BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000554
(1428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 39/198 (19%)
Query: 1236 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDA 1295
DI+ G E +P+ CV ++ DS+ + + S VT P+ ++D +
Sbjct: 33 DIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NIDRNI 76
Query: 1296 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE----E 1351
LQ C C + D + + G+ + R YD+ GR++ E E
Sbjct: 77 THLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEFNMAE 118
Query: 1352 GYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGE 1411
LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCEY+GE
Sbjct: 119 PPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 178
Query: 1412 VLDELETNKR-RSRLLFD 1428
++ + E + R LFD
Sbjct: 179 LISDSEADVREEDSYLFD 196
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And Mono-
Methylated H3k9 Peptide
Length = 287
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 39/202 (19%)
Query: 1232 VLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSL 1291
++ DI+ G E +P+ CV ++ DS+ + + S VT P+ ++
Sbjct: 30 IVSRDIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NI 73
Query: 1292 DLDAESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE- 1350
D + LQ C C + D + + G+ + R YD+ GR++ E
Sbjct: 74 DRNITHLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEF 115
Query: 1351 ---EGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCE 1407
E LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCE
Sbjct: 116 NMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCE 175
Query: 1408 YIGEVLDELETNKR-RSRLLFD 1428
Y+GE++ + E + R LFD
Sbjct: 176 YVGELISDSEADVREEDSYLFD 197
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 39/198 (19%)
Query: 1236 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDA 1295
DI+ G E +P+ CV ++ DS+ + + S VT P+ ++D +
Sbjct: 32 DIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NIDRNI 75
Query: 1296 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE----E 1351
LQ C C + D + + G+ + R YD+ GR++ E E
Sbjct: 76 THLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEFNMAE 117
Query: 1352 GYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGE 1411
LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCEY+GE
Sbjct: 118 PPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 177
Query: 1412 VLDELETNKR-RSRLLFD 1428
++ + E + R LFD
Sbjct: 178 LISDSEADVREEDSYLFD 195
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix-
01294
Length = 261
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 39/198 (19%)
Query: 1236 DISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSLDLDA 1295
DI+ G E +P+ CV ++ DS+ + + S VT P+ ++D +
Sbjct: 8 DIARGYERIPIPCV-------------NAVDSEPCPSNYKYVSQNCVTSPM---NIDRNI 51
Query: 1296 ESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE----E 1351
LQ C C + D + + G+ + R YD+ GR++ E E
Sbjct: 52 THLQY-CVCID----------------DCSSSNCMCGQ-LSMRCWYDKDGRLLPEFNMAE 93
Query: 1352 GYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGE 1411
LI+ECNH CSC R C NRV+QNG+R +L++++T + GW VR+ Q I GTFVCEY+GE
Sbjct: 94 PPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGE 153
Query: 1412 VLDELETNKR-RSRLLFD 1428
++ + E + R LFD
Sbjct: 154 LISDSEADVREEDSYLFD 171
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase, G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 41/203 (20%)
Query: 1232 VLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSL 1291
++C D++ G E+VP+ CV +G+ C E + Y+++ ++
Sbjct: 11 IICRDVARGYENVPIPCV--NGVDGEPCP----------------EDYKYISENCETSTM 52
Query: 1292 DLDAESLQLG-CACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE 1350
++D L C C + C C + G+ + R YD+ GR++ E
Sbjct: 53 NIDRNITHLQHCTCVDD-CSSSNC---------------LCGQ-LSIRCWYDKDGRLLQE 95
Query: 1351 ----EGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVC 1406
E LI+ECN CSC R C NRV+Q+G++V+L++++T GW VRA Q I +GTF+C
Sbjct: 96 FNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFIC 155
Query: 1407 EYIGEVLDELETNKRR-SRLLFD 1428
EY+GE++ + E + R LFD
Sbjct: 156 EYVGELISDAEADVREDDSYLFD 178
