BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000553
(1428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 176 bits (447), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 212/893 (23%), Positives = 369/893 (41%), Gaps = 124/893 (13%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYV 677
+L + G VA++G G GKS++++ +L + G I G ++A V
Sbjct: 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYIGEKGVNL 734
Q P + + TI +NI GK + + E + AC + + I + G +G++G L
Sbjct: 498 SQEPALFNCTIEENISLGK--EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL 555
Query: 735 SGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHMLQKTRILCT 791
SGGQ + I +LD+ SA+DA+ + + L A G +T I+
Sbjct: 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG-----RTTIIIA 610
Query: 792 HNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFWSTNEFDTSLHMQKQEMRTNA 849
H + I AD+++ GQV +G L LY + F ++ + +
Sbjct: 611 HRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRE 670
Query: 850 SSANKQILLQEKDVVSVSDDAQEIIEVEQR-----------------KEGRV-------- 884
+S +Q E +S A E+ ++ R KE R+
Sbjct: 671 NSVARQTSEHE----GLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRL 726
Query: 885 ELTVYKNYAKFSGWFITLVICLSAIL-----MQASRNGNDLWLSYWVDTT-------GSS 932
+ + +N A+ + F L L M + G ++ +Y V T G+
Sbjct: 727 KQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNP 786
Query: 933 QTKYSTS-FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 991
S F+ ++ + + + F S + N L +++ + FFD
Sbjct: 787 ADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFD 846
Query: 992 --QTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXX 1049
Q G+I R ++D+ + ++ F + ++ V ++
Sbjct: 847 SPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAIL 906
Query: 1050 XIYSKLQFFY--RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1107
I + Q+ R T + ++ + S A E + T++A ED F F E
Sbjct: 907 PIVAFGQYLRGRRFTGKNVKSASEFADSGKIA--IEAIENVRTVQALAREDTFYENFCEK 964
Query: 1108 V----------VLYQRTSYSELTASLWL--SLRLQVGLAL----------------SYAA 1139
+ Q SY ++ L+L + ++GLAL YA
Sbjct: 965 LDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAI 1024
Query: 1140 PI-VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS---PDWPFQGLIEFQ 1195
I S LG S F E K + + + ++ SLS G + F+
Sbjct: 1025 TISTSTLGFATSYFPEYAKATFAGGIIFGML----RKISKIDSLSLAGEKKKLYGKVIFK 1080
Query: 1196 NVTMRYKPSLPAA--LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253
NV Y P P L ++F++E G + +VG +G GKS+++ L R GG+I +D
Sbjct: 1081 NVRFAY-PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFID 1139
Query: 1254 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN----LDPFHMN-DDLKIWSVLEKCH-- 1306
G I R + A+V Q P LF+ S+ +N LDP + ++ + L H
Sbjct: 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNF 1199
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G ET V + G S GQ+Q I +ARAL+++ K+L LDE T+ +D ++ ++Q
Sbjct: 1200 IAELPE--GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQ 1257
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1419
A+ +G T I IAHR++TV+N D I ++ +G ++E+G L+ ++ + +
Sbjct: 1258 EALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 136 bits (343), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 135/250 (54%), Gaps = 11/250 (4%)
Query: 1185 DWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1242
D +G I +NV Y +P +P L +N + G V +VG +G GKS+I++ L R
Sbjct: 409 DMKIKGDITVENVHFTYPSRPDVPI-LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467
Query: 1243 TPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL 1302
+ G+I +DG+++ + + LR AVV Q P LF ++ +N+ + + ++
Sbjct: 468 YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS--LGKEGITREEMV 525
Query: 1303 EKCHVKEEVEAV-----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1357
C + + + G T V + G S GQ+Q I +ARAL+++ K+L LDE T+ +
Sbjct: 526 AACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 585
Query: 1358 DAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECS 1417
DA++ I+Q A+ KG T I IAHR+ST+ N D I+ +G +VE G+ + L+ +
Sbjct: 586 DAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ-G 644
Query: 1418 VFSSFVRAST 1427
++ V A T
Sbjct: 645 LYYDLVTAQT 654
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 170 bits (430), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 228/500 (45%), Gaps = 73/500 (14%)
Query: 973 KVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAX 1032
++ L K+ PV FFD+TP G I++R +D+ I++ L N ++ F G++ +A
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLG---NSIIQFFSGIVTLAG 167
Query: 1033 XXXXXXXXXXXXXXXXXXIY-----------SKLQFFYRSTSRELRRLDSVSRSPIYASF 1081
I S+ + ++ R L +L+ +
Sbjct: 168 AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGI--------I 219
Query: 1082 TETLNGSSTIRAFKSEDYFMAKFKE-----HVVLYQRTSYSELTASL------------- 1123
E ++G + I+ F E+ M KF V + +S + L
Sbjct: 220 EEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALIS 279
Query: 1124 ----WLSLR--LQVGLA---LSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1174
WL+L+ + VG + Y+ L + F + + S ER+ E +D+ +E
Sbjct: 280 GFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE 339
Query: 1175 ELCGYQSLSPD----WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGA 1230
+ PD +G IEF+NV Y P L DI F I+ G +V +VG TG+
Sbjct: 340 KD------DPDAVELREVRGEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGS 392
Query: 1231 GKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--- 1287
GK++I+N L R + GQILVDG++I LR +V Q LF ++++NL
Sbjct: 393 GKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG 452
Query: 1288 DPFHMNDDLKIWSVLEKC-----HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342
+P ++++K + L H+ E G ET + ++G S GQRQL+ + RA L
Sbjct: 453 NPGATDEEIKEAAKLTHSDHFIKHLPE-----GYETVLTDNGEDLSQGQRQLLAITRAFL 507
Query: 1343 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
+ K+L LDE T+NVD +T +Q A+ +G T I IAHR++T+ N D I++L G +
Sbjct: 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
Query: 1403 VEQGNPQTLLQDECSVFSSF 1422
VE G L+Q + F
Sbjct: 568 VEMGKHDELIQKRGFYYELF 587
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWI 683
G VA++G GSGK++++N ++ + G I G SI V Q +
Sbjct: 381 GQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL 440
Query: 684 LSGTIRDNILFGKNYDPQSYSETLK-ACTL---DVDISLMVGGDMAYIGEKGVNLSGGQX 739
S T+++N+ +G +P + E +K A L D I + G + + G +LS GQ
Sbjct: 441 FSTTVKENLKYG---NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497
Query: 740 XXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
I +LD+ S VD + + I A M M KT I+ H + I
Sbjct: 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSI--QAAMWKLMEGKTSIIIAHRLNTIKN 555
Query: 800 ADMVVVMDKGQVKWIGSSADL 820
AD+++V+ G++ +G +L
Sbjct: 556 ADLIIVLRDGEIVEMGKHDEL 576
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 690
+ +P+G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ WI + ++R+
Sbjct: 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRE 84
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYH 750
NILFG + Y ++AC L D+ ++ GD IGEKGVNLSGGQ VY
Sbjct: 85 NILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 144
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAADMVVVMDKG 809
+DIY+ DD LSAVDA V + I N I ML+ KTRIL TH++ + D+++VM G
Sbjct: 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGG 204
Query: 810 QVKWIGSSADL 820
++ +GS +L
Sbjct: 205 KISEMGSYQEL 215
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 33/245 (13%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I +N T + S P L+ I F+I G V +VG+ G GKSS+L+AL G +
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-------DPFHMNDDLKIWSVLEK 1304
+ +G A VPQ ++ SLR+N+ +P++ SV++
Sbjct: 64 I-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYR-------SVIQA 103
Query: 1305 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1362
C + ++E + G T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA
Sbjct: 104 CALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 1363 S-ILQNAISSE--CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1419
I +N I + K T I + H +S + +D I+++ G + E G+ Q LL + F
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAF 222
Query: 1420 SSFVR 1424
+ F+R
Sbjct: 223 AEFLR 227
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 156 bits (395), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 233/503 (46%), Gaps = 48/503 (9%)
Query: 958 VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1017
+R + R ++ +L + I+ V FFD+T G ++NR SSD ++ S+ L
Sbjct: 81 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 140
Query: 1018 -NILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSP 1076
+ L A +GI+ + S + Y R LR+L V++
Sbjct: 141 SDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPV-SIIAVIY---GRYLRKLTKVTQDS 196
Query: 1077 IYAS---FTETLNGSSTIRAFKSEDYFMAKFK---EHVV-LYQRTSYSE--------LTA 1121
+ + E + T+RAF E + K+ +HV+ L ++ +++ L+
Sbjct: 197 LAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSG 256
Query: 1122 SLW-LSLRLQVGLALSYAAPIVSLLGNFL--------------SSFTETEKEMVSLERVL 1166
+L LS+ + GL + A V L +FL S ++E K + + R+
Sbjct: 257 NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLW 316
Query: 1167 EYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGI 1224
E ++ + + + FQG +EF+NV Y +P +P D + +I G+ +
Sbjct: 317 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI-FQDFSLSIPSGSVTAL 375
Query: 1225 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLR 1284
VG +G+GKS++L+ L RL G I +DG +I LR + V Q P LF S+
Sbjct: 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 435
Query: 1285 DNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--------GLETFVKESGISFSVGQRQLIC 1336
+N+ + DD + E V E AV G T V E G+ S GQ+Q I
Sbjct: 436 ENIA--YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 493
Query: 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI 1396
+ARALLK+ K+L LDE T+ +DA+ ++Q A+ G TV+ IAHR+ST+ N + + +
Sbjct: 494 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAV 553
Query: 1397 LDHGHLVEQGNPQTLLQDECSVF 1419
LD G + E G + LL ++
Sbjct: 554 LDQGKITEYGKHEELLSKPNGIY 576
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 21/208 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYV 677
SL +P GS+ A++G GSGKS++L+ +L G+I G I V
Sbjct: 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 423
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYS--ETLKACTLDVDISLMVG---GDMAYIGEKGV 732
Q P + S +I +NI +G + DP S + E + + ++ + G +GEKGV
Sbjct: 424 SQEPILFSCSIAENIAYGAD-DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482
Query: 733 NLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQ + I +LD+ SA+DA+ +++ A + M +T ++ H
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAE-NEYLVQEA-LDRLMDGRTVLVIAH 540
Query: 793 NVQAISAADMVVVMDKGQVKWIGSSADL 820
+ I A+MV V+D+G++ G +L
Sbjct: 541 RLSTIKNANMVAVLDQGKITEYGKHEEL 568
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 153 bits (387), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 140/503 (27%), Positives = 232/503 (46%), Gaps = 48/503 (9%)
Query: 958 VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1017
+R + R ++ +L + I+ V FFD+T G ++NR SSD ++ S+ L
Sbjct: 112 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 171
Query: 1018 -NILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSP 1076
+ L A +GI+ + S + Y R LR+L V++
Sbjct: 172 SDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPV-SIIAVIY---GRYLRKLTKVTQDS 227
Query: 1077 IYAS---FTETLNGSSTIRAFKSEDYFMAKFK---EHVV-LYQRTSYSE--------LTA 1121
+ + E + T+RAF E + K+ +HV+ L ++ +++ L+
Sbjct: 228 LAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSG 287
Query: 1122 SLW-LSLRLQVGLALSYAAPIVSLLGNFL--------------SSFTETEKEMVSLERVL 1166
+L LS+ + GL + A V L +FL S ++E K + + R+
Sbjct: 288 NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLW 347
Query: 1167 EYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGI 1224
E ++ + + + FQG +EF+NV Y +P +P D + +I G+ +
Sbjct: 348 ELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI-FQDFSLSIPSGSVTAL 406
Query: 1225 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLR 1284
VG +G+GKS++L+ L RL G I +DG +I LR + V Q P LF S+
Sbjct: 407 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 466
Query: 1285 DNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--------GLETFVKESGISFSVGQRQLIC 1336
+N+ + DD + E V E AV G T V E G+ S GQ+Q I
Sbjct: 467 ENIA--YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 524
Query: 1337 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI 1396
+ARALLK+ K+L LDE T+ +DA+ ++Q A+ G TV+ IAH +ST+ N + + +
Sbjct: 525 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAV 584
Query: 1397 LDHGHLVEQGNPQTLLQDECSVF 1419
LD G + E G + LL ++
Sbjct: 585 LDQGKITEYGKHEELLSKPNGIY 607
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYV 677
SL +P GS+ A++G GSGKS++L+ +L G+I G I V
Sbjct: 395 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTV 454
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYS--ETLKACTLDVDISLMVG---GDMAYIGEKGV 732
Q P + S +I +NI +G + DP S + E + + ++ + G +GEKGV
Sbjct: 455 SQEPILFSCSIAENIAYGAD-DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 513
Query: 733 NLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQ + I +LD+ SA+DA+ +++ A + M +T ++ H
Sbjct: 514 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAE-NEYLVQEA-LDRLMDGRTVLVIAH 571
Query: 793 NVQAISAADMVVVMDKGQVKWIGSSADL 820
++ I A+MV V+D+G++ G +L
Sbjct: 572 HLSTIKNANMVAVLDQGKITEYGKHEEL 599
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 150 bits (379), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 189/384 (49%), Gaps = 31/384 (8%)
Query: 1064 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY-----------FMAKFKEHVV--L 1110
R+L R S + + + E + G S +++F ED F+ + +H
Sbjct: 186 RKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245
Query: 1111 YQRTSYSELT-----------ASLWLSLRLQVGLALSYAAPIVSLLG---NFLSSFTETE 1156
Y + + +T A L +S + VG ++ + L G ++SFT
Sbjct: 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLT 305
Query: 1157 KEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTI 1216
+ S++RV + +D + G + P QG I+ +V+ +Y + L DIN +I
Sbjct: 306 QSFASMDRVFQLIDEDYDIKNGVGA-QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSI 364
Query: 1217 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP 1276
E G V VG +G GKS+++N + R + GQIL+DG NI + LR + +V Q
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424
Query: 1277 FLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1333
LF ++++N+ P ++++ + + H G +T V E G+ S GQ+Q
Sbjct: 425 ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484
Query: 1334 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE 1393
+ +AR L + +L LDE T+ +D ++ SI+Q A+ K T + +AHR+ST+ + D+
Sbjct: 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADK 544
Query: 1394 ILILDHGHLVEQGNPQTLLQDECS 1417
I+++++GH+VE G + L+ + +
Sbjct: 545 IVVIENGHIVETGTHRELIAKQGA 568
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 22/207 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYV 677
+L + KG VA +G G GKS+L+N I +T G I G I V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 678 PQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
Q + S T+++NIL G+ D + A D ++L G D +GE+GV LS
Sbjct: 421 QQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTE-VGERGVKLS 479
Query: 736 GGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHN 793
GGQ + I +LD+ SA+D + + I+ A+ +L K R ++ H
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLE-SESIIQEAL---DVLSKDRTTLIVAHR 535
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADL 820
+ I+ AD +VV++ G + G+ +L
Sbjct: 536 LSTITHADKIVVIENGHIVETGTHREL 562
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 150 bits (378), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 151/270 (55%), Gaps = 9/270 (3%)
Query: 1153 TETEKEMVSLERVLEYMDVPQEELCG-YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1211
+E ++ M + + + MD+ E G Y++ + G ++ ++VT Y+ AL
Sbjct: 306 SEFQRGMAACQTLFGLMDLETERDNGKYEAERVN----GEVDVKDVTFTYQGKEKPALSH 361
Query: 1212 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1271
++F+I G V +VGR+G+GKS+I N R + G I +DG ++ + + +LR FA+
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
Query: 1272 VPQSPFLFEGSLRDNLDPFHMNDDLK--IWSVLEKCHVKEEVEAV--GLETFVKESGISF 1327
V Q+ LF ++ +N+ + + I + H E +E + GL+T + E+G S
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481
Query: 1328 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1387
S GQRQ + +ARALL+ + VL LDE T+ +D ++ +Q A+ K TV+ IAHR+ST
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST 541
