Query 000549
Match_columns 1431
No_of_seqs 296 out of 2254
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 16:26:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000549.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_323-327//hhsearch_pdb/000549hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 716.3 18.6 608 518-1430 96-731 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 682.5 33.1 495 660-1431 51-570 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 633.8 35.3 462 657-1431 31-495 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 462.1 25.1 425 661-1405 150-633 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 376.3 30.7 465 662-1405 7-493 (494)
6 1z5z_A Helicase of the SNF2/RA 1.0 1 1 351.8 22.4 255 993-1431 11-266 (271)
7 2fwr_A DNA repair protein RAD2 1.0 1 1 342.7 18.8 379 662-1405 91-472 (472)
8 4a2w_A RIG-I, retinoic acid in 1.0 1 1 324.9 31.0 129 1275-1409 630-770 (936)
9 4a2q_A RIG-I, retinoic acid in 1.0 1 1 316.4 28.2 129 1275-1409 630-770 (797)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 310.1 25.3 129 1275-1409 389-529 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=716.27 Aligned_cols=608 Identities=24% Similarity=0.362 Sum_probs=439.2
Q ss_pred CCCCCHHCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC------CCCCHHHHHHCCCCC
Q ss_conf 2343020000000122112233---5779422135888776677999983898015896------565213542111235
Q 000549 518 ELDGVKEDMEAEIKTRSMASHL---LKLSPESIQSNSSDCKSHVDDEPDICILEDISQP------ARSNQSLVLGKTLSM 588 (1431)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~l---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~ 588 (1431)
.+.+.++..++.++.+..+.+. +..++|+++...++.+...+.-+++..+|+|-.. .......++.||-++
T Consensus 96 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~e~~~~~~e~~~~~~~~~~~veRii~~~~~~~~~~~~~~~yLvKW~~L 175 (800)
T 3mwy_W 96 QVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRL 175 (800)
T ss_dssp SCBTTHHHHHHHHHHTHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHTTTTCEEEECCCCCEECTTSCEECBCCEEETTS
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 34157999999998632778875189998788888756665420001113534689864113467898865999981578
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 64446656423699842223666889999999887778899987527999999985104899978799998766787478
Q 000549 589 NRSACSNHSVALGKPVVTSQHSSYSDYPGYPGVPLTGLGGMKSKASDERLILQVAMQGISQPNAEASAPDGVLAVPLLRH 668 (1431)
Q Consensus 589 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~der~~l~~~l~~l~~p~~e~~~P~g~l~v~LlpH 668 (1431)
++..|.|............+...|.........+.........+. .+ ... ...|+......|+||
T Consensus 176 ~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~------------~~--~~~-~~~p~~~~~~~Lr~y 240 (800)
T 3mwy_W 176 NYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRP------------RF--EKL-SVQPPFIKGGELRDF 240 (800)
T ss_dssp CSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCC------------CC--CCC-SSCCTTCCSSCCCTH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCC------------CC--CCC-CCCCCCCCCCCCCHH
T ss_conf 734264336344333319999999976313447751010345577------------64--002-569986579975899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999982206877877399817898769999999998099998876303455441045433444323564311234
Q 000549 669 QRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNGLDLVKQE 748 (1431)
Q Consensus 669 Q~~al~wMl~rE~~~~~~~GGILADEMGLGKTIsaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~k~~ 748 (1431)
|+.|+.||+..... .+||||||+||||||+++|++|......
T Consensus 241 Q~egv~~l~~~~~~---~~~~ILademGlGKT~~ai~~i~~l~~~----------------------------------- 282 (800)
T 3mwy_W 241 QLTGINWMAFLWSK---GDNGILADEMGLGKTVQTVAFISWLIFA----------------------------------- 282 (800)
T ss_dssp HHHHHHHHHHHHTT---TCCEEECCCTTSSTTHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHH-----------------------------------
T ss_conf 99999999998513---8998998278753299999999999986-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC----------
Q ss_conf 5433345899987530134320289998389995714299999999987158999389999589878881----------
Q 000549 749 SDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP---------- 818 (1431)
Q Consensus 749 ~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~kd~---------- 818 (1431)
....+++|||||.+++.||++|+.+|++ .+.+.+|+|..+.+..
T Consensus 283 -----------------------~~~~~~~LIV~P~sll~qW~~E~~~~~p---~~~v~~~~g~~~~r~~~~~~~~~~~~ 336 (800)
T 3mwy_W 283 -----------------------RRQNGPHIIVVPLSTMPAWLDTFEKWAP---DLNCICYMGNQKSRDTIREYEFYTNP 336 (800)
T ss_dssp -----------------------HSCCSCEEEECCTTTHHHHHHHHHHHST---TCCEEECCCSSHHHHHHHHHHSCSCC
T ss_pred -----------------------CCCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf -----------------------0779988999880389999999999779---96499982777778898887762263
Q ss_pred ----CCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----0015898999710224013798999981358988531179999653367666889999864466678999973100
Q 000549 819 ----CELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLD 894 (1431)
Q Consensus 819 ----~~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~k~K~~~~~~r~~~~~kk~~~~~~~~ 894 (1431)
....+++||||||+++.+..
T Consensus 337 ~~~~~~~~~~dvvitTy~~l~~~~-------------------------------------------------------- 360 (800)
T 3mwy_W 337 RAKGKKTMKFNVLLTTYEYILKDR-------------------------------------------------------- 360 (800)
T ss_dssp -----CCCCCSEEEECTTHHHHTH--------------------------------------------------------
T ss_pred CCCCCCCCCCCEEEECHHHHHHHH--------------------------------------------------------
T ss_conf 001344566788990699998649--------------------------------------------------------
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCC
Q ss_conf 01477555470099995764357844499999983003828999733588995778864100255774315889867336
Q 000549 895 IVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKV 974 (1431)
Q Consensus 895 ~~~~~L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~Ak~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~ 974 (1431)
..|..+.|.+||+||||++||..++.++++..+++.+||+|||||+||++.|||++++||.|+.|.....|.....
T Consensus 361 ---~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~- 436 (800)
T 3mwy_W 361 ---AELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ- 436 (800)
T ss_dssp ---HHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-
T ss_pred ---HHHHCCCCCEEEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC-
T ss_conf ---9983377325641344441471019999999752243897227857799999999999858663674344232223-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 78889534389999998564531011211489886579993799998049999999999999998999999997064410
Q 000549 975 PISKNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ 1054 (1431)
Q Consensus 975 pi~k~~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~ 1054 (1431)
..........|+.+++++|+||+|.++.. .||++.+.++.++|++.|+.+|..+.......+.... ..
T Consensus 437 --~~~~~~~~~~L~~~l~p~~lRR~k~dv~~-----~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-----~~ 504 (800)
T 3mwy_W 437 --DEEQEEYIHDLHRRIQPFILRRLKKDVEK-----SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-----KG 504 (800)
T ss_dssp --TTHHHHHHHHHHHTTGGGEEECCGGGGTT-----TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-------------
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCC-----CC
T ss_conf --14689999999999757775320876643-----1688279999707999999999999999999986103-----54
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 19999999999999706700002457404566489998416089999999986530012366799986311013584110
Q 000549 1055 NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 1134 (1431)
Q Consensus 1055 ~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~les~~~~C~iC~~~~e~~vit~CgH~fC 1134 (1431)
....++..+++||++|+||.++....... ...+..