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 41/203 (20%)
Query: 1232 VLCDDISSGLESVPVACVVDDGLLETLCISADSSDSQKTRCSMPWESFTYVTKPLLDQSL 1291
++C D++ G E+VP+ CV +G+ C E + Y+++ ++
Sbjct: 9 IICRDVARGYENVPIPCV--NGVDGEPCP----------------EDYKYISENCETSTM 50
Query: 1292 DLDAESLQLG-CACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHGRFPYDQTGRVILE 1350
++D L C C + C C + G+ + R YD+ GR++ E
Sbjct: 51 NIDRNITHLQHCTCVDD-CSSSNC---------------LCGQ-LSIRCWYDKDGRLLQE 93
Query: 1351 ----EGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVC 1406
E LI+ECN CSC R C NRV+Q+G++V+L++++T GW VRA Q I +GTF+C
Sbjct: 94 FNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAKMGWGVRALQTIPQGTFIC 153
Query: 1407 EYIGEVLDELETNKRR-SRLLFD 1428
EY+GE++ + E + R LFD
Sbjct: 154 EYVGELISDAEADVREDDSYLFD 176
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase
Clr4
Length = 299
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 1275 PWESFTYVTKPLLDQSLDLDAESLQLGCACANSTCFPETCDHVYLFDNDYEDAKDIDGKS 1334
P F ++++ L Q + + Q GC C++ CD N+ + +D
Sbjct: 42 PSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLG----GCDL-----NNPSRCECLDDLD 92
Query: 1335 VHGRFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVR 1394
F YD GRV + G +IYECN CSC CPNRV+Q G + LE+FKT+ KGW VR
Sbjct: 93 EPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVR 152
Query: 1395 AGQAILRGTFVCEYIGEVLDELETNKR 1421
+ + GTF+ Y+GEV+ E KR
Sbjct: 153 SLRFAPAGTFITCYLGEVITSAEAAKR 179
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 85/154 (55%), Gaps = 10/154 (6%)
Query: 1278 SFTYVTKPLLDQSLDLDAESLQLGCACA-NSTCFPETCDHVYLFDNDYEDAKDIDGKSVH 1336
+F ++ ++ +++ + +S ++GC+CA + C TC + D ++ + D +
Sbjct: 26 NFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPDSDE--EADPYTRK 83
Query: 1337 GRFPYDQTGRV-------ILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENK 1389
RF Y G +L+ IYEC+ C+C + CPNRV++ G V L++F+T+++
Sbjct: 84 KRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDR 143
Query: 1390 GWAVRAGQAILRGTFVCEYIGEVLDELETNKRRS 1423
GW V+ I RG FV Y+GE++ E ++RR+
Sbjct: 144 GWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRA 177
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 1279 FTYVTKPLLDQSLDLDAESLQL-GCACANSTCFPETCDHVYLFDNDYEDAKDIDGKSVHG 1337
F Y ++ D+D + GC C + C P TC + +N Y+D + G
Sbjct: 38 FQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGEN-YDDNSCLRDIGSGG 96
Query: 1338 RFPYDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQ 1397
++ ++ECN +C C C NRV+Q G++ +VFKT KGW +R +
Sbjct: 97 KY------------AEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTHKKGWGLRTLE 144
Query: 1398 AILRGTFVCEYIGEVLDELETNKR 1421
I +G FVCEY GEVL E +R
Sbjct: 145 FIPKGRFVCEYAGEVLGFSEVQRR 168
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation
3-9 Homolog 2
Length = 300
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 1341 YDQTGRVILEEGYLIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTEN-KGWAVRAGQAI 1399
Y++ ++ + G IYECN C C CPNR++Q G + L +F+T N +GW V+ I
Sbjct: 102 YNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKI 161
Query: 1400 LRGTFVCEYIGEVLDELETNKR 1421
R +FV EY+GEV+ E +R
Sbjct: 162 KRMSFVMEYVGEVITSEEAERR 183
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%)
Query: 1354 LIYECNHMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVL 1413
L+ EC+ C C NR Q +EV TE KGW +RA + + TFV EY GEVL
Sbjct: 92 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVL 151
Query: 1414 DELETNKR 1421
D E R
Sbjct: 152 DHKEFKAR 159
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 1354 LIYECN-HMCSCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEV 1412
L+YEC+ +C C N+ ++E+F+T +GW +R I +G FV EY+GE+
Sbjct: 66 LLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQRGWGLRTKTDIKKGEFVNEYVGEL 125
Query: 1413 LDELETNKR 1421
+DE E R
Sbjct: 126 IDEEECRAR 134
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 1322 NDYEDAKDIDG---KSVHGRFPYDQTGRVILEE---GYLIYECN-HMCSCDRTCPNRVLQ 1374
N Y D K + G + + + P D T + +++ + EC+ + C C C N+ +Q
Sbjct: 9 NVYVDVKPLSGYEATTCNCKKPDDDTRKGCVDDCLNRMIFAECSPNTCPCGEQCCNQRIQ 68
