2.7E-12 123.7 29.8 98 1275-1375 559-665 (878)
95 PRK14701 reverse gyrase; Provi 99.0 5E-08 1.1E-12 134.0 27.3 94 1276-1375 330-446 (1638)
96 KOG0339 ATP-dependent RNA heli 99.0 5.7E-08 1.2E-12 114.4 23.0 111 1276-1390 468-578 (731)
97 PRK11664 ATP-dependent RNA hel 99.0 6.8E-08 1.5E-12 126.1 26.5 109 1276-1389 212-341 (812)
98 COG1202 Superfamily II helicas 99.0 2.7E-08 5.9E-13 118.6 19.6 118 1277-1397 441-572 (830)
99 COG1197 Mfd Transcription-repa 98.9 1.8E-07 3.9E-12 121.4 27.9 94 1301-1398 830-929 (1139)
100 KOG0338 ATP-dependent RNA heli 98.9 2E-08 4.4E-13 118.3 16.6 97 1277-1375 427-523 (691)
101 PRK12904 preprotein translocas 98.9 1.8E-07 3.8E-12 120.1 25.7 112 1275-1395 429-578 (830)
102 COG4889 Predicted helicase [Ge 98.9 2.6E-08 5.6E-13 122.6 15.7 76 1300-1376 499-576 (1518)
103 PRK13107 preprotein translocas 98.8 2E-07 4.4E-12 119.4 22.7 113 1275-1396 448-597 (908)
104 cd00268 DEADc DEAD-box helicas 98.8 3E-08 6.6E-13 108.8 13.0 109 664-836 21-132 (203)
105 PRK12900 secA preprotein trans 98.7 3.6E-06 7.7E-11 108.6 30.0 114 1275-1397 597-718 (1025)
106 KOG0332 ATP-dependent RNA heli 98.6 2.6E-07 5.6E-12 106.0 11.4 110 1277-1390 331-447 (477)
107 PRK11131 ATP-dependent RNA hel 98.6 6.8E-06 1.5E-10 110.1 26.2 108 1276-1390 286-414 (1294)
108 PF13872 AAA_34: P-loop contai 98.6 1.4E-06 3.1E-11 99.9 17.1 246 665-1034 38-302 (303)
109 PF00270 DEAD: DEAD/DEAH box h 98.6 3.8E-07 8.2E-12 96.7 11.6 158 667-949 2-168 (169)
110 TIGR01967 DEAH_box_HrpA ATP-de 98.5 6.3E-06 1.4E-10 110.7 25.0 108 1276-1390 279-407 (1283)
111 KOG0341 DEAD-box protein abstr 98.5 3.1E-07 6.7E-12 105.2 9.9 125 1275-1403 420-548 (610)
112 KOG0334 RNA helicase [RNA proc 98.5 3.3E-06 7.1E-11 108.2 19.2 107 1276-1386 613-719 (997)
113 KOG0952 DNA/RNA helicase MER3/ 98.5 1E-05 2.3E-10 103.0 23.2 83 1306-1390 402-494 (1230)
114 KOG1513 Nuclear helicase MOP-3 98.5 1.8E-05 3.8E-10 97.6 23.5 87 1319-1407 850-944 (1300)
115 TIGR00631 uvrb excinuclease AB 98.4 1.4E-06 3E-11 111.6 14.1 117 1275-1396 441-564 (655)
116 PF11496 HDA2-3: Class II hist 98.4 7.7E-06 1.7E-10 95.3 18.2 124 1275-1399 116-257 (297)
117 PRK12326 preprotein translocas 98.4 2.9E-05 6.3E-10 98.0 24.0 114 1275-1397 426-554 (764)
118 COG1203 CRISPR-associated heli 98.4 4.4E-05 9.5E-10 99.9 25.4 127 1275-1405 439-570 (733)
119 PRK05298 excinuclease ABC subu 98.3 5.6E-06 1.2E-10 106.6 16.0 107 1275-1386 445-556 (652)
120 KOG0326 ATP-dependent RNA heli 98.3 6.3E-07 1.4E-11 100.9 4.6 98 1277-1376 323-420 (459)
121 COG0556 UvrB Helicase subunit 98.3 0.0017 3.7E-08 78.6 33.1 123 1275-1400 445-572 (663)
122 PF13871 Helicase_C_4: Helicas 98.2 2.1E-06 4.6E-11 98.2 7.3 94 1317-1412 52-153 (278)
123 TIGR00596 rad1 DNA repair prot 98.2 0.00021 4.6E-09 93.3 26.3 52 1348-1402 478-529 (814)
124 KOG0340 ATP-dependent RNA heli 98.2 6.7E-06 1.5E-10 94.3 9.9 101 1275-1377 253-353 (442)
125 PRK12899 secA preprotein trans 98.1 0.0012 2.5E-08 86.0 30.3 111 1275-1396 567-687 (970)
126 KOG0345 ATP-dependent RNA heli 98.1 1.2E-05 2.7E-10 95.0 11.1 104 1275-1380 254-359 (567)
127 COG4098 comFA Superfamily II D 98.1 0.0037 8.1E-08 72.2 29.9 95 1275-1373 304-402 (441)
128 PRK13103 secA preprotein trans 98.1 0.00015 3.3E-09 93.7 20.7 113 1275-1396 448-597 (913)
129 KOG0344 ATP-dependent RNA heli 98.0 2.6E-05 5.7E-10 94.9 11.6 102 1278-1381 389-492 (593)
130 KOG0327 Translation initiation 98.0 1.1E-05 2.4E-10 93.8 7.6 107 1277-1387 264-370 (397)
131 PRK12903 secA preprotein trans 97.9 0.00065 1.4E-08 87.3 22.7 113 1275-1396 425-545 (925)
132 COG1198 PriA Primosomal protei 97.8 0.0016 3.5E-08 83.8 22.2 96 1290-1387 494-605 (730)
133 KOG0951 RNA helicase BRR2, DEA 97.8 0.0011 2.5E-08 86.2 20.5 72 1300-1374 607-689 (1674)
134 KOG0947 Cytoplasmic exosomal R 97.6 0.0011 2.4E-08 84.4 17.4 81 1305-1388 635-723 (1248)
135 COG1110 Reverse gyrase [DNA re 97.6 0.002 4.3E-08 83.1 19.6 75 1276-1356 335-416 (1187)
136 KOG0949 Predicted helicase, DE 97.5 0.018 3.9E-07 74.0 24.3 69 1306-1376 968-1037(1330)
137 KOG0349 Putative DEAD-box RNA 97.4 0.00028 6E-09 82.5 7.8 96 1275-1372 504-602 (725)
138 KOG0347 RNA helicase [RNA proc 97.4 0.00019 4.1E-09 86.5 6.0 130 1275-1407 462-611 (731)
139 KOG0823 Predicted E3 ubiquitin 97.3 0.0001 2.2E-09 80.9 2.2 56 1109-1166 45-102 (230)
140 KOG0351 ATP-dependent DNA heli 97.2 0.00061 1.3E-08 89.8 8.3 105 1275-1381 484-588 (941)
141 KOG0953 Mitochondrial RNA heli 97.2 0.0011 2.3E-08 80.5 9.5 107 1275-1385 357-475 (700)
142 KOG0346 RNA helicase [RNA proc 97.2 0.0005 1.1E-08 81.2 6.4 109 1276-1387 268-410 (569)
143 PRK15483 type III restriction- 97.2 0.0028 6.1E-08 83.3 13.4 37 907-944 204-240 (986)
144 PRK12901 secA preprotein trans 97.2 0.11 2.4E-06 68.6 27.3 112 1275-1395 627-746 (1112)
145 PLN03208 E3 ubiquitin-protein 97.1 0.00022 4.9E-09 77.0 2.4 52 1111-1164 18-84 (193)
146 PF07652 Flavi_DEAD: Flaviviru 97.1 0.0034 7.3E-08 65.4 10.8 42 901-943 92-137 (148)
147 PF13923 zf-C3HC4_2: Zinc fing 97.0 0.00034 7.3E-09 56.7 1.4 37 1114-1151 1-38 (39)
148 KOG0320 Predicted E3 ubiquitin 96.9 0.00036 7.7E-09 73.5 1.5 50 1110-1162 130-181 (187)
149 KOG0948 Nuclear exosomal RNA h 96.9 0.036 7.9E-07 69.6 18.5 83 1306-1391 452-542 (1041)
150 KOG0978 E3 ubiquitin ligase in 96.8 0.00037 8.1E-09 87.7 1.3 49 1113-1163 645-693 (698)
151 KOG0317 Predicted E3 ubiquitin 96.8 0.00045 9.7E-09 78.0 1.7 49 1112-1163 240-288 (293)
152 smart00504 Ubox Modified RING 96.8 0.00053 1.1E-08 61.2 1.8 47 1113-1162 3-49 (63)
153 COG0610 Type I site-specific r 96.8 0.0058 1.3E-07 82.1 11.9 68 1315-1384 580-650 (962)
154 PF15227 zf-C3HC4_4: zinc fing 96.8 0.00074 1.6E-08 55.8 2.0 33 1114-1146 1-33 (42)
155 CHL00122 secA preprotein trans 96.8 0.14 3.1E-06 66.9 23.2 66 1275-1343 423-489 (870)
156 KOG0337 ATP-dependent RNA heli 96.5 0.0048 1E-07 72.9 6.9 99 1276-1376 261-359 (529)
157 PF00097 zf-C3HC4: Zinc finger 96.3 0.0019 4.2E-08 52.6 1.8 37 1114-1150 1-39 (41)
158 KOG2164 Predicted E3 ubiquitin 96.2 0.0023 4.9E-08 77.4 2.0 53 1111-1163 186-240 (513)
159 KOG0352 ATP-dependent DNA heli 96.0 0.014 3E-07 69.0 7.3 103 1277-1381 256-358 (641)
160 PF13445 zf-RING_UBOX: RING-ty 96.0 0.0024 5.2E-08 53.0 0.6 36 1114-1150 1-43 (43)
161 PF13920 zf-C3HC4_3: Zinc fing 95.9 0.0047 1E-07 52.8 2.2 44 1112-1158 3-47 (50)
162 PF13086 AAA_11: AAA domain; P 95.8 0.17 3.8E-06 56.0 15.1 39 665-710 2-41 (236)
163 TIGR00599 rad18 DNA repair pro 95.8 0.0047 1E-07 74.4 2.2 47 1111-1160 26-72 (397)
164 PHA02929 N1R/p28-like protein; 95.7 0.0081 1.7E-07 67.8 3.8 46 1111-1159 174-227 (238)
165 COG4581 Superfamily II RNA hel 95.7 0.053 1.1E-06 72.0 11.7 168 657-957 112-283 (1041)
166 COG5574 PEX10 RING-finger-cont 95.5 0.0051 1.1E-07 68.8 1.3 49 1112-1162 216-265 (271)
167 smart00184 RING Ring finger. E 95.5 0.0072 1.6E-07 47.4 1.8 37 1114-1150 1-37 (39)
168 TIGR01407 dinG_rel DnaQ family 95.0 0.14 3E-06 68.9 12.6 100 1275-1379 673-808 (850)
169 PF13639 zf-RING_2: Ring finge 94.8 0.014 3.1E-07 48.4 1.6 38 1113-1151 2-42 (44)
170 KOG1802 RNA helicase nonsense 94.8 0.094 2E-06 65.4 8.9 81 664-816 410-491 (935)
171 cd00162 RING RING-finger (Real 94.6 0.02 4.2E-07 46.7 1.9 42 1113-1156 1-43 (45)
172 PF04564 U-box: U-box domain; 94.5 0.018 3.9E-07 53.4 1.5 47 1112-1160 5-51 (73)
173 TIGR03117 cas_csf4 CRISPR-asso 94.3 0.28 6E-06 63.2 12.2 81 1275-1360 470-564 (636)
174 PHA02926 zinc finger-like prot 94.3 0.022 4.8E-07 62.5 2.1 47 1111-1159 170-230 (242)
175 PF14634 zf-RING_5: zinc-RING 94.2 0.028 6E-07 46.8 1.9 37 1114-1151 2-41 (44)
176 TIGR00570 cdk7 CDK-activating 94.0 0.034 7.5E-07 64.6 3.0 49 1112-1162 4-57 (309)
177 PF02562 PhoH: PhoH-like prote 93.9 0.15 3.2E-06 56.8 7.5 43 904-948 119-161 (205)
178 PRK10536 hypothetical protein; 93.6 0.36 7.7E-06 55.5 10.0 40 906-947 178-217 (262)
179 PF11789 zf-Nse: Zinc-finger o 93.5 0.034 7.3E-07 49.1 1.3 45 1111-1155 11-57 (57)
180 KOG0287 Postreplication repair 93.4 0.022 4.7E-07 65.3 -0.1 45 1112-1159 24-68 (442)
181 PF14835 zf-RING_6: zf-RING of 93.0 0.069 1.5E-06 47.8 2.5 43 1111-1158 7-50 (65)
182 PF13307 Helicase_C_2: Helicas 92.8 0.28 6E-06 52.8 7.3 98 1275-1378 8-143 (167)
183 COG3587 Restriction endonuclea 92.7 0.24 5.2E-06 63.8 7.5 35 907-942 208-242 (985)
184 TIGR01407 dinG_rel DnaQ family 92.6 0.37 7.9E-06 64.9 9.7 42 663-707 244-285 (850)
185 COG5432 RAD18 RING-finger-cont 92.4 0.054 1.2E-06 61.0 1.2 38 1112-1150 26-63 (391)
186 COG0653 SecA Preprotein transl 92.2 15 0.00032 48.8 22.5 96 1275-1374 428-534 (822)
187 KOG0824 Predicted E3 ubiquitin 91.9 0.085 1.8E-06 60.3 2.0 57 1111-1169 7-63 (324)
188 COG1199 DinG Rad3-related DNA 91.7 0.75 1.6E-05 60.2 10.8 102 1275-1380 478-612 (654)
189 KOG1132 Helicase of the DEAD s 91.3 0.84 1.8E-05 59.2 10.1 85 1275-1360 560-659 (945)
190 smart00492 HELICc3 helicase su 90.4 1.2 2.6E-05 46.8 8.7 71 1288-1360 3-83 (141)
191 KOG0311 Predicted E3 ubiquitin 89.8 0.042 9E-07 63.9 -2.9 46 1112-1159 44-90 (381)
192 TIGR00376 DNA helicase, putati 89.7 4.1 8.9E-05 53.2 14.6 41 663-709 156-196 (637)
193 PRK08074 bifunctional ATP-depe 89.3 1.2 2.5E-05 60.7 9.7 103 1275-1379 751-887 (928)
194 KOG0353 ATP-dependent DNA heli 89.1 0.5 1.1E-05 55.3 5.0 89 1275-1365 316-404 (695)
195 KOG4172 Predicted E3 ubiquitin 89.1 0.13 2.8E-06 44.2 0.2 48 1109-1158 5-53 (62)
196 PRK14873 primosome assembly pr 88.7 0.99 2.1E-05 58.9 8.0 57 776-835 189-252 (665)
197 PRK07246 bifunctional ATP-depe 88.7 2.7 5.9E-05 56.4 12.2 99 1275-1378 646-776 (820)
198 PRK12902 secA preprotein trans 88.3 2.1 4.5E-05 56.6 10.3 47 1275-1321 438-485 (939)
199 KOG2879 Predicted E3 ubiquitin 87.9 0.3 6.5E-06 55.3 2.2 47 1109-1157 237-285 (298)
200 PF13604 AAA_30: AAA domain; P 87.8 4.7 0.0001 44.6 11.6 39 905-945 94-133 (196)
201 KOG1785 Tyrosine kinase negati 87.8 0.32 7E-06 57.1 2.4 50 1107-1158 365-415 (563)
202 KOG0347 RNA helicase [RNA proc 87.6 0.9 2E-05 56.1 6.1 57 778-835 266-325 (731)
203 COG5220 TFB3 Cdk activating ki 87.1 0.19 4.1E-06 55.4 0.1 51 1112-1162 11-67 (314)
204 TIGR00604 rad3 DNA repair heli 86.8 2.2 4.7E-05 56.5 9.7 103 1275-1378 521-667 (705)
205 KOG2177 Predicted E3 ubiquitin 86.3 0.28 6E-06 56.6 0.9 43 1110-1155 12-54 (386)
206 COG5152 Uncharacterized conser 85.5 0.31 6.8E-06 52.3 0.7 36 1110-1145 195-230 (259)
207 COG5540 RING-finger-containing 85.4 0.34 7.3E-06 55.4 0.9 45 1112-1158 324-371 (374)
208 KOG0353 ATP-dependent DNA heli 85.2 2.8 6.1E-05 49.3 8.2 56 900-955 211-273 (695)
209 PRK11747 dinG ATP-dependent DN 84.9 3.6 7.7E-05 54.4 10.1 78 1277-1359 535-619 (697)
210 COG5222 Uncharacterized conser 84.8 0.41 8.9E-06 54.2 1.2 43 1112-1156 275-318 (427)
211 smart00491 HELICc2 helicase su 84.6 3 6.6E-05 43.8 7.6 71 1288-1360 3-84 (142)
212 KOG4150 Predicted ATP-dependen 84.5 4.1 9E-05 50.5 9.4 97 1275-1373 524-628 (1034)
213 KOG0340 ATP-dependent RNA heli 83.9 7.7 0.00017 46.1 10.9 58 778-836 78-138 (442)
214 KOG0345 ATP-dependent RNA heli 83.9 7.7 0.00017 47.7 11.2 59 777-835 81-143 (567)
215 PF07517 SecA_DEAD: SecA DEAD- 83.6 3.6 7.7E-05 47.9 8.2 101 662-836 75-179 (266)
216 PRK10875 recD exonuclease V su 83.1 8.9 0.00019 49.8 12.3 42 903-946 264-305 (615)
217 PF09848 DUF2075: Uncharacteri 82.7 4.9 0.00011 48.6 9.3 16 903-918 82-97 (352)
218 KOG1803 DNA helicase [Replicat 82.5 0.49 1.1E-05 59.2 0.7 44 660-709 181-224 (649)
219 PRK07246 bifunctional ATP-depe 82.1 6.4 0.00014 52.9 10.9 40 663-705 244-283 (820)
220 PF06862 DUF1253: Protein of u 82.1 11 0.00025 46.7 12.1 125 1275-1400 299-430 (442)
221 TIGR01447 recD exodeoxyribonuc 81.0 10 0.00022 49.1 11.7 41 904-946 259-299 (586)
222 PRK08074 bifunctional ATP-depe 80.9 9.1 0.0002 52.3 11.8 39 663-704 256-294 (928)
223 PF02399 Herpes_ori_bp: Origin 79.8 6.6 0.00014 51.6 9.4 98 1275-1381 281-384 (824)
224 TIGR01448 recD_rel helicase, p 79.2 11 0.00024 50.0 11.5 41 904-946 416-456 (720)
225 KOG1814 Predicted E3 ubiquitin 78.7 1.3 2.9E-05 52.8 2.6 58 1102-1159 175-242 (445)
226 PF12678 zf-rbx1: RING-H2 zinc 78.6 1.2 2.7E-05 41.3 1.9 39 1112-1151 20-71 (73)
227 KOG2660 Locus-specific chromos 78.3 0.67 1.5E-05 54.0 -0.0 45 1112-1159 16-61 (331)
228 PF02399 Herpes_ori_bp: Origin 78.0 13 0.00028 49.0 11.1 38 905-942 143-190 (824)
229 KOG1813 Predicted E3 ubiquitin 77.8 1.2 2.5E-05 51.3 1.7 44 1111-1157 241-284 (313)
230 KOG4628 Predicted E3 ubiquitin 76.7 1.3 2.8E-05 52.8 1.7 48 1112-1161 230-280 (348)
231 KOG4159 Predicted E3 ubiquitin 76.6 1.2 2.6E-05 54.3 1.4 47 1110-1159 83-129 (398)
232 KOG0802 E3 ubiquitin ligase [P 75.3 1 2.3E-05 57.5 0.5 49 1110-1161 290-343 (543)
233 PF06733 DEAD_2: DEAD_2; Inte 74.0 1.9 4E-05 46.7 1.9 17 820-836 116-132 (174)
234 KOG0344 ATP-dependent RNA heli 73.9 2.7 5.8E-05 52.7 3.5 35 666-707 160-194 (593)
235 KOG4692 Predicted E3 ubiquitin 73.8 1.6 3.5E-05 50.8 1.5 35 1112-1146 423-457 (489)
236 PRK07003 DNA polymerase III su 73.5 37 0.00081 44.9 13.5 57 904-962 119-178 (830)
237 KOG0922 DEAH-box RNA helicase 72.8 14 0.0003 47.4 9.2 112 1275-1389 257-392 (674)
238 KOG0329 ATP-dependent RNA heli 72.4 2.1 4.5E-05 48.3 1.8 45 1332-1376 302-346 (387)
239 PF05876 Terminase_GpA: Phage 71.9 19 0.00042 46.4 10.6 50 655-709 7-56 (557)
240 KOG3800 Predicted E3 ubiquitin 70.3 2.4 5.2E-05 48.8 1.8 48 1113-1162 2-54 (300)
241 KOG1805 DNA replication helica 68.9 32 0.00069 46.0 11.4 39 664-708 669-707 (1100)
242 KOG0297 TNF receptor-associate 68.6 2.6 5.6E-05 51.8 1.7 45 1112-1159 22-67 (391)
243 KOG0922 DEAH-box RNA helicase 65.1 25 0.00053 45.3 9.2 46 904-953 163-216 (674)
244 PF14447 Prok-RING_4: Prokaryo 65.1 3.5 7.6E-05 36.1 1.4 44 1112-1160 8-51 (55)
245 PF13401 AAA_22: AAA domain; P 64.8 4.8 0.0001 40.6 2.6 35 906-942 89-125 (131)
246 PHA02533 17 large terminase pr 64.3 73 0.0016 41.0 13.4 42 661-709 56-97 (534)
247 TIGR00631 uvrb excinuclease AB 61.6 34 0.00073 45.1 10.0 68 667-800 12-80 (655)
248 COG1643 HrpA HrpA-like helicas 60.4 40 0.00088 45.3 10.4 20 688-707 67-86 (845)
249 KOG1133 Helicase of the DEAD s 60.4 3.1 6.7E-05 53.0 0.3 81 1277-1358 630-721 (821)
250 smart00489 DEXDc3 DEAD-like he 60.4 5 0.00011 47.3 2.0 41 665-708 9-49 (289)
251 smart00488 DEXDc2 DEAD-like he 60.4 5 0.00011 47.3 2.0 41 665-708 9-49 (289)
252 KOG0828 Predicted E3 ubiquitin 58.2 4.2 9.1E-05 49.6 0.9 46 1111-1158 571-633 (636)
253 KOG4739 Uncharacterized protei 58.1 4.7 0.0001 45.6 1.2 45 1112-1161 4-50 (233)
254 TIGR02562 cas3_yersinia CRISPR 58.1 2.3E+02 0.005 39.2 16.5 44 664-707 408-452 (1110)
255 PRK14960 DNA polymerase III su 57.5 1.2E+02 0.0026 39.9 13.5 39 668-709 22-60 (702)
256 KOG3039 Uncharacterized conser 57.1 5.1 0.00011 45.0 1.2 32 1112-1143 44-75 (303)
257 PF12340 DUF3638: Protein of u 56.4 38 0.00083 38.6 8.0 43 663-709 22-64 (229)
258 KOG0826 Predicted E3 ubiquitin 55.9 4.9 0.00011 47.0 0.9 46 1111-1157 300-346 (357)
259 PRK14956 DNA polymerase III su 55.4 1.4E+02 0.0029 38.0 13.2 49 904-954 121-172 (484)
260 PRK14958 DNA polymerase III su 54.5 1.6E+02 0.0034 37.8 14.0 57 904-962 119-178 (509)
261 TIGR02881 spore_V_K stage V sp 54.5 32 0.00069 39.8 7.3 19 689-707 45-63 (261)
262 KOG1039 Predicted E3 ubiquitin 52.5 6.6 0.00014 47.1 1.3 45 1111-1157 161-219 (344)
263 KOG4265 Predicted E3 ubiquitin 51.6 6.2 0.00013 46.9 0.8 46 1111-1159 290-336 (349)
264 PRK14961 DNA polymerase III su 51.2 1.1E+02 0.0023 37.3 11.4 21 689-709 41-61 (363)
265 KOG0329 ATP-dependent RNA heli 51.2 37 0.0008 38.8 6.6 60 777-836 112-174 (387)
266 KOG0924 mRNA splicing factor A 50.1 29 0.00064 44.5 6.2 105 1288-1395 579-705 (1042)
267 PRK11747 dinG ATP-dependent DN 50.0 11 0.00024 49.9 2.8 42 663-704 24-67 (697)
268 PRK14949 DNA polymerase III su 49.8 1.8E+02 0.004 39.5 13.7 40 904-945 119-161 (944)
269 PF13607 Succ_CoA_lig: Succiny 49.3 68 0.0015 33.7 8.0 85 1278-1383 3-89 (138)
270 PRK12902 secA preprotein trans 47.9 1.4E+02 0.0031 40.4 12.1 102 661-836 82-187 (939)
271 COG1643 HrpA HrpA-like helicas 46.8 55 0.0012 44.1 8.4 112 1276-1390 259-390 (845)
272 PF13177 DNA_pol3_delta2: DNA 45.7 4.1E+02 0.0088 28.4 13.7 43 669-711 2-44 (162)
273 TIGR03420 DnaA_homol_Hda DnaA 44.7 1.9E+02 0.004 32.2 11.3 21 687-707 39-59 (226)
274 KOG0346 RNA helicase [RNA proc 44.6 31 0.00067 42.4 5.0 60 778-837 96-159 (569)
275 KOG1571 Predicted E3 ubiquitin 44.5 8.6 0.00019 45.8 0.5 44 1110-1159 304-347 (355)
276 PRK14962 DNA polymerase III su 43.7 2E+02 0.0042 36.6 12.3 40 667-709 20-59 (472)
277 TIGR03117 cas_csf4 CRISPR-asso 43.5 89 0.0019 41.0 9.4 40 776-815 47-89 (636)
278 KOG0920 ATP-dependent RNA heli 42.6 47 0.001 44.9 6.8 109 1275-1389 412-546 (924)
279 KOG2817 Predicted E3 ubiquitin 42.6 13 0.00027 44.9 1.5 47 1110-1158 333-384 (394)
280 PHA02544 44 clamp loader, smal 42.2 3.2E+02 0.0069 32.2 13.4 39 906-944 102-142 (316)
281 KOG0337 ATP-dependent RNA heli 41.8 38 0.00081 41.5 5.2 108 777-942 92-205 (529)
282 KOG0950 DNA polymerase theta/e 41.7 28 0.00061 46.4 4.5 107 1302-1413 524-636 (1008)
283 PRK08691 DNA polymerase III su 41.6 3.2E+02 0.0069 36.4 13.8 50 904-955 119-171 (709)
284 PRK07994 DNA polymerase III su 41.4 2.9E+02 0.0063 36.5 13.5 51 1372-1430 584-636 (647)
285 PF12861 zf-Apc11: Anaphase-pr 40.8 21 0.00046 34.3 2.4 43 1114-1158 35-81 (85)
286 KOG1645 RING-finger-containing 40.4 10 0.00022 45.6 0.3 58 1111-1170 4-67 (463)
287 KOG1812 Predicted E3 ubiquitin 39.7 15 0.00033 45.0 1.7 53 1111-1163 146-207 (384)
288 TIGR02880 cbbX_cfxQ probable R 39.4 54 0.0012 38.6 6.1 21 688-708 60-80 (284)
289 PRK10917 ATP-dependent DNA hel 39.2 1.3E+02 0.0029 39.8 10.3 77 1275-1352 309-389 (681)
290 PRK05298 excinuclease ABC subu 38.4 1.4E+02 0.0031 39.4 10.3 71 663-799 11-82 (652)
291 PRK05580 primosome assembly pr 38.0 1.7E+02 0.0037 38.9 11.0 77 1275-1354 189-266 (679)
292 cd03028 GRX_PICOT_like Glutare 37.9 1E+02 0.0022 29.6 6.7 59 1275-1334 6-70 (90)
293 KOG2932 E3 ubiquitin ligase in 37.8 16 0.00035 42.5 1.3 44 1110-1158 89-133 (389)
294 TIGR02768 TraA_Ti Ti-type conj 37.5 2.1E+02 0.0045 38.5 11.8 39 663-707 351-389 (744)
295 PRK09112 DNA polymerase III su 37.5 1.2E+02 0.0027 36.8 8.8 42 669-710 28-69 (351)
296 PF04641 Rtf2: Rtf2 RING-finge 37.4 21 0.00046 41.4 2.3 49 1111-1163 113-165 (260)
297 KOG0950 DNA polymerase theta/e 37.3 86 0.0019 42.2 7.7 56 777-835 271-327 (1008)
298 cd03418 GRX_GRXb_1_3_like Glut 37.1 1.3E+02 0.0029 27.1 7.2 57 1278-1334 1-58 (75)
299 TIGR00595 priA primosomal prot 36.8 1.8E+02 0.0038 37.3 10.5 77 1275-1354 24-101 (505)
300 KOG0951 RNA helicase BRR2, DEA 36.6 1.5E+02 0.0033 41.2 9.8 55 776-835 1187-1246(1674)
301 TIGR00365 monothiol glutaredox 36.5 1.1E+02 0.0023 30.1 6.7 58 1275-1332 10-73 (97)
302 COG0464 SpoVK ATPases of the A 36.5 65 0.0014 40.9 6.6 44 665-708 250-298 (494)
303 KOG3039 Uncharacterized conser 36.0 17 0.00036 41.0 1.1 38 1112-1150 222-263 (303)
304 PRK08084 DNA replication initi 35.7 2.6E+02 0.0056 31.9 10.7 36 906-941 99-139 (235)
305 PF13173 AAA_14: AAA domain 35.6 39 0.00084 34.4 3.7 39 906-945 63-101 (128)
306 PRK14969 DNA polymerase III su 35.2 2.5E+02 0.0055 36.1 11.5 40 667-709 22-61 (527)
307 KOG1734 Predicted RING-contain 34.0 16 0.00034 41.8 0.5 52 1112-1165 225-287 (328)
308 COG4581 Superfamily II RNA hel 33.7 1.1E+02 0.0024 42.0 8.2 80 1305-1386 449-536 (1041)
309 PRK14964 DNA polymerase III su 33.5 4E+02 0.0087 34.0 12.7 38 668-708 20-57 (491)
310 PRK14959 DNA polymerase III su 32.9 5.2E+02 0.011 34.0 13.7 40 667-709 22-61 (624)
311 TIGR00604 rad3 DNA repair heli 32.3 56 0.0012 43.5 5.2 43 664-709 10-52 (705)
312 smart00488 DEXDc2 DEAD-like he 31.5 72 0.0016 37.6 5.5 16 821-836 209-224 (289)
313 smart00489 DEXDc3 DEAD-like he 31.5 72 0.0016 37.6 5.5 16 821-836 209-224 (289)
314 PRK05896 DNA polymerase III su 30.9 6.1E+02 0.013 33.3 13.8 23 687-709 39-61 (605)
315 KOG0952 DNA/RNA helicase MER3/ 30.8 81 0.0017 42.8 6.0 58 775-834 973-1031(1230)
316 COG5243 HRD1 HRD ubiquitin lig 30.6 38 0.00082 40.4 2.8 47 1108-1157 284-343 (491)
317 KOG4275 Predicted E3 ubiquitin 30.4 17 0.00036 42.1 -0.1 39 1112-1157 301-340 (350)
318 TIGR00643 recG ATP-dependent D 30.4 2E+02 0.0044 37.8 9.8 76 1275-1351 283-362 (630)
319 PF13245 AAA_19: Part of AAA d 29.9 1.1E+02 0.0023 28.7 5.3 22 689-710 13-34 (76)
320 PRK05707 DNA polymerase III su 29.2 3.1E+02 0.0066 33.1 10.3 44 664-710 3-46 (328)
321 CHL00181 cbbX CbbX; Provisiona 28.6 1.1E+02 0.0024 36.1 6.3 20 689-708 62-81 (287)
322 KOG1815 Predicted E3 ubiquitin 28.0 38 0.00082 42.5 2.5 51 1111-1161 70-128 (444)
323 PRK14087 dnaA chromosomal repl 27.3 2.3E+02 0.0051 35.7 9.2 21 687-707 142-162 (450)
324 KOG0920 ATP-dependent RNA heli 26.6 3.5E+02 0.0076 37.0 10.9 42 662-710 171-212 (924)
325 PLN03025 replication factor C 25.0 1.2E+02 0.0026 36.2 5.9 59 904-962 99-158 (319)
326 COG0553 HepA Superfamily II DN 24.8 10 0.00022 51.1 -3.6 80 1279-1375 445-524 (866)
327 PRK11054 helD DNA helicase IV; 24.6 1.3E+02 0.0028 39.9 6.5 38 663-709 195-232 (684)
328 PHA00673 acetyltransferase dom 24.4 1.2E+02 0.0025 32.7 4.9 44 905-948 88-134 (154)
329 COG1875 NYN ribonuclease and A 23.9 60 0.0013 39.4 2.9 38 906-945 353-390 (436)
330 COG4646 DNA methylase [Transcr 23.8 37 0.0008 41.8 1.2 31 932-962 473-503 (637)
331 cd05563 PTS_IIB_ascorbate PTS_ 23.7 1.9E+02 0.0041 27.2 5.9 51 778-832 2-54 (86)
332 PHA03096 p28-like protein; Pro 23.7 37 0.00079 40.0 1.1 34 1112-1145 179-220 (284)
333 cd05566 PTS_IIB_galactitol PTS 23.5 1.5E+02 0.0031 28.2 5.1 55 777-833 2-58 (89)
334 TIGR02562 cas3_yersinia CRISPR 23.4 2.7E+02 0.0058 38.6 9.0 48 1327-1377 837-884 (1110)
335 KOG0925 mRNA splicing factor A 23.4 60 0.0013 40.4 2.9 53 902-958 157-217 (699)
336 KOG0827 Predicted E3 ubiquitin 23.3 42 0.00092 40.3 1.5 46 1111-1158 4-55 (465)
337 COG0626 MetC Cystathionine bet 23.1 1.3E+02 0.0029 37.2 5.7 78 1274-1376 100-178 (396)
338 PRK05563 DNA polymerase III su 22.9 1E+03 0.022 31.0 13.9 21 689-709 41-61 (559)
339 KOG0926 DEAH-box RNA helicase 22.9 37 0.0008 44.5 1.1 54 889-943 357-425 (1172)
340 KOG4185 Predicted E3 ubiquitin 22.7 48 0.001 39.1 1.9 45 1111-1157 3-53 (296)
341 KOG3629 Guanine-nucleotide rel 22.4 4.3E+02 0.0092 33.6 9.5 76 31-113 463-551 (728)
342 KOG1133 Helicase of the DEAD s 22.4 4E+02 0.0087 35.1 9.6 31 801-836 306-336 (821)
343 PF14570 zf-RING_4: RING/Ubox 22.3 64 0.0014 27.9 2.0 42 1114-1157 1-46 (48)
344 cd00133 PTS_IIB PTS_IIB: subun 21.8 1.8E+02 0.0038 26.4 5.2 53 778-833 2-56 (84)
345 TIGR00362 DnaA chromosomal rep 21.6 2.4E+02 0.0052 34.8 7.8 21 688-708 138-158 (405)
346 PRK07993 DNA polymerase III su 21.2 5E+02 0.011 31.4 10.1 47 664-710 2-48 (334)
347 PRK14873 primosome assembly pr 20.7 3.6E+02 0.0078 35.8 9.4 61 1275-1337 187-249 (665)
348 COG2247 LytB Putative cell wal 20.7 1.8E+02 0.0039 34.7 5.9 60 1275-1334 75-139 (337)
349 PRK14974 cell division protein 20.6 4.7E+02 0.01 31.8 9.6 46 904-950 222-272 (336)
350 TIGR00614 recQ_fam ATP-depende 20.5 7.2E+02 0.016 31.4 11.8 63 1276-1339 51-113 (470)
351 PRK06871 DNA polymerase III su 20.4 7.5E+02 0.016 29.9 11.3 46 665-710 3-48 (325)
352 PRK00149 dnaA chromosomal repl 20.4 2.7E+02 0.0059 34.9 8.0 22 687-708 149-170 (450)
353 cd03031 GRX_GRX_like Glutaredo 20.3 2.7E+02 0.0057 29.8 6.6 56 1278-1333 1-67 (147)
354 COG1199 DinG Rad3-related DNA 20.3 2.5E+02 0.0055 36.9 8.0 45 662-709 13-57 (654)
355 TIGR00580 mfd transcription-re 20.0 3.9E+02 0.0085 36.9 9.8 77 1275-1352 499-579 (926)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-103 Score=891.02 Aligned_cols=576 Identities=42% Similarity=0.710 Sum_probs=478.3
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000549 654 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 733 (1431)
Q Consensus 654 ~~~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 733 (1431)
+.+|.+ +.++|+|||+++|+|+..+|.++. .|||||||||+|||||+|||++..-
T Consensus 175 aeqP~d-lii~LL~fQkE~l~Wl~~QE~Ss~--~GGiLADEMGMGKTIQtIaLllae~---------------------- 229 (791)
T KOG1002|consen 175 AEQPDD-LIIPLLPFQKEGLAWLTSQEESSV--AGGILADEMGMGKTIQTIALLLAEV---------------------- 229 (791)
T ss_pred ccCccc-ceecchhhhHHHHHHHHHhhhhhh--ccceehhhhccchHHHHHHHHHhcc----------------------
Confidence 556776 578999999999999999999876 8999999999999999999998621
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000549 734 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 813 (1431)
Q Consensus 734 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 813 (1431)
..+|||||||.-.+.||.+||.+|.. +.+++++|||.+
T Consensus 230 ----------------------------------------~ra~tLVvaP~VAlmQW~nEI~~~T~--gslkv~~YhG~~ 267 (791)
T KOG1002|consen 230 ----------------------------------------DRAPTLVVAPTVALMQWKNEIERHTS--GSLKVYIYHGAK 267 (791)
T ss_pred ----------------------------------------ccCCeeEEccHHHHHHHHHHHHHhcc--CceEEEEEeccc
Confidence 12469999999999999999998865 789999999999
Q ss_pred CCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCccc
Q 000549 814 RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLL 893 (1431)
Q Consensus 814 r~k~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~ 893 (1431)
|.+..++|..||+|+|||.++.+++.++. .++ ++| . + .
T Consensus 268 R~~nikel~~YDvVLTty~vvEs~yRk~~---------------~Gf---------rrK--------n-----g-----v 305 (791)
T KOG1002|consen 268 RDKNIKELMNYDVVLTTYAVVESVYRKQD---------------YGF---------RRK--------N-----G-----V 305 (791)
T ss_pred ccCCHHHhhcCcEEEEecHHHHHHHHhcc---------------ccc---------ccc--------C-----C-----c
Confidence 99999999999999999999988765421 111 111 1 1 1
Q ss_pred ccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchH-------
Q 000549 894 DIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK------- 966 (1431)
Q Consensus 894 ~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~------- 966 (1431)
+.-+++|+.+.|.||||||||.||++.+.+++|++.|++.+||||||||+||++.|||++++||+..||..+-
T Consensus 306 ~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~ 385 (791)
T KOG1002|consen 306 DKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCA 385 (791)
T ss_pred ccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccc
Confidence 2235789999999999999999999999999999999999999999999999999999999999999984321
Q ss_pred ------------------------HHHhHhccCCCCCch-----hhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEE
Q 000549 967 ------------------------SFCSMIKVPISKNPV-----KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVI 1017 (1431)
Q Consensus 967 ------------------------~F~~~i~~pi~~~~~-----~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e 1017 (1431)
.|......||.+... .++...+.+++.+|+||||-.-.+. +.|||+.+
T Consensus 386 ~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdD---LgLPPRiv 462 (791)
T KOG1002|consen 386 SLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADD---LGLPPRIV 462 (791)
T ss_pred ccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccc---cCCCccce
Confidence 223333455554322 3356789999999999998655442 67999999
Q ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchH
Q 000549 1018 MLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQ 1097 (1431)
Q Consensus 1018 ~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~ 1097 (1431)
.+.+--|+.+|.++|+.|...++..|..|...|.+..+|++|+.++.||||+++||.|+.... ...++.
T Consensus 463 ~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~-----------~~n~~~ 531 (791)
T KOG1002|consen 463 TVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSA-----------NANLPD 531 (791)
T ss_pred eeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehh-----------hcCCCc
Confidence 999999999999999999999999999999999999999999999999999999999874321 111111
Q ss_pred HHHHHHHHHhhhhccccccCCCCCccchhcccCcccchhhhhhhccc----CCCCCCCccccccccccchhhhhhhcccc
Q 000549 1098 ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTA----DDNQCPTRNCKIRLSLSSVFSKATLNNSL 1173 (1431)
Q Consensus 1098 e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~----~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~ 1173 (1431)
+ .....+|.+|.++.++++.+.|.|.||+.|+.+++.. ....|| .|...++.+--- ++.....+
T Consensus 532 e---------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP--~C~i~LsiDlse-~alek~~l 599 (791)
T KOG1002|consen 532 E---------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP--VCHIGLSIDLSE-PALEKTDL 599 (791)
T ss_pred c---------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc--cccccccccccc-hhhhhcch
Confidence 1 1235789999999999999999999999999888643 334688 488877765211 00000000
Q ss_pred ccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcc
Q 000549 1174 SQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTL 1253 (1431)
Q Consensus 1174 ~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 1253 (1431)
.. ..... + -.......|..|.||+++.+.|.-+.+.
T Consensus 600 ~~-Fk~sS---------I-lnRinm~~~qsSTKIEAL~EEl~~l~~r--------------------------------- 635 (791)
T KOG1002|consen 600 KG-FKASS---------I-LNRINMDDWQSSTKIEALVEELYFLRER--------------------------------- 635 (791)
T ss_pred hh-hhhHH---------H-hhhcchhhhcchhHHHHHHHHHHHHHHc---------------------------------
Confidence 00 00000 0 0012234567799999999988775321
Q ss_pred cccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEe
Q 000549 1254 DNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIM 1333 (1431)
Q Consensus 1254 ~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~ 1333 (1431)
....|.|||||||+|||+|+..|.+.|+..+.+.|+|++++|+++|+.|.++++++||||
T Consensus 636 --------------------d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLv 695 (791)
T KOG1002|consen 636 --------------------DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLV 695 (791)
T ss_pred --------------------ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEE
Confidence 145799999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000549 1334 SLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1413 (1431)
Q Consensus 1334 StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1413 (1431)
|++|||+.|||+.|++|++|||||||++|.||.+|+|||||.|||.|+||++++|||++|+++|++|..|+++.+|.++.
T Consensus 696 SLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~ 775 (791)
T KOG1002|consen 696 SLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEE 775 (791)
T ss_pred EeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CcccccCCHHHHHHhhc
Q 000549 1414 GGQQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1414 ~~~~~~lt~~DL~~LF~ 1430 (1431)
...+|+.+|+++||.
T Consensus 776 --Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 776 --AISKLTEEDMQFLFN 790 (791)
T ss_pred --HHHhcCHHHHHHHhc
Confidence 467999999999995
No 2
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4.6e-87 Score=785.45 Aligned_cols=547 Identities=38% Similarity=0.624 Sum_probs=430.5
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000549 654 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 733 (1431)
Q Consensus 654 ~~~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 733 (1431)
.++|.| ++++|+|||+.|+.||+.||.... .|||||||||||||+++|+||+..+.... ..
T Consensus 316 te~P~g-~~v~LmpHQkaal~Wl~wRE~q~~--~GGILaddmGLGKTlsmislil~qK~~~~------------~~---- 376 (901)
T KOG4439|consen 316 TETPDG-LKVELMPHQKAALRWLLWRESQPP--SGGILADDMGLGKTLSMISLILHQKAARK------------AR---- 376 (901)
T ss_pred cCCCCc-ceeecchhhhhhhhhhcccccCCC--CCcccccccccccchHHHHHHHHHHHHHH------------hh----
Confidence 334555 699999999999999999998754 99999999999999999999987432100 00
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000549 734 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 813 (1431)
Q Consensus 734 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 813 (1431)
......+.+||||||++|++||..|+.+.+. ...|+|++|||.+
T Consensus 377 -----------------------------------~~~~~~a~~TLII~PaSli~qW~~Ev~~rl~-~n~LsV~~~HG~n 420 (901)
T KOG4439|consen 377 -----------------------------------EKKGESASKTLIICPASLIHQWEAEVARRLE-QNALSVYLYHGPN 420 (901)
T ss_pred -----------------------------------cccccccCCeEEeCcHHHHHHHHHHHHHHHh-hcceEEEEecCCc
Confidence 0001112249999999999999999999987 4579999999999
Q ss_pred -CCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcc
Q 000549 814 -RTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLL 892 (1431)
Q Consensus 814 -r~k~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~ 892 (1431)
|...+..|++||||||||..+.+. ..++ .+
T Consensus 421 ~r~i~~~~L~~YDvViTTY~lva~~--------~~~e-~~---------------------------------------- 451 (901)
T KOG4439|consen 421 KREISAKELRKYDVVITTYNLVANK--------PDDE-LE---------------------------------------- 451 (901)
T ss_pred cccCCHHHHhhcceEEEeeeccccC--------Cchh-hh----------------------------------------
Confidence 777889999999999999998751 0011 00
Q ss_pred cccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHh
Q 000549 893 LDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMI 972 (1431)
Q Consensus 893 ~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i 972 (1431)
...-.+||.++.|.||||||||.|||++|+.+.|++.|++.+|||||||||||++.|+|++++||+..||++...|.+.+
T Consensus 452 ~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i 531 (901)
T KOG4439|consen 452 EGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENI 531 (901)
T ss_pred cccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhc
Confidence 00114789999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCchhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHc---
Q 000549 973 KVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAA--- 1049 (1431)
Q Consensus 973 ~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~--- 1049 (1431)
..+ ...+..++.-+.+++||||||+.+..++++..||++..+++.++|+..|...|+.+...++..++.++..
T Consensus 532 ~~~----s~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~ 607 (901)
T KOG4439|consen 532 DNM----SKGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQRED 607 (901)
T ss_pred cCc----cccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 543 2344578888999999999999998889999999999999999999999999999988887776654422
Q ss_pred ---------------------------------cccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhch
Q 000549 1050 ---------------------------------GTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLP 1096 (1431)
Q Consensus 1050 ---------------------------------g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~ 1096 (1431)
|.......+||.+|+||||+|+||.+.+...+.... .+..-..
T Consensus 608 ~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~----~~~g~~~ 683 (901)
T KOG4439|consen 608 RNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEF----QMNGGDD 683 (901)
T ss_pred hccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHh----hhcCcch
Confidence 122234567999999999999999766543221110 0000000
Q ss_pred H-HHHHHHHHHhhhhccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhcccccc
Q 000549 1097 Q-ERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQ 1175 (1431)
Q Consensus 1097 ~-e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~ 1175 (1431)
. +.+..+....+.. ....|.|-..- |.
T Consensus 684 sde~~~e~~~l~el~------------k~~~T~~~~D~--------------------~e-------------------- 711 (901)
T KOG4439|consen 684 SDEEQLEEDNLAELE------------KNDETDCSDDN--------------------CE-------------------- 711 (901)
T ss_pred hhhhhhhhhHHHhhh------------hcccccccccc--------------------cc--------------------
Confidence 0 0011111100000 00011111000 00
Q ss_pred CCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccc
Q 000549 1176 RQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDN 1255 (1431)
Q Consensus 1176 ~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 1255 (1431)
+.|....... ....+.+.|+...++.++.+.
T Consensus 712 -----d~p~~~~~q~-------Fe~~r~S~Ki~~~l~~le~i~------------------------------------- 742 (901)
T KOG4439|consen 712 -----DLPTAFPDQA-------FEPDRPSCKIAMVLEILETIL------------------------------------- 742 (901)
T ss_pred -----cccccchhhh-------cccccchhHHHHHHHHHHHHh-------------------------------------
Confidence 0000000000 112245889999988888741
Q ss_pred cchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEee
Q 000549 1256 ISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMS 1334 (1431)
Q Consensus 1256 l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~S 1334 (1431)
....+|+||.|||+++|++++..|.+.|..|..++|....++|+.+|+.||... +.+|||+|
T Consensus 743 -----------------~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlS 805 (901)
T KOG4439|consen 743 -----------------TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLS 805 (901)
T ss_pred -----------------hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEE
Confidence 125689999999999999999999999999999999999999999999999864 59999999
Q ss_pred ccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcC
Q 000549 1335 LKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETG 1414 (1431)
Q Consensus 1335 tkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~ 1414 (1431)
+.|||+||||+.|||+|++|++|||+.|.||.+||+|+||+++|+||||++++|||+||..+|++|..++..++.+..+
T Consensus 806 LtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~t- 884 (901)
T KOG4439|consen 806 LTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSAT- 884 (901)
T ss_pred EccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975554
Q ss_pred cccccCCHHHHHHhhcC
Q 000549 1415 GQQTRLTVDDLNYLFMV 1431 (1431)
Q Consensus 1415 ~~~~~lt~~DL~~LF~~ 1431 (1431)
....+||..|||-||++
T Consensus 885 r~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 885 RKMNKLTLADLKKLFGL 901 (901)
T ss_pred cccccccHHHHHHHhCC
Confidence 46889999999999986
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.2e-85 Score=779.74 Aligned_cols=459 Identities=33% Similarity=0.537 Sum_probs=395.6
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000549 656 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 735 (1431)
Q Consensus 656 ~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 735 (1431)
.|.++....|++||.+||+||.++..... +||||||||||||+|+||++.+.+..
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engi---ngILaDEMGLGKTlQtIs~l~yl~~~---------------------- 213 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGI---NGILADEMGLGKTLQTISLLGYLKGR---------------------- 213 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCc---ccEeehhcccchHHHHHHHHHHHHHh----------------------
Confidence 56676668999999999999999877653 59999999999999999999875421
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000549 736 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 815 (1431)
Q Consensus 736 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 815 (1431)
..-.+|.||+||.|++.||.+||.+|+| .+++++|+|.+..
T Consensus 214 ------------------------------------~~~~GPfLVi~P~StL~NW~~Ef~rf~P---~l~~~~~~Gdk~e 254 (971)
T KOG0385|consen 214 ------------------------------------KGIPGPFLVIAPKSTLDNWMNEFKRFTP---SLNVVVYHGDKEE 254 (971)
T ss_pred ------------------------------------cCCCCCeEEEeeHhhHHHHHHHHHHhCC---CcceEEEeCCHHH
Confidence 1124789999999999999999999987 7999999999744
Q ss_pred C-----CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCC
Q 000549 816 K-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 890 (1431)
Q Consensus 816 k-----~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~ 890 (1431)
+ +...-..+||+||||++..++
T Consensus 255 R~~~~r~~~~~~~fdV~iTsYEi~i~d----------------------------------------------------- 281 (971)
T KOG0385|consen 255 RAALRRDIMLPGRFDVCITSYEIAIKD----------------------------------------------------- 281 (971)
T ss_pred HHHHHHHhhccCCCceEeehHHHHHhh-----------------------------------------------------
Confidence 3 222234899999999998643
Q ss_pred cccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHh
Q 000549 891 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 970 (1431)
Q Consensus 891 ~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~ 970 (1431)
.+.|..+.|.++||||||+|||.++..++.++.+.+.+|++|||||+||++.|||++|+||.|+.|.+...|..
T Consensus 282 ------k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~s 355 (971)
T KOG0385|consen 282 ------KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDS 355 (971)
T ss_pred ------HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHH
Confidence 23578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000549 971 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1050 (1431)
Q Consensus 971 ~i~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g 1050 (1431)
||......+....+.+|+.+|++|+|||.|.+|.. .|||+.+.++++.|++.|+++|..+...-.. .....+
T Consensus 356 wF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~-----sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~---~~n~~~ 427 (971)
T KOG0385|consen 356 WFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK-----SLPPKKELIIYVGMSSMQKKWYKAILMKDLD---ALNGEG 427 (971)
T ss_pred HHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh-----cCCCcceeeEeccchHHHHHHHHHHHHhcch---hhcccc
Confidence 99887766777789999999999999999999987 7999999999999999999999987643322 222222
Q ss_pred ccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccchhcccC
Q 000549 1051 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1130 (1431)
Q Consensus 1051 ~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~Cg 1130 (1431)
.. ....++..+++||+||+||+|+.+.+..
T Consensus 428 ~~--~k~kL~NI~mQLRKccnHPYLF~g~ePg------------------------------------------------ 457 (971)
T KOG0385|consen 428 KG--EKTKLQNIMMQLRKCCNHPYLFDGAEPG------------------------------------------------ 457 (971)
T ss_pred cc--hhhHHHHHHHHHHHhcCCccccCCCCCC------------------------------------------------
Confidence 21 3456778899999999999998653210
Q ss_pred cccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHH
Q 000549 1131 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1210 (1431)
Q Consensus 1131 H~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~al 1210 (1431)
| +....+.....++|+..|
T Consensus 458 ----------------------------------------------------~---------pyttdehLv~nSGKm~vL 476 (971)
T KOG0385|consen 458 ----------------------------------------------------P---------PYTTDEHLVTNSGKMLVL 476 (971)
T ss_pred ----------------------------------------------------C---------CCCcchHHHhcCcceehH
Confidence 0 001112233457788777
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHH
Q 000549 1211 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1290 (1431)
Q Consensus 1211 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~Ld 1290 (1431)
-.+|..+ +..|.||||||||++|||
T Consensus 477 DkLL~~L-------------------------------------------------------k~~GhRVLIFSQmt~mLD 501 (971)
T KOG0385|consen 477 DKLLPKL-------------------------------------------------------KEQGHRVLIFSQMTRMLD 501 (971)
T ss_pred HHHHHHH-------------------------------------------------------HhCCCeEEEeHHHHHHHH
Confidence 7777663 348999999999999999
Q ss_pred HHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000549 1291 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1369 (1431)
Q Consensus 1291 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRv 1369 (1431)
+|+.++.-+++.|+|+||+++.++|.++|+.|+.++ ..+|||+||+|||+||||++|++||+||..|||....||++|+
T Consensus 502 ILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 502 ILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred HHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 999999999999999999999999999999999965 6999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 000549 1370 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGED 1411 (1431)
Q Consensus 1370 hRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d 1411 (1431)
|||||+++|.||||++++||||+|++++..|.++-..+++.+
T Consensus 582 HRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 582 HRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred HhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999998776
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.7e-83 Score=763.38 Aligned_cols=473 Identities=30% Similarity=0.498 Sum_probs=399.4
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000549 656 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 735 (1431)
Q Consensus 656 ~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 735 (1431)
.|. .+...|++||+.||.||++.... ..|||||||||||||||+|++++..+..
