Query 000553
Match_columns 1428
No_of_seqs 436 out of 5484
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 18:46:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000553.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_323-327//hhsearch_pdb/000553hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 1608.0 104.6 1187 223-1427 2-1317(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 1277.8 97.9 1127 278-1427 47-1271(1284)
3 4f4c_A Multidrug resistance pr 1.0 1 1 740.9 57.3 486 940-1426 137-653 (1321)
4 3g5u_A MCG1178, multidrug resi 1.0 1 1 711.7 49.4 487 939-1426 108-625 (1284)
5 3qf4_B Uncharacterized ABC tra 1.0 1 1 673.6 51.1 534 888-1426 27-590 (598)
6 3qf4_A ABC transporter, ATP-bi 1.0 1 1 672.8 54.9 542 882-1426 7-578 (587)
7 4a82_A Cystic fibrosis transme 1.0 1 1 652.9 51.9 481 945-1427 67-577 (578)
8 3b60_A Lipid A export ATP-bind 1.0 1 1 650.8 61.9 533 888-1426 15-579 (582)
9 3b5x_A Lipid A export ATP-bind 1.0 1 1 647.8 65.6 533 888-1426 15-579 (582)
10 2yl4_A ATP-binding cassette SU 1.0 1 1 640.2 60.1 536 889-1426 10-583 (595)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=1607.97 Aligned_cols=1187 Identities=18% Similarity=0.213 Sum_probs=899.8
Q ss_pred HHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-------------CCCCCCHHHHHHHH-HHHHHHHHHHH
Q ss_conf 980024-9888789989999999158999999999983210-------------89984069999999-75979999999
Q 000553 223 MNRGVI-KQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSC-------------NCTNPSLVRAICCA-YGYPYICLGLL 287 (1428)
Q Consensus 223 ~~~g~~-~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-------------~~~~~~l~~~l~~~-~~~~~~~~~l~ 287 (1428)
++.|.+ ++|+..|.+.+.|++..+...+.+++.|.....+ ..++.++ +.+|+- -++..++..+-
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~Lfrya~~~d~~l~~~g 80 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVSI-PQLYRYTTTLEKLLLFIG 80 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCCH-HHHTTTCCHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCH-HHHHHCCCHHHHHHHHHH
T ss_conf 8773100687635445679501110000113454243554334310012232025687799-997315676789999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHCC--------C-------CC-CH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999---99999998425--------8-------87-34-----699999999999999999999999999
Q 000553 288 KVVNDSIGFAGPL---LLNKLIKFLQQ--------G-------SG-HL-----DGYVLAIALGLTSILKSFFDTQYSFHL 343 (1428)
Q Consensus 288 ~l~~~~~~~~~P~---ll~~li~~l~~--------~-------~~-~~-----~g~~l~~~l~l~~~~~~~~~~~~~~~~ 343 (1428)
.++..+...+.|+ ++.++++.+.+ . .. .. .-..++..++...++..++...+.+..
T Consensus 81 ~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 160 (1321)
T 4f4c_A 81 TLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCY 160 (1321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999997010001454300034431001689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999982599432478985599999996599999999-99999987999999999999988679999
Q 000553 344 SKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAFV 422 (1428)
Q Consensus 344 ~r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~-~~~~~lw~~pl~i~i~~~lL~~~lG~a~l 422 (1428)
...+.++-..+...+|+|.++++..-..+.++|+++|.|++|++++.+++ ..+..++..++.++.++.+++..-..-++
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l 240 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999997889899879984899999999999999999999999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999966999998080899999999999999999999999999
Q 000553 423 SGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 502 (1428)
Q Consensus 423 ~g~~v~i~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~se~L~~Ik~IK~~gwE~~~~~~I~~~R~~El~~~~~~~~l~~ 502 (1428)
+.++++.+..++..++++++.+.+++.++..+++.+.++|+++|||+||+|+||+.+.++..+..++..+...+......
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLG 320 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999983999998214299999999999999999999999999
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 999999999899--999999999881998768589999999999999999999999999999999999999619998852
Q 000553 503 WCVFFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH 580 (1428)
Q Consensus 503 ~~~~~~~~~p~~--~~~~tf~~y~~~~~~L~~~~~Ft~lal~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e~~~ 580 (1428)
...........+ +.++.++.+.+.++.++++.+|+.+.++..+..|+..++..++.+.++.+|++||.+||+.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 400 (1321)
T 4f4c_A 321 ISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999999599869999999999999999999899999999999999999999971785345
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 44310299985457876678898549997117860578853335540100147419979999968998378999998737
Q 000553 581 ELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 660 (1428)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStLL~alLGe 660 (1428)
........+ .+....|+++|++|+|++..+.|. |+|+||++++|+.++||||+|||||||+++|+|+
T Consensus 401 ~~~~~~~~~----------~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 401 SSSKAGRKD----------MKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CSSSCCCCC----------CCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCCCCCCCC----------CCCCCCEEEEEEEEECCCCCCCCE---EECEEEEECCCCEEEEEECCCCCHHHHHHHHCCC
T ss_conf 666556567----------788876799985540799998743---3331886228827899805898577888875456
Q ss_pred CCCCCEEEEECC-------------CEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCCCCCCCCC
Q ss_conf 567870899809-------------1999838987884018999704999-99688999999823128884045997530
Q 000553 661 MMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAY 726 (1428)
Q Consensus 661 ~~~~~G~v~~~g-------------~iayv~Q~pWl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Di~~lp~GD~T~ 726 (1428)
+++.+|+|.++| +||||+|+|||+|+||||||+||.+ .+++++.++++.|++++|++.||+||+|+
T Consensus 468 ~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~ 547 (1321)
T 4f4c_A 468 YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTL 547 (1321)
T ss_dssp SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSE
T ss_pred CCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCE
T ss_conf 51644861579965011259998504666587533207861678864155220999999998756546887088888607
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCEEEEE
Q ss_conf 26897766508999999999881399988871784201099999999984218566896499982683102008989999
Q 000553 727 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 806 (1428)
Q Consensus 727 iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Iivl 806 (1428)
|||+|.+||||||||||||||+|++|+|++||||+||||+++++ ++++|+.+ ++++||+|++||+++.++.||+|++|
T Consensus 548 vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~-~i~~~l~~-~~~~~T~iiiaHrls~i~~aD~Iivl 625 (1321)
T 4f4c_A 548 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEG-IVQQALDK-AAKGRTTIIIAHRLSTIRNADLIISC 625 (1321)
T ss_dssp ESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHH-HHHHHHHH-HHTTSEEEEECSCTTTTTTCSEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH-HHHHHHHH-HHCCCEEEEECCCHHHHHHCCEEEEE
T ss_conf 55898877777879999999872599989984554468878999-99999999-84798899973638789868989996
Q ss_pred ECCEEEEECCHHHHHHCCCCCCCCCCCCCHHHHHHH--H--HHCCCC-C-----C-------HHHHHHH-----------
Q ss_conf 397699932967887400367655543210123221--1--100124-5-----0-------2344421-----------
Q 000553 807 DKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQK--Q--EMRTNA-S-----S-------ANKQILL----------- 858 (1428)
Q Consensus 807 ~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~-~-----~-------~~~~~~~----------- 858 (1428)
++|+|+++|+|+||++.++.+.++..........+. + ...... . . ...+...