T Consensus 505 ~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~--------~~~~~~------------------------------------- 539 (800)
T 3mwy_W 505 GHFSLLNIMNELKKASNHPYLFDNAEERV--------LQKFGD------------------------------------- 539 (800)
T ss_dssp --CTHHHHHHHHHHHHHCGGGSSSHHHHH--------CCCC---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCHHHHCCHHHHH--------HHHCCC-------------------------------------
T ss_conf 54469999999998735865423557899--------886156-------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 23464310148998888532233442210234310233246899999888888742235886778644537899999999
Q 000549 1135 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVL 1214 (1431)
Q Consensus 1135 ~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~~~~~SsKi~allelL 1214 (1431)
........ .......++|+..+.++|
T Consensus 540 ---------------------~~~~~~~~---------------------------------~~~l~~~s~K~~~L~~lL 565 (800)
T 3mwy_W 540 ---------------------GKMTRENV---------------------------------LRGLIMSSGKMVLLDQLL 565 (800)
T ss_dssp -----------------------CCSHHH---------------------------------HHHHHHTCHHHHHHHHHH
T ss_pred ---------------------CCCCHHHH---------------------------------HHHHHHCCHHHHHHHHHH
T ss_conf ---------------------65557788---------------------------------887664276999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 96127899865554322344788668999999889986433202568988320220101599739999166888999999
Q 000549 1215 QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEA 1294 (1431)
Q Consensus 1215 ~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSq~t~~LdlLe~ 1294 (1431)
..+. ..++|+||||||+.++++|+.
T Consensus 566 ~~~~-------------------------------------------------------~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 566 TRLK-------------------------------------------------------KDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp HHHT-------------------------------------------------------TTTCCEEEEESCHHHHHHHHH
T ss_pred HHHH-------------------------------------------------------HCCCEEEEEECHHHHHHHHHH
T ss_conf 9975-------------------------------------------------------279818999635999999999
Q ss_pred HHHHCCCCEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 9981799199238987999999999997059-995399961432123568554698999838999493889979320139
Q 000549 1295 SLKDSSIQYRRLDGTMSVFARDKAVKDFNTL-PEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1373 (1431)
Q Consensus 1295 ~L~~~gI~~~rldGsms~~eR~~~I~~Fn~d-~~v~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAIgRvhRIG 1373 (1431)
+|...|+++.+++|+|+..+|++++++|++. ....|+|+|+++||+||||+.|++||+||++|||..+.||+||+||+|
T Consensus 591 ~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 591 YLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIG 670 (800)
T ss_dssp HHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSS
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99867997899969999999999999960899982599974544567877601636899468788116899999988558
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHC
Q ss_conf 989599999994999999999999999999998818997676----344679999997432
Q 000549 1374 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGG----QQTRLTVDDLNYLFM 1430 (1431)
Q Consensus 1374 Qkk~V~V~rLi~kdTIEErIl~lq~kK~~l~~salg~d~~~~----~~~~lt~eDL~~LF~ 1430 (1431)
|+++|+||||++++|+|++|++++.+|..+..++++.....+ ....++.+||..|+.
T Consensus 671 Q~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~ 731 (800)
T 3mwy_W 671 QKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731 (800)
T ss_dssp CCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHS
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9863799998619989999999999988899999703756653211234789999999997
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=682.53 Aligned_cols=495 Identities=26% Similarity=0.390 Sum_probs=389.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 766787478999999999822068--778773998178987699999999980999988763034554410454334443
Q 000549 660 VLAVPLLRHQRIALSWMVQKETSS--LHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGI 737 (1431)
Q Consensus 660 ~l~v~LlpHQ~~al~wMl~rE~~~--~~~~GGILADEMGLGKTIsaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~ 737 (1431)
.+...|+|||++|+.||+....+. ...+||||||+||||||+++|++|.......
T Consensus 51 ~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------------- 107 (644)
T 1z3i_X 51 VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------------- 107 (644)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-----------------------
T ss_conf 640035199999999999842335445888759610787429999999999999748-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 23564311234543334589998753013432028999838999571429999999998715899938999958987888
Q 000549 738 QVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKD 817 (1431)
Q Consensus 738 ~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~kd 817 (1431)
+ ......+++|||||.+++.||++|+.+|++. .+.++.++|..+...
T Consensus 108 -----------~--------------------~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~--~~~~~~~~~g~~~~~ 154 (644)
T 1z3i_X 108 -----------P--------------------DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGG--RVQPVAIDGGSKDEI 154 (644)
T ss_dssp -----------T--------------------TSSCSCSCEEEEECHHHHHHHHHHHHHHHGG--GCCEEEECSSCHHHH
T ss_pred -----------C--------------------CCCCCCCCEEEEECHHHHHHHHHHHHHHCCC--CEEEEEEECCCHHHH
T ss_conf -----------6--------------------6567778579996589988799999997588--725999808988999
Q ss_pred CC----------CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10----------01589899971022401379899998135898853117999965336766688999986446667899
Q 000549 818 PC----------ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKG 887 (1431)
Q Consensus 818 ~~----------~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~k~K~~~~~~r~~~~~kk~ 887 (1431)
.. ....++|+||||+++..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~------------------------------------------------- 185 (644)
T 1z3i_X 155 DSKLVNFISQQGMRIPTPILIISYETFRLHA------------------------------------------------- 185 (644)
T ss_dssp HHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT-------------------------------------------------
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH-------------------------------------------------
T ss_conf 9999999873377778757996389987657-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 99731000147755547009999576435784449999998300382899973358899577886410025577431588
Q 000549 888 PDGLLLDIVAGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKS 967 (1431)
Q Consensus 888 ~~~~~~~~~~~~L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~Ak~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~ 967 (1431)
..|....|++||+||||+|||..++.++++..+++.+||+|||||+||++.|||++++||+|++|+....
T Consensus 186 ----------~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~ 255 (644)
T 1z3i_X 186 ----------EVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQE 255 (644)
T ss_dssp ----------TTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHH
T ss_pred ----------HHHHCCCCCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf ----------8750488657998786224780459999998555673799846734588999999998618876899999
Q ss_pred HHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 9867336788895------------3438999999856453101121148988657999379999804999999999999
Q 000549 968 FCSMIKVPISKNP------------VKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQL 1035 (1431)
Q Consensus 968 F~~~i~~pi~k~~------------~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~~~vv~v~lS~eEr~~Y~~L 1035 (1431)
|..+|..|+.++. ......|+.++.++|+||+|.++.. .||++.+.++.|+|++.|+++|+.+
T Consensus 256 F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~-----~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 256 FKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSK-----YLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp HHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGG-----TSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 99863261541677677888999999999999999889998710876764-----2798369999837998999999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99989999999970644101999999999999970670000245740456648999841608999999998653001236
Q 000549 1036 EINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICG 1115 (1431)
Q Consensus 1036 ~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~les~~~~C~ 1115 (1431)
....... ...........++..+++||++|+||.++..... .. +...
T Consensus 331 ~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~-----------~~-------------~~~~---- 377 (644)
T 1z3i_X 331 LKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCL-----------TG-------------EEGF---- 377 (644)
T ss_dssp HHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHH-----------HT-------------CTTC----
T ss_pred HHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH-----------CC-------------CCHH----
T ss_conf 9989999-----9876276214599999999999579998888874-----------15-------------4003----
Q ss_pred CCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67999863110135841102346431014899888853223344221023431023324689999988888874223588
Q 000549 1116 ICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAP 1195 (1431)
Q Consensus 1116 iC~~~~e~~vit~CgH~fC~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~i~~~~s~~~~~~~~ 1195 (1431)
+ .++ . ..+..+...