T Consensus 198 vPg-~I~~~Lf~yQreGV~WL~~L~~q---~~GGILgDeMGLGKTIQiisFLaaL~~S---------------------- 251 (923)
T KOG0387|consen 198 VPG-FIWSKLFPYQREGVQWLWELYCQ---RAGGILGDEMGLGKTIQIISFLAALHHS---------------------- 251 (923)
T ss_pred ccH-HHHHHhhHHHHHHHHHHHHHHhc---cCCCeecccccCccchhHHHHHHHHhhc----------------------
Confidence 344 45667999999999999998774 3899999999999999999999875432
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000549 736 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 815 (1431)
Q Consensus 736 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 815 (1431)
+.-.+|+|||||++|+.||.+|+++|.+ .++|.+|||....
T Consensus 252 ------------------------------------~k~~~paLIVCP~Tii~qW~~E~~~w~p---~~rv~ilh~t~s~ 292 (923)
T KOG0387|consen 252 ------------------------------------GKLTKPALIVCPATIIHQWMKEFQTWWP---PFRVFILHGTGSG 292 (923)
T ss_pred ------------------------------------ccccCceEEEccHHHHHHHHHHHHHhCc---ceEEEEEecCCcc
Confidence 0123689999999999999999999987 7999999998763
Q ss_pred C---------------CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccc
Q 000549 816 K---------------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRK 880 (1431)
Q Consensus 816 k---------------~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk 880 (1431)
. .........|+||||+.++..
T Consensus 293 ~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~------------------------------------------- 329 (923)
T KOG0387|consen 293 ARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ------------------------------------------- 329 (923)
T ss_pred cccccchhhhhhhhhheeeecccCcEEEEehhhhccc-------------------------------------------
Confidence 1 112223556999999998632
Q ss_pred cccCCCCCCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccC
Q 000549 881 GSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYD 960 (1431)
Q Consensus 881 ~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~ 960 (1431)
..++..+.|++|||||+|+|||++|+.+.+|.+|++.+|++||||||||++.|||+++.|+.|+
T Consensus 330 ----------------~d~l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG 393 (923)
T KOG0387|consen 330 ----------------GDDLLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPG 393 (923)
T ss_pred ----------------CcccccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCC
Confidence 1247788999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHhHhccCCCCCchhh------------HHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHH
Q 000549 961 PFAVYKSFCSMIKVPISKNPVKG------------YKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEE 1028 (1431)
Q Consensus 961 ~f~~~~~F~~~i~~pi~~~~~~~------------~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eE 1028 (1431)
.+++...|...|..||..+.+.. ...|+.++.|++|||+|.+|.. ..||.+.+.++.|.||+.|
T Consensus 394 ~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----~~Lp~K~E~VlfC~LT~~Q 469 (923)
T KOG0387|consen 394 KLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----LKLPKKEEIVLFCRLTKLQ 469 (923)
T ss_pred cccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----ccCCCccceEEEEeccHHH
Confidence 99999999999999998765322 3468999999999999999975 5899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhh
Q 000549 1029 RDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLE 1108 (1431)
Q Consensus 1029 re~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le 1108 (1431)
|.+|+++..-.. +..+.. | ..+.|..+.-||++||||.|+.+.....
T Consensus 470 R~~Y~~fl~s~~--v~~i~n-g-----~~~~l~Gi~iLrkICnHPdll~~~~~~~------------------------- 516 (923)
T KOG0387|consen 470 RRLYQRFLNSSE--VNKILN-G-----KRNCLSGIDILRKICNHPDLLDRRDEDE------------------------- 516 (923)
T ss_pred HHHHHHHhhhHH--HHHHHc-C-----CccceechHHHHhhcCCcccccCccccc-------------------------
Confidence 999998865432 222221 2 2345777788999999998874321000
Q ss_pred hhccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCC
Q 000549 1109 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSD 1188 (1431)
Q Consensus 1109 ~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~ 1188 (1431)
..
T Consensus 517 -----------------------------------------------------------------------~~------- 518 (923)
T KOG0387|consen 517 -----------------------------------------------------------------------KQ------- 518 (923)
T ss_pred -----------------------------------------------------------------------cc-------
Confidence 00
Q ss_pred cccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhc
Q 000549 1189 SKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCS 1268 (1431)
Q Consensus 1189 ~~~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 1268 (1431)
.+..++.+..+.|++.+..+|..+.
T Consensus 519 -----~~D~~g~~k~sGKm~vl~~ll~~W~-------------------------------------------------- 543 (923)
T KOG0387|consen 519 -----GPDYEGDPKRSGKMKVLAKLLKDWK-------------------------------------------------- 543 (923)
T ss_pred -----CCCcCCChhhcchHHHHHHHHHHHh--------------------------------------------------
Confidence 0011133445899999999988752
Q ss_pred ccccccCCCeEEEEcccHHHHHHHHHHHH-hCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc
Q 000549 1269 IDSIKLGGEKAIVFSQWTKMLDLLEASLK-DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA 1347 (1431)
Q Consensus 1269 ~~~i~~~~~KvIVFSq~t~~LdlLe~~L~-~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A 1347 (1431)
..+.|+|+|||...|||+|+..|. ..|+.|+|+||.++.+.|+.+|++||++..++|||++|++||+|||||.|
T Consensus 544 -----kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 544 -----KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred -----hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 267899999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCccccc-CCHHHHH
Q 000549 1348 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTR-LTVDDLN 1426 (1431)
Q Consensus 1348 n~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~-lt~~DL~ 1426 (1431)
|+||+|||.|||.+..||..|+|||||||+|.||||++.+||||+||.+|--|+.+.+.++..- ++.| +...||.
T Consensus 619 nRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p----~q~RfF~~~dl~ 694 (923)
T KOG0387|consen 619 NRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNP----EQRRFFKGNDLH 694 (923)
T ss_pred ceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCH----HHhhhcccccHH
Confidence 9999999999999999999999999999999999999999999999999999999999998543 3333 7778899
Q ss_pred HhhcC
Q 000549 1427 YLFMV 1431 (1431)
Q Consensus 1427 ~LF~~ 1431 (1431)
.||.+
T Consensus 695 dLFsl 699 (923)
T KOG0387|consen 695 DLFSL 699 (923)
T ss_pred HHhCC
Confidence 99863
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.3e-82 Score=782.22 Aligned_cols=600 Identities=26% Similarity=0.409 Sum_probs=479.0
Q ss_pred cCCCccccccccccchhccccccccccccccccCCCccccccCCCCCccCCCCCCCeEEEeccCCccccchhhhhhcccc
Q 000549 508 YAQPSTLNKKELDGVKEDMEAEIKTRSMASHLLKLSPESIQSNSSDCKSHVDDEPDICILEDISQPARSNQSLVLGKTLS 587 (1431)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (1431)
-...+++..+++.|+|+.+++.+|-.+++.|+. ++...|..+|+.++++|=.-.-.....++.||-+
T Consensus 242 Wet~~~L~~~~~rG~kKv~nf~kK~~e~~~~~r-------------~E~~~~~~~dy~~VdRIia~~~~~d~eYLvKW~~ 308 (1373)
T KOG0384|consen 242 WETESELLEMNVRGLKKVDNFKKKVIEEDRWRR-------------QEREEDLNKDYVIVDRIIAEQTSKDPEYLVKWRG 308 (1373)
T ss_pred ccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhhhhhhhhhhhhhhcccCCCceeEEEecC
Confidence 456678888999999999999888889999987 4677889999999999955555556999999999
Q ss_pred cccccccccccccCCCccccccccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCCCCCCCCCCccCCCcH
Q 000549 588 MNRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLR 667 (1431)
Q Consensus 588 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~~~~~~~l~~~~~p~~e~~~P~g~l~~~L~p 667 (1431)
++|..|.|.......|....+...|..+......|..+..-...+.. ++ .+. ..|..+....|+.
T Consensus 309 LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~-----~~----Kle------~qp~~~~g~~LRd 373 (1373)
T KOG0384|consen 309 LPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPR-----FR----KLE------KQPEYKGGNELRD 373 (1373)
T ss_pred CCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchh-----HH----Hhh------cCccccccchhhh
Confidence 99999999999999997777766666554333333223222222221 11 121 2344444568999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccccccc
Q 000549 668 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQ 747 (1431)
Q Consensus 668 hQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~ 747 (1431)
||+.||+||+...... ..||||||||||||||+|+++......
T Consensus 374 yQLeGlNWl~~~W~~~---~n~ILADEmgLgktvqti~fl~~l~~~---------------------------------- 416 (1373)
T KOG0384|consen 374 YQLEGLNWLLYSWYKR---NNCILADEMGLGKTVQTITFLSYLFHS---------------------------------- 416 (1373)
T ss_pred hhcccchhHHHHHHhc---ccceehhhcCCCcchHHHHHHHHHHHh----------------------------------
Confidence 9999999999875532 459999999999999999999764321
Q ss_pred ccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 000549 748 ESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD---------- 817 (1431)
Q Consensus 748 ~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~---------- 817 (1431)
..-.+|.|||||.|++.+|++|+..|. .+++++|||....+.
T Consensus 417 ------------------------~~~~gpflvvvplst~~~W~~ef~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~ 468 (1373)
T KOG0384|consen 417 ------------------------LQIHGPFLVVVPLSTITAWEREFETWT----DMNVIVYHGNLESRQLIRQYEFYHS 468 (1373)
T ss_pred ------------------------hhccCCeEEEeehhhhHHHHHHHHHHh----hhceeeeecchhHHHHHHHHHheec
Confidence 112478999999999999999999996 499999999854331
Q ss_pred c-ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000549 818 P-CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 896 (1431)
Q Consensus 818 ~-~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~ 896 (1431)
. ...-+++++||||+++.++
T Consensus 469 ~~~~~lkf~~lltTye~~LkD----------------------------------------------------------- 489 (1373)
T KOG0384|consen 469 SNTKKLKFNALLTTYEIVLKD----------------------------------------------------------- 489 (1373)
T ss_pred CCccccccceeehhhHHHhcc-----------------------------------------------------------
Confidence 1 2223799999999999643
Q ss_pred cCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHhccCC
Q 000549 897 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 976 (1431)
Q Consensus 897 ~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i~~pi 976 (1431)
...|..++|..+++||||++||..+..+..+..++.++|+++||||+||++.|||+|++||.|+.|..+..|...+
T Consensus 490 k~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~---- 565 (1373)
T KOG0384|consen 490 KAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF---- 565 (1373)
T ss_pred HhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh----
Confidence 1248889999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCchhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHccccchhH
Q 000549 977 SKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNY 1056 (1431)
Q Consensus 977 ~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g~~~~~~ 1056 (1431)
.......++.|+.+|+|+||||.|++|.+ .|||+.+.++.|+||..|+++|..+....... +..|....+
T Consensus 566 ~~~~e~~~~~L~~~L~P~~lRr~kkdvek-----slp~k~E~IlrVels~lQk~yYk~ILtkN~~~----LtKG~~g~~- 635 (1373)
T KOG0384|consen 566 DEETEEQVRKLQQILKPFLLRRLKKDVEK-----SLPPKEETILRVELSDLQKQYYKAILTKNFSA----LTKGAKGST- 635 (1373)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHhhhcc-----CCCCCcceEEEeehhHHHHHHHHHHHHhhHHH----HhccCCCCC-
Confidence 34456789999999999999999999987 79999999999999999999999987654332 334443333
Q ss_pred HHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccchhcccCcccchh
Q 000549 1057 VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQ 1136 (1431)
Q Consensus 1057 ~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgH~fC~~ 1136 (1431)
.++|..++.||+||+||+|+++.+..-. ...+.
T Consensus 636 ~~lLNimmELkKccNHpyLi~gaee~~~------------~~~~~----------------------------------- 668 (1373)
T KOG0384|consen 636 PSLLNIMMELKKCCNHPYLIKGAEEKIL------------GDFRD----------------------------------- 668 (1373)
T ss_pred chHHHHHHHHHHhcCCccccCcHHHHHH------------Hhhhh-----------------------------------
Confidence 7789999999999999999976432100 00000
Q ss_pred hhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHh
Q 000549 1137 CICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQS 1216 (1431)
Q Consensus 1137 Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~allelL~~ 1216 (1431)
|+ .+. .+ ......|+|+..+-.+|.+
T Consensus 669 ------------~~---------~d~-----~L----------------------------~~lI~sSGKlVLLDKLL~r 694 (1373)
T KOG0384|consen 669 ------------KM---------RDE-----AL----------------------------QALIQSSGKLVLLDKLLPR 694 (1373)
T ss_pred ------------cc---------hHH-----HH----------------------------HHHHHhcCcEEeHHHHHHH
Confidence 00 000 00 0000123444444444443
Q ss_pred hcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHH
Q 000549 1217 LAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL 1296 (1431)
Q Consensus 1217 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L 1296 (1431)
++..|+|||||||+++|||+|+++|
T Consensus 695 -------------------------------------------------------Lk~~GHrVLIFSQMVRmLDIL~eYL 719 (1373)
T KOG0384|consen 695 -------------------------------------------------------LKEGGHRVLIFSQMVRMLDILAEYL 719 (1373)
T ss_pred -------------------------------------------------------HhcCCceEEEhHHHHHHHHHHHHHH
Confidence 3448999999999999999999999
Q ss_pred HhCCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCC
Q 000549 1297 KDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1375 (1431)
Q Consensus 1297 ~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQt 1375 (1431)
..++++|-||||++..+-|+++|+.||.. .+-+|||+||+|||+||||+.|++|||||..|||....||+.|+|||||+
T Consensus 720 ~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk 799 (1373)
T KOG0384|consen 720 SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK 799 (1373)
T ss_pred HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhccc
Confidence 99999999999999999999999999985 46889999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC---cCcccccCCHHHHHHhh
Q 000549 1376 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE---TGGQQTRLTVDDLNYLF 1429 (1431)
Q Consensus 1376 r~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~---~~~~~~~lt~~DL~~LF 1429 (1431)
+.|.|||||+++|||+.|++++.+|.-|-.+++..-. .......++.+||-.|.
T Consensus 800 k~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 800 KHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred ceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 9999999999999999999999999988777764322 22445678888887754
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=5.1e-81 Score=764.98 Aligned_cols=505 Identities=31% Similarity=0.508 Sum_probs=410.2
Q ss_pred ccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000549 661 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 740 (1431)
Q Consensus 661 l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 740 (1431)
++..||+||.+||+|+.-..+-+ --||||||||||||+|+|+.++.....+
T Consensus 972 I~a~LRkYQqEGVnWLaFLnky~---LHGILcDDMGLGKTLQticilAsd~y~r-------------------------- 1022 (1549)
T KOG0392|consen 972 ISAKLRKYQQEGVNWLAFLNKYK---LHGILCDDMGLGKTLQTICILASDHYKR-------------------------- 1022 (1549)
T ss_pred hhHHHHHHHHhccHHHHHHHHhc---ccceeeccccccHHHHHHHHHHHHHHhh--------------------------
Confidence 46789999999999998876644 4499999999999999999997643210
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC--CCCCc
Q 000549 741 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDP 818 (1431)
Q Consensus 741 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~--r~k~~ 818 (1431)
+.....| ...|.|||||.+|..+|+.|+.++++ -|+|+.|-|.. |....
T Consensus 1023 -----~s~~~e~---------------------~~~PSLIVCPsTLtGHW~~E~~kf~p---fL~v~~yvg~p~~r~~lR 1073 (1549)
T KOG0392|consen 1023 -----RSESSEF---------------------NRLPSLIVCPSTLTGHWKSEVKKFFP---FLKVLQYVGPPAERRELR 1073 (1549)
T ss_pred -----cccchhh---------------------ccCCeEEECCchhhhHHHHHHHHhcc---hhhhhhhcCChHHHHHHH
Confidence 0011111 12468999999999999999999998 49999999885 44456
Q ss_pred ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccC
Q 000549 819 CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 898 (1431)
Q Consensus 819 ~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~ 898 (1431)
.+..+++|+||+|+++++++.
T Consensus 1074 ~q~~~~~iiVtSYDv~RnD~d----------------------------------------------------------- 1094 (1549)
T KOG0392|consen 1074 DQYKNANIIVTSYDVVRNDVD----------------------------------------------------------- 1094 (1549)
T ss_pred hhccccceEEeeHHHHHHHHH-----------------------------------------------------------
Confidence 677889999999999987531
Q ss_pred CccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHhccCCCC
Q 000549 899 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 978 (1431)
Q Consensus 899 pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i~~pi~~ 978 (1431)
.|.++.|.++|+||+|-|||.+++.++++.+|++.+|++||||||||++.|||++|.||+|+.++..+.|.++|.+||-.
T Consensus 1095 ~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~a 1174 (1549)
T KOG0392|consen 1095 YLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILA 1174 (1549)
T ss_pred HHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhh
Confidence 26778899999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred Cc------------hhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Q 000549 979 NP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEY 1046 (1431)
Q Consensus 979 ~~------------~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~ 1046 (1431)
.. ..++..||+.+-|||+||+|++|+. +||||.++.++|+|+|.|+++|+.+....+......
T Consensus 1175 sRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~-----DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~ 1249 (1549)
T KOG0392|consen 1175 SRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLK-----DLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQ 1249 (1549)
T ss_pred hcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hCChhhhhheeeccCHHHHHHHHHHHHHhccccccc
Confidence 21 1236789999999999999999998 899999999999999999999999877644333333
Q ss_pred HHccccchh--HHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccc
Q 000549 1047 AAAGTVKQN--YVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDA 1124 (1431)
Q Consensus 1047 ~~~g~~~~~--~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~ 1124 (1431)
.+.+....+ ..++|+.|..||+.|+||.|+.+.....+..
T Consensus 1250 ~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~-------------------------------------- 1291 (1549)
T KOG0392|consen 1250 IDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAA-------------------------------------- 1291 (1549)
T ss_pred cccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHH--------------------------------------
Confidence 333332222 6899999999999999999986532111100
Q ss_pred hhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCccccc
Q 000549 1125 VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNS 1204 (1431)
Q Consensus 1125 vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~s 1204 (1431)
++..|+|. +..+. ....+
T Consensus 1292 i~~~l~~~-------------------------------------~~~LH-------------------------di~hs 1309 (1549)
T KOG0392|consen 1292 IVSHLAHF-------------------------------------NSSLH-------------------------DIQHS 1309 (1549)
T ss_pred HHHHHHHh-------------------------------------hhhHH-------------------------Hhhhc
Confidence 01111110 00000 01237
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcc
Q 000549 1205 SKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQ 1284 (1431)
Q Consensus 1205 sKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq 1284 (1431)
+|+.|+-++|.+ ++.++....... .. -...++|+|||||
T Consensus 1310 pKl~AL~qLL~e----------------------CGig~~~~~~~g-~~------------------s~vsqHRiLIFcQ 1348 (1549)
T KOG0392|consen 1310 PKLSALKQLLSE----------------------CGIGNNSDSEVG-TP------------------SDVSQHRILIFCQ 1348 (1549)
T ss_pred hhHHHHHHHHHH----------------------hCCCCCCccccc-Cc------------------chhccceeEEeee
Confidence 899999988886 222211111100 00 0026799999999
Q ss_pred cHHHHHHHHHHHHhC---CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcCh
Q 000549 1285 WTKMLDLLEASLKDS---SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT 1361 (1431)
Q Consensus 1285 ~t~~LdlLe~~L~~~---gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~ 1361 (1431)
|..|+|+++.-|-+. .+.|.|+||++++.+|++++++||+||.+.|||++|.+||+|||||.|++|||+|-.|||+.
T Consensus 1349 lK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMr 1428 (1549)
T KOG0392|consen 1349 LKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR 1428 (1549)
T ss_pred HHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchh
Confidence 999999999999765 67799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000549 1362 EDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1362 e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~ 1430 (1431)
..||+||||||||||.|.|||||++||+||+|+.+|.-|...++.+++.+- ..+..+..++|..||.
T Consensus 1429 DLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN--asl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1429 DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN--ASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc--ccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999997654 4577889999999997
No 7
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.1e-81 Score=774.82 Aligned_cols=556 Identities=46% Similarity=0.717 Sum_probs=479.8
Q ss_pred cCCCCCCCCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhh
Q 000549 647 ISQPNAEASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLE 726 (1431)
Q Consensus 647 ~~~p~~e~~~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~ 726 (1431)
+.++..+...|.+.++++ |+....||+..+.....++||||||+||+|||+++|++++..+....
T Consensus 117 ~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~----------- 181 (674)
T KOG1001|consen 117 IILYKANKISPKNTLRFP----LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSK----------- 181 (674)
T ss_pred hhhhhhhccCCcccccCC----HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCc-----------
Confidence 444555556677666666 66666666666666667799999999999999999999988653300
Q ss_pred hccccccccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEE
Q 000549 727 TLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSV 806 (1431)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~V 806 (1431)
+ .......+.+|||||.+++.||..|+ ......+.+.+
T Consensus 182 -----~------------------------------------~~~~~~~kttLivcp~s~~~qW~~el-ek~~~~~~l~v 219 (674)
T KOG1001|consen 182 -----E------------------------------------EDRQKEFKTTLIVCPTSLLTQWKTEL-EKVTEEDKLSI 219 (674)
T ss_pred -----c------------------------------------hhhccccCceeEecchHHHHHHHHHH-hccCCccceEE
Confidence 0 00123457899999999999999999 66677889999
Q ss_pred EEEeCCCCCCCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCC
Q 000549 807 LVYHGSSRTKDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 886 (1431)
Q Consensus 807 lvy~G~~r~k~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk 886 (1431)
++||| |.++..++..||||||||.++..
T Consensus 220 ~v~~g--r~kd~~el~~~dVVltTy~il~~-------------------------------------------------- 247 (674)
T KOG1001|consen 220 YVYHG--RTKDKSELNSYDVVLTTYDILKN-------------------------------------------------- 247 (674)
T ss_pred EEecc--cccccchhcCCceEEeeHHHhhc--------------------------------------------------
Confidence 99999 99999999999999999999952
Q ss_pred CCCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchH
Q 000549 887 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 966 (1431)
Q Consensus 887 ~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~ 966 (1431)
++|..+.|.|||+||||.|+|++++.+++++.|++.+||||||||+||+++|+|++++|++.+||..+.
T Consensus 248 -----------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~ 316 (674)
T KOG1001|consen 248 -----------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQN 316 (674)
T ss_pred -----------ccccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhH
Confidence 357779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhccCCCCCc-hhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHH
Q 000549 967 SFCSMIKVPISKNP-VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKE 1045 (1431)
Q Consensus 967 ~F~~~i~~pi~~~~-~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~ 1045 (1431)
.|...+..|+..+. ..++.+++.+|+.+|+||+|....+|+|++.|||+...++.++++.+|+.+|..++...+.++..
T Consensus 317 ~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~ 396 (674)
T KOG1001|consen 317 YFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSN 396 (674)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHH
Confidence 99999999999998 78899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccch
Q 000549 1046 YAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAV 1125 (1431)
Q Consensus 1046 ~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~v 1125 (1431)
++..|++..+|..++..++||||+|+||.++................ ...+...+..+ ..|.+|.+ .+.++
T Consensus 397 ~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~-------~~~~i~~l~~~-~~c~ic~~-~~~~~ 467 (674)
T KOG1001|consen 397 YANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAAL-------IIRLIVDLSVS-HWCHICCD-LDSFF 467 (674)
T ss_pred HhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchH-------HHHHHHHHhhc-cccccccc-cccce
Confidence 99999999999999999999999999999875432221111111100 11144455555 89999999 88899
Q ss_pred hcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccH
Q 000549 1126 VSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSS 1205 (1431)
Q Consensus 1126 it~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ss 1205 (1431)
++.|+|.||.+|+.+.+....+. |++.|+..+....+++...+...+.+ .. ..+.
T Consensus 468 it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~l~s~~~~~~~~~~-----------------------~~-~~s~ 522 (674)
T KOG1001|consen 468 ITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKKLLSANPLPSIIND-----------------------LL-PESS 522 (674)
T ss_pred eecccchHHHHHHHhccccccCC-CCcHHHHHHHHHHHhhcccccchhhh-----------------------cc-chhh
Confidence 99999999999999999887766 55579999988888865544443322 00 0588
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEccc
Q 000549 1206 KIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQW 1285 (1431)
Q Consensus 1206 Ki~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~ 1285 (1431)
|+.+++++|+.... -.. .|+||||||
T Consensus 523 ki~~~~~~l~~~~~-----------------------------------------------------s~~-~kiiifsq~ 548 (674)
T KOG1001|consen 523 KIYAFLKILQAKEM-----------------------------------------------------SEQ-PKIVIFSQL 548 (674)
T ss_pred hhHHHHHHHhhccC-----------------------------------------------------CCC-CceeeehhH
Confidence 99999998883100 002 399999999
Q ss_pred HHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHH
Q 000549 1286 TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQA 1365 (1431)
Q Consensus 1286 t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QA 1365 (1431)
+.++++++..|...++.+.+++|.|+..+|.+.+..|+.++.++||++|++|||.||||++|+|||++||||||++|+||
T Consensus 549 ~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQa 628 (674)
T KOG1001|consen 549 IWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQA 628 (674)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCC
Q 000549 1366 IDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGE 1410 (1431)
Q Consensus 1366 IGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~ 1410 (1431)
|+|+||+||+++|+|+||++++|+||||+++|++|+.++..++|+
T Consensus 629 idR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 629 IDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999875
No 8
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.4e-80 Score=736.61 Aligned_cols=494 Identities=31% Similarity=0.507 Sum_probs=389.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 742 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 742 (1431)
+.|.+||+.||+|+.-..+..+ .||||||||||||+|+||++++.+..
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~l---~gILADEMGLGKTiQvIaFlayLkq~----------------------------- 445 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKKL---NGILADEMGLGKTIQVIAFLAYLKQI----------------------------- 445 (941)
T ss_pred CcccchhhhhHHHHHHHHHccc---cceehhhccCcchhHHHHHHHHHHHc-----------------------------
Confidence 4699999999999988777554 47999999999999999999875421
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----
Q 000549 743 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD----- 817 (1431)
Q Consensus 743 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~----- 817 (1431)
...+|.|||||+|+|.||.+|+.+||| .|+|..|||+...+.
T Consensus 446 ------------------------------g~~gpHLVVvPsSTleNWlrEf~kwCP---sl~Ve~YyGSq~ER~~lR~~ 492 (941)
T KOG0389|consen 446 ------------------------------GNPGPHLVVVPSSTLENWLREFAKWCP---SLKVEPYYGSQDERRELRER 492 (941)
T ss_pred ------------------------------CCCCCcEEEecchhHHHHHHHHHHhCC---ceEEEeccCcHHHHHHHHHH
Confidence 124688999999999999999999998 799999999964321
Q ss_pred -cccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000549 818 -PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 896 (1431)
Q Consensus 818 -~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~ 896 (1431)
...-..|||++|||..+... ++|
T Consensus 493 i~~~~~~ydVllTTY~la~~~--------kdD------------------------------------------------ 516 (941)
T KOG0389|consen 493 IKKNKDDYDVLLTTYNLAASS--------KDD------------------------------------------------ 516 (941)
T ss_pred HhccCCCccEEEEEeecccCC--------hHH------------------------------------------------
Confidence 11123899999999988631 111
Q ss_pred cCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccch-HHHHhHhccC
Q 000549 897 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVY-KSFCSMIKVP 975 (1431)
Q Consensus 897 ~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~-~~F~~~i~~p 975 (1431)
++.|.+.+|+.||.||+|++||..|.+++.+..++|++|++|||||+||++.||++||.|+.|..|... ..+...|...
T Consensus 517 Rsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k 596 (941)
T KOG0389|consen 517 RSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAK 596 (941)
T ss_pred HHHHHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhcc
Confidence 234778899999999999999999999999999999999999999999999999999999999999754 3444444322
Q ss_pred CC-CCc-------hhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Q 000549 976 IS-KNP-------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYA 1047 (1431)
Q Consensus 976 i~-~~~-------~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~ 1047 (1431)
-. .+. ..++.+...+++||+|||.|.+|++ .|||+..++.+|.|+..|+.+|+.+............
T Consensus 597 ~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~-----~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~ 671 (941)
T KOG0389|consen 597 KTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLK-----QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVS 671 (941)
T ss_pred CCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccc
Confidence 21 111 2357788999999999999999998 8999999999999999999999988655422111111
Q ss_pred HccccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHH------HHHHHHhhhhccccccCCCCC
Q 000549 1048 AAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQ------MYLLNCLEASLAICGICNDPP 1121 (1431)
Q Consensus 1048 ~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~------~~ll~~le~~~~~C~iC~d~~ 1121 (1431)
.. ....+ -..+++||++++||+|++.+..+..++ .|++.+..+.. .++...++
T Consensus 672 ~n-s~~~~----~~vlmqlRK~AnHPLL~R~~Y~de~L~---~mak~il~e~ay~~~n~qyIfEDm~------------- 730 (941)
T KOG0389|consen 672 KN-SELKS----GNVLMQLRKAANHPLLFRSIYTDEKLR---KMAKRILNEPAYKKANEQYIFEDME------------- 730 (941)
T ss_pred cc-ccccc----chHHHHHHHHhcChhHHHHhccHHHHH---HHHHHHhCchhhhhcCHHHHHHHHH-------------
Confidence 11 00111 346789999999999998766544333 33333332211 11111111
Q ss_pred ccchhc-ccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCc
Q 000549 1122 EDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGV 1200 (1431)
Q Consensus 1122 e~~vit-~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~ 1200 (1431)
+++ .--|.+|.+.- |-. ........
T Consensus 731 ---~msDfelHqLc~~f~---------------~~~------------------------------------~f~L~d~~ 756 (941)
T KOG0389|consen 731 ---VMSDFELHQLCCQFR---------------HLS------------------------------------KFQLKDDL 756 (941)
T ss_pred ---hhhHHHHHHHHHhcC---------------CCc------------------------------------ccccCCch
Confidence 111 11244443311 000 00111235
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEE
Q 000549 1201 WYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAI 1280 (1431)
Q Consensus 1201 ~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvI 1280 (1431)
|..|+|++.|.++|.++ +..|+|||
T Consensus 757 ~mdSgK~r~L~~LLp~~-------------------------------------------------------k~~G~RVL 781 (941)
T KOG0389|consen 757 WMDSGKCRKLKELLPKI-------------------------------------------------------KKKGDRVL 781 (941)
T ss_pred hhhhhhHhHHHHHHHHH-------------------------------------------------------hhcCCEEE
Confidence 66799999999998874 23789999
Q ss_pred EEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcC
Q 000549 1281 VFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPT 1360 (1431)
Q Consensus 1281 VFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~ 1360 (1431)
||||||.|||+|+..|...++.|+|+||++....|+.+|+.|+++.+++|+|+||+|||.||||++||+||++|..+||.
T Consensus 782 iFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~ 861 (941)
T KOG0389|consen 782 IFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPY 861 (941)
T ss_pred EeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 000549 1361 TEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDE 1412 (1431)
Q Consensus 1361 ~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~ 1412 (1431)
...||.+|+||+||+|||+|||||+++||||.|+++++.|..+-..+-+.++
T Consensus 862 dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 862 DDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred ccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 9999999999999999999999999999999999999999999877765444
No 9
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=5e-79 Score=782.93 Aligned_cols=474 Identities=29% Similarity=0.482 Sum_probs=395.9
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000549 656 APDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 735 (1431)
Q Consensus 656 ~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 735 (1431)
.|. .++..|++||+.||+||+..... +.|||||||||||||+|+|+++...+..
T Consensus 162 qP~-~i~~~Lr~YQleGlnWLi~l~~~---g~gGILADEMGLGKTlQaIalL~~L~~~---------------------- 215 (1033)
T PLN03142 162 QPS-CIKGKMRDYQLAGLNWLIRLYEN---GINGILADEMGLGKTLQTISLLGYLHEY---------------------- 215 (1033)
T ss_pred CCh-HhccchHHHHHHHHHHHHHHHhc---CCCEEEEeCCCccHHHHHHHHHHHHHHh----------------------
Confidence 354 45578999999999999987553 3689999999999999999999764210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000549 736 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 815 (1431)
Q Consensus 736 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 815 (1431)
....+|+|||||++++.||.+||.+|++ .+++++|+|....
T Consensus 216 ------------------------------------~~~~gp~LIVvP~SlL~nW~~Ei~kw~p---~l~v~~~~G~~~e 256 (1033)
T PLN03142 216 ------------------------------------RGITGPHMVVAPKSTLGNWMNEIRRFCP---VLRAVKFHGNPEE 256 (1033)
T ss_pred ------------------------------------cCCCCCEEEEeChHHHHHHHHHHHHHCC---CCceEEEeCCHHH
Confidence 1123679999999999999999999986 6899999998643
Q ss_pred CCc-----ccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCC
Q 000549 816 KDP-----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDG 890 (1431)
Q Consensus 816 k~~-----~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~ 890 (1431)
+.. .....+|||||||+++.++.
T Consensus 257 R~~~~~~~~~~~~~dVvITSYe~l~~e~---------------------------------------------------- 284 (1033)
T PLN03142 257 RAHQREELLVAGKFDVCVTSFEMAIKEK---------------------------------------------------- 284 (1033)
T ss_pred HHHHHHHHhcccCCCcceecHHHHHHHH----------------------------------------------------
Confidence 211 12357999999999986421
Q ss_pred cccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHh
Q 000549 891 LLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCS 970 (1431)
Q Consensus 891 ~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~ 970 (1431)
..|..+.|++|||||||+|||..++++++++.|++.+||+|||||++|++.|||++|+||.|+.|.+...|..
T Consensus 285 -------~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~ 357 (1033)
T PLN03142 285 -------TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDE 357 (1033)
T ss_pred -------HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHH
Confidence 1366778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000549 971 MIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1050 (1431)
Q Consensus 971 ~i~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g 1050 (1431)
+|..+........+.+|+.++++||+||+|.+|.. .|||+.+.+++|.||+.|+++|..+.......+ ..+
T Consensus 358 ~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~-----~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l----~~g 428 (1033)
T PLN03142 358 WFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK-----GLPPKKETILKVGMSQMQKQYYKALLQKDLDVV----NAG 428 (1033)
T ss_pred HHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh-----hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH----hcc
Confidence 99876555556678899999999999999999976 799999999999999999999998875543322 222
Q ss_pred ccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccchhcccC
Q 000549 1051 TVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICG 1130 (1431)
Q Consensus 1051 ~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~Cg 1130 (1431)
. ....++..+++||++|+||.|+....... +.
T Consensus 429 ~---~~~~LlnilmqLRk~cnHP~L~~~~ep~~----------------------------------------~~----- 460 (1033)
T PLN03142 429 G---ERKRLLNIAMQLRKCCNHPYLFQGAEPGP----------------------------------------PY----- 460 (1033)
T ss_pred c---cHHHHHHHHHHHHHHhCCHHhhhcccccC----------------------------------------cc-----
Confidence 2 23457888999999999998764211000 00
Q ss_pred cccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHH
Q 000549 1131 HVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAA 1210 (1431)
Q Consensus 1131 H~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~al 1210 (1431)
..+ ......++|+..+
T Consensus 461 -------------------------------------------------------~~~---------e~lie~SgKl~lL 476 (1033)
T PLN03142 461 -------------------------------------------------------TTG---------EHLVENSGKMVLL 476 (1033)
T ss_pred -------------------------------------------------------cch---------hHHhhhhhHHHHH
Confidence 000 0011236788888
Q ss_pred HHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHH
Q 000549 1211 LEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLD 1290 (1431)
Q Consensus 1211 lelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~Ld 1290 (1431)
.++|..+ ...+.||||||||+.+|+
T Consensus 477 dkLL~~L-------------------------------------------------------k~~g~KVLIFSQft~~Ld 501 (1033)
T PLN03142 477 DKLLPKL-------------------------------------------------------KERDSRVLIFSQMTRLLD 501 (1033)
T ss_pred HHHHHHH-------------------------------------------------------HhcCCeEEeehhHHHHHH
Confidence 8777763 126789999999999999
Q ss_pred HHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000549 1291 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1369 (1431)
Q Consensus 1291 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRv 1369 (1431)
+|+.+|...|+.|++|+|+++..+|+++|++|++++ ...|||+|++|||+|||||.|++||+||+||||+.+.||+|||
T Consensus 502 iLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 502 ILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred HHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999754 5679999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000549 1370 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1370 hRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~ 1430 (1431)
|||||+++|+||||++++||||+|++++.+|..+...+++.+... ....++.+||..||.
T Consensus 582 HRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~-~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 582 HRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLA-EQKTVNKDELLQMVR 641 (1033)
T ss_pred hhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCccc-ccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998765442 335788999988874
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-78 Score=730.27 Aligned_cols=582 Identities=30% Similarity=0.460 Sum_probs=424.3
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccc
Q 000549 655 SAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEED 734 (1431)
Q Consensus 655 ~~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~ 734 (1431)
.+-+.+|...|+.||+.||.||+......+ .||||||||||||||+|+|+++.-
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYeknl---NGILADEmGLGKTIQtISllAhLA----------------------- 659 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYEKNL---NGILADEMGLGKTIQTISLLAHLA----------------------- 659 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHhcc---cceehhhhcccchhHHHHHHHHHH-----------------------
Confidence 345567888999999999999999877664 599999999999999999998641
Q ss_pred cccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 000549 735 NGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSR 814 (1431)
Q Consensus 735 ~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r 814 (1431)
|. ....+|.|||||.+++-+|+-|+++|++ .|+++.|+|+.+
T Consensus 660 -----------------Ce------------------egnWGPHLIVVpTsviLnWEMElKRwcP---glKILTYyGs~k 701 (1958)
T KOG0391|consen 660 -----------------CE------------------EGNWGPHLIVVPTSVILNWEMELKRWCP---GLKILTYYGSHK 701 (1958)
T ss_pred -----------------hc------------------ccCCCCceEEeechhhhhhhHHHhhhCC---cceEeeecCCHH
Confidence 10 2345789999999999999999999998 799999999976
Q ss_pred CCC-----cccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCC
Q 000549 815 TKD-----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 889 (1431)
Q Consensus 815 ~k~-----~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~ 889 (1431)
.+. ..+-..|.|.||+|..+..++
T Consensus 702 ErkeKRqgW~kPnaFHVCItSYklv~qd~--------------------------------------------------- 730 (1958)
T KOG0391|consen 702 ERKEKRQGWAKPNAFHVCITSYKLVFQDL--------------------------------------------------- 730 (1958)
T ss_pred HHHHHhhcccCCCeeEEeehhhHHHHhHH---------------------------------------------------
Confidence 542 223346889999999997432
Q ss_pred CcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHH
Q 000549 890 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFC 969 (1431)
Q Consensus 890 ~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~ 969 (1431)
..+.+..|.++||||||+|||.++++++++..+++.+|++|||||+||++.|||+|++||+|..|.+...|.
T Consensus 731 --------~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk 802 (1958)
T KOG0391|consen 731 --------TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFK 802 (1958)
T ss_pred --------HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHH
Confidence 125566899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhccCCCCC-------chhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHH
Q 000549 970 SMIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQ 1042 (1431)
Q Consensus 970 ~~i~~pi~~~-------~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~ 1042 (1431)
.||.+|+..- ..+.+.+||++|++|+|||+|.+|.+ .||.|.+++++|.||..||.+|+.+..+ ..
T Consensus 803 ~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEK-----QlpkKyEHvv~CrLSkRQR~LYDDfmsq--~~ 875 (1958)
T KOG0391|consen 803 PWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEK-----QLPKKYEHVVKCRLSKRQRALYDDFMSQ--PG 875 (1958)
T ss_pred HHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHH-----hcchhhhhheeeehhhhHHHHHHHHhhc--cc
Confidence 9999998643 23447899999999999999999987 8999999999999999999999988543 33
Q ss_pred HHHHHHccccchhHHHHHHHHHHHHHHccCccccccc-------------Cch-hhhhhH--------------------
Q 000549 1043 FKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGF-------------DSN-SLLRSS-------------------- 1088 (1431)
Q Consensus 1043 ~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~-------------~~~-s~~~~s-------------------- 1088 (1431)
-++.+..| +++++|..||+||++||||-|+... ... ...+..
T Consensus 876 TKetLkSG----hfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~ 951 (1958)
T KOG0391|consen 876 TKETLKSG----HFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTS 951 (1958)
T ss_pred hhhHhhcC----chhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcc
Confidence 34444444 7889999999999999999886310 000 000000
Q ss_pred ----------------------------------------------------HH--------------------------
Q 000549 1089 ----------------------------------------------------VE-------------------------- 1090 (1431)
Q Consensus 1089 ----------------------------------------------------~e-------------------------- 1090 (1431)
.+
T Consensus 952 ~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p 1031 (1958)
T KOG0391|consen 952 AVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGP 1031 (1958)
T ss_pred cccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCc
Confidence 00
Q ss_pred --HHhhc-------------------------------------------------------------------------
Q 000549 1091 --MAKKL------------------------------------------------------------------------- 1095 (1431)
Q Consensus 1091 --~a~~l------------------------------------------------------------------------- 1095 (1431)
+....
T Consensus 1032 ~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gt 1111 (1958)
T KOG0391|consen 1032 QSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGT 1111 (1958)
T ss_pred HhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcch
Confidence 00000
Q ss_pred ----------------hHHHHHHHHHHhhh------------hccccccCCC--------CCccchhcccCc-ccchhhh
Q 000549 1096 ----------------PQERQMYLLNCLEA------------SLAICGICND--------PPEDAVVSICGH-VFCNQCI 1138 (1431)
Q Consensus 1096 ----------------~~e~~~~ll~~le~------------~~~~C~iC~d--------~~e~~vit~CgH-~fC~~Ci 1138 (1431)
..+++-.+-.+|+. .+.+|.+=++ .+...+++.|.- ..|..-|
T Consensus 1112 at~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iI 1191 (1958)
T KOG0391|consen 1112 ATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDII 1191 (1958)
T ss_pred hhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHH
Confidence 00000000000100 0011222111 112223333321 1122223
Q ss_pred hhhcc------cCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHH
Q 000549 1139 CERLT------ADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALE 1212 (1431)
Q Consensus 1139 ~~~l~------~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~alle 1212 (1431)
..+.. .....|..+.-...+....-.....+...+....... .....-....+...=..|+..|+.+|.-
T Consensus 1192 drfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~----q~~~~r~lqFPelrLiqyDcGKLQtLAi 1267 (1958)
T KOG0391|consen 1192 DRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQR----QTTAPRLLQFPELRLIQYDCGKLQTLAI 1267 (1958)
T ss_pred HHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchh----hccchhhhcCcchheeecccchHHHHHH
Confidence 32211 1122222111000011000000011111111100000 0000111112223333456778888877
Q ss_pred HHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHH
Q 000549 1213 VLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLL 1292 (1431)
Q Consensus 1213 lL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlL 1292 (1431)
+|+.+ +..|+++|||+|++.|||+|
T Consensus 1268 LLqQL-------------------------------------------------------k~eghRvLIfTQMtkmLDVL 1292 (1958)
T KOG0391|consen 1268 LLQQL-------------------------------------------------------KSEGHRVLIFTQMTKMLDVL 1292 (1958)
T ss_pred HHHHH-------------------------------------------------------HhcCceEEehhHHHHHHHHH
Confidence 77763 33789999999999999999
Q ss_pred HHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc
Q 000549 1293 EASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1372 (1431)
Q Consensus 1293 e~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRI 1372 (1431)
+.+|..+|+.|+|+||.++.++|+.++++||.|..++++|+|+++||+|+||+.|++|||||..|||+...||.+|+|||
T Consensus 1293 eqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRI 1372 (1958)
T KOG0391|consen 1293 EQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRI 1372 (1958)
T ss_pred HHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhcC
Q 000549 1373 GQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1431 (1431)
Q Consensus 1373 GQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~~ 1431 (1431)
||+|+|+|||||.+.|||+.|+.....|+.+-+-++.++.. ...-++..+++.||++
T Consensus 1373 GqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdf--Tt~ff~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1373 GQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDF--TTAFFKQRTIRDLFDV 1429 (1958)
T ss_pred cCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCc--cHHHHhhhhHHHHhcC
Confidence 99999999999999999999999999999998888766543 2445777788888874
No 11
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1e-75 Score=684.16 Aligned_cols=545 Identities=30% Similarity=0.472 Sum_probs=390.8
Q ss_pred CCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 000549 658 DGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 737 (1431)
Q Consensus 658 ~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 737 (1431)
|.+++++|+.||..||+|++....... .||||||||||||+|+|+++++.- ++.
T Consensus 561 Pkil~ctLKEYQlkGLnWLvnlYdqGi---NGILADeMGLGKTVQsisvlAhLa--------------E~~--------- 614 (1185)
T KOG0388|consen 561 PKILKCTLKEYQLKGLNWLVNLYDQGI---NGILADEMGLGKTVQSISVLAHLA--------------ETH--------- 614 (1185)
T ss_pred chhhhhhhHHHhhccHHHHHHHHHccc---cceehhhhccchhHHHHHHHHHHH--------------Hhc---------
Confidence 347889999999999999999877543 499999999999999999998642 111
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 000549 738 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 817 (1431)
Q Consensus 738 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~ 817 (1431)
.-.+|.|||+|+|+|.+|++||.+|+| .++++.|.|....+.
T Consensus 615 -----------------------------------nIwGPFLVVtpaStL~NWaqEisrFlP---~~k~lpywGs~~eRk 656 (1185)
T KOG0388|consen 615 -----------------------------------NIWGPFLVVTPASTLHNWAQEISRFLP---SFKVLPYWGSPSERK 656 (1185)
T ss_pred -----------------------------------cCCCceEEeehHHHHhHHHHHHHHhCc---cceeecCcCChhhhH
Confidence 124789999999999999999999998 799999999864432
Q ss_pred -----------cccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCC
Q 000549 818 -----------PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKK 886 (1431)
Q Consensus 818 -----------~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk 886 (1431)
-...+.++||||+|+++-.+ +
T Consensus 657 iLrKfw~rKnmY~rna~fhVviTSYQlvVtD-----------e------------------------------------- 688 (1185)
T KOG0388|consen 657 ILRKFWNRKNMYRRNAPFHVVITSYQLVVTD-----------E------------------------------------- 688 (1185)
T ss_pred HHHHhcchhhhhccCCCceEEEEeeeeeech-----------H-------------------------------------
Confidence 12346789999999998532 1
Q ss_pred CCCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchH
Q 000549 887 GPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYK 966 (1431)
Q Consensus 887 ~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~ 966 (1431)
..|.+++|.++||||||.||...+.+++.+..++++.|++||||||||++.|||++|+|++|..|++..
T Consensus 689 -----------ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshn 757 (1185)
T KOG0388|consen 689 -----------KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHN 757 (1185)
T ss_pred -----------HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchH
Confidence 137789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhccCCCCC-------chhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHH
Q 000549 967 SFCSMIKVPISKN-------PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINS 1039 (1431)
Q Consensus 967 ~F~~~i~~pi~~~-------~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~s 1039 (1431)
+|.+||..-|+.. ..+.+++|+.+|+||||||.|++|.. +|..+++..++|+||..|+.+|+.+....
T Consensus 758 eFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~s-----ELg~Kteidv~CdLs~RQ~~lYq~ik~~i 832 (1185)
T KOG0388|consen 758 EFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVIS-----ELGQKTEIDVYCDLSYRQKVLYQEIKRSI 832 (1185)
T ss_pred HHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHH-----HhccceEEEEEechhHHHHHHHHHHHHHh
Confidence 9999998877543 34568999999999999999999987 89999999999999999999999885432
Q ss_pred HHHHHHHHHccccchhHHHHHHHHHHHHHHccCcccccccCchhhhh-----hHHH--------HHhhchHH---HHHHH
Q 000549 1040 RDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLR-----SSVE--------MAKKLPQE---RQMYL 1103 (1431)
Q Consensus 1040 r~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~-----~s~e--------~a~~l~~e---~~~~l 1103 (1431)
- .+....++++||++|+||.|++.....+.+. ..-. +..++|.- ..+.+
T Consensus 833 S---------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~ 897 (1185)
T KOG0388|consen 833 S---------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEM 897 (1185)
T ss_pred h---------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHH
Confidence 2 1112247899999999999987644321110 0000 00011110 00000
Q ss_pred --HHHhhhhccccccC----CCCCc---cchh--cccC-cccch-----hhhhhhcccCC--------------------
Q 000549 1104 --LNCLEASLAICGIC----NDPPE---DAVV--SICG-HVFCN-----QCICERLTADD-------------------- 1146 (1431)
Q Consensus 1104 --l~~le~~~~~C~iC----~d~~e---~~vi--t~Cg-H~fC~-----~Ci~~~l~~~~-------------------- 1146 (1431)
.+..+.-..+|..- .+++. .+.+ ...| .+|-. ..+...+-...
T Consensus 898 ~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~ 977 (1185)
T KOG0388|consen 898 FRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQR 977 (1185)
T ss_pred HHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhh
Confidence 00001111112111 01110 0000 0111 11100 00000000000
Q ss_pred -CCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCccccc---CCcCCCcccccHHHHHHHHHHHhhcCCCC
Q 000549 1147 -NQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE---APSCEGVWYNSSKIKAALEVLQSLAKPRG 1222 (1431)
Q Consensus 1147 -~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e---~~~~~~~~~~ssKi~allelL~~l~~~~~ 1222 (1431)
..|-.|+.... . .|-....+.+ +++.......+.. .+........|+|+..+-++|.+
T Consensus 978 ~~y~y~P~v~ap----P-----vLI~~ead~P---eId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~k------ 1039 (1185)
T KOG0388|consen 978 HVYCYSPVVAAP----P-----VLISNEADLP---EIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPK------ 1039 (1185)
T ss_pred heeeeccccCCC----C-----eeeecccCCC---CCCccccCcccccceecCcHHhhhccccceeeHHHHHHH------
Confidence 00111000000 0 0000000000 0000000000000 01111112234455444444444
Q ss_pred CcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHhCCCc
Q 000549 1223 NTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDSSIQ 1302 (1431)
Q Consensus 1223 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~gI~ 1302 (1431)
+++.++++|+|.|.|.|+++|+.+|..+|++
T Consensus 1040 -------------------------------------------------LkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ 1070 (1185)
T KOG0388|consen 1040 -------------------------------------------------LKAEGHRVLMYFQMTKMIDLIEDYLVYRGYT 1070 (1185)
T ss_pred -------------------------------------------------hhcCCceEEehhHHHHHHHHHHHHHHhhccc
Confidence 3458999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEE
Q 000549 1303 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLR 1382 (1431)
Q Consensus 1303 ~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~Vyr 1382 (1431)
|+|+||+....+|..+|++|+. ++++|||+||+|||+|+|||+|++|||||..|||+...||++|+||+||||+|+|||
T Consensus 1071 ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1071 YLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred eEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000549 1383 LTVKNTVEDRILALQQKKREMVASAFGEDET 1413 (1431)
Q Consensus 1383 Li~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1413 (1431)
|++++||||+|+++..+|.+....++.+...
T Consensus 1150 l~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~~ 1180 (1185)
T KOG0388|consen 1150 LITRGTVEEKVLERANQKDEVQQMVMHGNIF 1180 (1185)
T ss_pred ecccccHHHHHHHHhhhHHHHHHHHHcCCcc
Confidence 9999999999999999999988888755443
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.5e-69 Score=655.05 Aligned_cols=461 Identities=31% Similarity=0.491 Sum_probs=383.3
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000549 654 ASAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 733 (1431)
Q Consensus 654 ~~~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 733 (1431)
+.+|.-+....|++||+.||.||+....+.+ -||||||||||||+++|+||.+....
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL---NGILADEMGLGKTIQtIsLitYLmE~-------------------- 440 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYNNNL---NGILADEMGLGKTIQTISLITYLMEH-------------------- 440 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccCCCc---ccccchhcccchHHHHHHHHHHHHHH--------------------
Confidence 4567777778899999999999998887664 59999999999999999999874210
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000549 734 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 813 (1431)
Q Consensus 734 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 813 (1431)
....+|.|||||.++|.+|..|+.+|.| .+..++|.|..