Query: 1388 VLNMDEILILDHGHLVEQGNPQTLLQDECS 1417
+ DEIL++D G ++E+G LL + +
Sbjct: 542 IEQADEILVVDEGEIIERGRHADLLAQDGA 571
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 17/205 (8%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYV 677
S +P+G VA++G GSGKS++ N + GSI G A V
Sbjct: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
Query: 678 PQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
Q + + TI +NI + Y + + + I M G IGE G +LS
Sbjct: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
Query: 736 GGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 795
GGQ + + + +LD+ SA+D + R I A + KT ++ H +
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAI--QAALDELQKNKTVLVIAHRLS 540
Query: 796 AISAADMVVVMDKGQVKWIGSSADL 820
I AD ++V+D+G++ G ADL
Sbjct: 541 TIEQADEILVVDEGEIIERGRHADL 565
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 149 bits (377), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 132/234 (56%), Gaps = 7/234 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
+DG ++ LR + VV Q L S+ DN+ +P + + + L H
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 122 ISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI---LSGT 687
+L + +G ++ ++G GSGKS+L I + +G + G + W+ +
Sbjct: 23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 82
Query: 688 IRDNILFGKNY-------DP-QSYSETLKACTLDVD---ISLMVGGDMAYIGEKGVNLSG 736
++DN+L ++ +P S + + A L IS + G +GE+G LSG
Sbjct: 83 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 142
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNV 794
GQ + + I + D+ SA+D + I+ N H + K R I+ H +
Sbjct: 143 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM----HKICKGRTVIIIAHRL 198
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
+ AD ++VM+KG++ G +L SLYS +
Sbjct: 199 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 149 bits (377), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 132/234 (56%), Gaps = 7/234 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
+DG ++ LR + VV Q L S+ DN+ +P + + + L H
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 128 ISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI---LSGT 687
+L + +G ++ ++G GSGKS+L I + +G + G + W+ +
Sbjct: 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 88
Query: 688 IRDNILFGKNY-------DP-QSYSETLKACTLDVD---ISLMVGGDMAYIGEKGVNLSG 736
++DN+L ++ +P S + + A L IS + G +GE+G LSG
Sbjct: 89 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 148
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNV 794
GQ + + I + D+ SA+D + I+ N H + K R I+ H +
Sbjct: 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM----HKICKGRTVIIIAHRL 204
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
+ AD ++VM+KG++ G +L SLYS +
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 132/234 (56%), Gaps = 7/234 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
+DG ++ LR + VV Q L S+ DN+ +P + + + L H
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 124 ISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 235
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI---LSGT 687
+L + +G ++ ++G GSGKS+L I + +G + G + W+ +
Sbjct: 25 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 84
Query: 688 IRDNILFGKNY-------DP-QSYSETLKACTLDVD---ISLMVGGDMAYIGEKGVNLSG 736
++DN+L ++ +P S + + A L IS + G +GE+G LSG
Sbjct: 85 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 144
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNV 794
GQ + + I + D+ SA+D + I+ N H + K R I+ H +
Sbjct: 145 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM----HKICKGRTVIIIAHRL 200
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
+ AD ++VM+KG++ G +L SLYS +
Sbjct: 201 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 131/234 (55%), Gaps = 7/234 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR G+GKS++ + R GQ+L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
+DG ++ LR + VV Q L S+ DN+ +P + + + L H
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 124 ISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 235
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI---LSGT 687
+L + +G ++ ++G GSGKS+L I + +G + G + W+ +
Sbjct: 25 NLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 84
Query: 688 IRDNILFGKNY-------DP-QSYSETLKACTLDVD---ISLMVGGDMAYIGEKGVNLSG 736
++DN+L ++ +P S + + A L IS + G +GE+G LSG
Sbjct: 85 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 144
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNV 794
GQ + + I + D+ SA+D + I+ N H + K R I+ H +
Sbjct: 145 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM----HKICKGRTVIIIAHRL 200
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
+ AD ++VM+KG++ G +L SLYS +
Sbjct: 201 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 132/234 (56%), Gaps = 7/234 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
+DG ++ LR + VV Q L S+ DN+ +P + + + L H
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G T V E G S GQRQ I +ARAL+ + K+L D+ T+ +D ++ ++
Sbjct: 128 ISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 23/218 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI---LSGT 687
+L + +G ++ ++G GSGKS+L I + +G + G + W+ +
Sbjct: 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 88
Query: 688 IRDNILFGKNY-------DP-QSYSETLKACTLDVD---ISLMVGGDMAYIGEKGVNLSG 736
++DN+L ++ +P S + + A L IS + G +GE+G LSG
Sbjct: 89 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 148
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNV 794
GQ + + I + D SA+D + I+ N H + K R I+ H +
Sbjct: 149 GQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM----HKICKGRTVIIIAHRL 204
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
+ AD ++VM+KG++ G +L SLYS +
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 131/234 (55%), Gaps = 7/234 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
+DG ++ LR + VV Q L S+ DN+ +P + + + L H
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 122 ISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ CKG TVI IA R+STV N D I++++ G +VEQG + LL + S++S
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 23/218 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI---LSGT 687
+L + +G ++ ++G GSGKS+L I + +G + G + W+ +
Sbjct: 23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 82
Query: 688 IRDNILFGKNY-------DP-QSYSETLKACTLDVD---ISLMVGGDMAYIGEKGVNLSG 736
++DN+L ++ +P S + + A L IS + G +GE+G LSG
Sbjct: 83 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 142
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNV 794
GQ + + I + D+ SA+D + I+ N H + K R I+ +
Sbjct: 143 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM----HKICKGRTVIIIAARL 198
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
+ AD ++VM+KG++ G +L SLYS +
Sbjct: 199 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 131/234 (55%), Gaps = 7/234 (2%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1306
+DG ++ LR + VV Q L S+ DN+ +P + + + L H
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 1307 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1366
+ E E G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 128 ISELRE--GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 1367 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
+ CKG TVI IA R+STV N D I++++ G +VEQG + LL + S++S
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 23/218 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI---LSGT 687
+L + +G ++ ++G GSGKS+L I + +G + G + W+ +
Sbjct: 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVV 88
Query: 688 IRDNILFGKNY-------DP-QSYSETLKACTLDVD---ISLMVGGDMAYIGEKGVNLSG 736
++DN+L ++ +P S + + A L IS + G +GE+G LSG
Sbjct: 89 LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG 148
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNV 794
GQ + + I + D+ SA+D + I+ N H + K R I+ +
Sbjct: 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM----HKICKGRTVIIIAARL 204
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 829
+ AD ++VM+KG++ G +L SLYS +
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 181/367 (49%), Gaps = 43/367 (11%)
Query: 1083 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT------------------ASLW 1124
E L G +RAF+ E+Y F++ +R+ S + A LW
Sbjct: 207 ENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLW 266
Query: 1125 L------SLRLQVGLALSYAAPIVSLL------GNFLSSFTETEKEMVSLERVLEYM-DV 1171
+ ++++G ++Y ++ ++ GN L+ S +RVLE + +
Sbjct: 267 FGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRAS---ASAKRVLEVLNEK 323
Query: 1172 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAG 1231
P E P+ +G + F+NV RY + L +NF+++ G+ V ++G TG+G
Sbjct: 324 PAIEEADNALALPN--VEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSG 381
Query: 1232 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH 1291
KS+++N + RL G++ VD L++ ++DLRG + VPQ LF G++++NL
Sbjct: 382 KSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLK--W 439
Query: 1292 MNDDLKIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSVGQRQLICLARALLKSSK 1346
+D ++E + + + + G ++ V+ G +FS GQ+Q + +ARAL+K K
Sbjct: 440 GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499
Query: 1347 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1406
VL LD+CT++VD T + + + KG T I +I T L D+IL+L G + G
Sbjct: 500 VLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559
Query: 1407 NPQTLLQ 1413
+ LL+
Sbjct: 560 THKELLE 566
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 163/393 (41%), Gaps = 39/393 (9%)
Query: 447 EKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV- 505
K+ + DE R E L +R ++ + E+ + K S + + + L + +
Sbjct: 192 RKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251
Query: 506 -FFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 564
F + + ++ FG + +Q++ + ++ L ++N ++ A
Sbjct: 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASA 311
Query: 565 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCXXXXXXX 624
S +R+ L K +E+A N+ + L N +V ++ ++
Sbjct: 312 SAKRVLEVL---NEKPAIEEADNALA-----LPNVEG---SVSFENVEFRYF----ENTD 356
Query: 625 XXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS------------- 671
+ + GSLVAV+GE GSGKS+L+N I + G +
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 672 GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYI 727
G I+ VPQ + SGTI++N+ +G+ + + E ++A + D ISL G D + +
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIHDFIISLPEGYD-SRV 473
Query: 728 GEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 787
G N SGGQ + + +LDD S+VD + IL + + T
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG--LKRYTKGCTT 531
Query: 788 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+ T + AD ++V+ +G+V G+ +L
Sbjct: 532 FIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 145/263 (55%), Gaps = 9/263 (3%)
Query: 1156 EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215
++ M + + + +D QE+ G + + G +EF+NVT Y AL +IN
Sbjct: 309 QRGMAACQTLFTILDSEQEKDEGKRVIERA---TGDVEFRNVTFTYPGRDVPALRNINLK 365
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
I G V +VGR+G+GKS+I + + R I G+IL+DG ++ + LR + A+V Q+
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 1276 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSVG 1330
LF ++ +N+ + + + E + ++ + GL+T + E+G+ S G
Sbjct: 426 VHLFNDTVANNI-AYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1390
QRQ I +ARALL+ S +L LDE T+ +D ++ +Q A+ K T + IAHR+ST+
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544
Query: 1391 MDEILILDHGHLVEQGNPQTLLQ 1413
DEI++++ G +VE+G LL+
Sbjct: 545 ADEIVVVEDGVIVERGTHNDLLE 567
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 19/206 (9%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYV 677
+L +P G VA++G GSGKS++ + I + G I G +A V
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422
Query: 678 PQVPWILSGTIRDNILFGK--NYDPQSYSETLK-ACTLDVDISLMVGGDMAYIGEKGVNL 734
Q + + T+ +NI + + Y + E + A +D I+ M G IGE GV L
Sbjct: 423 SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGENGVLL 481
Query: 735 SGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
SGGQ + S I +LD+ SA+D + R I A + +T ++ H +
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAI--QAALDELQKNRTSLVIAHRL 539
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL 820
I AD +VV++ G + G+ DL
Sbjct: 540 STIEKADEIVVVEDGVIVERGTHNDL 565
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 144/262 (54%), Gaps = 9/262 (3%)
Query: 1156 EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFT 1215
++ M + + + +D QE+ G + + G +EF+NVT Y AL +IN
Sbjct: 309 QRGMAACQTLFAILDSEQEKDEGKRVIDRA---TGDLEFRNVTFTYPGREVPALRNINLK 365
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
I G V +VGR+G+GKS+I + + R I G IL+DG ++ + LR + A+V Q+
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 1276 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSVG 1330
LF ++ +N+ + ++ + E + ++ + GL+T + E+G+ S G
Sbjct: 426 VHLFNDTVANNI-AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1390
QRQ I +ARALL+ S +L LDE T+ +D ++ +Q A+ K T + IAHR+ST+
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 1391 MDEILILDHGHLVEQGNPQTLL 1412
DEI++++ G +VE+G LL
Sbjct: 545 ADEIVVVEDGIIVERGTHSELL 566
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYV 677
+L +P G VA++G GSGKS++ + I + G I G +A V
Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALV 422
Query: 678 PQVPWILSGTIRDNILFGK--NYDPQSYSETLK-ACTLDVDISLMVGGDMAYIGEKGVNL 734
Q + + T+ +NI + + Y + E + A +D I+ M G IGE GV L
Sbjct: 423 SQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDF-INKMDNGLDTIIGENGVLL 481
Query: 735 SGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
SGGQ + S I +LD+ SA+D + R I A + +T ++ H +
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAI--QAALDELQKNRTSLVIAHRL 539
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL 820
I AD +VV++ G + G+ ++L
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSEL 565
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+G IEF+NV Y L D++FT+ G + +VG +GAGKS+IL LFR I G
Sbjct: 51 KGRIEFENVHFSYADGR-ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---NDDLKIWSVLEKC 1305
I +DG +I LR VVPQ LF ++ DN+ + ND+++ +
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 1306 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1365
H G T V E G+ S G++Q + +AR +LK+ ++ LDE T+ +D +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1366 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1412
Q +++ C T I +AHR+STV+N D+IL++ G +VE+G + LL
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 20/233 (8%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYV 677
S + G +A++G G+GKS++L + ++ G I G I V
Sbjct: 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133
Query: 678 PQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 736
PQ + + TI DNI +G+ +A + I G +GE+G+ LSG
Sbjct: 134 PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 796
G+ + I +LD+ SA+D R I A + +T I+ H +
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAI--QASLAKVCANRTTIVVAHRLST 251
Query: 797 ISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFW--STNEFDTSLHMQKQEM 845
+ AD ++V+ G + G L +Y+ W + +TS + Q M
Sbjct: 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSEDTKPQTM 304
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 125/216 (57%), Gaps = 3/216 (1%)
Query: 1186 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1245
WP G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1305
G+I +DG++ + + R F V+PQ F+F G+ R NLDP + D +IW V ++
Sbjct: 73 TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEV 132
Query: 1306 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
++ +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1364 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1399
I++ + TVI RI +L D+ L+++
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEE 228
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 22/206 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYV 677
S + G V ++G GSGKS+LL++ L ++ T G I G + +
Sbjct: 41 SFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRKAFGVI 99
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 737
PQ +I SGT R N+ + Q + L I G + + G LS G
Sbjct: 100 PQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159
Query: 738 QXXXXXXXXXVYHGSDIYMLDDV---LSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 794
V + I +LD+ L V Q+ R L A T ILC +
Sbjct: 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-----DCTVILCEARI 214
Query: 795 QAISAADMVVVMDKGQVKWIGSSADL 820
+A+ D +V+++ +V+ S +L