T Consensus 626 ~~G~ive~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1321)
T 4f4c_A 626 KNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSI 705 (1321)
T ss_dssp ETTEEEEEECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC----------------------------------------
T ss_pred ECCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 39965136899999985327999999622122223323344332232111222223422222221102211101321245
Q ss_pred -----HCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf -----002346777304677899878417501788999885245-89999999999999999842344444321134887
Q 000553 859 -----QEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSS 932 (1428)
Q Consensus 859 -----~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~ 932 (1428)
.+++.............++.++.+...+..|+.|....+ |....+.++..++.........+|+..|.+.....
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 785 (1321)
T 4f4c_A 706 TNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGN 785 (1321)
T ss_dssp ----------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 67740257775315403899999999707863109999999877899999999999999999999999999999875179
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHHCCHHH
Q ss_conf --877650156889999989999999999999999999999999999985110787333246--7723699998338134
Q 000553 933 --QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQ--TPGGRILNRFSSDLYM 1008 (1428)
Q Consensus 933 --~~~~~~~~~l~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~--~~~G~ilnRfs~D~~~ 1008 (1428)
.......+|..+|++++++..++.++..+++.+.+.+.+.++|.+++++++++|++|||. +|+|+++|||++|++.
T Consensus 786 ~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~ 865 (1321)
T 4f4c_A 786 PADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPN 865 (1321)
T ss_dssp SSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHH
T ss_conf 34556678999999999999999999999999999999999999999988873499333216788848888502505999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCH
Q ss_conf 42004699999999999998876448878799999999999999999999999999999999862062477899862033
Q 000553 1009 IDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGS 1088 (1428)
Q Consensus 1009 id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl 1088 (1428)
+|..++..+..++..++.+++.++++.+..|++.+++++++.++++...++.+..+.......++.++...++.|+++|+
T Consensus 866 i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi 945 (1321)
T 4f4c_A 866 LRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENV 945 (1321)
T ss_dssp HHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999865377770221378689999999988899999999999999999999999888988999999627
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH----------------HHHHHHHH
Q ss_conf 999851819999999999999999999999999999999999------------99----------------99999999
Q 000553 1089 STIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQ------------VG----------------LALSYAAP 1140 (1428)
Q Consensus 1089 ~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~------------~g----------------lal~~~~~ 1140 (1428)
.|||+|++|+.+.+++.+.++..++..+.....+.+...... +| +++.+++.
T Consensus 946 ~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~ 1025 (1321)
T 4f4c_A 946 RTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAIT 1025 (1321)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 98886141488999999999999999999999999999999999999999999875788753765421478999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC-CCCCEEEEEEEEC
Q ss_conf -99999999999999999977999998630487100026789999999986199999999977999-9520222599757
Q 000553 1141 -IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEG 1218 (1428)
Q Consensus 1141 -~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~isl~I~~ 1218 (1428)
....++.+...+.+++..+.+++|+.++.+.++|.... ..+++.||..|.|+|+||+|+|+++. .+||+|+||+|+|
T Consensus 1026 ~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1026 ISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSL-SLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEP 1104 (1321)
T ss_dssp TTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTT-CCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECC
T ss_conf 778899999999999999999999899986076657776-6778788888818999879857999988212451699889
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCC---CCCCH
Q ss_conf 959999879999489999998347989984699999617999937672350898077655677578832869---99993
Q 000553 1219 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDD 1295 (1428)
Q Consensus 1219 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~---~~~sd 1295 (1428)
||+||||||||||||||+++|+|+|+|++|+|.|||+||+++++++||+++++|||||+||+||||+||..+ ..++|
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCH
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHHHHCCCCCCCCCH
T ss_conf 89999989999819999999956863899789999998654999999854599878997327239999745499999999
Q ss_pred HHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7899999980299999968--99315305999999249999999998726997899846566989997999999999836
Q 000553 1296 LKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1373 (1428)
Q Consensus 1296 ~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f 1373 (1428)
+|+|+|+++++++++|+++ ||||.++|+|.+||||||||+|||||+||+|+|||||||||+||.+||+.||++|++.+
T Consensus 1185 ~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHCCHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999829849997176789998238891569999999999999971799899968111578999999999999973
Q ss_pred CCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHC
Q ss_conf 994799861580366400979999498597866945885039938999998507
Q 000553 1374 KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1374 ~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~g 1427 (1428)
++||+|+||||++||++||||+|||+|+|+|+|+|+||+++ +|.|++||+.+.
T Consensus 1265 ~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1265 EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C-----------
T ss_pred CCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHHHH
T ss_conf 99989996068999996999999989899998888999849-809999999998
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=1277.84 Aligned_cols=1127 Identities=18% Similarity=0.217 Sum_probs=816.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C-------CC-----------C-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5979999999999999999999999999998425-8-------87-----------3-4699999999999999999999
Q 000553 278 GYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-G-------SG-----------H-LDGYVLAIALGLTSILKSFFDT 337 (1428)
Q Consensus 278 ~~~~~~~~l~~l~~~~~~~~~P~ll~~li~~l~~-~-------~~-----------~-~~g~~l~~~l~l~~~~~~~~~~ 337 (1428)
++.++...+..++..++....|+++..+++.+.. . .. . .....++..++.+.++..++.-
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1284)
T 3g5u_A 47 RLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAY 126 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998613444332222221111100244688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999998259943247898559999999659999999999-999987999999999999988
Q 000553 338 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQ 416 (1428)
Q Consensus 338 ~~~~~~~r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~~~-~~~lw~~pl~i~i~~~lL~~~ 416 (1428)
...+...+.+.++-..+...+|+|.++++.....+.++|+++|.++.|++.+.+.... +..+....+.++.++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~- 205 (1284)
T 3g5u_A 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFT- 205 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9999999999999999999999999869989975688778999999889999999999999999999999999999999-
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 679-9999999999999999999999999999999999999999999996699999808089999999999999999999
Q 000553 417 VKF-AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLS 495 (1428)
Q Consensus 417 lG~-a~l~g~~v~i~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~se~L~~Ik~IK~~gwE~~~~~~I~~~R~~El~~~~ 495 (1428)
+.| .+++.++++.++..+..++.+.+.+..++..+..++..+...|.++||++||.|++|+.+.++..+.-++-.+...