T Consensus 441 --------------------------------------K~~~GP~LvivPlstL~NW~~Ef~kWaP---Sv~~i~YkGtp 479 (1157)
T KOG0386|consen 441 --------------------------------------KQMQGPFLIIVPLSTLVNWSSEFPKWAP---SVQKIQYKGTP 479 (1157)
T ss_pred --------------------------------------cccCCCeEEeccccccCCchhhcccccc---ceeeeeeeCCH
Confidence 1224689999999999999999999977 79999999986
Q ss_pred CCCC----cccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCC
Q 000549 814 RTKD----PCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPD 889 (1431)
Q Consensus 814 r~k~----~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~ 889 (1431)
..+. ...-.+|+|++|||+.+.++
T Consensus 480 ~~R~~l~~qir~gKFnVLlTtyEyiikd---------------------------------------------------- 507 (1157)
T KOG0386|consen 480 QQRSGLTKQQRHGKFNVLLTTYEYIIKD---------------------------------------------------- 507 (1157)
T ss_pred HHHhhHHHHHhcccceeeeeeHHHhcCC----------------------------------------------------
Confidence 4432 12237999999999988632
Q ss_pred CcccccccCCccccCccEEEEcCccccCChhhHHHHHHH-hcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHH
Q 000549 890 GLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACW-GLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSF 968 (1431)
Q Consensus 890 ~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~-~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F 968 (1431)
+..|.+|.|..+||||+|+|||..++.+..+. ...+.+|++|||||+||++.|||++|+||-|..|.+...|
T Consensus 508 -------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~F 580 (1157)
T KOG0386|consen 508 -------KALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAF 580 (1157)
T ss_pred -------HHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHH
Confidence 13488999999999999999999999999887 6689999999999999999999999999999999999999
Q ss_pred HhHhccCCCCCch----------hhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHH
Q 000549 969 CSMIKVPISKNPV----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEIN 1038 (1431)
Q Consensus 969 ~~~i~~pi~~~~~----------~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~ 1038 (1431)
..||..|+..... -.+.+|+++|+||+|||.|++|.. +||.+++.+++|++|.-|+.+|..+...
T Consensus 581 eqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~-----~LPdKve~viKC~mSalQq~lY~~m~~~ 655 (1157)
T KOG0386|consen 581 EQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQ-----ELPDKVEDVIKCDMSALQQSLYKQMQNK 655 (1157)
T ss_pred HHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhh-----hCchhhhHhhheehhhhhHhhhHHHHhC
Confidence 9999999976542 126899999999999999999987 8999999999999999999999887532
Q ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCC
Q 000549 1039 SRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICN 1118 (1431)
Q Consensus 1039 sr~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~ 1118 (1431)
-+... .....+..+..+...++.||++|+||+++...+.. |..|.
T Consensus 656 g~l~~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~-------------------------------~~~~~ 700 (1157)
T KOG0386|consen 656 GQLLK----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS-------------------------------YTLHY 700 (1157)
T ss_pred CCCCc----CchhccccchhhhhHhHHHHHhcCCchhhhhhccc-------------------------------ccccc
Confidence 21110 11122345566778899999999999887432110 00000
Q ss_pred CCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCC
Q 000549 1119 DPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCE 1198 (1431)
Q Consensus 1119 d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~ 1198 (1431)
++ .
T Consensus 701 ~~-----------------------------------------------------------------------------~ 703 (1157)
T KOG0386|consen 701 DI-----------------------------------------------------------------------------K 703 (1157)
T ss_pred Ch-----------------------------------------------------------------------------h
Confidence 00 0
Q ss_pred CcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCe
Q 000549 1199 GVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEK 1278 (1431)
Q Consensus 1199 ~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~K 1278 (1431)
..+..++|++.+-.+|-+ +++.+++
T Consensus 704 dL~R~sGKfELLDRiLPK-------------------------------------------------------LkatgHR 728 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPK-------------------------------------------------------LKATGHR 728 (1157)
T ss_pred HHHHhccHHHHHHhhhHH-------------------------------------------------------HHhcCcc
Confidence 111235666555555544 3448999
Q ss_pred EEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEEEcCCC
Q 000549 1279 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWW 1357 (1431)
Q Consensus 1279 vIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W 1357 (1431)
|+.|+|.|+++++++.+|.-.++.|+|+||+++.++|..+++.||.. ..+++||+|++|||+|||||.|++||+||..|
T Consensus 729 VLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdw 808 (1157)
T KOG0386|consen 729 VLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW 808 (1157)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCC
Confidence 99999999999999999999999999999999999999999999984 46999999999999999999999999999999
Q ss_pred CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Q 000549 1358 NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1409 (1431)
Q Consensus 1358 NP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg 1409 (1431)
||..+.||.+|+|||||+++|.|.||++-++|||+|++.+..|..+...++.
T Consensus 809 np~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviq 860 (1157)
T KOG0386|consen 809 NPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQ 860 (1157)
T ss_pred CchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhh
Confidence 9999999999999999999999999999999999999999999887766653
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-66 Score=640.12 Aligned_cols=494 Identities=27% Similarity=0.388 Sum_probs=385.7
Q ss_pred CCCCccCCCcHHHHHHHHHHHHhhccCC---CCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccc
Q 000549 657 PDGVLAVPLLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEE 733 (1431)
Q Consensus 657 P~g~l~~~L~phQk~al~wMl~rE~~~~---~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~ 733 (1431)
++..++-.|+|||++|+.||++...+.. ...|+|+||+||+|||+++|++|......
T Consensus 231 ~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-------------------- 290 (776)
T KOG0390|consen 231 IDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-------------------- 290 (776)
T ss_pred ecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh--------------------
Confidence 3445677799999999999998776552 45889999999999999999999764321
Q ss_pred ccccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 000549 734 DNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS 813 (1431)
Q Consensus 734 ~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~ 813 (1431)
.|.. .+.+..+|||||.+|+.+|++|+.||... ..+..+.+.|..
T Consensus 291 --------------~P~~--------------------~~~~~k~lVV~P~sLv~nWkkEF~KWl~~-~~i~~l~~~~~~ 335 (776)
T KOG0390|consen 291 --------------FPQA--------------------KPLINKPLVVAPSSLVNNWKKEFGKWLGN-HRINPLDFYSTK 335 (776)
T ss_pred --------------CcCc--------------------cccccccEEEccHHHHHHHHHHHHHhccc-cccceeeeeccc
Confidence 0000 01235689999999999999999999763 478888888877
Q ss_pred CCC---------CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccC
Q 000549 814 RTK---------DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQ 884 (1431)
Q Consensus 814 r~k---------~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~ 884 (1431)
+.. .....-.+-|.|.+|++++..+
T Consensus 336 ~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~---------------------------------------------- 369 (776)
T KOG0390|consen 336 KSSWIKLKSILFLGYKQFTTPVLIISYETASDYC---------------------------------------------- 369 (776)
T ss_pred chhhhhhHHHHHhhhhheeEEEEeccHHHHHHHH----------------------------------------------
Confidence 641 0111223458889999886321
Q ss_pred CCCCCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccc
Q 000549 885 KKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAV 964 (1431)
Q Consensus 885 kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~ 964 (1431)
..+....+++||+||+|+.||..+.+++++..|+..+|++|||||+||++.|++++|.|.+|+.++.
T Consensus 370 -------------~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs 436 (776)
T KOG0390|consen 370 -------------RKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGS 436 (776)
T ss_pred -------------HHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccc
Confidence 1144566789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhHhccCCCCCch-----------hhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 000549 965 YKSFCSMIKVPISKNPV-----------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYS 1033 (1431)
Q Consensus 965 ~~~F~~~i~~pi~~~~~-----------~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~ 1033 (1431)
...|...+..|+.+... ..++.|+.++..|++||+-..+.+ .||++.+.++.+.+++.|+++|.
T Consensus 437 ~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k-----~LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 437 ISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLK-----YLPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred hHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhh-----hCCCceeEEEEeCCcHHHHHHHH
Confidence 99999999998866332 236779999999999999966655 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccc
Q 000549 1034 QLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAI 1113 (1431)
Q Consensus 1034 ~L~~~sr~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~ 1113 (1431)
.+.... . ...+ .| + .|..++.|+++|+||.|+...+.
T Consensus 512 ~l~~~~-~-~~~~--~~-----~--~l~~~~~L~k~cnhP~L~~~~~~-------------------------------- 548 (776)
T KOG0390|consen 512 KLLDSM-K-MRTL--KG-----Y--ALELITKLKKLCNHPSLLLLCEK-------------------------------- 548 (776)
T ss_pred HHHHHH-H-hhhh--hc-----c--hhhHHHHHHHHhcCHHhhccccc--------------------------------
Confidence 986542 1 0111 01 1 57778899999999988731100
Q ss_pred cccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCccccc
Q 000549 1114 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVE 1193 (1431)
Q Consensus 1114 C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e 1193 (1431)
|.. ++. .+....+.. ....
T Consensus 549 ---~~~----------------------------------e~~------~~~~~~~~~-----------------~~~~- 567 (776)
T KOG0390|consen 549 ---TEK----------------------------------EKA------FKNPALLLD-----------------PGKL- 567 (776)
T ss_pred ---ccc----------------------------------ccc------ccChHhhhc-----------------cccc-
Confidence 000 000 000000000 0000
Q ss_pred CCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccc
Q 000549 1194 APSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIK 1273 (1431)
Q Consensus 1194 ~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~ 1273 (1431)
.........+.|+..++.+|..+.+
T Consensus 568 -~~~~~~~~ks~kl~~L~~ll~~~~e------------------------------------------------------ 592 (776)
T KOG0390|consen 568 -KLDAGDGSKSGKLLVLVFLLEVIRE------------------------------------------------------ 592 (776)
T ss_pred -ccccccchhhhHHHHHHHHHHHHhh------------------------------------------------------
Confidence 0000111236777777777644210
Q ss_pred cCCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCEEEE
Q 000549 1274 LGGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1274 ~~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v-~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
....|+++-++++.++++++..++-+|+.++++||+|+..+|+.+|+.||+.+.. +|||+|++|||+||||++|+|||+
T Consensus 593 k~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 593 KLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred hcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 1457899999999999999999999999999999999999999999999997665 999999999999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000549 1353 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1353 lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~ 1430 (1431)
|||.|||+++.|||+||||.||+|+|+||||++.||+||+|+++|..|..+-..+|+.++.. ......++++.||.
T Consensus 673 ~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~--~~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 673 FDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDV--EKHFFTEDLKTLFD 748 (776)
T ss_pred eCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEeccccc--ccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999876642 22344478888885
No 14
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.2e-62 Score=584.73 Aligned_cols=595 Identities=24% Similarity=0.306 Sum_probs=384.7
Q ss_pred cCCCcHHHHHHHHHHHHhhc------cCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000549 662 AVPLLRHQRIALSWMVQKET------SSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 735 (1431)
Q Consensus 662 ~~~L~phQk~al~wMl~rE~------~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 735 (1431)
...|.|||..||.||+.--- ....+.||||||=||||||+|.|+++......
T Consensus 666 v~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c---------------------- 723 (1567)
T KOG1015|consen 666 VIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLC---------------------- 723 (1567)
T ss_pred HhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHh----------------------
Confidence 34699999999999997322 22356899999999999999999998543210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC---CCCcEEEEEeCC
Q 000549 736 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS---KGSLSVLVYHGS 812 (1431)
Q Consensus 736 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~---~~~L~Vlvy~G~ 812 (1431)
. ..-.+++|||||.+++.||.+|+++|.+. ...|.|.-+...
T Consensus 724 -----------------~------------------klg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 724 -----------------D------------------KLGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred -----------------h------------------ccCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhc
Confidence 0 01135689999999999999999999873 124555555544
Q ss_pred CCCCCc-cc----ccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCC
Q 000549 813 SRTKDP-CE----LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 887 (1431)
Q Consensus 813 ~r~k~~-~~----L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~ 887 (1431)
.+..+. .. ...-.|.|+.|+++++.-.. +..| .|+
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~g----------------------------r~vk-----~rk------- 808 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQG----------------------------RNVK-----SRK------- 808 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhcc----------------------------cchh-----hhH-------
Confidence 443221 11 13557999999999853210 0000 000
Q ss_pred CCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHH
Q 000549 888 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 967 (1431)
Q Consensus 888 ~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~ 967 (1431)
..+.....|..-+.++||+||||.|||..+.+++|+..+++++|++|||||+||++.|+|.+++|++++.+++..+
T Consensus 809 ----~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~E 884 (1567)
T KOG1015|consen 809 ----LKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKE 884 (1567)
T ss_pred ----HHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHH
Confidence 0112233466778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhccCCCCCch------------hhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHH
Q 000549 968 FCSMIKVPISKNPV------------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1035 (1431)
Q Consensus 968 F~~~i~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L 1035 (1431)
|.++|.+||.++.. .+-+.|..+|+.++-|+-...+.. .|||+++.++.|.||+.|+.+|+.+
T Consensus 885 frNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk-----~LPPK~eyVi~vrltelQ~~LYq~y 959 (1567)
T KOG1015|consen 885 FRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTK-----FLPPKHEYVIAVRLTELQCKLYQYY 959 (1567)
T ss_pred HHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----cCCCceeEEEEEeccHHHHHHHHHH
Confidence 99999999988753 223568899999999988877765 7999999999999999999999987
Q ss_pred HHHHHHHHHHHHHcc-ccc---hhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhc
Q 000549 1036 EINSRDQFKEYAAAG-TVK---QNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASL 1111 (1431)
Q Consensus 1036 ~~~sr~~~~~~~~~g-~~~---~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~ 1111 (1431)
... . ...| .+. ....++|+.+.-|+++..||..+.-.... .+ .+.+..+ ..
T Consensus 960 L~h-~------~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~------~e-nkR~~se-----------dd 1014 (1567)
T KOG1015|consen 960 LDH-L------TGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSIS------KE-NKRYFSE-----------DD 1014 (1567)
T ss_pred Hhh-c------cccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhh------hh-hcccccc-----------cc
Confidence 541 1 1111 111 24567888888999999999754311100 00 0000000 00
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhccc-CCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcc
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTA-DDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSK 1190 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~-~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~ 1190 (1431)
..-.||.+..++.....- ..+|..--.-.+.. +.+.--. .-........+... . .......+
T Consensus 1015 m~~fi~D~sde~e~s~~s-~d~~~~~ks~~~s~~Desss~~-~~~g~~ev~k~k~r-----k----------~r~~~~~~ 1077 (1567)
T KOG1015|consen 1015 MDEFIADDSDETEMSLSS-DDYTKKKKSGKKSKKDESSSGS-GSDGDVEVIKVKNR-----K----------SRGGGEGN 1077 (1567)
T ss_pred hhccccCCCccccccccc-cchhhccccccccccccccccc-ccCCchhhhhhhhh-----h----------ccccccCc
Confidence 111222222111110000 00000000000000 0000000 00000000000000 0 00000000
Q ss_pred cccCCcCCCcccccHHHHHHHHHHHhhcCCCCC--cccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhc
Q 000549 1191 LVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGN--TVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCS 1268 (1431)
Q Consensus 1191 ~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 1268 (1431)
+.+. + .-....+.+++.+...... .+.+.+...-... . -......+.++-+|-+|
T Consensus 1078 ~~~~----g-----~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e-~-d~~v~~~SgKmiLLleI------------ 1134 (1567)
T KOG1015|consen 1078 VDET----G-----NNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTE-A-DAEVLEHSGKMILLLEI------------ 1134 (1567)
T ss_pred cccc----C-----CCcchHHHHhhcccccccCCCCCchHhHHhhhhh-h-hhhhhhcCcceehHHHH------------
Confidence 0000 0 0000112222222110000 0000000000000 0 00000011111111111
Q ss_pred ccccccCCCeEEEEcccHHHHHHHHHHHHh----------------------CCCcEEecCCCCCHHHHHHHHHHHhcCC
Q 000549 1269 IDSIKLGGEKAIVFSQWTKMLDLLEASLKD----------------------SSIQYRRLDGTMSVFARDKAVKDFNTLP 1326 (1431)
Q Consensus 1269 ~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~----------------------~gI~~~rldGsms~~qR~~aI~~Fn~d~ 1326 (1431)
+..+..-|.|+|||||....||+|+.+|.. .|..|.||||++...+|+++.++||+..
T Consensus 1135 L~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~ 1214 (1567)
T KOG1015|consen 1135 LRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPT 1214 (1567)
T ss_pred HHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcc
Confidence 112334689999999999999999999973 2678999999999999999999999854
Q ss_pred C--ccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000549 1327 E--VSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1404 (1431)
Q Consensus 1327 ~--v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~ 1404 (1431)
+ .+.+|+||+||++|+||.+||||||+|-.|||....|+|=||||+||++||+||||++.+|+|++||.+|-.|+.++
T Consensus 1215 NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls 1294 (1567)
T KOG1015|consen 1215 NLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLS 1294 (1567)
T ss_pred cceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhh
Confidence 4 66799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcCcccccCCHHHHHHhhc
Q 000549 1405 ASAFGEDETGGQQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1405 ~~~lg~d~~~~~~~~lt~~DL~~LF~ 1430 (1431)
..++++... ....+..||..||.
T Consensus 1295 ~RVVDeqQv---~Rhy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1295 FRVVDEQQV---ERHYTMNELTELYT 1317 (1567)
T ss_pred hhhhhHHHH---HHHhhHhhhHHHhh
Confidence 999976543 34588899988885
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-61 Score=631.69 Aligned_cols=495 Identities=38% Similarity=0.580 Sum_probs=396.5
Q ss_pred CCccCCCcHHHHHHHHHHHH-hhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccc
Q 000549 659 GVLAVPLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 737 (1431)
Q Consensus 659 g~l~~~L~phQk~al~wMl~-rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 737 (1431)
..+...|++||.+|+.||.. ... ...|||||||||||||+++|+++......
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~---~~~~~ilaD~mglGKTiq~i~~l~~~~~~------------------------ 385 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRS---NLLGGILADDMGLGKTVQTIALLLSLLES------------------------ 385 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHh---ccCCCcccccccchhHHHHHHHHHhhhhc------------------------
Confidence 34556799999999999994 333 23789999999999999999999752211
Q ss_pred ccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcE-EEEEeCCCCC-
Q 000549 738 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLS-VLVYHGSSRT- 815 (1431)
Q Consensus 738 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~-Vlvy~G~~r~- 815 (1431)
...+.++.|||||.+++.+|.+|+.+|.+ .++ +.+++|....
T Consensus 386 ---------------------------------~~~~~~~~liv~p~s~~~nw~~e~~k~~~---~~~~~~~~~g~~~~~ 429 (866)
T COG0553 386 ---------------------------------IKVYLGPALIVVPASLLSNWKREFEKFAP---DLRLVLVYHGEKSEL 429 (866)
T ss_pred ---------------------------------ccCCCCCeEEEecHHHHHHHHHHHhhhCc---cccceeeeeCCcccc
Confidence 00113579999999999999999998876 577 9999998862
Q ss_pred ----CCcccccC------CCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCC
Q 000549 816 ----KDPCELAK------FDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQK 885 (1431)
Q Consensus 816 ----k~~~~L~~------~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~k 885 (1431)
.....+.+ +|+++|||+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~----------------------------------------------- 462 (866)
T COG0553 430 DKKREALRDLLKLHLVIIFDVVITTYELLRRFL----------------------------------------------- 462 (866)
T ss_pred cHHHHHHHHHhhhcccceeeEEechHHHHHHhh-----------------------------------------------
Confidence 22223333 899999999997421
Q ss_pred CCCCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhh-ccccCCcc-
Q 000549 886 KGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFR-FLRYDPFA- 963 (1431)
Q Consensus 886 k~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~-FL~p~~f~- 963 (1431)
.....+..+.|+++|+||||+|||..+..++++..+++.+||+|||||++|++.|||++++ |+.|..+.
T Consensus 463 ---------~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~ 533 (866)
T COG0553 463 ---------VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGT 533 (866)
T ss_pred ---------hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccc
Confidence 0012367889999999999999999999999999999999999999999999999999999 99999999
Q ss_pred chHHHHhHhccCCCCCch--------hhHHHHHHHHhhhhhhhcccc--ccCCCCccCCCCcEEEEEEecCCHHHHHHHH
Q 000549 964 VYKSFCSMIKVPISKNPV--------KGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYS 1033 (1431)
Q Consensus 964 ~~~~F~~~i~~pi~~~~~--------~~~~~L~~lL~~~mLRRtK~d--V~dg~pii~LPpk~e~vv~v~lS~eEre~Y~ 1033 (1431)
....|..+|..|+..... ....+|+.++.+|++||+|.+ +.. .||++.+.++.++++.+|+.+|.
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~-----~Lp~k~e~~~~~~l~~~q~~~y~ 608 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLK-----ELPPKIEKVLECELSEEQRELYE 608 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHH-----hCChhhhhhhhhcccHHHHHHHH
Confidence 569999999998876543 334558899999999999999 654 89999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHcccc--ch--hHHHHHHHHHHHHHHccCcccccccC-chhhhhhHHHHHhhchHHHHHHHHH
Q 000549 1034 QLEI---NSRDQFKEYAAAGTV--KQ--NYVNILLMLLRLRQACDHPLLVKGFD-SNSLLRSSVEMAKKLPQERQMYLLN 1105 (1431)
Q Consensus 1034 ~L~~---~sr~~~~~~~~~g~~--~~--~~~~IL~~LlrLRq~c~HP~Lv~~~~-~~s~~~~s~e~a~~l~~e~~~~ll~ 1105 (1431)
.+.. .....+......+.. .. ...+++..+++||++|+||.++.... ...
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~---------------------- 666 (866)
T COG0553 609 ALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF---------------------- 666 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc----------------------
Confidence 9887 444444433332211 11 36789999999999999998874321 000
Q ss_pred HhhhhccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCC
Q 000549 1106 CLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD 1185 (1431)
Q Consensus 1106 ~le~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~ 1185 (1431)
+..+.....+.....|
T Consensus 667 --------~~~~~~~~~~~~~~~~-------------------------------------------------------- 682 (866)
T COG0553 667 --------DRIVLLLREDKDFDYL-------------------------------------------------------- 682 (866)
T ss_pred --------chhhhhhhcccccccc--------------------------------------------------------
Confidence 0000000000000000
Q ss_pred CCCcccccCCcCCCccccc-HHHHHHHHHH-HhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHH
Q 000549 1186 YSDSKLVEAPSCEGVWYNS-SKIKAALEVL-QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKI 1263 (1431)
Q Consensus 1186 ~s~~~~~e~~~~~~~~~~s-sKi~allelL-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 1263 (1431)
.......+ .|+..+.++| ..+
T Consensus 683 -----------~~~~~~~s~~k~~~l~~ll~~~~---------------------------------------------- 705 (866)
T COG0553 683 -----------KKPLIQLSKGKLQALDELLLDKL---------------------------------------------- 705 (866)
T ss_pred -----------cchhhhccchHHHHHHHHHHHHH----------------------------------------------
Confidence 00111234 6777777777 332
Q ss_pred HhhhcccccccCCC--eEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccc
Q 000549 1264 AAKCSIDSIKLGGE--KAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLG 1341 (1431)
Q Consensus 1264 ~~~~~~~~i~~~~~--KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~G 1341 (1431)
...+. |+|||+||+.++++|+..|+..++.|++++|+++..+|+.++++|+++++..|+++|++|||.|
T Consensus 706 ---------~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~g 776 (866)
T COG0553 706 ---------LEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLG 776 (866)
T ss_pred ---------HhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccc
Confidence 11455 9999999999999999999999999999999999999999999999988899999999999999
Q ss_pred cCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCC
Q 000549 1342 LNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLT 1421 (1431)
Q Consensus 1342 LNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt 1421 (1431)
|||+.|++||++||||||+++.||++|+|||||+++|.|||+++++|+||+|+++|..|+.+...+++. +.......++
T Consensus 777 lnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~-~~~~~~~~~~ 855 (866)
T COG0553 777 LNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA-EGEKELSKLS 855 (866)
T ss_pred eeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh-hcccchhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 2235678899
Q ss_pred HHHHHHhhc
Q 000549 1422 VDDLNYLFM 1430 (1431)
Q Consensus 1422 ~~DL~~LF~ 1430 (1431)
.+++..||.
T Consensus 856 ~~~~~~l~~ 864 (866)
T COG0553 856 IEDLLDLFS 864 (866)
T ss_pred HHHHHHHhc
Confidence 999999986
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9.9e-56 Score=519.08 Aligned_cols=585 Identities=25% Similarity=0.338 Sum_probs=387.0
Q ss_pred cCCCcHHHHHHHHHHHHhhccC------CCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccc
Q 000549 662 AVPLLRHQRIALSWMVQKETSS------LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDN 735 (1431)
Q Consensus 662 ~~~L~phQk~al~wMl~rE~~~------~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~ 735 (1431)
.--|.|||.-|+.||....-.+ .-++|||||+.||||||+|.|+++-....
T Consensus 252 a~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR----------------------- 308 (1387)
T KOG1016|consen 252 AHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR----------------------- 308 (1387)
T ss_pred HhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-----------------------
Confidence 3348999999999998643221 24689999999999999999998743210
Q ss_pred ccccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcC--------CCCcEEE
Q 000549 736 GIQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTS--------KGSLSVL 807 (1431)
Q Consensus 736 ~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~--------~~~L~Vl 807 (1431)
..+++.+|+|+|-++|.+|-.|+..|++. +..+.|+
T Consensus 309 ------------------------------------hT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf 352 (1387)
T KOG1016|consen 309 ------------------------------------HTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVF 352 (1387)
T ss_pred ------------------------------------cCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEE
Confidence 12356799999999999999999999984 2345666
Q ss_pred EEeCCCCCCC-----cccc-cCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCcccc
Q 000549 808 VYHGSSRTKD-----PCEL-AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKG 881 (1431)
Q Consensus 808 vy~G~~r~k~-----~~~L-~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~ 881 (1431)
+.....++-+ ..++ ....|+|+.|++++-...+. .. ..+- ....++|-.+...+-..
T Consensus 353 ~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~------------~~-~~gr----pkkt~kr~~~~~i~~d~ 415 (1387)
T KOG1016|consen 353 LLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKT------------LP-KKGR----PKKTLKRISSGFIKDDS 415 (1387)
T ss_pred EecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhc------------cc-ccCC----ccccccccCCcccCCch
Confidence 6654433221 1122 35679999999997432110 00 0000 00000000000000000
Q ss_pred ccCCCCCCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCC
Q 000549 882 SKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDP 961 (1431)
Q Consensus 882 ~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~ 961 (1431)
...+ ..++..+...|.+-+.++||+||+|+|||....++.++..+++++|+.|||-|+||++-|.|.++.|++|..
T Consensus 416 eD~~----qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~y 491 (1387)
T KOG1016|consen 416 EDQR----QEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKY 491 (1387)
T ss_pred hhhH----HHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccc
Confidence 0000 112334556688889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHhHhccCCCCCch------------hhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHH
Q 000549 962 FAVYKSFCSMIKVPISKNPV------------KGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEER 1029 (1431)
Q Consensus 962 f~~~~~F~~~i~~pi~~~~~------------~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEr 1029 (1431)
+++.++|+.+|.+||..+.- .+...|+.+|..|+-||+...+. +.||.+.+.++.|.+|..||
T Consensus 492 LGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk-----~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 492 LGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLK-----KILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred cchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHh-----hhcccccceEEEEeHHHHHH
Confidence 99999999999999987631 22456899999999999987665 48999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhh
Q 000549 1030 DFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEA 1109 (1431)
Q Consensus 1030 e~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~ 1109 (1431)
++|..+.-... .+.+..+ ....|-|.+.--..++.+||..+-.+-. ....+...++.-+. + ....
T Consensus 567 ~LY~~Fm~d~~---r~~~~~~---~~~~NPLkAF~vCcKIWNHPDVLY~~l~----k~~~a~e~dl~vee---~--~~ag 631 (1387)
T KOG1016|consen 567 QLYRNFMLDAK---REIAANN---DAVFNPLKAFSVCCKIWNHPDVLYRLLE----KKKRAEEDDLRVEE---M--KFAG 631 (1387)
T ss_pred HHHHHHHHHHH---Hhhcccc---ccccChHHHHHHHHHhcCChHHHHHHHH----HhhhhhhhhhhHHH---H--hhhc
Confidence 99998753322 2222221 1122456666677788899976532100 00000000110000 0 0001
Q ss_pred hccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCC-CCC
Q 000549 1110 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTD-YSD 1188 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~-~s~ 1188 (1431)
..+.|+--+.++.++-.+ + .+-.++.+....-. ......|.. ..+
T Consensus 632 ~~~~~~P~~~~~~~~s~~------------------------------l--aSs~~k~~n~t~kp--~~s~~~p~f~ee~ 677 (1387)
T KOG1016|consen 632 LQQQQSPFNSIPSNPSTP------------------------------L--ASSTSKSANKTKKP--RGSKKAPKFDEED 677 (1387)
T ss_pred ccccCCCCCCCCCCCCCc------------------------------c--cchhhhhhcccCCc--ccCcCCCCccccc
Confidence 112232222222111000 0 00011111100000 000000110 001
Q ss_pred cccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCC-CcccccchhhHHHHhhh
Q 000549 1189 SKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGG-DTLDNISDENEKIAAKC 1267 (1431)
Q Consensus 1189 ~~~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~ 1267 (1431)
.+++.+ + ....+++..... ..+. ...+. -.+..+.
T Consensus 678 ~e~~~y---------~---~w~~el~~nYq~--------gvLe--------------n~pk~V~~~~~~d---------- 713 (1387)
T KOG1016|consen 678 EEVEKY---------S---DWTFELFENYQE--------GVLE--------------NGPKIVISLEILD---------- 713 (1387)
T ss_pred ccccch---------h---hHHHHHHhhhhc--------cccc--------------CCCceEEEEeeec----------
Confidence 111110 0 223333333210 0000 00000 0111111
Q ss_pred cccccccCCCeEEEEcccHHHHHHHHHHHHhC------------------CCcEEecCCCCCHHHHHHHHHHHhcCCCcc
Q 000549 1268 SIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS------------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVS 1329 (1431)
Q Consensus 1268 ~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~~------------------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~ 1329 (1431)
.-..-++|+|||||....|++|+..|.++ .+.|.+++|.++..+|+++|++||..++..
T Consensus 714 ---es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~ls 790 (1387)
T KOG1016|consen 714 ---ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLS 790 (1387)
T ss_pred ---cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCce
Confidence 11236899999999999999999999875 245899999999999999999999988877
Q ss_pred -EEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Q 000549 1330 -VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAF 1408 (1431)
Q Consensus 1330 -VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~l 1408 (1431)
.+|+|+++|..|+||..|+++|++|..|||....||++||+|+||+|+++||||++.+|+|.+|+++|-+|+.|.+.++
T Consensus 791 Wlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvV 870 (1387)
T KOG1016|consen 791 WLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVV 870 (1387)
T ss_pred eeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhh
Confidence 7888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCcccccCCHHHHHHhhc
Q 000549 1409 GEDETGGQQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1409 g~d~~~~~~~~lt~~DL~~LF~ 1430 (1431)
++-. -...++..||..|.+
T Consensus 871 Dd~n---p~an~s~Ke~enLl~ 889 (1387)
T KOG1016|consen 871 DDAN---PDANISQKELENLLM 889 (1387)
T ss_pred cccC---ccccccHHHHHHHhh
Confidence 7643 356789999988865
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-52 Score=478.14 Aligned_cols=418 Identities=29% Similarity=0.359 Sum_probs=320.8
Q ss_pred ccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000549 661 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 740 (1431)
Q Consensus 661 l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 740 (1431)
+--.|+|||++||.|.++|. +..|||||||||||+|||++..+.+..
T Consensus 195 Lvs~LlPFQreGv~faL~Rg------GR~llADeMGLGKTiQAlaIA~yyraE--------------------------- 241 (689)
T KOG1000|consen 195 LVSRLLPFQREGVIFALERG------GRILLADEMGLGKTIQALAIARYYRAE--------------------------- 241 (689)
T ss_pred HHHhhCchhhhhHHHHHhcC------CeEEEecccccchHHHHHHHHHHHhhc---------------------------
Confidence 34469999999999999652 336999999999999999998765422
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCcc
Q 000549 741 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGS-SRTKDPC 819 (1431)
Q Consensus 741 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~-~r~k~~~ 819 (1431)
+|.|||||+++...|++++.+|++.-. .+.+..+. .+..+.
T Consensus 242 -----------------------------------wplliVcPAsvrftWa~al~r~lps~~--pi~vv~~~~D~~~~~- 283 (689)
T KOG1000|consen 242 -----------------------------------WPLLIVCPASVRFTWAKALNRFLPSIH--PIFVVDKSSDPLPDV- 283 (689)
T ss_pred -----------------------------------CcEEEEecHHHhHHHHHHHHHhccccc--ceEEEecccCCcccc-
Confidence 468999999999999999999998432 34444333 222111
Q ss_pred cccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCC
Q 000549 820 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 899 (1431)
Q Consensus 820 ~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~p 899 (1431)
-..-.|+|++|+.+...- ..
T Consensus 284 -~t~~~v~ivSye~ls~l~-----------------------------------------------------------~~ 303 (689)
T KOG1000|consen 284 -CTSNTVAIVSYEQLSLLH-----------------------------------------------------------DI 303 (689)
T ss_pred -ccCCeEEEEEHHHHHHHH-----------------------------------------------------------HH
Confidence 123359999999986420 11
Q ss_pred ccccCccEEEEcCccccCChhhHHHHHHHhc--ccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHhccCCC
Q 000549 900 LAKVGWFRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 977 (1431)
Q Consensus 900 L~~i~W~rVILDEAH~IKN~~T~~skal~~L--~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i~~pi~ 977 (1431)
|..-+|..||+||+|++|+.++++.+++..+ .+++.++|||||.-.++.|||.+++.+.+..|.++.+|..+|+.--.
T Consensus 304 l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~ 383 (689)
T KOG1000|consen 304 LKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQ 383 (689)
T ss_pred HhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccc
Confidence 4444699999999999999999999998887 79999999999999999999999999999999999999998875332
Q ss_pred C------CchhhHHHHHHHHh-hhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000549 978 K------NPVKGYKKLQAVLK-TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAG 1050 (1431)
Q Consensus 978 ~------~~~~~~~~L~~lL~-~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g 1050 (1431)
- ..-.+..+|+.+|. .+|+||+|.+|+. +|||+..+++.+ .+..+-+.-+.+...+ ++ +
T Consensus 384 vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~-----qLPpKrr~Vv~~-~~gr~da~~~~lv~~a-------~~-~ 449 (689)
T KOG1000|consen 384 VRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK-----QLPPKRREVVYV-SGGRIDARMDDLVKAA-------AD-Y 449 (689)
T ss_pred cceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh-----hCCccceEEEEE-cCCccchHHHHHHHHh-------hh-c
Confidence 1 12234677877775 4699999999987 899996555544 3332222222221111 11 1
Q ss_pred ccchhH-HHHHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccchhccc
Q 000549 1051 TVKQNY-VNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSIC 1129 (1431)
Q Consensus 1051 ~~~~~~-~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~C 1129 (1431)
+..... .+-+.+++..++
T Consensus 450 t~~~~~e~~~~~l~l~y~~------------------------------------------------------------- 468 (689)
T KOG1000|consen 450 TKVNSMERKHESLLLFYSL------------------------------------------------------------- 468 (689)
T ss_pred chhhhhhhhhHHHHHHHHH-------------------------------------------------------------
Confidence 100000 000000000000
Q ss_pred CcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHH
Q 000549 1130 GHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKA 1209 (1431)
Q Consensus 1130 gH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~a 1209 (1431)
..-.|+.+
T Consensus 469 ------------------------------------------------------------------------tgiaK~~a 476 (689)
T KOG1000|consen 469 ------------------------------------------------------------------------TGIAKAAA 476 (689)
T ss_pred ------------------------------------------------------------------------hcccccHH
Confidence 01245566
Q ss_pred HHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHH
Q 000549 1210 ALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKML 1289 (1431)
Q Consensus 1210 llelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~L 1289 (1431)
+.+.|....- + ...++.|++||+.+..+|
T Consensus 477 v~eyi~~~~~---------------------------------l------------------~d~~~~KflVFaHH~~vL 505 (689)
T KOG1000|consen 477 VCEYILENYF---------------------------------L------------------PDAPPRKFLVFAHHQIVL 505 (689)
T ss_pred HHHHHHhCcc---------------------------------c------------------ccCCCceEEEEehhHHHH
Confidence 6666554100 0 112789999999999999
Q ss_pred HHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhh
Q 000549 1290 DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRA 1369 (1431)
Q Consensus 1290 dlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRv 1369 (1431)
|-|+..+.++++.++||||+++..+|+.+++.|+.+.+++|-|+|..|+|.||.|++|+.|+|.+++|||....||.||+
T Consensus 506 d~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRa 585 (689)
T KOG1000|consen 506 DTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRA 585 (689)
T ss_pred HHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000549 1370 HRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1407 (1431)
Q Consensus 1370 hRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~ 1407 (1431)
||+|||..|.|++|++++|+||.++.+.++|...+.++
T Consensus 586 HRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000|consen 586 HRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred hhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999988766
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=5.8e-52 Score=532.33 Aligned_cols=420 Identities=20% Similarity=0.281 Sum_probs=314.0
Q ss_pred ccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000549 661 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 740 (1431)
Q Consensus 661 l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 740 (1431)
..+.|+|||...+.+++++. ..+.|||||||||||++|++++....
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~-----~~R~LLADEvGLGKTIeAglil~~l~----------------------------- 194 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRH-----APRVLLADEVGLGKTIEAGMIIHQQL----------------------------- 194 (956)
T ss_pred CCCCCCHHHHHHHHHHhhcc-----CCCEEEEeCCcCcHHHHHHHHHHHHH-----------------------------
Confidence 35679999999999887653 25689999999999999977764321
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC----C
Q 000549 741 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 816 (1431)
Q Consensus 741 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~----k 816 (1431)
.....+++|||||++|+.||..|+.+++. +.+.+|.+..-. .
T Consensus 195 ------------------------------~~g~~~rvLIVvP~sL~~QW~~El~~kF~----l~~~i~~~~~~~~~~~~ 240 (956)
T PRK04914 195 ------------------------------LTGRAERVLILVPETLQHQWLVEMLRRFN----LRFSLFDEERYAEAQHD 240 (956)
T ss_pred ------------------------------HcCCCCcEEEEcCHHHHHHHHHHHHHHhC----CCeEEEcCcchhhhccc
Confidence 01234679999999999999999998875 556666554311 1
Q ss_pred CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccc
Q 000549 817 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 896 (1431)
Q Consensus 817 ~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~ 896 (1431)
....+..+++||+||+.+...- ..
T Consensus 241 ~~~pf~~~~~vI~S~~~l~~~~---------~~----------------------------------------------- 264 (956)
T PRK04914 241 ADNPFETEQLVICSLDFLRRNK---------QR----------------------------------------------- 264 (956)
T ss_pred ccCccccCcEEEEEHHHhhhCH---------HH-----------------------------------------------
Confidence 1234457899999999996420 00
Q ss_pred cCCccccCccEEEEcCccccCCh---hhHHHHHHHhc--ccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhH
Q 000549 897 AGPLAKVGWFRVVLDEAQSIKNH---RTQVARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 971 (1431)
Q Consensus 897 ~~pL~~i~W~rVILDEAH~IKN~---~T~~skal~~L--~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~ 971 (1431)
...+....|++|||||||++|+. .++.++++..| +++++++|||||++|++.|+|++|+||+|+.|.++..|...
T Consensus 265 ~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e 344 (956)
T PRK04914 265 LEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEE 344 (956)
T ss_pred HHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHH
Confidence 01144568999999999999953 46778888888 67899999999999999999999999999999999999764
Q ss_pred hcc--CC--------CCC--chhhHHHH-------------------------------HHHH-----hhhhhhhccccc
Q 000549 972 IKV--PI--------SKN--PVKGYKKL-------------------------------QAVL-----KTIMLRRTKGTL 1003 (1431)
Q Consensus 972 i~~--pi--------~~~--~~~~~~~L-------------------------------~~lL-----~~~mLRRtK~dV 1003 (1431)
... |+ ... .......| +.++ ..+|+|+++.++
T Consensus 345 ~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v 424 (956)
T PRK04914 345 QQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAV 424 (956)
T ss_pred HHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhh
Confidence 331 11 000 01111111 1111 257889999887
Q ss_pred cCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHccCcccccccCchh
Q 000549 1004 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1083 (1431)
Q Consensus 1004 ~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~~LlrLRq~c~HP~Lv~~~~~~s 1083 (1431)
. .+|++..+.+.++++++.+..+... . ...+++ +.+|..+.
T Consensus 425 ~------~fp~R~~~~~~l~~~~~y~~~~~~~---~-----------------------~~~~~~-~l~pe~~~------ 465 (956)
T PRK04914 425 K------GFPKRELHPIPLPLPEQYQTAIKVS---L-----------------------EARARD-MLYPEQIY------ 465 (956)
T ss_pred c------CCCcCceeEeecCCCHHHHHHHHHh---H-----------------------HHHHHh-hcCHHHHH------
Confidence 5 5899999999999987644433210 0 001111 12221000
Q ss_pred hhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccch
Q 000549 1084 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1163 (1431)
Q Consensus 1084 ~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~ 1163 (1431)
..++.
T Consensus 466 ---------------------~~~~~------------------------------------------------------ 470 (956)
T PRK04914 466 ---------------------QEFED------------------------------------------------------ 470 (956)
T ss_pred ---------------------HHHhh------------------------------------------------------
Confidence 00000
Q ss_pred hhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCC
Q 000549 1164 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 1243 (1431)
Q Consensus 1164 ~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 1243 (1431)
....+..++|++.++++|+.+
T Consensus 471 ---------------------------------~~~~~~~d~Ki~~L~~~L~~~-------------------------- 491 (956)
T PRK04914 471 ---------------------------------NATWWNFDPRVEWLIDFLKSH-------------------------- 491 (956)
T ss_pred ---------------------------------hhhccccCHHHHHHHHHHHhc--------------------------
Confidence 000111357999999888762
Q ss_pred CCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHH-HhCCCcEEecCCCCCHHHHHHHHHHH
Q 000549 1244 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDF 1322 (1431)
Q Consensus 1244 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~F 1322 (1431)
.++|+|||+++..+++.|+..| ...|++++.|+|+|+..+|+++++.|
T Consensus 492 -------------------------------~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 492 -------------------------------RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred -------------------------------CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 3689999999999999999999 56799999999999999999999999
Q ss_pred hcC-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000549 1323 NTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1401 (1431)
Q Consensus 1323 n~d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~ 1401 (1431)
++. ++++||| ++.+||+||||+.|++||+||+||||..++|||||+||+||+++|.||+++.++|+|++|+++..+|.
T Consensus 541 ~~~~~~~~VLI-sTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 541 ADEEDGAQVLL-CSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hcCCCCccEEE-echhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 985 3688887 55999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhC
Q 000549 1402 EMVASAFG 1409 (1431)
Q Consensus 1402 ~l~~~~lg 1409 (1431)
.+++..++
T Consensus 620 ~ife~~~~ 627 (956)
T PRK04914 620 NAFEHTCP 627 (956)
T ss_pred CceeccCC
Confidence 66655543
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-50 Score=503.50 Aligned_cols=258 Identities=33% Similarity=0.573 Sum_probs=201.6
Q ss_pred CCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC--CcccccCCCEEEEechhhhccCCCCCCCCchhHHH
Q 000549 774 PAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK--DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEE 851 (1431)
Q Consensus 774 p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k--~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~ 851 (1431)
..|+||||||.+++.||-+||.+|+.. .++|+.|.|..... .+.++.+||||+|||++++.|+....
T Consensus 419 ~tgaTLII~P~aIl~QW~~EI~kH~~~--~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte--------- 487 (1394)
T KOG0298|consen 419 ETGATLIICPNAILMQWFEEIHKHISS--LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTE--------- 487 (1394)
T ss_pred ecCceEEECcHHHHHHHHHHHHHhccc--cceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhccc---------
Confidence 358999999999999999999999873 47999999987543 45889999999999999998874320
Q ss_pred HhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcc
Q 000549 852 KMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLR 931 (1431)
Q Consensus 852 k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ 931 (1431)
+ .+..|.-+.+++.+ ...+||..+.||||||||||++....|..++++..|.
T Consensus 488 ------~----------------~~~~R~lR~qsr~~------~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 488 ------D----------------FGSDRQLRHQSRYM------RPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLH 539 (1394)
T ss_pred ------c----------------cCChhhhhcccCCC------CCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhh
Confidence 0 00111111111111 2468999999999999999999999999999999999
Q ss_pred cCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHhccCCCCCchhhHHHHHHHHhhhhhhhccccccCCCCccC
Q 000549 932 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIIN 1011 (1431)
Q Consensus 932 ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i~~pi~~~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~ 1011 (1431)
+.+|||+||||||+ ++||+++|.||+..||....+|...+..++... .....+.++++..+.|+.|-+|... +.
T Consensus 540 ~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~R~~k~~v~~e---l~ 613 (1394)
T KOG0298|consen 540 AINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLWRTFKSKVEHE---LG 613 (1394)
T ss_pred hhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhhhhhhHHHHHH---hC
Confidence 99999999999999 999999999999999999999999887766554 4455788999999999999988763 67
Q ss_pred CCCcEEEEEEecCCHHHHHHHHHHH----HHHHHHHHHHHH---------ccccchhHHHHHHHHHHHHHHccCcccc
Q 000549 1012 LPPKVIMLKQVDFTDEERDFYSQLE----INSRDQFKEYAA---------AGTVKQNYVNILLMLLRLRQACDHPLLV 1076 (1431)
Q Consensus 1012 LPpk~e~vv~v~lS~eEre~Y~~L~----~~sr~~~~~~~~---------~g~~~~~~~~IL~~LlrLRq~c~HP~Lv 1076 (1431)
+||..+.+....+++.+-.+|+... .+.+..+..... ++........++..++||||+|+||...
T Consensus 614 ~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 614 LPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred CCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHHHhhcccccc
Confidence 9999888888888887777775543 223322222221 1112234567889999999999999753
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1e-42 Score=401.79 Aligned_cols=291 Identities=40% Similarity=0.653 Sum_probs=224.2
Q ss_pred HHHHHHHHHHHhh------ccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000549 668 HQRIALSWMVQKE------TSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 741 (1431)
Q Consensus 668 hQk~al~wMl~rE------~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 741 (1431)
||++||.||+.++ ......+|||||||||+|||+++|+++......
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~---------------------------- 52 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNE---------------------------- 52 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHC----------------------------
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhc----------------------------
Confidence 8999999999998 111244899999999999999999999743210
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCC--CCCCcc
Q 000549 742 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSS--RTKDPC 819 (1431)
Q Consensus 742 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~--r~k~~~ 819 (1431)
......+++|||||++++.||..|+.+|+. +..+++++|+|.. +.....
T Consensus 53 ----------------------------~~~~~~~~~LIv~P~~l~~~W~~E~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 53 ----------------------------FPQRGEKKTLIVVPSSLLSQWKEEIEKWFD-PDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp ----------------------------CTTSS-S-EEEEE-TTTHHHHHHHHHHHSG-T-TS-EEEESSSCHHHHTTSS
T ss_pred ----------------------------cccccccceeEeeccchhhhhhhhhccccc-ccccccccccccccccccccc
Confidence 000112359999999999999999999985 3368999999987 334455
Q ss_pred cccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCC
Q 000549 820 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 899 (1431)
Q Consensus 820 ~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~p 899 (1431)
....++++|+||+.+..... ......
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~------------------------------------------------------~~~~~~ 129 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARK------------------------------------------------------KKDKED 129 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TS------------------------------------------------------THTTHH
T ss_pred ccccceeeeccccccccccc------------------------------------------------------cccccc
Confidence 67899999999999971100 000123
Q ss_pred ccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHhccCCCCC
Q 000549 900 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 979 (1431)
Q Consensus 900 L~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i~~pi~~~ 979 (1431)
+..++|++||+||||.+||..+..++++..|++.+||+|||||++|++.|||++++||.++.+.+...|...+..+....
T Consensus 130 l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~ 209 (299)
T PF00176_consen 130 LKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKEN 209 (299)
T ss_dssp HHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTH
T ss_pred cccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhcccc
Confidence 56678999999999999999999999999999999999999999999999999999999999999999998886653344
Q ss_pred chhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHH
Q 000549 980 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1059 (1431)
Q Consensus 980 ~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g~~~~~~~~I 1059 (1431)
......+|+.+++.+++||++.++.. .||+..+.++.++|+++|+++|+.+....+..++... +........+
T Consensus 210 ~~~~~~~L~~~l~~~~~r~~~~d~~~-----~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~ 282 (299)
T PF00176_consen 210 SYENIERLRELLSEFMIRRTKKDVEK-----ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSL 282 (299)
T ss_dssp HHHHHHHHHHHHCCCEECHCGGGGCT-----TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHH
T ss_pred ccccccccccccchhhhhhhcccccc-----cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHH
Confidence 45667899999999999999999843 7999999999999999999999988766554333222 2344677889
Q ss_pred HHHHHHHHHHccCcccc
Q 000549 1060 LLMLLRLRQACDHPLLV 1076 (1431)
Q Consensus 1060 L~~LlrLRq~c~HP~Lv 1076 (1431)
+..+++|||+|+||.|+
T Consensus 283 ~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 283 LQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHHHHHH-THHC
T ss_pred HHHHHHHHHHhCCcccC
Confidence 99999999999999874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-34 Score=359.06 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=102.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.++|+|||++++..++.+.+.|. . ..++|.|+..+|.+++++|+..+.+.|||+| ++|++|+||+.|++||+++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~---~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s 568 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG---K--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 568 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC---C--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeC
Confidence 67899999999999888888773 3 3489999999999999999976788999977 9999999999999999999
Q ss_pred CCC-CcChHHHHHHhhhccCCCCc-----EEEEEEEeCCCHHHHHHH
Q 000549 1355 LWW-NPTTEDQAIDRAHRIGQTRP-----VSVLRLTVKNTVEDRILA 1395 (1431)
Q Consensus 1355 p~W-NP~~e~QAIGRvhRIGQtr~-----V~VyrLi~kdTIEErIle 1395 (1431)
+++ ++..+.||+||+.|.+..+. .++|.|++++|.|+..-.
T Consensus 569 ~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 569 SHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 987 99999999999999987653 799999999999987754
No 22
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=379.88 Aligned_cols=398 Identities=26% Similarity=0.392 Sum_probs=289.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 742 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 742 (1431)
..|.+||.+|++|+......+ --+|||||||||||+++|+++......
T Consensus 294 g~L~~~qleGln~L~~~ws~~---~~~ilADEmgLgktVqsi~fl~sl~~~----------------------------- 341 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPG---VDAILADEMGLGKTVQSIVFLYSLPKE----------------------------- 341 (696)
T ss_pred ccccccchhhhhhhhcccccC---CCcccchhhcCCceeeEEEEEeecccc-----------------------------
Confidence 468999999999999876644 348999999999999998887443211
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccccc
Q 000549 743 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELA 822 (1431)
Q Consensus 743 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~ 822 (1431)
....+|.||++|.+.+.+|..|+..|.+ .+.+..|+|....+......
T Consensus 342 -----------------------------~~~~~P~Lv~ap~sT~~nwe~e~~~wap---~~~vv~~~G~~k~r~iirep 389 (696)
T KOG0383|consen 342 -----------------------------IHSPGPPLVVAPLSTIVNWEREFELWAP---SFYVVPYPGTAKSRAIIREP 389 (696)
T ss_pred -----------------------------cCCCCCceeeccCccccCCCCchhccCC---CcccccCCCCccchhhhhcc
Confidence 1123578999999999999999999977 68888899976543211000
Q ss_pred ----CCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccC
Q 000549 823 ----KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAG 898 (1431)
Q Consensus 823 ----~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~ 898 (1431)
.-+-+.+.-.+..+ +.....+... .-.+ -.+.+....
T Consensus 390 e~s~ed~~~~~~~~i~~~-----------------------------------~~~s~~k~~v--l~~s--~~~~~~~~~ 430 (696)
T KOG0383|consen 390 EFSFEDSSIKSSPKISEM-----------------------------------KTESSAKFHV--LLPS--YETIEIDQS 430 (696)
T ss_pred cccccccccccCCccccc-----------------------------------cchhhccccc--CCCc--hhhcccCHH
Confidence 00000000000000 0000000000 0000 001122344
Q ss_pred CccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHhccCCCC
Q 000549 899 PLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISK 978 (1431)
Q Consensus 899 pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i~~pi~~ 978 (1431)
.+..+.|..+|+||+|++||..+...+.+......++++|||||.+|++.+|+++|+||.++.|.+..+|.+.|.. .
T Consensus 431 il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d---~ 507 (696)
T KOG0383|consen 431 ILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHD---I 507 (696)
T ss_pred HHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcch---h
Confidence 5889999999999999999999999999998999999999999999999999999999999999999999887653 2
Q ss_pred CchhhHHHHHHHHhhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Q 000549 979 NPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVN 1058 (1431)
Q Consensus 979 ~~~~~~~~L~~lL~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g~~~~~~~~ 1058 (1431)
.....++.++.++.+.|+||.|.++++ ..|++++-++.+.|++-|++.|+.++...-..+.. | .+...
T Consensus 508 ~~~~~~~~l~~l~~p~~lrr~k~d~l~-----~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~----~---~~~~s 575 (696)
T KOG0383|consen 508 SCEEQIKKLHLLLCPHMLRRLKLDVLK-----PMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA----G---VHQYS 575 (696)
T ss_pred hHHHHHHhhccccCchhhhhhhhhhcc-----CCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh----c---chhHH
Confidence 234567899999999999999999998 69999999999999999999999887554333222 2 23344
Q ss_pred HHHHHHHHHHHccCcccccccCchhhhhhHHHHHhhchHHHHHHHHHHhhhhccccccCCCCCccchhcccCcccchhhh
Q 000549 1059 ILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCI 1138 (1431)
Q Consensus 1059 IL~~LlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~le~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci 1138 (1431)
++..++.||++|+||++....... .. ...++.+.+
T Consensus 576 ~~n~~mel~K~~~hpy~~~~~e~~------------~~--~~~~~~~~l------------------------------- 610 (696)
T KOG0383|consen 576 LLNIVMELRKQCNHPYLSPLEEPL------------EE--NGEYLGSAL------------------------------- 610 (696)
T ss_pred HHHHHHHHHHhhcCcccCcccccc------------cc--chHHHHHHH-------------------------------
Confidence 677889999999999887431100 00 000000000
Q ss_pred hhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccccHHHHHHHHHHHhhc
Q 000549 1139 CERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLA 1218 (1431)
Q Consensus 1139 ~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ssKi~allelL~~l~ 1218 (1431)
...+.|+..|...+++
T Consensus 611 --------------------------------------------------------------~k~~~k~~~l~~~~~~-- 626 (696)
T KOG0383|consen 611 --------------------------------------------------------------IKASGKLTLLLKMLKK-- 626 (696)
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHHHH--
Confidence 0013344444444443
Q ss_pred CCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEcccHHHHHHHHHHHHh
Q 000549 1219 KPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD 1298 (1431)
Q Consensus 1219 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFSq~t~~LdlLe~~L~~ 1298 (1431)
++..++||+||+|++.+||+|+.++..