T Consensus 378 -------~------------~~~-----------------------~------------------~~~~~~~~~------ 391 (644)
T 1z3i_X 378 -------D------------GAL-----------------------D------------------LFPQNYSTK------ 391 (644)
T ss_dssp -------T------------TGG-----------------------G------------------TSCSSCCSS------
T ss_pred -------H------------HHH-----------------------H------------------HCCCCCCCC------
T ss_conf -------5------------577-----------------------6------------------454211100------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 67786445378999999999612789986555432234478866899999988998643320256898832022010159
Q 000549 1196 SCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLG 1275 (1431)
Q Consensus 1196 ~~~~~~~~SsKi~allelL~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~ 1275 (1431)
......++|+..+..++..+.. ..
T Consensus 392 --~~~~~~s~K~~~l~~ll~~~~~------------------------------------------------------~~ 415 (644)
T 1z3i_X 392 --AVEPQLSGKMLVLDYILAMTRT------------------------------------------------------TT 415 (644)
T ss_dssp --SCCGGGSHHHHHHHHHHHHHHH------------------------------------------------------HC
T ss_pred --CCCCCCCHHHHHHHHHHHHHHH------------------------------------------------------CC
T ss_conf --0570117489999999999864------------------------------------------------------69
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 9739999166888999999998179919923898799999999999705999-539996143212356855469899983
Q 000549 1276 GEKAIVFSQWTKMLDLLEASLKDSSIQYRRLDGTMSVFARDKAVKDFNTLPE-VSVMIMSLKAASLGLNMVAACHVLLLD 1354 (1431)
Q Consensus 1276 ~eKvIIFSq~t~~LdlLe~~L~~~gI~~~rldGsms~~eR~~~I~~Fn~d~~-v~VLLlSlkAGg~GLNLt~An~VI~lD 1354 (1431)
++|+||||+|+.++++|+..|...|+.+.+++|+|+.++|++++++|++++. ..|+|+|+++||+||||+.|++||+||
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 98799998059999999999997799789983999999999999996399999679998445566784652389899979
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 89994938899793201399895999999949999999999999999999988189976763446799999974329
Q 000549 1355 LWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1431 (1431)
Q Consensus 1355 p~WNPa~e~QAIgRvhRIGQkk~V~V~rLi~kdTIEErIl~lq~kK~~l~~salg~d~~~~~~~~lt~eDL~~LF~~ 1431 (1431)
+||||+.+.||+||+||+||+++|+||+|++++|+||+|+++|.+|+.++..+++++. .....++.+||+.||.+
T Consensus 496 ~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~--~~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 496 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ--DVERHFSLGELRELFSL 570 (644)
T ss_dssp CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSS--SCCCSSCHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC--HHHCCCCHHHHHHHHCC
T ss_conf 9998137999988403228987269999887988999999999999999999856860--54337899999998678
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=633.78 Aligned_cols=462 Identities=33% Similarity=0.519 Sum_probs=397.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 99876678747899999999982206877877399817898769999999998099998876303455441045433444
Q 000549 657 PDGVLAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNG 736 (1431)
Q Consensus 657 P~g~l~v~LlpHQ~~al~wMl~rE~~~~~~~GGILADEMGLGKTIsaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~ 736 (1431)
|.+ ++..|+|||++|+.||+..... .+||||||+||+|||+++++++.....
T Consensus 31 p~~-~~~~L~~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~ai~~i~~~~~------------------------ 82 (500)
T 1z63_A 31 PYN-IKANLRPYQIKGFSWMRFMNKL---GFGICLADDMGLGKTLQTIAVFSDAKK------------------------ 82 (500)
T ss_dssp CCS-CSSCCCHHHHHHHHHHHHHHHT---TCCEEECCCTTSCHHHHHHHHHHHHHH------------------------
T ss_pred CHH-HHCCCHHHHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHH------------------------
T ss_conf 833-2003369999999999997417---998899808997389999999998875------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 32356431123454333458999875301343202899983899957142999999999871589993899995898788
Q 000549 737 IQVNGLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRTK 816 (1431)
Q Consensus 737 ~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~k 816 (1431)
..+.+++|||||.+++.||.+|+.+|++ .+++.+++|....
T Consensus 83 -----------------------------------~~~~~~~LIv~P~~l~~qw~~e~~~~~~---~~~v~~~~g~~~~- 123 (500)
T 1z63_A 83 -----------------------------------ENELTPSLVICPLSVLKNWEEELSKFAP---HLRFAVFHEDRSK- 123 (500)
T ss_dssp -----------------------------------TTCCSSEEEEECSTTHHHHHHHHHHHCT---TSCEEECSSSTTS-
T ss_pred -----------------------------------CCCCCCEEEECCHHHHHHHHHHHHHHCC---CCEEEEEECCCHH-
T ss_conf -----------------------------------5899978999038999999999999779---9559997267021-
Q ss_pred CCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 81001589899971022401379899998135898853117999965336766688999986446667899997310001
Q 000549 817 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 896 (1431)
Q Consensus 817 d~~~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~k~K~~~~~~r~~~~~kk~~~~~~~~~~ 896 (1431)
..+..++|||+||+++..+.
T Consensus 124 --~~~~~~~ivi~t~~~l~~~~---------------------------------------------------------- 143 (500)
T 1z63_A 124 --IKLEDYDIILTTYAVLLRDT---------------------------------------------------------- 143 (500)
T ss_dssp --CCGGGSSEEEEEHHHHTTCH----------------------------------------------------------
T ss_pred --CCCCCCCEEEEEHHHHHCCC----------------------------------------------------------
T ss_conf --00357768996379972630----------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 47755547009999576435784449999998300382899973358899577886410025577431588986733678
Q 000549 897 AGPLAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 976 (1431)
Q Consensus 897 ~~~L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~Ak~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi 976 (1431)
.+....|++||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||+|++|..+..|...|..|+
T Consensus 144 --~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~ 221 (500)
T 1z63_A 144 --RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPI 221 (500)
T ss_dssp --HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHH
T ss_pred --HHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf --211787287998084101787689999999600471899746777799999999999858775799899999852511
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 88953438999999856453101121--1489886579993799998049999999999999998999999997064410
Q 000549 977 SKNPVKGYKKLQAVLKTIMLRRTKGT--LLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQ 1054 (1431)
Q Consensus 977 ~k~~~~~~~~L~~lL~~imLRRtK~d--v~dG~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~ 1054 (1431)
..+.......|+.++.++++||+|.+ +.. .||++.+..+++++++.|+.+|+.+.......+ .......
T Consensus 222 ~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~-----~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~----~~~~~~~ 292 (500)
T 1z63_A 222 KKGDNMAKEELKAIISPFILRRTKYDKAIIN-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIK 292 (500)
T ss_dssp HTTCHHHHHHHHHHHTTTEECCCTTCHHHHT-----TSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT----TTCCTHH
T ss_pred CCCCHHHHHHHHHHHHHHEEEECCCCCCHHH-----CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHCCC
T ss_conf 1466889999999976674550255424112-----299975899981899999999999999999999----8642321
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 19999999999999706700002457404566489998416089999999986530012366799986311013584110
Q 000549 1055 NYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFC 1134 (1431)
Q Consensus 1055 ~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~les~~~~C~iC~~~~e~~vit~CgH~fC 1134 (1431)
....++..++++|++|+||.++....