T Consensus 206 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~ 285 (1284)
T 3g5u_A 206 RGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI 285 (1284)
T ss_dssp TTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999999999999999999999999999999997879999846539999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998--9999999999988199876858999999999999999999999999999999999999961
Q 000553 496 TRKYLDAWCVFFWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 573 (1428)
Q Consensus 496 ~~~~l~~~~~~~~~~~p--~~~~~~tf~~y~~~~~~L~~~~~Ft~lal~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL 573 (1428)
+..........+..... ..+..+.++.+.+..+.++++.+++.+..+.....|+..+...+..+.++.++.+|+.+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 365 (1284)
T 3g5u_A 286 KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII 365 (1284)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999929988999999999999999999999999999999999999999997
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCHHHH
Q ss_conf 99988524431029998545787667889854999711786057885333554010014741997999996899837899
Q 000553 574 GCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSL 653 (1428)
Q Consensus 574 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~L~~inl~i~~G~l~~IvG~vGsGKStL 653 (1428)
+.++..+........+ ......|+++|++|+|+.+.+.+. |+|+||++++|+.++|+||+|||||||
T Consensus 366 ~~~~~~~~~~~~~~~~----------~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKSTl 432 (1284)
T 3g5u_A 366 DNKPSIDSFSKSGHKP----------DNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKSTT 432 (1284)
T ss_dssp SCCCCCSSCCSSCCCC----------TTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHHHH
T ss_pred CCCCCCCCCCCCCCCC----------CCCCCEEEEEEEEEECCCCCCCCC---EECCEEEECCCCEEEEECCCCCCHHHH
T ss_conf 2898677666567777----------777771899998997699998710---125458975998899989999979999
Q ss_pred HHHHHCCCCCCCEEEEECC-------------CEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHCC
Q ss_conf 9998737567870899809-------------1999838987884018999704999-9968899999982312888404
Q 000553 654 LNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLM 719 (1428)
Q Consensus 654 L~alLGe~~~~~G~v~~~g-------------~iayv~Q~pWl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Di~~l 719 (1428)
+++|+|++++.+|+|.++| .++||+|+||++++||+|||.+|.+ .+.+++.++++.|++.++++.+
T Consensus 433 ~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l 512 (1284)
T 3g5u_A 433 VQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512 (1284)
T ss_dssp HHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHC
T ss_conf 99980788999738999999877579999986548986887537766999974579899999999999982969999746
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHC
Q ss_conf 59975302689776650899999999988139998887178420109999999998421856689649998268310200
Q 000553 720 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 799 (1428)
Q Consensus 720 p~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~lSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~ 799 (1428)
|+|++|.+||+|.+|||||||||+||||+|++|+|++||||+|+||+++++.+.+. +.. +.+++|+|++||+++.+..
T Consensus 513 ~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~-l~~-~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA-LDK-AREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHH-HHH-HHTTSEEEEECSCHHHHTT
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHC
T ss_conf 56334501478786599999999999999529998999798777799999999999-999-7399989999407789974
Q ss_pred CCEEEEEECCEEEEECCHHHHHHCCCCCCCCCCCCCHHHHHH-HHH---HCCC-----CC-CHHHHHHHHCC---CC-CC
Q ss_conf 898999939769993296788740036765554321012322-111---0012-----45-02344421002---34-67
Q 000553 800 ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQE---MRTN-----AS-SANKQILLQEK---DV-VS 865 (1428)
Q Consensus 800 aD~Iivl~~G~i~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~-----~~-~~~~~~~~~~~---~~-~~ 865 (1428)
||+|++|++|+|+++|+++++....+.+.+............ ... .... .. ........... .. ..
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICG 670 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC--------------------------------------------
T ss_pred CCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99899998999999788999986787799999974300221113333332222234433333333200034543334456
Q ss_pred CCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCCCCCCH
Q ss_conf 7730467789987841--7501788999885245899999999999999998423444443----211348878776501
Q 000553 866 VSDDAQEIIEVEQRKE--GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSY----WVDTTGSSQTKYSTS 939 (1428)
Q Consensus 866 ~~~~~~~~~~~e~~~~--g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~----w~~~~~~~~~~~~~~ 939 (1428)
..+.......++..+. ....+..+..|.+.. |..+.+.+++.++.........+++.. |.+............
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 749 (1284)
T 3g5u_A 671 PHDQDRKLSTKEALDEDVPPASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSN 749 (1284)
T ss_dssp -------------CCCCCSCCCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 422332110245553136625899999984515-7999999999999999999999999999999855685033677999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 5688999998999999999999999999999999999998511078733324--67723699998338134420046999
Q 000553 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD--QTPGGRILNRFSSDLYMIDDSLPFIL 1017 (1428)
Q Consensus 940 ~~l~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~--~~~~G~ilnRfs~D~~~id~~l~~~l 1017 (1428)
+|..+|++++++..++.+++.+.+.+.+.+...++|.+++++++++|++||+ .+++|+++||+++|+..++..++..+
T Consensus 750 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l 829 (1284)
T 3g5u_A 750 LFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL 829 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998399888757899889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Q ss_conf 9999999999887644887879---99999999999999999999999--999999998620624778998620339998
Q 000553 1018 NILLANFVGLLGIAVVLSYVQV---FFLLLLVPFWFIYSKLQFFYRST--SRELRRLDSVSRSPIYASFTETLNGSSTIR 1092 (1428)
Q Consensus 1018 ~~~~~~~~~~i~~~~~i~~~~~---~~~~~~~p~~~~~~~i~~~y~~~--sr~l~rl~~~~~spl~~~~~Etl~Gl~tIR 1092 (1428)
..++..++.++..++++.+..| .++++.+|+++++.+++..+.+. .+..+.. +....++.|+++|+.|||
T Consensus 830 ~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~e~l~gi~ti~ 904 (1284)
T 3g5u_A 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKEL-----EGSGKIATEAIENFRTVV 904 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTTCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999996999999999999999999999999999999999999-----999999999998899999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH---------HHHHHHHHHHHHHHH
Q ss_conf 518199999999999999999999999999------------------99999999---------999999999999999
Q 000553 1093 AFKSEDYFMAKFKEHVVLYQRTSYSELTAS------------------LWLSLRLQ---------VGLALSYAAPIVSLL 1145 (1428)
Q Consensus 1093 af~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------~wl~~~l~---------~glal~~~~~~~~~l 1145 (1428)
+|++++.+.+++.+..+...+......... .|++..+- +...+.+.......+
T Consensus 905 a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~ 984 (1284)
T 3g5u_A 905 SLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAV 984 (1284)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 84659999999999999999999999999999999999999999999999999999909806999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEE
Q ss_conf 99999999999997799999863048710002678999999998619999999997799-99520222599757959999
Q 000553 1146 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGI 1224 (1428)
Q Consensus 1146 ~~li~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgI 1224 (1428)
..+...+.++.....+++|+.++.+.++|.........+.++.+|.|+|+||+++|+.. ..++|+|+||+|++||++||
T Consensus 985 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~i 1064 (1284)
T 3g5u_A 985 GQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064 (1284)
T ss_dssp HHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCCEEEE
T ss_conf 99999999999999999999999838876666555665456777857999989977999987002030599769988999
Q ss_pred ECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC---CCCHHHHHHH
Q ss_conf 8799994899999983479899846999996179999376723508980776556775788328699---9993789999
Q 000553 1225 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDLKIWSV 1301 (1428)
Q Consensus 1225 vGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~---~~sd~ei~~a 1301 (1428)
||+||||||||+++|+|+++|++|+|.+||+|++.++++.+|+++++|||||.+|++|||+|+.++. ..++++++++
T Consensus 1065 vG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~ 1144 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA 1144 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 88999978999999946867899779899998000789999702689877874066669999746687789999999999
Q ss_pred HHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9980299999968--99315305999999249999999998726997899846566989997999999999836994799
Q 000553 1302 LEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1379 (1428)
Q Consensus 1302 L~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI 1379 (1428)
+++++++++++.+ |+||.++|+|.+||||||||+|||||++++|+||+||||||++|.++++.|++.|++..+++|+|
T Consensus 1145 ~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi 1224 (1284)
T 3g5u_A 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCI 1224 (1284)
T ss_dssp HHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEE
T ss_pred HHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99839599997270424561178889338999999999999974999999868755579999999999999867999899
Q ss_pred EECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHC
Q ss_conf 861580366400979999498597866945885039938999998507
Q 000553 1380 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1380 ~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~g 1427 (1428)
+||||++++.+||||+||++|+++|.|+|++|++++ |.|++|++.+.