T Consensus 627 -----------------------------------------------------l~~~ghrvl~~~q~~~~ldlled~~~~ 653 (696)
T KOG0383|consen 627 -----------------------------------------------------LKSSGHRVLIFSQMIHMLDLLEDYLTY 653 (696)
T ss_pred -----------------------------------------------------HHhcchhhHHHHHHHHHHHHhHHHHhc
Confidence 234789999999999999999999999
Q ss_pred CCCcEEecCCCCCHHHHHHHHHHHhc-CCCccEEEeeccccccc
Q 000549 1299 SSIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLG 1341 (1431)
Q Consensus 1299 ~gI~~~rldGsms~~qR~~aI~~Fn~-d~~v~VLL~StkAGg~G 1341 (1431)
.+ .|.|+||..+...|+++|++||. +..-+++|+||+|||+|
T Consensus 654 ~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 654 EG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99 99999999999999999999996 45688999999999988
No 23
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=2.4e-29 Score=327.96 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=112.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCC--------CCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT--------MSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1346 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGs--------ms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1346 (1431)
.+.|+|||+++..++++|...|...|+.+.+++|. |+..+|.+++++|++ +.+.||| +|.++++|+|++.
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-g~~~vLv-aT~~~~eGldi~~ 441 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA-GEFNVLV-STSVAEEGLDIPS 441 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcCCCccc
Confidence 57899999999999999999999999999999987 899999999999998 6788887 6689999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 000549 1347 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMV 1404 (1431)
Q Consensus 1347 An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~ 1404 (1431)
+++||+|||+|||....|++||++|.|+ +.||.|+.++|+||.++....+|.+.+
T Consensus 442 ~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 442 VDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 9999999999999999998888888765 779999999999999887776665554
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.1e-23 Score=242.56 Aligned_cols=458 Identities=18% Similarity=0.176 Sum_probs=285.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 742 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 742 (1431)
+.-+.||..-++-.+.+ ..+++-.+|||||+.|+-+|+.....
T Consensus 14 ie~R~YQ~~i~a~al~~--------NtLvvlPTGLGKT~IA~~V~~~~l~~----------------------------- 56 (542)
T COG1111 14 IEPRLYQLNIAAKALFK--------NTLVVLPTGLGKTFIAAMVIANRLRW----------------------------- 56 (542)
T ss_pred ccHHHHHHHHHHHHhhc--------CeEEEecCCccHHHHHHHHHHHHHHh-----------------------------
Confidence 45678999988887754 36899999999999997777643210
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Cccc
Q 000549 743 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCE 820 (1431)
Q Consensus 743 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-~~~~ 820 (1431)
-.+..|+++|+ .|+.|-.+-+.+.+. -+...+..+.|.-+.. ....
T Consensus 57 -------------------------------~~~kvlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~ 104 (542)
T COG1111 57 -------------------------------FGGKVLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREEL 104 (542)
T ss_pred -------------------------------cCCeEEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHH
Confidence 01258999997 489999999988765 3457888999987765 3456
Q ss_pred ccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCCc
Q 000549 821 LAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPL 900 (1431)
Q Consensus 821 L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL 900 (1431)
+.+..|++.|-+++.+++. .+.+
T Consensus 105 w~~~kVfvaTPQvveNDl~---------------------------------------------------------~Gri 127 (542)
T COG1111 105 WAKKKVFVATPQVVENDLK---------------------------------------------------------AGRI 127 (542)
T ss_pred HhhCCEEEeccHHHHhHHh---------------------------------------------------------cCcc
Confidence 7889999999999987642 1223
Q ss_pred cccCccEEEEcCccccCChhh--HHHHHHHhcccC-cEEEEEcccCCCChHHHHhhhhccccCCccchHHHHhHhccCCC
Q 000549 901 AKVGWFRVVLDEAQSIKNHRT--QVARACWGLRAK-RRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPIS 977 (1431)
Q Consensus 901 ~~i~W~rVILDEAH~IKN~~T--~~skal~~L~ak-~RwlLTGTPIqN~l~DLyslL~FL~p~~f~~~~~F~~~i~~pi~ 977 (1431)
.--.+.+||+||||+.-+..+ ..++...+-..+ +.++|||||= ++.+.+...+.=|+.+..
T Consensus 128 d~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~v--------------- 191 (542)
T COG1111 128 DLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKV--------------- 191 (542)
T ss_pred ChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceE---------------
Confidence 334567899999998765433 333333333333 6899999993 334444444444433221
Q ss_pred CCchhhHHHHHHHHhhhhhhhcc-ccccCCCCccCCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHccccchh-
Q 000549 978 KNPVKGYKKLQAVLKTIMLRRTK-GTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQN- 1055 (1431)
Q Consensus 978 ~~~~~~~~~L~~lL~~~mLRRtK-~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~L~~~sr~~~~~~~~~g~~~~~- 1055 (1431)
.+|.-. .||.. .+-.+..+.++|+++++-.++-+.+....+..++.+.+.|-....
T Consensus 192 -----------------evrTE~d~DV~~-----Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~ 249 (542)
T COG1111 192 -----------------EVRTEEDPDVRP-----YVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSS 249 (542)
T ss_pred -----------------EEecCCCccHHH-----hhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccC
Confidence 111111 11111 355567888899999888777777766666777777666643321
Q ss_pred ---HHHHHHHHHHHHHHccCcccccccCchhhhh--hHHHHHhh------chHHH-HHHHHHHhhhhccccccCCCCCcc
Q 000549 1056 ---YVNILLMLLRLRQACDHPLLVKGFDSNSLLR--SSVEMAKK------LPQER-QMYLLNCLEASLAICGICNDPPED 1123 (1431)
Q Consensus 1056 ---~~~IL~~LlrLRq~c~HP~Lv~~~~~~s~~~--~s~e~a~~------l~~e~-~~~ll~~le~~~~~C~iC~d~~e~ 1123 (1431)
...++... ..+.... + .. +...++ .....+.+ +.... ...+.+.|+..
T Consensus 250 ~~~~kdl~~~~-~~~~~~a-~----~~-~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l------------- 309 (542)
T COG1111 250 PVSKKDLLELR-QIRLIMA-K----NE-DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKL------------- 309 (542)
T ss_pred cccHhHHHHHH-HHHHHhc-c----Cc-cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-------------
Confidence 22333322 1221111 1 00 111111 01111111 11100 00011111100
Q ss_pred chhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhhccccccCCCCCCCCCCCCCcccccCCcCCCcccc
Q 000549 1124 AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYN 1203 (1431)
Q Consensus 1124 ~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~~~~~~s~~~~~e~~~~~~~~~~ 1203 (1431)
-.+.-. .. ......+..+.-|.++.... -......+.
T Consensus 310 --------------~e~~~~-~~-----sk~a~~l~~d~~~~~al~~~-----------------------~~~~~~~v~ 346 (542)
T COG1111 310 --------------EEEATK-GG-----SKAAKSLLADPYFKRALRLL-----------------------IRADESGVE 346 (542)
T ss_pred --------------HHHhcc-cc-----hHHHHHHhcChhhHHHHHHH-----------------------HHhccccCC
Confidence 000000 00 00000000011111110000 000112335
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccccccccccCCCccCCCCCCCCCCCCcccccchhhHHHHhhhcccccccCCCeEEEEc
Q 000549 1204 SSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFS 1283 (1431)
Q Consensus 1204 ssKi~allelL~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~~KvIVFS 1283 (1431)
.+|+..+.+++++..+ +..+.++|||+
T Consensus 347 HPKl~~l~eilke~~~-----------------------------------------------------k~~~~RvIVFT 373 (542)
T COG1111 347 HPKLEKLREILKEQLE-----------------------------------------------------KNGDSRVIVFT 373 (542)
T ss_pred CccHHHHHHHHHHHHh-----------------------------------------------------cCCCceEEEEe
Confidence 6888888888887432 12568999999
Q ss_pred ccHHHHHHHHHHHHhCCCcEE-ecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1284 QWTKMLDLLEASLKDSSIQYR-RLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1284 q~t~~LdlLe~~L~~~gI~~~-rldG--------sms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
+|+.+++.|..+|.+.|+... ++-| +|++++..++|++|+. +++.||| +|..|-+||++...+-||+||
T Consensus 374 ~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-Ge~nVLV-aTSVgEEGLDIp~vDlVifYE 451 (542)
T COG1111 374 EYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-GEYNVLV-ATSVGEEGLDIPEVDLVIFYE 451 (542)
T ss_pred hhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-CCceEEE-EcccccccCCCCcccEEEEec
Confidence 999999999999999988774 5544 6999999999999998 8999999 679999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1405 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~ 1405 (1431)
|.=.|-+..||.||.+| ++.=+||.|+++||-|+.-+....+|.+.+.
T Consensus 452 pvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 452 PVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred CCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 99999999999999888 4777889999999999988887777766443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.92 E-value=1.2e-22 Score=248.02 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=107.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.+++||+......+.|...+...|+ ...++|.++..+|.+++++|+.. ++.||+ +.+.+.+|+++..|+.+|++.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g-~~~~lv-~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTG-GIKVLV-TVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcC-CCCEEE-EeeeccceecCCCCcEEEEeC
Confidence 367999999999999999999999988 88999999999999999999994 477777 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhcc-CCCCc--EEEEEEEeCCCHHHHHHHHHHH
Q 000549 1355 LWWNPTTEDQAIDRAHRI-GQTRP--VSVLRLTVKNTVEDRILALQQK 1399 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRI-GQtr~--V~VyrLi~kdTIEErIlelq~k 1399 (1431)
|.=++..+.|++||+.|. ..+.. +.+|-++.+++.+..+.+....
T Consensus 359 ~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 359 PTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 999999999999999994 44444 7778888888888877775553
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=2.2e-22 Score=249.87 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=103.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.++|||+..+.+++.|...|+..|+++..++|.|+.++|.++++.|++ +...|||.|.+..++|+++...++||++.
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~~ 421 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFAH 421 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEec
Confidence 45788999999999999999999999999999999999999999999986 67789998889999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc-EEEEEEEeCCCH
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRP-VSVLRLTVKNTV 1389 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~-V~VyrLi~kdTI 1389 (1431)
|.-+.....|++||++|.|..++ +.||.|+-.-.+
T Consensus 422 p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~~ 457 (501)
T PHA02558 422 PSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLSV 457 (501)
T ss_pred CCcchhhhhhhhhccccCCCCCceEEEEEeeccccc
Confidence 99999999999999999998765 899998865443
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=4.7e-21 Score=220.79 Aligned_cols=112 Identities=24% Similarity=0.270 Sum_probs=95.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
++.|+|||+...-.|...+..|.+ + .|+|.++..+|-+++++|+.++.+.-+++| ++|...++|..|+.+|-+.
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~K---p--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLGK---P--FIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcCC---c--eEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEc
Confidence 789999999987766655544443 3 478999999999999999999999988888 9999999999999999999
Q ss_pred CCC-CcChHHHHHHhhhccCCCC----cEEEEEEEeCCCHHHH
Q 000549 1355 LWW-NPTTEDQAIDRAHRIGQTR----PVSVLRLTVKNTVEDR 1392 (1431)
Q Consensus 1355 p~W-NP~~e~QAIGRvhRIGQtr----~V~VyrLi~kdTIEEr 1392 (1431)
.+. .-..|+||.|||-|--... .+++|-|+.+||.|-.
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 887 6678999999999965322 3899999999998853
No 28
>PTZ00110 helicase; Provisional
Probab=99.81 E-value=6.9e-18 Score=211.44 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=99.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.|+|||++....++.|...|+..|+....++|.++..+|..++++|++ +.++||| +|.+++.|||+..+++||+||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~-G~~~ILV-aTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT-GKSPIMI-ATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc-CCCcEEE-EcchhhcCCCcccCCEEEEeC
Confidence 35799999999999999999999999999999999999999999999998 7788877 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
+++++....||+||+.|.|.+-. ++.|+.++
T Consensus 454 ~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 454 FPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred CCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999998754 35556655
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.81 E-value=1.1e-17 Score=206.27 Aligned_cols=109 Identities=23% Similarity=0.311 Sum_probs=98.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.++|||+.....++.+...|...|+....++|.|+..+|+.+++.|++ +.++||| +|.+++.|||+...++||++|
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~vLV-aTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSVLV-ATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcEEE-EecccccccchhcCCeEEEec
Confidence 34689999999999999999999999999999999999999999999997 8889888 569999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
++.++....||+||+.|.|++- ..+.|+..+
T Consensus 319 ~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 319 LARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred CCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 9999999999999999999764 345556554
No 30
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.79 E-value=2.1e-17 Score=202.35 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=96.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
...++|||+.....++.|...|...|+....++|.|+..+|..++++|++ +.++||| +|.+++.|+|+..+++||++|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~vLV-aTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNVLV-ATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCccCCCCCEEEEEC
Confidence 34689999999999999999999999999999999999999999999997 8899888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEE
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSV 1380 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~V 1380 (1431)
+++++....||+||+.|.|.+-.+.+
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999998765433
No 31
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.78 E-value=1.6e-16 Score=196.38 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=95.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh---CCCcEEecCC--------CCCHHHHHHHHHHHhcCCCccEEEeeccccccccC
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLN 1343 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~---~gI~~~rldG--------sms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLN 1343 (1431)
+..++|||+.++..++.|..+|.. .|++...+-| +|+..+..++|+.|++ |++.||| +|..|-+||+
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~-G~~NvLV-ATSV~EEGLD 489 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD-GEINVLV-ATSVAEEGLD 489 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-CCccEEE-EecchhccCC
Confidence 567999999999999999999983 2444333333 6899999999999999 9999999 5599999999
Q ss_pred ccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 000549 1344 MVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASA 1407 (1431)
Q Consensus 1344 Lq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~l~~~~ 1407 (1431)
...++-||-||..-||-+..||+|| +| ++.=+++-|.. +.-+-.--..+..|+.+....
T Consensus 490 I~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~ 548 (746)
T KOG0354|consen 490 IGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQT 548 (746)
T ss_pred cccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999 55 55545555555 332222223344444444433
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=3.4e-17 Score=202.36 Aligned_cols=105 Identities=22% Similarity=0.270 Sum_probs=96.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.+.|||+......+.+...|+..|+....|+|+|+.++|.+++++|.. +.++||+ +|.+.|.|+|+...++||+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~vLV-aT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQVVV-ATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCCcccceEEEEeC
Confidence 35677999999999999999999999999999999999999999999997 8899988 558999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1381 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~Vy 1381 (1431)
++.++....|++||++|.|+.....++
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999988764443
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.78 E-value=4.9e-17 Score=202.98 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=96.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHh-CCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
.++|||+.....++.|...|.. .|+.+..++|+++..+|..++++|+. +.++||| +|.+++.|||+..+++||+||+
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~ILV-aTdvl~rGiDip~v~~VI~~d~ 445 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPVIV-ATGVLGRGVDLLRVRQVIIFDM 445 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCEEE-EecHhhccCCcccCCEEEEeCC
Confidence 4799999999999999999975 69999999999999999999999998 8889888 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
+.++....|++||++|.|++- +++.|+..+
T Consensus 446 P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 446 PNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred CCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 999999999999999999754 444456544
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.77 E-value=4.4e-17 Score=198.91 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=98.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
..|+|||+.....++.|...|...|+.+..++|.|+.++|.+++++|++ ++++||| +|.+++.|||+...++||+||+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~vLV-aTdv~~rGiDip~v~~VI~~d~ 332 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDILV-ATDVAARGLHIPAVTHVFNYDL 332 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcEEE-EechhhcCCCccccCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 8899988 5599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1386 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~k 1386 (1431)
++++....|++||+.|.|++-. ++.|+.+
T Consensus 333 P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 333 PDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred CCchhheEeccccccCCCCCee--EEEEeCH
Confidence 9999999999999999997654 4445554
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.77 E-value=5.3e-17 Score=200.00 Aligned_cols=108 Identities=24% Similarity=0.324 Sum_probs=97.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
..++|||+......+.|...|...++....++|.|+..+|.+++++|++ +.++||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~iLV-aTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRVLV-ATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EccHHhcCCCcccCCEEEEeCC
Confidence 4689999999999999999999999999999999999999999999998 7888888 6689999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
+.++....|++||+.|.|++-.+ +.|+..+
T Consensus 323 P~~~~~yvqR~GRaGR~g~~G~a--i~l~~~~ 352 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAATGEA--LSLVCVD 352 (456)
T ss_pred CCCHHHhhhhccccccCCCCeeE--EEEecHH
Confidence 99999999999999999987643 3344443
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=1.1e-16 Score=201.51 Aligned_cols=108 Identities=17% Similarity=0.324 Sum_probs=98.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.++|||+.....++.|.+.|...++.+..++|.|+..+|.++++.|++ +.++||| +|.+++.|||+...++||+||
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~VLV-aTdv~arGIDip~V~~VInyd 333 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEILV-ATDVAARGLHIDGVKYVYNYD 333 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeEEE-EehhhhcCCCccCCCEEEEcC
Confidence 45789999999999999999999999999999999999999999999997 7888988 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1386 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~k 1386 (1431)
++|++....|++||+.|.|.+-. .+.|+..
T Consensus 334 ~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 334 LPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred CCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 99999999999999999998654 3344544
No 37
>PTZ00424 helicase 45; Provisional
Probab=99.76 E-value=1.3e-16 Score=193.17 Aligned_cols=108 Identities=19% Similarity=0.325 Sum_probs=97.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
..++|||+.....++.+...|...++.+..++|.++.++|..+++.|++ +.++||+ +|.+++.|+|+...++||++|+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~vLv-aT~~l~~GiDip~v~~VI~~~~ 344 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRVLI-TTDLLARGIDVQQVSLVINYDL 344 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-EcccccCCcCcccCCEEEEECC
Confidence 3588999999999999999999999999999999999999999999997 7889888 6689999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
+.++....|++||++|.|..- .++.|+.++
T Consensus 345 p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGRKG--VAINFVTPD 374 (401)
T ss_pred CCCHHHEeecccccccCCCCc--eEEEEEcHH
Confidence 999999999999999998653 455566554
No 38
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.75 E-value=2.1e-16 Score=195.73 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=98.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
...|+|||++....++.|...|...|+.+..++|.++..+|.++++.|++ ++++||| +|.+++.|||+...++||+++
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~-G~~~vLv-aT~~l~~GIDi~~v~~VI~~~ 411 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE-GKIRVLV-ATDVAGRGIHIDGISHVINFT 411 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC-CCCcEEE-EccccccCCcccCCCEEEEeC
Confidence 34689999999999999999999999999999999999999999999998 7888888 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
+++++....|++||++|.|+.-. ++.|+.++
T Consensus 412 ~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 412 LPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred CCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 99999999999999999998653 34445443
No 39
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.74 E-value=5.9e-16 Score=196.22 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=94.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
..++|||+......+.|...|...|+....++|.|+..+|++++++|+. +.+.||| +|.+++.|||+...++||+||+
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~ILV-ATdv~arGIDip~V~~VI~~d~ 322 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLDILI-ATDVAARGLDVERISLVVNYDI 322 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCCEEE-EcchHhcCCCcccCCEEEEeCC
Confidence 3689999999999999999999999999999999999999999999998 7888887 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCc
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
+.++....|++||+.|.|.+-.
T Consensus 323 P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 323 PMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred CCCHHHHHHHhccccCCCCcce
Confidence 9999999999999999997654
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.74 E-value=3e-16 Score=199.23 Aligned_cols=101 Identities=18% Similarity=0.229 Sum_probs=94.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.++|||+......+.+...|+..|+.+..++|+|+.++|.+++++|.. +.++||| +|.+.|.|+|+...+.||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-g~~~VLV-aT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-DDLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC-CCCCEEE-EechhhccCCCCCcCEEEEeC
Confidence 45789999999999999999999999999999999999999999999997 7888888 558999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
++.+.....|++||++|.|....
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999997655
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.74 E-value=3e-16 Score=199.25 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=94.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
+.+.|||+......+.+...|...|+++..++|+|+.++|..++++|.. +.++||+ +|.+.|.|+|+...+.||++++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-g~~~vlV-aT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-DDVKVMV-ATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EechhhccCcCCCCCEEEEcCC
Confidence 4688999999999999999999999999999999999999999999998 6788888 5689999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEE
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVS 1379 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~ 1379 (1431)
+++.....|++||++|.|+.....
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999766543
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.71 E-value=1.8e-15 Score=193.00 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC-CcChHHHHHHhhhccCCCCc
Q 000549 1299 SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1299 ~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W-NP~~e~QAIGRvhRIGQtr~ 1377 (1431)
.++.+..++|.|+.++|.+++++|++ ++++||| +|.+.+.|+|+..++.||+++++. .-+...|++||++|-|++-.
T Consensus 481 ~~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 481 PKYNVGLLHGRMKSDEKEAVMEEFRE-GEVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 36788999999999999999999998 7888888 568999999999999999999874 67788999999999987654
Q ss_pred E
Q 000549 1378 V 1378 (1431)
Q Consensus 1378 V 1378 (1431)
+
T Consensus 559 ~ 559 (630)
T TIGR00643 559 C 559 (630)
T ss_pred E
Confidence 3
No 43
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.70 E-value=1.6e-15 Score=200.89 Aligned_cols=105 Identities=14% Similarity=0.351 Sum_probs=84.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC------CC---cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS------SI---QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1346 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~------gI---~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1346 (1431)
+.|.|||+....+++.+.+.|.+. ++ .+..++|+++ ++.+++++|.++ ....+++|.+..++|++...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~-~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE-RLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC-CCCeEEEEecccccCCCccc
Confidence 379999999999999888887653 22 3457899975 678899999884 44345558899999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCC---CCcEEEEEE
Q 000549 1347 ACHVLLLDLWWNPTTEDQAIDRAHRIGQ---TRPVSVLRL 1383 (1431)
Q Consensus 1347 An~VI~lDp~WNP~~e~QAIGRvhRIGQ---tr~V~VyrL 1383 (1431)
...||++.|.-++....|++||+-|+-- |....|+-+
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 9999999999999999999999999854 444555544
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.69 E-value=3.5e-15 Score=194.56 Aligned_cols=107 Identities=13% Similarity=0.167 Sum_probs=92.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1353 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1353 (1431)
+.+++||++....++.+...|++. ++++..++|.|+..+|++++++|.+ ++++||| +|...+.|+++..+++||++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~-Gk~~ILV-aT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK-GEFQVLV-CTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEE-ECChhhcccccccCCEEEEe
Confidence 468999999999999999999874 7899999999999999999999998 7888888 66899999999999999999
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000549 1354 DLW-WNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1386 (1431)
Q Consensus 1354 Dp~-WNP~~e~QAIGRvhRIGQtr~V~VyrLi~k 1386 (1431)
+++ +......|++||++|-|++- ++|.|+..
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 885 45567889999999988654 45555544
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.68 E-value=4.9e-15 Score=197.00 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=89.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1353 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1353 (1431)
+.+++||++....++.+.+.|.+. ++++..++|.|+..+|++++.+|.+ ++++||| +|...+.||++..+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCEEE-ECchhhcccccccCCEEEEe
Confidence 467899999999999999999876 7889999999999999999999998 7899988 66899999999999999988
Q ss_pred cCC-CCcChHHHHHHhhhccCCCCcE
Q 000549 1354 DLW-WNPTTEDQAIDRAHRIGQTRPV 1378 (1431)
Q Consensus 1354 Dp~-WNP~~e~QAIGRvhRIGQtr~V 1378 (1431)
++. |......|++||++|.|++--+
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCceEE
Confidence 764 6777899999999999877533
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.68 E-value=6e-15 Score=189.48 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC-CcChHHHHHHhhhccCCCCcE
Q 000549 1300 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPV 1378 (1431)
Q Consensus 1300 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W-NP~~e~QAIGRvhRIGQtr~V 1378 (1431)
++++..++|.|+..+|++++++|.+ ++++||| +|.+.+.|+|+..++.||+++++. ..+...|++||++|-|.+-
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~-g~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g-- 580 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKA-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQS-- 580 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHc-CCCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCce--
Confidence 4788999999999999999999998 7888888 668999999999999999999874 5678889999999998754
Q ss_pred EEEEEE
Q 000549 1379 SVLRLT 1384 (1431)
Q Consensus 1379 ~VyrLi 1384 (1431)
+++.+.
T Consensus 581 ~~ill~ 586 (681)
T PRK10917 581 YCVLLY 586 (681)
T ss_pred EEEEEE
Confidence 344444
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.66 E-value=9.2e-15 Score=188.25 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=95.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
+.+.|||+......+.|...|...|+....|+|+|+..+|..++++|.. +.++||+ +|.+.|.|||+...+.||+|++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~-Gei~VLV-ATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK-DEINIIC-ATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc-CCCcEEE-EechhhcCCCccCCcEEEEcCC
Confidence 3567999999999999999999999999999999999999999999998 7889988 4589999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEE
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVL 1381 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~Vy 1381 (1431)
+-+.....|++||++|.|+.-.+..+
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999988764443
No 48
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.9e-14 Score=173.69 Aligned_cols=101 Identities=23% Similarity=0.268 Sum_probs=95.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.|+|||++...+.+.|++.|+..+++.+.|||..++.+|+.+++.|++ ++..||| .|..++.||++...++||+||
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre-G~~~vLV-ATdVAaRGLDi~dV~lVInyd 417 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE-GKSPVLV-ATDVAARGLDVPDVDLVINYD 417 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc-CCcceEE-EcccccccCCCccccEEEeCC
Confidence 56799999999999999999999999999999999999999999999998 7888888 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
+|=|.....+|+||..|-|++-.
T Consensus 418 fP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 418 FPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred CCCCHHHHHhhcCccccCCCCce
Confidence 99999999999999999888764
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.60 E-value=1.4e-13 Score=177.77 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=98.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC--------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS--------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA 1347 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~--------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A 1347 (1431)
+.|+|||++.....+.|...|+.. +.++..++|+++.++|.++.++|++ +.++||+ +|.+.+.|||+...
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~vLV-aTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLGVA-TTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceEEE-ECchHhccCCcccc
Confidence 468999999999999999988753 5677889999999999999999998 8888887 77999999999999
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHH
Q 000549 1348 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRIL 1394 (1431)
Q Consensus 1348 n~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIl 1394 (1431)
++||+++.|-+.....||+||++|.|++-- ++.++..+..|..++
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 999999999999999999999999997653 333444455555433
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.57 E-value=4.1e-13 Score=176.76 Aligned_cols=104 Identities=16% Similarity=0.149 Sum_probs=91.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC------CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACH 1349 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~ 1349 (1431)
+.++|||++.....+.+...|... +..+..++|+++.++|..+.++|++ +.++||+ +|.+.+.|+|+...+.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~-G~i~vLV-aTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR-GELKVVV-SSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc-CCCeEEE-ECChHHhcCCCCCCcE
Confidence 468999999999999999998762 4678899999999999999999998 7888888 6689999999999999
Q ss_pred EEEEcCCCCcChHHHHHHhhhcc-CCCCcEEEE
Q 000549 1350 VLLLDLWWNPTTEDQAIDRAHRI-GQTRPVSVL 1381 (1431)
Q Consensus 1350 VI~lDp~WNP~~e~QAIGRvhRI-GQtr~V~Vy 1381 (1431)
||+++++.+.....||+||++|- |+...-.++
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 99999999999999999999975 455544444
No 51
>PRK02362 ski2-like helicase; Provisional
Probab=99.57 E-value=3.1e-13 Score=175.88 Aligned_cols=81 Identities=20% Similarity=0.090 Sum_probs=66.9
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec-----CCCCcChHHHHHHhhhcc
Q 000549 1302 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD-----LWWNPTTEDQAIDRAHRI 1372 (1431)
Q Consensus 1302 ~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~----lD-----p~WNP~~e~QAIGRvhRI 1372 (1431)
.+..++|+++..+|..+.+.|++ +.++||+ +|.+.+.|+||.+...||. || .+.++....|++||++|.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~-G~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRD-RLIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHc-CCCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 46778999999999999999998 8899988 5699999999988877765 66 456778899999999999
Q ss_pred CCCCcEEEEEEE
Q 000549 1373 GQTRPVSVLRLT 1384 (1431)
Q Consensus 1373 GQtr~V~VyrLi 1384 (1431)
|....=.++-+.
T Consensus 383 g~d~~G~~ii~~ 394 (737)
T PRK02362 383 GLDPYGEAVLLA 394 (737)
T ss_pred CCCCCceEEEEe
Confidence 987654444444
No 52
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.54 E-value=9.1e-13 Score=168.88 Aligned_cols=108 Identities=17% Similarity=0.052 Sum_probs=74.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC-----CCcEEecCCCCCHH---------------------HHHHHHHHHhcCCCcc
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS-----SIQYRRLDGTMSVF---------------------ARDKAVKDFNTLPEVS 1329 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~-----gI~~~rldGsms~~---------------------qR~~aI~~Fn~d~~v~ 1329 (1431)
+.|.+||+.....+..+...|.+. +...+.++|+.+.+ ...+++++|.+++.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 356666666666666665555432 23334555543322 3357999998867788
Q ss_pred EEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc-CC-CCcEEEEEEEe
Q 000549 1330 VMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI-GQ-TRPVSVLRLTV 1385 (1431)
Q Consensus 1330 VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRI-GQ-tr~V~VyrLi~ 1385 (1431)
+||+. .-..+|.+....+++++.-|.=.. ...|||||+.|+ +- |....|+-|+-
T Consensus 594 ilIVv-dmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLIVV-DMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEEE-cccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 88755 889999999999999999887655 468999999995 43 33466766653
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=99.53 E-value=1.6e-12 Score=167.84 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=60.5
Q ss_pred EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---------CCcChHHHHHHhhhccC
Q 000549 1303 YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---------WNPTTEDQAIDRAHRIG 1373 (1431)
Q Consensus 1303 ~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~---------WNP~~e~QAIGRvhRIG 1373 (1431)
+..++|+++..+|..+.+.|++ +.++||+ +|.+.+.|+|+.+ .+||+++.. +.+....|++||++|.|
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~-g~i~VLv-aT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRN-RYIKVIV-ATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHc-CCCeEEE-ecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 4567999999999999999997 7889888 5699999999985 688887753 35556789999999999
Q ss_pred CCCc
Q 000549 1374 QTRP 1377 (1431)
Q Consensus 1374 Qtr~ 1377 (1431)
....
T Consensus 365 ~d~~ 368 (674)
T PRK01172 365 YDQY 368 (674)
T ss_pred CCCc
Confidence 7655
No 54
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.51 E-value=7.3e-14 Score=141.16 Aligned_cols=105 Identities=31% Similarity=0.479 Sum_probs=96.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.++|||+.....++.+...|...++++..++|+++..+|..++++|+. +...+++ ++.++++|+|++.+++||+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~ili-~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE-GEIVVLV-ATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc-CCCcEEE-EcChhhcCcChhhCCEEEEeC
Confidence 46799999999999999999999999999999999999999999999998 4555555 779999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1381 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~Vy 1381 (1431)
++|++....|++||++|.||+..|+++
T Consensus 105 ~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 105 LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999998877663
No 55
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=7.1e-12 Score=156.31 Aligned_cols=118 Identities=25% Similarity=0.404 Sum_probs=101.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
.++|||+.-...++.|...|...|+....|+|++++.+|.++++.|++ +..+|||+| ++++.||++...++||+||++
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~vLVaT-DvaaRGiDi~~v~~VinyD~p 351 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRVLVAT-DVAARGLDIPDVSHVINYDLP 351 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCEEEEe-chhhccCCccccceeEEccCC
Confidence 479999999999999999999999999999999999999999999996 899999955 999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 000549 1357 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1399 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~k 1399 (1431)
.++....+||||..|.|.+- ..+.|+.. .-|.+.+...++
T Consensus 352 ~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 352 LDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred CCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHH
Confidence 99999999999999999444 44445554 224444443333
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.49 E-value=4.4e-12 Score=164.78 Aligned_cols=84 Identities=14% Similarity=0.064 Sum_probs=64.3
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-------EcCCCCc-ChHHHHHHhhhccC
Q 000549 1302 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-------LDLWWNP-TTEDQAIDRAHRIG 1373 (1431)
Q Consensus 1302 ~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~-------lDp~WNP-~~e~QAIGRvhRIG 1373 (1431)
.+..++|+++.++|..+.+.|++ +.++||+ +|.+.+.|+|+.+...||. ++.++-| ....|++||++|.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~-G~i~VLv-aT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFRE-GLIKVIT-ATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHC-CCCeEEE-eCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 56779999999999999999997 7899888 6699999999987776663 2222223 35589999999998
Q ss_pred CCCcEEEEEEEeCC
Q 000549 1374 QTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1374 Qtr~V~VyrLi~kd 1387 (1431)
..+.-.++-++..+
T Consensus 375 ~d~~G~~ii~~~~~ 388 (720)
T PRK00254 375 YDEVGEAIIVATTE 388 (720)
T ss_pred cCCCceEEEEecCc
Confidence 76654555455443
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.48 E-value=4.8e-12 Score=151.27 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=89.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCC--cEEecCCCCCHHHHHHH----HHHHhcCCCccEEEeeccccccccCccccC
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKA----VKDFNTLPEVSVMIMSLKAASLGLNMVAAC 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~a----I~~Fn~d~~v~VLL~StkAGg~GLNLq~An 1348 (1431)
.+.++|||++....++.+...|++.+. .+..++|.++..+|.+. ++.|.+ +..+||| +|.+++.|+|+ .++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~ilv-aT~~~~~GiDi-~~~ 297 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKFVIV-ATQVIEASLDI-SAD 297 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCeEEE-ECcchhceecc-CCC
Confidence 457999999999999999999988776 48999999999999764 889987 6777777 77899999999 488
Q ss_pred EEEEEcCCCCcChHHHHHHhhhccCCCC----cEEEEEEEeCC
Q 000549 1349 HVLLLDLWWNPTTEDQAIDRAHRIGQTR----PVSVLRLTVKN 1387 (1431)
Q Consensus 1349 ~VI~lDp~WNP~~e~QAIGRvhRIGQtr----~V~VyrLi~kd 1387 (1431)
.||.++.+ +....|++||++|.|.+. .|+|+.....+
T Consensus 298 ~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 298 VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 88887665 778899999999999764 35555544444
No 58
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.43 E-value=8.3e-12 Score=142.64 Aligned_cols=123 Identities=26% Similarity=0.291 Sum_probs=108.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.-+||||..-.+.+.+.-.|+..|+....++|.|+...|..+++.|+. +...||+ +|+.|+.||+.+.++.||+||
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~iLv-~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSILV-CTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcEEE-ecchhcccCCCCCceEEEecC
Confidence 45789999999999999999999999999999999999999999999998 6777777 679999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH--HHHHHHHHHHH
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE--DRILALQQKKR 1401 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIE--ErIlelq~kK~ 1401 (1431)
.|-+-..++.|+||+.|.| +.-.+..|++.-.|| .||-....+|.
T Consensus 377 iP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred CCCcHHHHHHHcccccccC--CCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999 666777888886655 35555555554
No 59
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.41 E-value=2.3e-11 Score=149.43 Aligned_cols=73 Identities=14% Similarity=0.246 Sum_probs=65.2
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-CCcChHHHHHHhhhccCC
Q 000549 1300 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTEDQAIDRAHRIGQ 1374 (1431)
Q Consensus 1300 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~-WNP~~e~QAIGRvhRIGQ 1374 (1431)
++.+..++|.|+.+++++++.+|++ +++.||| +|.+.-+|+|+..|+.+|+.++. +--+...|--|||+|=+.
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~-~e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKE-GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHc-CCCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 4567889999999999999999998 8899988 67899999999999999999987 577888999999999443
No 60
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=9.8e-12 Score=136.57 Aligned_cols=108 Identities=20% Similarity=0.347 Sum_probs=99.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
...||||+-....|+|.+.|+...+.+..++|.|+.++|++++++|+. +..+||| +++.-+.|++.|..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs-g~SrvLi-tTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS-GKSRVLI-TTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc-CCceEEE-EechhhccCCcceeEEEEecCCC
Confidence 467999999999999999999999999999999999999999999998 7888988 77999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000549 1357 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1388 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdT 1388 (1431)
-|+.....||||.+|.|.+- .+.+|+..+.
T Consensus 345 ~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred ccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 99999999999999999875 4456666553
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=7.6e-11 Score=150.69 Aligned_cols=113 Identities=13% Similarity=0.124 Sum_probs=93.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCc---cccC---
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNM---VAAC--- 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNL---q~An--- 1348 (1431)
.+.++|||+......+.|...|.+.|+++..++|.+...+|..+..+|+. ..|+| +|..+|.|+++ ....
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g~VlI-ATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---GAVTV-ATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---CeEEE-EccchhcCcCCCccccccccc
Confidence 56899999999999999999999999999999999988777777666654 25666 77999999999 4666
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1349 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1349 --~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
+||.+|++-|+..+.|++||+.|.|++-.... |+ |.|+.++.+
T Consensus 503 GL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 503 GLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred CcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 99999999999999999999999998864322 22 446665543
No 62
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.40 E-value=1.9e-11 Score=154.77 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=83.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1345 (1431)
.+.++|||+......+.|...|.+.|+++..++|.+...+|..+..+|+. ..|+| +|..+|.|+++.
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~---g~VlI-ATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK---GAVTV-ATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC---CeEEE-EccccccccCCCCCccccccC
Confidence 56899999999999999999999999999999999988777666665554 25665 779999999998
Q ss_pred ccCEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000549 1346 AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1346 ~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
..++|+.++++-+ ..+.|++||+.|.|..-.
T Consensus 499 GL~vIit~~~ps~-rid~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 499 GLAVIGTERMENS-RVDLQLRGRSGRQGDPGS 529 (762)
T ss_pred CeEEEEecCCCCc-HHHHHhhhcccCCCCcee
Confidence 7788899999855 466999999999998765
No 63
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.39 E-value=8.1e-13 Score=141.37 Aligned_cols=167 Identities=23% Similarity=0.291 Sum_probs=103.9
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 742 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 742 (1431)
.+|++||.+++.-+++........+.++|...+|.|||+++++++....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~------------------------------- 50 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA------------------------------- 50 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------------
Confidence 4699999999998887544321126689999999999999998886521
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeC--CC------
Q 000549 743 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHG--SS------ 813 (1431)
Q Consensus 743 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G--~~------ 813 (1431)
.++|||||. +|+.||.+++..+... ...+....- ..
T Consensus 51 ---------------------------------~~~l~~~p~~~l~~Q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 95 (184)
T PF04851_consen 51 ---------------------------------RKVLIVAPNISLLEQWYDEFDDFGSE--KYNFFEKSIKPAYDSKEFI 95 (184)
T ss_dssp ---------------------------------CEEEEEESSHHHHHHHHHHHHHHSTT--SEEEEE--GGGCCE-SEEE
T ss_pred ---------------------------------cceeEecCHHHHHHHHHHHHHHhhhh--hhhhccccccccccccccc
Confidence 148999998 6889999999766542 111111100 00
Q ss_pred -CCC-----CcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCC
Q 000549 814 -RTK-----DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 887 (1431)
Q Consensus 814 -r~k-----~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~ 887 (1431)
... ........++++++|+.+....... .... +. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~-----------~~~~--~~-------------------------~~ 137 (184)
T PF04851_consen 96 SIQDDISDKSESDNNDKDIILTTYQSLQSDIKEE-----------KKID--ES-------------------------AR 137 (184)
T ss_dssp TTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH-----------------------------------------------
T ss_pred ccccccccccccccccccchhhHHHHHHhhcccc-----------cccc--cc-------------------------hh
Confidence 000 1122457889999999997532100 0000 00 00
Q ss_pred CCCcccccccCCccccCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccC
Q 000549 888 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPI 943 (1431)
Q Consensus 888 ~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPI 943 (1431)
....+....+++||+||||++.+... ++.+....+.+++.|||||.
T Consensus 138 --------~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 138 --------RSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp --------GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred --------hhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 00113445678999999999965432 66666688999999999995
No 64
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.39 E-value=4.2e-13 Score=124.70 Aligned_cols=78 Identities=33% Similarity=0.515 Sum_probs=72.8
Q ss_pred HHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccC
Q 000549 1294 ASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1373 (1431)
Q Consensus 1294 ~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIG 1373 (1431)
..|+..|+.+..++|.++..+|+.+++.|+. +...||+ ++.++++|+||+.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~-~~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNS-GEIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHT-TSSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhc-cCceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3688999999999999999999999999998 5667777 5599999999999999999999999999999999999998
No 65
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=1.5e-10 Score=145.32 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=90.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq---~An--- 1348 (1431)
.+..+|||+......+.|...|.+.|+++..|+|.+. +|++.+..|.. ....|+| +|..+|.|+++. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag-~~g~VlV-ATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAG-QRGRITV-ATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcC-CCCcEEE-EccchhcccCcCCccchhhcC
Confidence 3567999999999999999999999999999999864 66777777765 3345665 779999999987 333
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1349 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1349 --~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
+||.+|.+=|...+.|++||+.|.|..-.+ ..|+ |.|+.++.+
T Consensus 548 GLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~ 592 (656)
T PRK12898 548 GLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQS 592 (656)
T ss_pred CCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHh
Confidence 999999999999999999999999976442 2223 446665544
No 66
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.37 E-value=2.4e-10 Score=146.27 Aligned_cols=103 Identities=23% Similarity=0.328 Sum_probs=85.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHH-----HHHHHHhc----CC------CccEEEeeccccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-----KAVKDFNT----LP------EVSVMIMSLKAAS 1339 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-----~aI~~Fn~----d~------~v~VLL~StkAGg 1339 (1431)
.+.++|||++....++.|...|+..++ ..++|.|+..+|. +++++|+. .. +. .+|++|.+++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~-~ILVATdVae 347 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT-VYLVCTSAGE 347 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc-eEEeccchhh
Confidence 356899999999999999999999887 8999999999999 88999986 11 24 4556889999
Q ss_pred cccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc--EEEEEE
Q 000549 1340 LGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP--VSVLRL 1383 (1431)
Q Consensus 1340 ~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~--V~VyrL 1383 (1431)
.||++.. ++||+...++ ....||+||++|.|.... ++|+.+
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999975 8999876654 688999999999998654 454433
No 67
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.34 E-value=7.7e-12 Score=134.01 Aligned_cols=167 Identities=27% Similarity=0.272 Sum_probs=111.1
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 742 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 742 (1431)
.++++||..++.+++... +..++...+|.|||.+++.++......
T Consensus 7 ~~~~~~Q~~~~~~~~~~~------~~~~i~~~~GsGKT~~~~~~~~~~~~~----------------------------- 51 (201)
T smart00487 7 EPLRPYQKEAIEALLSGL------RDVILAAPTGSGKTLAALLPALEALKR----------------------------- 51 (201)
T ss_pred CCCCHHHHHHHHHHHcCC------CcEEEECCCCCchhHHHHHHHHHHhcc-----------------------------
Confidence 458999999999998421 468999999999999887776543210
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeC-hhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 000549 743 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCP-TSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 821 (1431)
Q Consensus 743 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP-~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L 821 (1431)
.+.+++|||+| ..+..||..++.+.+..........+++.........+
T Consensus 52 ------------------------------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (201)
T smart00487 52 ------------------------------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL 101 (201)
T ss_pred ------------------------------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH
Confidence 01245899999 56889999999988763322556666665432222222
Q ss_pred c--CCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCC
Q 000549 822 A--KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 899 (1431)
Q Consensus 822 ~--~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~p 899 (1431)
. .++++++|++.+...+.. ..
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~---------------------------------------------------------~~ 124 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLEN---------------------------------------------------------DL 124 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHc---------------------------------------------------------CC
Confidence 2 239999999988643210 00
Q ss_pred ccccCccEEEEcCccccCC-hh-hHHHHHHHhc-ccCcEEEEEcccCCCChHHHH
Q 000549 900 LAKVGWFRVVLDEAQSIKN-HR-TQVARACWGL-RAKRRWCLSGTPIQNAIDDLY 951 (1431)
Q Consensus 900 L~~i~W~rVILDEAH~IKN-~~-T~~skal~~L-~ak~RwlLTGTPIqN~l~DLy 951 (1431)
+....|.++|+||||.+.+ .. ......+..+ ...+++++||||..+.....+
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~ 179 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLE 179 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchhHHHHHH
Confidence 2234577899999999985 33 3333334444 578899999999744433333
No 68
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.33 E-value=9.5e-11 Score=145.50 Aligned_cols=107 Identities=12% Similarity=0.211 Sum_probs=84.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC----CCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS----SIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1350 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~----gI~-~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1350 (1431)
-.|.|||+....+++.|...|..+ +.. ...|+|.. ++-++.|++|-.......+.+|.+-.-.|++...+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 469999999999999999999875 223 45778874 45667889998744444444477999999999999999
Q ss_pred EEEcCCCCcChHHHHHHhhhcc-------CCCCc-EEEEEEE
Q 000549 1351 LLLDLWWNPTTEDQAIDRAHRI-------GQTRP-VSVLRLT 1384 (1431)
Q Consensus 1351 I~lDp~WNP~~e~QAIGRvhRI-------GQtr~-V~VyrLi 1384 (1431)
+|+-+.-+-....|.+||.-|+ ||.|. .+|+-++
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999999997 45555 5555553
No 69
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.32 E-value=2.1e-10 Score=147.49 Aligned_cols=94 Identities=20% Similarity=0.233 Sum_probs=74.3
Q ss_pred HHHHHHHHHhC--CCcEEecCCCCC--HHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---CCc--
Q 000549 1289 LDLLEASLKDS--SIQYRRLDGTMS--VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNP-- 1359 (1431)
Q Consensus 1289 LdlLe~~L~~~--gI~~~rldGsms--~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~---WNP-- 1359 (1431)
.+.+++.|++. ++++.++|+.+. ..+|++++++|.+ +++.||| .|...+.|+++.....|+++|.+ ..|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR-GEADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc-CCCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 45566666664 788899999986 4679999999998 7889998 55788999999999999888765 333
Q ss_pred -------ChHHHHHHhhhccCCCCcEEEEEEE
Q 000549 1360 -------TTEDQAIDRAHRIGQTRPVSVLRLT 1384 (1431)
Q Consensus 1360 -------~~e~QAIGRvhRIGQtr~V~VyrLi 1384 (1431)
....|+.||+.|.|....|.+..+-
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 4678999999998877776665443
No 70
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.31 E-value=1.3e-10 Score=136.40 Aligned_cols=108 Identities=20% Similarity=0.235 Sum_probs=93.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1350 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1350 (1431)
...++|+|+........+...|+ ...+.+-.+.|..+.+.|.+.+++|+. ++++|||.| ++.+.|+++-..+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~-g~i~vLIcS-D~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK-GDINVLICS-DALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhc-CCceEEEeh-hhhhcCCcccccceE
Confidence 45799999999988887777776 346677789999999999999999999 899999976 999999999999999
Q ss_pred EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000549 1351 LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1386 (1431)
Q Consensus 1351 I~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~k 1386 (1431)
|+||||-.-.....|+||..|-||.- +++.|+..
T Consensus 506 INYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 506 INYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred eecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999999999999976 34444443
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.30 E-value=1.2e-11 Score=155.71 Aligned_cols=101 Identities=18% Similarity=0.173 Sum_probs=91.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc-------c
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------A 1347 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~-------A 1347 (1431)
.+..+|||+......+.|...|.+.|+++..++|. ..+|++.+.+|.. ....|+| +|..+|.|+++.. .
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag-~~g~VtI-ATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG-RKGAVTI-ATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC-CCceEEE-EeccccCCcCCCccchhhcCC
Confidence 67899999999999999999999999999999999 7899999999987 5667777 5699999999887 6
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEE
Q 000549 1348 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVS 1379 (1431)
Q Consensus 1348 n~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~ 1379 (1431)
-+||.++++-++..+.|++||+.|.|..-...
T Consensus 480 l~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred cEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 79999999999999999999999999886533
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.29 E-value=1.9e-09 Score=137.24 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=88.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1353 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1353 (1431)
+.++|||..-...++.+.+.|++. ++.+..++|.++. +++++++|...+..+||| +|..++.||++....+||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kILV-ATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSIII-STPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEEe-ccChhhccccccCeeEEEEC
Confidence 457999999999999999999887 7999999999985 467888885446777777 77999999999999999999
Q ss_pred cCCC------------CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q 000549 1354 DLWW------------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1391 (1431)
Q Consensus 1354 Dp~W------------NP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEE 1391 (1431)
+... +.+...||.||++|. ++=.+++|+.++....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7322 444556777777775 5678899998876543
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.28 E-value=5.2e-10 Score=133.98 Aligned_cols=85 Identities=13% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCC--CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSS--IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~g--I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
.+.|+|||+.....++.+...|+..+ +.+..++|.++..+|.++. ...||| +|.+++.||++.. ..||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLV-aTdv~~rGiDi~~-~~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFDILL-GTSTVDVGVDFKR-DWLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCCEEE-EecHHhcccCCCC-ceEE-
Confidence 46799999999999999999999865 5788999999999987653 455665 7799999999975 4666
Q ss_pred EcCCCCcChHHHHHHhhh
Q 000549 1353 LDLWWNPTTEDQAIDRAH 1370 (1431)
Q Consensus 1353 lDp~WNP~~e~QAIGRvh 1370 (1431)
++| -++....||+||++
T Consensus 341 ~~p-~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FSA-RDAAAFWQRLGRLG 357 (357)
T ss_pred ECC-CCHHHHhhhcccCC
Confidence 564 46778888888863
No 74
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.27 E-value=2.4e-10 Score=134.71 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=97.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
...+|||.+....+|.|+..|.+.|+++++|+|+-+++||+.++..|++ +...||| .|.++|.||+....++||+||.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~-~t~dIlV-aTDvAgRGIDIpnVSlVinydm 594 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFRE-GTGDILV-ATDVAGRGIDIPNVSLVINYDM 594 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHh-cCCCEEE-EecccccCCCCCccceeeecch
Confidence 4679999999999999999999999999999999999999999999998 6677888 5599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1388 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdT 1388 (1431)
.-+-.....||||.+|-|+.-. -+..|...+|
T Consensus 595 aksieDYtHRIGRTgRAGk~Gt-aiSflt~~dt 626 (673)
T KOG0333|consen 595 AKSIEDYTHRIGRTGRAGKSGT-AISFLTPADT 626 (673)
T ss_pred hhhHHHHHHHhccccccccCce-eEEEeccchh
Confidence 9999999999999999998764 2333344443
No 75
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.25 E-value=1.3e-11 Score=114.26 Aligned_cols=81 Identities=31% Similarity=0.488 Sum_probs=74.0
Q ss_pred HHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhh
Q 000549 1291 LLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAH 1370 (1431)
Q Consensus 1291 lLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvh 1370 (1431)
.|...|+..++.+..++|.++.++|.++++.|++ +.. .+|+++.++++|+|++.+++||+++++||+....|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN-GKI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc-CCC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4677888889999999999999999999999998 444 55558899999999999999999999999999999999999
Q ss_pred ccC
Q 000549 1371 RIG 1373 (1431)
Q Consensus 1371 RIG 1373 (1431)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 76
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.24 E-value=4.9e-11 Score=120.25 Aligned_cols=137 Identities=26% Similarity=0.233 Sum_probs=95.1
Q ss_pred CcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccccccccccccCCCCCCccchhh
Q 000549 688 GGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQESDYCRVVPNGSSAKSFNFV 767 (1431)
Q Consensus 688 GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~ 767 (1431)
+.++...+|.|||.+++.++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~------------------------------------------------------ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS------------------------------------------------------ 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc------------------------------------------------------
Confidence 57999999999999999998653210
Q ss_pred hhhcCCCCCcEEEEeChhhH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--ccccCCCEEEEechhhhccCCCCCCC
Q 000549 768 EQAKGRPAAGTLVVCPTSVL-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDP--CELAKFDVVITTYSIVSMEVPKQPLG 844 (1431)
Q Consensus 768 ~~~~~~p~~~TLIVcP~SLL-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~--~~L~~~DVVITTY~~L~~e~~k~~~~ 844 (1431)
...+.+||+||...+ .||.+++.++... .+.+.++++....... ......+|+++||+.+...+..
T Consensus 28 -----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~---- 96 (144)
T cd00046 28 -----LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER---- 96 (144)
T ss_pred -----ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHc----
Confidence 012468999999855 5666777766542 5777777776544322 2246789999999988643210
Q ss_pred CchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCCccccCccEEEEcCccccCChhhHHH
Q 000549 845 DKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVA 924 (1431)
Q Consensus 845 ~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~~s 924 (1431)
..+....|++||+||+|.+.+......