Sbjct: 215 EAMLECDQFLVIEENKVRQYDSILEL 240
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 5/223 (2%)
Query: 598 NFNSKDMAVIMQDATCSWYCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSI 657
+N V+M++ T W + + +G L+AV G G+GK+SLL I
Sbjct: 11 EYNLTTTEVVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 66
Query: 658 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 717
+GE+ + G I SG I++ Q WI+ GTI++NI+FG +YD Y +KAC L+ DIS
Sbjct: 67 MGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDIS 126
Query: 718 LMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAI 777
D +GE G+ LSGGQ VY +D+Y+LD +D + I + +
Sbjct: 127 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 186
Query: 778 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 187 C-KLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+NVT ++ L DINF IE G + + G TGAGK+S+L + G+I
Sbjct: 22 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---- 77
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1314
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 78 ---------KHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 128
Query: 1315 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISS 1371
+ + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 129 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 188
Query: 1372 ECKGMTVITIAHRISTVLNMDEILILDHG 1400
T I + ++ + D+ILIL G
Sbjct: 189 LMANKTRILVTSKMEHLKKADKILILHEG 217
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 134 bits (336), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 17/297 (5%)
Query: 1134 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1193
A+ + A V + +F + + + R++E P+ + Q L P+ +G ++
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE--KTPEIDSYSTQGLKPNM-LEGNVQ 1032
Query: 1194 FQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
F V Y +PS+P L ++ ++ G + +VG +G GKS+++ L R G +
Sbjct: 1033 FSGVVFNYPTRPSIPV-LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+DG I V+ LR + +V Q P LF+ S+ +N+ D+ ++ S E +E
Sbjct: 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI---AYGDNSRVVSYEEIVRAAKEA 1148
Query: 1312 E--------AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
T V + G S GQ+Q I +ARAL++ +L LDE T+ +D ++
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1364 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
++Q A+ +G T I IAHR+ST+ N D I+++ +G + E G Q LL + FS
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 134/243 (55%), Gaps = 11/243 (4%)
Query: 1184 PDWPFQGLIEFQNVTMRYKPSLPAA--LHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1241
PD QG +EF+N+ Y PS L +N ++ G V +VG +G GKS+ + + R
Sbjct: 381 PD-NIQGNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 1242 LTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KI 1298
L G + +DG +I VR LR VV Q P LF ++ +N+ + +D+ +I
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR--YGREDVTMDEI 496
Query: 1299 WSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+++ + + + + +T V E G S GQ+Q I +ARAL+++ K+L LDE T+
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1357 VDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1416
+D ++ +++Q A+ +G T I IAHR+STV N D I D G +VEQGN L++++
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG 616
Query: 1417 SVF 1419
F
Sbjct: 617 IYF 619
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 191/480 (39%), Gaps = 82/480 (17%)
Query: 389 TVNLANSFHDAWSLPFQIGVALYLLY-------TQVKFAFVSGLAITILLIPVNKWIANL 441
T LAN DA + G L +++ T + + + G +T+LL+ + IA
Sbjct: 811 TTRLAN---DAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIA-- 865
Query: 442 IANATEKMM------KQKDERIRRTGEILT----HIRTLKMYGWEQIFSSWLMKTRSSEV 491
IA E M K K E + +G+I T + RT+ EQ F + M +S ++
Sbjct: 866 IAGVVEMKMLSGQALKDKKE-LEGSGKIATEAIENFRTVVSLTREQKFET--MYAQSLQI 922
Query: 492 KHLSTRKYLDAWCVFFWATTPTLF----SLFTFGLFALMGHQL----DAAMVFTCLALFN 543
+ + K + + F T ++ + F FG + L+ QL + +VF+ +
Sbjct: 923 PYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAY-LVTQQLMTFENVLLVFSAIVFGA 981
Query: 544 SLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS----NF 599
+ ++SF A +S + R + E+ SY + GL
Sbjct: 982 MAVGQVSSFA---PDYAKATVSASHIIRII---------EKTPEIDSYSTQGLKPNMLEG 1029
Query: 600 NSKDMAVIMQDATCSWYCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLL----- 654
N + V+ T SL + KG +A++G G GKS+++
Sbjct: 1030 NVQFSGVVFNYPT--------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 655 --NSILGEMMLTHGSIHA------SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSET 706
+ + G + L I + V Q P + +I +NI +G N SY E
Sbjct: 1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI 1141
Query: 707 LKAC---TLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSA 763
++A + I + +G+KG LSGGQ + I +LD+ SA
Sbjct: 1142 VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 764 VDAQ---VARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+D + V + L A G +T I+ H + I AD++VV+ G+VK G+ L
Sbjct: 1202 LDTESEKVVQEALDKAREG-----RTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLN-------------SILGEMMLTHGSIHASGSIAYV 677
+L + G VA++G G GKS+ + SI G+ + T + I V
Sbjct: 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKAC----TLDVDISLMVGGDMAYIGEKGVN 733
Q P + + TI +NI +G+ + + E KA D + L D +GE+G
Sbjct: 470 SQEPVLFATTIAENIRYGR--EDVTMDEIEKAVKEANAYDFIMKLPHQFD-TLVGERGAQ 526
Query: 734 LSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHMLQKTRILC 790
LSGGQ + I +LD+ SA+D + V + L A G +T I+
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG-----RTTIVI 581
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + + AD++ D G + G+ +L
Sbjct: 582 AHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 147/297 (49%), Gaps = 17/297 (5%)
Query: 1134 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1193
A+ + A V + +F + + + R++E P+ + Q L P+ +G ++
Sbjct: 976 AIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE--KTPEIDSYSTQGLKPNM-LEGNVQ 1032
Query: 1194 FQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
F V Y +PS+P L ++ ++ G + +VG +G GKS+++ L R G +
Sbjct: 1033 FSGVVFNYPTRPSIPV-LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
+DG I V+ LR + +V Q P LF+ S+ +N+ D+ ++ S E +E
Sbjct: 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENI---AYGDNSRVVSYEEIVRAAKEA 1148
Query: 1312 E--------AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1363
T V + G S GQ+Q I +ARAL++ +L LDE T+ +D ++
Sbjct: 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1364 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1420
++Q A+ +G T I IAHR+ST+ N D I+++ +G + E G Q LL + FS
Sbjct: 1209 VVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Score = 132 bits (333), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 134/243 (55%), Gaps = 11/243 (4%)
Query: 1184 PDWPFQGLIEFQNVTMRYKPSLPAA--LHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1241
PD QG +EF+N+ Y PS L +N ++ G V +VG +G GKS+ + + R
Sbjct: 381 PD-NIQGNLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438
Query: 1242 LTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KI 1298
L G + +DG +I VR LR VV Q P LF ++ +N+ + +D+ +I
Sbjct: 439 LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR--YGREDVTMDEI 496
Query: 1299 WSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
+++ + + + + +T V E G S GQ+Q I +ARAL+++ K+L LDE T+
Sbjct: 497 EKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSA 556
Query: 1357 VDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1416
+D ++ +++Q A+ +G T I IAHR+STV N D I D G +VEQGN L++++
Sbjct: 557 LDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG 616
Query: 1417 SVF 1419
F
Sbjct: 617 IYF 619
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 113/480 (23%), Positives = 191/480 (39%), Gaps = 82/480 (17%)
Query: 389 TVNLANSFHDAWSLPFQIGVALYLLY-------TQVKFAFVSGLAITILLIPVNKWIANL 441
T LAN DA + G L +++ T + + + G +T+LL+ + IA
Sbjct: 811 TTRLAN---DAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIA-- 865
Query: 442 IANATEKMM------KQKDERIRRTGEILT----HIRTLKMYGWEQIFSSWLMKTRSSEV 491
IA E M K K E + +G+I T + RT+ EQ F + M +S ++
Sbjct: 866 IAGVVEMKMLSGQALKDKKE-LEGSGKIATEAIENFRTVVSLTREQKFET--MYAQSLQI 922
Query: 492 KHLSTRKYLDAWCVFFWATTPTLF----SLFTFGLFALMGHQL----DAAMVFTCLALFN 543
+ + K + + F T ++ + F FG + L+ QL + +VF+ +
Sbjct: 923 PYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAY-LVTQQLMTFENVLLVFSAIVFGA 981
Query: 544 SLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS----NF 599
+ ++SF A +S + R + E+ SY + GL
Sbjct: 982 MAVGQVSSFA---PDYAKATVSASHIIRII---------EKTPEIDSYSTQGLKPNMLEG 1029
Query: 600 NSKDMAVIMQDATCSWYCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLL----- 654
N + V+ T SL + KG +A++G G GKS+++
Sbjct: 1030 NVQFSGVVFNYPT--------RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081
Query: 655 --NSILGEMMLTHGSIHA------SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSET 706
+ + G + L I + V Q P + +I +NI +G N SY E
Sbjct: 1082 FYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEI 1141
Query: 707 LKAC---TLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSA 763
++A + I + +G+KG LSGGQ + I +LD+ SA
Sbjct: 1142 VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 764 VDAQ---VARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
+D + V + L A G +T I+ H + I AD++VV+ G+VK G+ L
Sbjct: 1202 LDTESEKVVQEALDKAREG-----RTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 28/210 (13%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLN-------------SILGEMMLTHGSIHASGSIAYV 677
+L + G VA++G G GKS+ + SI G+ + T + I V
Sbjct: 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVV 469
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKAC----TLDVDISLMVGGDMAYIGEKGVN 733
Q P + + TI +NI +G+ + + E KA D + L D +GE+G
Sbjct: 470 SQEPVLFATTIAENIRYGR--EDVTMDEIEKAVKEANAYDFIMKLPHQFD-TLVGERGAQ 526
Query: 734 LSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHMLQKTRILC 790
LSGGQ + I +LD+ SA+D + V + L A G +T I+
Sbjct: 527 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREG-----RTTIVI 581
Query: 791 THNVQAISAADMVVVMDKGQVKWIGSSADL 820
H + + AD++ D G + G+ +L
Sbjct: 582 AHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 5/215 (2%)
Query: 606 VIMQDATCSWYCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665
V+M++ T W + + +G L+AV G G+GK+SLL I+GE+ +
Sbjct: 7 VVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
G I SG I++ Q WI+ GTI++NI+FG +YD Y +KAC L+ DIS D
Sbjct: 63 GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNI 122
Query: 726 YIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE G+ LSGGQ VY +D+Y+LD +D + I + + M K
Sbjct: 123 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC-KLMANK 181
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
TRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+NVT ++ L DINF IE G + + G TGAGK+S+L + G+I
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---- 65
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1314
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 66 ---------KHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 1315 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISS 1371
+ + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 1372 ECKGMTVITIAHRISTVLNMDEILILDHG 1400
T I + ++ + D+ILIL G
Sbjct: 177 LMANKTRILVTSKMEHLKKADKILILHEG 205
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 1/190 (0%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 690
+L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+ GTI++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYH 750
NI+FG +YD Y +KAC L DI+ D +GE GV LSGGQ VY
Sbjct: 118 NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810
+D+Y+LD +D + + + M KTRIL T ++ + AD ++++ +G
Sbjct: 178 DADLYLLDSPFGYLDVFTEEQVFESCVC-KLMANKTRILVTSKMEHLRKADKILILHQGS 236
Query: 811 VKWIGSSADL 820
+ G+ ++L
Sbjct: 237 SYFYGTFSEL 246
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L +IN IE G + I G TG+GK+S+L +L+ G + + GR
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGIIKHSGR 100
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGIS 1326
+ Q ++ G++++N+ D+ + SV++ C +++++ + T + E G++
Sbjct: 101 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 160
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRI 1385
S GQR I LARA+ K + + LD +D T + ++ + T I + ++
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 1386 STVLNMDEILILDHG 1400
+ D+ILIL G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 1/190 (0%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 690
+L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+ GTI++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYH 750
NI+FG +YD Y +KAC L DI+ D +GE GV LSGGQ VY
Sbjct: 118 NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810
+D+Y+LD +D + + + M KTRIL T ++ + AD ++++ +G
Sbjct: 178 DADLYLLDSPFGYLDVFTEEQVFESCVC-KLMANKTRILVTSKMEHLRKADKILILHQGS 236
Query: 811 VKWIGSSADL 820
+ G+ ++L
Sbjct: 237 SYFYGTFSEL 246
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L +IN IE G + I G TG+GK+S+L +L+ G + + GR
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGIIKHSGR 100
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGIS 1326
+ Q ++ G++++N+ D+ + SV++ C +++++ + T + E G++
Sbjct: 101 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 160
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRI 1385
S GQR I LARA+ K + + LD +D T + ++ + T I + ++
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 1386 STVLNMDEILILDHG 1400
+ D+ILIL G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 1/187 (0%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+ +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI+ GTI++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENII 120
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSD 753
G +YD Y +KAC L+ DIS D +GE G+ LSGGQ VY +D
Sbjct: 121 AGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 180
Query: 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813
+Y+LD +D + I + + M KTRIL T ++ + AD ++++ +G +
Sbjct: 181 LYLLDSPFGYLDVLTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILILHEGSSYF 239
Query: 814 IGSSADL 820
G+ ++L
Sbjct: 240 YGTFSEL 246
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 20/212 (9%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ F N ++ P L DINF IE G + + G TGAGK+S+L + G+I
Sbjct: 41 LSFSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI- 95
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 96 ------------KHSGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDI 143
Query: 1312 EAVGLETFV--KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNA 1368
+ + E GI+ S GQR I LARA+ K + + LD +D T I ++
Sbjct: 144 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 203
Query: 1369 ISSECKGMTVITIAHRISTVLNMDEILILDHG 1400
+ T I + ++ + D+ILIL G
Sbjct: 204 VCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 1/187 (0%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+ +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI+ GTI++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENII 120
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSD 753
FG +YD Y +KAC L+ DIS D +GE G+ LS GQ VY +D
Sbjct: 121 FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDAD 180
Query: 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813
+Y+LD +D + I + + M KTRIL T ++ + AD ++++ +G +
Sbjct: 181 LYLLDSPFGYLDVLTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILILHEGSSYF 239
Query: 814 IGSSADL 820
G+ ++L
Sbjct: 240 YGTFSEL 246
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 16/195 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L DINF IE G + + G TGAGK+S+L + G+I GR
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSGR 100
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV--KESGIS 1326
+ Q ++ G++++N+ D+ + SV++ C ++E++ + + E GI+
Sbjct: 101 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 160
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISSECKGMTVITIAHRI 1385
S GQ+ I LARA+ K + + LD +D T I ++ + T I + ++
Sbjct: 161 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 220
Query: 1386 STVLNMDEILILDHG 1400
+ D+ILIL G
Sbjct: 221 EHLKKADKILILHEG 235
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 116/208 (55%), Gaps = 4/208 (1%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L DI+F + + + G +G GKS+I + L R G+I +DG I N + + R +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETFVKESG 1324
V Q + G++R+NL D D +W VL+ + VE + L T V E G
Sbjct: 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG 137