T Consensus 1225 ~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1225 VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQA 1271 (1284)
T ss_dssp EECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSC-SHHHHHHHHHC
T ss_pred EEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHHHHHH
T ss_conf 995587999809989999899899977899998477-77999999976
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=740.92 Aligned_cols=486 Identities=20% Similarity=0.281 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 56889999989999999999999999999999999999985110787333246772369999833813442004699999
Q 000553 940 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1019 (1428)
Q Consensus 940 ~~l~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~ 1019 (1428)
.+...|++++++..++.++..+++.+.+.+...+++.++++++++.|++|||++++|+++||+++|++.+.+.+...+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999997889899879984899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHH
Q ss_conf 99999999887644887879999999999999999999999999999999986206247789986203399985181999
Q 000553 1020 LLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY 1099 (1428)
Q Consensus 1020 ~~~~~~~~i~~~~~i~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~ 1099 (1428)
++..++.+++.++++.+..|.+.++++..++++..+..++.+..+...+......+...+++.|+++|+.+||+|++|+.
T Consensus 217 ~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 296 (1321)
T 4f4c_A 217 AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRY 296 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999999999989999999999999999999999999999999999999999999999983999998214299
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH------H---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999------------------999999999------9---999999999999999999999
Q 000553 1100 FMAKFKEHVVLYQRTSYSELTA------------------SLWLSLRLQ------V---GLALSYAAPIVSLLGNFLSSF 1152 (1428)
Q Consensus 1100 ~~~~~~~~~d~~~~~~~~~~~~------------------~~wl~~~l~------~---glal~~~~~~~~~l~~li~~~ 1152 (1428)
+.+++.+..+...+........ ..|++..+- + ...+.+...+..++..+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~ 376 (1321)
T 4f4c_A 297 ELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQL 376 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999599869999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCC
Q ss_conf 9999997799999863048710002678999999998619999999997799-995202225997579599998799994
Q 000553 1153 TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAG 1231 (1428)
Q Consensus 1153 ~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSG 1231 (1428)
..+.....|++|+.++++.+++........+.+.+.+|.|+|+||+|+|+.. ..++|+|+||+|+|||++||||+||||
T Consensus 377 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsG 456 (1321)
T 4f4c_A 377 AVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCG 456 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCC
T ss_conf 99999999999999997178534566655656778887679998554079999874333318862288278998058985
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCCHHHH
Q ss_conf 8999999834798998469999961799993767235089807765567757883286999-993789999998029999
Q 000553 1232 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEE 1310 (1428)
Q Consensus 1232 KSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~-~sd~ei~~aL~~~~L~~~ 1310 (1428)
||||+++|+|+|+|.+|+|.|||+|+++++++++|+++++|||||++|+||||+|+..+.+ .+|+++++|++.++++++
T Consensus 457 KSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~ 536 (1321)
T 4f4c_A 457 KSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKF 536 (1321)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHH
T ss_conf 77888875456516448615799650112599985046665875332078616788641552209999999987565468
Q ss_pred HHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 9968--99315305999999249999999998726997899846566989997999999999836994799861580366
Q 000553 1311 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTV 1388 (1428)
Q Consensus 1311 i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti 1388 (1428)
++.+ |+||.++|+|.+||||||||++||||++++|+|+|||||||++|.+||+.+++.|++..+++|+|+||||++++
T Consensus 537 i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred HHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 87088888607558988777778799999998725999899845544688789999999999984798899973638789
Q ss_pred HHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 40097999949859786694588503993899999850
Q 000553 1389 LNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1389 ~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~ 1426 (1428)
.+||+|+||++|+|+|.|+|+||+++ ++.|++|++.+
T Consensus 617 ~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q 653 (1321)
T 4f4c_A 617 RNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQ 653 (1321)
T ss_dssp TTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHH
T ss_pred HHCCEEEEEECCEEECCCCHHHHHHH-HHHHHHHHHHH
T ss_conf 86898999639965136899999985-32799999962
No 4
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=711.69 Aligned_cols=487 Identities=22% Similarity=0.289 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 15688999998999999999999999999999999999998511078733324677236999983381344200469999
Q 000553 939 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1018 (1428)
Q Consensus 939 ~~~l~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~ 1018 (1428)
..|..+|++++++..++.+++.+++.+.+.+...++|.++++++++.|++||+++++|+++||+++|++.+++.++..+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 108 TTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999869989975688778999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHH
Q ss_conf 99999999988764488787999999999999999999999999999999998620624778998620339998518199
Q 000553 1019 ILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED 1098 (1428)
Q Consensus 1019 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~ 1098 (1428)
.++..++.+++.++++.+..|.++++++.+..++..+..++.+..+...+....+.+++.+++.|+++|+.|||+|++|+
T Consensus 188 ~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~ 267 (1284)
T 3g5u_A 188 MFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHH
T ss_conf 99999999999999999998999999999999999999999999999999999999999999999997879999846539
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999------------------9999999999999---------999999999999999999999
Q 000553 1099 YFMAKFKEHVVLYQRTSYS------------------ELTASLWLSLRLQ---------VGLALSYAAPIVSLLGNFLSS 1151 (1428)
Q Consensus 1099 ~~~~~~~~~~d~~~~~~~~------------------~~~~~~wl~~~l~---------~glal~~~~~~~~~l~~li~~ 1151 (1428)
.+.+++.+..+...+.... ......|++..+- +..++.+.+.....+..+...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~ 347 (1284)
T 3g5u_A 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPN 347 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999929988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCC
Q ss_conf 99999997799999863048710002678999999998619999999997799-99520222599757959999879999
Q 000553 1152 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGA 1230 (1428)
Q Consensus 1152 ~~~~e~~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGS 1230 (1428)
+..++....+++|+.++.+.++|............+.+|.|+|+||+++|+++ .+++|+|+||+|+|||++||||+|||
T Consensus 348 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGs 427 (1284)
T 3g5u_A 348 IEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGC 427 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCC
T ss_conf 99999999999999999728986776665677777777718999989976999987101254589759988999899999
Q ss_pred CHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCHHH
Q ss_conf 4899999983479899846999996179999376723508980776556775788328699-999378999999802999
Q 000553 1231 GKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKE 1309 (1428)
Q Consensus 1231 GKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~ei~~aL~~~~L~~ 1309 (1428)
|||||+++|.|+++|++|+|.+||+|+++++++++|+++++|||||++|+||||+|+.++. ..++++++++++.+++++
T Consensus 428 GKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~ 507 (1284)
T 3g5u_A 428 GKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507 (1284)
T ss_dssp SHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 79999999807889997389999998775799999865489868875377669999745798999999999999829699
Q ss_pred HHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 99968--9931530599999924999999999872699789984656698999799999999983699479986158036
Q 000553 1310 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1387 (1428)
Q Consensus 1310 ~i~~l--gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~t 1387 (1428)
+++.+ |+|+.++|+|.+||||||||+|||||++++|+||+||||||++|.+|++.+++.+++..+++|+|+||||+++
T Consensus 508 ~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 587 (1284)
T 3g5u_A 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587 (1284)
T ss_dssp HHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHH
T ss_conf 99746563345014787865999999999999995299989997987777999999999999997399989999407789
Q ss_pred HHHCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 640097999949859786694588503993899999850
Q 000553 1388 VLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1388 i~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~ 1426 (1428)
+.+||+|+||++|+++|.|+|++|++++ +.|++++..+
T Consensus 588 i~~~d~i~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~~ 625 (1284)
T 3g5u_A 588 VRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQ 625 (1284)
T ss_dssp HTTCSEEEECSSSCCCCEECHHHHHHTT-SHHHHHHHHT
T ss_pred HHCCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHHHHH
T ss_conf 9749989999899999978899998678-7799999974
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=673.61 Aligned_cols=534 Identities=25% Similarity=0.366 Sum_probs=444.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998852458999999999999999984234444432113488787765015688999998999999999999999999
Q 000553 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 967 (1428)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~v~~~l~~~~~~~~~~~~~~~~~~~ 967 (1428)
....|++...+.. .+.+++.++..+.....+++++.+++.............++.+++++.++..++.+++.+.....+
T Consensus 27 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (598)
T 3qf4_B 27 RLLGYLRPHTFTL-IMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLS 105 (598)
T ss_dssp HHGGGTGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-999999999999999999999999999973688899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999851107873332467723699998338134420046999999999999988764488787999999999
Q 000553 968 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1047 (1428)
Q Consensus 968 ~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~p 1047 (1428)
.+...++|.++++++++.|++||+++++|+++||+++|++.+++.+...+..++..++.+++.++++.+..|+++++.+.
T Consensus 106 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 185 (598)
T 3qf4_B 106 QDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLS 185 (598)
T ss_dssp HHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999977999997688889999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999862062477899862033999851819999999999999999999999999999999
Q 000553 1048 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1127 (1428)
Q Consensus 1048 ~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1127 (1428)
..+++..+..++.+..++..+...+..+++.+++.|+++|+.+||+|++|+.+.+++.+..+...+..........+...
T Consensus 186 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (598)
T 3qf4_B 186 IVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPP 265 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999997379999974870999999999999999999999999999999
Q ss_pred HHH------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 999------------------------9---9999999999999999999999999997799999863048710002678
Q 000553 1128 RLQ------------------------V---GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ 1180 (1428)
Q Consensus 1128 ~l~------------------------~---glal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~E~~~~~~ 1180 (1428)
..+ + ...+.++..+..++..+...+.+++....+++|+.++.+.++|....
T Consensus 266 ~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-- 343 (598)
T 3qf4_B 266 LMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-- 343 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_conf 999999999999999999999859978999999999999999999999999999999999999999997688777777--
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC
Q ss_conf 99999999861999999999779999520222599757959999879999489999998347989984699999617999
Q 000553 1181 SLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1260 (1428)
Q Consensus 1181 ~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i 1260 (1428)
...+.++..|.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+|++++
T Consensus 344 ~~~~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~ 422 (598)
T 3qf4_B 344 DAVELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422 (598)
T ss_dssp SCCCCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGS
T ss_pred CCCCCCCCCCEEEEEEEEEECCCC-CCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHC
T ss_conf 777777777718999989977999-8601222799869988999899999699999999458579980899999983018
Q ss_pred CHHHHHCCEEEEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHH
Q ss_conf 93767235089807765567757883286999-9937899999980299999968--99315305999999249999999
Q 000553 1261 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICL 1337 (1428)
Q Consensus 1261 ~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~-~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll~L 1337 (1428)
+.+.+|++++++||||.+|++|||+|+.++.. .++++++++++.+++.++++.+ |+|+.++|+|.+||||||||++|
T Consensus 423 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~i 502 (598)
T 3qf4_B 423 KRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAI 502 (598)
T ss_dssp CHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHH
T ss_conf 89999841089907982324639999744799999999999999969788897464532364227889879999999999
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf 99872699789984656698999799999999983699479986158036640097999949859786694588503993
Q 000553 1338 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECS 1417 (1428)
Q Consensus 1338 ARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~~s 1417 (1428)
|||++++|+||+||||||++|.++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++
T Consensus 503 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~ 581 (598)
T 3qf4_B 503 TRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RG 581 (598)
T ss_dssp HHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TC
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHHHHHC-CC
T ss_conf 99996499999998976679999999999999998089989999427789971998999989999987789999867-87
Q ss_pred HHHHHHHHH
Q ss_conf 899999850
Q 000553 1418 VFSSFVRAS 1426 (1428)
Q Consensus 1418 ~f~~l~~~~ 1426 (1428)
.|++++...