Query: 1375 NGVRVK-LEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKR 1421
V+ LE F+ E KGW +R + + G F+ EY+GEV+ E E R
Sbjct: 69 RHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNR 116
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 843 EDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQ 902
E E T++CK+CS+V+ H H++ +HK+ + Y C C FT K + +HV+
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV----KVYPCPFCFKEFTRKDNMTAHVK 61
Query: 903 ERHHV 907
H +
Sbjct: 62 IIHKI 66
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 850 CKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERHHVQF 909
C+IC ++F L H + +H E + Y+C +C F K + HV R H
Sbjct: 10 CEICGKIFRDVYHLNRHKL-SHSGE-----KPYSCPVCGLRFKRKDRMSYHV--RSHDGS 61
Query: 910 VEQCMLQQCIPCGSHFGNTEELWLHVQSVHA 940
V + + C CG F + L H++ VH+
Sbjct: 62 VGKPYI--CQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 70/203 (34%), Gaps = 38/203 (18%)
Query: 824 SSSVVEDSAVLPLAIAGRSEDEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYA 883
SSS V +A+ P EK + C C + F L H H E + Y
Sbjct: 6 SSSSVAQAALEP--------GEKPYACPECGKSFSRSDHLAEHQR-THTGE-----KPYK 51
Query: 884 CAICLDSFTNKKVLESHVQERHHVQFVEQCMLQQCIPCGSHFGNTEELWLHVQSVHAID- 942
C C SF++KK L H +R H +C CG F L H Q H +
Sbjct: 52 CPECGKSFSDKKDLTRH--QRTHTGE----KPYKCPECGKSFSQRANLRAH-QRTHTGEK 104
Query: 943 -FKMSEVAQQHNQ----------SVGEDSPKKLELGYSASVEN----HSENLGSIRKFIC 987
+ E + +Q GE K E G S S E+ H + + C
Sbjct: 105 PYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 988 RFCGLKFDLLPDLGRHHQAAHMG 1010
CG F L HQ H G
Sbjct: 165 PECGKSFSRRDALNV-HQRTHTG 186
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 850 CKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQERH 905
C++C++ F + L H+ +H E + Y C +C +FT + +L H Q+ H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNE-----KPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 844 DEKTHKCKICSQVFLHDQELGVHWMDNHKKEAQWLFRGYACAICLDSFTNKKVLESHVQE 903
E+ C +C + F EL +H M +H E Y C+ C F KK L+SH+ +
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLH-MVSHTGEMP-----YKCSSCSQQFMQKKDLQSHMIK 116
Query: 904 RH 905
H
Sbjct: 117 LH 118
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 881 GYACAICLDSFTNKKVLESHVQERH 905
GY CA+CL F + L SH++E H
Sbjct: 7 GYVCALCLKKFVSSIRLRSHIREVH 31
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-Y334f H4-Lys20me2 Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By Set
Domain Methyltransferases, Set8-y334f / H4-lys20me1 /
Adohcy
Length = 166
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 1363 SCDRTCPNRVLQNGVRVKLEVFKTENKGWAVRAGQAILRGTFVCEYIGEVLDELETNKRR 1422
S +R + ++++G +++ + KG V A + RG FV EY G++++ + KR
Sbjct: 14 SEERKRIDELIESGKEEGMKIDLIDGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKRE 73
Query: 1423 S 1423
+
Sbjct: 74 A 74
>pdb|4IJD|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
pdb|4IJD|B Chain B, Crystal Structure Of Methyltransferase Domain Of Human Pr
Domain- Containing Protein 9
Length = 221
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 859 HDQELGVHWMDNHKKEAQWLFRG-------YACAICLDSFTNKKVLESHVQERHHVQ 908
+ QELG+ W KKE L G + C C +F+++K L HV+ H Q
Sbjct: 167 YGQELGIKWGSKWKKE---LXAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQ 220
>pdb|3RQ0|A Chain A, The Crystal Structure Of A Glycosyl Hydrolases (Gh) Family
Protein 16 From Mycobacterium Smegmatis Str. Mc2 155
Length = 269
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 523 KKPLELGQ-RNRQCTAFIESKGRQCVRWANEGDVYCCVHLASRFTG 567
++P +GQ RN + F++ K +R A +GD Y LAS + G
Sbjct: 76 EQPGRIGQYRNDRRNVFLDGKSNLVIRAAKDGDTYYSAKLASVWEG 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,257,780
Number of Sequences: 62578
Number of extensions: 1823010
Number of successful extensions: 3410
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3372
Number of HSP's gapped (non-prelim): 40
length of query: 1428
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1317
effective length of database: 8,027,179
effective search space: 10571794743
effective search space used: 10571794743
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)