T Consensus 293 ~~~~~~~~l~~lr~~~~~p~l~~~~~------------------------------------------------------ 318 (500)
T 1z63_A 293 RKGMILSTLLKLKQIVDHPALLKGGE------------------------------------------------------ 318 (500)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHCSC------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCHHHHCCCC------------------------------------------------------
T ss_conf 06799999999998817998843852------------------------------------------------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 23464310148998888532233442210234310233246899999888888742235886778644537899999999
Q 000549 1135 NQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVL 1214 (1431)
Q Consensus 1135 ~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~~~~~SsKi~allelL 1214 (1431)
.....++|+..+.+++
T Consensus 319 ----------------------------------------------------------------~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 319 ----------------------------------------------------------------QSVRRSGKMIRTMEII 334 (500)
T ss_dssp ----------------------------------------------------------------CCSTTCHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CHHHCCHHHHHHHHHH
T ss_conf ----------------------------------------------------------------0111155299999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 96127899865554322344788668999999889986433202568988320220101599739999166888999999
Q 000549 1215 QSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEA 1294 (1431)
Q Consensus 1215 ~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSq~t~~LdlLe~ 1294 (1431)
..+.. .++|+|||++++.+++.|+.
T Consensus 335 ~~~~~-------------------------------------------------------~~~k~lvF~~~~~~~~~l~~ 359 (500)
T 1z63_A 335 EEALD-------------------------------------------------------EGDKIAIFTQFVDMGKIIRN 359 (500)
T ss_dssp HHHHT-------------------------------------------------------TTCCEEEECSCHHHHHHHHH
T ss_pred HHHHC-------------------------------------------------------CCCCEEEEEEHHHHHHHHHH
T ss_conf 99872-------------------------------------------------------68868999721889999999
Q ss_pred HHHHC-CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC
Q ss_conf 99817-99199238987999999999997059995399961432123568554698999838999493889979320139
Q 000549 1295 SLKDS-SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIG 1373 (1431)
Q Consensus 1295 ~L~~~-gI~~~rldGsms~~eR~~~I~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAIgRvhRIG 1373 (1431)
.|... ++.+.+++|+++.++|++++++|+++++++|+|++++++++||||+.|++||++|++|||..+.||+||++|+|
T Consensus 360 ~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 360 IIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIG 439 (500)
T ss_dssp HHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTT
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 99885388769997999999999999996089998779995333557774455888999589989545899999888738
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9895999999949999999999999999999988189976763446799999974329
Q 000549 1374 QTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1431 (1431)
Q Consensus 1374 Qkk~V~V~rLi~kdTIEErIl~lq~kK~~l~~salg~d~~~~~~~~lt~eDL~~LF~~ 1431 (1431)
|+++|+||+|++++|+||+|++++++|+.+++.+++.+. .....++.+||+.||.+
T Consensus 440 q~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 495 (500)
T 1z63_A 440 QTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 495 (500)
T ss_dssp TTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTT--GGGGSSCHHHHHHHHSC
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC--CHHCCCCHHHHHHHHCC
T ss_conf 987069999774898999999999999999999860685--02115999999999646
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=462.07 Aligned_cols=425 Identities=18% Similarity=0.262 Sum_probs=316.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 66787478999999999822068778773998178987699999999980999988763034554410454334443235
Q 000549 661 LAVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVN 740 (1431)
Q Consensus 661 l~v~LlpHQ~~al~wMl~rE~~~~~~~GGILADEMGLGKTIsaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 740 (1431)
..+.|+|||+.++.||+.+. ..|+||||+||+|||+++++++.....
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----~~~~LLad~tGlGKTi~Ai~~i~~l~~---------------------------- 196 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----APRVLLADEVGLGKTIEAGMILHQQLL---------------------------- 196 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----SCEEEECCCTTSCHHHHHHHHHHHHHH----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHHHHH----------------------------
T ss_conf 89997099999999999705-----898898789997599999999999998----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC----C
Q ss_conf 643112345433345899987530134320289998389995714299999999987158999389999589878----8
Q 000549 741 GLDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPTSVLRQWAEELRNKVTSKGSLSVLVYHGSSRT----K 816 (1431)
Q Consensus 741 ~~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~----k 816 (1431)
..+.+++|||||.+|+.||..|+.+++. +.+.+++|.... .
T Consensus 197 -------------------------------~g~~~rvLIVvP~sLl~Qw~~E~~~~f~----l~v~v~~~~~~~~~~~~ 241 (968)
T 3dmq_A 197 -------------------------------SGAAERVLIIVPETLQHQWLVEMLRRFN----LRFALFDDERYAEAQHD 241 (968)
T ss_dssp -------------------------------TSSCCCEEEECCTTTHHHHHHHHHHHSC----CCCEECCHHHHHHHHHT
T ss_pred -------------------------------HCCCCEEEEEECHHHHHHHHHHHHHHHC----CCEEEECCCHHHHHHHH
T ss_conf -------------------------------1899829999578889999999999869----98799806205554320
Q ss_pred CCCCCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 81001589899971022401379899998135898853117999965336766688999986446667899997310001
Q 000549 817 DPCELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIV 896 (1431)
Q Consensus 817 d~~~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~k~K~~~~~~r~~~~~kk~~~~~~~~~~ 896 (1431)
....+..++|||+||+++.+....
T Consensus 242 ~~~~~~~~dIvI~T~~~L~~~~~~-------------------------------------------------------- 265 (968)
T 3dmq_A 242 AYNPFDTEQLVICSLDFARRSKQR-------------------------------------------------------- 265 (968)
T ss_dssp TCSSSTTCSEEEECHHHHHTSTTT--------------------------------------------------------
T ss_pred CCCCCCCCCEEEECHHHHHHCHHH--------------------------------------------------------
T ss_conf 036445689899768998648788--------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEECCCCCCCCHHHH---HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 47755547009999576435784449---99999830--03828999733588995778864100255774315889867
Q 000549 897 AGPLAKVGWFRVVLDEAQSIKNHRTQ---VARACWGL--RAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSM 971 (1431)
Q Consensus 897 ~~~L~~i~W~RVILDEAH~IKN~~T~---~skAi~~L--~Ak~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~ 971 (1431)
...+....|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++||.+..|..+..|...