T Consensus 582 ~~~~~~~~~ 590 (598)
T 3qf4_B 582 FYYELFTSQ 590 (598)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 799999997
No 6
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=672.77 Aligned_cols=542 Identities=23% Similarity=0.311 Sum_probs=430.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75017889998852458999999999999999984234444432113488787765015688999998999999999999
Q 000553 882 GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAF 961 (1428)
Q Consensus 882 g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~v~~~l~~~~~~~~~~~~~ 961 (1428)
|...++.++.|++...+.... .+++.++..++....+++++++++.............+..+++++.++..++.++..+
T Consensus 7 g~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 7 GGGGSKTLARYLKPYWIFAVL-APLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp -CCCCCCGGGGTGGGHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 853499999999999999999-9999999999999999999999999873698799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999851107873332467723699998338134420046999999999999988764488787999
Q 000553 962 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF 1041 (1428)
Q Consensus 962 ~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~ 1041 (1428)
...+.+.+...++|.++++++++.|+.||+++++|+++||+++|++.+++.+...+..++...+.+++.++++.+..|.+
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 165 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKL 165 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999978897997658889999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999862062477899862033999851819999999999999999999999999
Q 000553 1042 LLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1121 (1428)
Q Consensus 1042 ~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~~ 1121 (1428)
.++++..++++..+..++.+..+...+...+..+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+........
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
T 3qf4_A 166 SSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSL 245 (587)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999998559999986214999999999999999999999999
Q ss_pred HH------------------HHHHHHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99------------------9999999------99---999999999999999999999999997799999863048710
Q 000553 1122 SL------------------WLSLRLQ------VG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1174 (1428)
Q Consensus 1122 ~~------------------wl~~~l~------~g---lal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~E 1174 (1428)
.. |++..+- +| ..+.+...+..++..+...+..+.....+.+|+.++.+.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 325 (587)
T 3qf4_A 246 IVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999984993899999999999999999999999999999999999999999768976
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 00267899999999861999999999779999520222599757959999879999489999998347989984699999
Q 000553 1175 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1254 (1428)
Q Consensus 1175 ~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1254 (1428)
..... .+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||
T Consensus 326 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 326 IEEAD-NALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCCT-TCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCCC-CCCCCCCCCCCEEEEEEEEECCCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 57887-76566888880799788998489997642111799869988999899999799999999278669986798999
Q ss_pred EECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHH
Q ss_conf 61799993767235089807765567757883286999-9937899999980299999968--99315305999999249
Q 000553 1255 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1331 (1428)
Q Consensus 1255 ~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~-~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQ 1331 (1428)
+|+++++.+++|++++++||+|.+|++|||||+.++.. .++++++++++.+++.++++.+ |+|+.+++.|.+|||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred EECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHCCCCCCCCHHH
T ss_conf 98340789999841389778986767559999852488999999999999968499997565312127518989929999
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHH
Q ss_conf 99999999872699789984656698999799999999983699479986158036640097999949859786694588
Q 000553 1332 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1411 (1428)
Q Consensus 1332 rQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~L 1411 (1428)
|||++||||++++|+|++||||||++|+++++.+++.+++..+++|+|+||||++++..||+|++|++|+++|.|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999999997299999997975447999999999999986799989998227688981998999989989997889999
Q ss_pred HCCCCCHHHHHHHHH
Q ss_conf 503993899999850
Q 000553 1412 LQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1412 l~~~~s~f~~l~~~~ 1426 (1428)
++++ +.|+++++..
T Consensus 565 ~~~~-~~~~~~~~~~ 578 (587)
T 3qf4_A 565 LEHC-KPYREIYESQ 578 (587)
T ss_dssp HHHC-HHHHHHHHHH
T ss_pred HHCC-CHHHHHHHHH
T ss_conf 8678-3999999998
No 7
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=652.92 Aligned_cols=481 Identities=23% Similarity=0.391 Sum_probs=337.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998999999999999999999999999999998511078733324677236999983381344200469999999999
Q 000553 945 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1024 (1428)
Q Consensus 945 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1024 (1428)
+.++.++..++.+++.+...+.+.+...+++.++++++++.|++||+++++|+++||+++|++.+++.+...+..++...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 146 (578)
T 4a82_A 67 LFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDC 146 (578)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999878999976898699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHH
Q ss_conf 99988764488787999999999999999999999999999999998620624778998620339998518199999999
Q 000553 1025 VGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1104 (1428)
Q Consensus 1025 ~~~i~~~~~i~~~~~~~~~~~~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~ 1104 (1428)
+.+++.++++.+..|++.++.+...+++..+..++.+..++..+......+++.+++.|+++|+.+||+|++|+.+.+++
T Consensus 147 ~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 226 (578)
T 4a82_A 147 ITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNF 226 (578)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999996999999999999999999999999999999999999999999999982499999816649999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999------------------99999999---------999999999999999999999999999
Q 000553 1105 KEHVVLYQRTSYSELTAS------------------LWLSLRLQ---------VGLALSYAAPIVSLLGNFLSSFTETEK 1157 (1428)
Q Consensus 1105 ~~~~d~~~~~~~~~~~~~------------------~wl~~~l~---------~glal~~~~~~~~~l~~li~~~~~~e~ 1157 (1428)
.+..+...+......... .|++..+- +...+.+...+..++..+...+..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 306 (578)
T 4a82_A 227 DKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQ 306 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999859958999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 97799999863048710002678999999998619999999997799995202225997579599998799994899999
Q 000553 1158 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1237 (1428)
Q Consensus 1158 ~~~sveRi~~~~~~~~E~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~ 1237 (1428)
...+++|+.++.+.++|..... .+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++||+||||||||||++
T Consensus 307 ~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~ 385 (578)
T 4a82_A 307 SFASMDRVFQLIDEDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN 385 (578)
T ss_dssp HHHHHHHHHHHHTCCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHH
T ss_conf 9999999999976897666787-766667778807999999975899974134337998799999998999985999999
Q ss_pred HHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHC--
Q ss_conf 983479899846999996179999376723508980776556775788328699-99937899999980299999968--
Q 000553 1238 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV-- 1314 (1428)
Q Consensus 1238 ~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~ei~~aL~~~~L~~~i~~l-- 1314 (1428)
+|.|+++|++|+|.+||.|+++++.+++|++++++||+|.+|++|+|||+..+. ..++++++++++.+++.++++.+
T Consensus 386 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 465 (578)
T 4a82_A 386 LIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQ 465 (578)
T ss_dssp TTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTT
T ss_pred HHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCC
T ss_conf 98467889996799999984427899996006899289834764599998527999889999999988095999975733
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEE
Q ss_conf 99315305999999249999999998726997899846566989997999999999836994799861580366400979
Q 000553 1315 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEI 1394 (1428)
Q Consensus 1315 gLdt~v~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI 1394 (1428)
|+|+.++|+|.+||||||||++||||++++|+|++||||||++|+++++.+++.+++..+++|+|+||||++++..||+|
T Consensus 466 g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i 545 (578)
T 4a82_A 466 GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKI 545 (578)
T ss_dssp GGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEE
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCEE
T ss_conf 01025306889679999999999999974999999978654579999999999999980899799983178999719989
Q ss_pred EEEECCEEEEECCHHHHHCCCCCHHHHHHHHHC
Q ss_conf 999498597866945885039938999998507
Q 000553 1395 LILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1427 (1428)
Q Consensus 1395 ~vl~~G~ivE~g~p~~Ll~~~~s~f~~l~~~~g 1427 (1428)
++|++|+++|.|+|+||++++ +.|+++++.+.