T Consensus 97 -----------------------------------------------------~~~~~~~~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 97 -----------------------------------------------------LKLSLKKLDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred -----------------------------------------------------CCcchhcCCEEEEeCHHHHhhcchHHH
Confidence 002234588999999999988764443
Q ss_pred ---HHHHhcccCcEEEEEccc
Q 000549 925 ---RACWGLRAKRRWCLSGTP 942 (1431)
Q Consensus 925 ---kal~~L~ak~RwlLTGTP 942 (1431)
.........+++++||||
T Consensus 124 ~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 124 GLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhhCCccceEEEEeccC
Confidence 333445778899999998
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.23 E-value=1.1e-09 Score=146.81 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=77.0
Q ss_pred CeEEEEcccHHH---HHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000549 1277 EKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1349 (1431)
Q Consensus 1277 ~KvIVFSq~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S---tkAGg~GLNLq~-An~ 1349 (1431)
.++|||++.... ++.|...|+..|+++..++|.| .+.+++|.+ ++++|||.+ +..++.||++.. ..+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDiP~~Iry 402 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDLPERIRY 402 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCCCcceeE
Confidence 478999998766 9999999999999999999999 334699998 899999986 789999999997 899
Q ss_pred EEEEcCCC------CcChHHHHHHhhhcc
Q 000549 1350 VLLLDLWW------NPTTEDQAIDRAHRI 1372 (1431)
Q Consensus 1350 VI~lDp~W------NP~~e~QAIGRvhRI 1372 (1431)
||+|+.|- .......+++|+-++
T Consensus 403 VI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 403 AIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999996 455566778887643
No 78
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.22 E-value=9e-10 Score=131.71 Aligned_cols=105 Identities=23% Similarity=0.327 Sum_probs=97.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
..+|++||.+-.++++.++.+|...++++..++|.-+..+|.++++.|.. +...|||. |..++.|||.....|||+||
T Consensus 336 ~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pvlVa-T~VaaRGlDi~~V~hVInyD 413 (482)
T KOG0335|consen 336 KWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPVLVA-TNVAARGLDIPNVKHVINYD 413 (482)
T ss_pred ccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcceEEE-ehhhhcCCCCCCCceeEEee
Confidence 34699999999999999999999999999999999999999999999998 88888885 59999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1381 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~Vy 1381 (1431)
.+-+-.....||||..|-|+.-..+..
T Consensus 414 mP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 414 MPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred cCcchhhHHHhccccccCCCCceeEEE
Confidence 999999999999999999998765554
No 79
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.20 E-value=1.6e-09 Score=138.09 Aligned_cols=119 Identities=17% Similarity=0.146 Sum_probs=99.5
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCC-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSS-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
..+|||++-..+.+.+...|++.+ ..+..-+|+++.++|..+-++|++ ++.++++ +|.+...|++.-..+.||.+..
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~-G~lravV-~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE-GELKAVV-ATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc-CCceEEE-EccchhhccccCCceEEEEeCC
Confidence 478999999999999999999886 889999999999999999999999 7799998 5589999999999999999999
Q ss_pred CCCcChHHHHHHhhh-ccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000549 1356 WWNPTTEDQAIDRAH-RIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1401 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvh-RIGQtr~V~VyrLi~kdTIEErIlelq~kK~ 1401 (1431)
|=.-+...||+||+. |+|.+-. .++++.+ .++.+.-+..-+.
T Consensus 332 P~sV~r~lQRiGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADL 374 (814)
T ss_pred cHHHHHHhHhccccccccCCccc---EEEEecC-HHHHHHHHHHHHH
Confidence 999999999999985 5665433 3345555 5555554444443
No 80
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.17 E-value=2e-09 Score=145.13 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=80.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCC---------------------------------CcEEecCCCCCHHHHHHHHHHH
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSS---------------------------------IQYRRLDGTMSVFARDKAVKDF 1322 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~g---------------------------------I~~~rldGsms~~qR~~aI~~F 1322 (1431)
+.++|||++.....+.+...|++.. +....++|+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 3567788887777777777775421 1245788999999999999999
Q ss_pred hcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhcc
Q 000549 1323 NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRI 1372 (1431)
Q Consensus 1323 n~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRI 1372 (1431)
++ +.++||+ +|.+...|||+...+.||+++.+.+.....|++||++|.
T Consensus 324 K~-G~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KS-GELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred Hh-CCceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 98 7888888 669999999999999999999999999999999999985
No 81
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=1.9e-09 Score=123.57 Aligned_cols=110 Identities=27% Similarity=0.353 Sum_probs=99.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
...|+|||+....++|-|.--|.-.||....++|.-.+.+|+.+++.|+. +.++||| .|+.++.||++....||++||
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrILv-aTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRILV-ATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEEEE-EechhhcCCCchhcceeeccC
Confidence 56899999999999999999999999999999999999999999999998 8999998 559999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
.+-|-.....|+||.+|-|.+-. -|..|.-.|
T Consensus 542 FP~nIeeYVHRvGrtGRaGr~G~-sis~lt~~D 573 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRTGRAGRTGT-SISFLTRND 573 (629)
T ss_pred CCccHHHHHHHhcccccCCCCcc-eEEEEehhh
Confidence 99999999999999999998764 444444444
No 82
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.14 E-value=2e-09 Score=129.05 Aligned_cols=108 Identities=23% Similarity=0.242 Sum_probs=96.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
...||||....-++-|+.+|...|+.+..|.|.|+..+|..+++..+. -.++||| |++..+.|++-..+|-||++|++
T Consensus 273 ~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rILV-sTDLtaRGIDa~~vNLVVNiD~p 350 (980)
T KOG4284|consen 273 VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRILV-STDLTARGIDADNVNLVVNIDAP 350 (980)
T ss_pred HHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEEEE-ecchhhccCCccccceEEecCCC
Confidence 567899999999999999999999999999999999999999999987 5688887 78999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1357 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
-+..+...||||++|+|-.- ..|..+..+.
T Consensus 351 ~d~eTY~HRIGRAgRFG~~G-~aVT~~~~~~ 380 (980)
T KOG4284|consen 351 ADEETYFHRIGRAGRFGAHG-AAVTLLEDER 380 (980)
T ss_pred cchHHHHHHhhhcccccccc-eeEEEeccch
Confidence 99999999999999999654 5665554443
No 83
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=5.9e-09 Score=129.92 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=72.8
Q ss_pred HHHHHHHHhC--CCcEEecCCCCCHHHH--HHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC--CC-c---
Q 000549 1290 DLLEASLKDS--SIQYRRLDGTMSVFAR--DKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW--WN-P--- 1359 (1431)
Q Consensus 1290 dlLe~~L~~~--gI~~~rldGsms~~qR--~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~--WN-P--- 1359 (1431)
+.+++.|++. +.++.++|+.++..++ ++++++|.+ +++.||| .|...+.|+++...+.|+++|.+ .+ |
T Consensus 272 e~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~-g~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~r 349 (505)
T TIGR00595 272 EQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN-GKADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFR 349 (505)
T ss_pred HHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc-CCCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccc
Confidence 4455555554 6788999999876665 899999998 7888888 55788999999999999877654 23 4
Q ss_pred ------ChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000549 1360 ------TTEDQAIDRAHRIGQTRPVSVLRLTVK 1386 (1431)
Q Consensus 1360 ------~~e~QAIGRvhRIGQtr~V~VyrLi~k 1386 (1431)
....|+.||+.|-+....|.+..+-..
T Consensus 350 a~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 350 AAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 357899999999887777765544443
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.10 E-value=4.6e-09 Score=137.16 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=95.2
Q ss_pred CCCeEEEEcccHHHHHHHH----HHHHhCC----CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLE----ASLKDSS----IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1346 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe----~~L~~~g----I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1346 (1431)
.+.|.|+|+.+...+..+. ..+...+ .....+.|++...+|.++...|+. +++.+++ ++.|.-.|+.+..
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~-g~~~~~~-st~AlelgidiG~ 382 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE-GELLGVI-ATNALELGIDIGS 382 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc-CCccEEe-cchhhhhceeehh
Confidence 5789999999999999997 4444445 567899999999999999999998 7888888 7899999999999
Q ss_pred cCEEEEEcCCC-CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1347 ACHVLLLDLWW-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1347 An~VI~lDp~W-NP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
.+.||+..-|- .-....|+.||++|-||.-.+.+ ..-.+-++..+...
T Consensus 383 ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~--v~~~~~~d~yy~~~ 431 (851)
T COG1205 383 LDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV--VLRSDPLDSYYLRH 431 (851)
T ss_pred hhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEE--EeCCCccchhhhhC
Confidence 99999998887 55778899999999995544322 22256666665543
No 85
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.09 E-value=6.4e-09 Score=139.84 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=68.9
Q ss_pred CeEEEEcccH---HHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee---ccccccccCccc-cCE
Q 000549 1277 EKAIVFSQWT---KMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS---LKAASLGLNMVA-ACH 1349 (1431)
Q Consensus 1277 ~KvIVFSq~t---~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S---tkAGg~GLNLq~-An~ 1349 (1431)
.++|||++-. ..++.|...|+..|+++..++|.++ ++++++|.+ ++++|||.+ +..++.||++.. ..+
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv~aRGIDip~~V~~ 401 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAE-GEIDVLIGVASYYGTLVRGLDLPERVRY 401 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHc-CCCCEEEEeccccCcccccCCCCccccE
Confidence 5789999988 8999999999999999999999986 478999998 899999987 689999999998 799
Q ss_pred EEEEcCC
Q 000549 1350 VLLLDLW 1356 (1431)
Q Consensus 1350 VI~lDp~ 1356 (1431)
||++|+|
T Consensus 402 vI~~~~P 408 (1171)
T TIGR01054 402 AVFLGVP 408 (1171)
T ss_pred EEEECCC
Confidence 9999988
No 86
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.07 E-value=2.8e-09 Score=126.08 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=77.7
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEE
Q 000549 1300 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVS 1379 (1431)
Q Consensus 1300 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~ 1379 (1431)
+.++.+++|+|++.+|..++..|...... ||| +|++++.||+|.....||-||||..++....||||.-|+|-+-.-.
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~~~-VLL-cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 471 DLKFYRLHGSMEQEERTSVFQEFSHSRRA-VLL-CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred cceEEEecCchhHHHHHHHHHhhccccce-EEE-ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 45699999999999999999999985443 555 7899999999999999999999999999999999999999887633
Q ss_pred EEEEEeCCCHHHHHHHHHHHHHH
Q 000549 1380 VLRLTVKNTVEDRILALQQKKRE 1402 (1431)
Q Consensus 1380 VyrLi~kdTIEErIlelq~kK~~ 1402 (1431)
. |+.....| .+...+++..
T Consensus 549 L--fL~P~Eae--y~~~l~~~~~ 567 (708)
T KOG0348|consen 549 L--FLLPSEAE--YVNYLKKHHI 567 (708)
T ss_pred E--EecccHHH--HHHHHHhhcc
Confidence 3 34444333 4444444443
No 87
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=8e-09 Score=132.23 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=96.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1345 (1431)
.+..+|||+......+.|...|.+.||++..++|.+...+|+.+.++|+. + .|+| +|..+|.|+++.
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~-G--~VtI-ATNmAGRGtDI~Lggn~~~~~ 518 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP-G--AVTI-ATNMAGRGTDIVLGGSLAADL 518 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC-C--cEEE-eccCccCCcceecCCchhhhh
Confidence 68899999999999999999999999999999999999999999999998 3 3666 669999998865
Q ss_pred -----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1346 -----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1346 -----------------------------~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
..=|||.-+.+=|-..+.|..||++|.|..-...+|- |+|+.++.+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l-----SleD~l~~~ 593 (896)
T PRK13104 519 ANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDNLMRI 593 (896)
T ss_pred hccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHH
Confidence 2358999999999999999999999999987644432 556666553
No 88
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.07 E-value=1e-08 Score=126.79 Aligned_cols=103 Identities=20% Similarity=0.233 Sum_probs=95.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
+.-.|||+..+...+.|..+|...|+....|+|+|+.++|+..-++|.+ +++.||++ |.|.|-|+|=...-.||+||+
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~-~~~~iiVA-T~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN-DEIKVMVA-TNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc-CCCcEEEE-eccccCccCCCCceEEEEecC
Confidence 3457999999999999999999999999999999999999999999997 77888884 599999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEE
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSV 1380 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~V 1380 (1431)
|=+.....|=+||++|-|...+...
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail 332 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL 332 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE
Confidence 9999999999999999998876544
No 89
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.07 E-value=1.4e-08 Score=132.09 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=90.7
Q ss_pred CeEEEEcccHHHHHHHHHHHHh---CCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1353 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1353 (1431)
.++|||..-...++.+...|++ .++.++.++|+++.++|.++++.|.. +..+|+| +|..+..||++...++||.+
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~-G~rkVlV-ATnIAErgItIp~V~~VID~ 287 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ-GRRKVVL-ATNIAETSLTIEGIRVVIDS 287 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc-CCeEEEE-ecchHhhcccccCceEEEEc
Confidence 5799999999999999999987 47899999999999999999999987 6677776 78999999999999999998
Q ss_pred cCC----CCcCh--------------HHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000549 1354 DLW----WNPTT--------------EDQAIDRAHRIGQTRPVSVLRLTVKNT 1388 (1431)
Q Consensus 1354 Dp~----WNP~~--------------e~QAIGRvhRIGQtr~V~VyrLi~kdT 1388 (1431)
+.. |||.. ..||.||++|. ++=..|||+.+..
T Consensus 288 Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 288 GLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred CcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 865 56654 56888888776 5667889987653
No 90
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.06 E-value=1.2e-08 Score=121.26 Aligned_cols=122 Identities=25% Similarity=0.243 Sum_probs=102.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
...|+|||-..-....++.+.+.+. |++...++|.|++..|..+..+|.. .-.|+|.+|+.++.||++.+.+.||-
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpaVdwViQ 389 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPAVDWVIQ 389 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCcccceEEE
Confidence 3479999999999899998888764 9999999999999999999999997 44567778999999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHH
Q 000549 1353 LDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1401 (1431)
Q Consensus 1353 lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~ 1401 (1431)
+|.|=+-...+.|+||.-|.+-.-+-.++ ++ -+=||.|+...++|.
T Consensus 390 ~DCPedv~tYIHRvGRtAR~~~~G~sll~--L~-psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 390 VDCPEDVDTYIHRVGRTARYKERGESLLM--LT-PSEEEAMLKKLQKKK 435 (758)
T ss_pred ecCchhHHHHHHHhhhhhcccCCCceEEE--Ec-chhHHHHHHHHHHcC
Confidence 99999999999999999999877665443 22 244577777666663
No 91
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.05 E-value=1.1e-08 Score=120.85 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=90.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
.|||||+..-.+..++...|+...+++..|+|.+++..|.....+|.+ .+.- +|++|++++.|++....+.||-||||
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k-aesg-IL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK-AESG-ILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh-cccc-eEEecchhhccCCCCCceEEEEeCCC
Confidence 799999999999999999999999999999999999999999999998 3333 45577999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCc
Q 000549 1357 WNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
-+|...+.|+||..|-|-+-.
T Consensus 409 ~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 409 SDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred CCHHHHHHHhccccccCCCce
Confidence 999999999999999776544
No 92
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.00 E-value=1.4e-08 Score=131.17 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEE----EEc-----CCCCcC
Q 000549 1290 DLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL----LLD-----LWWNPT 1360 (1431)
Q Consensus 1290 dlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI----~lD-----p~WNP~ 1360 (1431)
..++..+. .|+ ..-+.+++.++|+-+-+.|+. +.++||+ +|...+.|+||++-..|| .+| -.-++.
T Consensus 307 ~~l~e~v~-~Gv--afHhAGL~~~~R~~vE~~Fr~-g~ikVlv-~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~ 381 (766)
T COG1204 307 EELAELVL-RGV--AFHHAGLPREDRQLVEDAFRK-GKIKVLV-STPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVL 381 (766)
T ss_pred HHHHHHHH-hCc--cccccCCCHHHHHHHHHHHhc-CCceEEE-echHHhhhcCCcceEEEEeeeEEEcCCCCeEECchh
Confidence 45555554 344 447889999999999999998 8999998 668999999999654443 244 223566
Q ss_pred hHHHHHHhhhccCCC
Q 000549 1361 TEDQAIDRAHRIGQT 1375 (1431)
Q Consensus 1361 ~e~QAIGRvhRIGQt 1375 (1431)
...|-+||++|.|=.
T Consensus 382 dv~QM~GRAGRPg~d 396 (766)
T COG1204 382 DVLQMAGRAGRPGYD 396 (766)
T ss_pred hHhhccCcCCCCCcC
Confidence 778999999999843
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=1.2e-08 Score=130.05 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=85.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---ccC---
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV---AAC--- 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq---~An--- 1348 (1431)
.+..+|||+......+.|...|.+.|+++..++|.+...+++.+..+|+. ..|+| +|..+|.|++.. ...
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~---g~VtI-ATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR---GAVTI-ATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC---ceEEE-EeccccCCCCCCCCcchhhhC
Confidence 57899999999999999999999999999999999875555555555544 23666 669999999984 566
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcE
Q 000549 1349 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPV 1378 (1431)
Q Consensus 1349 --~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V 1378 (1431)
|||.++++-+...+.|++||+.|.|..-..
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 999999999999999999999999988764
No 94
>PRK09694 helicase Cas3; Provisional
Probab=98.99 E-value=1.2e-07 Score=123.66 Aligned_cols=98 Identities=11% Similarity=0.150 Sum_probs=79.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCC---CcEEecCCCCCHHHH----HHHHHHHhcCCCc--cEEEeeccccccccCcc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFAR----DKAVKDFNTLPEV--SVMIMSLKAASLGLNMV 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR----~~aI~~Fn~d~~v--~VLL~StkAGg~GLNLq 1345 (1431)
.+.++|||++....+..+.+.|++.+ +.+..++|.++..+| +++++.|..++.. ..+|++|.+...||++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 56799999999999999999998764 678999999999999 5688899443332 2345588999999999
Q ss_pred ccCEEEEEcCCCCcChHHHHHHhhhccCCC
Q 000549 1346 AACHVLLLDLWWNPTTEDQAIDRAHRIGQT 1375 (1431)
Q Consensus 1346 ~An~VI~lDp~WNP~~e~QAIGRvhRIGQt 1375 (1431)
.++.||....+ .....||+||+||-|.+
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 56877775443 46789999999999875
No 95
>PRK14701 reverse gyrase; Provisional
Probab=98.99 E-value=5e-08 Score=134.02 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=78.5
Q ss_pred CCeEEEEcccHHH---HHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec---cccccccCccc-cC
Q 000549 1276 GEKAIVFSQWTKM---LDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL---KAASLGLNMVA-AC 1348 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~---LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St---kAGg~GLNLq~-An 1348 (1431)
+...|||++.... ++.|...|...|+++..++|. |.+++++|.+ ++++|||.+. ..++.||++.. ..
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~~Vr 403 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPERIR 403 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCCccC
Confidence 3578999987653 589999999999999999995 9999999998 8999999774 57889999997 89
Q ss_pred EEEEEcCCC---CcChHHH-------------HHHhhhccCCC
Q 000549 1349 HVLLLDLWW---NPTTEDQ-------------AIDRAHRIGQT 1375 (1431)
Q Consensus 1349 ~VI~lDp~W---NP~~e~Q-------------AIGRvhRIGQt 1375 (1431)
+|||+|.|= +-..+.| .++|+.|-|..
T Consensus 404 yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 404 FAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999999986 5444444 45999998864
No 96
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.97 E-value=5.7e-08 Score=114.42 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=99.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
..|+|||..-....+-|...|+..|+.+..++|.|.+++|.+.+..|+. ....||+++ +.+..||+...-.+||+||.
T Consensus 468 ~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk-k~~~Vlvat-DvaargldI~~ikTVvnyD~ 545 (731)
T KOG0339|consen 468 EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK-KRKPVLVAT-DVAARGLDIPSIKTVVNYDF 545 (731)
T ss_pred CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh-cCCceEEEe-eHhhcCCCccccceeecccc
Confidence 3689999999999999999999999999999999999999999999998 667788855 99999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1390 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIE 1390 (1431)
.-.-....|+|||..|-|-+ =..|.|+++...+
T Consensus 546 ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 546 ARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 88888889999999999988 3567788776554
No 97
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.97 E-value=6.8e-08 Score=126.10 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=89.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh---CCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKD---SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~---~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
...+|||..-...++.+...|.. .++.+..++|.++.++|.++++.|.. +..+|+| +|..+..||++....+||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rkVlv-ATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRKVVL-ATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeEEEE-ecchHHhcccccCceEEEE
Confidence 35799999999999999999987 57889999999999999999999986 6667766 7799999999999999999
Q ss_pred EcCC----CCcC--------------hHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000549 1353 LDLW----WNPT--------------TEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1389 (1431)
Q Consensus 1353 lDp~----WNP~--------------~e~QAIGRvhRIGQtr~V~VyrLi~kdTI 1389 (1431)
++.. |+|. ...||.||++|. ++=+.|||+++...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 7654 4443 356777777665 57889999876543
No 98
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.95 E-value=2.7e-08 Score=118.59 Aligned_cols=118 Identities=18% Similarity=0.267 Sum_probs=98.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL---- 1352 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~---- 1352 (1431)
...|||+...+-...|+.+|...|++..-|+++++..+|..+-..|.. .++.+++ +|.|.|.|+++.+ +.|||
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~-q~l~~VV-TTAAL~AGVDFPA-SQVIFEsLa 517 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA-QELAAVV-TTAALAAGVDFPA-SQVIFESLA 517 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc-CCcceEe-ehhhhhcCCCCch-HHHHHHHHH
Confidence 468999999999999999999999999999999999999999999998 7788877 7799999999985 44544
Q ss_pred EcCCC-CcChHHHHHHhhhccCCCCcEEEEEEEeC---------CCHHHHHHHHH
Q 000549 1353 LDLWW-NPTTEDQAIDRAHRIGQTRPVSVLRLTVK---------NTVEDRILALQ 1397 (1431)
Q Consensus 1353 lDp~W-NP~~e~QAIGRvhRIGQtr~V~VyrLi~k---------dTIEErIlelq 1397 (1431)
|.-.| +|....|..||++|.|-...=.||-++-. +|=|+.-+.++
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL 572 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLL 572 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHh
Confidence 44445 99999999999999998776677777643 45555555544
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.94 E-value=1.8e-07 Score=121.42 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=73.7
Q ss_pred CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC-CCcChHHHHHHhhhccCCCCcEE
Q 000549 1301 IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW-WNPTTEDQAIDRAHRIGQTRPVS 1379 (1431)
Q Consensus 1301 I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~-WNP~~e~QAIGRvhRIGQtr~V~ 1379 (1431)
.++.+.+|.|+..+-++++.+|.+ ++..||| +|...-.||+...||++|+-+.. +--+..-|--|||+|- ++.-+
T Consensus 830 arI~vaHGQM~e~eLE~vM~~F~~-g~~dVLv-~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AY 905 (1139)
T COG1197 830 ARIAVAHGQMRERELEEVMLDFYN-GEYDVLV-CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAY 905 (1139)
T ss_pred eEEEEeecCCCHHHHHHHHHHHHc-CCCCEEE-EeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEE
Confidence 456788999999999999999998 8899999 55889999999999999997655 4667888999999994 34457
Q ss_pred EEEEEeCC-----CHHHHHHHHHH
Q 000549 1380 VLRLTVKN-----TVEDRILALQQ 1398 (1431)
Q Consensus 1380 VyrLi~kd-----TIEErIlelq~ 1398 (1431)
-|-|+..+ ..+.|+..++.
T Consensus 906 AYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 906 AYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred EEEeecCccccCHHHHHHHHHHHh
Confidence 77777643 23444444443
No 100
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.91 E-value=2e-08 Score=118.31 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=91.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
.++|||.+-...+.-+.-.|--.|++...++|+.++.||-.+++.|++ ..+.||| +|+.++.||+.....+||+|+.|
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidvLi-aTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDVLI-ATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCEEE-EechhhccCCccceeEEEeccCc
Confidence 688999999999999999999999999999999999999999999998 8899999 56999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCC
Q 000549 1357 WNPTTEDQAIDRAHRIGQT 1375 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQt 1375 (1431)
-.-..+..|+||.-|-|..
T Consensus 505 ~t~e~Y~HRVGRTARAGRa 523 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRA 523 (691)
T ss_pred hhHHHHHHHhhhhhhcccC
Confidence 8888999999999998864
No 101
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=1.8e-07 Score=120.11 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=95.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-------- 1346 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~-------- 1346 (1431)
.+..+||||......+.|...|.+.|+++..++|. ..+|++.|.+|.. ....|+| +|..+|.|+++.-
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag-~~g~VtI-ATNmAGRGtDI~LgGn~~~~~ 504 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG-RPGAVTI-ATNMAGRGTDIKLGGNPEMLA 504 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC-CCceEEE-ecccccCCcCccCCCchhhhh
Confidence 57899999999999999999999999999999996 6799999999997 6667777 5699999988652
Q ss_pred ------------------------------cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000549 1347 ------------------------------ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1395 (1431)
Q Consensus 1347 ------------------------------An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIle 1395 (1431)
.=|||.-+.+=|-..+.|..||++|.|..-....|- |+|+.++.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~ 578 (830)
T PRK12904 505 AALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMR 578 (830)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHH
Confidence 468999999999999999999999999987754442 45555544
No 102
>COG4889 Predicted helicase [General function prediction only]
Probab=98.87 E-value=2.6e-08 Score=122.62 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=60.0
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhc-C-CCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCC
Q 000549 1300 SIQYRRLDGTMSVFARDKAVKDFNT-L-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1300 gI~~~rldGsms~~qR~~aI~~Fn~-d-~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr 1376 (1431)
.+...-+||.|+..+|.+.+..=+. . .+++|| -..++.++|++..+-+.|||++|--.-....||+|||-|----|
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIl-SNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKIL-SNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheee-ccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCC
Confidence 3456789999999999666554433 2 345555 48899999999999999999999877777889999999965443
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.83 E-value=2e-07 Score=119.36 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=96.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1345 (1431)
.|..+|||+......+.|...|...|+++..+++.+...+|+.+.++|+. +. |+| +|..+|.|+++.
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~-G~--VtI-ATnmAGRGTDIkLggn~~~~~ 523 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT-GA--VTI-ATNMAGRGTDIVLGGNWNMEI 523 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC-Cc--EEE-ecCCcCCCcceecCCchHHhh
Confidence 68999999999999999999999999999999999999999999999997 43 555 669999998865
Q ss_pred ----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1346 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1346 ----------------------------~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
..=|||.-+.+=|-.++.|..||++|.|..-.-.+|- |+|+.++.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~l-----SlED~L~r~ 597 (908)
T PRK13107 524 EALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYL-----SMEDSLMRI 597 (908)
T ss_pred hhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEE-----EeCcHHHHH
Confidence 2358999999999999999999999999877633332 556655543
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=98.82 E-value=3e-08 Score=108.83 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=75.0
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 000549 664 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 743 (1431)
Q Consensus 664 ~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 743 (1431)
.++++|++++.-+++ ++..+++-..|.|||++.+..+......
T Consensus 21 ~~~~~Q~~~~~~~~~-------~~~~li~~~TG~GKT~~~~~~~l~~~~~------------------------------ 63 (203)
T cd00268 21 KPTPIQARAIPPLLS-------GRDVIGQAQTGSGKTAAFLIPILEKLDP------------------------------ 63 (203)
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHHHHh------------------------------
Confidence 478999999998884 2568999999999999854333221100
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-cccc
Q 000549 744 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD-PCEL 821 (1431)
Q Consensus 744 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~-~~~L 821 (1431)
........+|||||.. ++.||...++++.. ...+++..++|...... ...+
T Consensus 64 --------------------------~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 64 --------------------------SPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred --------------------------hcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCceEEEEECCCCHHHHHHHh
Confidence 0000123589999986 78999999988764 34688888888654322 2223
Q ss_pred -cCCCEEEEechhhhc
Q 000549 822 -AKFDVVITTYSIVSM 836 (1431)
Q Consensus 822 -~~~DVVITTY~~L~~ 836 (1431)
...+|+|+|.+.+..
T Consensus 117 ~~~~~iiv~T~~~l~~ 132 (203)
T cd00268 117 KRGPHIVVATPGRLLD 132 (203)
T ss_pred cCCCCEEEEChHHHHH
Confidence 378999999887753
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=3.6e-06 Score=108.62 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=94.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An------ 1348 (1431)
.+..+|||+......+.|.+.|...||++..+++ ...+|++.|.+|.. ....|+| +|..+|.|+++.-..
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG-~~g~VtI-ATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG-QKGAVTI-ATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC-CCCeEEE-eccCcCCCCCcCCccchhhhC
Confidence 5789999999999999999999999999999997 47899999999998 5567777 669999999988333
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000549 1349 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1397 (1431)
Q Consensus 1349 --~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq 1397 (1431)
+||..+.+-+...+.|++||++|.|..-....+ + |.|+.++.+-
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff--v---SleD~Lmr~f 718 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY--V---SLEDELMRLF 718 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE--e---chhHHHHHhh
Confidence 458889999999999999999999988763222 2 5666666543
No 106
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.58 E-value=2.6e-07 Score=105.96 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=95.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
...|||++-..++..|...|...|.++..++|.+...+|.+++++|+. +..+||| +|...+.|++.+..+.||+||++
T Consensus 331 gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~-g~~kVLi-tTnV~ARGiDv~qVs~VvNydlP 408 (477)
T KOG0332|consen 331 GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE-GKEKVLI-TTNVCARGIDVAQVSVVVNYDLP 408 (477)
T ss_pred hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc-CcceEEE-EechhhcccccceEEEEEecCCc
Confidence 467999999999999999999999999999999999999999999998 7788888 77999999999999999999998
Q ss_pred C------CcChHHHHHHhhhccCCCCcEEEEEEEe-CCCHH
Q 000549 1357 W------NPTTEDQAIDRAHRIGQTRPVSVLRLTV-KNTVE 1390 (1431)
Q Consensus 1357 W------NP~~e~QAIGRvhRIGQtr~V~VyrLi~-kdTIE 1390 (1431)
- .+.+...||||.+|.|.+- +-+- |+- +++.+
T Consensus 409 ~~~~~~pD~etYlHRiGRtGRFGkkG-~a~n-~v~~~~s~~ 447 (477)
T KOG0332|consen 409 VKYTGEPDYETYLHRIGRTGRFGKKG-LAIN-LVDDKDSMN 447 (477)
T ss_pred cccCCCCCHHHHHHHhcccccccccc-eEEE-eecccCcHH
Confidence 4 3457789999999999665 3333 554 44443
No 107
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.57 E-value=6.8e-06 Score=110.08 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=84.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCc---EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQ---YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~---~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
..++|||..-...++.+...|+..+++ +..++|.++.++|.++++. .+..+|+| +|..+..||++....+||.
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~---~g~rkIIV-ATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS---HSGRRIVL-ATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc---cCCeeEEE-eccHHhhccccCcceEEEE
Confidence 467999999999999999999988765 5678999999999988665 34566665 8899999999999999999
Q ss_pred Ec---------------CCCCc---ChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000549 1353 LD---------------LWWNP---TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1390 (1431)
Q Consensus 1353 lD---------------p~WNP---~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIE 1390 (1431)
++ ++-.| +...||.||++|. ++=..|+|+++...+
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 75 33334 3456666666665 566788998865443
No 108
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.57 E-value=1.4e-06 Score=99.94 Aligned_cols=246 Identities=20% Similarity=0.208 Sum_probs=142.8
Q ss_pred CcHHHHHHHHHHHHhhccCC---CCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000549 665 LLRHQRIALSWMVQKETSSL---HCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 741 (1431)
Q Consensus 665 L~phQk~al~wMl~rE~~~~---~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 741 (1431)
|=.-|+++|.+..++....+ .-.|-+|+|-+|.||-.++-++|.....
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l----------------------------- 88 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL----------------------------- 88 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-----------------------------
Confidence 56789999999887755322 3367899999999999999888875321
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc
Q 000549 742 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL 821 (1431)
Q Consensus 742 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L 821 (1431)
..+.+++-|-+...|..-=++.+... . ...+.+.....-++.. . .-
T Consensus 89 ------------------------------~Gr~r~vwvS~s~dL~~Da~RDl~DI-G-~~~i~v~~l~~~~~~~-~-~~ 134 (303)
T PF13872_consen 89 ------------------------------RGRKRAVWVSVSNDLKYDAERDLRDI-G-ADNIPVHPLNKFKYGD-I-IR 134 (303)
T ss_pred ------------------------------cCCCceEEEECChhhhhHHHHHHHHh-C-CCcccceechhhccCc-C-CC
Confidence 01123455555666766555555432 2 1123333332222111 1 11
Q ss_pred cCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCCcc
Q 000549 822 AKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLA 901 (1431)
Q Consensus 822 ~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~ 901 (1431)
.+.+|+.+||.+|..+..+. .+ .+.+++ .+.++ +.
T Consensus 135 ~~~GvlF~TYs~L~~~~~~~---------------------------~~-------------~~sRl~-ql~~W----~g 169 (303)
T PF13872_consen 135 LKEGVLFSTYSTLISESQSG---------------------------GK-------------YRSRLD-QLVDW----CG 169 (303)
T ss_pred CCCCccchhHHHHHhHHhcc---------------------------CC-------------ccchHH-HHHHH----Hh
Confidence 25679999999997542100 00 000000 00001 00
Q ss_pred ccCc-cEEEEcCccccCChhh------HHHHHHHhcc----cCcEEEEEcccCCCChHHHHhhhhcc--c-cCCccchHH
Q 000549 902 KVGW-FRVVLDEAQSIKNHRT------QVARACWGLR----AKRRWCLSGTPIQNAIDDLYSYFRFL--R-YDPFAVYKS 967 (1431)
Q Consensus 902 ~i~W-~rVILDEAH~IKN~~T------~~skal~~L~----ak~RwlLTGTPIqN~l~DLyslL~FL--~-p~~f~~~~~ 967 (1431)
-.| .+||+||||..||-.+ ++..++..|+ .-+.+-.|||.... +..|.-+-++- . ..+|.++.+
T Consensus 170 -~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~ 247 (303)
T PF13872_consen 170 -EDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDD 247 (303)
T ss_pred -cCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHH
Confidence 111 3799999999999644 6677776663 34678899999743 44443222211 1 235677788
Q ss_pred HHhHhccCCCCCchhhHHHHHHHH--hhhhhhhccccccCCCCccCCCCcEEEEEEecCCHHHHHHHHH
Q 000549 968 FCSMIKVPISKNPVKGYKKLQAVL--KTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQ 1034 (1431)
Q Consensus 968 F~~~i~~pi~~~~~~~~~~L~~lL--~~~mLRRtK~dV~dg~pii~LPpk~e~vv~v~lS~eEre~Y~~ 1034 (1431)
|...++ ++....++.+..-| ...+++|.. .+-.....++.+++++++.+.|+.
T Consensus 248 f~~a~~----~gGv~amE~vA~dlKa~G~yiaR~L----------Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 248 FLEAME----KGGVGAMEMVAMDLKARGMYIARQL----------SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHH----hcCchHHHHHHHHHHhcchheeeec----------ccCCceEEEEEecCCHHHHHHhcC
Confidence 877654 33333344443333 335666664 344567888999999999999974
No 109
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.56 E-value=3.8e-07 Score=96.68 Aligned_cols=158 Identities=22% Similarity=0.277 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccc
Q 000549 667 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 746 (1431)
Q Consensus 667 phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 746 (1431)
|+|.+++.-+.+. +-.|+.-.+|.|||..++-.++.....
T Consensus 2 ~~Q~~~~~~i~~~-------~~~li~aptGsGKT~~~~~~~l~~~~~--------------------------------- 41 (169)
T PF00270_consen 2 PLQQEAIEAIISG-------KNVLISAPTGSGKTLAYILPALNRLQE--------------------------------- 41 (169)
T ss_dssp HHHHHHHHHHHTT-------SEEEEECSTTSSHHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHHHHHHHcC-------CCEEEECCCCCccHHHHHHHHHhhhcc---------------------------------
Confidence 7999999988832 236999999999999887555431100
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-C-cccc-c
Q 000549 747 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-D-PCEL-A 822 (1431)
Q Consensus 747 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-~-~~~L-~ 822 (1431)
. ..+.+||+||.. ++.|-.+++.+++.. ..+++..++|..... . ...+ .
T Consensus 42 -------------------------~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 94 (169)
T PF00270_consen 42 -------------------------G-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHGGQSISEDQREVLSN 94 (169)
T ss_dssp -------------------------T-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEESTTSCHHHHHHHHHHT
T ss_pred -------------------------C-CCceEEEEeecccccccccccccccccc-cccccccccccccccccccccccc
Confidence 0 112589999975 888999999888763 457888888765422 1 1223 4
Q ss_pred CCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCCccc
Q 000549 823 KFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAK 902 (1431)
Q Consensus 823 ~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~ 902 (1431)
..+|+|+|++.+...+.. . ...+.
T Consensus 95 ~~~ilv~T~~~l~~~~~~-----------------~--------------------------------------~~~~~- 118 (169)
T PF00270_consen 95 QADILVTTPEQLLDLISN-----------------G--------------------------------------KINIS- 118 (169)
T ss_dssp TSSEEEEEHHHHHHHHHT-----------------T--------------------------------------SSTGT-
T ss_pred cccccccCcchhhccccc-----------------c--------------------------------------ccccc-
Confidence 699999999999643210 0 00122
Q ss_pred cCccEEEEcCccccCCh--hhHHHHHHHhc---ccCcEEEEEcccCCCChHH
Q 000549 903 VGWFRVVLDEAQSIKNH--RTQVARACWGL---RAKRRWCLSGTPIQNAIDD 949 (1431)
Q Consensus 903 i~W~rVILDEAH~IKN~--~T~~skal~~L---~ak~RwlLTGTPIqN~l~D 949 (1431)
...+||+||+|.+... .......+..+ +..+.+++||||- ..+++
T Consensus 119 -~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 119 -RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp -TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred -cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 2578999999998652 22233333333 2356899999997 55544
No 110
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.55 E-value=6.3e-06 Score=110.70 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=85.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
..++|||..-...++.+...|+..+ +.+..++|.++.++|.++++.+ +..+|+| +|..+..||++....+||.
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkIVL-ATNIAEtSLTIpgV~yVID 354 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRIVL-ATNVAETSLTVPGIHYVID 354 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceEEE-eccHHHhccccCCeeEEEe
Confidence 3579999999999999999998764 4578899999999999885443 3345555 8899999999999999998
Q ss_pred EcCC----C--------------CcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000549 1353 LDLW----W--------------NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1390 (1431)
Q Consensus 1353 lDp~----W--------------NP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIE 1390 (1431)
++.. + +.+...||.||++|.| +=.+|||+++...+
T Consensus 355 sGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 355 TGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred CCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 7732 2 2246678888888887 66788999876544
No 111
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.52 E-value=3.1e-07 Score=105.21 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=106.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
..-+||||+.-..-.|-|.++|--.|+..+.|+|+-..++|..+|+.|+. +...||+ .|+.++-||+++...|||+||
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~-gkKDVLV-ATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRA-GKKDVLV-ATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhc-CCCceEE-EecchhccCCCccchhhccCC
Confidence 34689999999999999999999999999999999999999999999998 7778888 459999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH----HHHHHHHH
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA----LQQKKREM 1403 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIle----lq~kK~~l 1403 (1431)
.+-.-.....||||.+|-|.|-- -..||-+++-|.-+++ +++.|+++
T Consensus 498 MP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlDLK~LL~EakQ~v 548 (610)
T KOG0341|consen 498 MPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLDLKHLLQEAKQEV 548 (610)
T ss_pred ChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHHHHHHHHHhhccC
Confidence 98877788899999999887764 3346777776665555 45666653
No 112
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.49 E-value=3.3e-06 Score=108.22 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=92.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
..|+|||++--.-+|.|.+.|.+.|+....++|..+..+|...+++|++ +.+.+|| .|...+.||+...-..||+||.
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~-~~~~LLv-aTsvvarGLdv~~l~Lvvnyd~ 690 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN-GVVNLLV-ATSVVARGLDVKELILVVNYDF 690 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc-cCceEEE-ehhhhhcccccccceEEEEccc
Confidence 5799999999999999999999999999999999999999999999998 4455555 6689999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1386 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~k 1386 (1431)
+=.......|.||..|-|.+- .-|.|+..
T Consensus 691 pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 691 PNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred chhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 866667778888888887776 44445555
No 113
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.49 E-value=1e-05 Score=103.00 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=64.1
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCCcCh----------HHHHHHhhhccCCC
Q 000549 1306 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTT----------EDQAIDRAHRIGQT 1375 (1431)
Q Consensus 1306 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~----------e~QAIGRvhRIGQt 1375 (1431)
-+.+|...+|+..=+-|.. +.++||. +|...+-|+||.+-..+|-=-+.|++.. ..|-+||++|..=.
T Consensus 402 HhAGm~r~DR~l~E~~F~~-G~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 402 HHAGMLRSDRQLVEKEFKE-GHIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred cccccchhhHHHHHHHHhc-CCceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 4677889999999999998 8899988 6689999999998777776677777765 57999999998755
Q ss_pred CcEEEEEEEeCCCHH
Q 000549 1376 RPVSVLRLTVKNTVE 1390 (1431)
Q Consensus 1376 r~V~VyrLi~kdTIE 1390 (1431)
..=..+-+.+.++++
T Consensus 480 ~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLD 494 (1230)
T ss_pred CCceEEEEecccHHH
Confidence 544444455555443
No 114
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.47 E-value=1.8e-05 Score=97.62 Aligned_cols=87 Identities=26% Similarity=0.330 Sum_probs=67.1
Q ss_pred HHHHhcCCCccEEEeeccccccccCccccCEE--------EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000549 1319 VKDFNTLPEVSVMIMSLKAASLGLNMVAACHV--------LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1390 (1431)
Q Consensus 1319 I~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V--------I~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIE 1390 (1431)
.++|-. ++..|-|+| .|++.|+.||.-.+| |-++++|....-+|-+||.||-.|..--..+.||.+=-=|
T Consensus 850 KqrFM~-GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMD-GEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhcc-ccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 345665 778888888 899999999965443 5699999999999999999999998876666677665556
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000549 1391 DRILALQQKKREMVASA 1407 (1431)
Q Consensus 1391 ErIlelq~kK~~l~~~~ 1407 (1431)
.|...+..++.+-.-++
T Consensus 928 rRFAS~VAKRLESLGAL 944 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGAL 944 (1300)
T ss_pred hHHHHHHHHHHHhhccc
Confidence 67766666666555333
No 115
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.44 E-value=1.4e-06 Score=111.60 Aligned_cols=117 Identities=24% Similarity=0.295 Sum_probs=97.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.++|||+.....++.|...|...|+++..++|.++..+|.++++.|+. +.+.||| ++...+.|+++..++.||++|
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~VLV-~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCceEEE-EcChhcCCeeeCCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 7788877 668999999999999999999
Q ss_pred -----CCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC--HHHHHHHH
Q 000549 1355 -----LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT--VEDRILAL 1396 (1431)
Q Consensus 1355 -----p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdT--IEErIlel 1396 (1431)
.+=+.....|++||+.|.. .- .|+.|+...| +...|.+.
T Consensus 519 adifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 3446778899999999963 22 3555555544 44444443
No 116
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.41 E-value=7.7e-06 Score=95.28 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=73.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHH------------HHHhc--CCCccEEEeecccccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAV------------KDFNT--LPEVSVMIMSLKAASL 1340 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI------------~~Fn~--d~~v~VLL~StkAGg~ 1340 (1431)
.+.++||.++...++|+||.+|.-.++.|.|+.|.+-..+....- ..... ...+.|.|+++.-...
T Consensus 116 ~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~ 195 (297)
T PF11496_consen 116 YPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYN 195 (297)
T ss_dssp SSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---T
T ss_pred CCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccc
Confidence 468999999999999999999999999999999987655544333 11111 1356677766554433
Q ss_pred ----ccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHH
Q 000549 1341 ----GLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQK 1399 (1431)
Q Consensus 1341 ----GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~k 1399 (1431)
.++-...+.||-+|+.+++....-..-|.+.-.+ +.+-|+||+..+|+|--++.....
T Consensus 196 ~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 196 NKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp TTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTTT
T ss_pred cCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccCc
Confidence 2334467899999999999876644444443333 889999999999999988876663
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.40 E-value=2.9e-05 Score=98.02 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=85.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1345 (1431)
.+..|||.+.....-+.|...|.+.||++.+++..-. ++-..+|.+==. .-.|-| +|.-+|.|-++.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG~--~gaVTI-ATNMAGRGTDIkLg~~~~~~~ 501 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAGK--YGAVTV-STQMAGRGTDIRLGGSDEADR 501 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcCC--CCcEEE-EecCCCCccCeecCCCcccch
Confidence 6889999999999999999999999999999998743 233344433221 233445 668888887755
Q ss_pred ------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q 000549 1346 ------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQ 1397 (1431)
Q Consensus 1346 ------~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq 1397 (1431)
..=|||.-+.+=|-..+.|..||+.|.|..-...+|- |+|+.++.+-
T Consensus 502 ~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f 554 (764)
T PRK12326 502 DRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAAN 554 (764)
T ss_pred HHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhc
Confidence 3458999999999999999999999999987644432 5566655443
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.36 E-value=4.4e-05 Score=99.88 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=98.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhc---CCCccEEEeeccccccccCccccCEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT---LPEVSVMIMSLKAASLGLNMVAACHVL 1351 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~---d~~v~VLL~StkAGg~GLNLq~An~VI 1351 (1431)
.+.|++|-++-...+.-+...|+..+..+..+++.+...+|.+.++...+ ..+..|+| +|.+.-.|+++. .+.+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvV-aTQVIEagvDid-fd~m- 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVV-ATQVIEAGVDID-FDVL- 515 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEE-EeeEEEEEeccc-cCee-
Confidence 56899999999999999999999987789999999999999999987663 23445555 889999999998 4444
Q ss_pred EEcCCCCcChHHHHHHhhhccC--CCCcEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 000549 1352 LLDLWWNPTTEDQAIDRAHRIG--QTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1405 (1431)
Q Consensus 1352 ~lDp~WNP~~e~QAIGRvhRIG--Qtr~V~VyrLi~kdTIEErIlelq~kK~~l~~ 1405 (1431)
+-|+. -.....||.||++|-| ....++|+...-......+.++....+.....
T Consensus 516 ITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (733)
T COG1203 516 ITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLE 570 (733)
T ss_pred eecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccc
Confidence 44443 2467889999999999 45558888777777777777776666655443
No 119
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.33 E-value=5.6e-06 Score=106.64 Aligned_cols=107 Identities=24% Similarity=0.313 Sum_probs=93.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+.++|||+.....++.|...|...|+++..++|.++..+|..+++.|+. +.+.|+| ++...+.|+++..++.||++|
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~vlV-~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCceEEE-EeCHHhCCccccCCcEEEEeC
Confidence 67899999999999999999999999999999999999999999999987 6777776 669999999999999999999
Q ss_pred C-----CCCcChHHHHHHhhhccCCCCcEEEEEEEeC
Q 000549 1355 L-----WWNPTTEDQAIDRAHRIGQTRPVSVLRLTVK 1386 (1431)
Q Consensus 1355 p-----~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~k 1386 (1431)
. +-++....|++||+.|- . .=.++.|+..
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred CcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 6 34778899999999993 3 2235555553
No 120
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.27 E-value=6.3e-07 Score=100.85 Aligned_cols=98 Identities=19% Similarity=0.304 Sum_probs=93.1
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
...||||+.+...++|+.-+.+.|+....++..|..+.|.++..+|++ +.++.|++| +..-.|++.|+.|.||++|-+
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crnLVct-DL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRNLVCT-DLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccceeeeh-hhhhcccccceeeEEEecCCC
Confidence 478999999999999999999999999999999999999999999998 899999965 899999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCC
Q 000549 1357 WNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr 1376 (1431)
-|+.....||||.+|.|---
T Consensus 401 k~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 401 KNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred CCHHHHHHHccCCccCCCcc
Confidence 99999999999999999654
No 121
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.26 E-value=0.0017 Score=78.63 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=102.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.+++++|-+=-..|++-|..+|.+.||++..++.....-+|..+|++.+. +.+.||+ -..-.-+||+|..++-|.++|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~DvLV-GINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDVLV-GINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccEEE-eehhhhccCCCcceeEEEEee
Confidence 67999999999999999999999999999999999999999999999998 8888888 578899999999999999999
Q ss_pred CC-----CCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHH
Q 000549 1355 LW-----WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKK 1400 (1431)
Q Consensus 1355 p~-----WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK 1400 (1431)
.. -+-....|-|||+-|--.-+ |..|-=.+-++++..|-+..+++
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred cCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHHH
Confidence 76 46778999999999943222 44443334456676666655443
No 122
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.21 E-value=2.1e-06 Score=98.16 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=78.8
Q ss_pred HHHHHHhcCCCccEEEeeccccccccCcccc-------CEE-EEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCC
Q 000549 1317 KAVKDFNTLPEVSVMIMSLKAASLGLNMVAA-------CHV-LLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNT 1388 (1431)
Q Consensus 1317 ~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A-------n~V-I~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdT 1388 (1431)
...+.|++ ++..|+|+| .||+.|+.|++- -|| |.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~-g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD-GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC-CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 56778998 788999998 999999999952 344 67999999999999999999999999866666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q 000549 1389 VEDRILALQQKKREMVASAFGEDE 1412 (1431)
Q Consensus 1389 IEErIlelq~kK~~l~~~~lg~d~ 1412 (1431)
.|.|......+|.+-..++...+.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 899999999999988766654443
No 123
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.21 E-value=0.00021 Score=93.30 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHHHHHH
Q 000549 1348 CHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKRE 1402 (1431)
Q Consensus 1348 n~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlelq~kK~~ 1402 (1431)
++||+|||.-..-+..|. -|++|.|. ++.||.|+..+|+||.-+....+|.+
T Consensus 478 ~~VImYEP~~sfIR~IEv-yra~r~~r--~~rVyfL~y~~S~EEq~yl~sirrEK 529 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEV-YKASRPLR--PLRVYFLYYGGSIEEQRYLTSLRREK 529 (814)
T ss_pred CEEEEECCChHHHHHHHH-HHccCCCC--CcEEEEEEECCcHHHHHHHHHHHHHH
Confidence 899999996444444441 24455444 38999999999999976665554443
No 124
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.16 E-value=6.7e-06 Score=94.26 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=94.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
+..-++||.|-+.+..+|...|+..++..+.+++-|++.+|-.++.+|+. ...+|||+ |++++.||+.....-||++|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~ilia-TDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARILIA-TDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccEEEE-echhhcCCCCCceeEEEecC
Confidence 45789999999999999999999999999999999999999999999998 77888885 59999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCc
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
.|-.|.....|+||.-|-|..-.
T Consensus 331 iPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 331 IPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred CCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999887654
No 125
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.14 E-value=0.0012 Score=86.00 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=84.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHH-HHHHHHhcCCC-ccEEEeeccccccccCcc-------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARD-KAVKDFNTLPE-VSVMIMSLKAASLGLNMV------- 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~-~aI~~Fn~d~~-v~VLL~StkAGg~GLNLq------- 1345 (1431)
.+..|||-+.....-+.|...|.+.||++.+++... .+++ .+|..- +. -.|.| +|.-+|.|-+..
T Consensus 567 ~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~--~~~Ea~iia~A---G~~g~VTI-ATNmAGRGTDIkl~~~v~~ 640 (970)
T PRK12899 567 KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKN--HAQEAEIIAGA---GKLGAVTV-ATNMAGRGTDIKLDEEAVA 640 (970)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccch--hhhHHHHHHhc---CCCCcEEE-eeccccCCcccccCchHHh
Confidence 678899999999999999999999999999998873 3444 333322 33 34445 668888987754
Q ss_pred -ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1346 -AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1346 -~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
..=|||.-+.+-|...+.|..||+.|.|..-....+- |+|+.++.+
T Consensus 641 ~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~ 687 (970)
T PRK12899 641 VGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRL 687 (970)
T ss_pred cCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHH
Confidence 3468999999999999999999999999987633331 556666654
No 126
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.12 E-value=1.2e-05 Score=95.03 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=90.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC--CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS--SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~--gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
..+|+|||...-...++....|... .+.++-++|.|+..+|.+++..|.+ ..-.||+ +|+.++.||+....+.||.
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~-~~~~vl~-~TDVaARGlDip~iD~VvQ 331 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK-LSNGVLF-CTDVAARGLDIPGIDLVVQ 331 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh-ccCceEE-eehhhhccCCCCCceEEEe
Confidence 4589999998888888888887664 6789999999999999999999998 3334555 7899999999999999999
Q ss_pred EcCCCCcChHHHHHHhhhccCCCCcEEE
Q 000549 1353 LDLWWNPTTEDQAIDRAHRIGQTRPVSV 1380 (1431)
Q Consensus 1353 lDp~WNP~~e~QAIGRvhRIGQtr~V~V 1380 (1431)
+|||-+|.....|.||..|.|..-.-.|
T Consensus 332 ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 332 FDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred cCCCCChhHHHhhcchhhhccCccceEE
Confidence 9999999999999999999998765433
No 127
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.10 E-value=0.0037 Score=72.22 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=75.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC-C-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS-S-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~-g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
.+..++||..-..++..+...|++. + .+...++.. ...|.+.+++|++ +...+|| +|.....|+.+...+..++
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~-G~~~lLi-TTTILERGVTfp~vdV~Vl 379 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRD-GKITLLI-TTTILERGVTFPNVDVFVL 379 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHc-CceEEEE-EeehhhcccccccceEEEe
Confidence 5678999999999999999999553 2 222334433 3578999999998 7777777 7789999999999998888
Q ss_pred EcC--CCCcChHHHHHHhhhccC
Q 000549 1353 LDL--WWNPTTEDQAIDRAHRIG 1373 (1431)
Q Consensus 1353 lDp--~WNP~~e~QAIGRvhRIG 1373 (1431)
=.- -+..+...|--||++|-=
T Consensus 380 gaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 380 GAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred cCCcccccHHHHHHHhhhccCCC
Confidence 543 488899999999999954
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.08 E-value=0.00015 Score=93.69 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=84.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc---------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------- 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------- 1345 (1431)
.|..|||-+.....-+.|.+.|.+.||++-+++.... ++++.|-+ +....-.|-| +|.-+|.|-+..