Query: 1325 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1384
+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++Q A+ S KG T + IAHR
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHR 197
Query: 1385 ISTVLNMDEILILDHGHLVEQGNPQTLL 1412
+ST+++ D+I ++ G + G L+
Sbjct: 198 LSTIVDADKIYFIEKGQITGSGKHNELV 225
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 25/213 (11%)
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYVPQVPWIL 684
S++A G G GKS++ + + T G I G I +V Q I+
Sbjct: 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIM 88
Query: 685 SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM-----AYIGEKGVNLSGGQX 739
+GTIR+N+ +G D Y++ LD+ + +M +GE+GV +SGGQ
Sbjct: 89 AGTIRENLTYGLEGD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145
Query: 740 XXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799
I MLD+ +++D++ + + M +T ++ H + I
Sbjct: 146 QRLAIARAFLRNPKILMLDEATASLDSESESMV--QKALDSLMKGRTTLVIAHRLSTIVD 203
Query: 800 ADMVVVMDKGQVKWIGSSADLAVS--LYSGFWS 830
AD + ++KGQ+ G +L + LY+ + S
Sbjct: 204 ADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 1/190 (0%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 690
+L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+ GTI++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYH 750
NI+ G +YD Y +KAC L DI+ D +GE GV LSGGQ VY
Sbjct: 118 NIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810
+D+Y+LD +D + + + M KTRIL T ++ + AD ++++ +G
Sbjct: 178 DADLYLLDSPFGYLDVFTEEQVFESCVC-KLMANKTRILVTSKMEHLRKADKILILHQGS 236
Query: 811 VKWIGSSADL 820
+ G+ ++L
Sbjct: 237 SYFYGTFSEL 246
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L +IN IE G + I G TG+GK+S+L +L+ G + + GR
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGIIKHSGR 100
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGIS 1326
+ Q ++ G++++N+ D+ + SV++ C +++++ + T + E G++
Sbjct: 101 VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 160
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRI 1385
S GQR I LARA+ K + + LD +D T + ++ + T I + ++
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 1386 STVLNMDEILILDHG 1400
+ D+ILIL G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 1/190 (0%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 690
+L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+ GTI++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYH 750
NI+ G +YD Y +KAC L DI+ D +GE GV LSGGQ VY
Sbjct: 118 NIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 177
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810
+D+Y+LD +D + + + M KTRIL T ++ + AD ++++ +G
Sbjct: 178 DADLYLLDSPFGYLDVFTEEQVFESCVC-KLMANKTRILVTSKMEHLRKADKILILHQGS 236
Query: 811 VKWIGSSADL 820
+ G+ ++L
Sbjct: 237 SYFYGTFSEL 246
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 16/195 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L +IN IE G + I G TG+GK+S+L +L+ G + + GR
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGIIKHSGR 100
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGIS 1326
+ Q ++ G++++N+ D+ + SV++ C +++++ + T + E G++
Sbjct: 101 VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 160
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRI 1385
S GQR I LARA+ K + + LD +D T + ++ + T I + ++
Sbjct: 161 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 220
Query: 1386 STVLNMDEILILDHG 1400
+ D+ILIL G
Sbjct: 221 EHLRKADKILILHQG 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+ +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI+ GTI++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSD 753
G +YD Y +KAC L+ DIS D +GE G+ LSGGQ VY +D
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813
+Y+LD +D + I + + M KTRIL T ++ + AD ++++ +G +
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 814 IGSSADL 820
G+ ++L
Sbjct: 239 YGTFSEL 245
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 21/210 (10%)
Query: 1194 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1253
F N ++ P L DINF IE G + + G TGAGK+S+L + G+I
Sbjct: 43 FSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--- 95
Query: 1254 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1313
GR + Q+ ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 96 ----------KHSGRISFCSQNSWIMPGTIKENIIGVSY-DEYRYRSVIKACQLEEDISK 144
Query: 1314 VGLETFV--KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1370
+ + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
Query: 1371 SECKGMTVITIAHRISTVLNMDEILILDHG 1400
T I + ++ + D+ILIL G
Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+ +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI+ GTI++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENII 120
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSD 753
G +YD Y +KAC L+ DIS D +GE G+ LSGGQ VY +D
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813
+Y+LD +D + I + + M KTRIL T ++ + AD ++++ +G +
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 814 IGSSADL 820
G+ ++L
Sbjct: 239 YGTFSEL 245
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 21/212 (9%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
+ F N ++ P L DINF IE G + + G TGAGK+S+L + G+I
Sbjct: 41 LSFSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI- 95
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1311
GR + Q+ ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 96 ------------KHSGRISFCSQNSWIMPGTIKENIIGVSY-DEYRYRSVIKACQLEEDI 142
Query: 1312 EAVGLETFV--KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNA 1368
+ + E GI+ S GQR I LARA+ K + + LD +D T I ++
Sbjct: 143 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
Query: 1369 ISSECKGMTVITIAHRISTVLNMDEILILDHG 1400
+ T I + ++ + D+ILIL G
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 6/215 (2%)
Query: 606 VIMQDATCSWYCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 665
V+M++ T W + + +G L+AV G G+GK+SLL I+GE+ +
Sbjct: 7 VVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 666 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA 725
G I SG I++ Q WI+ GTI++NI+ G +YD Y +KAC L+ DIS D
Sbjct: 63 GKIKHSGRISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNI 121
Query: 726 YIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 785
+GE G+ LSGGQ VY +D+Y+LD +D + I + + M K
Sbjct: 122 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC-KLMANK 180
Query: 786 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 820
TRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 181 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 17/209 (8%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+NVT ++ L DINF IE G + + G TGAGK+S+L + G+I
Sbjct: 10 ENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---- 65
Query: 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1314
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 66 ---------KHSGRISFCSQFSWIMPGTIKENIIGVSY-DEYRYRSVIKACQLEEDISKF 115
Query: 1315 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISS 1371
+ + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 116 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 175
Query: 1372 ECKGMTVITIAHRISTVLNMDEILILDHG 1400
T I + ++ + D+ILIL G
Sbjct: 176 LMANKTRILVTSKMEHLKKADKILILHEG 204
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 105/190 (55%), Gaps = 2/190 (1%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 690
+L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+ GTI++
Sbjct: 58 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKE 117
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYH 750
NI+ G +YD Y +KAC L DI+ D +GE GV LSGGQ VY
Sbjct: 118 NII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYK 176
Query: 751 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 810
+D+Y+LD +D + + + M KTRIL T ++ + AD ++++ +G
Sbjct: 177 DADLYLLDSPFGYLDVFTEEQVFESCVC-KLMANKTRILVTSKMEHLRKADKILILHQGS 235
Query: 811 VKWIGSSADL 820
+ G+ ++L
Sbjct: 236 SYFYGTFSEL 245
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L +IN IE G + I G TG+GK+S+L +L+ G + + GR
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLL-------------MLILGELEASEGIIKHSGR 100
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGIS 1326
+ Q ++ G++++N+ D+ + SV++ C +++++ + T + E G++
Sbjct: 101 VSFCSQFSWIMPGTIKENIIGVSY-DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT 159
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRI 1385
S GQR I LARA+ K + + LD +D T + ++ + T I + ++
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM 219
Query: 1386 STVLNMDEILILDHG 1400
+ D+ILIL G
Sbjct: 220 EHLRKADKILILHQG 234
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 2/187 (1%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 693
+ +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI+ GTI++NI+
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENII 120
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSD 753
G +YD Y +KAC L+ DIS D +GE G+ LS GQ VY +D
Sbjct: 121 -GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDAD 179
Query: 754 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 813
+Y+LD +D + I + + M KTRIL T ++ + AD ++++ +G +
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 814 IGSSADL 820
G+ ++L
Sbjct: 239 YGTFSEL 245
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L DINF IE G + + G TGAGK+S+L + G+I GR
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KHSGR 100
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV--KESGIS 1326
+ Q ++ G++++N+ D+ + SV++ C ++E++ + + E GI+
Sbjct: 101 ISFCSQFSWIMPGTIKENIIGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 1327 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISSECKGMTVITIAHRI 1385
S GQ+ I LARA+ K + + LD +D T I ++ + T I + ++
Sbjct: 160 LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 1386 STVLNMDEILILDHG 1400
+ D+ILIL G
Sbjct: 220 EHLKKADKILILHEG 234
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 5/226 (2%)
Query: 1192 IEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
IEF +V Y K + L INF I GT +VG TG+GKS+I L+R G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKE 1309
+ G N+ +R +VPQ LF +++ N+ ++ D ++ + + +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1310 EVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+EA+ +T V G+ S G+RQ I +AR LLK K++ DE T+++D++T + Q
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1368 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1413
A+ K T+I IAHR+ST+ + + I++L+ G +VE+G + LL+
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 23/204 (11%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYVPQV 680
+P G+ A++G GSGKS++ +L G I G I VPQ
Sbjct: 43 IPSGTTCALVGHTGSGKSTIA-KLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQD 101
Query: 681 PWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 738
+ + TI+ NIL+GK D + T A D +L D +G KG+ LSGG+
Sbjct: 102 TILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWD-TIVGNKGMKLSGGE 160
Query: 739 XXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNVQA 796
+ I + D+ S++D++ ++ A+ L+K R I+ H +
Sbjct: 161 RQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAV---EDLRKNRTLIIIAHRLST 216
Query: 797 ISAADMVVVMDKGQVKWIGSSADL 820
IS+A+ +++++KG++ G+ DL
Sbjct: 217 ISSAESIILLNKGKIVEKGTHKDL 240
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 107 bits (267), Expect = 5e-23, Method: Composition-based stats.
Identities = 81/252 (32%), Positives = 121/252 (48%), Gaps = 32/252 (12%)
Query: 1181 SLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1238
SL+P +GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++
Sbjct: 7 SLAP-LNMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 1239 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1298
L L GG++L+DG ++ L + A V Q P LF S R+N I
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------I 113
Query: 1299 WSVLEKCHVKEEVEAVGLE---------------TFVKESGISFSVGQRQLICLARALLK 1343
L + EE+ AV +E T V E+G S GQRQ + LARAL++
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173
Query: 1344 SSKVLCLDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGH 1401
++L LD+ T+ +DA +Q + S E TV+ I H++S IL L G
Sbjct: 174 KPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGS 233
Query: 1402 LVEQGNPQTLLQ 1413
+ EQG L++
Sbjct: 234 VCEQGTHLQLME 245
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 27/202 (13%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSS---LLNSIL----------GEMMLTHGSIHASGSIAYV 677
+ L G + A++G GSGKS+ LL ++ GE ++ + + +A V
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD----ISLMVGGDMAYIGEKGVN 733
Q P + + R+NI +G P E + A ++ IS G +GE G
Sbjct: 99 GQEPLLFGRSFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156
Query: 734 LSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQKTRIL 789
LSGGQ + + +LD SA+DA +V R + + P +T +L
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYES----PEWASRTVLL 212
Query: 790 CTHNVQAISAADMVVVMDKGQV 811
TH + A ++ + +G V
Sbjct: 213 ITHQLSLAERAHHILFLKEGSV 234
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 80/252 (31%), Positives = 120/252 (47%), Gaps = 32/252 (12%)
Query: 1181 SLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1238
SL+P +GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++
Sbjct: 7 SLAP-LNMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 1239 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1298
L L GG++L+DG ++ L + A V Q P LF S R+N I
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------I 113
Query: 1299 WSVLEKCHVKEEVEAVGLE---------------TFVKESGISFSVGQRQLICLARALLK 1343
L + EE+ AV +E T V E+G +VGQRQ + LARAL++
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIR 173
Query: 1344 SSKVLCLDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGH 1401
++L LD T+ +DA +Q + S E TV+ I ++S IL L G
Sbjct: 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGS 233
Query: 1402 LVEQGNPQTLLQ 1413
+ EQG L++
Sbjct: 234 VCEQGTHLQLME 245
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 27/202 (13%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSS---LLNSIL----------GEMMLTHGSIHASGSIAYV 677
+ L G + A++G GSGKS+ LL ++ GE ++ + + +A V
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD----ISLMVGGDMAYIGEKGVN 733
Q P + + R+NI +G P E + A ++ IS G +GE G
Sbjct: 99 GQEPLLFGRSFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156
Query: 734 LSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQKTRIL 789
L+ GQ + + +LD+ SA+DA +V R + + P +T +L
Sbjct: 157 LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES----PEWASRTVLL 212
Query: 790 CTHNVQAISAADMVVVMDKGQV 811
T + A ++ + +G V
Sbjct: 213 ITQQLSLAERAHHILFLKEGSV 234
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 103 bits (257), Expect = 7e-22, Method: Composition-based stats.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 9/236 (3%)
Query: 1188 FQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1245
+GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++ L L
Sbjct: 11 LEGLVQFQDVSFAY-PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 1246 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN----LDPFHMNDDLKIWSV 1301
GGQ+L+DG + R L + A V Q P +F SL++N L +++ +V
Sbjct: 70 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 129
Query: 1302 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1361
H G +T V E+G S GQRQ + LARAL++ VL LD+ T+ +DA +
Sbjct: 130 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Query: 1362 ASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
++ + S E +V+ I +S V D IL L+ G + E G Q L++ +
Sbjct: 190 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 245
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 21/208 (10%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSS---LLNSIL----GEMML--------THGSIHASGSIA 675
+ L G + A++G GSGKS+ LL ++ G+++L H +H +A
Sbjct: 37 TFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ--VA 94
Query: 676 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY---IGEKGV 732
V Q P + ++++NI +G P + E A S + G Y + E G
Sbjct: 95 AVGQEPQVFGRSLQENIAYGLTQKP-TMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGS 153
Query: 733 NLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 792
LSGGQ + + +LDD SA+DA + P ++ +L T
Sbjct: 154 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ 213
Query: 793 NVQAISAADMVVVMDKGQVKWIGSSADL 820
++ + AD ++ ++ G ++ G+ L
Sbjct: 214 HLSLVEQADHILFLEGGAIREGGTHQQL 241
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 103 bits (257), Expect = 7e-22, Method: Composition-based stats.
Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 32/252 (12%)
Query: 1181 SLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1238
SL+P +GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++
Sbjct: 7 SLAP-LNMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 1239 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1298
L L GG++L+DG ++ L + A V Q P LF S R+N I
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------I 113
Query: 1299 WSVLEKCHVKEEVEAVGLE---------------TFVKESGISFSVGQRQLICLARALLK 1343
L + EE+ AV +E T V E+G S GQRQ + LARAL++
Sbjct: 114 AYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173
Query: 1344 SSKVLCLDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGH 1401
++L LD T+ +DA +Q + S E TV+ I ++S IL L G
Sbjct: 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGS 233
Query: 1402 LVEQGNPQTLLQ 1413
+ EQG L++
Sbjct: 234 VCEQGTHLQLME 245
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 27/202 (13%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSS---LLNSIL----------GEMMLTHGSIHASGSIAYV 677
+ L G + A++G GSGKS+ LL ++ GE ++ + + +A V
Sbjct: 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAV 98
Query: 678 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD----ISLMVGGDMAYIGEKGVN 733
Q P + + R+NI +G P E + A ++ IS G +GE G
Sbjct: 99 GQEPLLFGRSFRENIAYGLTRTPTM--EEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156
Query: 734 LSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQKTRIL 789
LSGGQ + + +LD+ SA+DA +V R + + P +T +L
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES----PEWASRTVLL 212
Query: 790 CTHNVQAISAADMVVVMDKGQV 811
T + A ++ + +G V
Sbjct: 213 ITQQLSLAERAHHILFLKEGSV 234
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 10/211 (4%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI--INTPVRDLR 1266
L IN I G V ++G +G+GKS+ L L L G+I++DG+N+ +T + +R
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 78
Query: 1267 GRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVK--EEVEAVGLETFVKES 1323
+V Q LF ++ +N+ M ++ W EK K E ++ VGL+
Sbjct: 79 EEVGMVFQRFNLFPHMTVLNNITLAPMK--VRKWP-REKAEAKAMELLDKVGLKDKAHAY 135
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ-TASILQNAISSECKGMTVITIA 1382
S S GQ Q + +ARAL K++ DE T+ +D + +L +GMT++ +
Sbjct: 136 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 195
Query: 1383 HRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
H + + D +L +D G+++E+G P+ L
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 226
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 78.6 bits (192), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 10/211 (4%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI--INTPVRDLR 1266
L IN I G V ++G +G+GKS+ L L L G+I++DG+N+ +T + +R
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 1267 GRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVK--EEVEAVGLETFVKES 1323
+V Q LF ++ +N+ M ++ W EK K E ++ VGL+
Sbjct: 100 EEVGMVFQRFNLFPHMTVLNNITLAPMK--VRKWP-REKAEAKAMELLDKVGLKDKAHAY 156
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ-TASILQNAISSECKGMTVITIA 1382
S S GQ Q + +ARAL K++ DE T+ +D + +L +GMT++ +
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216
Query: 1383 HRISTVLNM-DEILILDHGHLVEQGNPQTLL 1412
H + + D +L +D G+++E+G P+ L
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.3 bits (181), Expect = 5e-13, Method: Composition-based stats.
Identities = 67/241 (27%), Positives = 119/241 (49%), Gaps = 29/241 (12%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++ D
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 1255 LNIINTPVRDLRGRFAVVPQSP---FLFEG-SLRDNLDPFHMNDDLKIWSV-LEKCHVKE 1309
+ + G+ V P+ +F+ +L NL F N + ++ + K +++
Sbjct: 67 RLVASN------GKLIVPPEDRKIGMVFQTWALYPNLTAFE-NIAFPLTNMKMSKEEIRK 119
Query: 1310 EVEAVG--------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ- 1360
VE V L F +E S GQ+Q + LARAL+K +L LDE +N+DA+
Sbjct: 120 RVEEVAKILDIHHVLNHFPRE----LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1361 --TASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECS 1417
+A L + S G+T++ ++H + + + D + +L G LV+ G P+ L + S
Sbjct: 176 RDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234
Query: 1418 V 1418
+
Sbjct: 235 I 235
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 118/241 (48%), Gaps = 29/241 (12%)
Query: 1195 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254
+NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++ D
Sbjct: 7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD 66
Query: 1255 LNIINTPVRDLRGRFAVVPQSP---FLFEG-SLRDNLDPFHMNDDLKIWSV-LEKCHVKE 1309
+ + G+ V P+ +F+ +L NL F N + ++ + K +++
Sbjct: 67 RLVASN------GKLIVPPEDRKIGMVFQTWALYPNLTAFE-NIAFPLTNMKMSKEEIRK 119
Query: 1310 EVEAVG--------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ- 1360
VE V L F +E S Q+Q + LARAL+K +L LDE +N+DA+
Sbjct: 120 RVEEVAKILDIHHVLNHFPRE----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1361 --TASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECS 1417
+A L + S G+T++ ++H + + + D + +L G LV+ G P+ L + S
Sbjct: 176 RDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234
Query: 1418 V 1418
+
Sbjct: 235 I 235
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 10/242 (4%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IEF V Y P ++ ++F I G VG++G +G+GK++IL + L G +
Sbjct: 15 IEFVGVEKIY-PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1310
+ G + + P + + +V Q+ LF+ ++ DN+ F + + ++ V+E
Sbjct: 74 IGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVS-FGLREK-RVPKDEMDARVREL 129
Query: 1311 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1370
+ + LE++ S GQ+Q + LARAL +VL DE A +D Q L+ +
Sbjct: 130 LRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVR 189
Query: 1371 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVRAS 1426
+ G+T + + H L + D +L+L G++ + G P+ + + ++F +SF+ S
Sbjct: 190 QVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIGES 249
Query: 1427 TM 1428
+
Sbjct: 250 NV 251
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 70.5 bits (171), Expect = 7e-12, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 9/215 (4%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVRDL 1265
AL IN I+ G I+G G GKS++ + G+IL D ++ + L
Sbjct: 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 1266 RGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1323
R +V Q P LF S+ ++ +N L + ++ V ++ G+E +
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR--VDNALKRTGIEHLKDKP 140
Query: 1324 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITI 1381
S GQ++ + +A L+ KVL LDE TA +D S + + K G+T+I
Sbjct: 141 THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA 200
Query: 1382 AHRISTV-LNMDEILILDHGHLVEQGNPQTLLQDE 1415
H I V L D + ++ G ++ QGNP+ + ++
Sbjct: 201 THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 66.6 bits (161), Expect = 9e-11, Method: Composition-based stats.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 42/237 (17%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
I+ +N+ ++ AL++IN I+ G + ++G +G+GKS++L + + G+I
Sbjct: 4 IKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 1252 VDGLNIINTPVRD-----LRGRFAVVPQS--------PFLFEGSLRDNLDPFHMNDDLKI 1298
D ++ P +D + +A+ P P + R+ +D
Sbjct: 62 FDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK--------- 112
Query: 1299 WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
V+E + + ++ + S GQ+Q + +ARAL+K +VL LDE +N+D
Sbjct: 113 -------KVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 1359 AQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1408
A +L+ + +E K G+T + + H + L M D I ++ G +++ G P
Sbjct: 166 A----LLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTP 218
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 31/206 (15%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP--------- 681
+L + G +A++G GSGKS+LL +I G T G I+ V ++P
Sbjct: 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK--DVTELPPKDRNVGLV 80
Query: 682 ---WIL--SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN--- 733
W L T+ NI F E KA ++D + M +I +K +N
Sbjct: 81 FQNWALYPHMTVYKNIAFPL--------ELRKAPREEIDKKVREVAKMLHI-DKLLNRYP 131
Query: 734 --LSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 791
LSGGQ + ++ +LD+ LS +DA + + + L T + T
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVT 191
Query: 792 HN-VQAISAADMVVVMDKGQVKWIGS 816
H+ +A++ AD + V+ +G++ +G+
Sbjct: 192 HDQAEALAMADRIAVIREGEILQVGT 217
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 121/238 (50%), Gaps = 15/238 (6%)
Query: 1191 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
L+DG ++ T + + A V Q+ LF +++ NL+ F M ++ + + V +
Sbjct: 58 LLDGKDV--TDLSPEKHDIAFVYQNYSLFPHMNVKKNLE-FGM----RMKKIKDPKRVLD 110
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
+ +E + + ++ S G++Q + LARAL+ + K+L LDE + +D +T + +
Sbjct: 111 TARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 1370 S--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECS-VFSSFV 1423
S + +TV+ I H + M D I ++ G L++ G P+ + + +SFV
Sbjct: 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 42/214 (19%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------IAYVPQ 679
SL + G ++G G+GK+ L I G + G I G IA+V Q
Sbjct: 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79
Query: 680 ----VPWILSGTIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 731
P + ++ N+ FG K DP+ +T + ++ +
Sbjct: 80 NYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-----------HLLDRNP 125
Query: 732 VNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQV---ARWILSNAIMGPHMLQKTRI 788
+ LSGG+ + I +LD+ LSA+D + AR +LS H K +
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL----HKKNKLTV 181
Query: 789 L-CTHN-VQAISAADMVVVMDKGQVKWIGSSADL 820
L TH+ +A AD + V+ G++ +G ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 17/245 (6%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ QNVT + + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEVVVS--KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1307
+ + +TP + RG +V QS L+ S+ +N M+ LK+ ++ V
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHLSVAEN-----MSFGLKLAGAKKEVINQRV 114
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+ E + L + + S GQRQ + + R L+ V LDE +N+DA ++
Sbjct: 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174
Query: 1368 AISSECK--GMTVITIAH-RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1423
IS K G T+I + H ++ + D+I++LD G + + G P L F + F+
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 234
Query: 1424 RASTM 1428
+ M
Sbjct: 235 GSPKM 239
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGSIAYVPQ 679
+L + +G V +G G GKS+LL I G +T G + A + V Q
Sbjct: 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82
Query: 680 ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
P + ++ +N+ FG + E + V L + + K LS
Sbjct: 83 SYALYPHL---SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLA---HLLDRKPKALS 135
Query: 736 GGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHN- 793
GGQ + +++LD+ LS +DA + R + I H L +T I TH+
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFD 835
V+A++ AD +VV+D G+V +G +L A +GF + + +
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 17/245 (6%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ QNVT + + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEVVVSK--DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1307
+ + +TP + RG +V QS L+ S+ +N M+ LK+ ++ V
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHLSVAEN-----MSFGLKLAGAKKEVINQRV 114
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+ E + L + + S GQRQ + + R L+ V LDE +N+DA ++
Sbjct: 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174
Query: 1368 AISSECK--GMTVITIAH-RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1423
IS K G T+I + H ++ + D+I++LD G + + G P L F + F+
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 234
Query: 1424 RASTM 1428
+ M
Sbjct: 235 GSPKM 239
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGSIAYVPQ 679
+L + +G V +G G GKS+LL I G +T G + A + V Q
Sbjct: 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82
Query: 680 ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
P + ++ +N+ FG + E + V L + + K LS
Sbjct: 83 SYALYPHL---SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLA---HLLDRKPKALS 135
Query: 736 GGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHN- 793
GGQ + +++LD+ LS +DA + R + I H L +T I TH+
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFD 835
V+A++ AD +VV+D G+V +G +L A +GF + + +
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 25/233 (10%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L I+F IE G G++G GAGK++ L + L G + V G N++ P ++R
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-HEVRKL 89
Query: 1269 FAVVPQSPFLFEGSLRDN--------LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1320
+ +P+ G+ R+ + F+ + +I ++E+ E GL +
Sbjct: 90 ISYLPEEA----GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIAGLGEKI 140
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVI 1379
K+ ++S G + + +ARAL+ + ++ LDE T+ +D A ++ + + G+T++
Sbjct: 141 KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 1380 TIAHRISTVLNM-DEILILDHGHLVEQGNPQTL-----LQDECSVFSSFVRAS 1426
+H + V + D I ++ +G +VE G + L Q+ VF V+ S
Sbjct: 201 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCS 253
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 63.9 bits (154), Expect = 5e-10, Method: Composition-based stats.
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 43/258 (16%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ +N+T R+ A++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 12 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 1252 VDGLNIINTPVRD-----LRGRFAVVPQS--------PFLFEGSLRDNLDPFHMNDDLKI 1298
++ P +D + +AV P P + +D +D
Sbjct: 70 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK--------- 120
Query: 1299 WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
V+ E + +E + S GQRQ + +ARA++ VL +DE +N+D
Sbjct: 121 -------RVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1359 AQTASILQNAISSECKGM------TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
A+ L+ A+ +E K + T I + H + M D I +++ G L++ G+P +
Sbjct: 174 AK----LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229
Query: 1412 LQDECSVF-SSFVRASTM 1428
SVF ++F+ A M
Sbjct: 230 YLRPNSVFVATFIGAPEM 247
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH-ASGSIAYVPQVPWILSGTIR 689
+L + G + ++G G GK++ L I G T G I+ + Y+P +S +
Sbjct: 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90
Query: 690 DNILFGKN--YDPQSYSETLKACTLD-VDISLMVGGDMAYIGE----KGVNLSGGQXXXX 742
++ Y+ ++ +K D +D + ++ I E LSGGQ
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 150
Query: 743 XXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN-VQAISAAD 801
+ D+ ++D+ LS +DA++ + + L+ T I TH+ V+A++ D
Sbjct: 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210
Query: 802 MVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
+ VM++GQ+ IGS ++ + S F +T
Sbjct: 211 RIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 240
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 63.9 bits (154), Expect = 5e-10, Method: Composition-based stats.