T Consensus 546 ~~l~~G~i~~~g~~~el~~~~-~~~~~~~~~q~ 577 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIAKQ-GAYEHLYSIQN 577 (578)
T ss_dssp EEEETTEEEEEECHHHHHHTT-SHHHHHHTTTT
T ss_pred EEEECCEEEEECCHHHHHHCC-CHHHHHHHHHC
T ss_conf 999899899988899998588-38999998506
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=650.79 Aligned_cols=533 Identities=23% Similarity=0.320 Sum_probs=441.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999885245899999999999999998423444443211348878776501568-899999899999999999999999
Q 000553 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYL-VVLCIFCMFNSFLTLVRAFSFAFG 966 (1428)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l-~v~~~l~~~~~~~~~~~~~~~~~~ 966 (1428)
.+..|++...+.... .+++.++..+.....+++++++++..... .......++ .+++++.++..++.+++.+...+.
T Consensus 15 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (582)
T 3b60_A 15 RLWPTIAPFKAGLIV-AGIALILNAASDTFMLSLLKPLLDDGFGK-TDRSVLLWMPLVVIGLMILRGITSYISSYCISWV 92 (582)
T ss_dssp HHHHHHGGGHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHSSTTS-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999-99999999999999999999999988436-8657999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985110787333246772369999833813442004699999999999998876448878799999999
Q 000553 967 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1046 (1428)
Q Consensus 967 ~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~ 1046 (1428)
+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.++++.+.+|+++++.+
T Consensus 93 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 172 (582)
T 3b60_A 93 SGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILV 172 (582)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998099999788986589999998799999999999999999999999999999998099999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999986206247789986203399985181999999999999999999999999999999
Q 000553 1047 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1126 (1428)
Q Consensus 1047 p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~ 1126 (1428)
...+++..+..++.+..++..+......+++.+++.|+++|+.+||+|++++.+.+++.+..+...+........+.|..
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3b60_A 173 VLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISD 252 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999961999998376899999999999999999999999999999
Q ss_pred HHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999---------------------------9999999999999999999999999999779999986304871000267
Q 000553 1127 LRLQ---------------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGY 1179 (1428)
Q Consensus 1127 ~~l~---------------------------~glal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~E~~~~~ 1179 (1428)
...+ +...+.++..+..++..+...+.++.....+++|+.++.+.++|....
T Consensus 253 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~- 331 (582)
T 3b60_A 253 PIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG- 331 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_conf 9999999999999999999999849998999999999999999999999999999999999999999997599876677-
Q ss_pred CCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
Q ss_conf 89999999986199999999977999952022259975795999987999948999999834798998469999961799
Q 000553 1180 QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1259 (1428)
Q Consensus 1180 ~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~ 1259 (1428)
+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++
T Consensus 332 --~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 332 --KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp --CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred --CCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCC
T ss_conf --777778888479998899739999744156159976999899989999989999999861068989769799998230
Q ss_pred CCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHH
Q ss_conf 99376723508980776556775788328699--99937899999980299999968--993153059999992499999
Q 000553 1260 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1260 i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~--~~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll 1335 (1428)
++.+.+|++++++||+|.+|++|+|||+.++. ..++++++++++.+++.++++.+ |+|+.+++.|.+||||||||+
T Consensus 410 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 410 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp BCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred CCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 69999996080880687477878999985459999899999999998497999984504114511479887899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 99998726997899846566989997999999999836994799861580366400979999498597866945885039
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1336 ~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~ 1415 (1428)
+||||++++|+|++||||||++|+++++.+++.|++..+++|+|+|+||++++..||+|++|++|+++|.|+|++|++++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 99999972899899978655579899999999999996799799994547789859989999788898845899998769
Q ss_pred CCHHHHHHHHH
Q ss_conf 93899999850
Q 000553 1416 CSVFSSFVRAS 1426 (1428)
Q Consensus 1416 ~s~f~~l~~~~ 1426 (1428)
+.|+++++.+
T Consensus 570 -~~~~~~~~~q 579 (582)
T 3b60_A 570 -GVYAQLHKMQ 579 (582)
T ss_dssp -SSHHHHHHHT
T ss_pred -CHHHHHHHHH
T ss_conf -8899999975
No 9
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=647.81 Aligned_cols=533 Identities=23% Similarity=0.337 Sum_probs=439.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998852458999999999999999984234444432113488787765015688-99999899999999999999999
Q 000553 888 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLV-VLCIFCMFNSFLTLVRAFSFAFG 966 (1428)
Q Consensus 888 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~-v~~~l~~~~~~~~~~~~~~~~~~ 966 (1428)
.+..|++...+.... .+++.++..+.....+++++++++..... .......++. +++++.++..++.++..+.....
T Consensus 15 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (582)
T 3b5x_A 15 RLWTYIRLYKAGLVV-STIALVINAAADTYMISLLKPLLDEGFGN-AESNFLRILPFMILGLMFVRGLSGFASSYCLSWV 92 (582)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998899999999-99999999999999999999999998646-8667999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999985110787333246772369999833813442004699999999999998876448878799999999
Q 000553 967 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1046 (1428)
Q Consensus 967 ~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~ 1046 (1428)
+.+...+++.++++++++.|++||+++++|++++|+++|++.++..+...+..++..++.+++.++++.+.+|.++++.+
T Consensus 93 ~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 172 (582)
T 3b5x_A 93 SGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLI 172 (582)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998699999778987899999998899999999999999999999999999999998299999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999986206247789986203399985181999999999999999999999999999999
Q 000553 1047 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1126 (1428)
Q Consensus 1047 p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl~ 1126 (1428)
..++++..+..++.+..++..+......+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+........+.|..
T Consensus 173 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3b5x_A 173 VVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD 252 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999951999997087599999999999999999999999999999
Q ss_pred HHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999---------------------------9999999999999999999999999999779999986304871000267
Q 000553 1127 LRLQ---------------------------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGY 1179 (1428)
Q Consensus 1127 ~~l~---------------------------~glal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~E~~~~~ 1179 (1428)
...+ +...+.++..+..++..+...+.++.....+++|+.++.+.++|....