T Consensus 266 ~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~ 345 (968)
T 3dmq_A 266 LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEE 345 (968)
T ss_dssp THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHH
T ss_pred HHHHHHCCCCEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 88764158778974446762588875429999999986257858999768766987999999982593011898999999
Q ss_pred HCCCC----------CC---------------------------------CCHHHHHHHHHHH-----HHHHHHHCCCCC
Q ss_conf 33678----------88---------------------------------9534389999998-----564531011211
Q 000549 972 IKVPI----------SK---------------------------------NPVKGYKKLQAVL-----KTIMLRRTKGTL 1003 (1431)
Q Consensus 972 i~~pi----------~k---------------------------------~~~~~~~~L~~lL-----~~imLRRtK~dv 1003 (1431)
+.... .. ........+..++ ..+++|+++..+
T Consensus 346 ~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i 425 (968)
T 3dmq_A 346 QKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV 425 (968)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98578899999987426789988999999884203367887503622233379999999999986173326563226554
Q ss_pred CCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 48988657999379999804999999999999999899999999706441019999999999999706700002457404
Q 000549 1004 LDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDHPLLVKGFDSNS 1083 (1431)
Q Consensus 1004 ~dG~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s 1083 (1431)
. .+|++....+.+.+++.++..|...... ........ +. ..+.+|..+
T Consensus 426 ~------~~p~r~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~---------~~-~~~l~pe~~------- 473 (968)
T 3dmq_A 426 K------GFPKRELHTIKLPLPTQYQTAIKVSGIM---------GARKSAED---------RA-RDMLYPERI------- 473 (968)
T ss_dssp C------CCCCCCCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGG---------GT-HHHHCSGGG-------
T ss_pred C------CCCHHHEEEEECCCCHHHHHHHHHHHHH---------HHHHHHHH---------HH-HHHCCHHHH-------
T ss_conf 5------5671115752368999999999987543---------02126677---------77-641085989-------
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 56648999841608999999998653001236679998631101358411023464310148998888532233442210
Q 000549 1084 LLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSV 1163 (1431)
Q Consensus 1084 ~~~~s~e~a~~l~~e~~~~ll~~les~~~~C~iC~~~~e~~vit~CgH~fC~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~ 1163 (1431)
T Consensus 474 -------------------------------------------------------------------------------- 473 (968)
T 3dmq_A 474 -------------------------------------------------------------------------------- 473 (968)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23431023324689999988888874223588677864453789999999996127899865554322344788668999
Q 000549 1164 FSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGD 1243 (1431)
Q Consensus 1164 ~s~~~l~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~~~~~SsKi~allelL~~l~k~~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1431)
+. .+. . ........+.|+..+.++++..
T Consensus 474 ~~------~l~---------~-----------~~~~~~~~~~K~~~L~~ll~~~-------------------------- 501 (968)
T 3dmq_A 474 YQ------EFE---------G-----------DNATWWNFDPRVEWLMGYLTSH-------------------------- 501 (968)
T ss_dssp TT------TTT---------S-----------SSCCTTTTSHHHHHHHHHHHHT--------------------------
T ss_pred HH------HHH---------H-----------HHHCCCCCCHHHHHHHHHHHHC--------------------------
T ss_conf 98------764---------3-----------3313568567999999999837--------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-CCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf 9998899864332025689883202201015997399991668889999999981-799199238987999999999997
Q 000549 1244 SNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKD-SSIQYRRLDGTMSVFARDKAVKDF 1322 (1431)
Q Consensus 1244 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSq~t~~LdlLe~~L~~-~gI~~~rldGsms~~eR~~~I~~F 1322 (1431)
.+.|+|||+++..+++.|+..|.. .|+.+..++|+|+..+|++++++|
T Consensus 502 -------------------------------~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 502 -------------------------------RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp -------------------------------SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred -------------------------------CCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf -------------------------------9997899969599999999999987498389984999999999999997
Q ss_pred HCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 0599-953999614321235685546989998389994938899793201399895999999949999999999999999
Q 000549 1323 NTLP-EVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKR 1401 (1431)
Q Consensus 1323 n~d~-~v~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAIgRvhRIGQkk~V~V~rLi~kdTIEErIl~lq~kK~ 1401 (1431)
++.. .+.||| ++.++++|+|++.|++||++|++|||..+.|++||++|+||++.|.||+++.++|+|++|++++.+|.
T Consensus 551 ~~g~~~~~vLv-aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 551 AEEDTGAQVLL-CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp HSTTSSCEEEE-CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred HCCCCCCCEEE-ECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 47997630898-53343168885567679995699987899987011430799850899980577719999999998678
Q ss_pred HHHH
Q ss_conf 9999
Q 000549 1402 EMVA 1405 (1431)
Q Consensus 1402 ~l~~ 1405 (1431)
.++.
T Consensus 630 ~~~~ 633 (968)
T 3dmq_A 630 DAFE 633 (968)
T ss_dssp CCSS
T ss_pred CCEE
T ss_conf 7635
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=376.26 Aligned_cols=465 Identities=16% Similarity=0.174 Sum_probs=283.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67874789999999998220687787739981789876999999999809999887630345544104543344432356
Q 000549 662 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 741 (1431)
Q Consensus 662 ~v~LlpHQ~~al~wMl~rE~~~~~~~GGILADEMGLGKTIsaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 741 (1431)
..+|+|||++++.|+++. ++||+++||+|||+++++++.....
T Consensus 7 ~~~l~~~Q~~~i~~~~~~--------~~ll~~~tG~GKT~~~~~~~~~~~~----------------------------- 49 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET--------NCLIVLPTGLGKTLIAMMIAEYRLT----------------------------- 49 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS--------CEEEECCTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHC--------CEEEECCCCCCHHHHHHHHHHHHHH-----------------------------
T ss_conf 878639999999999619--------9899918998789999999999986-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-C
Q ss_conf 4311234543334589998753013432028999838999571-4299999999987158999389999589878881-0
Q 000549 742 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLSVLVYHGSSRTKDP-C 819 (1431)
Q Consensus 742 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~VlvyhG~~R~kd~-~ 819 (1431)
.+.+++|||||. +|+.||.+|+.+++.. ....+..++|....... .
T Consensus 50 -------------------------------~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~ 97 (494)
T 1wp9_A 50 -------------------------------KYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSK 97 (494)
T ss_dssp -------------------------------HSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHH
T ss_pred -------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCC-CHHHEEEEECCCCHHHHHH
T ss_conf -------------------------------47985999978889999999999987475-6111687607753355665
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01589899971022401379899998135898853117999965336766688999986446667899997310001477
Q 000549 820 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 899 (1431)
Q Consensus 820 ~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~k~K~~~~~~r~~~~~kk~~~~~~~~~~~~~ 899 (1431)
.+..++|+|+||+++...+.. ..