Identities = 62/258 (24%), Positives = 115/258 (44%), Gaps = 43/258 (16%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ +N+T R+ A++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 13 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 70
Query: 1252 VDGLNIINTPVRD-----LRGRFAVVPQS--------PFLFEGSLRDNLDPFHMNDDLKI 1298
++ P +D + +AV P P + +D +D
Sbjct: 71 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK--------- 121
Query: 1299 WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1358
V+ E + +E + S GQRQ + +ARA++ VL +DE +N+D
Sbjct: 122 -------RVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
Query: 1359 AQTASILQNAISSECKGM------TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1411
A+ L+ A+ +E K + T I + H + M D I +++ G L++ G+P +
Sbjct: 175 AK----LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230
Query: 1412 LQDECSVF-SSFVRASTM 1428
SVF ++F+ A M
Sbjct: 231 YLRPNSVFVATFIGAPEM 248
Score = 50.1 bits (118), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 9/210 (4%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH-ASGSIAYVPQVPWILSGTIR 689
+L + G + ++G G GK++ L I G T G I+ + Y+P +S +
Sbjct: 32 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 91
Query: 690 DNILFGKN--YDPQSYSETLKACTLD-VDISLMVGGDMAYIGE----KGVNLSGGQXXXX 742
++ Y+ ++ +K D +D + ++ I E LSGGQ
Sbjct: 92 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV 151
Query: 743 XXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN-VQAISAAD 801
+ D+ ++D+ LS +DA++ + + L+ T I TH+ V+A++ D
Sbjct: 152 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 211
Query: 802 MVVVMDKGQVKWIGSSADLAVSLYSGFWST 831
+ VM++GQ+ IGS ++ + S F +T
Sbjct: 212 RIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 241
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 17/245 (6%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
++ QNVT + + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEVVVS--KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1307
+ + +TP + RG +V QS L+ S+ +N M+ LK+ ++ V
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHLSVAEN-----MSFGLKLAGAKKEVINQRV 114
Query: 1308 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
+ E + L + + S GQRQ + + R L+ V LD+ +N+DA ++
Sbjct: 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRI 174
Query: 1368 AISSECK--GMTVITIAH-RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1423
IS K G T+I + H ++ + D+I++LD G + + G P L F + F+
Sbjct: 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 234
Query: 1424 RASTM 1428
+ M
Sbjct: 235 GSPKM 239
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 29/226 (12%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGSIAYVPQ 679
+L + +G V +G G GKS+LL I G +T G + A + V Q
Sbjct: 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82
Query: 680 ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 735
P + ++ +N+ FG + E + V L + + K LS
Sbjct: 83 SYALYPHL---SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLA---HLLDRKPKALS 135
Query: 736 GGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHN- 793
GGQ + +++LD LS +DA + R + I H L +T I TH+
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTHDQ 194
Query: 794 VQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFD 835
V+A++ AD +VV+D G+V +G +L A +GF + + +
Sbjct: 195 VEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMN 240
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 43/230 (18%)
Query: 1192 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1251
IE +V+ RY L D+N E G +VG+ G+GK+++L L L G+I
Sbjct: 12 IELNSVSFRYNGDY--VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA-AAGEIF 68
Query: 1252 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDD---------------L 1296
+DG P PFL LR N+ N L
Sbjct: 69 LDG-----------------SPADPFL----LRKNVGYVFQNPSSQIIGATVEEDVAFSL 107
Query: 1297 KIWSVLE---KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1353
+I + E + +K+ +E VGL ++ S GQ+Q + +A L + ++ L LDE
Sbjct: 108 EIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEP 167
Query: 1354 TANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
+ +D + I Q S + +G +I + H + + +MD IL + +G +
Sbjct: 168 VSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 24/195 (12%)
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------IAYVPQVP--WIL 684
G + V+G+ GSGK++LL IL ++ G I GS + YV Q P I+
Sbjct: 37 GKIYVVVGKNGSGKTTLL-KILAGLLAAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQII 95
Query: 685 SGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXX 741
T+ +++ F D + +K V +S + D +NLSGGQ
Sbjct: 96 GATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADP-------LNLSGGQKQR 148
Query: 742 XXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAAD 801
+ + LD+ +S +D R I + K IL TH ++ + D
Sbjct: 149 LAIASMLARDTRFLALDEPVSMLDPPSQREIFQ-VLESLKNEGKGIILVTHELEYLDDMD 207
Query: 802 MVVVMDKGQVKWIGS 816
++ + G + + GS
Sbjct: 208 FILHISNGTIDFCGS 222
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1191 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I+ N+T + AL++++ + G G++G +GAGKS+++ + L G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1249 QILVDGLNIINTPVRDL---RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLE 1303
+LVDG + +L R + ++ Q L ++ N+ P +++ K
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV--- 117
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTA 1362
K V E + VGL + S GQ+Q + +ARAL + KVL DE T+ +D A T
Sbjct: 118 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 1363 SILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1405
SIL+ I+ G+T++ I H + V + D + ++ +G L+EQ
Sbjct: 178 SILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQ 222
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 30/203 (14%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------------I 674
SL +P G + VIG G+GKS+L+ + T GS+ G I
Sbjct: 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI 84
Query: 675 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK--- 730
+ Q +LS T+ N+ D E + T ++ +VG +G+K
Sbjct: 85 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVG-----LGDKHDS 136
Query: 731 -GVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
NLSGGQ + + + D+ SA+D R IL L T +L
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196
Query: 790 CTHNVQAISA-ADMVVVMDKGQV 811
TH + + D V V+ G++
Sbjct: 197 ITHEMDVVKRICDCVAVISNGEL 219
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 31/241 (12%)
Query: 1190 GLIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1246
G IE NV+ + P AL +++ I G + + G TG+GKS++L + L
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 1247 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD----------NLDPFHMNDDL 1296
G +L DG +R G P+ F E + + DP +
Sbjct: 63 SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL---- 118
Query: 1297 KIWSVLEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1354
VK+ +E VGL ++F S G+++ + +A ++ +L LDE
Sbjct: 119 ----------VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 168
Query: 1355 ANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1412
+D + + L + + G TVI I+H I TV+N +D +++L+ G V G L
Sbjct: 169 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 228
Query: 1413 Q 1413
+
Sbjct: 229 E 229
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 58/269 (21%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------SIAYVPQV 680
SL + +G + V G GSGKS+LL + G + T G + G +I Q
Sbjct: 29 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQY 88
Query: 681 P--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIG--------E 729
P + + D + F KN+ P D D +V M ++G
Sbjct: 89 PEDQFFAERVFDEVAFAVKNFYP------------DRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 730 KGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LSGG+ + H DI +LD+ L +D + + L + L KT IL
Sbjct: 137 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE-GKTDLLRIVEKWKTLGKTVIL 195
Query: 790 CTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMR-- 846
+H+++ I+ D VVV++KG+ + G+ + ++K + R
Sbjct: 196 ISHDIETVINHVDRVVVLEKGKKVFDGTRMEF-------------------LEKYDPRFF 236
Query: 847 TNASSANKQILLQEKDVVSVSDDAQEIIE 875
T+ ++++L+ +D S+SDD E++E
Sbjct: 237 TSKMLVMRRLVLKGEDPFSMSDD--ELLE 263
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1191 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I+ N+T + AL++++ + G G++G +GAGKS+++ + L G
Sbjct: 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83
Query: 1249 QILVDGLNIINTPVRDL---RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLE 1303
+LVDG + +L R + ++ Q L ++ N+ P +++ K
Sbjct: 84 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV--- 140
Query: 1304 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTA 1362
K V E + VGL + S GQ+Q + +ARAL + KVL D+ T+ +D A T
Sbjct: 141 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200
Query: 1363 SILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1405
SIL+ I+ G+T++ I H + V + D + ++ +G L+EQ
Sbjct: 201 SILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNGELIEQ 245
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 30/203 (14%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------SI 674
SL +P G + VIG G+GKS+L+ + T GS+ G I
Sbjct: 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI 107
Query: 675 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK--- 730
+ Q +LS T+ N+ D E + T ++ +VG +G+K
Sbjct: 108 GMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVG-----LGDKHDS 159
Query: 731 -GVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
NLSGGQ + + + D SA+D R IL L T +L
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
Query: 790 CTHNVQAISA-ADMVVVMDKGQV 811
TH + + D V V+ G++
Sbjct: 220 ITHEMDVVKRICDCVAVISNGEL 242
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 31/239 (12%)
Query: 1192 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
IE NV+ + P AL +++ I G + + G TG+GKS++L + L G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD----------NLDPFHMNDDLKI 1298
+L DG +R G P+ F E + + DP +
Sbjct: 63 DVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL------ 116
Query: 1299 WSVLEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1356
VK+ +E VGL ++F S G+++ + +A ++ +L LDE
Sbjct: 117 --------VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 1357 VDAQTASILQNAISS-ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1413
+D + + L + + G TVI I+H I TV+N +D +++L+ G V G L+
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 58/269 (21%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------SIAYVPQV 680
SL + +G + V G GSGKS+LL + G + T G + G +I Q
Sbjct: 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQY 86
Query: 681 P--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIG--------E 729
P + + D + F KN+ P D D +V M ++G
Sbjct: 87 PEDQFFAERVFDEVAFAVKNFYP------------DRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 730 KGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
LSGG+ + H DI +LD+ L +D + + L + L KT IL
Sbjct: 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE-GKTDLLRIVEKWKTLGKTVIL 193
Query: 790 CTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMR-- 846
+H+++ I+ D VVV++KG+ + G+ + ++K + R
Sbjct: 194 ISHDIETVINHVDRVVVLEKGKKVFDGTRMEF-------------------LEKYDPRFF 234
Query: 847 TNASSANKQILLQEKDVVSVSDDAQEIIE 875
T+ ++++L+ +D S+SDD E++E
Sbjct: 235 TSKMLVMRRLVLKGEDPFSMSDD--ELLE 261
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 60.8 bits (146), Expect = 5e-09, Method: Composition-based stats.
Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 11/222 (4%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDL 1265
A+ ++F ++ G V ++G +G GK++ L L + G+I D + + + P R++
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV 77
Query: 1266 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1325
F P + ++ +N+ F + +EK V E + ++ +
Sbjct: 78 GMVFQNYALYPHM---TVFENI-AFPLRARRISKDEVEK-RVVEIARKLLIDNLLDRKPT 132
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVITIAH 1383
S GQ+Q + LARAL+K KVL DE +N+DA I++ I + G+T + + H
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 1384 RISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1423
+ + M I + + G LV+ G P + ++F +SF+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFI 234
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 46/254 (18%)
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY-VP----QVPWILSG----- 686
G VA++G G GK++ L + G T G I+ + +P +V +
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP 88
Query: 687 --TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXX 744
T+ +NI F S E K +++ L++ + K LSGGQ
Sbjct: 89 HMTVFENIAFPLRARRISKDEVEKR-VVEIARKLLIDN---LLDRKPTQLSGGQQQRVAL 144
Query: 745 XXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHN-VQAISAA 800
+ + + D+ LS +DA + R I+ I H+ Q+ T + TH+ +A++ A
Sbjct: 145 ARALVKQPKVLLFDEPLSNLDANL-RMIMRAEI--KHLQQELGITSVYVTHDQAEAMTMA 201
Query: 801 DMVVVMDKGQVKWIG-------SSADLAVSLYSGFWSTN---EFDTSLHMQKQEMRTNAS 850
+ V ++G++ G S ++ V+ + G TN +F S+
Sbjct: 202 SRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVE----------- 250
Query: 851 SANKQILLQEKDVV 864
NKQ +L+ DV+
Sbjct: 251 --NKQTILKRDDVI 262
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 39/237 (16%)
Query: 1191 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I+ +NVT YK + AL ++N I+ G V I+G +G+GKS++LN + L G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1249 QILVDGLNI-------INTPVRDLRG----RFAVVP--------QSPFLFE--GSLRDNL 1287
++ +D + + RD G +F ++P + P +F+ G+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----- 115
Query: 1288 DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347
M+ + + LE C E+E E F S GQ+Q + +ARAL + +
Sbjct: 116 ----MSGEERRKRALE-CLKMAELE----ERFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 1348 LCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
+ D+ T +D++T + + +E G TV+ + H I+ + I+ L G +
Sbjct: 167 ILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 22/226 (9%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1265
A+ D++ I+ G + ++G +G GK++ L + L GQI ++ N++ P + +
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED-NLVADPEKGVFV 79
Query: 1266 ---RGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1320
A V QS L+ ++ DN+ P + K ++K V+E E +GL +
Sbjct: 80 PPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPK--QEIDK-RVREVAEXLGLTELL 136
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK------ 1374
S GQRQ + L RA+++ KV DE +N+DA+ L+ +E K
Sbjct: 137 NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK----LRVKXRAELKKLQRQL 192
Query: 1375 GMTVITIAH-RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1419
G+T I + H ++ D I + + G L + G P + + F
Sbjct: 193 GVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTF 238
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 46/208 (22%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ----VP----- 681
SL + G + ++G G GK++ L I G T G I+ ++ P+ VP
Sbjct: 26 SLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKERD 85
Query: 682 -------WIL--SGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 729
+ L T+ DNI F + Q + ++ + ++ + +
Sbjct: 86 VAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTEL-------LNR 138
Query: 730 KGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
K LSGGQ + +++ D+ LS +DA++ + L T I
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY 198
Query: 790 CTHN-VQAISAADMVVVMDKGQVKWIGS 816
TH+ V+A + D + V +KG+++ +G+
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 13/207 (6%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1265
AL++++ + G G++G +GAGKS+++ + L G +LVDG + +L
Sbjct: 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102
Query: 1266 -RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE 1322
R + + Q L ++ N+ P +++ K K V E + VGL
Sbjct: 103 ARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV---KRRVTELLSLVGLGDKHDS 159
Query: 1323 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMTVI 1379
+ S GQ+Q + +ARAL + KVL D+ T+ +D A T SIL+ I+ G+T++
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTIL 218
Query: 1380 TIAHRISTVLNM-DEILILDHGHLVEQ 1405
I H V + D + ++ +G L+EQ
Sbjct: 219 LITHEXDVVKRICDCVAVISNGELIEQ 245
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 30/203 (14%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------SI 674
SL +P G + VIG G+GKS+L+ + T GS+ G I
Sbjct: 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQI 107
Query: 675 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK--- 730
+ Q +LS T+ N+ D E + T ++ +VG +G+K
Sbjct: 108 GXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVG-----LGDKHDS 159
Query: 731 -GVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 789
NLSGGQ + + + D SA+D R IL L T +L
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
Query: 790 CTHNVQAISA-ADMVVVMDKGQV 811
TH + D V V+ G++
Sbjct: 220 ITHEXDVVKRICDCVAVISNGEL 242
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 39/237 (16%)