T Consensus 448 ~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTI-ATNMAGRGTDIkLg~n~~~~~ 523 (913)
T PRK13103 448 LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTI-ATNMAGRGTDILLGGNWEVEV 523 (913)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEE-eccCCCCCCCEecCCchHHHH
Confidence 6889999999999999999999999999988888743 44443333 2212234555 668888887764
Q ss_pred ----------------------------ccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1346 ----------------------------AACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1346 ----------------------------~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
..=|||.-+.+=|-.++.|..||+.|.|..-...+|- |+|+.++.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SlED~Lmr~ 597 (913)
T PRK13103 524 AALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDSLMRI 597 (913)
T ss_pred HhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHh
Confidence 3458999999999999999999999999987644432 345555443
No 129
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.02 E-value=2.6e-05 Score=94.86 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=92.5
Q ss_pred eEEEEcccHHHHHHHHHHH-HhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1278 KAIVFSQWTKMLDLLEASL-KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1278 KvIVFSq~t~~LdlLe~~L-~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
.+|||-|...-...|...| .-.+|.+-.++|..+..+|+..+++|+. +.+.||+ .|...+.|+++..++.||+||.+
T Consensus 389 P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~IwvLi-cTdll~RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 389 PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWVLI-CTDLLARGIDFKGVNLVINYDFP 466 (593)
T ss_pred CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeEEE-ehhhhhccccccCcceEEecCCC
Confidence 5799999999999998888 6779999999999999999999999999 8999999 56999999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCc-EEEE
Q 000549 1357 WNPTTEDQAIDRAHRIGQTRP-VSVL 1381 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr~-V~Vy 1381 (1431)
=.-.....+|||.+|-|+.-. +++|
T Consensus 467 ~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 467 QSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred chhHHHHHHhhccCCCCCCcceEEEe
Confidence 888899999999999998764 4443
No 130
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.1e-05 Score=93.75 Aligned_cols=107 Identities=20% Similarity=0.320 Sum_probs=97.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
...+||++..+-++.|...|..++++...++|.|...+|+.+++.|+. +..+||| ++.-.+.|++++..+-||+||+|
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~-gssrvlI-ttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS-GSSRVLI-TTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc-CCceEEe-eccccccccchhhcceeeeeccc
Confidence 578999999999999999999999999999999999999999999998 8889998 66889999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1357 WNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
=|......|+||..|.|.+- .+..++++.
T Consensus 342 ~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 342 ARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred cchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 99999999999999999764 444556555
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.95 E-value=0.00065 Score=87.32 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=86.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccC------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAAC------ 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An------ 1348 (1431)
.+..|||.+.....-+.|...|.+.||++.+++... .+|++.|-+ +. +..--+.++|..+|.|-+..-..
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~--~e~EA~IIa-~A-G~~GaVTIATNMAGRGTDI~Lg~~V~~~G 500 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ--NAREAEIIA-KA-GQKGAITIATNMAGRGTDIKLSKEVLELG 500 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc--hhhHHHHHH-hC-CCCCeEEEecccccCCcCccCchhHHHcC
Confidence 678999999999999999999999999999999873 345544443 22 33333444668889998866433
Q ss_pred --EEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q 000549 1349 --HVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILAL 1396 (1431)
Q Consensus 1349 --~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIlel 1396 (1431)
|||..+.+=+-..+.|..||++|.|..-...+|- |+|+.++.+
T Consensus 501 GLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~ 545 (925)
T PRK12903 501 GLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRR 545 (925)
T ss_pred CcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHH
Confidence 9999999999999999999999999887644432 455555543
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0016 Score=83.79 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=70.8
Q ss_pred HHHHHHHHhC--CCcEEecCCCCCHHH--HHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC---CCcC--
Q 000549 1290 DLLEASLKDS--SIQYRRLDGTMSVFA--RDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW---WNPT-- 1360 (1431)
Q Consensus 1290 dlLe~~L~~~--gI~~~rldGsms~~q--R~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~---WNP~-- 1360 (1431)
+.|++.|++. +.+++++|+.++... -+.+++.|.+ ++..|||. |.-..-|+|+....-|.++|.+ .+|.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~-ge~dILiG-TQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN-GEADILIG-TQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC-CCCCeeec-chhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 3445555443 678888988876533 4678999998 88888885 5888899999999988887765 2333
Q ss_pred -------hHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1361 -------TEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1361 -------~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
...|.-||++|-+-.-.|.+-.+....
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 445999999998777677776666554
No 133
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.77 E-value=0.0011 Score=86.18 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=59.1
Q ss_pred CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE-----EcCC---C---CcChHHHHHHh
Q 000549 1300 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL-----LDLW---W---NPTTEDQAIDR 1368 (1431)
Q Consensus 1300 gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~-----lDp~---W---NP~~e~QAIGR 1368 (1431)
.+.|..-+.+|+..+|+..-+-|.+ +.++||+ ||+..+-|+||.+ .+||+ |||. | .|....|..||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~-g~iqvlv-statlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD-GHIQVLV-STATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc-CceeEEE-eehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 4567788999999999999999987 8999998 8899999999985 55555 5553 4 45677899999
Q ss_pred hhccCC
Q 000549 1369 AHRIGQ 1374 (1431)
Q Consensus 1369 vhRIGQ 1374 (1431)
++|.+-
T Consensus 684 agrp~~ 689 (1674)
T KOG0951|consen 684 AGRPQY 689 (1674)
T ss_pred cCCCcc
Confidence 999863
No 134
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.65 E-value=0.0011 Score=84.37 Aligned_cols=81 Identities=22% Similarity=0.234 Sum_probs=56.7
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE----c----CCCCcChHHHHHHhhhccCCCC
Q 000549 1305 RLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL----D----LWWNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1305 rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l----D----p~WNP~~e~QAIGRvhRIGQtr 1376 (1431)
+-+|+.=+--++-+---|+. +=++||+ .|...+-|+|+.+-+.|+-- | -..+|.-..|.-|||+|-|=-.
T Consensus 635 VHH~GlLPivKE~VE~LFqr-GlVKVLF-ATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~ 712 (1248)
T KOG0947|consen 635 VHHGGLLPIVKEVVELLFQR-GLVKVLF-ATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDE 712 (1248)
T ss_pred hhcccchHHHHHHHHHHHhc-CceEEEe-ehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCc
Confidence 45667666555555566776 7888888 56999999999976665431 1 1358999999999999999765
Q ss_pred cEEEEEEEeCCC
Q 000549 1377 PVSVLRLTVKNT 1388 (1431)
Q Consensus 1377 ~V~VyrLi~kdT 1388 (1431)
.=+|. ++.++.
T Consensus 713 tGTVi-i~~~~~ 723 (1248)
T KOG0947|consen 713 TGTVI-IMCKDS 723 (1248)
T ss_pred CceEE-EEecCC
Confidence 54443 344443
No 135
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.002 Score=83.13 Aligned_cols=75 Identities=17% Similarity=0.301 Sum_probs=62.8
Q ss_pred CCeEEEEccc---HHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccc---cccCcc-ccC
Q 000549 1276 GEKAIVFSQW---TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS---LGLNMV-AAC 1348 (1431)
Q Consensus 1276 ~~KvIVFSq~---t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg---~GLNLq-~An 1348 (1431)
|.-.|||.+- ...++.|..+|+.+|+....+... +.+.++.|.. +++.||+....--| .||+|. ...
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~-GeidvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE-GEVDVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc-CceeEEEEecccccceeecCCchhhee
Confidence 4567999998 888999999999999998887653 3788999998 99999996544333 599997 789
Q ss_pred EEEEEcCC
Q 000549 1349 HVLLLDLW 1356 (1431)
Q Consensus 1349 ~VI~lDp~ 1356 (1431)
++||+..|
T Consensus 409 YaIF~GvP 416 (1187)
T COG1110 409 YAVFYGVP 416 (1187)
T ss_pred EEEEecCC
Confidence 99999988
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.45 E-value=0.018 Score=73.96 Aligned_cols=69 Identities=25% Similarity=0.242 Sum_probs=59.5
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc-CCCCcChHHHHHHhhhccCCCC
Q 000549 1306 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD-LWWNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1306 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD-p~WNP~~e~QAIGRvhRIGQtr 1376 (1431)
-+.+++...|..+---|+. +...||+ +|...++|+|+.+-..|+.-| +..||....|+-|||+|-|=..
T Consensus 968 HHaglNr~yR~~VEvLFR~-g~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~ 1037 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQ-GHLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDT 1037 (1330)
T ss_pred cccccchHHHHHHHHHhhc-CceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccccc
Confidence 4678899999998888998 8899988 669999999999887777776 5689999999999999988443
No 137
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.44 E-value=0.00028 Score=82.52 Aligned_cols=96 Identities=22% Similarity=0.245 Sum_probs=85.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCC---CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSS---IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVL 1351 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~g---I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI 1351 (1431)
.-.|.|||+.-..-.|-|++++.+.| +..+.++|...+.+|.+-++.|+. .+++.|| .++.++.||+++..-.||
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvkfli-ctdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVKFLI-CTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeEEEE-EehhhhccccccCCceEE
Confidence 56899999999999999999998874 467889999999999999999998 7788777 569999999999999999
Q ss_pred EEcCCCCcChHHHHHHhhhcc
Q 000549 1352 LLDLWWNPTTEDQAIDRAHRI 1372 (1431)
Q Consensus 1352 ~lDp~WNP~~e~QAIGRvhRI 1372 (1431)
++.++-.......||||+.|-
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999998888888888887763
No 138
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=97.40 E-value=0.00019 Score=86.49 Aligned_cols=130 Identities=20% Similarity=0.236 Sum_probs=104.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
-+.+.|||++...-+..|.-+|...+|+...++..|-+++|-+.+++|.+.+ --||| .|++++.||+.+...|||+|.
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~-~~VLi-aTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP-SGVLI-ATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC-CeEEE-eehhhhccCCCCCcceEEEee
Confidence 3568999999999999999999999999999999999999999999999843 33555 669999999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEEEEEe----------------CC----CHHHHHHHHHHHHHHHHHHH
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTV----------------KN----TVEDRILALQQKKREMVASA 1407 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~----------------kd----TIEErIlelq~kK~~l~~~~ 1407 (1431)
.|-....+..|-||.-|-+. +-|.|.-.-. .+ -|+++|+.....+-.++..+
T Consensus 540 VPrtseiYVHRSGRTARA~~-~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei 611 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANS-EGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREI 611 (731)
T ss_pred cCCccceeEecccccccccC-CCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999763 2244432110 01 24777777766666665444
No 139
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0001 Score=80.89 Aligned_cols=56 Identities=38% Similarity=0.872 Sum_probs=47.5
Q ss_pred hhccccccCCCCCccchhcccCcccchhhhhhhcccCCC--CCCCccccccccccchhhh
Q 000549 1109 ASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDN--QCPTRNCKIRLSLSSVFSK 1166 (1431)
Q Consensus 1109 ~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~--~Cp~~~C~~~l~~~~~~s~ 1166 (1431)
.....|.||.|..++||+|.|||+||=-||-.|+....+ .|| +|+..+..+.++..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cP--VCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECP--VCKAEVSIDTVVPL 102 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCC--ccccccccceEEee
Confidence 456789999999999999999999999999999876544 566 69999988877653
No 140
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.23 E-value=0.00061 Score=89.79 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=97.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
+.+-.||||....+.+.+...|+..|+....|+++|+..+|+.+-++|.. ++++|++++ =|.|-|+|-...--||+|.
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~-~~~~VivAT-VAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS-DKIRVIVAT-VAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc-CCCeEEEEE-eeccCCCCCCceeEEEECC
Confidence 67889999999999999999999999999999999999999999999999 668888865 7899999999999999999
Q ss_pred CCCCcChHHHHHHhhhccCCCCcEEEE
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVL 1381 (1431)
Q Consensus 1355 p~WNP~~e~QAIGRvhRIGQtr~V~Vy 1381 (1431)
++=+-.-.-|.+||++|-|+......|
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C~l~ 588 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSCVLL 588 (941)
T ss_pred CchhHHHHHHhccccCcCCCcceeEEe
Confidence 999999999999999999998874443
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.22 E-value=0.0011 Score=80.50 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=83.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCc-EEecCCCCCHHHHHHHHHHHhcC-CCccEEEeeccccccccCccccCEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d-~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
+|+-|+-||.- -+-.+...++++|.. .++|+|+.+++-|.+-...||+. +++.|||+| +|.|-||||- -.||||
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEE
Confidence 78899999874 334456667777766 99999999999999999999984 679999977 9999999995 578999
Q ss_pred EcCC-CC--------cChHHHHHHhhhccCCCCc-EEEEEEEe
Q 000549 1353 LDLW-WN--------PTTEDQAIDRAHRIGQTRP-VSVLRLTV 1385 (1431)
Q Consensus 1353 lDp~-WN--------P~~e~QAIGRvhRIGQtr~-V~VyrLi~ 1385 (1431)
+++. +| -....|--||++|.|.+-+ =.|..|..
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 9876 22 2345599999999998765 44444443
No 142
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.21 E-value=0.0005 Score=81.16 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=94.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeec--------------------
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSL-------------------- 1335 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~St-------------------- 1335 (1431)
..|+|||.+-....--|.-.|+.-||+.+.++|.++..-|.-+|++||. +-+.++|+|-
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~YdivIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDIVIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeEEEEccCccchhhhhccccccccccC
Confidence 3699999999999999999999999999999999999999999999998 7788888764
Q ss_pred ----c-c---------cccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCC
Q 000549 1336 ----K-A---------ASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKN 1387 (1431)
Q Consensus 1336 ----k-A---------Gg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kd 1387 (1431)
+ + .+.|++++..+.||++|.|-++...+.|+||..|-|.+-. +.-|+...
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt--alSfv~P~ 410 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT--ALSFVSPK 410 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCc--eEEEecch
Confidence 0 1 2469999999999999999999999999999999776654 33445443
No 143
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.17 E-value=0.0028 Score=83.27 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=30.7
Q ss_pred EEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCC
Q 000549 907 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQ 944 (1431)
Q Consensus 907 rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIq 944 (1431)
.||+||+|++... .+.++++..|+..+.+..|||--.
T Consensus 204 ivIiDEPh~~~~~-~k~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 204 VVIIDEPHRFPRD-NKFYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred EEEEECCCCCCcc-hHHHHHHHhcCcccEEEEeeecCC
Confidence 6999999999652 356788999999999999999643
No 144
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.16 E-value=0.11 Score=68.61 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=84.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--------c
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--------A 1346 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--------~ 1346 (1431)
.|..|||-+.....-++|.+.|...||++-+++...- ++++.|=+=.. ..-.|-| +|.-+|.|-+.. .
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~AG-~~GaVTI-ATNMAGRGTDIkLg~~V~e~G 702 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAG-QPGTVTI-ATNMAGRGTDIKLSPEVKAAG 702 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhcC-CCCcEEE-eccCcCCCcCcccchhhHHcC
Confidence 7899999999999999999999999999999988743 44443333222 1234555 557778887654 4
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000549 1347 ACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1395 (1431)
Q Consensus 1347 An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIle 1395 (1431)
.=|||.-+.+-+...+.|..||++|.|..-....|- |+|+.++.
T Consensus 703 GL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SLEDdLmr 746 (1112)
T PRK12901 703 GLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV-----SLEDNLMR 746 (1112)
T ss_pred CCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE-----EcccHHHH
Confidence 579999999999999999999999999877644332 45555544
No 145
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.13 E-value=0.00022 Score=76.97 Aligned_cols=52 Identities=38% Similarity=0.800 Sum_probs=42.3
Q ss_pred ccccccCCCCCccchhcccCcccchhhhhhhccc---------------CCCCCCCccccccccccchh
Q 000549 1111 LAICGICNDPPEDAVVSICGHVFCNQCICERLTA---------------DDNQCPTRNCKIRLSLSSVF 1164 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~---------------~~~~Cp~~~C~~~l~~~~~~ 1164 (1431)
...|+||.+...+++++.|||.||..||..|+.. ....|| .|+..+....++
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CP--vCR~~Is~~~Lv 84 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCP--VCKSDVSEATLV 84 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCC--CCCCcCChhcEE
Confidence 4679999999999999999999999999998642 234677 599888765554
No 146
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.12 E-value=0.0034 Score=65.38 Aligned_cols=42 Identities=17% Similarity=0.240 Sum_probs=24.0
Q ss_pred cccCccEEEEcCccccCChhhHHHHHH-Hhc-cc--CcEEEEEcccC
Q 000549 901 AKVGWFRVVLDEAQSIKNHRTQVARAC-WGL-RA--KRRWCLSGTPI 943 (1431)
Q Consensus 901 ~~i~W~rVILDEAH~IKN~~T~~skal-~~L-~a--k~RwlLTGTPI 943 (1431)
...+|++||+||||.. ++.+-..+-. ..+ .. ...+++||||-
T Consensus 92 ~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 92 RLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp CTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred cccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 3457999999999974 4444443332 222 22 25799999995
No 147
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.96 E-value=0.00034 Score=56.67 Aligned_cols=37 Identities=46% Similarity=1.051 Sum_probs=31.2
Q ss_pred cccCCCCCccc-hhcccCcccchhhhhhhcccCCCCCCC
Q 000549 1114 CGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPT 1151 (1431)
Q Consensus 1114 C~iC~d~~e~~-vit~CgH~fC~~Ci~~~l~~~~~~Cp~ 1151 (1431)
|++|.+...++ ++++|||.||.+|+..++.. ...||.
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~ 38 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPV 38 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcC
Confidence 78999999999 68999999999999999888 678873
No 148
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00036 Score=73.52 Aligned_cols=50 Identities=40% Similarity=0.920 Sum_probs=37.5
Q ss_pred hccccccCCCCCcc--chhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000549 1110 SLAICGICNDPPED--AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1162 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~--~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1162 (1431)
....|++|++.... ++-+.|||+||.+||...+.. ..+||. |+.++....
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~--C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPT--CRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCC--cccccchhh
Confidence 34779999998765 456999999999999988754 457886 655554433
No 149
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=96.90 E-value=0.036 Score=69.63 Aligned_cols=83 Identities=24% Similarity=0.247 Sum_probs=54.4
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE----c----CCCCcChHHHHHHhhhccCCCCc
Q 000549 1306 LDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL----D----LWWNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1306 ldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l----D----p~WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
-+++.=+--++-+---|++ +=++||.+ |...+-|||+.+-..|+-- | -|-...-..|.-||++|-|--..
T Consensus 452 HHsGLLPIlKE~IEILFqE-GLvKvLFA-TETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~Ddr 529 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQE-GLVKVLFA-TETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDR 529 (1041)
T ss_pred ccccchHHHHHHHHHHHhc-cHHHHHHh-hhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCC
Confidence 3455545555555556776 77888884 5999999999966555442 2 23366778899999999997554
Q ss_pred EEEEEEEeCCCHHH
Q 000549 1378 VSVLRLTVKNTVED 1391 (1431)
Q Consensus 1378 V~VyrLi~kdTIEE 1391 (1431)
=.|. ++....+|.
T Consensus 530 GivI-lmiDekm~~ 542 (1041)
T KOG0948|consen 530 GIVI-LMIDEKMEP 542 (1041)
T ss_pred ceEE-EEecCcCCH
Confidence 3332 344444444
No 150
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00037 Score=87.73 Aligned_cols=49 Identities=37% Similarity=0.958 Sum_probs=43.3
Q ss_pred ccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccch
Q 000549 1113 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1163 (1431)
Q Consensus 1113 ~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~ 1163 (1431)
.|+.|+..+-+.+++.|||+||.+|+...+....-+||. |...|.+..+
T Consensus 645 kCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~--Cn~aFganDv 693 (698)
T KOG0978|consen 645 KCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPK--CNAAFGANDV 693 (698)
T ss_pred eCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCC--CCCCCCcccc
Confidence 499999999999999999999999999999999999996 7776665543
No 151
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00045 Score=77.95 Aligned_cols=49 Identities=31% Similarity=0.798 Sum_probs=41.9
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccch
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1163 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~ 1163 (1431)
..|.+|.+...+|-.|+|||+||-.||.+|...... || .|+..+..+.+
T Consensus 240 ~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e-CP--lCR~~~~pskv 288 (293)
T KOG0317|consen 240 RKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE-CP--LCREKFQPSKV 288 (293)
T ss_pred CceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC-CC--cccccCCCcce
Confidence 569999999999999999999999999999876554 88 49888776554
No 152
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.83 E-value=0.00053 Score=61.22 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=39.2
Q ss_pred ccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000549 1113 ICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1162 (1431)
Q Consensus 1113 ~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1162 (1431)
.|++|.+...+|++++|||+||..||.+++.. ...||. |+..+....
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~--~~~~~~~~~ 49 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPV--TGQPLTHED 49 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCC--CcCCCChhh
Confidence 69999999999999999999999999999976 567885 555554433
No 153
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.80 E-value=0.0058 Score=82.11 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHH-hcCCCccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCC-Cc-EEEEEEE
Q 000549 1315 RDKAVKDF-NTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT-RP-VSVLRLT 1384 (1431)
Q Consensus 1315 R~~aI~~F-n~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQt-r~-V~VyrLi 1384 (1431)
+.....+| ..+..+++||+. .-.=+|.+-+..+++++ |=+--.....||+.|+.|+=-. ++ -.|+.|+
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 34444444 555677777776 44447777777777665 4446667778888888886332 33 4444443
No 154
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.76 E-value=0.00074 Score=55.76 Aligned_cols=33 Identities=36% Similarity=0.765 Sum_probs=28.3
Q ss_pred cccCCCCCccchhcccCcccchhhhhhhcccCC
Q 000549 1114 CGICNDPPEDAVVSICGHVFCNQCICERLTADD 1146 (1431)
Q Consensus 1114 C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~ 1146 (1431)
|++|.+...+|+...|||.||..||..++....
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~ 33 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS 33 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC
Confidence 899999999999999999999999999986643
No 155
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.75 E-value=0.14 Score=66.86 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=47.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCH-HHHHHHHHHHhcCCCccEEEeeccccccccC
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSV-FARDKAVKDFNTLPEVSVMIMSLKAASLGLN 1343 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~-~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLN 1343 (1431)
.+..|||-+.....-+.|...|.+.||++.+++..... ++-.++|.+ .. ..-.|-| +|.-+|.|-+
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~-AG-~~G~VTI-ATNMAGRGTD 489 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ-AG-RKGSITI-ATNMAGRGTD 489 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh-cC-CCCcEEE-eccccCCCcC
Confidence 68899999999999999999999999999999987422 333344444 21 1233444 5566677633
No 156
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.49 E-value=0.0048 Score=72.89 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=90.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
.+..|||..-....+++...|+..|+....++|++.+..|..-+.+|+. ....+|+ .++.++.|++..--+.||+||.
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~-~k~~~lv-vTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRG-RKTSILV-VTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccC-CccceEE-EehhhhccCCCccccccccccC
Confidence 3578999999999999999999999999999999999999999999997 5555555 6699999999999999999999
Q ss_pred CCCcChHHHHHHhhhccCCCC
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr 1376 (1431)
+=.+.....|+||+.|-|.+-
T Consensus 339 p~~~klFvhRVgr~aragrtg 359 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTG 359 (529)
T ss_pred CCCCceEEEEecchhhccccc
Confidence 999999999999999999664
No 157
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.32 E-value=0.0019 Score=52.65 Aligned_cols=37 Identities=43% Similarity=1.048 Sum_probs=32.8
Q ss_pred cccCCCCCccch-hcccCcccchhhhhhhcc-cCCCCCC
Q 000549 1114 CGICNDPPEDAV-VSICGHVFCNQCICERLT-ADDNQCP 1150 (1431)
Q Consensus 1114 C~iC~d~~e~~v-it~CgH~fC~~Ci~~~l~-~~~~~Cp 1150 (1431)
|++|.+....++ +++|+|.||..|+..++. .....||
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP 39 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCP 39 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCC
Confidence 789999999988 899999999999999998 5556677
No 158
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0023 Score=77.39 Aligned_cols=53 Identities=30% Similarity=0.758 Sum_probs=41.7
Q ss_pred ccccccCCCCCccchhcccCcccchhhhhhhcccC--CCCCCCccccccccccch
Q 000549 1111 LAICGICNDPPEDAVVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRLSLSSV 1163 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~--~~~Cp~~~C~~~l~~~~~ 1163 (1431)
...|+||.+++.-|+.|.|||+||..||..++... ..-|-++-|...+.+..+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 57899999999999999999999999999988554 222334468877766443
No 159
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=96.02 E-value=0.014 Score=69.03 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=92.6
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCC
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1356 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~ 1356 (1431)
.--||||.-+...+.++..|...||+..-|+.+....+|..+-++|-+ +++.|+..+ -+.|-|++=.....||+.+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~-~~~PvI~AT-~SFGMGVDKp~VRFViHW~~~ 333 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN-NEIPVIAAT-VSFGMGVDKPDVRFVIHWSPS 333 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc-CCCCEEEEE-eccccccCCcceeEEEecCch
Confidence 345899999999999999999999999999999999999999999998 778888754 788999999999999999999
Q ss_pred CCcChHHHHHHhhhccCCCCcEEEE
Q 000549 1357 WNPTTEDQAIDRAHRIGQTRPVSVL 1381 (1431)
Q Consensus 1357 WNP~~e~QAIGRvhRIGQtr~V~Vy 1381 (1431)
=|-+..-|--||++|-|-..=.+.|
T Consensus 334 qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hhhHHHHHhccccccCCCccceeee
Confidence 9999999999999999976545554
No 160
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.96 E-value=0.0024 Score=52.97 Aligned_cols=36 Identities=36% Similarity=0.923 Sum_probs=20.9
Q ss_pred cccCCCCCcc----chhcccCcccchhhhhhhcccC---CCCCC
Q 000549 1114 CGICNDPPED----AVVSICGHVFCNQCICERLTAD---DNQCP 1150 (1431)
Q Consensus 1114 C~iC~d~~e~----~vit~CgH~fC~~Ci~~~l~~~---~~~Cp 1150 (1431)
|++|.+ ..+ |++.+|||+||..|+....... ..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 788887 544 7888899999999999987643 34555
No 161
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.91 E-value=0.0047 Score=52.83 Aligned_cols=44 Identities=36% Similarity=0.961 Sum_probs=36.6
Q ss_pred cccccCCCCCccchhcccCcc-cchhhhhhhcccCCCCCCCccccccc
Q 000549 1112 AICGICNDPPEDAVVSICGHV-FCNQCICERLTADDNQCPTRNCKIRL 1158 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~-fC~~Ci~~~l~~~~~~Cp~~~C~~~l 1158 (1431)
..|.+|.+.+.+.++.+|||. ||..|+..++. ....||. |+..+
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~--Cr~~i 47 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPI--CRQPI 47 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTT--TTBB-
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCc--CChhh
Confidence 469999999999999999999 99999999987 6667884 77655
No 162
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.83 E-value=0.17 Score=56.01 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=27.7
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCC-cEEEcCCCCChHHHHHHHHHHc
Q 000549 665 LLRHQRIALSWMVQKETSSLHCSG-GILADDQGLGKTISTIALILKE 710 (1431)
Q Consensus 665 L~phQk~al~wMl~rE~~~~~~~G-GILADEMGLGKTlqaIALI~~~ 710 (1431)
|-+.|+.|+..++.. .+ .++.-..|.|||-+..+++...
T Consensus 2 ln~~Q~~Ai~~~~~~-------~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 2 LNESQREAIQSALSS-------NGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp --HHHHHHHHHHCTS-------SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC-------CCCEEEECCCCCChHHHHHHHHHHh
Confidence 678999999888743 33 6777888999997777776553
No 163
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.77 E-value=0.0047 Score=74.43 Aligned_cols=47 Identities=32% Similarity=0.709 Sum_probs=39.3
Q ss_pred ccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccc
Q 000549 1111 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1160 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1160 (1431)
...|++|.+...+|++++|+|.||..||..++... ..|| .|+..+..
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP--~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCP--LCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCC--CCCCcccc
Confidence 35899999999999999999999999999988663 4687 48776544
No 164
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.74 E-value=0.0081 Score=67.80 Aligned_cols=46 Identities=35% Similarity=0.770 Sum_probs=36.0
Q ss_pred ccccccCCCCCcc--------chhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000549 1111 LAICGICNDPPED--------AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~--------~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
...|++|.+...+ +++++|+|.||..||..|+.. ...||. |+..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPl--CR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPV--CRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCC--CCCEee
Confidence 4689999997443 357899999999999998864 567985 887654
No 165
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.053 Score=72.03 Aligned_cols=168 Identities=17% Similarity=0.148 Sum_probs=103.9
Q ss_pred CCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccc
Q 000549 657 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 736 (1431)
Q Consensus 657 P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~ 736 (1431)
|..-..++|-++|++|++-+-+- .+.++|--.|.|||+.+-..|......
T Consensus 112 ~~~~~~F~LD~fQ~~a~~~Ler~-------esVlV~ApTssGKTvVaeyAi~~al~~----------------------- 161 (1041)
T COG4581 112 PAREYPFELDPFQQEAIAILERG-------ESVLVCAPTSSGKTVVAEYAIALALRD----------------------- 161 (1041)
T ss_pred HHHhCCCCcCHHHHHHHHHHhCC-------CcEEEEccCCCCcchHHHHHHHHHHHc-----------------------
Confidence 33345678999999999988743 457999999999999986555432100
Q ss_pred cccccccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeCh-hhHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 000549 737 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRT 815 (1431)
Q Consensus 737 ~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~ 815 (1431)
...+.-..|. +|..|=-.++...+..- .-.+-+++|....
T Consensus 162 --------------------------------------~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TGDv~I 202 (1041)
T COG4581 162 --------------------------------------GQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTGDVSI 202 (1041)
T ss_pred --------------------------------------CCceEeccchhhhhhhHHHHHHHHhhhh-hhhccceecceee
Confidence 0125667775 46678778887666421 1234566665443
Q ss_pred CCcccccCCCEEEEechhhhccCCCCCCCCchhHHHHhhhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCccccc
Q 000549 816 KDPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDI 895 (1431)
Q Consensus 816 k~~~~L~~~DVVITTY~~L~~e~~k~~~~~~~de~~k~~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~ 895 (1431)
. ..+.+++.|-++|++-+-. ..
T Consensus 203 N-----~~A~clvMTTEILRnMlyr----------------g~------------------------------------- 224 (1041)
T COG4581 203 N-----PDAPCLVMTTEILRNMLYR----------------GS------------------------------------- 224 (1041)
T ss_pred C-----CCCceEEeeHHHHHHHhcc----------------Cc-------------------------------------
Confidence 2 3567888888999864311 00
Q ss_pred ccCCccccCccEEEEcCccccCChh-hHHHHHH-Hhc-ccCcEEEEEcccCCCChHHHHhhhhcc
Q 000549 896 VAGPLAKVGWFRVVLDEAQSIKNHR-TQVARAC-WGL-RAKRRWCLSGTPIQNAIDDLYSYFRFL 957 (1431)
Q Consensus 896 ~~~pL~~i~W~rVILDEAH~IKN~~-T~~skal-~~L-~ak~RwlLTGTPIqN~l~DLyslL~FL 957 (1431)
..+..+ .+||+||.|+|.... .-.+.-+ ..+ +.-+-++||||= . +..|+...+.-+
T Consensus 225 --~~~~~i--~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv-~-N~~EF~~Wi~~~ 283 (1041)
T COG4581 225 --ESLRDI--EWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV-P-NAEEFAEWIQRV 283 (1041)
T ss_pred --cccccc--ceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC-C-CHHHHHHHHHhc
Confidence 112333 359999999998754 3334433 333 344789999993 2 445555444433
No 166
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0051 Score=68.84 Aligned_cols=49 Identities=29% Similarity=0.705 Sum_probs=39.8
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcccCCC-CCCCccccccccccc
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDN-QCPTRNCKIRLSLSS 1162 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~-~Cp~~~C~~~l~~~~ 1162 (1431)
..|.+|.+.++.|..++|||+||.-||...++.... .||. |+....+..
T Consensus 216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~Cpl--CRak~~pk~ 265 (271)
T COG5574 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPL--CRAKVYPKK 265 (271)
T ss_pred cceeeeecccCCcccccccchhhHHHHHHHHHhhccccCch--hhhhccchh
Confidence 569999999999999999999999999996655544 4984 776655443
No 167
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=95.53 E-value=0.0072 Score=47.44 Aligned_cols=37 Identities=46% Similarity=1.053 Sum_probs=31.8
Q ss_pred cccCCCCCccchhcccCcccchhhhhhhcccCCCCCC
Q 000549 1114 CGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1150 (1431)
Q Consensus 1114 C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp 1150 (1431)
|++|.+....+++++|+|.||..|+..++......||
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP 37 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCP 37 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCC
Confidence 7889988888889999999999999998875556677
No 168
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.03 E-value=0.14 Score=68.88 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----CCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcccc--C
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAA--C 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~A--n 1348 (1431)
.+.++|||.....+++.+...|.. .++.... .... ..|.+++++|+. ++..||| .+....+|+++..- .
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~--q~~~-~~r~~ll~~F~~-~~~~iLl-gt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLA--QGIN-GSRAKIKKRFNN-GEKAILL-GTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEe--cCCC-ccHHHHHHHHHh-CCCeEEE-EcceeecccccCCCceE
Confidence 456899999999999999999875 3444332 2222 479999999997 5566777 55999999999844 4
Q ss_pred EEEEEcCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEE
Q 000549 1349 HVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVS 1379 (1431)
Q Consensus 1349 ~VI~lDp~W-NP~-----------------------------~e~QAIGRvhRIGQtr~V~ 1379 (1431)
.||+.-+|+ +|. ...||+||+.|-.+.+-|.
T Consensus 748 ~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 748 CLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 667777665 332 2349999999987777653
No 169
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=94.82 E-value=0.014 Score=48.44 Aligned_cols=38 Identities=45% Similarity=0.846 Sum_probs=29.9
Q ss_pred ccccCCCCC---ccchhcccCcccchhhhhhhcccCCCCCCC
Q 000549 1113 ICGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 1151 (1431)
Q Consensus 1113 ~C~iC~d~~---e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~ 1151 (1431)
.|+||.+.. +..+.++|+|+||..|+.+++... ..||.
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~ 42 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPV 42 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCc
Confidence 589999875 345667899999999999999774 57884
No 170
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=94.78 E-value=0.094 Score=65.35 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=59.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccccc
Q 000549 664 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLD 743 (1431)
Q Consensus 664 ~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 743 (1431)
.|-..|..||...+++-- .||--..|.|||++.-+++.. ..
T Consensus 410 kLN~SQ~~AV~~VL~rpl-------sLIQGPPGTGKTvtsa~IVyh-l~------------------------------- 450 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRPL-------SLIQGPPGTGKTVTSATIVYH-LA------------------------------- 450 (935)
T ss_pred hhchHHHHHHHHHHcCCc-------eeeecCCCCCceehhHHHHHH-HH-------------------------------
Confidence 367799999999997643 477778899999988555432 10
Q ss_pred ccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhh-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 000549 744 LVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSV-LRQWAEELRNKVTSKGSLSVLVYHGSSRTK 816 (1431)
Q Consensus 744 ~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SL-L~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k 816 (1431)
.+..+++||++|.++ +.|-++-|++- .|+|+..-...|..
T Consensus 451 ----------------------------~~~~~~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~aksRE~ 491 (935)
T KOG1802|consen 451 ----------------------------RQHAGPVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCAKSRED 491 (935)
T ss_pred ----------------------------HhcCCceEEEcccchhHHHHHHHHHhc-----CceEeeeehhhhhh
Confidence 012367999999985 89999999753 48888877666543
No 171
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=94.61 E-value=0.02 Score=46.65 Aligned_cols=42 Identities=40% Similarity=0.963 Sum_probs=32.4
Q ss_pred ccccCCCCCccch-hcccCcccchhhhhhhcccCCCCCCCccccc
Q 000549 1113 ICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPTRNCKI 1156 (1431)
Q Consensus 1113 ~C~iC~d~~e~~v-it~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~ 1156 (1431)
.|.+|.+....++ +.+|+|.||..|+..++......||. |+.
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~--C~~ 43 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPL--CRT 43 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCC--CCC
Confidence 3889998875554 45599999999999998876667874 543
No 172
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=94.49 E-value=0.018 Score=53.44 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=36.4
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccc
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1160 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1160 (1431)
..|++|.+.+.+||+++|||.|++.||..++......||. |+..+..
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~--t~~~l~~ 51 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPF--TRQPLSE 51 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TT--T-SB-SG
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCC--CCCcCCc
Confidence 5699999999999999999999999999999987888885 3444433
No 173
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.35 E-value=0.28 Score=63.22 Aligned_cols=81 Identities=10% Similarity=0.134 Sum_probs=54.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC-CCcEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCc------
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNM------ 1344 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~StkAGg~GLNL------ 1344 (1431)
.|.-.|.|+.+. .+..+...|+.. .++ +.+.|..+ .|..++++|+.. +.-.||+ .+.+..+|+++
T Consensus 470 ~G~~lvLfTS~~-~~~~~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~-gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 470 QGGTLVLTTAFS-HISAIGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLI-AAGGAWTGIDLTHKPVS 544 (636)
T ss_pred CCCEEEEechHH-HHHHHHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEE-eCCccccccccCCccCC
Confidence 455555666655 456666667543 223 45556542 468899999984 3345666 66899999999
Q ss_pred ----cccCEEEEEcCCCCcC
Q 000549 1345 ----VAACHVLLLDLWWNPT 1360 (1431)
Q Consensus 1345 ----q~An~VI~lDp~WNP~ 1360 (1431)
...+.|||.-+|+-|.
T Consensus 545 p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CCCCCcccEEEEEeCCCCcC
Confidence 3578999988888764
No 174
>PHA02926 zinc finger-like protein; Provisional
Probab=94.33 E-value=0.022 Score=62.47 Aligned_cols=47 Identities=30% Similarity=0.786 Sum_probs=35.5
Q ss_pred ccccccCCCCC------c---cchhcccCcccchhhhhhhcccC-----CCCCCCcccccccc
Q 000549 1111 LAICGICNDPP------E---DAVVSICGHVFCNQCICERLTAD-----DNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1111 ~~~C~iC~d~~------e---~~vit~CgH~fC~~Ci~~~l~~~-----~~~Cp~~~C~~~l~ 1159 (1431)
...|++|.+.. . ..++..|+|.||..||..|.... ...||. |+..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi--CR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPI--CRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCC--Ccceee
Confidence 47799999863 1 25788999999999999998643 235884 887653
No 175
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=94.18 E-value=0.028 Score=46.85 Aligned_cols=37 Identities=30% Similarity=0.891 Sum_probs=29.7
Q ss_pred cccCCCCC---ccchhcccCcccchhhhhhhcccCCCCCCC
Q 000549 1114 CGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPT 1151 (1431)
Q Consensus 1114 C~iC~d~~---e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~ 1151 (1431)
|.+|.+.. ..++++.|||+||..|+.... .....||.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~ 41 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPI 41 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcC
Confidence 77887765 346899999999999999988 55667874
No 176
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.04 E-value=0.034 Score=64.62 Aligned_cols=49 Identities=27% Similarity=0.738 Sum_probs=37.7
Q ss_pred cccccCCCC----Ccc-chhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000549 1112 AICGICNDP----PED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1162 (1431)
Q Consensus 1112 ~~C~iC~d~----~e~-~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1162 (1431)
..|++|... +.. ..+..|||.||..|+...+......|| .|...+....
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP--~C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCP--ECDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCC--CCCCccchhh
Confidence 469999873 221 244589999999999999877777888 6988877654
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.91 E-value=0.15 Score=56.82 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=22.7
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCChH
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAID 948 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l~ 948 (1431)
.+..|||||||++.. ......+.++....++.++|=|.|....
T Consensus 119 ~~~~iIvDEaQN~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTP--EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -SEEEEE-SGGG--H--HHHHHHHTTB-TT-EEEEEE--------
T ss_pred cceEEEEecccCCCH--HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 457899999999854 3444556777888999999999876543
No 178
>PRK10536 hypothetical protein; Provisional
Probab=93.59 E-value=0.36 Score=55.49 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=32.5
Q ss_pred cEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCCh
Q 000549 906 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAI 947 (1431)
Q Consensus 906 ~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~l 947 (1431)
.+|||||||++.- .+....+.++....+++++|-|-|-.+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 5799999999964 455567788889999999999977653
No 179
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=93.51 E-value=0.034 Score=49.13 Aligned_cols=45 Identities=33% Similarity=0.667 Sum_probs=31.9
Q ss_pred ccccccCCCCCccchhc-ccCcccchhhhhhhc-ccCCCCCCCcccc
Q 000549 1111 LAICGICNDPPEDAVVS-ICGHVFCNQCICERL-TADDNQCPTRNCK 1155 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~vit-~CgH~fC~~Ci~~~l-~~~~~~Cp~~~C~ 1155 (1431)
...|++...+..+||.+ .|+|+|..+.|.+++ .....+||...|.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC~ 57 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGCN 57 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-S
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCCC
Confidence 36799999999999986 899999999999999 3455689988874
No 180
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=93.39 E-value=0.022 Score=65.32 Aligned_cols=45 Identities=36% Similarity=0.835 Sum_probs=36.9
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
-.|.||.+-..-|++++|+|.||.-||..++.. .+.||. |...+.
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~--C~~~~~ 68 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPT--CCVTVT 68 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCc--eecccc
Confidence 459999999999999999999999999999864 356875 655543
No 181
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=93.05 E-value=0.069 Score=47.80 Aligned_cols=43 Identities=35% Similarity=0.889 Sum_probs=22.8
Q ss_pred ccccccCCCCCccch-hcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000549 1111 LAICGICNDPPEDAV-VSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1158 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~v-it~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l 1158 (1431)
+-.|++|.+....|| ++.|.|+||..||...+... || +|..+.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~---CP--vC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSE---CP--VCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB----S--SS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCC---CC--CcCChH
Confidence 346999999999997 68999999999998877643 66 365544
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=92.80 E-value=0.28 Score=52.84 Aligned_cols=98 Identities=22% Similarity=0.275 Sum_probs=63.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC----CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeecc--ccccccCcc--c
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS----SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLK--AASLGLNMV--A 1346 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~----gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~Stk--AGg~GLNLq--~ 1346 (1431)
.+.++|||...-..++.+...|+.. ++.+..- + ..++.+++++|..+ +-.||+ ++. ...+|+++. .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~-~~~il~-~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRG-EGAILL-AVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCS-SSEEEE-EETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhc-cCeEEE-EEecccEEEeecCCCch
Confidence 5689999999999999999999876 3443333 2 35789999999984 333444 555 789999998 4
Q ss_pred cCEEEEEcCCC-CcC-----------------------------hHHHHHHhhhccCCCCcE
Q 000549 1347 ACHVLLLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPV 1378 (1431)
Q Consensus 1347 An~VI~lDp~W-NP~-----------------------------~e~QAIGRvhRIGQtr~V 1378 (1431)
+..||+.-+|+ +|. ...||+||+.|-.+-+-+
T Consensus 82 ~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 82 LRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp EEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred hheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 67888888887 443 112899999996654443
No 183
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=92.72 E-value=0.24 Score=63.76 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=30.1
Q ss_pred EEEEcCccccCChhhHHHHHHHhcccCcEEEEEccc
Q 000549 907 RVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTP 942 (1431)
Q Consensus 907 rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTP 942 (1431)
.||+||-|++... .+.+.++.+|++...+=..||-
T Consensus 208 IvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 208 IVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred EEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 5999999999875 7889999999888877778874
No 184
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=92.64 E-value=0.37 Score=64.93 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 707 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI 707 (1431)
...+|+|.+.+..+.+..... +-+++--.+|.|||+..|.-+
T Consensus 244 ~~~r~~Q~~~~~~i~~~~~~~---~~~~~eA~TG~GKT~ayLlp~ 285 (850)
T TIGR01407 244 LEYRPEQLKLAELVLDQLTHS---EKSLIEAPTGTGKTLGYLLPA 285 (850)
T ss_pred CccCHHHHHHHHHHHHHhccC---CcEEEECCCCCchhHHHHHHH
Confidence 357899998777665543321 234555689999998775443
No 185
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=92.42 E-value=0.054 Score=60.97 Aligned_cols=38 Identities=34% Similarity=0.789 Sum_probs=33.1
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcccCCCCCC
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCP 1150 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp 1150 (1431)
..|.||.+...-|++|+|||.||.-||..++.... -||
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp-~CP 63 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP-FCP 63 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcCCC-CCc
Confidence 46999999999999999999999999999997654 355
No 186
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.18 E-value=15 Score=48.76 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=71.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc-cC-----
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA-AC----- 1348 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~-An----- 1348 (1431)
.+..|||-+.....-+++...|++.||+..+++..-. .|++-+-.+.- ....|-| +|.-+|.|-++.- .+
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG-~~gaVTi-ATNMAGRGTDIkLg~~~~~V~ 503 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAG-QPGAVTI-ATNMAGRGTDIKLGGNPEFVM 503 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcC-CCCcccc-ccccccCCcccccCCCHHHHH
Confidence 7899999999999999999999999999988888754 56665555553 2234455 6677888888763 33
Q ss_pred -----EEEEEcCCCCcChHHHHHHhhhccCC
Q 000549 1349 -----HVLLLDLWWNPTTEDQAIDRAHRIGQ 1374 (1431)
Q Consensus 1349 -----~VI~lDp~WNP~~e~QAIGRvhRIGQ 1374 (1431)
+||=-+-.=+-....|--||++|.|-
T Consensus 504 ~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 504 ELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred HhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 45656666555566688899999993
No 187
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.085 Score=60.29 Aligned_cols=57 Identities=25% Similarity=0.484 Sum_probs=48.6
Q ss_pred ccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccchhhhhhh
Q 000549 1111 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATL 1169 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~~s~~~l 1169 (1431)
..+|.||......|+...|+|.||..||......+...|+ .|+..+..+-++.+...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~Ca--vCR~pids~i~~~psl~ 63 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCA--VCRFPIDSTIDFEPSLK 63 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCc--eecCCCCcchhcchhhh
Confidence 4789999999999999999999999999999988888898 59988877766655433
No 188
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=91.71 E-value=0.75 Score=60.19 Aligned_cols=102 Identities=22% Similarity=0.228 Sum_probs=75.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCc-EEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQ-YRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVL 1351 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~-~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--~An~VI 1351 (1431)
.+.++|||...-.++..+...|...... .+...|.. .+.++++.|...++. -+++.+....+|+|+. ....||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 4458999999999999999999887653 44555554 456999999986554 4555668999999998 457888
Q ss_pred EEcCCC-CcC-----------------------------hHHHHHHhhhccCCCCcEEE
Q 000549 1352 LLDLWW-NPT-----------------------------TEDQAIDRAHRIGQTRPVSV 1380 (1431)
Q Consensus 1352 ~lDp~W-NP~-----------------------------~e~QAIGRvhRIGQtr~V~V 1380 (1431)
+.-.|| ||. ...||+||+.|--+-+-|.|
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 888887 343 23499999999555555544
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.34 E-value=0.84 Score=59.25 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC-------CCcEEecCCCCCHHHHHHHHHHHhc---CCC---ccEEEeeccccccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNT---LPE---VSVMIMSLKAASLG 1341 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~-------gI~~~rldGsms~~qR~~aI~~Fn~---d~~---v~VLL~StkAGg~G 1341 (1431)
-.+.+|||-..-.+++-+....... +..-+.+ .--+..+=.+++.+|.+ +++ ...+-+.-...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 3455999998888888885544432 2222222 11133455667777764 122 21233355667899
Q ss_pred cCcc--ccCEEEEEcCCCCcC
Q 000549 1342 LNMV--AACHVLLLDLWWNPT 1360 (1431)
Q Consensus 1342 LNLq--~An~VI~lDp~WNP~ 1360 (1431)
|++. .+..||+..+++=|.
T Consensus 639 lDFsD~~~RaVI~tGlPyP~~ 659 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPYPPV 659 (945)
T ss_pred CCccccCCceeEEecCCCCCC
Confidence 9997 677888888876443
No 190
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.37 E-value=1.2 Score=46.81 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCC-------cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEEEcCCC-
Q 000549 1288 MLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLLLDLWW- 1357 (1431)
Q Consensus 1288 ~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--~An~VI~lDp~W- 1357 (1431)
.++.+...++..++ ..+.+-| ....+..++++.|....+-.||+ ++...++|+++. .+..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~-~~~~~~~~~l~~f~~~~~~~iL~-~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQG-EDGKETGKLLEKYVEACENAILL-ATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeC-CChhHHHHHHHHHHHcCCCEEEE-EccceecceecCCCCeeEEEEEecCCC
Confidence 34555555555543 3344444 34456899999999754334555 556699999998 456778887665
Q ss_pred CcC
Q 000549 1358 NPT 1360 (1431)
Q Consensus 1358 NP~ 1360 (1431)
||.
T Consensus 81 ~~~ 83 (141)
T smart00492 81 YPD 83 (141)
T ss_pred CCC
Confidence 444
No 191
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=0.042 Score=63.91 Aligned_cols=46 Identities=37% Similarity=0.867 Sum_probs=38.6
Q ss_pred cccccCCCCCccchhc-ccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000549 1112 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit-~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
..|++|.+.......+ .|+|-||.+||...+....+.||. |+..+.
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecpt--cRk~l~ 90 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPT--CRKKLV 90 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCch--HHhhcc
Confidence 5799999877776654 599999999999999999999996 876653
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=89.71 E-value=4.1 Score=53.20 Aligned_cols=41 Identities=24% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
..|-+.|+.|+.+.+... .-.|+--..|.|||-++++++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~------~~~lI~GpPGTGKT~t~~~ii~~ 196 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK------DLFLIHGPPGTGKTRTLVELIRQ 196 (637)
T ss_pred CCCCHHHHHHHHHHhcCC------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999987431 12466677899999988888754
No 193
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.34 E-value=1.2 Score=60.68 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCC--cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc--cCEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSI--QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA--ACHV 1350 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI--~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~--An~V 1350 (1431)
.+.++|||.....++..+...|..... .+..+.-+++...|.+++++|+. .+-.||+ .+.+..+|+++.. ...|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~-~~~~iLl-G~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ-FDKAILL-GTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh-cCCeEEE-ecCcccCccccCCCceEEE
Confidence 455788888888888988888875422 12222222323458999999997 3345666 4588899999984 4788
Q ss_pred EEEcCCC-CcCh-----------------------------HHHHHHhhhccCCCCcEE
Q 000549 1351 LLLDLWW-NPTT-----------------------------EDQAIDRAHRIGQTRPVS 1379 (1431)
Q Consensus 1351 I~lDp~W-NP~~-----------------------------e~QAIGRvhRIGQtr~V~ 1379 (1431)
|+.-+|+ +|.. ..|++||+.|-.+.+-|.
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE
Confidence 8888777 5541 138899999987777653
No 194
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=89.15 E-value=0.5 Score=55.34 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lD 1354 (1431)
.|..-||||-...-.+.+...|+..||..-.|+..+.+.+|.-+-+.|-. +++.|++.+ -|.|-|++-.....||+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqvivat-vafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQVIVAT-VAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEEEEEE-eeecccCCCCCeeEEEecc
Confidence 56777999988889999999999999999999999999999999888887 889999955 7899999999999999999
Q ss_pred CCCCcChHHHH
Q 000549 1355 LWWNPTTEDQA 1365 (1431)
Q Consensus 1355 p~WNP~~e~QA 1365 (1431)
++-.-...-||
T Consensus 394 l~ksienyyqa 404 (695)
T KOG0353|consen 394 LPKSIENYYQA 404 (695)
T ss_pred cchhHHHHHHH
Confidence 98777777783
No 195
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=0.13 Score=44.23 Aligned_cols=48 Identities=31% Similarity=0.686 Sum_probs=40.8
Q ss_pred hhccccccCCCCCccchhcccCccc-chhhhhhhcccCCCCCCCccccccc
Q 000549 1109 ASLAICGICNDPPEDAVVSICGHVF-CNQCICERLTADDNQCPTRNCKIRL 1158 (1431)
Q Consensus 1109 ~~~~~C~iC~d~~e~~vit~CgH~f-C~~Ci~~~l~~~~~~Cp~~~C~~~l 1158 (1431)
+..++|-||.+.+.+.|+-.|||.- |.+|-.+.++.-...||. |+..+
T Consensus 5 ~~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPi--CRapi 53 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPI--CRAPI 53 (62)
T ss_pred ccccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcc--hhhHH
Confidence 3458899999999999999999975 999999998888888984 76554
No 196
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.74 E-value=0.99 Score=58.85 Aligned_cols=57 Identities=26% Similarity=0.244 Sum_probs=40.4
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc------ccccCCCEEEEechhhh
Q 000549 776 AGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP------CELAKFDVVITTYSIVS 835 (1431)
Q Consensus 776 ~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~------~~L~~~DVVITTY~~L~ 835 (1431)
+.+||++|.- +..|+.+-+++.|+ .-.+.+||..-..... ..-++..|||=|.+.+-
T Consensus 189 k~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 189 RGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred CeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 3489999985 78999999998885 3468889886433311 11245678998887663
No 197
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=88.74 E-value=2.7 Score=56.40 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=69.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1352 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--~An~VI~ 1352 (1431)
.+.+++|+.....+|..+...|....+.. ...|... .|.+++++|+. ++-.||+. +.+..+|+++. .+..||+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~-~~~~vLlG-~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR-GEQQILLG-LGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc-CCCeEEEe-cchhhCCCCCCCCCeEEEEE
Confidence 45688888888888898888887665544 5555322 36779999997 44567774 48899999996 4566777
Q ss_pred EcCCC-CcCh-----------------------------HHHHHHhhhccCCCCcE
Q 000549 1353 LDLWW-NPTT-----------------------------EDQAIDRAHRIGQTRPV 1378 (1431)
Q Consensus 1353 lDp~W-NP~~-----------------------------e~QAIGRvhRIGQtr~V 1378 (1431)
.-+|+ +|.. ..|++||+.|--.-+-|
T Consensus 721 ~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv 776 (820)
T PRK07246 721 TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA 776 (820)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE
Confidence 77553 4522 22899999996655654
No 198
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=88.33 E-value=2.1 Score=56.59 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCC-CCHHHHHHHHHH
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGT-MSVFARDKAVKD 1321 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGs-ms~~qR~~aI~~ 1321 (1431)
.|..|||-+.....-+.|.+.|.+.||++.+++.. ...++-.++|.+
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~ 485 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ 485 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh
Confidence 67888888888888888888888888888888876 333333344443
No 199
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.91 E-value=0.3 Score=55.31 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=36.5
Q ss_pred hhccccccCCCCCccch-hcccCcccchhhhhhhccc-CCCCCCCcccccc
Q 000549 1109 ASLAICGICNDPPEDAV-VSICGHVFCNQCICERLTA-DDNQCPTRNCKIR 1157 (1431)
Q Consensus 1109 ~~~~~C~iC~d~~e~~v-it~CgH~fC~~Ci~~~l~~-~~~~Cp~~~C~~~ 1157 (1431)
++..+|++|.++|..|. +.+|+|++|.-||...... ....||. |...