T Consensus 98 ~~~~~~ivv~T~~~l~~~~~~---------------------------------------------------------~~ 120 (494)
T 1wp9_A 98 AWARAKVIVATPQTIENDLLA---------------------------------------------------------GR 120 (494)
T ss_dssp HHHHCSEEEECHHHHHHHHHT---------------------------------------------------------TS
T ss_pred HCCCCCEEEECHHHHHHHHHC---------------------------------------------------------CC
T ss_conf 335798999639999999860---------------------------------------------------------87
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHH--HHHH-HHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 555470099995764357844499--9999-8300382899973358899577886410025577431588986733678
Q 000549 900 LAKVGWFRVVLDEAQSIKNHRTQV--ARAC-WGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPI 976 (1431)
Q Consensus 900 L~~i~W~RVILDEAH~IKN~~T~~--skAi-~~L~Ak~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi 976 (1431)
+....|.+||+||||.+++..... .+.+ ......++|+|||||. |+..+++.++.++..........+...+...+
T Consensus 121 ~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 199 (494)
T 1wp9_A 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYV 199 (494)
T ss_dssp CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGC
T ss_pred CCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHC
T ss_conf 15654108999787566888819999999973288776999956998-88578999998507000502678758788752
Q ss_pred C--------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8--------89534389999998564531011211489886579993799998049999999999999998999999997
Q 000549 977 S--------KNPVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAA 1048 (1431)
Q Consensus 977 ~--------k~~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~ 1048 (1431)
. .........+...+..++.+|.+.....+ .+++.. ..++..+... + ...+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~~~---~----~~~~~~~~~ 263 (494)
T 1wp9_A 200 KGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG----LLESSS-----PDIPKKEVLR---A----GQIINEEMA 263 (494)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCC-----TTSCHHHHHH---H----HHHHHHHHT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-----CCCCHHHHHH---H----HHHHHHHHH
T ss_conf 78742689568858899999989899999999999735----565457-----7733557899---9----999998753
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
Q ss_conf 064-4101999999999999970670000245740456648999841608999999998653001236679998631101
Q 000549 1049 AGT-VKQNYVNILLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVS 1127 (1431)
Q Consensus 1049 ~g~-~~~~~~~IL~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~les~~~~C~iC~~~~e~~vit 1127 (1431)
.+. ........+..++.++.+..... ..........+..+... |........-
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~------~~~~~~~~~~- 317 (494)
T 1wp9_A 264 KGNHDLRGLLLYHAMALKLHHAIELLE-------------------TQGLSALRAYIKKLYEE------AKAGSTKASK- 317 (494)
T ss_dssp TTCCSTTTHHHHHHHHHHHHHHHHHHH-------------------HTCHHHHHHHHHHHHHH------HHTTCCHHHH-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------HHCHHHHHHHHHHHHHH------HCCCCCHHHH-
T ss_conf 356311347999988888999999998-------------------52579999999999875------2232114556-
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 35841102346431014899888853223344221023431023324689999988888874223588677864453789
Q 000549 1128 ICGHVFCNQCICERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKI 1207 (1431)
Q Consensus 1128 ~CgH~fC~~Ci~~~l~~~~~~CP~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~~~~~SsKi 1207 (1431)
.+++..-+.. .... ... .......++|+
T Consensus 318 ---~~~~~~~~~~----------------------~~~~--~~~-------------------------~~~~~~~~~k~ 345 (494)
T 1wp9_A 318 ---EIFSDKRMKK----------------------AISL--LVQ-------------------------AKEIGLDHPKM 345 (494)
T ss_dssp ---HHHTSHHHHH----------------------HHHH--HHH-------------------------HHHHTCSCHHH
T ss_pred ---HHHHHHHHHH----------------------HHHH--HHH-------------------------HHHCCCCCHHH
T ss_conf ---6665078898----------------------9999--998-------------------------87458998699
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHH
Q ss_conf 99999999612789986555432234478866899999988998643320256898832022010159973999916688
Q 000549 1208 KAALEVLQSLAKPRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTK 1287 (1431)
Q Consensus 1208 ~allelL~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSq~t~ 1287 (1431)
..+.++|..+.. ...+.|+|||+++..
T Consensus 346 ~~l~~~l~~~~~-----------------------------------------------------~~~~~k~lVF~~~~~ 372 (494)
T 1wp9_A 346 DKLKEIIREQLQ-----------------------------------------------------RKQNSKIIVFTNYRE 372 (494)
T ss_dssp HHHHHHHHHHHH-----------------------------------------------------HCTTCCEEEECSCHH
T ss_pred HHHHHHHHHHHC-----------------------------------------------------CCCCCEEEEEECCHH
T ss_conf 999999999843-----------------------------------------------------689975999976689
Q ss_pred HHHHHHHHHHHCCCCEEECCC--------CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 899999999817991992389--------879999999999970599953999614321235685546989998389994
Q 000549 1288 MLDLLEASLKDSSIQYRRLDG--------TMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNP 1359 (1431)
Q Consensus 1288 ~LdlLe~~L~~~gI~~~rldG--------sms~~eR~~~I~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VI~lDp~WNP 1359 (1431)
+++.++..|...++.+.+++| +|+..+|++++++|++ +.+.||| ++.++++|+||+.+++||++|++|||
T Consensus 373 ~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-~~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~ 450 (494)
T 1wp9_A 373 TAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR-GEFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSA 450 (494)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH-TSCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHH
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHC-CCCEEEE-ECCCCCCCCCCHHCCEEEEECCCCCH
T ss_conf 999999999975998079965665444445899999999999866-9946999-88841258871437989992898878
Q ss_pred CHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 9388997932013998959999999499999999999999999999
Q 000549 1360 TTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVA 1405 (1431)
Q Consensus 1360 a~e~QAIgRvhRIGQkk~V~V~rLi~kdTIEErIl~lq~kK~~l~~ 1405 (1431)
..+.|++||++|.|| +.+|+|++++|+||+++.++.+|.+++.
T Consensus 451 ~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 451 IRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 999998752257788---4699999569878999998887898730
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=351.78 Aligned_cols=255 Identities=29% Similarity=0.434 Sum_probs=220.7
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 64531011211489886579993799998049999999999999998999999997064410199999999999997067
Q 000549 993 TIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNILLMLLRLRQACDH 1072 (1431)
Q Consensus 993 ~imLRRtK~dv~dG~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~~~IL~lLlrLRq~c~H 1072 (1431)
.--+||+|++|.. +|||+.+.+++|+|+++|+++|+.+.......+ ..........+++..+++|||+|+|
T Consensus 11 ~~~~rr~k~~v~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 11 SSGLVPRGSHMAS-----DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ----------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHT----TTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHH-----HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5564164877875-----199977999981899999999999999999999----7403521288999999999998489
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 00002457404566489998416089999999986530012366799986311013584110234643101489988885
Q 000549 1073 PLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCICERLTADDNQCPTR 1152 (1431)
Q Consensus 1073 P~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~les~~~~C~iC~~~~e~~vit~CgH~fC~~Ci~~~l~~~~~~CP~~ 1152 (1431)
|.++....
T Consensus 82 P~l~~~~~------------------------------------------------------------------------ 89 (271)
T 1z5z_A 82 PALLKGGE------------------------------------------------------------------------ 89 (271)
T ss_dssp THHHHCSC------------------------------------------------------------------------
T ss_pred HHHHCCCC------------------------------------------------------------------------
T ss_conf 98846873------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 32233442210234310233246899999888888742235886778644537899999999961278998655543223
Q 000549 1153 NCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAKPRGNTVTNHSLRH 1232 (1431)
Q Consensus 1153 ~C~~~l~~~~~~s~~~l~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~~~~~SsKi~allelL~~l~k~~~~~~~~~~~~~ 1232 (1431)
.....++|+..+.++|..+..