Query: 1191 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+++ +NVT YK + AL ++N I+ G V I+G +G+GKS++LN + L G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1249 QILVDGLNI-------INTPVRDLRG----RFAVVP--------QSPFLFE--GSLRDNL 1287
++ +D + + RD G +F ++P + P +F+ G+
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----- 115
Query: 1288 DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1347
M+ + + LE C E+E E F S GQ+Q + +ARAL + +
Sbjct: 116 ----MSGEERRKRALE-CLKMAELE----ERFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 1348 LCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
+ D+ T +D++T + + +E G TV+ + H I+ + I+ L G +
Sbjct: 167 ILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1265
A+ +++ ++ G + ++G +G GK++ L + L GQI + G ++ P + +
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFV 76
Query: 1266 --RGR-FAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1320
+ R A+V QS L+ ++ DN+ P + K+ V+E E +GL +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELL 133
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK------ 1374
S GQRQ + L RA+++ +V +DE +N+DA+ L+ + +E K
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK----LRVRMRAELKKLQRQL 189
Query: 1375 GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVRASTM 1428
G+T I + H + M D I +++ G L + G+P + + F + F+ + M
Sbjct: 190 GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPM 245
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 690
SL + G + ++G G GK++ L I G + G I+ + P+ + RD
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 691 NILFGKNY---------DPQSYSETL-KACTLDVDISLMVGGDMAYIGE----KGVNLSG 736
+ ++Y D ++ L K ++D + ++ + E K LSG
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSG 142
Query: 737 GQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN-VQ 795
GQ + ++++D+ LS +DA++ + + L T I TH+ V+
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202
Query: 796 AISAADMVVVMDKGQVKWIGSSADL----AVSLYSGF 828
A++ D + VM++G ++ +GS ++ A + +GF
Sbjct: 203 AMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGF 239
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
AL ++ ++ G I+G G+GKS+++N + G++ + +I N +L
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY- 80
Query: 1268 RFAVVP--QSPF-LFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVE----AVGLETF 1319
+ +V Q+P L E ++ +NL +N + + S+ K + +E E A + F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 1320 VKESGI------SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSE 1372
+K S + S GQ +L+ + RAL+ + K++ +D+ A V A I + + +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 1373 CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406
KG+T + I HR+ VLN +D + ++ +G ++ +G
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
S+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 17/215 (7%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
AL ++ ++ G I+G G+GKS+++N + G++ + +I N +L
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY- 80
Query: 1268 RFAVVP--QSPF-LFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVE----AVGLETF 1319
+ +V Q+P L E ++ +NL +N + + S+ K + +E E A + F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 1320 VKESGI------SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSE 1372
+K S + S GQ +L+ + RAL+ + K++ +DE A V A I + + +
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1373 CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406
KG+T + I HR+ VLN +D + ++ +G ++ +G
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
S+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 27 SISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 16/217 (7%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-R 1266
A+ I+ + G V ++G GAGK++ L+A+ L G+I+ +G +I N P + R
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 1267 GRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-----GLETFV 1320
A+VP+ +F E ++ +NL N +K +K ++E + L+ +
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAYNRK-------DKEGIKRDLEWIFSLFPRLKERL 133
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVI 1379
K+ G + S G++Q + + RAL K+L DE + + S + I +G T++
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1380 TIAHRISTVLNMDEI-LILDHGHLVEQGNPQTLLQDE 1415
+ L + +L+ G +V +G LL +E
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 632 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
L +P+G +V +IG G+GK++ L++I G + G I +G
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV---PWILSGTIRD 690
L KG ++AV+G+ G GKS+LL+ +LG G I SI +VPQ P+ S + D
Sbjct: 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYS--VLD 85
Query: 691 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG-VNLSGGQXXXXXXXXXVY 749
+L G++ ++++ K+ V + + ++ ++ ++ +LSGGQ +
Sbjct: 86 IVLMGRSTHINTFAKP-KSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA 144
Query: 750 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDK 808
+ +LD+ SA+D +LS I T + TH Q ++ A+ ++++K
Sbjct: 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
Query: 809 GQVKW 813
K+
Sbjct: 205 QNFKF 209
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 1210 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1269
+NF + G + ++G+ G GKS++L+ L + G+I ++
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSI 68
Query: 1270 AVVPQ---SPFLFEGSLRDNLDPFHMNDDLKIWSVLE-KCH----VKEEVEAVGLETFVK 1321
VPQ SPF + LD M I + + K H + ++ + L K
Sbjct: 69 GFVPQFFSSPFAYSV-----LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK 123
Query: 1322 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVI 1379
S S GQRQLI +ARA+ K++ LDE T+ +D I+ + + ++ + MTV+
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 1380 TIAHRISTVL 1389
H+ + V+
Sbjct: 184 FTTHQPNQVV 193
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 39/236 (16%)
Query: 1192 IEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1249
I+ +NVT YK + AL ++N I+ G V I G +G+GKS+ LN + L G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1250 ILVDGLNI-------INTPVRDLRG----RFAVVP--------QSPFLFE--GSLRDNLD 1288
+ +D + + RD G +F ++P + P +F+ G+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA------ 115
Query: 1289 PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1348
+ + + LE C E+E E F S GQ+Q + +ARAL + ++
Sbjct: 116 ---XSGEERRKRALE-CLKXAELE----ERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 1349 CLDECTANVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHGHL 1402
DE T +D++T + + +E G TV+ + H I+ + I+ L G +
Sbjct: 168 LADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1267
AL ++ ++ G I+G G+GKS+++N + G++ + +I N +L
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY- 80
Query: 1268 RFAVVP--QSPF-LFEGSLRDNL---------DPFHMNDDLKIWSVLEKCHVKEE---VE 1312
+ +V Q+P L E ++ +NL P + + K W E+ V++ +E
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLN-SLFYKKWIPKEEEMVEKAFKILE 139
Query: 1313 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISS 1371
+ L S GQ +L+ + RAL+ + K++ +DE A V A I + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 1372 ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1406
+ KG+T + I HR+ VLN +D + ++ +G ++ +G
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 669
S+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 1208 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVR 1263
A I+ I + IVG + +GKS+I+ A+ + P I G++L G +++
Sbjct: 23 AADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREE 82
Query: 1264 DLRG----RFAVVPQSPFLFEGSLRDNLDPF-HMNDDLKI----WS---VLEKCHVKEEV 1311
+LR A+VPQ+ + SL + H D ++ WS ++EK K +
Sbjct: 83 ELRKIRWKEIALVPQA---AQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRM 139
Query: 1312 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQ-NAI 1369
+ E + + S G +Q + +A ALL VL LDE T+ +D T A I+Q
Sbjct: 140 VRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKE 199
Query: 1370 SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1404
+ +T+I + H I+ + D++ ++ G+LVE
Sbjct: 200 LKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 10/209 (4%)
Query: 1224 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-S 1282
++G TGAGKS L + + G++ ++G +I TP+ R VPQ LF S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIGFVPQDYALFPHLS 86
Query: 1283 LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1342
+ N+ + + + ++ + E++ G+ + S G+RQ + LARAL+
Sbjct: 87 VYRNI-AYGLRNVERVERDRRVREMAEKL---GIAHLLDRKPARLSGGERQRVALARALV 142
Query: 1343 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHR-ISTVLNMDEILILDH 1399
++L LDE + VD +T +L + + + ++ + H I + DE+ ++ +
Sbjct: 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN 202
Query: 1400 GHLVEQGNPQTLLQDECSVFSSFVRASTM 1428
G +VE+G + L + + F+ A +
Sbjct: 203 GRIVEKGKLKELFSAKNGEVAEFLSARNL 231
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Query: 1199 MRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII 1258
+ Y A ++D++ I G V I+G GAGKS++L L G+ + G N+
Sbjct: 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76
Query: 1259 NTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1313
+ + L AV+ Q PF ++ P+ + D + L++ + + A
Sbjct: 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQ---ALQQVMAQTDCLA 133
Query: 1314 VGLETFVKESGISFSVGQRQLICLARALLK------SSKVLCLDECTANVD----AQTAS 1363
+ + SG G++Q + LAR L + + + L LDE T+ +D T
Sbjct: 134 LAQRDYRVLSG-----GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR 188
Query: 1364 ILQNAISSECKGMTVITIAHRIS-TVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
+L+ E + V + H ++ L D I++L G LV G P+ +L E
Sbjct: 189 LLRQLTRQE--PLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAE 239
Score = 37.7 bits (86), Expect = 0.048, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
SL + G +VA+IG G+GKS+LL + G + +HG H G
Sbjct: 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 14/193 (7%)
Query: 1191 LIEFQNV--TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1248
+I+ +NV T+ K +L +IN + G +V I+G G+GK+++L A+ L P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLLPY-SG 58
Query: 1249 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1308
I ++G+ VR +R P +E + N D ++ ++LK L++
Sbjct: 59 NIFINGME-----VRKIRNYIRYSTNLPEAYEIGVTVN-DIVYLYEELK---GLDRDLFL 109
Query: 1309 EEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1367
E ++A+ L E ++ S GQ L+ + AL +++ LDE NVDA ++
Sbjct: 110 EMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR 169
Query: 1368 AISSECKGMTVIT 1380
I K ++T
Sbjct: 170 YIKEYGKEGILVT 182
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 28/175 (16%)
Query: 637 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------IAYVPQVP--WILSG 686
G V ++G GSGK++LL +I G ++ G+I +G I Y +P + +
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGV 88
Query: 687 TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXX 743
T+ D + K D + E LKA L +I + K LS GQ
Sbjct: 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI----------LRRKLYKLSAGQSVLVR 138
Query: 744 XXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 798
+ +I LD+ VDA R ++S I K IL TH + ++
Sbjct: 139 TSLALASQPEIVGLDEPFENVDA-ARRHVISRYI---KEYGKEGILVTHELDMLN 189
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY-----VPQVPWILS 685
SL L G ++ +IG G GK++LL + G G I SG + +P L
Sbjct: 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83
Query: 686 GTIRDNILF---------------GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 730
+++ +LF GK Q ++ L + G G
Sbjct: 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR--------IEAMLELTGISELAGRY 135
Query: 731 GVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 790
LSGGQ + ++ +LD+ SA+D Q+ R I + I K+ +
Sbjct: 136 PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV 195
Query: 791 THN-VQAISAADMVVVMDKGQVKWIGS-------SADLAVSLYSG 827
+H+ +A+ AD + VM +G++ S ADL +L+ G
Sbjct: 196 SHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIG 240
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII----NTPVRD 1264
L+DI+ +++ G + I+G +G GK+++L L G+I + G I N PVR+
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 1265 LRGRFAVVPQSPFLFEGSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1320
R + V EG L +L + + + K + E+ ++ +E G+
Sbjct: 80 RRLGYLVQ-------EGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELA 132
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ-TASILQNAISS-ECKGMTV 1378
S GQ+Q LARAL +++ LDE + +D Q I ++ I++ G +
Sbjct: 133 GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSA 192
Query: 1379 ITIAH-RISTVLNMDEILILDHGHLVEQGNPQTL 1411
+ ++H R + D I ++ G +++ +P L
Sbjct: 193 VFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 1322 ESGISFSVGQRQLICLARALLKSSK---VLCLDECTANVDAQTASILQNAISSECK-GMT 1377
+ S G+ Q I LA L +S + V LDE T + LQ + G T
Sbjct: 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNT 785
Query: 1378 VITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426
VI + H++ V D +L + D G LV QG P + Q SV + ++RA+
Sbjct: 786 VIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLRAA 840
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 14/184 (7%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1265
L I+ +++ G V I+G +G+GKS++L L L G++ ++G + T ++ L
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 1266 RGR-FAVVPQSPFLFE--GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE--VEAVGLETFV 1320
R R V Q +L +L + + P LK+ ++ + E + +GL +
Sbjct: 80 RNRKLGFVFQFHYLIPELTALENVIVPM-----LKMGKPKKEAKERGEYLLSELGLGDKL 134
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECKGMTVI 1379
S G++Q + +ARAL +L DE T N+D A T ++ + G +++
Sbjct: 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
Query: 1380 TIAH 1383
+ H
Sbjct: 195 MVTH 198
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSILG 659
SL + KG V++IG GSGKS+LL ILG
Sbjct: 24 SLSVKKGEFVSIIGASGSGKSTLL-YILG 51
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 18/221 (8%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIIN-TPVRD 1264
L +N + G ++G GAGKS+ L + P + G+IL+DG NI+ +P
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKST-LGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 1265 LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL-------KIWSVLEKCHVKEEVEAVGLE 1317
R + Q P G N + L + W+ ++K + + L
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 1318 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ---NAISSECK 1374
++ E FS G+++ + + L+ LDE + +D ++ NA+
Sbjct: 138 RYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNF 194
Query: 1375 GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415
G VIT RI + D++ ++ G +V G P+ L+ E
Sbjct: 195 GALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELE 235
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 32/183 (17%)
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ-VPWILSGTIRD---NIL 693
++ ++GE G+GK++L+ + G + G +++ PQ + GT+R +
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKI 438
Query: 694 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQXXXXXXXXXVYHGSD 753
G+ +PQ ++ +K +D DI I ++ +LSGG+ + +D
Sbjct: 439 RGQFLNPQFQTDVVKPLRID-DI----------IDQEVQHLSGGELQRVAIVLALGIPAD 487
Query: 754 IYMLDDVLSAVDAQ--------VARWILSNAIMGPHMLQKTRILCTHN-VQAISAADMVV 804
IY++D+ + +D++ + R+IL N +KT + H+ + A AD V+
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHN--------KKTAFIVEHDFIMATYLADKVI 539
Query: 805 VMD 807
V +
Sbjct: 540 VFE 542
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 21/223 (9%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1268
L I++ I G + + G GAGK+++LN L P G + N+ +
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV-----NLFGKXPGKVGYS 91
Query: 1269 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV------EAVGLETFVKE 1322
V Q SL + D+ I + V +++ EA L V
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGX 151
Query: 1323 SGIS------FSVGQRQLICLARALLKSSKVLCLDECTANVD---AQTASILQNAISSEC 1373
S + S G++Q + +ARAL +VL LDE A +D ++ + +++S
Sbjct: 152 SAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 1374 KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1415
+ I + H I + N +IL+L G ++QG + +L E
Sbjct: 212 PTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSE 254
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 48/215 (22%)
Query: 1230 AGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP 1289
+GKS+ L + L G I+V+G NI VRD G+ V ++ LR L
Sbjct: 43 SGKSTFLRCINFLEKPSEGAIIVNGQNI--NLVRDKDGQLKVADKNQLRL---LRTRLTM 97
Query: 1290 F--HMNDDLKIWS---VLEKCHVKEEVEAVGLE---------TFVKESGIS--------- 1326
H N +WS VLE ++ ++ +GL ++ + GI
Sbjct: 98 VFQHFN----LWSHMTVLENV-MEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV 152
Query: 1327 -FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVIT- 1380
S GQ+Q + +ARAL VL DE T+ +D + I+Q ++ E K M V+T
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ-LAEEGKTMVVVTH 211
Query: 1381 ---IAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1412
A +S+ ++ L G + E+G+P+ +
Sbjct: 212 EMGFARHVSS-----HVIFLHQGKIEEEGDPEQVF 241
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 27/202 (13%)
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALF-RLTP-ICGGQILVDGLNIINTPVRDLRGRFAVVP 1273
++ G VGIVG G GKS+ + L +L P +CG DG+ +R RG
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV------IRAFRGNEL--- 94