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~--Cg~~ 285 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPL--CGEN 285 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCc--cCCC
Confidence 34578999999999885 5679999999999997654 4567884 5543
No 200
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=87.84 E-value=4.7 Score=44.60 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=24.6
Q ss_pred ccEEEEcCccccCChhhHHHHHHHhcc-cCcEEEEEcccCCC
Q 000549 905 WFRVVLDEAQSIKNHRTQVARACWGLR-AKRRWCLSGTPIQN 945 (1431)
Q Consensus 905 W~rVILDEAH~IKN~~T~~skal~~L~-ak~RwlLTGTPIqN 945 (1431)
.++||||||.++-.. .....+..+. ...+++|.|-|-|-
T Consensus 94 ~~vliVDEasmv~~~--~~~~ll~~~~~~~~klilvGD~~QL 133 (196)
T PF13604_consen 94 KDVLIVDEASMVDSR--QLARLLRLAKKSGAKLILVGDPNQL 133 (196)
T ss_dssp TSEEEESSGGG-BHH--HHHHHHHHS-T-T-EEEEEE-TTSH
T ss_pred ccEEEEecccccCHH--HHHHHHHHHHhcCCEEEEECCcchh
Confidence 458999999999643 3444444453 47899999998763
No 201
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=87.78 E-value=0.32 Score=57.11 Aligned_cols=50 Identities=26% Similarity=0.884 Sum_probs=41.7
Q ss_pred hhhhccccccCCCCCccchhcccCcccchhhhhhhcccC-CCCCCCccccccc
Q 000549 1107 LEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTAD-DNQCPTRNCKIRL 1158 (1431)
Q Consensus 1107 le~~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~-~~~Cp~~~C~~~l 1158 (1431)
+-++...|.||.+...+.-+.+|||++|..|+..|-..+ ...||- |+-.+
T Consensus 365 MgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPF--CRcEI 415 (563)
T KOG1785|consen 365 MGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPF--CRCEI 415 (563)
T ss_pred ccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCc--eeeEe
Confidence 555667899999999999999999999999999998776 678995 55444
No 202
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.61 E-value=0.9 Score=56.11 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=42.2
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccc--cCCCEEEEechhhh
Q 000549 778 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCEL--AKFDVVITTYSIVS 835 (1431)
Q Consensus 778 TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L--~~~DVVITTY~~L~ 835 (1431)
.|||+|+. |..|-.+.|..... ...+++....|.-....+..+ ...||||.|-..|-
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHH
Confidence 69999997 67888888876655 457899888887554433332 26789999998884
No 203
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.14 E-value=0.19 Score=55.44 Aligned_cols=51 Identities=22% Similarity=0.573 Sum_probs=40.4
Q ss_pred cccccCCCC-----Cccchhcc-cCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000549 1112 AICGICNDP-----PEDAVVSI-CGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1162 (1431)
Q Consensus 1112 ~~C~iC~d~-----~e~~vit~-CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1162 (1431)
.-|++|... .-.-++.| |.|-.|..|+...++...-+||.+.|...|+...
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~k 67 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIK 67 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhc
Confidence 369999642 22234566 9999999999999999999999999998876543
No 204
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.85 E-value=2.2 Score=56.46 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=70.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCC-------cEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeec-cccccccC
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSI-------QYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSL-KAASLGLN 1343 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI-------~~~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~St-kAGg~GLN 1343 (1431)
.+..+|||...-..|+.+...+...|+ ..+.+.+.- ..++++++++|+.. +...||+... ...++|+|
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 457888988888888888887765432 223333332 25789999999752 2334555332 56789999
Q ss_pred cc--ccCEEEEEcCCC-CcC------------------------------hHHHHHHhhhccCCCCcE
Q 000549 1344 MV--AACHVLLLDLWW-NPT------------------------------TEDQAIDRAHRIGQTRPV 1378 (1431)
Q Consensus 1344 Lq--~An~VI~lDp~W-NP~------------------------------~e~QAIGRvhRIGQtr~V 1378 (1431)
+. .+..||++-+|+ ||. ...||+||+.|=-+-+-+
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~ 667 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGS 667 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEE
Confidence 98 578889998887 553 124899999996555443
No 205
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.29 E-value=0.28 Score=56.55 Aligned_cols=43 Identities=30% Similarity=0.768 Sum_probs=36.3
Q ss_pred hccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccc
Q 000549 1110 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCK 1155 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~ 1155 (1431)
....|+||.+....|.+.+|+|.||..|+...+. ....|| .|+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp--~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCP--VCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCc--ccC
Confidence 3467999999988888899999999999999888 555677 466
No 206
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=85.55 E-value=0.31 Score=52.32 Aligned_cols=36 Identities=36% Similarity=0.840 Sum_probs=31.1
Q ss_pred hccccccCCCCCccchhcccCcccchhhhhhhcccC
Q 000549 1110 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTAD 1145 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~ 1145 (1431)
-...|.||-..-+.||++.|||.||..|....+...
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg 230 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG 230 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccC
Confidence 345799999999999999999999999988776544
No 207
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.38 E-value=0.34 Score=55.36 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=37.8
Q ss_pred cccccCCCCC---ccchhcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000549 1112 AICGICNDPP---EDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1158 (1431)
Q Consensus 1112 ~~C~iC~d~~---e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l 1158 (1431)
.+|.||+... ..-+++||.|.|=..|++.|+....++||. |+..+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPv--Crt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPV--CRTAI 371 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCc--cCCCC
Confidence 6799998753 235689999999999999999999999995 87654
No 208
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=85.22 E-value=2.8 Score=49.34 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=37.3
Q ss_pred ccccCccEEEEcCccccCChh---hHHHHHH----HhcccCcEEEEEcccCCCChHHHHhhhh
Q 000549 900 LAKVGWFRVVLDEAQSIKNHR---TQVARAC----WGLRAKRRWCLSGTPIQNAIDDLYSYFR 955 (1431)
Q Consensus 900 L~~i~W~rVILDEAH~IKN~~---T~~skal----~~L~ak~RwlLTGTPIqN~l~DLyslL~ 955 (1431)
|..-.|.++-+||.|...... ..-++++ ++++.--.+.||+|-..+-++|...+|.
T Consensus 211 ~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 211 LEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred hhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 344457789999999763211 1123333 3446667899999999998888777654
No 209
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=84.92 E-value=3.6 Score=54.36 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=55.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHhC-CCcEEecCCCCCHHHHHHHHHHHhcC---CCccEEEeeccccccccCcc--ccCEE
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTL---PEVSVMIMSLKAASLGLNMV--AACHV 1350 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d---~~v~VLL~StkAGg~GLNLq--~An~V 1350 (1431)
.+++||.....+++.+...|... +.+ +...|. ..|.++++.|.+. ++-.||+. +.+..+|+++. ....|
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g-~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFG-LQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEE-eccccccccCCCCceEEE
Confidence 34788887788888888888643 333 344564 3578899888752 34456664 48889999997 46888
Q ss_pred EEEcCCC-Cc
Q 000549 1351 LLLDLWW-NP 1359 (1431)
Q Consensus 1351 I~lDp~W-NP 1359 (1431)
|+.-+|+ +|
T Consensus 610 II~kLPF~~p 619 (697)
T PRK11747 610 IITKIPFAVP 619 (697)
T ss_pred EEEcCCCCCC
Confidence 8888776 44
No 210
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.80 E-value=0.41 Score=54.25 Aligned_cols=43 Identities=35% Similarity=0.890 Sum_probs=37.1
Q ss_pred cccccCCCCCccchhc-ccCcccchhhhhhhcccCCCCCCCccccc
Q 000549 1112 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKI 1156 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit-~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~ 1156 (1431)
-.|+.|......++-+ .|+|.||.+||...|...+..|| +|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~Cp--nC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCP--NCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCC--Cccc
Confidence 3599999888888887 59999999999999999999999 4653
No 211
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=84.62 E-value=3 Score=43.84 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCC----cEEecCCCCCHHHHHHHHHHHhcCCC--ccEEEeeccc--cccccCcc--ccCEEEEEcCCC
Q 000549 1288 MLDLLEASLKDSSI----QYRRLDGTMSVFARDKAVKDFNTLPE--VSVMIMSLKA--ASLGLNMV--AACHVLLLDLWW 1357 (1431)
Q Consensus 1288 ~LdlLe~~L~~~gI----~~~rldGsms~~qR~~aI~~Fn~d~~--v~VLL~StkA--Gg~GLNLq--~An~VI~lDp~W 1357 (1431)
.++.+...++..++ .-+.+.+.. ..+..++++.|+...+ ..||+ ++.. .++|+||. .+..||+.-+|+
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 45555566665543 233444443 2355799999997432 23555 4344 79999998 457788887775
Q ss_pred -CcC
Q 000549 1358 -NPT 1360 (1431)
Q Consensus 1358 -NP~ 1360 (1431)
+|.
T Consensus 81 p~~~ 84 (142)
T smart00491 81 PNPD 84 (142)
T ss_pred CCCC
Confidence 443
No 212
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.47 E-value=4.1 Score=50.47 Aligned_cols=97 Identities=21% Similarity=0.177 Sum_probs=77.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----CCC----cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKD----SSI----QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVA 1346 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~----~gI----~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~ 1346 (1431)
.+-+.|.||..+++.+++-...+. -+- .+..|.|+-...+|.++-.+.-. ++..-+| +|.|..+|++.-.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~-G~L~giI-aTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG-GKLCGII-ATNALELGIDIGH 601 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC-CeeeEEE-ecchhhhcccccc
Confidence 567999999999887776544332 121 24568899999999998777665 4555455 7899999999999
Q ss_pred cCEEEEEcCCCCcChHHHHHHhhhccC
Q 000549 1347 ACHVLLLDLWWNPTTEDQAIDRAHRIG 1373 (1431)
Q Consensus 1347 An~VI~lDp~WNP~~e~QAIGRvhRIG 1373 (1431)
-+.|+++.-+..-+...|-.||++|-.
T Consensus 602 LDAVl~~GFP~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 602 LDAVLHLGFPGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred ceeEEEccCchhHHHHHHHhccccccC
Confidence 999999999999999999999999954
No 213
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.90 E-value=7.7 Score=46.12 Aligned_cols=58 Identities=26% Similarity=0.243 Sum_probs=39.6
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Ccccc-cCCCEEEEechhhhc
Q 000549 778 TLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL-AKFDVVITTYSIVSM 836 (1431)
Q Consensus 778 TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-~~~~L-~~~DVVITTY~~L~~ 836 (1431)
.||+.|.. +-.|-.+++. .....-.+++.++.|.-..- ....| .+-++|++|-+.+.-
T Consensus 78 alvlTPTrELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad 138 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLAD 138 (442)
T ss_pred EEEecchHHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCcccccc
Confidence 59999997 5677777774 55555578888887764322 22233 467899999887753
No 214
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.89 E-value=7.7 Score=47.65 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=35.2
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-Ccccc--cCCCEEEEechhhh
Q 000549 777 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTK-DPCEL--AKFDVVITTYSIVS 835 (1431)
Q Consensus 777 ~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k-~~~~L--~~~DVVITTY~~L~ 835 (1431)
..|||.|+- |-.|-.+=+..+...-..+....+.|..... +...+ ....|+|.|-..|.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~ 143 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLL 143 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHH
Confidence 479999997 4455444333332212367777887774322 22222 24569999988885
No 215
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=83.65 E-value=3.6 Score=47.86 Aligned_cols=101 Identities=20% Similarity=0.144 Sum_probs=60.4
Q ss_pred cCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhcccccccccccccc
Q 000549 662 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 741 (1431)
Q Consensus 662 ~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 741 (1431)
...+++-|..|+--|. .|-|.=-.+|=|||+++ ++.+....-
T Consensus 75 g~~p~~vQll~~l~L~---------~G~laEm~TGEGKTli~-~l~a~~~AL---------------------------- 116 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH---------KGRLAEMKTGEGKTLIA-ALPAALNAL---------------------------- 116 (266)
T ss_dssp S----HHHHHHHHHHH---------TTSEEEESTTSHHHHHH-HHHHHHHHT----------------------------
T ss_pred CCcccHHHHhhhhhcc---------cceeEEecCCCCcHHHH-HHHHHHHHH----------------------------
Confidence 3456667888876663 56788888999999988 343332100
Q ss_pred ccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 000549 742 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTKD 817 (1431)
Q Consensus 742 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL----~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~ 817 (1431)
..+++=||+...-| .+|...+-+++. +++-..........
T Consensus 117 --------------------------------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LG----lsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 117 --------------------------------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLG----LSVGIITSDMSSEE 160 (266)
T ss_dssp --------------------------------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT------EEEEETTTEHHH
T ss_pred --------------------------------hcCCcEEEeccHHHhhccHHHHHHHHHHhh----hccccCccccCHHH
Confidence 01346778877765 478888887764 77777666543222
Q ss_pred cccccCCCEEEEechhhhc
Q 000549 818 PCELAKFDVVITTYSIVSM 836 (1431)
Q Consensus 818 ~~~L~~~DVVITTY~~L~~ 836 (1431)
....-..||+-+|-..+.-
T Consensus 161 r~~~Y~~dI~Y~t~~~~~f 179 (266)
T PF07517_consen 161 RREAYAADIVYGTNSEFGF 179 (266)
T ss_dssp HHHHHHSSEEEEEHHHHHH
T ss_pred HHHHHhCcccccccchhhH
Confidence 2334467888888777754
No 216
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=83.08 E-value=8.9 Score=49.80 Aligned_cols=42 Identities=26% Similarity=0.156 Sum_probs=34.0
Q ss_pred cCccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCC
Q 000549 903 VGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 946 (1431)
Q Consensus 903 i~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~ 946 (1431)
..+++||||||-++-. ...++.+..+....|++|-|=|-|-.
T Consensus 264 l~~dvlIvDEaSMvd~--~lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 264 LHLDVLVVDEASMVDL--PMMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred CCCCeEEEChHhcccH--HHHHHHHHhcccCCEEEEecchhhcC
Confidence 3568999999999953 46677788889999999999887643
No 217
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=82.68 E-value=4.9 Score=48.62 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.9
Q ss_pred cCccEEEEcCccccCC
Q 000549 903 VGWFRVVLDEAQSIKN 918 (1431)
Q Consensus 903 i~W~rVILDEAH~IKN 918 (1431)
-.++.|||||||++..
T Consensus 82 ~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRT 97 (352)
T ss_pred CcCCEEEEehhHhhhh
Confidence 3578999999999987
No 218
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=82.49 E-value=0.49 Score=59.23 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=32.1
Q ss_pred CccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 660 VLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 660 ~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
.+...|-+-|+.|+.+...... + -++=-..|.|||.+..-+|..
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~k~--l----~~I~GPPGTGKT~TlvEiI~q 224 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINNKD--L----LIIHGPPGTGKTRTLVEIISQ 224 (649)
T ss_pred cCCccccHHHHHHHHHHhccCC--c----eEeeCCCCCCceeeHHHHHHH
Confidence 3445688899999999886531 1 355557899999988777754
No 219
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=82.11 E-value=6.4 Score=52.94 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIA 705 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIA 705 (1431)
...|+-|..-...+.+-.... .-.++--..|.|||+.-+.
T Consensus 244 ~e~R~~Q~~ma~~V~~~l~~~---~~~~~eA~tGtGKT~ayll 283 (820)
T PRK07246 244 LEERPKQESFAKLVGEDFHDG---PASFIEAQTGIGKTYGYLL 283 (820)
T ss_pred CccCHHHHHHHHHHHHHHhCC---CcEEEECCCCCcHHHHHHH
Confidence 357889998666665543321 1134555899999987643
No 220
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=82.06 E-value=11 Score=46.72 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=95.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccc-cccCccccCEEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS-LGLNMVAACHVLLL 1353 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg-~GLNLq~An~VI~l 1353 (1431)
...++|||...---.-.|..+|++.++.|+.+.--++..+-.++-..|.. +...|||.|-++-= .=..+..+.+||||
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 55788999877766777899999999999999999999999999999998 88999999966532 13356689999999
Q ss_pred cCCCCcChHHHHHHhhhccCC----CCcEEEEEEEeCC-CH-HHHHHHHHHHH
Q 000549 1354 DLWWNPTTEDQAIDRAHRIGQ----TRPVSVLRLTVKN-TV-EDRILALQQKK 1400 (1431)
Q Consensus 1354 Dp~WNP~~e~QAIGRvhRIGQ----tr~V~VyrLi~kd-TI-EErIlelq~kK 1400 (1431)
.||-+|.-....+.-+..-.+ ..+.+|.-|.++= .+ =|||+..+..+
T Consensus 378 ~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ra~ 430 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTERAS 430 (442)
T ss_pred CCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHHHHH
Confidence 999999988888766555433 3446666666653 22 24555544433
No 221
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=80.99 E-value=10 Score=49.11 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=33.0
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCC
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 946 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~ 946 (1431)
.+++||||||-++-. ....+.+..++...|++|.|=|-|-.
T Consensus 259 ~~dvlIiDEaSMvd~--~l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 259 PLDVLVVDEASMVDL--PLMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred cccEEEEcccccCCH--HHHHHHHHhcCCCCEEEEECChhhCC
Confidence 578999999999964 35666777788889999999886643
No 222
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=80.85 E-value=9.1 Score=52.30 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTI 704 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaI 704 (1431)
...||-|.+-+..+.+..... .-.++=-.+|.|||+--|
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~---~~~~iEA~TGtGKTlaYL 294 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDS---EHALIEAGTGTGKSLAYL 294 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcC---CCEEEECCCCCchhHHHH
Confidence 457889998666666544321 113334489999998764
No 223
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=79.79 E-value=6.6 Score=51.58 Aligned_cols=98 Identities=14% Similarity=0.201 Sum_probs=73.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCcc--ccCEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMV--AACHVLL 1352 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq--~An~VI~ 1352 (1431)
.|++|.|||....+.+++++.....+..++.+++..+..+. +.| .+++|++-| .+..+||++- --+.|+.
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W---~~~~VviYT-~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW---KKYDVVIYT-PVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc---cceeEEEEe-ceEEEEeccchhhceEEEE
Confidence 78999999999999999999999999999999888765522 333 468898866 6778899886 3466666
Q ss_pred E--cCCCCcCh--HHHHHHhhhccCCCCcEEEE
Q 000549 1353 L--DLWWNPTT--EDQAIDRAHRIGQTRPVSVL 1381 (1431)
Q Consensus 1353 l--Dp~WNP~~--e~QAIGRvhRIGQtr~V~Vy 1381 (1431)
| ....-|.. ..|.+|||..+...+ +.||
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRvR~l~~~e-i~v~ 384 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRVRSLLDNE-IYVY 384 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHHHhhccCe-EEEE
Confidence 5 22334554 489999999998544 4444
No 224
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=79.24 E-value=11 Score=50.04 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=31.6
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCCC
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNA 946 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN~ 946 (1431)
..++||||||+++-.. ...+.+..+....|++|-|=|-|-.
T Consensus 416 ~~~llIvDEaSMvd~~--~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--LALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred cCCEEEEeccccCCHH--HHHHHHHhCCCCCEEEEECcccccc
Confidence 3578999999999543 4566667778888999999886643
No 225
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.74 E-value=1.3 Score=52.85 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=43.3
Q ss_pred HHHHHhhhhccccccCCCCC---ccchhcccCcccchhhhhhhccc-------CCCCCCCcccccccc
Q 000549 1102 YLLNCLEASLAICGICNDPP---EDAVVSICGHVFCNQCICERLTA-------DDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1102 ~ll~~le~~~~~C~iC~d~~---e~~vit~CgH~fC~~Ci~~~l~~-------~~~~Cp~~~C~~~l~ 1159 (1431)
.-+..+..++..|.+|.+.. ...+.++|.|+||..|...+.+. ..-+||.+.|.....
T Consensus 175 a~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~ 242 (445)
T KOG1814|consen 175 ATLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAP 242 (445)
T ss_pred HHHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCC
Confidence 33445666788999999853 34578999999999999998654 234799988876543
No 226
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=78.59 E-value=1.2 Score=41.32 Aligned_cols=39 Identities=41% Similarity=0.963 Sum_probs=28.5
Q ss_pred cccccCCCCCcc------------c-hhcccCcccchhhhhhhcccCCCCCCC
Q 000549 1112 AICGICNDPPED------------A-VVSICGHVFCNQCICERLTADDNQCPT 1151 (1431)
Q Consensus 1112 ~~C~iC~d~~e~------------~-vit~CgH~fC~~Ci~~~l~~~~~~Cp~ 1151 (1431)
..|.||.++..+ + +...|+|.|-..||..++.... .||.
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~ 71 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPL 71 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TT
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCC
Confidence 459999886521 1 3467999999999999996655 7884
No 227
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=78.29 E-value=0.67 Score=54.03 Aligned_cols=45 Identities=36% Similarity=0.844 Sum_probs=37.3
Q ss_pred cccccCCCCCccc-hhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000549 1112 AICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~-vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
..|.+|..-..++ .++.|.|.||..||-.++.. ...||. |...+.
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~--C~i~ih 61 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPT--CDIVIH 61 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCc--cceecc
Confidence 5799999887776 57899999999999999988 778996 665543
No 228
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=78.04 E-value=13 Score=49.04 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=23.8
Q ss_pred ccEEEEcCccccCChh--------hHHHHHHHhc--ccCcEEEEEccc
Q 000549 905 WFRVVLDEAQSIKNHR--------TQVARACWGL--RAKRRWCLSGTP 942 (1431)
Q Consensus 905 W~rVILDEAH~IKN~~--------T~~skal~~L--~ak~RwlLTGTP 942 (1431)
|+.|||||+-.+-+.- ......+..+ ++++.+++-||-
T Consensus 143 yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 143 YDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 8999999986543321 1112223333 688999999874
No 229
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.77 E-value=1.2 Score=51.28 Aligned_cols=44 Identities=30% Similarity=0.638 Sum_probs=35.1
Q ss_pred ccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccccc
Q 000549 1111 LAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1157 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~ 1157 (1431)
...|.||-..-..||++.|+|.||..|-...+.... .|+ .|..+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~--vC~~~ 284 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCY--VCSQQ 284 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCC-cce--ecccc
Confidence 356999999999999999999999999988776543 344 35544
No 230
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.68 E-value=1.3 Score=52.80 Aligned_cols=48 Identities=31% Similarity=0.620 Sum_probs=39.1
Q ss_pred cccccCCCCCc---cchhcccCcccchhhhhhhcccCCCCCCCcccccccccc
Q 000549 1112 AICGICNDPPE---DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1161 (1431)
Q Consensus 1112 ~~C~iC~d~~e---~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~ 1161 (1431)
..|.||.|.-+ .-.+.+|.|.|=..||+.|++.....||. |+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPv--CK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPV--CKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCC--CCCcCCCC
Confidence 48999998643 34679999999999999999999888995 88765443
No 231
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.58 E-value=1.2 Score=54.29 Aligned_cols=47 Identities=34% Similarity=0.799 Sum_probs=38.4
Q ss_pred hccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000549 1110 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
+...|.+|......|+.++|||.||..||...+. ....||. |+..+.
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~--Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPL--CRDELV 129 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcc--cccccc
Confidence 3467999999999999999999999999988555 5567885 776654
No 232
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.34 E-value=1 Score=57.55 Aligned_cols=49 Identities=29% Similarity=0.623 Sum_probs=39.3
Q ss_pred hccccccCCCCCcc-----chhcccCcccchhhhhhhcccCCCCCCCcccccccccc
Q 000549 1110 SLAICGICNDPPED-----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1161 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~-----~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~ 1161 (1431)
....|.||.+.... +-..+|+|+||..|+.+|+.. ...||. |+..+...
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~--CR~~~~~~ 343 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPT--CRTVLYDY 343 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCc--chhhhhcc
Confidence 35679999998776 678899999999999999987 677986 76644333
No 233
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=73.96 E-value=1.9 Score=46.68 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=12.8
Q ss_pred cccCCCEEEEechhhhc
Q 000549 820 ELAKFDVVITTYSIVSM 836 (1431)
Q Consensus 820 ~L~~~DVVITTY~~L~~ 836 (1431)
....+||||++|..+-.
T Consensus 116 ~~~~adivi~~y~yl~~ 132 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFD 132 (174)
T ss_dssp CGGG-SEEEEETHHHHS
T ss_pred hcccCCEEEeCHHHHhh
Confidence 34578999999999863
No 234
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=73.93 E-value=2.7 Score=52.68 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHH
Q 000549 666 LRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 707 (1431)
Q Consensus 666 ~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI 707 (1431)
.|-|++++-.|+++ +-++-+-..|-|||+.-+.=|
T Consensus 160 t~iq~~aipvfl~~-------r~~lAcapTGsgKtlaf~~Pi 194 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEK-------RDVLACAPTGSGKTLAFNLPI 194 (593)
T ss_pred Ccccchhhhhhhcc-------cceEEeccCCCcchhhhhhHH
Confidence 46899999999965 447888999999987654433
No 235
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=1.6 Score=50.79 Aligned_cols=35 Identities=34% Similarity=0.724 Sum_probs=31.7
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcccCC
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTADD 1146 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~ 1146 (1431)
..|+||.-.+..++++||+|--|..||..++.+..
T Consensus 423 ~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k 457 (489)
T KOG4692|consen 423 NLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCK 457 (489)
T ss_pred ccCcceecccchhhccCCCCchHHHHHHHHHhcCC
Confidence 46999999999999999999999999999987543
No 236
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=73.45 E-value=37 Score=44.94 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=36.0
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEEEcccCCCChHHHHhhhhccccCCc
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 962 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 962 (1431)
+|.++||||+|++.+.. ....++.| ....+++|+.|=.+.=+.-|.+-...++..++
T Consensus 119 r~KVIIIDEah~LT~~A--~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~L 178 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178 (830)
T ss_pred CceEEEEeChhhCCHHH--HHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCc
Confidence 47789999999996532 22334444 45678888888665555556665544444444
No 237
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=72.79 E-value=14 Score=47.38 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=82.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC------CC--cEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCcc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS------SI--QYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMV 1345 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~------gI--~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq 1345 (1431)
+..-||||=.-..-++.+...|.+. +. -++-++|+++.++..++ |...| +.|=+|+||..+...|...
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEec
Confidence 5568999998888877777777653 11 24678999998776554 76644 5666666889998888887
Q ss_pred ccCEEEE----EcCCCCc-----------ChHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000549 1346 AACHVLL----LDLWWNP-----------TTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1389 (1431)
Q Consensus 1346 ~An~VI~----lDp~WNP-----------~~e~QAIGRvhRIGQtr~V~VyrLi~kdTI 1389 (1431)
.-.+||= ---.||| -.-.||.-|++|-|.+.+..+|||+++.-.
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 7666641 1123555 356789999999999999999999998766
No 238
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=72.41 E-value=2.1 Score=48.35 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=41.8
Q ss_pred EeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCC
Q 000549 1332 IMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1332 L~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr 1376 (1431)
++++...|.|++..+.|.||+||.+-.+.....+++|+.|.|-+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 447799999999999999999999999999999999999999665
No 239
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=71.88 E-value=19 Score=46.36 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=37.1
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 655 SAPDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 655 ~~P~g~l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
.+-+|.......|||++-+.-|.... ++--.+.=-.-+|||..++.+|.+
T Consensus 7 s~~pG~w~~~~~Py~~eimd~~~~~~-----v~~Vv~~k~aQ~GkT~~~~n~~g~ 56 (557)
T PF05876_consen 7 SAEPGPWRTDRTPYLREIMDALSDPS-----VREVVVMKSAQVGKTELLLNWIGY 56 (557)
T ss_pred CCCCCCCCCCCChhHHHHHHhcCCcC-----ccEEEEEEcchhhHhHHHHhhceE
Confidence 34456677889999999888876443 345677777899999988777754
No 240
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=70.27 E-value=2.4 Score=48.80 Aligned_cols=48 Identities=27% Similarity=0.764 Sum_probs=37.1
Q ss_pred ccccCCC-----CCccchhcccCcccchhhhhhhcccCCCCCCCccccccccccc
Q 000549 1113 ICGICND-----PPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSS 1162 (1431)
Q Consensus 1113 ~C~iC~d-----~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~ 1162 (1431)
.|+.|.. |.-...+.+|+|-+|..|+...+...+..|| .|...+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~Cp--eC~~iLRk~n 54 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCP--ECMVILRKNN 54 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCC--cccchhhhcc
Confidence 4777753 2222346799999999999999999999999 8988876653
No 241
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=68.94 E-value=32 Score=46.00 Aligned_cols=39 Identities=31% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHH
Q 000549 664 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 664 ~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~ 708 (1431)
.|-.-|+.|+...+.-+.- .++--..|.|||-++.+||-
T Consensus 669 ~LN~dQr~A~~k~L~aedy------~LI~GMPGTGKTTtI~~LIk 707 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDY------ALILGMPGTGKTTTISLLIK 707 (1100)
T ss_pred hcCHHHHHHHHHHHhccch------heeecCCCCCchhhHHHHHH
Confidence 5778999999888865542 45555679999988877763
No 242
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=68.60 E-value=2.6 Score=51.77 Aligned_cols=45 Identities=38% Similarity=0.962 Sum_probs=37.7
Q ss_pred cccccCCCCCccchhc-ccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000549 1112 AICGICNDPPEDAVVS-ICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit-~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
-.|++|..+..+|+.+ .|||.||..|+.+++.. ...||. |...+.
T Consensus 22 l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~--~~~~~~ 67 (391)
T KOG0297|consen 22 LLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPV--CRQELT 67 (391)
T ss_pred ccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcc--cccccc
Confidence 4699999999999995 99999999999999988 777884 544443
No 243
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=65.13 E-value=25 Score=45.26 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=29.9
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc-------ccC-cEEEEEcccCCCChHHHHhh
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSY 953 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L-------~ak-~RwlLTGTPIqN~l~DLysl 953 (1431)
+|..||||||| .+|..+..+..| +.. +.+++|||-=-..+.+++.-
T Consensus 163 kYsvIIlDEAH----ERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 163 KYSVIILDEAH----ERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred cccEEEEechh----hhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 46789999999 445555544333 333 66889999755555555544
No 244
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=65.12 E-value=3.5 Score=36.13 Aligned_cols=44 Identities=27% Similarity=0.668 Sum_probs=32.0
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCccccccccc
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSL 1160 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~ 1160 (1431)
..|-.|.......++.+|||++|..|..-.-+ +.|| .|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rY---ngCP--fC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCFPGERY---NGCP--FCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccceeeccccChhhc---cCCC--CCCCcccC
Confidence 45777777777788999999999999866443 4566 36665543
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=64.83 E-value=4.8 Score=40.64 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=26.6
Q ss_pred cEEEEcCccccCChhhHHHHHHHhc--ccCcEEEEEccc
Q 000549 906 FRVVLDEAQSIKNHRTQVARACWGL--RAKRRWCLSGTP 942 (1431)
Q Consensus 906 ~rVILDEAH~IKN~~T~~skal~~L--~ak~RwlLTGTP 942 (1431)
.+|||||+|++. +......++.+ .....++|.|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 589999999983 24445555555 677789999999
No 246
>PHA02533 17 large terminase protein; Provisional
Probab=64.32 E-value=73 Score=40.99 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=28.6
Q ss_pred ccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 661 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 661 l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
..++|.|+|+..+.+|..+ +-.++.=-=..|||..+.++++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~-------R~~ii~~aRq~GKStl~a~~al~ 97 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKN-------RFNACNLSRQLGKTTVVAIFLLH 97 (534)
T ss_pred eecCCcHHHHHHHHHHhcC-------eEEEEEEcCcCChHHHHHHHHHH
Confidence 4577999999999887421 11244444589999888665543
No 247
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=61.62 E-value=34 Score=45.05 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccccccc
Q 000549 667 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVK 746 (1431)
Q Consensus 667 phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k 746 (1431)
-.|-.++.-+.+.-.... +.-+|---.|.|||+++..++...
T Consensus 12 ~~Q~~ai~~l~~~~~~~~--~~~~l~Gvtgs~kt~~~a~~~~~~------------------------------------ 53 (655)
T TIGR00631 12 GDQPKAIAKLVEGLTDGE--KHQTLLGVTGSGKTFTMANVIAQV------------------------------------ 53 (655)
T ss_pred hHHHHHHHHHHHhhhcCC--CcEEEECCCCcHHHHHHHHHHHHh------------------------------------
Confidence 388888888876543221 123577778999999997776431
Q ss_pred cccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhcC
Q 000549 747 QESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVTS 800 (1431)
Q Consensus 747 ~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~~ 800 (1431)
.+|+|||+|.. +..||.+|++.+++.
T Consensus 54 ----------------------------~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 54 ----------------------------NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred ----------------------------CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 14699999987 557999999999873
No 248
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=60.45 E-value=40 Score=45.29 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.0
Q ss_pred CcEEEcCCCCChHHHHHHHH
Q 000549 688 GGILADDQGLGKTISTIALI 707 (1431)
Q Consensus 688 GGILADEMGLGKTlqaIALI 707 (1431)
-.||+-|.|.|||-+.=-++
T Consensus 67 vvii~getGsGKTTqlP~~l 86 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFL 86 (845)
T ss_pred EEEEeCCCCCChHHHHHHHH
Confidence 37999999999998874444
No 249
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=60.37 E-value=3.1 Score=53.01 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCC-----HHHHHHHHHHHhcC--CCccEEEeec--cccccccCcc--
Q 000549 1277 EKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMS-----VFARDKAVKDFNTL--PEVSVMIMSL--KAASLGLNMV-- 1345 (1431)
Q Consensus 1277 ~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms-----~~qR~~aI~~Fn~d--~~v~VLL~St--kAGg~GLNLq-- 1345 (1431)
.-||+|-..-..|..+....+..||- .++.|.-+ ..--+++++.|... .+.-.||++. .-.++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEeccccccccccccc
Confidence 67899999999999999999987763 12222210 01135667777642 1112344342 3356899998
Q ss_pred ccCEEEEEcCCCC
Q 000549 1346 AACHVLLLDLWWN 1358 (1431)
Q Consensus 1346 ~An~VI~lDp~WN 1358 (1431)
-+..||++.+|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 4677888888873
No 250
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=60.36 E-value=5 Score=47.28 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHH
Q 000549 665 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 665 L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~ 708 (1431)
.||.|+.-..-+.+..... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666665544322 3367777899999999876553
No 251
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=60.36 E-value=5 Score=47.28 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHH
Q 000549 665 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 665 L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~ 708 (1431)
.||.|+.-..-+.+..... .-+|+--..|.|||+..|..++
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~---~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRG---KIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CCHHHHHHHHHHHHHHHcC---CcEEEECCCCcchhHHHHHHHH
Confidence 4899999666665544322 3367777899999999876553
No 252
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.16 E-value=4.2 Score=49.57 Aligned_cols=46 Identities=28% Similarity=0.713 Sum_probs=35.4
Q ss_pred ccccccCCCCCc-----------------cchhcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000549 1111 LAICGICNDPPE-----------------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1158 (1431)
Q Consensus 1111 ~~~C~iC~d~~e-----------------~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l 1158 (1431)
...|.||..+.+ .-.+|||.|+|-.+|+..++....-.||. |+..+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPv--CR~pL 633 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPV--CRCPL 633 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCc--cCCCC
Confidence 357999987532 12468999999999999999888888995 55443
No 253
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.13 E-value=4.7 Score=45.56 Aligned_cols=45 Identities=31% Similarity=0.786 Sum_probs=30.4
Q ss_pred cccccCCCCCc-cc-hhcccCcccchhhhhhhcccCCCCCCCcccccccccc
Q 000549 1112 AICGICNDPPE-DA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLS 1161 (1431)
Q Consensus 1112 ~~C~iC~d~~e-~~-vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~ 1161 (1431)
..|..|...+. ++ .+|.|+|+||..|..-.... .|| .|+..+...
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~---~C~--lCkk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD---VCP--LCKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCcc---ccc--cccceeeee
Confidence 35778876443 33 57999999999998654432 677 477665543
No 254
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=58.13 E-value=2.3e+02 Score=39.19 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCcHHHHHHHHHHHH-hhccCCCCCCcEEEcCCCCChHHHHHHHH
Q 000549 664 PLLRHQRIALSWMVQ-KETSSLHCSGGILADDQGLGKTISTIALI 707 (1431)
Q Consensus 664 ~L~phQk~al~wMl~-rE~~~~~~~GGILADEMGLGKTlqaIALI 707 (1431)
+=+.||-.|+.-... +++...++.=||-.-.+|-|||+.=.-++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm 452 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM 452 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH
Confidence 346799999887665 33333333337778889999999764444
No 255
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.54 E-value=1.2e+02 Score=39.87 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 668 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 668 hQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
|=+..+..++.+.+ ....-||.-..|.|||..|.+++..
T Consensus 22 ~vv~~L~~aI~~gr---l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 22 HVSRALSSALERGR---LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555554322 1234599999999999888766543
No 256
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.10 E-value=5.1 Score=44.98 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.4
Q ss_pred cccccCCCCCccchhcccCcccchhhhhhhcc
Q 000549 1112 AICGICNDPPEDAVVSICGHVFCNQCICERLT 1143 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~ 1143 (1431)
.-|..|..|..+||+++-||+||++||.+++-
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 56999999999999999999999999999853
No 257
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=56.37 E-value=38 Score=38.58 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
+-||+-|.+-+..|..-. ...+.++=--||-|||-..+=+++.
T Consensus 22 iliR~~Q~~ia~~mi~~~----~~~n~v~QlnMGeGKTsVI~Pmla~ 64 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPP----SGKNSVMQLNMGEGKTSVIVPMLAL 64 (229)
T ss_pred ceeeHHHHHHHHHHhCCC----CCCCeEeeecccCCccchHHHHHHH
Confidence 458999999999998532 2356788999999999776555544
No 258
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=55.90 E-value=4.9 Score=47.02 Aligned_cols=46 Identities=24% Similarity=0.667 Sum_probs=36.9
Q ss_pred ccccccCCCCCccc-hhcccCcccchhhhhhhcccCCCCCCCcccccc
Q 000549 1111 LAICGICNDPPEDA-VVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1157 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~-vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~ 1157 (1431)
...|++|...-.+| +++.-|-+||..||..++. .-..||..+|...
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 45699998876554 6778899999999999998 5678998777643
No 259
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.37 E-value=1.4e+02 Score=37.99 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEEEcccCCCChHHHHhhh
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYF 954 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPIqN~l~DLyslL 954 (1431)
.|..+||||||++... .....++.| ....+++|+.|-...=+.-|.+-.
T Consensus 121 ~~KV~IIDEah~Ls~~--A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQ--SFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred CCEEEEEechhhcCHH--HHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 4678999999999532 223334444 244556666665443334455543
No 260
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.52 E-value=1.6e+02 Score=37.77 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=31.8
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEEEcccCCCChHHHHhhhhccccCCc
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 962 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 962 (1431)
+|.++||||+|++-.. .....++.| ....+++|..|-.+.-+.-+.+-...+...++
T Consensus 119 ~~kV~iIDE~~~ls~~--a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l 178 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH--SFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQL 178 (509)
T ss_pred CcEEEEEEChHhcCHH--HHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCC
Confidence 4678999999999542 222233333 34566777666545544445444333333333
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=54.48 E-value=32 Score=39.75 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.6
Q ss_pred cEEEcCCCCChHHHHHHHH
Q 000549 689 GILADDQGLGKTISTIALI 707 (1431)
Q Consensus 689 GILADEMGLGKTlqaIALI 707 (1431)
-||.=..|.|||..|-++.
T Consensus 45 vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 45 MIFKGNPGTGKTTVARILG 63 (261)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999998885554
No 262
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.53 E-value=6.6 Score=47.11 Aligned_cols=45 Identities=31% Similarity=0.829 Sum_probs=31.9
Q ss_pred ccccccCCCCCccc--------hhcccCcccchhhhhhhcccCC------CCCCCcccccc
Q 000549 1111 LAICGICNDPPEDA--------VVSICGHVFCNQCICERLTADD------NQCPTRNCKIR 1157 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~--------vit~CgH~fC~~Ci~~~l~~~~------~~Cp~~~C~~~ 1157 (1431)
...|+||.+..-.. ++..|.|.||..||..|-.... ..|| .|+..
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP--~CRv~ 219 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCP--FCRVP 219 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCC--cccCc
Confidence 35799999864332 3477999999999999973332 4577 46554
No 263
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.61 E-value=6.2 Score=46.89 Aligned_cols=46 Identities=30% Similarity=0.637 Sum_probs=37.1
Q ss_pred ccccccCCCCCccchhcccCccc-chhhhhhhcccCCCCCCCcccccccc
Q 000549 1111 LAICGICNDPPEDAVVSICGHVF-CNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~vit~CgH~f-C~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
-.+|-||...+.+.++.||.|.- |..|-.... --.+.|| .|+..+.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CP--ICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCP--ICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCC--ccccchH
Confidence 35799999999999999999986 999987765 3456688 4887653
No 264
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.25 E-value=1.1e+02 Score=37.33 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=17.2
Q ss_pred cEEEcCCCCChHHHHHHHHHH
Q 000549 689 GILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 689 GILADEMGLGKTlqaIALI~~ 709 (1431)
-||.=+.|.|||..|.+++..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 489999999999888777643
No 265
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=51.23 E-value=37 Score=38.82 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=43.5
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-cccc-CCCEEEEechhhhc
Q 000549 777 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-CELA-KFDVVITTYSIVSM 836 (1431)
Q Consensus 777 ~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~-~~L~-~~DVVITTY~~L~~ 836 (1431)
.+||+|-+. |-.|-.+|..++-.--+..++.+|.|.-..+.- ..|. -..||+-|-..+..
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilA 174 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILA 174 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHH
Confidence 379999886 678999998877655568899999998665533 3333 34688888877753
No 266
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=50.15 E-value=29 Score=44.52 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhC------CCcEEecCCCCCHHHHHHHHHHHhc-CCCccEEEeeccccccccCccccCEEEEEc----CC
Q 000549 1288 MLDLLEASLKDS------SIQYRRLDGTMSVFARDKAVKDFNT-LPEVSVMIMSLKAASLGLNMVAACHVLLLD----LW 1356 (1431)
Q Consensus 1288 ~LdlLe~~L~~~------gI~~~rldGsms~~qR~~aI~~Fn~-d~~v~VLL~StkAGg~GLNLq~An~VI~lD----p~ 1356 (1431)
+.+.|...|.+. ++.++-|+..++.+-..++ |+. .++++=.|++|..+...|....-.+||=.. -.
T Consensus 579 t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 579 TCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred HHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 556666666542 5678888888886655444 663 456777777889999988888777765322 12
Q ss_pred CCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q 000549 1357 WNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILA 1395 (1431)
Q Consensus 1357 WNP~-----------~e~QAIGRvhRIGQtr~V~VyrLi~kdTIEErIle 1395 (1431)
+||. ..+||--|++|-|.+.|-+-|||+++++..+.|+.
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 4443 44677778888888999999999999988877664
No 267
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=50.01 E-value=11 Score=49.89 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCc-EEEc-CCCCChHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGG-ILAD-DQGLGKTISTI 704 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GG-ILAD-EMGLGKTlqaI 704 (1431)
..-|+-|.+-+..+.+-........+. +++. .+|.|||+--|
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYL 67 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYL 67 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHH
Confidence 357889998666665443321000122 3344 79999998754
No 268
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.85 E-value=1.8e+02 Score=39.53 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=24.7
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEEEcccCCC
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQN 945 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPIqN 945 (1431)
+|.++||||||++.. ....-.++.| ....+++|..|-...
T Consensus 119 k~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 119 RFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred CcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 467899999999942 2222333444 355678887554443
No 269
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=49.27 E-value=68 Score=33.72 Aligned_cols=85 Identities=19% Similarity=0.150 Sum_probs=57.8
Q ss_pred eEEEEcccHHHHHHHHHHHHhCCCcE--EecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcC
Q 000549 1278 KAIVFSQWTKMLDLLEASLKDSSIQY--RRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDL 1355 (1431)
Q Consensus 1278 KvIVFSq~t~~LdlLe~~L~~~gI~~--~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp 1355 (1431)
.|=++||.-.+...|-..+..+|+.+ ..=.|....-.-.++++.|.+||+.+|+++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 46689999999999999998886654 5556666566778999999999999999876 566
Q ss_pred CCCcChHHHHHHhhhccCCCCcEEEEEE
Q 000549 1356 WWNPTTEDQAIDRAHRIGQTRPVSVLRL 1383 (1431)
Q Consensus 1356 ~WNP~~e~QAIGRvhRIGQtr~V~VyrL 1383 (1431)
-=||....++.-|+.|- |||.+++-
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE-
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeC
Confidence 66788888888888764 88888654
No 270
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=47.93 E-value=1.4e+02 Score=40.37 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=66.8
Q ss_pred ccCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccc
Q 000549 661 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 740 (1431)
Q Consensus 661 l~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 740 (1431)
+....++-|..|..-|. .|.|.---+|=|||+++ +|.++...
T Consensus 82 lG~r~ydVQliGgl~Lh---------~G~IAEM~TGEGKTL~a-tlpaylnA---------------------------- 123 (939)
T PRK12902 82 LGMRHFDVQLIGGMVLH---------EGQIAEMKTGEGKTLVA-TLPSYLNA---------------------------- 123 (939)
T ss_pred hCCCcchhHHHhhhhhc---------CCceeeecCCCChhHHH-HHHHHHHh----------------------------
Confidence 34456667888876664 67788888999999986 33333210
Q ss_pred cccccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChhhH----HHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 000549 741 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVL----RQWAEELRNKVTSKGSLSVLVYHGSSRTK 816 (1431)
Q Consensus 741 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL----~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k 816 (1431)
...+++-||.+.--| ..|...+.+|+. |+|-+..+.....
T Consensus 124 --------------------------------L~GkgVhVVTvNdYLA~RDae~m~~vy~~LG----Ltvg~i~~~~~~~ 167 (939)
T PRK12902 124 --------------------------------LTGKGVHVVTVNDYLARRDAEWMGQVHRFLG----LSVGLIQQDMSPE 167 (939)
T ss_pred --------------------------------hcCCCeEEEeCCHHHHHhHHHHHHHHHHHhC----CeEEEECCCCChH
Confidence 012357888888755 489999999875 7887765433333
Q ss_pred CcccccCCCEEEEechhhhc
Q 000549 817 DPCELAKFDVVITTYSIVSM 836 (1431)
Q Consensus 817 ~~~~L~~~DVVITTY~~L~~ 836 (1431)
.....-.+||+-+|-..|.-
T Consensus 168 err~aY~~DItYgTn~e~gF 187 (939)
T PRK12902 168 ERKKNYACDITYATNSELGF 187 (939)
T ss_pred HHHHhcCCCeEEecCCcccc
Confidence 33333477888888776653
No 271
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=46.82 E-value=55 Score=44.09 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=80.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHh----CCCcEEecCCCCCHHHHHHHHHHHhcCCCc-cEEEeeccccccccCccccCEE
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEV-SVMIMSLKAASLGLNMVAACHV 1350 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~v-~VLL~StkAGg~GLNLq~An~V 1350 (1431)
..-+|||-.=..-++-....|.+ ..+.++-++|.++.++..+ -|+..+.- +=+|++|..+-.+|......+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 35689999888888888888877 3577889999999888877 57765544 4245588999999998887766
Q ss_pred EEE----cCCCCcC-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q 000549 1351 LLL----DLWWNPT-----------TEDQAIDRAHRIGQTRPVSVLRLTVKNTVE 1390 (1431)
Q Consensus 1351 I~l----Dp~WNP~-----------~e~QAIGRvhRIGQtr~V~VyrLi~kdTIE 1390 (1431)
|=- .+-|||. .-+.|.-|++|-|.+.+=..|||+.++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 521 1124443 233466666666778888999999986555
No 272
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=45.67 E-value=4.1e+02 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcC
Q 000549 669 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKER 711 (1431)
Q Consensus 669 Qk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r 711 (1431)
|...+..+.+.-.....+..-|+.-.-|.||+-.|.+++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4444444444333322223347888889999999999986643
No 273
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=44.68 E-value=1.9e+02 Score=32.19 Aligned_cols=21 Identities=24% Similarity=0.023 Sum_probs=16.9
Q ss_pred CCcEEEcCCCCChHHHHHHHH
Q 000549 687 SGGILADDQGLGKTISTIALI 707 (1431)
Q Consensus 687 ~GGILADEMGLGKTlqaIALI 707 (1431)
..-+|-=+.|.|||..+.++.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 446788899999999887665
No 274
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=44.58 E-value=31 Score=42.37 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=34.9
Q ss_pred EEEEeChh-hHHHHHHHHHHHhcC-CCCcEEEEEeCCC-CCC-CcccccCCCEEEEechhhhcc
Q 000549 778 TLVVCPTS-VLRQWAEELRNKVTS-KGSLSVLVYHGSS-RTK-DPCELAKFDVVITTYSIVSME 837 (1431)
Q Consensus 778 TLIVcP~S-LL~QW~~EI~k~~~~-~~~L~Vlvy~G~~-r~k-~~~~L~~~DVVITTY~~L~~e 837 (1431)
.+|+||+. |..|-...|.+.... ...++++-...+. ..- ...-....||||+|-..+-..
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 69999987 778888887765431 1134443333211 111 122234679999999887643
No 275
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.45 E-value=8.6 Score=45.77 Aligned_cols=44 Identities=39% Similarity=0.871 Sum_probs=32.4
Q ss_pred hccccccCCCCCccchhcccCcccchhhhhhhcccCCCCCCCcccccccc
Q 000549 1110 SLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLS 1159 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~ 1159 (1431)
....|.+|.+.+.+.+..+|||+-| |....... .+|| .|+..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l--~~CP--vCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL--PQCP--VCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhC--CCCc--hhHHHHH
Confidence 3467999999999999999999987 65444322 2388 4776553
No 276
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.67 E-value=2e+02 Score=36.59 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 667 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 667 phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
+|-...+..++.... .+.+-||.-..|.|||..|-+++..
T Consensus 20 ~~i~~~L~~~i~~~~---l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 20 DHVKKLIINALKKNS---ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHHHHHHHHcCC---CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455555555554322 2233589999999999888766543
No 277
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=43.47 E-value=89 Score=40.97 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=26.3
Q ss_pred CcEEEEeChh-hHHHHHHHHHHHh-c-CCCCcEEEEEeCCCCC
Q 000549 776 AGTLVVCPTS-VLRQWAEELRNKV-T-SKGSLSVLVYHGSSRT 815 (1431)
Q Consensus 776 ~~TLIVcP~S-LL~QW~~EI~k~~-~-~~~~L~Vlvy~G~~r~ 815 (1431)
+++||.+|+. |..|+.+++.... . ....+++.+..|...-
T Consensus 47 ~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr~nY 89 (636)
T TIGR03117 47 QKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGSQEF 89 (636)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECCccc
Confidence 3589999985 6688888876543 1 1235677777776543
No 278
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=42.64 E-value=47 Score=44.88 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=75.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC-------CCcEEecCCCCCHHHHHHHHHHHhcCC-CccEEEeeccccccccCccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS-------SIQYRRLDGTMSVFARDKAVKDFNTLP-EVSVMIMSLKAASLGLNMVA 1346 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~-------gI~~~rldGsms~~qR~~aI~~Fn~d~-~v~VLL~StkAGg~GLNLq~ 1346 (1431)
...-||||-.-..-+..+...|... .+-...+++.|+..+.+++ |+..+ +++=+|++|..+...+..-.
T Consensus 412 ~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RKIIlaTNIAETSITIdD 488 (924)
T KOG0920|consen 412 FEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRKIILATNIAETSITIDD 488 (924)
T ss_pred CCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcchhhhhhhhHhhcccccC
Confidence 3568999999988888888887642 2556788999998777665 66653 34445558888888888876
Q ss_pred cCEEE--------EEcCC---------C-CcChHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q 000549 1347 ACHVL--------LLDLW---------W-NPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTV 1389 (1431)
Q Consensus 1347 An~VI--------~lDp~---------W-NP~~e~QAIGRvhRIGQtr~V~VyrLi~kdTI 1389 (1431)
.-+|| .|||. | .-+.-.||.||++| .++=..|+|+++.-.