T Consensus 90 ----------------------------------------------~~~~~s~K~~~L~~ll~~~~~------------- 110 (271)
T 1z5z_A 90 ----------------------------------------------QSVRRSGKMIRTMEIIEEALD------------- 110 (271)
T ss_dssp ----------------------------------------------CCSTTCHHHHHHHHHHHHHHH-------------
T ss_pred ----------------------------------------------CCCCCCHHHHHHHHHHHHHHH-------------
T ss_conf ----------------------------------------------223468999999999999986-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEECCCCCC
Q ss_conf 4478866899999988998643320256898832022010159973999916688899999999817-991992389879
Q 000549 1233 SFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS-SIQYRRLDGTMS 1311 (1431)
Q Consensus 1233 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSq~t~~LdlLe~~L~~~-gI~~~rldGsms 1311 (1431)
.++|+||||+|+.++++|+..|... |+.+.+++|+++
T Consensus 111 ------------------------------------------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~ 148 (271)
T 1z5z_A 111 ------------------------------------------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELS 148 (271)
T ss_dssp ------------------------------------------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSC
T ss_pred ------------------------------------------CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf ------------------------------------------79969999551999999999998733984799979999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHH
Q ss_conf 99999999997059995399961432123568554698999838999493889979320139989599999994999999
Q 000549 1312 VFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVED 1391 (1431)
Q Consensus 1312 ~~eR~~~I~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAIgRvhRIGQkk~V~V~rLi~kdTIEE 1391 (1431)
..+|++++++|+++++++|+|+|+++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++++|+||
T Consensus 149 ~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 149 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHH
T ss_conf 99999999983289999789972235158867644899999799998518999998523238998569999854988999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf 9999999999999988189976763446799999974329
Q 000549 1392 RILALQQKKREMVASAFGEDETGGQQTRLTVDDLNYLFMV 1431 (1431)
Q Consensus 1392 rIl~lq~kK~~l~~salg~d~~~~~~~~lt~eDL~~LF~~ 1431 (1431)
+|++++.+|+.+++.+++.+. .....++.+||+.||.+
T Consensus 229 ~i~~~~~~K~~l~~~~~~~~~--~~~~~~~~~~l~~l~~~ 266 (271)
T 1z5z_A 229 KIDQLLAFKRSLFKDIISSGD--SWITELSTEELRKVIEL 266 (271)
T ss_dssp HHHHHHHHCHHHHTTGGGGTT--HHHHTSCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHCCCC--HHHHCCCHHHHHHHHCC
T ss_conf 999999999999999971670--54323899999999655
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=342.73 Aligned_cols=379 Identities=17% Similarity=0.184 Sum_probs=268.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 67874789999999998220687787739981789876999999999809999887630345544104543344432356
Q 000549 662 AVPLLRHQRIALSWMVQKETSSLHCSGGILADDQGLGKTISTIALILKERPPSFRTEDDNKRQLETLNLDEEDNGIQVNG 741 (1431)
Q Consensus 662 ~v~LlpHQ~~al~wMl~rE~~~~~~~GGILADEMGLGKTIsaIALI~~~r~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 741 (1431)
..+|+|||.+++.++++. ..+||+++||+|||++++.++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-------~~~ll~~~TGsGKT~~~l~~i~~~------------------------------- 132 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-------KRGCIVLPTGSGKTHVAMAAINEL------------------------------- 132 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-------TEEEEECCTTSCHHHHHHHHHHHH-------------------------------
T ss_pred CCCCCHHHHHHHHHHHHC-------CCEEEEECCCCCHHHHHHHHHHHC-------------------------------
T ss_conf 998688999999999965-------987999699998899999999980-------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECH-HHHHHHHHHHHHHHCCCCCCE-EEEEECCCCCCCCC
Q ss_conf 4311234543334589998753013432028999838999571-429999999998715899938-99995898788810
Q 000549 742 LDLVKQESDYCRVVPNGSSAKSFNFVEQAKGRPAAGTLVVCPT-SVLRQWAEELRNKVTSKGSLS-VLVYHGSSRTKDPC 819 (1431)
Q Consensus 742 ~~~~k~~~~~c~~~~~~~~~~~~~~~~~~~~~p~~~TLIVcP~-SLL~QW~~EI~k~~~~~~~L~-VlvyhG~~R~kd~~ 819 (1431)
.+++|||||. +|+.||.+++.+ + .+. +.+++|....
T Consensus 133 ---------------------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~v~~~~g~~~~---- 170 (472)
T 2fwr_A 133 ---------------------------------STPTLIVVPTLALAEQWKERLGI-F----GEEYVGEFSGRIKE---- 170 (472)
T ss_dssp ---------------------------------CSCEEEEESSHHHHHHHHHHGGG-G----CGGGEEEBSSSCBC----
T ss_pred ---------------------------------CCCEEEEECCHHHHHHHHHHHHH-C----CCCCEEEECCCCCC----
T ss_conf ---------------------------------99999998799999999999996-7----99636998787677----
Q ss_pred CCCCCCEEEEECHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01589899971022401379899998135898853117999965336766688999986446667899997310001477
Q 000549 820 ELAKFDVVITTYSIVSMEVPKQPLGDKEDEEEKMKIEGEDLPPMYCSSSKKRKCPPSSDRKGSKQKKGPDGLLLDIVAGP 899 (1431)
Q Consensus 820 ~L~~yDVVITTY~tl~~e~~k~~~~~~~d~~~k~~~~~~~~~~~~~~~~~k~K~~~~~~r~~~~~kk~~~~~~~~~~~~~ 899 (1431)
..+|+|+||+.+...+.
T Consensus 171 ---~~~Ivv~T~~~l~~~~~------------------------------------------------------------ 187 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAE------------------------------------------------------------ 187 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHH------------------------------------------------------------
T ss_pred ---CCCEEEEECHHHHHHHH------------------------------------------------------------
T ss_conf ---67789997689997799------------------------------------------------------------
Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 55547009999576435784449999998300382899973358899577886410025577431588986733678889
Q 000549 900 LAKVGWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFAVYKSFCSMIKVPISKN 979 (1431)
Q Consensus 900 L~~i~W~RVILDEAH~IKN~~T~~skAi~~L~Ak~RwlLTGTPIqN~l~DLyslL~FLr~~pf~~~~~F~~~i~~pi~k~ 979 (1431)
...-.|..||+||||.+.+.... +.+..+.+.++++|||||..+.-.+
T Consensus 188 ~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~------------------------------ 235 (472)
T 2fwr_A 188 KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH------------------------------ 235 (472)
T ss_dssp HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG------------------------------
T ss_pred HHCCCCCEEEEECCCCCCCHHHH--HHHHHCCCCEEEEEECCCCCCCCHH------------------------------
T ss_conf 73687778999897578976899--9997357781899932766889778------------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 53438999999856453101121148988657999379999804999999999999999899999999706441019999
Q 000549 980 PVKGYKKLQAVLKTIMLRRTKGTLLDGEPIINLPPKVIMLKQVDFTDEERDFYSQLEINSRDQFKEYAAAGTVKQNYVNI 1059 (1431)
Q Consensus 980 ~~~~~~~L~~lL~~imLRRtK~dv~dG~pii~LPpk~~~vv~v~lS~eEr~~Y~~L~~~sr~~~~~~~~~g~~~~~~~~I 1059 (1431)
..+..++.+++.++...++..+ .+++.....+.+++++.++..|..+...... +.....
T Consensus 236 -----~~l~~~~~~~~~~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~-------- 294 (472)
T 2fwr_A 236 -----EILKEVVGGKVFELFPDSLAGK----HLAKYTIKRIFVPLAEDERVEYEKREKVYKQ----FLRARG-------- 294 (472)
T ss_dssp -----GSHHHHTCCEEEECCHHHHTSC----CCCSEEECCEEECCCHHHHHHTTTTTHHHHS----CSSSCC--------
T ss_pred -----HHHHHHHCCEEEECCHHHHHCC----CCCCEEEEEEECCCCHHHHHHHHHHHHHHHH----HHHHCC--------
T ss_conf -----9999972985765478987067----6788189999858998999999999999999----998647--------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCHHHHH
Q ss_conf 99999999970670000245740456648999841608999999998653001236679998631101358411023464
Q 000549 1060 LLMLLRLRQACDHPLLVKGFDSNSLLRSSVEMAKKLPQERQMYLLNCLEASLAICGICNDPPEDAVVSICGHVFCNQCIC 1139 (1431)
Q Consensus 1060 L~lLlrLRq~c~HP~Lv~~~~~~s~~~~s~e~a~~l~~e~~~~ll~~les~~~~C~iC~~~~e~~vit~CgH~fC~~Ci~ 1139 (1431)
........ + ...+..+
T Consensus 295 --------------~~~~~~~~---~-------------------------------------~~~~~~~---------- 310 (472)
T 2fwr_A 295 --------------ITLRRAED---F-------------------------------------NKIVMAS---------- 310 (472)
T ss_dssp --------------CTTTCCSS---S-------------------------------------TTTTTTT----------
T ss_pred --------------CCCCCHHH---H-------------------------------------HHHHHHH----------
T ss_conf --------------54224466---8-------------------------------------9999872----------
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 31014899888853223344221023431023324689999988888874223588677864453789999999996127
Q 000549 1140 ERLTADDNQCPTRNCKIRLSLSSVFSKATLNNSLSQRQPGQEIPTDYSDSKLVEAPSCEGVWYNSSKIKAALEVLQSLAK 1219 (1431)
Q Consensus 1140 ~~l~~~~~~CP~~~C~~~l~~~~~~s~~~l~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~~~~~SsKi~allelL~~l~k 1219 (1431)
..++ .+...+.. .... . .-....+.|+..+.+++...