T Consensus 253 ~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~- 331 (582)
T 3b5x_A 253 PVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG- 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
T ss_conf 9999999999999999999999859988999999999999999999999999999999999999999997589767777-
Q ss_pred CCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
Q ss_conf 89999999986199999999977999952022259975795999987999948999999834798998469999961799
Q 000553 1180 QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1259 (1428)
Q Consensus 1180 ~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~ 1259 (1428)
+.+.++..|.|+++||+++|+++.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+.+
T Consensus 332 --~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b5x_A 332 --KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409 (582)
T ss_pred --CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHH
T ss_conf --777777888289999899728998654004169987999899989999979999999965778999879899998563
Q ss_pred CCHHHHHCCEEEEECCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHH
Q ss_conf 99376723508980776556775788328699--99937899999980299999968--993153059999992499999
Q 000553 1260 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLI 1335 (1428)
Q Consensus 1260 i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~--~~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~GQrQll 1335 (1428)
++.+.+|++++++||+|.+|++|+|+|+..+. ..++++++++++.+++.++++.+ |+|+.+++.|.+||||||||+
T Consensus 410 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred CCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHH
T ss_conf 88999964858982799053102999985668899999999999998798999984765334510688884799999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 99998726997899846566989997999999999836994799861580366400979999498597866945885039
Q 000553 1336 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1415 (1428)
Q Consensus 1336 ~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~Ll~~~ 1415 (1428)
+||||++++|+|++||||||++|+++++.+++.|++..+++|+|+|+||++++..||+|++|++|+++|.|+|++|++++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 99999974999999978544689999999999999972899899993688999819989999899899977899998488
Q ss_pred CCHHHHHHHHH
Q ss_conf 93899999850
Q 000553 1416 CSVFSSFVRAS 1426 (1428)
Q Consensus 1416 ~s~f~~l~~~~ 1426 (1428)
+.|+++++.+
T Consensus 570 -~~~~~~~~~q 579 (582)
T 3b5x_A 570 -GAYAQLHRIQ 579 (582)
T ss_pred -CHHHHHHHHH
T ss_conf -5899999986
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=640.18 Aligned_cols=536 Identities=24% Similarity=0.289 Sum_probs=425.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998852458999999999999999984234444432113488787-76--50156889999989999999999999999
Q 000553 889 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQT-KY--STSFYLVVLCIFCMFNSFLTLVRAFSFAF 965 (1428)
Q Consensus 889 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~-~~--~~~~~l~v~~~l~~~~~~~~~~~~~~~~~ 965 (1428)
+..|++...+.... .+++.++..+.....+++++++++....... .. ....++.+++++.++..++.+++.+....
T Consensus 10 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (595)
T 2yl4_A 10 LLGLAYPERRRLAA-AVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQT 88 (595)
T ss_dssp HHHHHGGGHHHHHH-HHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998878999999-99999999999999999999999999735740266799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998511078733324677236999983381344200469999999999999887644887879999999
Q 000553 966 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1045 (1428)
Q Consensus 966 ~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~ 1045 (1428)
.+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..++..++.+++.++++.+..|++++++
T Consensus 89 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 168 (595)
T 2yl4_A 89 SGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFV 168 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999819999977798488999999999999999999999999999999999999999819999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999998620624778998620339998518199999999999999999999999999999
Q 000553 1046 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1125 (1428)
Q Consensus 1046 ~p~~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIRaf~~~~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1125 (1428)
+...+++..+..++.+..+...+......+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+........+.|.
T Consensus 169 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (595)
T 2yl4_A 169 LSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGF 248 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999981199999837569999999999999999999999999999
Q ss_pred H------------------HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9------------------9999---------999999999999999999999999999977999998630487100026
Q 000553 1126 S------------------LRLQ---------VGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1178 (1428)
Q Consensus 1126 ~------------------~~l~---------~glal~~~~~~~~~l~~li~~~~~~e~~~~sveRi~~~~~~~~E~~~~ 1178 (1428)
. ..+- +...+.++..+..++..+...+.++.....+++|+.++.+.++|....
T Consensus 249 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 328 (595)
T 2yl4_A 249 FGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN 328 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999999999999869978999999999999999999999999999999999999999998389766777
Q ss_pred CCCCCCCCCCCCC-EEEEEEEEEECCC-CCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 7899999999861-9999999997799-9952022259975795999987999948999999834798998469999961
Q 000553 1179 YQSLSPDWPFQGL-IEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1256 (1428)
Q Consensus 1179 ~~~~~~~wp~~g~-I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d 1256 (1428)
...+ +..+..|. |+++||+++|+++ ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||+|
T Consensus 329 ~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 407 (595)
T 2yl4_A 329 EGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHD 407 (595)
T ss_dssp CSBC-CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCC-CCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
T ss_conf 7877-776789983899988998589988812011279984998899989999979999999825857898379999998
Q ss_pred CCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCC----CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHH
Q ss_conf 799993767235089807765567757883286999----9937899999980299999968--9931530599999924
Q 000553 1257 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVG 1330 (1428)
Q Consensus 1257 i~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~----~sd~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS~G 1330 (1428)
+.+++.+.+|++++++||+|.+|++|+++|+..+.. .++++++++++.+++.++++.+ |+|+.+++.|.+||||
T Consensus 408 i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgG 487 (595)
T 2yl4_A 408 IRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487 (595)
T ss_dssp TTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHH
T ss_pred HHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 11179999973228983688326877999984058776656899999999986979999747320135016887868999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCHHH
Q ss_conf 99999999987269978998465669899979999999998369947998615803664009799994985978669458
Q 000553 1331 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQT 1410 (1428)
Q Consensus 1331 QrQll~LARAlL~~~~ILiLDEaTs~lD~~Te~~I~~~i~~~f~~~TvI~IaHRl~ti~~~DrI~vl~~G~ivE~g~p~~ 1410 (1428)
||||++||||++++|+|++||||||++|.++++.+++.|++..+++|+|+|+||++++..||+|++|++|+++|.|+|++
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCEEEEEECCEEEEECCHHH
T ss_conf 99999999999759999999886668998999999999999965997999946878997599899998998999788999
Q ss_pred HHCCCCCHHHHHHHHH
Q ss_conf 8503993899999850
Q 000553 1411 LLQDECSVFSSFVRAS 1426 (1428)
Q Consensus 1411 Ll~~~~s~f~~l~~~~ 1426 (1428)
|++++++.|+++++.+
T Consensus 568 l~~~~~~~~~~~~~~q 583 (595)
T 2yl4_A 568 LLSKPNGIYRKLMNKQ 583 (595)
T ss_dssp ------C---------
T ss_pred HHHCCCHHHHHHHHHH
T ss_conf 9747872999999974
Done!