Query: 1274 QSPF--LFEGSLRDNLDPFHMNDDL-------KIWSVLEKC----HVKEEVEAVGLETFV 1320
Q+ F L G +R + P ++ DL K+ +L+K ++E V+A+ LE +
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL 152
Query: 1321 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVI 1379
+ S G+ Q + +A ALL+++ DE ++ +D + AI +G +V+
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 1380 TIAHRISTVLNMDEILILDHGH 1401
+ H ++ + + +I+ + +G
Sbjct: 213 VVEHDLAVLDYLSDIIHVVYGE 234
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 104/236 (44%), Gaps = 24/236 (10%)
Query: 634 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ-VPWILSGTIRDNI 692
+ KG ++ ++G G GK++ + + G T G I ++AY PQ + GT+
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV---- 364
Query: 693 LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQXXXXXXXXXVYHG 751
Y+ S + K + L+ + + ++ VN LSGG+ +
Sbjct: 365 -----YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRD 419
Query: 752 SDIYMLDDVLSAVDAQVARWILSNAIMGPHML---QKTRILCTHNVQAIS-AADMVVVMD 807
+DIY+LD+ + +D + R +S AI H+ +KT ++ H+V I +D + V +
Sbjct: 420 ADIYLLDEPSAYLDVE-QRLAVSRAIR--HLXEKNEKTALVVEHDVLXIDYVSDRLXVFE 476
Query: 808 KGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQEMRTNASSANKQILLQEKD 862
K+ A+ N F S+ + +++ T ANK+ +++++
Sbjct: 477 GEPGKY-----GRALPPXGXREGXNRFLASIGITFRRDPDTGRPRANKEGSVKDRE 527
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 20/172 (11%)
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1275
I+ G +GIVG G GK++ + L + G+I D L + P ++
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD-LTVAYKP------QYIKADYE 361
Query: 1276 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1335
++E L +D +N + +L+ + ++ + +E S G+ Q +
Sbjct: 362 GTVYE--LLSKIDASKLNSNFYKTELLKPLGI--------IDLYDREVN-ELSGGELQRV 410
Query: 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHRI 1385
+A LL+ + + LDE +A +D + + AI E T + + H +
Sbjct: 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV 462
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 694 SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 737
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1383
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C G+T ITI+H
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-C-GITSITISH 597
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1247
+ +++ N +Y + + DINF +++ ++G GAGKS+++N L L P G
Sbjct: 663 KAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 722
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 1326 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1383
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C G+T ITI+H
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-C-GITSITISH 603
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1247
+ +++ N +Y + + DINF +++ ++G GAGKS+++N L L P G
Sbjct: 669 KAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ-VPWILSGTIRDNILF 694
KG ++ ++G G GK++ + + G T G + ++AY PQ + GT+
Sbjct: 367 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV------ 420
Query: 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQXXXXXXXXXVYHGSD 753
Y+ S ++ K + L+ + + ++ V +LSGG+ + +D
Sbjct: 421 ---YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 477
Query: 754 IYMLDDVLSAVDAQVARWILSNAIMGPHML---QKTRILCTHNVQAIS-AADMVVVMD 807
IY+LD+ + +D + R +S AI H++ +KT ++ H+V I +D ++V +
Sbjct: 478 IYLLDEPSAYLDVE-QRLAVSRAIR--HLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 532
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 98/250 (39%), Gaps = 40/250 (16%)
Query: 1160 VSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGG 1219
+ ++ E +DV +E L Y L D+ + + +P I G
Sbjct: 327 IRFTKLSERVDVERETLVEYPRLVKDY--------GSFKLEVEPG----------EIRKG 368
Query: 1220 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS-PFL 1278
+GIVG G GK++ + L + G++ D L + A PQ
Sbjct: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTV------------AYKPQYIKAE 415
Query: 1279 FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338
+EG++ + L D K+ S K + ++ +G+ + S G+ Q + +A
Sbjct: 416 YEGTVYELLSKI---DSSKLNSNFYKTEL---LKPLGIIDLYDRNVEDLSGGELQRVAIA 469
Query: 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNMDEILI 1396
LL+ + + LDE +A +D + + AI E T + + H + + + + LI
Sbjct: 470 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
Query: 1397 LDHGHLVEQG 1406
+ G G
Sbjct: 530 VFEGEPGRHG 539
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ-VPWILSGTIRDNILF 694
KG ++ ++G G GK++ + + G T G + ++AY PQ + GT+
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV------ 434
Query: 695 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQXXXXXXXXXVYHGSD 753
Y+ S ++ K + L+ + + ++ V +LSGG+ + +D
Sbjct: 435 ---YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 491
Query: 754 IYMLDDVLSAVDAQVARWILSNAIMGPHML---QKTRILCTHNVQAIS-AADMVVVMD 807
IY+LD+ + +D + R +S AI H++ +KT ++ H+V I +D ++V +
Sbjct: 492 IYLLDEPSAYLDVE-QRLAVSRAIR--HLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 40/250 (16%)
Query: 1160 VSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGG 1219
+ ++ E +DV +E L Y L D+ + + +P I G
Sbjct: 341 IRFTKLSERVDVERETLVEYPRLVKDY--------GSFKLEVEPG----------EIRKG 382
Query: 1220 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS-PFL 1278
+GIVG G GK++ + L + G++ D L + A PQ
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTV------------AYKPQYIKAE 429
Query: 1279 FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1338
+EG++ + L D K+ S K E ++ +G+ + S G+ Q + +A
Sbjct: 430 YEGTVYELLSKI---DSSKLNSNFYKT---ELLKPLGIIDLYDRNVEDLSGGELQRVAIA 483
Query: 1339 RALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNMDEILI 1396
LL+ + + LDE +A +D + + AI E T + + H + + + + LI
Sbjct: 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 543
Query: 1397 LDHGHLVEQG 1406
+ G G
Sbjct: 544 VFEGEPGRHG 553
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 638 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 679
S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 78/186 (41%), Gaps = 44/186 (23%)
Query: 1209 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-----PVR 1263
L+ ++ + GI G G GKS+++ A I GQ VDG
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRA------IANGQ--VDGFPTQEECRTVYVEH 502
Query: 1264 DLRGRFAVVPQSPFLFEG------SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1317
D+ G + F+FE +++D L F D++ +
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPIS--------------- 547
Query: 1318 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1377
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C G+T
Sbjct: 548 --------ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-C-GIT 597
Query: 1378 VITIAH 1383
ITI+H
Sbjct: 598 SITISH 603
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 1189 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1247
+ +++ N+ +Y + + DINF +++ ++G GAGKS+++N L L P G
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 44/195 (22%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 1192 IEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1250
+E +++++ Y KP L I TIE G V G G GK+++L + G+I
Sbjct: 11 LEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1251 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1309
+ +G+ P+ ++G+ +P+ + S+ D L +K+ K + +
Sbjct: 67 IYNGV-----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEIMD 117
Query: 1310 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1369
+E+V + K+ G S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 118 ALESVEVLDLKKKLG-ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
Query: 1370 SSECKGMTVITIAHR 1384
K ++ I+ R
Sbjct: 177 LEILKEKGIVIISSR 191
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.6 bits (83), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 34/232 (14%)
Query: 636 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI-AYVPQVPWILSGTIRDNILF 694
+G ++ ++G G GK++ ++GE+ GS+ I +Y PQ +
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF------------ 340
Query: 695 GKNYDP--QSYSETLKACTLDV------DISLMVGGDMAYIGEKGVN-LSGGQXXXXXXX 745
NYD Q Y E L +++ + ++ + E VN LSGG+
Sbjct: 341 -PNYDGTVQQYLENASKDALSTSSWFFEEVTKRL--NLHRLLESNVNDLSGGELQKLYIA 397
Query: 746 XXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA--ADMV 803
+ +D+Y+LD S +D + R+I++ AI +K + +I AD +
Sbjct: 398 ATLAKEADLYVLDQPSSYLDVE-ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI 456
Query: 804 VVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQEMRTNASSANK 854
+V KG+ + G + V+L +G NEF L + +++ T NK
Sbjct: 457 IVF-KGEPEKAGLATS-PVTLKTGM---NEFLRELEVTFRRDAETGRPRVNK 503
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPS 268
W++M+F + + N+ VI ++ + L P D P++ H +L CWQ R+ P
Sbjct: 214 WEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPDC-PTSLHQLMLDCWQKDRNARPRFPQ 272
Query: 269 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLL 301
+V A+ P L V ++ G + PLL
Sbjct: 273 VVSALDKMIRNP---ASLKIVARENGGASHPLL 302
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPS 268
W++M+F + + N+ VI ++ + L P D P++ H +L CWQ R+ P
Sbjct: 212 WEVMSFGERPYWDMSNQDVINAIEQDYRLPPPPDC-PTSLHQLMLDCWQKDRNARPRFPQ 270
Query: 269 LVRAI 273
+V A+
Sbjct: 271 VVSAL 275
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 1314 VGLETFVK--ESGISFSVGQRQLICLARALLK---SSKVLCLDECTANVDAQTASILQNA 1368
VGL +VK + + S G+ Q I LA L K + LDE T + + L
Sbjct: 792 VGL-GYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEV 850
Query: 1369 ISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTLLQDECSVFSS 1421
+ +G TVI I H + + N D I+ L + G++V G P+ + ++ S
Sbjct: 851 LHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGR 910
Query: 1422 FVR 1424
F++
Sbjct: 911 FLK 913
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 204 SGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRS 261
S + YWD+ N+ VIK + E+ LP MD P+ H +L CWQ +R+
Sbjct: 243 SYGERPYWDMS---------NQDVIKAI--EEGYRLPAPMDCPAGLHQLMLDCWQKERA 290
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV---------PQVP----WILSG 686
VAV GE GSGKSS +N++ G G+ A + V P +P W L G
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGA--AKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLD 713
+ N+ P +Y E +K D
Sbjct: 130 ------IGSTNFPPDTYLEKMKFYEYD 150
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV---------PQVP----WILSG 686
VAV GE GSGKSS +N++ G G+ A + V P +P W L G
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGA--AKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLD 713
+ N+ P +Y E +K D
Sbjct: 130 ------IGSTNFPPDTYLEKMKFYEYD 150
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV---------PQVP----WILSG 686
VAV GE GSGKSS +N++ G G+ A + V P +P W L G
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGA--AKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLD 713
+ N+ P +Y E +K D
Sbjct: 130 ------IGSTNFPPDTYLEKMKFYEYD 150
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV---------PQVP----WILSG 686
VAV GE GSGKSS +N++ G G+ A + V P +P W L G
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGA--AKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129
Query: 687 TIRDNILFGKNYDPQSYSETLKACTLD 713
+ N+ P +Y E +K D
Sbjct: 130 ------IGSTNFPPDTYLEKMKFYEYD 150
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 204 SGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRS 261
S + YWD+ N+ VIK + E+ LP MD P H +L CWQ +RS
Sbjct: 229 SYGERPYWDMS---------NQDVIKAI--EEGYRLPPPMDCPIALHQLMLDCWQKERS 276
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 204 SGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRS 261
S + YWD+ N+ VIK + E+ LP MD P H +L CWQ +RS
Sbjct: 208 SYGERPYWDMS---------NQDVIKAI--EEGYRLPPPMDCPIALHQLMLDCWQKERS 255
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 204 SGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRS 261
S + YWD+ N+ VIK + E+ LP MD P H +L CWQ +RS
Sbjct: 214 SYGERPYWDMS---------NQDVIKAI--EEGYRLPPPMDCPIALHQLMLDCWQKERS 261
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSIL 658
S+ +P G+ VAV G GSGKS+L+N +L
Sbjct: 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSIL 658
S+ +P G+ VAV G GSGKS+L+N +L
Sbjct: 644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 631 SLCLPKGSLVAVIGEVGSGKSSLLNSIL 658
S+ +P G+ VAV G GSGKS+L+N +L
Sbjct: 644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRS 261
W++M + + + N V+K ++ D LPT MD PS + ++ CWQ +R+
Sbjct: 241 WEVMTYGERPYWELSNHEVMKAIN--DGFRLPTPMDCPSAIYQLMMQCWQQERA 292
>pdb|1CKX|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator:
Solution Structures Of Peptides Based On The Phe508
Region, The Most Common Site Of Disease-Causing
Delta-F508 Mutation
pdb|1CKY|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator:
Solution Structures Of Peptides Based On The Phe508
Region, The Most Common Site Of Disease-Causing
Delta-F508 Mutation
Length = 26
Score = 32.0 bits (71), Expect = 2.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 684 LSGTIRDNILFGKNYDPQSYSETLKA 709
+ GTI++NI+FG +YD Y +KA
Sbjct: 1 MPGTIKENIIFGVSYDEYRYRSVIKA 26
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Query: 204 SGNNQSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRS 261
S + YWD+ N+ VI + E LP MD PS H +L CWQ R+
Sbjct: 235 SYGERPYWDMT---------NQDVINAI--EQDYRLPPPMDCPSALHQLMLDCWQKDRN 282
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGS 667
+AV+G SGKSS+L SI+G+ L GS
Sbjct: 37 IAVVGGQSSGKSSVLESIVGKDFLPRGS 64
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 208 QSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRS 261
+ YWD+ N+ VI + E LP MD PS H +L CWQ R+
Sbjct: 213 RPYWDMT---------NQDVINAI--EQDYRLPPPMDCPSALHQLMLDCWQKDRN 256
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis
Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis
Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 31.6 bits (70), Expect = 3.8, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 1221 QVGIVGRTGAGKSSILNALF 1240
+V VGR+ GKSS+LNALF
Sbjct: 25 EVAFVGRSNVGKSSLLNALF 44
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 239 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 296
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 297 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 329
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 1216 IEGGTQVGIVGRTGAGKSSILNALFR-----LTPICG-------GQILVDGLNIINTPVR 1263
I +V IVGR GKS++ NA+ ++PI G ++ +DG +
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236
Query: 1264 DLRGRFAVVPQS 1275
LR + V P++
Sbjct: 237 GLRRKSRVEPRT 248
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 212 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 269
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 270 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 302
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 212 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 269
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 270 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 302
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 229 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 286
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 287 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 319
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 211 WDLMAF--KSIDSVMNRGVIKQLDFEDLLGLPTDMD-PSTCHSKLLSCWQAQRSCNCTNP 267
W++M++ + + N+ VIK +D + LP MD P+ + +L CWQ R+
Sbjct: 241 WEVMSYGERPYWEMSNQDVIKAVD--EGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFE 298
Query: 268 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNK 304
+V + P G LK++ + LLL++
Sbjct: 299 QIVSILDKLIRNP----GSLKIITSAAARPSNLLLDQ 331
>pdb|2WZF|A Chain A, Legionella Pneumophila Glucosyltransferase Crystal
Structure
Length = 525
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 540 ALFNSLISPLNSFPWVINGLIDAFIS--IRRLTRFLGCSEYKHELEQAANSPSYISNGLS 597
A FN S + GL DAF S + +L FLG ++K + YI+ +S
Sbjct: 336 AFFNKCQEERKSIFDLRKGLQDAFRSDSLLQLYDFLGADKFKEVFKLKEAQSKYINEHIS 395
Query: 598 NFNSKDM 604
F+ KD+
Sbjct: 396 EFSEKDL 402
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
V V+G+ G GKSS +NS++GE ++ A G
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
V V+G+ G GKSS +NS++GE ++ A G
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
V V+G+ G GKSS +NS++GE ++ A G
Sbjct: 38 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 70
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 640 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 672
V V+G+ G GKSS +NS++GE ++ A G
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,865,469
Number of Sequences: 62578
Number of extensions: 1457187
Number of successful extensions: 4621
Number of sequences better than 100.0: 157
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 4194
Number of HSP's gapped (non-prelim): 328
length of query: 1428
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1317
effective length of database: 8,027,179
effective search space: 10571794743
effective search space used: 10571794743
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)