T Consensus 489 VvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 489 VVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRY 546 (924)
T ss_pred eEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhh
Confidence 66554 34433 3 33445577777766 566678888876533
No 279
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.58 E-value=13 Score=44.95 Aligned_cols=47 Identities=26% Similarity=0.608 Sum_probs=35.1
Q ss_pred hccccccCCCCC--c-cchhcccCcccchhhhhhhcccCC--CCCCCccccccc
Q 000549 1110 SLAICGICNDPP--E-DAVVSICGHVFCNQCICERLTADD--NQCPTRNCKIRL 1158 (1431)
Q Consensus 1110 ~~~~C~iC~d~~--e-~~vit~CgH~fC~~Ci~~~l~~~~--~~Cp~~~C~~~l 1158 (1431)
+..+|++--+-. + .|+...|||++|.+.+.....+.. .+||. |...-
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPY--CP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPY--CPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCC--CCccc
Confidence 457788875532 2 267889999999999999887766 78885 65443
No 280
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=42.23 E-value=3.2e+02 Score=32.20 Aligned_cols=39 Identities=5% Similarity=0.063 Sum_probs=23.2
Q ss_pred cEEEEcCccccCChhh--HHHHHHHhcccCcEEEEEcccCC
Q 000549 906 FRVVLDEAQSIKNHRT--QVARACWGLRAKRRWCLSGTPIQ 944 (1431)
Q Consensus 906 ~rVILDEAH~IKN~~T--~~skal~~L~ak~RwlLTGTPIq 944 (1431)
..|||||+|.+..... .....+.......++++|++...
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 4699999999843221 12222333355668888886543
No 281
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.82 E-value=38 Score=41.47 Aligned_cols=108 Identities=20% Similarity=0.147 Sum_probs=65.0
Q ss_pred cEEEEeChh-hHHHHHHHHHHHhcCCCCcEEE-EEeCCCCCCCccccc-CCCEEEEechhhhccCCCCCCCCchhHHHHh
Q 000549 777 GTLVVCPTS-VLRQWAEELRNKVTSKGSLSVL-VYHGSSRTKDPCELA-KFDVVITTYSIVSMEVPKQPLGDKEDEEEKM 853 (1431)
Q Consensus 777 ~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vl-vy~G~~r~k~~~~L~-~~DVVITTY~~L~~e~~k~~~~~~~de~~k~ 853 (1431)
..||+.|.. |..|-.+=++..-. .-.++.. .|+|....+....+. ..||||.|-..+.-..- ++
T Consensus 92 RalilsptreLa~qtlkvvkdlgr-gt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v------------em 158 (529)
T KOG0337|consen 92 RALILSPTRELALQTLKVVKDLGR-GTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV------------EM 158 (529)
T ss_pred ceeeccCcHHHHHHHHHHHHHhcc-ccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh------------he
Confidence 479999997 44554443333221 1235444 667766555555554 68999988877642100 00
Q ss_pred hhcCCCCCcccccCcccCCCCCCCccccccCCCCCCCcccccccCCccccCccEEEEcCccccCC--hhhHHHHHHHhcc
Q 000549 854 KIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGPLAKVGWFRVVLDEAQSIKN--HRTQVARACWGLR 931 (1431)
Q Consensus 854 ~~e~~~~~~~~~~~~~k~k~~~~~~rk~~~~kk~~~~~~~~~~~~pL~~i~W~rVILDEAH~IKN--~~T~~skal~~L~ 931 (1431)
.-.|.. ..+||+|||.+|-. ..-+..+.+.++.
T Consensus 159 -------------------------------------------~l~l~s--veyVVfdEadrlfemgfqeql~e~l~rl~ 193 (529)
T KOG0337|consen 159 -------------------------------------------TLTLSS--VEYVVFDEADRLFEMGFQEQLHEILSRLP 193 (529)
T ss_pred -------------------------------------------eccccc--eeeeeehhhhHHHhhhhHHHHHHHHHhCC
Confidence 001222 34699999999854 3456777777884
Q ss_pred -cCcEEEEEccc
Q 000549 932 -AKRRWCLSGTP 942 (1431)
Q Consensus 932 -ak~RwlLTGTP 942 (1431)
....+++|||-
T Consensus 194 ~~~QTllfSatl 205 (529)
T KOG0337|consen 194 ESRQTLLFSATL 205 (529)
T ss_pred CcceEEEEeccC
Confidence 44689999994
No 282
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=41.72 E-value=28 Score=46.42 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=66.2
Q ss_pred cEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCC-----CcChHHHHHHhhhccCC-C
Q 000549 1302 QYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWW-----NPTTEDQAIDRAHRIGQ-T 1375 (1431)
Q Consensus 1302 ~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~W-----NP~~e~QAIGRvhRIGQ-t 1375 (1431)
.+...+.+.+.++|+-+=..|++ +.++|++.+ ...+.|+||.+ .+||+=-|.. .-....|.+||++|.|= |
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~-g~i~vl~aT-STlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT 600 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFRE-GNIFVLVAT-STLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDT 600 (1008)
T ss_pred cceecccccccchHHHHHHHHHh-cCeEEEEec-chhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccccc
Confidence 34556777788899888778887 888888855 55889999985 5565544432 34467799999999873 3
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000549 1376 RPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDET 1413 (1431)
Q Consensus 1376 r~V~VyrLi~kdTIEErIlelq~kK~~l~~~~lg~d~~ 1413 (1431)
..--+ ||++..=..++.++...-......-++++..
T Consensus 601 ~Gdsi--LI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~ 636 (1008)
T KOG0950|consen 601 LGDSI--LIIKSSEKKRVRELVNSPLKPLNSCLSNEVN 636 (1008)
T ss_pred CcceE--EEeeccchhHHHHHHhccccccccccccccc
Confidence 32222 3444433344444444444434333444433
No 283
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=41.62 E-value=3.2e+02 Score=36.36 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=30.2
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEEEcccCCCChHHHHhhhh
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAIDDLYSYFR 955 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPIqN~l~DLyslL~ 955 (1431)
++.+|||||+|.+... .....++.| ....+++|+.|=...-+.-+.+-+.
T Consensus 119 k~KVIIIDEad~Ls~~--A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~ 171 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS--AFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCL 171 (709)
T ss_pred CcEEEEEECccccCHH--HHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHh
Confidence 4678999999998532 222334444 3456778877755555555555443
No 284
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=41.44 E-value=2.9e+02 Score=36.50 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=31.6
Q ss_pred cCCCCcEEEEE--EEeCCCHHHHHHHHHHHHHHHHHHHhCCCCcCcccccCCHHHHHHhhc
Q 000549 1372 IGQTRPVSVLR--LTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1372 IGQtr~V~Vyr--Li~kdTIEErIlelq~kK~~l~~~~lg~d~~~~~~~~lt~~DL~~LF~ 1430 (1431)
+|+.-.+.|.. =....|--++-.+..+.|++.+...+-.|. .+..|...|+
T Consensus 584 ~g~~~~l~i~~~~~~~~~tp~~~~~~~~~~~~~~a~~~~~~Dp--------~v~~l~~~f~ 636 (647)
T PRK07994 584 LGRTVELTIEEDDNPAVETPLEWRQRIYEEKLAQAEESIIADP--------NIQTLRQFFD 636 (647)
T ss_pred hCCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHHHHHHHhCH--------HHHHHHHHcC
Confidence 57776666653 122347666666666677777777775554 3666666665
No 285
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=40.79 E-value=21 Score=34.30 Aligned_cols=43 Identities=35% Similarity=0.779 Sum_probs=30.8
Q ss_pred cccCCCCCcc-c-hhcccCcccchhhhhhhcccC--CCCCCCccccccc
Q 000549 1114 CGICNDPPED-A-VVSICGHVFCNQCICERLTAD--DNQCPTRNCKIRL 1158 (1431)
Q Consensus 1114 C~iC~d~~e~-~-vit~CgH~fC~~Ci~~~l~~~--~~~Cp~~~C~~~l 1158 (1431)
|+.|..|..+ | +...|+|.|-..||.+++... ...||. |+...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPm--CR~~w 81 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPM--CRQPW 81 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCC--cCCee
Confidence 4555555444 3 456799999999999999864 567885 77654
No 286
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=10 Score=45.63 Aligned_cols=58 Identities=33% Similarity=0.580 Sum_probs=41.5
Q ss_pred ccccccCCCCCccc-----hhcccCcccchhhhhhhccc-CCCCCCCccccccccccchhhhhhhc
Q 000549 1111 LAICGICNDPPEDA-----VVSICGHVFCNQCICERLTA-DDNQCPTRNCKIRLSLSSVFSKATLN 1170 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~~-----vit~CgH~fC~~Ci~~~l~~-~~~~Cp~~~C~~~l~~~~~~s~~~l~ 1170 (1431)
...|++|.+.-+.+ +...|||.|-.+||+.|+.+ ...+||. |+.+-....++....++
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~--c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPL--CSGKATKRQIRPEYALR 67 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcc--cCChhHHHHHHHHHHHH
Confidence 35799999864433 45779999999999999953 2336774 88877766666544443
No 287
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=15 Score=45.05 Aligned_cols=53 Identities=38% Similarity=0.857 Sum_probs=38.5
Q ss_pred ccccccCC-CCCcc---chhcccCcccchhhhhhhcc-----cCCCCCCCccccccccccch
Q 000549 1111 LAICGICN-DPPED---AVVSICGHVFCNQCICERLT-----ADDNQCPTRNCKIRLSLSSV 1163 (1431)
Q Consensus 1111 ~~~C~iC~-d~~e~---~vit~CgH~fC~~Ci~~~l~-----~~~~~Cp~~~C~~~l~~~~~ 1163 (1431)
...|.+|. +.+.. ..+..|+|-||.+|+..++. +....||...|...+.....
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 35799998 33322 23577999999999998876 34568999888887765543
No 288
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=39.45 E-value=54 Score=38.55 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.8
Q ss_pred CcEEEcCCCCChHHHHHHHHH
Q 000549 688 GGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 688 GGILADEMGLGKTlqaIALI~ 708 (1431)
+-+|--+.|.|||..|-++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 467888999999998866653
No 289
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=39.23 E-value=1.3e+02 Score=39.84 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHH----HhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASL----KDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1350 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L----~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1350 (1431)
.+.+++|.+.-...+..+...+ ...|+++..++|+++..+|...++...+ +++.|+|.+.......+.+.....|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEEEchHHHhcccchhcccceE
Confidence 4678899988877766555544 4458999999999999999999999887 6788888775555445555544444
Q ss_pred EE
Q 000549 1351 LL 1352 (1431)
Q Consensus 1351 I~ 1352 (1431)
|+
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 43
No 290
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=38.40 E-value=1.4e+02 Score=39.44 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHcCCCCCCCcchhhhhhhhccccccccccccccc
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGL 742 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 742 (1431)
..|.++|..++.-+.+...... +..+|---.|.|||+.+.+++...
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~--~~~ll~Gl~gs~ka~lia~l~~~~-------------------------------- 56 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGE--KHQTLLGVTGSGKTFTMANVIARL-------------------------------- 56 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCC--CcEEEEcCCCcHHHHHHHHHHHHh--------------------------------
Confidence 4577899999988776543221 124566677999999876655221
Q ss_pred cccccccccccccCCCCCCccchhhhhhcCCCCCcEEEEeChh-hHHHHHHHHHHHhc
Q 000549 743 DLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTS-VLRQWAEELRNKVT 799 (1431)
Q Consensus 743 ~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~S-LL~QW~~EI~k~~~ 799 (1431)
.+++|||+|.. ...||.+++..+++
T Consensus 57 --------------------------------~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 57 --------------------------------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred --------------------------------CCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 13589999996 67899999998886
No 291
>PRK05580 primosome assembly protein PriA; Validated
Probab=38.02 E-value=1.7e+02 Score=38.87 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=57.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC-CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1353 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1353 (1431)
.+.++||.+.-......+.+.|++. |+....++|+++..+|.+...+... ++++|+|.+..+. =+.+..-..||+=
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~-g~~~IVVgTrsal--~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR-GEAKVVIGARSAL--FLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc-CCCCEEEeccHHh--cccccCCCEEEEE
Confidence 4678999999999988888888764 8889999999999999888888776 5678888654332 2344455555554
Q ss_pred c
Q 000549 1354 D 1354 (1431)
Q Consensus 1354 D 1354 (1431)
|
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 4
No 292
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=37.87 E-value=1e+02 Score=29.61 Aligned_cols=59 Identities=8% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000549 1275 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1334 (1431)
Q Consensus 1275 ~~~KvIVFSq------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S 1334 (1431)
...+|+||+. |=..-..+.+.|+..|+.|..++=....+.|+.+.+ ......+.++++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEEC
Confidence 4589999987 556778889999999999988875555444444443 3332333333433
No 293
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=37.85 E-value=16 Score=42.46 Aligned_cols=44 Identities=32% Similarity=0.731 Sum_probs=29.8
Q ss_pred hccccccCCCCCcc-chhcccCcccchhhhhhhcccCCCCCCCccccccc
Q 000549 1110 SLAICGICNDPPED-AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRL 1158 (1431)
Q Consensus 1110 ~~~~C~iC~d~~e~-~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l 1158 (1431)
.+.-|.-|..+..- ..+.+|.|+||.+|-...- +..||. |..++
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK~Cp~--C~d~V 133 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DKICPL--CDDRV 133 (389)
T ss_pred ceEeecccCCcceeeecccccchhhhhhhhhcCc---cccCcC--cccHH
Confidence 35679999876543 3568999999999975433 345663 65443
No 294
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=37.52 E-value=2.1e+02 Score=38.48 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALI 707 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI 707 (1431)
..|-+-|+.|+.-++... +=.+|---.|.|||.++-+++
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~------~~~il~G~aGTGKTtll~~i~ 389 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSG------DIAVVVGRAGTGKSTMLKAAR 389 (744)
T ss_pred CCCCHHHHHHHHHHhcCC------CEEEEEecCCCCHHHHHHHHH
Confidence 468899999999887421 125788889999998776655
No 295
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=37.45 E-value=1.2e+02 Score=36.85 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHc
Q 000549 669 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 710 (1431)
Q Consensus 669 Qk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~ 710 (1431)
|..++..+.........+..-++.-+.|+|||..+..++...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 444455544433332222456889999999999888777543
No 296
>PF04641 Rtf2: Rtf2 RING-finger
Probab=37.44 E-value=21 Score=41.42 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=35.5
Q ss_pred ccccccCCCCCcc----chhcccCcccchhhhhhhcccCCCCCCCccccccccccch
Q 000549 1111 LAICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1163 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~----~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~l~~~~~ 1163 (1431)
..+|+++...... ..+-+|||+|+..|+.+.- ....|| .|...+....+
T Consensus 113 ~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp--~c~~~f~~~Di 165 (260)
T PF04641_consen 113 RFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCP--VCGKPFTEEDI 165 (260)
T ss_pred eeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--cccccc--ccCCccccCCE
Confidence 4679999877632 2457899999999999984 455688 48777664443
No 297
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=37.29 E-value=86 Score=42.19 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=31.6
Q ss_pred cEEEEeChhhHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000549 777 GTLVVCPTSVLRQWAE-ELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 835 (1431)
Q Consensus 777 ~TLIVcP~SLL~QW~~-EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~~DVVITTY~~L~ 835 (1431)
..|.+.|--.+-|=+. ++..+. .+-.+.|--|.|.. .......+-++.|.|-+...
T Consensus 271 ~~llilp~vsiv~Ek~~~l~~~~-~~~G~~ve~y~g~~--~p~~~~k~~sv~i~tiEkan 327 (1008)
T KOG0950|consen 271 NVLLILPYVSIVQEKISALSPFS-IDLGFPVEEYAGRF--PPEKRRKRESVAIATIEKAN 327 (1008)
T ss_pred ceeEecceeehhHHHHhhhhhhc-cccCCcchhhcccC--CCCCcccceeeeeeehHhhH
Confidence 3677888765554443 343333 34567777787643 22233345567888776554
No 298
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=37.11 E-value=1.3e+02 Score=27.08 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=40.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEee
Q 000549 1278 KAIVFS-QWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMS 1334 (1431)
Q Consensus 1278 KvIVFS-q~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~S 1334 (1431)
|+.||+ .+=.....+...|++.++.|..++-......++++++.......+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 466776 344567788888999999999888887777777776666553245555544
No 299
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.78 E-value=1.8e+02 Score=37.33 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=56.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC-CCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLL 1353 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~-gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~l 1353 (1431)
.+.++||.+........+.+.|++. |..+..++|.++..+|.++..+-.. ++..|+|.+..+. =+-+.....||+=
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~-g~~~IVVGTrsal--f~p~~~l~lIIVD 100 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN-GEILVVIGTRSAL--FLPFKNLGLIIVD 100 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc-CCCCEEECChHHH--cCcccCCCEEEEE
Confidence 4678999999999888888888764 7888999999999999888777665 6677877554332 2234444555544
Q ss_pred c
Q 000549 1354 D 1354 (1431)
Q Consensus 1354 D 1354 (1431)
|
T Consensus 101 E 101 (505)
T TIGR00595 101 E 101 (505)
T ss_pred C
Confidence 3
No 300
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=36.64 E-value=1.5e+02 Score=41.19 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=35.9
Q ss_pred CcEEEEeChhhH-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhhh
Q 000549 776 AGTLVVCPTSVL-----RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVS 835 (1431)
Q Consensus 776 ~~TLIVcP~SLL-----~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~~DVVITTY~~L~ 835 (1431)
+...-+.|...+ +-|..-+.+- ..+.+....| .+..+.+.+.+.+|+|.|.+.+.
T Consensus 1187 ~~~vyi~p~~~i~~~~~~~w~~~f~~~----~G~~~~~l~g-e~s~~lkl~~~~~vii~tpe~~d 1246 (1674)
T KOG0951|consen 1187 GRAVYIAPLEEIADEQYRDWEKKFSKL----LGLRIVKLTG-ETSLDLKLLQKGQVIISTPEQWD 1246 (1674)
T ss_pred eEEEEecchHHHHHHHHHHHHHhhccc----cCceEEecCC-ccccchHHhhhcceEEechhHHH
Confidence 346788888754 3465555432 3455555544 45556677889999999987764
No 301
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=36.52 E-value=1.1e+02 Score=30.08 Aligned_cols=58 Identities=7% Similarity=-0.016 Sum_probs=40.8
Q ss_pred CCCeEEEEcc------cHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEE
Q 000549 1275 GGEKAIVFSQ------WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMI 1332 (1431)
Q Consensus 1275 ~~~KvIVFSq------~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL 1332 (1431)
...+|+||+. |=.....+.+.|+..|++|..++=....+.|+.+.+......-+.|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 5689999975 445677888899999999988876555666666655544433345555
No 302
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=36.52 E-value=65 Score=40.87 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHHhhc-----cCCCCCCcEEEcCCCCChHHHHHHHHH
Q 000549 665 LLRHQRIALSWMVQKET-----SSLHCSGGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 665 L~phQk~al~wMl~rE~-----~~~~~~GGILADEMGLGKTlqaIALI~ 708 (1431)
.....++++.|.+.+-. ....++|.||.-..|.|||+.|-|+..
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 45677888888887654 233557899999999999999877764
No 303
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.95 E-value=17 Score=41.04 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=30.5
Q ss_pred cccccCCCCCcc----chhcccCcccchhhhhhhcccCCCCCC
Q 000549 1112 AICGICNDPPED----AVVSICGHVFCNQCICERLTADDNQCP 1150 (1431)
Q Consensus 1112 ~~C~iC~d~~e~----~vit~CgH~fC~~Ci~~~l~~~~~~Cp 1150 (1431)
.+|++|-+...+ +++.+|||++|.+|++..+..|- .||
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~p 263 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDP 263 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-ccc
Confidence 579999887654 47899999999999999887663 455
No 304
>PRK08084 DNA replication initiation factor; Provisional
Probab=35.68 E-value=2.6e+02 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=21.9
Q ss_pred cEEEEcCccccCChhh---HHHHHHHhc-cc-CcEEEEEcc
Q 000549 906 FRVVLDEAQSIKNHRT---QVARACWGL-RA-KRRWCLSGT 941 (1431)
Q Consensus 906 ~rVILDEAH~IKN~~T---~~skal~~L-~a-k~RwlLTGT 941 (1431)
++|||||+|.+..... .....+..+ .. +.++++||+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 5799999999865321 122233333 23 347899987
No 305
>PF13173 AAA_14: AAA domain
Probab=35.64 E-value=39 Score=34.45 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=25.1
Q ss_pred cEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCC
Q 000549 906 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 945 (1431)
Q Consensus 906 ~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN 945 (1431)
.+|||||+|++.+...... .+..-..+.++++||.-...
T Consensus 63 ~~i~iDEiq~~~~~~~~lk-~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALK-FLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred cEEEEehhhhhccHHHHHH-HHHHhccCceEEEEccchHH
Confidence 4699999999976443322 22222245799999986443
No 306
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.16 E-value=2.5e+02 Score=36.14 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 667 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 667 phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
+|-...+..++...+- ...-|+.-..|.|||..|..+...
T Consensus 22 ~~v~~~L~~~i~~~~~---~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 22 EHVVRALTNALEQQRL---HHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHHHHHHHHHHHcCCC---CEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555555543221 133478999999999887666543
No 307
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.99 E-value=16 Score=41.84 Aligned_cols=52 Identities=33% Similarity=0.767 Sum_probs=37.8
Q ss_pred cccccCCCCC-----ccch-----hcccCcccchhhhhhhc-ccCCCCCCCccccccccccchhh
Q 000549 1112 AICGICNDPP-----EDAV-----VSICGHVFCNQCICERL-TADDNQCPTRNCKIRLSLSSVFS 1165 (1431)
Q Consensus 1112 ~~C~iC~d~~-----e~~v-----it~CgH~fC~~Ci~~~l-~~~~~~Cp~~~C~~~l~~~~~~s 1165 (1431)
..|.+|.... ++.+ -..|+|+|=.-||..+. -+....||. |+.++....+|+
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPY--CKekVdl~rmfs 287 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPY--CKEKVDLKRMFS 287 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCch--HHHHhhHhhhcc
Confidence 4588887542 2223 26799999999999985 556778996 998887766663
No 308
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=33.74 E-value=1.1e+02 Score=42.00 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=62.4
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE----Ec----CCCCcChHHHHHHhhhccCCCC
Q 000549 1305 RLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL----LD----LWWNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1305 rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~----lD----p~WNP~~e~QAIGRvhRIGQtr 1376 (1431)
.-++++=+.-|..+=.-|+. +-++|++. |...+.|+|+.+=+.|+- +| -|-+|.-..|--||++|-|+..
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~-GLvkvvFa-TeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQE-GLVKVVFA-TETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhccccchHHHHHHHHHHhc-cceeEEee-hhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 45788888999999999998 88999985 599999999986554432 22 2457889999999999999998
Q ss_pred cEEEEEEEeC
Q 000549 1377 PVSVLRLTVK 1386 (1431)
Q Consensus 1377 ~V~VyrLi~k 1386 (1431)
.-+|......
T Consensus 527 ~G~vI~~~~~ 536 (1041)
T COG4581 527 LGTVIVIEPP 536 (1041)
T ss_pred cceEEEecCC
Confidence 8666544333
No 309
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.50 E-value=4e+02 Score=34.05 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHH
Q 000549 668 HQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 668 hQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~ 708 (1431)
|-.+.+..++...+ .+..-||.-..|.|||-.|..+..
T Consensus 20 ~vv~~L~~a~~~~r---i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 20 VLVRILRNAFTLNK---IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHHHHHHHHHcCC---CCceEEEECCCCccHHHHHHHHHH
Confidence 44444444443322 234578999999999988766553
No 310
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.86 E-value=5.2e+02 Score=34.02 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 667 RHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 667 phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
+|=+.-+..++...+ ....-||.-..|.|||..|..|+..
T Consensus 22 e~v~~~L~~ai~~~r---i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 22 ETVKAILSRAAQENR---VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHHHHHHHHHHcCC---CCceEEEECCCCCCHHHHHHHHHHh
Confidence 344445555554322 1234567999999999988777644
No 311
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.35 E-value=56 Score=43.51 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 664 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 664 ~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
++||.|++....+.+-.... ..++|=-.+|.|||+.+|+-.++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~---~~~llEsPTGtGKTlslL~~aL~ 52 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG---DEAILEMPSGTGKTISLLSLILA 52 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC---CceEEeCCCCCCccHHHHHHHHH
Confidence 47999999888877655432 44788889999999999877665
No 312
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=31.46 E-value=72 Score=37.63 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.2
Q ss_pred ccCCCEEEEechhhhc
Q 000549 821 LAKFDVVITTYSIVSM 836 (1431)
Q Consensus 821 L~~~DVVITTY~~L~~ 836 (1431)
+..+||||++|..|..
T Consensus 209 ~~~Adivi~ny~yll~ 224 (289)
T smart00488 209 IEFANVVVLPYQYLLD 224 (289)
T ss_pred hhcCCEEEECHHHHhc
Confidence 4678999999998863
No 313
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=31.46 E-value=72 Score=37.63 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.2
Q ss_pred ccCCCEEEEechhhhc
Q 000549 821 LAKFDVVITTYSIVSM 836 (1431)
Q Consensus 821 L~~~DVVITTY~~L~~ 836 (1431)
+..+||||++|..|..
T Consensus 209 ~~~Adivi~ny~yll~ 224 (289)
T smart00489 209 IEFANVVVLPYQYLLD 224 (289)
T ss_pred hhcCCEEEECHHHHhc
Confidence 4678999999998863
No 314
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=30.89 E-value=6.1e+02 Score=33.30 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.5
Q ss_pred CCcEEEcCCCCChHHHHHHHHHH
Q 000549 687 SGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 687 ~GGILADEMGLGKTlqaIALI~~ 709 (1431)
..-|+.-..|.|||..|.+++..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999998887654
No 315
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=30.78 E-value=81 Score=42.83 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=39.7
Q ss_pred CCcEEEEeChh-hHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechhh
Q 000549 775 AAGTLVVCPTS-VLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIV 834 (1431)
Q Consensus 775 ~~~TLIVcP~S-LL~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~~DVVITTY~~L 834 (1431)
.+.+.+|.|.. |+.--.+.+.+....+ .++++-..|..+.. .......+++|||.+..
T Consensus 973 ~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd-~~~v~~~~~~ittpek~ 1031 (1230)
T KOG0952|consen 973 GSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPD-VKAVREADIVITTPEKW 1031 (1230)
T ss_pred CccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCC-hhheecCceEEcccccc
Confidence 35689999975 5543333334443323 68888888876544 77788999999998765
No 316
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=30.60 E-value=38 Score=40.41 Aligned_cols=47 Identities=28% Similarity=0.580 Sum_probs=33.8
Q ss_pred hhhccccccCCCCCcc-------------chhcccCcccchhhhhhhcccCCCCCCCcccccc
Q 000549 1108 EASLAICGICNDPPED-------------AVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1157 (1431)
Q Consensus 1108 e~~~~~C~iC~d~~e~-------------~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~ 1157 (1431)
-.+...|.||.|..-+ |--.+|||++=..|+..|+... ..||- |+..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPI--Cr~p 343 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPI--CRRP 343 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCc--ccCc
Confidence 4456789999986321 2457899999999999988654 35773 6655
No 317
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.40 E-value=17 Score=42.08 Aligned_cols=39 Identities=41% Similarity=1.015 Sum_probs=29.7
Q ss_pred cccccCCCCCccchhcccCccc-chhhhhhhcccCCCCCCCcccccc
Q 000549 1112 AICGICNDPPEDAVVSICGHVF-CNQCICERLTADDNQCPTRNCKIR 1157 (1431)
Q Consensus 1112 ~~C~iC~d~~e~~vit~CgH~f-C~~Ci~~~l~~~~~~Cp~~~C~~~ 1157 (1431)
..|.||+|.|.+=++..|||.. |.+|=... +-|| .|+..
T Consensus 301 ~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCP--ICRqy 340 (350)
T KOG4275|consen 301 RLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECP--ICRQY 340 (350)
T ss_pred HHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCc--hHHHH
Confidence 4599999999999999999977 88875332 2566 46544
No 318
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=30.38 E-value=2e+02 Score=37.81 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=53.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHH----hCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLK----DSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1350 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~----~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1350 (1431)
.+.+++|-+.....+..+.+.++ ..|+++..++|+++.++|..+++...+ +++.|+|.+....-..+.+.....|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEEEecHHHHhccccccccceE
Confidence 45678888887777666655554 448999999999999999999988876 6778888665444444444444433
Q ss_pred E
Q 000549 1351 L 1351 (1431)
Q Consensus 1351 I 1351 (1431)
|
T Consensus 362 V 362 (630)
T TIGR00643 362 I 362 (630)
T ss_pred E
Confidence 3
No 319
>PF13245 AAA_19: Part of AAA domain
Probab=29.86 E-value=1.1e+02 Score=28.73 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=16.7
Q ss_pred cEEEcCCCCChHHHHHHHHHHc
Q 000549 689 GILADDQGLGKTISTIALILKE 710 (1431)
Q Consensus 689 GILADEMGLGKTlqaIALI~~~ 710 (1431)
.++---.|.|||-+++.++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3446678999998888888653
No 320
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=29.18 E-value=3.1e+02 Score=33.13 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHc
Q 000549 664 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 710 (1431)
Q Consensus 664 ~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~ 710 (1431)
++||||.....-|+++.+ .+..-++.-..|+|||..|.+++...
T Consensus 3 ~~yPWl~~~~~~~~~~~r---~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGR---HPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCC---cceeeeeECCCCCCHHHHHHHHHHHH
Confidence 469999999998887733 22445678899999999998887654
No 321
>CHL00181 cbbX CbbX; Provisional
Probab=28.56 E-value=1.1e+02 Score=36.10 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred cEEEcCCCCChHHHHHHHHH
Q 000549 689 GILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 689 GILADEMGLGKTlqaIALI~ 708 (1431)
-+|-=..|.|||..|-++..
T Consensus 62 ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47889999999998877753
No 322
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=38 Score=42.49 Aligned_cols=51 Identities=27% Similarity=0.660 Sum_probs=39.4
Q ss_pred ccccccCCCCCcc-chhcccCcccchhhhhhhcccC-----C--CCCCCcccccccccc
Q 000549 1111 LAICGICNDPPED-AVVSICGHVFCNQCICERLTAD-----D--NQCPTRNCKIRLSLS 1161 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~-~vit~CgH~fC~~Ci~~~l~~~-----~--~~Cp~~~C~~~l~~~ 1161 (1431)
...|.+|.+.... .+...|+|.||..|+..+++.. . .+||...|......+
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 3679999988775 6667899999999999987652 1 368998998766543
No 323
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=27.34 E-value=2.3e+02 Score=35.65 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=16.0
Q ss_pred CCcEEEcCCCCChHHHHHHHH
Q 000549 687 SGGILADDQGLGKTISTIALI 707 (1431)
Q Consensus 687 ~GGILADEMGLGKTlqaIALI 707 (1431)
.+-+|--+.|+|||-.+-|+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~ 162 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAK 162 (450)
T ss_pred CceEEECCCCCcHHHHHHHHH
Confidence 346788999999997665554
No 324
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=26.64 E-value=3.5e+02 Score=37.02 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=32.5
Q ss_pred cCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHc
Q 000549 662 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 710 (1431)
Q Consensus 662 ~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~ 710 (1431)
+.|-+.++..-+....+.. =-++.-|.|-|||.|.--+|+..
T Consensus 171 ~LPa~~~r~~Il~~i~~~q-------VvvIsGeTGcGKTTQvpQfiLd~ 212 (924)
T KOG0920|consen 171 SLPAYKMRDTILDAIEENQ-------VVVISGETGCGKTTQVPQFILDE 212 (924)
T ss_pred hCccHHHHHHHHHHHHhCc-------eEEEeCCCCCCchhhhhHHHHHH
Confidence 4566778888887776442 26889999999999999998753
No 325
>PLN03025 replication factor C subunit; Provisional
Probab=24.95 E-value=1.2e+02 Score=36.16 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=34.2
Q ss_pred CccEEEEcCccccCChhhH-HHHHHHhcccCcEEEEEcccCCCChHHHHhhhhccccCCc
Q 000549 904 GWFRVVLDEAQSIKNHRTQ-VARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 962 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~-~skal~~L~ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 962 (1431)
.|..|||||+|.+-..... ..+.+.......+++|+.++...-+..|-+-...++..++
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 4789999999998532211 1122222245567888888766555556555444444333
No 326
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=24.80 E-value=10 Score=51.05 Aligned_cols=80 Identities=20% Similarity=0.166 Sum_probs=57.7
Q ss_pred EEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEEEcCCCC
Q 000549 1279 AIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWN 1358 (1431)
Q Consensus 1279 vIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~lDp~WN 1358 (1431)
+++|+-...+..++...+ ...+.+...+...++.+|... +....+.+|.+|..+...+.++++|+
T Consensus 445 ~~~~~v~itty~~l~~~~--------~~~~~l~~~~~~~~v~DEa~~-------ikn~~s~~~~~l~~~~~~~~~~LtgT 509 (866)
T COG0553 445 VIIFDVVITTYELLRRFL--------VDHGGLKKIEWDRVVLDEAHR-------IKNDQSSEGKALQFLKALNRLDLTGT 509 (866)
T ss_pred cceeeEEechHHHHHHhh--------hhHHHHhhceeeeeehhhHHH-------HhhhhhHHHHHHHHHhhcceeeCCCC
Confidence 788999999999888854 111222222333333333321 34577889999999999999999999
Q ss_pred cChHHHHHHhhhccCCC
Q 000549 1359 PTTEDQAIDRAHRIGQT 1375 (1431)
Q Consensus 1359 P~~e~QAIGRvhRIGQt 1375 (1431)
| .+|+++|.++++|.
T Consensus 510 P--len~l~eL~sl~~~ 524 (866)
T COG0553 510 P--LENRLGELWSLLQE 524 (866)
T ss_pred h--HhhhHHHHHHHHHH
Confidence 9 79999999999995
No 327
>PRK11054 helD DNA helicase IV; Provisional
Probab=24.56 E-value=1.3e+02 Score=39.95 Aligned_cols=38 Identities=32% Similarity=0.099 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 663 VPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 663 ~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
.+|-+-|++||..-. . .-.|+|= .|.|||.++++-+++
T Consensus 195 ~~L~~~Q~~av~~~~----~----~~lV~ag-aGSGKT~vl~~r~ay 232 (684)
T PRK11054 195 SPLNPSQARAVVNGE----D----SLLVLAG-AGSGKTSVLVARAGW 232 (684)
T ss_pred CCCCHHHHHHHhCCC----C----CeEEEEe-CCCCHHHHHHHHHHH
Confidence 468999999996432 1 1134554 799999999888765
No 328
>PHA00673 acetyltransferase domain containing protein
Probab=24.42 E-value=1.2e+02 Score=32.71 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=35.7
Q ss_pred ccEEEEcCccccCChhhHHHHHHHhc---ccCcEEEEEcccCCCChH
Q 000549 905 WFRVVLDEAQSIKNHRTQVARACWGL---RAKRRWCLSGTPIQNAID 948 (1431)
Q Consensus 905 W~rVILDEAH~IKN~~T~~skal~~L---~ak~RwlLTGTPIqN~l~ 948 (1431)
.+-|.+++.|+=+...+...+.+... +.-++|-+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 45699999999888887777766554 566899999999999865
No 329
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=23.93 E-value=60 Score=39.39 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=27.9
Q ss_pred cEEEEcCccccCChhhHHHHHHHhcccCcEEEEEcccCCC
Q 000549 906 FRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQN 945 (1431)
Q Consensus 906 ~rVILDEAH~IKN~~T~~skal~~L~ak~RwlLTGTPIqN 945 (1431)
.+|||||||++--+ ..--.+.+.-...++.|||-|.|-
T Consensus 353 ~FiIIDEaQNLTph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 353 SFIIIDEAQNLTPH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ceEEEehhhccCHH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 47999999998543 333345556778899999998764
No 330
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=23.76 E-value=37 Score=41.78 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=27.4
Q ss_pred cCcEEEEEcccCCCChHHHHhhhhccccCCc
Q 000549 932 AKRRWCLSGTPIQNAIDDLYSYFRFLRYDPF 962 (1431)
Q Consensus 932 ak~RwlLTGTPIqN~l~DLyslL~FL~p~~f 962 (1431)
.++..++||||+.|.+.++|++.++|.++.+
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 4667899999999999999999999988754
No 331
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.73 E-value=1.9e+02 Score=27.23 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=29.2
Q ss_pred EEEEeChhh-HHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEech
Q 000549 778 TLVVCPTSV-LRQ-WAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYS 832 (1431)
Q Consensus 778 TLIVcP~SL-L~Q-W~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~~DVVITTY~ 832 (1431)
+|||||... ..+ -+..++++++..+-. ..+-+..-.. ..+..+|++|||-.
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~i~-~~~~~~~~~~---~~~~~~DlIisT~~ 54 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELGIE-AEVEHTDLGS---AKASSADIIVTSKD 54 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCCc-EEEEEecccc---cCCCCCCEEEEchh
Confidence 699999975 333 445777777633322 2222211111 12568999999975
No 332
>PHA03096 p28-like protein; Provisional
Probab=23.65 E-value=37 Score=40.01 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=27.1
Q ss_pred cccccCCCCCc--------cchhcccCcccchhhhhhhcccC
Q 000549 1112 AICGICNDPPE--------DAVVSICGHVFCNQCICERLTAD 1145 (1431)
Q Consensus 1112 ~~C~iC~d~~e--------~~vit~CgH~fC~~Ci~~~l~~~ 1145 (1431)
.+|.+|++... ..+++.|.|.||..|+..|....
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~ 220 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTES 220 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhh
Confidence 78999998642 23678899999999999887553
No 333
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=23.55 E-value=1.5e+02 Score=28.23 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=32.1
Q ss_pred cEEEEeChhh-H-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechh
Q 000549 777 GTLVVCPTSV-L-RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 833 (1431)
Q Consensus 777 ~TLIVcP~SL-L-~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~~DVVITTY~~ 833 (1431)
.+|||||..+ . ..-+..|+++++.. .+.+.+-+.....-.. ...++|+||||-..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~-~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKEN-GIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHC-CCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 3799999975 3 34677788877532 3333332222111111 35689999999754
No 334
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=23.40 E-value=2.7e+02 Score=38.55 Aligned_cols=48 Identities=10% Similarity=0.033 Sum_probs=34.1
Q ss_pred CccEEEeeccccccccCccccCEEEEEcCCCCcChHHHHHHhhhccCCCCc
Q 000549 1327 EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRP 1377 (1431)
Q Consensus 1327 ~v~VLL~StkAGg~GLNLq~An~VI~lDp~WNP~~e~QAIGRvhRIGQtr~ 1377 (1431)
...++|++|.....|+++-. +.+| .||. --....|+.||+.|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~df-d~~~-~~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHDY-DWAI-ADPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEecccC-Ceee-eccC-cHHHHHHHhhcccccccCCC
Confidence 35567779999999999863 3333 3332 23577899999999998654
No 335
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.39 E-value=60 Score=40.40 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=36.9
Q ss_pred ccCccEEEEcCccccCChhhHHHHHHHhc-------ccC-cEEEEEcccCCCChHHHHhhhhccc
Q 000549 902 KVGWFRVVLDEAQSIKNHRTQVARACWGL-------RAK-RRWCLSGTPIQNAIDDLYSYFRFLR 958 (1431)
Q Consensus 902 ~i~W~rVILDEAH~IKN~~T~~skal~~L-------~ak-~RwlLTGTPIqN~l~DLyslL~FL~ 958 (1431)
--.|..+|||||| .+|..+..+..| +.. ..+.+|+|-.-.++...|+-.-+|.
T Consensus 157 l~~y~viiLDeah----ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~ 217 (699)
T KOG0925|consen 157 LGRYGVIILDEAH----ERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLA 217 (699)
T ss_pred cccccEEEechhh----hhhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeee
Confidence 3469999999999 456666655554 222 4578999987777777776555553
No 336
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.25 E-value=42 Score=40.35 Aligned_cols=46 Identities=35% Similarity=0.913 Sum_probs=32.4
Q ss_pred ccccccCCCCCcc--c--hhcccCcccchhhhhhhcccCCC--CCCCccccccc
Q 000549 1111 LAICGICNDPPED--A--VVSICGHVFCNQCICERLTADDN--QCPTRNCKIRL 1158 (1431)
Q Consensus 1111 ~~~C~iC~d~~e~--~--vit~CgH~fC~~Ci~~~l~~~~~--~Cp~~~C~~~l 1158 (1431)
.++|.||.+.-.. . -+..|||+|=..|+-.|+..+.. .||- |+.++
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpi--c~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPI--CQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCc--eeecc
Confidence 3789999764322 2 35679999999999999877554 5773 66333
No 337
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=23.14 E-value=1.3e+02 Score=37.17 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=53.3
Q ss_pred cCCCeEEEEcc-cHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEEEE
Q 000549 1274 LGGEKAIVFSQ-WTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLL 1352 (1431)
Q Consensus 1274 ~~~~KvIVFSq-~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~VI~ 1352 (1431)
.+|.++|+... |-.+..+++..|++.||.+..++.....+..+++ .. ++. .+|+
T Consensus 100 ~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~----~~-~~t--------------------k~v~ 154 (396)
T COG0626 100 KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAI----KE-PNT--------------------KLVF 154 (396)
T ss_pred CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHh----cc-cCc--------------------eEEE
Confidence 36788887776 7888899999999999998888777543333222 21 233 3556
Q ss_pred EcCCCCcChHHHHHHhhhccCCCC
Q 000549 1353 LDLWWNPTTEDQAIDRAHRIGQTR 1376 (1431)
Q Consensus 1353 lDp~WNP~~e~QAIGRvhRIGQtr 1376 (1431)
++.+-||..+.+=|.++-|+-...
T Consensus 155 lEtPsNP~l~v~DI~~i~~~A~~~ 178 (396)
T COG0626 155 LETPSNPLLEVPDIPAIARLAKAY 178 (396)
T ss_pred EeCCCCcccccccHHHHHHHHHhc
Confidence 788888887777776666665444
No 338
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=22.94 E-value=1e+03 Score=31.04 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.6
Q ss_pred cEEEcCCCCChHHHHHHHHHH
Q 000549 689 GILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 689 GILADEMGLGKTlqaIALI~~ 709 (1431)
-|+.-.-|.|||..+-.+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467999999999988666533
No 339
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=22.93 E-value=37 Score=44.47 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=33.1
Q ss_pred CCcccccccCCccccCccEEEEcCccccCChhhH---------------HHHHHHhcccCcEEEEEcccC
Q 000549 889 DGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQ---------------VARACWGLRAKRRWCLSGTPI 943 (1431)
Q Consensus 889 ~~~~~~~~~~pL~~i~W~rVILDEAH~IKN~~T~---------------~skal~~L~ak~RwlLTGTPI 943 (1431)
|+.+++.+...+.--.|..|||||||. |+-+|. +++.-++++.-..++||||--
T Consensus 357 DGVLLrEi~~DflL~kYSvIIlDEAHE-RSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 357 DGVLLREIENDFLLTKYSVIILDEAHE-RSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred chHHHHHHHHhHhhhhceeEEechhhh-ccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE
Confidence 455555566666677889999999994 222222 122222223446799999973
No 340
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.67 E-value=48 Score=39.08 Aligned_cols=45 Identities=31% Similarity=0.710 Sum_probs=35.4
Q ss_pred ccccccCCCCCc------cchhcccCcccchhhhhhhcccCCCCCCCcccccc
Q 000549 1111 LAICGICNDPPE------DAVVSICGHVFCNQCICERLTADDNQCPTRNCKIR 1157 (1431)
Q Consensus 1111 ~~~C~iC~d~~e------~~vit~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~ 1157 (1431)
...|.+|++.-. .|.+..|||.+|..|+...+......|| .|+..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cp--fcR~~ 53 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCP--FCRET 53 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeecc--CCCCc
Confidence 357999987532 3566779999999999999998888885 56655
No 341
>KOG3629 consensus Guanine-nucleotide releasing factor [Signal transduction mechanisms]
Probab=22.38 E-value=4.3e+02 Score=33.62 Aligned_cols=76 Identities=22% Similarity=0.131 Sum_probs=41.3
Q ss_pred HHHhhhccccCCCCCCCCCCCcccc-----------CCCccccccccCCCCcccccCCCcccccccccccCCCccccCC-
Q 000549 31 TLLGILEEEKQPDRVKSSPGDLSLR-----------NLSQDELVQDVGSHSNLQLQSGFKGDMRDIATYPLYGLEISGA- 98 (1431)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 98 (1431)
+|.--+++|++++.+.-+| -+.| |..-.-++||+|--.- |..++-.+..--++..|-++++
T Consensus 463 s~~~s~eiE~p~~~stp~p--~~~r~ss~~sq~~~i~~~~~~ptp~~~~~~p-----~~sG~s~~~~~~~~~t~~~~~a~ 535 (728)
T KOG3629|consen 463 SIIQSCEIEKPPMHSTPDP--SSSRISSTNSQIPSINTLNIGPTPDGGPPGP-----PLSGTSTLPRGSNTNTPSSANAS 535 (728)
T ss_pred HHHHhhcccCCCCCCCCCC--ccccchhhhhhhHHHhhccccCCCCCCCCCC-----CCCCCcCCCCCCCcCCcchhccc
Confidence 4444567766555444333 3333 3333456676665443 2233334555555566666666
Q ss_pred -CCCCCCCCCCCCCCC
Q 000549 99 -ESGGLGDSSSQLEPT 113 (1431)
Q Consensus 99 -~~~~~~~~~~~~~~~ 113 (1431)
+++..||.++---|+
T Consensus 536 w~s~s~~d~~~e~~~s 551 (728)
T KOG3629|consen 536 WTSGSEFDPSSEFPYS 551 (728)
T ss_pred CCCCCCcCccccCCcc
Confidence 788899998554333
No 342
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=22.35 E-value=4e+02 Score=35.13 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=19.2
Q ss_pred CCCcEEEEEeCCCCCCCcccccCCCEEEEechhhhc
Q 000549 801 KGSLSVLVYHGSSRTKDPCELAKFDVVITTYSIVSM 836 (1431)
Q Consensus 801 ~~~L~Vlvy~G~~r~k~~~~L~~~DVVITTY~~L~~ 836 (1431)
...++.+.|+|+.+.- ..+++|+.+|+.|..
T Consensus 306 Gk~~~~CPYY~SR~av-----p~aqlV~LPYQ~LL~ 336 (821)
T KOG1133|consen 306 GKELRGCPYYASRRAV-----PQAQLVTLPYQLLLH 336 (821)
T ss_pred hhhcCCCCchhhhhcc-----ccccEEeccHHHHHh
Confidence 3456667777765432 356777777777753
No 343
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=22.31 E-value=64 Score=27.87 Aligned_cols=42 Identities=24% Similarity=0.772 Sum_probs=20.7
Q ss_pred cccCCCCCcc--chhc--ccCcccchhhhhhhcccCCCCCCCcccccc
Q 000549 1114 CGICNDPPED--AVVS--ICGHVFCNQCICERLTADDNQCPTRNCKIR 1157 (1431)
Q Consensus 1114 C~iC~d~~e~--~vit--~CgH~fC~~Ci~~~l~~~~~~Cp~~~C~~~ 1157 (1431)
|++|.+.... ..+. +|++-+|..|....+......||. |+..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPg--Cr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPG--CREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TT--T--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCC--CCCC
Confidence 5677665522 1233 589999999999998877888994 7654
No 344
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.81 E-value=1.8e+02 Score=26.42 Aligned_cols=53 Identities=28% Similarity=0.381 Sum_probs=31.5
Q ss_pred EEEEeChhhH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccccCCCEEEEechh
Q 000549 778 TLVVCPTSVL--RQWAEELRNKVTSKGSLSVLVYHGSSRTKDPCELAKFDVVITTYSI 833 (1431)
Q Consensus 778 TLIVcP~SLL--~QW~~EI~k~~~~~~~L~Vlvy~G~~r~k~~~~L~~~DVVITTY~~ 833 (1431)
+|+|||...- ..-+..|++.++..+....+-+.+.... ....++|+||+|-..
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~dliitt~~~ 56 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEV---IDLADADLIISTVPL 56 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchh---hhcCCccEEEECCcc
Confidence 6899998853 3345677777764333233222222211 456789999999753
No 345
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=21.64 E-value=2.4e+02 Score=34.78 Aligned_cols=21 Identities=29% Similarity=0.115 Sum_probs=16.7
Q ss_pred CcEEEcCCCCChHHHHHHHHH
Q 000549 688 GGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 688 GGILADEMGLGKTlqaIALI~ 708 (1431)
.-+|--..|+|||..+-|+..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~ 158 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGN 158 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 357889999999988866653
No 346
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=21.16 E-value=5e+02 Score=31.44 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHc
Q 000549 664 PLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 710 (1431)
Q Consensus 664 ~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~ 710 (1431)
.+||||...-..+.+.......+..-+++-..|+||+..|.++....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 47888888777766654433223445688999999999999987654
No 347
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.71 E-value=3.6e+02 Score=35.81 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhC-C-CcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccc
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS-S-IQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKA 1337 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~-g-I~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkA 1337 (1431)
.|+.+||...-......+...|+.. | ..+++++..++..+|.+.-.+... ++.+|+|.+ ++
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~-G~~~IViGt-RS 249 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR-GQARVVVGT-RS 249 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC-CCCcEEEEc-ce
Confidence 5778999988888888888888764 4 679999999999999999888876 788888855 44
No 348
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=20.71 E-value=1.8e+02 Score=34.72 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcC-----CCccEEEee
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-----PEVSVMIMS 1334 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d-----~~v~VLL~S 1334 (1431)
.+++|||--.-..+---.+..|+.-||++.|+-|+...+--+++.+.|+++ ++++|.|++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 789999999999999999999999999999999998888888889998743 457777766
No 349
>PRK14974 cell division protein FtsY; Provisional
Probab=20.64 E-value=4.7e+02 Score=31.78 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=25.7
Q ss_pred CccEEEEcCccccCChhhHHHHHHHhc----ccC-cEEEEEcccCCCChHHH
Q 000549 904 GWFRVVLDEAQSIKNHRTQVARACWGL----RAK-RRWCLSGTPIQNAIDDL 950 (1431)
Q Consensus 904 ~W~rVILDEAH~IKN~~T~~skal~~L----~ak-~RwlLTGTPIqN~l~DL 950 (1431)
+.++||||.|++..+..... ..+..+ +.. ..+++++|.-++.+...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm-~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLM-DELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCCEEEEECCCccCCcHHHH-HHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 35789999999986543332 222322 333 34667776644444333
No 350
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.47 E-value=7.2e+02 Score=31.39 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=52.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccc
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAAS 1339 (1431)
Q Consensus 1276 ~~KvIVFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg 1339 (1431)
+..+||.+.....+.-....|...|+....+.|..+..++..++..... +.+++++++.....
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~-~~~~il~~TPe~l~ 113 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD-GKIKLLYVTPEKCS 113 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHc
Confidence 4578999999888777777888899999999999999988888888855 77899998876543
No 351
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=20.41 E-value=7.5e+02 Score=29.87 Aligned_cols=46 Identities=20% Similarity=0.099 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHHc
Q 000549 665 LLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKE 710 (1431)
Q Consensus 665 L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~~ 710 (1431)
+||||...-.-+.+.......+.+-++.-..|+||+..|.+++...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 5787776665555543332223445678899999999998887654
No 352
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=20.38 E-value=2.7e+02 Score=34.91 Aligned_cols=22 Identities=27% Similarity=0.123 Sum_probs=17.1
Q ss_pred CCcEEEcCCCCChHHHHHHHHH
Q 000549 687 SGGILADDQGLGKTISTIALIL 708 (1431)
Q Consensus 687 ~GGILADEMGLGKTlqaIALI~ 708 (1431)
..-+|--..|+|||..+-|+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~ 170 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN 170 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3467889999999988766653
No 353
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=20.30 E-value=2.7e+02 Score=29.75 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=41.7
Q ss_pred eEEEEccc-------HHHHHHHHHHHHhCCCcEEecCCCCCHHHHHHHHHHHhc----CCCccEEEe
Q 000549 1278 KAIVFSQW-------TKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNT----LPEVSVMIM 1333 (1431)
Q Consensus 1278 KvIVFSq~-------t~~LdlLe~~L~~~gI~~~rldGsms~~qR~~aI~~Fn~----d~~v~VLL~ 1333 (1431)
||+||+.. -..-..+..+|+..+|.|..+|=+|..+.|+++.+.... ..-++|+|-
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 57788876 345678888999999999999999998888887766543 223555553
No 354
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=20.28 E-value=2.5e+02 Score=36.94 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=33.6
Q ss_pred cCCCcHHHHHHHHHHHHhhccCCCCCCcEEEcCCCCChHHHHHHHHHH
Q 000549 662 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILK 709 (1431)
Q Consensus 662 ~~~L~phQk~al~wMl~rE~~~~~~~GGILADEMGLGKTlqaIALI~~ 709 (1431)
....|++|+..+.-+..-... ..++|+=-.+|.|||+..|+-++.
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~---~~~~~iEapTGtGKTl~yL~~al~ 57 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKG---GEGLLIEAPTGTGKTLAYLLPALA 57 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcC---CCcEEEECCCCccHHHHHHHHHHH
Confidence 346899999998888743332 134778888999999998877755
No 355
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=20.02 E-value=3.9e+02 Score=36.88 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=58.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHh----CCCcEEecCCCCCHHHHHHHHHHHhcCCCccEEEeeccccccccCccccCEE
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKD----SSIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHV 1350 (1431)
Q Consensus 1275 ~~~KvIVFSq~t~~LdlLe~~L~~----~gI~~~rldGsms~~qR~~aI~~Fn~d~~v~VLL~StkAGg~GLNLq~An~V 1350 (1431)
.+.+++|.+..+..+..+...+++ .++++..+.|.++..++.+.++.... +.+.|+|.+.......+.+..-..|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dIVIGTp~ll~~~v~f~~L~ll 577 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDILIGTHKLLQKDVKFKDLGLL 577 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceEEEchHHHhhCCCCcccCCEE
Confidence 457899999999888877776654 36788889999999999999999887 6788888776555555566555555
Q ss_pred EE
Q 000549 1351 LL 1352 (1431)
Q Consensus 1351 I~ 1352 (1431)
|+
T Consensus 578 VI 579 (926)
T TIGR00580 578 II 579 (926)
T ss_pred Ee
Confidence 54
Done!