T Consensus 311 -------~~~~--~~~~~~~~---~~~~-~----------------------------~~~~~~~~k~~~l~~~l~~~-- 347 (472)
T 2fwr_A 311 -------GYDE--RAYEALRA---WEEA-R----------------------------RIAFNSKNKIRKLREILERH-- 347 (472)
T ss_dssp -------CCSS--SSSTTTHH---HHHH-H----------------------------HHHHSCSHHHHHHHHHHHHT--
T ss_pred -------CCCH--HHHHHHHH---HHHH-H----------------------------HHHHCCHHHHHHHHHHHHHC--
T ss_conf -------3698--89999999---9999-9----------------------------97633738999999999857--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 89986555432234478866899999988998643320256898832022010159973999916688899999999817
Q 000549 1220 PRGNTVTNHSLRHSFNGSICCPGDSNDLHGGDTLDNISDENEKIAAKCSIDSIKLGGEKAIVFSQWTKMLDLLEASLKDS 1299 (1431)
Q Consensus 1220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~~eKvIIFSq~t~~LdlLe~~L~~~ 1299 (1431)
.+.|+|||+++..+++.|...|.
T Consensus 348 -------------------------------------------------------~~~k~lvF~~~~~~~~~l~~~l~-- 370 (472)
T 2fwr_A 348 -------------------------------------------------------RKDKIIIFTRHNELVYRISKVFL-- 370 (472)
T ss_dssp -------------------------------------------------------SSSCBCCBCSCHHHHHHHHHHTT--
T ss_pred -------------------------------------------------------CCCCEEEEECCHHHHHHHHHHHC--
T ss_conf -------------------------------------------------------89838999797999999999748--
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCC-CCE
Q ss_conf 9919923898799999999999705999539996143212356855469899983899949388997932013998-959
Q 000549 1300 SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQT-RPV 1378 (1431)
Q Consensus 1300 gI~~~rldGsms~~eR~~~I~~Fn~d~~v~VLLlSlkAGg~GLNLt~An~VI~lDp~WNPa~e~QAIgRvhRIGQk-k~V 1378 (1431)
+..++|.++..+|++++++|++ +.++||+ ++.++++|+|++.+++||+++++||+..+.|++||++|.||. +.|
T Consensus 371 ---~~~~~g~~~~~~R~~~~~~F~~-g~~~vLv-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 371 ---IPAITHRTSREEREEILEGFRT-GRFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp ---CCBCCSSSCSHHHHTHHHHHHH-SSCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred ---CCEEECCCCHHHHHHHHHHHHC-CCCCEEE-ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf ---6556289999999999999867-9988899-8570514846202868999899998889999876315777998539
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999499999999999999999999
Q 000549 1379 SVLRLTVKNTVEDRILALQQKKREMVA 1405 (1431)
Q Consensus 1379 ~V~rLi~kdTIEErIl~lq~kK~~l~~ 1405 (1431)
.||.|+.++|+|++|.+++++|+++++
T Consensus 446 ~i~~lv~~~t~ee~~~~~r~~~~~~a~ 472 (472)
T 2fwr_A 446 VLYELISRGTGEVNTARRRKNAAKGAA 472 (472)
T ss_dssp EEEEEEECSCC----------------
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 999998199853799999987650589
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=324.88 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=114.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9973999916688899999999817------------9919923898799999999999705999539996143212356
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1342 (1431)
Q Consensus 1275 ~~eKvIIFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~~I~~Fn~d~~v~VLLlSlkAGg~GL 1342 (1431)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|+.++.++||| +|.++++||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLV-aT~~~~eGI 708 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE-EECCHHCCC
T ss_conf 9974999969799999999998637353666616996578765678889999999999863159815999-807264277
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8554698999838999493889979320139989599999994999999999999999999998818
Q 000549 1343 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1409 (1431)
Q Consensus 1343 NLt~An~VI~lDp~WNPa~e~QAIgRvhRIGQkk~V~V~rLi~kdTIEErIl~lq~kK~~l~~salg 1409 (1431)
|++.+++||+||++|||..+.|++|| ||.+++.+++|+.++|+|+++. ++..|.+++..++.
T Consensus 709 Dlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp -CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHHH
T ss_conf 60558989993899988999996487----7888877999986988999999-98899999999999
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=316.43 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=116.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9973999916688899999999817------------9919923898799999999999705999539996143212356
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1342 (1431)
Q Consensus 1275 ~~eKvIIFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~~I~~Fn~d~~v~VLLlSlkAGg~GL 1342 (1431)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|..++++|++++.++||| +|.+++.||
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLV-aT~~~~~GI 708 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 708 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEE-EECC-----
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE-ECCCHHCCC
T ss_conf 9970899979589999999999747564665521898447754578989999999999851369704999-748054479
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8554698999838999493889979320139989599999994999999999999999999998818
Q 000549 1343 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1409 (1431)
Q Consensus 1343 NLt~An~VI~lDp~WNPa~e~QAIgRvhRIGQkk~V~V~rLi~kdTIEErIl~lq~kK~~l~~salg 1409 (1431)
|++.+++||+||++|||..+.|++|| ||.+++.+++|+.++++|++ ..++..|..++..++.
T Consensus 709 Dlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 709 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp --CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75108989994899988999985388----87878659999728768899-9988899999999999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=310.14 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=115.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC------------CCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
Q ss_conf 9973999916688899999999817------------9919923898799999999999705999539996143212356
Q 000549 1275 GGEKAIVFSQWTKMLDLLEASLKDS------------SIQYRRLDGTMSVFARDKAVKDFNTLPEVSVMIMSLKAASLGL 1342 (1431)
Q Consensus 1275 ~~eKvIIFSq~t~~LdlLe~~L~~~------------gI~~~rldGsms~~eR~~~I~~Fn~d~~v~VLLlSlkAGg~GL 1342 (1431)
.+.|+|||++++.+++.|...|... |..+..++|+|+..+|.+++++|++++.++||| +|.++++||
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~~~~Gi 467 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSVADEGI 467 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEE-EEC------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCHHCCC
T ss_conf 9854999976589999999999858775500014787367765565669899999999840469658999-767043377
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8554698999838999493889979320139989599999994999999999999999999998818
Q 000549 1343 NMVAACHVLLLDLWWNPTTEDQAIDRAHRIGQTRPVSVLRLTVKNTVEDRILALQQKKREMVASAFG 1409 (1431)
Q Consensus 1343 NLt~An~VI~lDp~WNPa~e~QAIgRvhRIGQkk~V~V~rLi~kdTIEErIl~lq~kK~~l~~salg 1409 (1431)
|++.+++||+||++|||....|++|| ||.+++.++.|+.++++|++ ..++..|.+++..++.
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH
T ss_conf 75217889991899978899886387----87888418999827636777-7755799999999999
Done!