BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000555
(1427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQND 921
G VG SG GK+TL+ ++AG +T G G+ +++ P + R G V Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
P ++V E++ F L +K+ NQR V EV++L L + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK--------PKALSG 136
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1039
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1040 IDIFEAFDELLLMKRGGRVIYGGK 1063
++ D+++++ GRV GK
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVGK 217
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 78/201 (38%), Gaps = 44/201 (21%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL-DEF 224
+ + D++ + G + +GP GKSTLL +AG L++ SG++ ++ D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETI--TSGDLFIGEKRMNDTP 71
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+R + Q+ P L+V E F + GA + IN
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQ---------------- 112
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ V +VL L + + + +SGGQ++RV G +V
Sbjct: 113 ----------------RVNQVAEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAE 151
Query: 345 RKTLFMDEISTGLDSSTTFQI 365
+DE + LD++ Q+
Sbjct: 152 PSVFLLDEPLSNLDAALRVQM 172
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQND 921
G VG SG GK+TL+ ++AG +T G G+ +++ P + R G V Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
P ++V E++ F L +K+ NQR V EV++L L + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK--------PKALSG 136
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1039
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1040 IDIFEAFDELLLMKRGGRVIYGGK 1063
++ D+++++ GRV GK
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVGK 217
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 78/201 (38%), Gaps = 44/201 (21%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL-DEF 224
+ + D++ + G + +GP GKSTLL +AG L++ SG++ ++ D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETI--TSGDLFIGEKRMNDTP 71
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+R + Q+ P L+V E F + GA + IN
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQ---------------- 112
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ V +VL L + + + +SGGQ++RV G +V
Sbjct: 113 ----------------RVNQVAEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAE 151
Query: 345 RKTLFMDEISTGLDSSTTFQI 365
+DE + LD++ Q+
Sbjct: 152 PSVFLLDEPLSNLDAALRVQM 172
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQND 921
G VG SG GK+TL+ ++AG +T G G+ +++ P + R G V Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE----RGVGMVFQSY 84
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
P ++V E++ F L +K+ NQR V EV++L L + LS
Sbjct: 85 ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK--------PKALSG 136
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPS 1039
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-Q 194
Query: 1040 IDIFEAFDELLLMKRGGRVIYGGK 1063
++ D+++++ GRV GK
Sbjct: 195 VEAMTLADKIVVLD-AGRVAQVGK 217
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 44/201 (21%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL-DEF 224
+ + D++ + G + +GP GKSTLL +AG L++ SG++ ++ D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETI--TSGDLFIGEKRMNDTP 71
Query: 225 HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+R + Q+ P L+V E F + GA + IN
Sbjct: 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQ---------------- 112
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
+ V +VL L + + + +SGGQ++RV G +V
Sbjct: 113 ----------------RVNQVAEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAE 151
Query: 345 RKTLFMDEISTGLDSSTTFQI 365
+D+ + LD++ Q+
Sbjct: 152 PSVFLLDQPLSNLDAALRVQM 172
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 18/205 (8%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +V+ F G + +VG +G+GKTTL+ +LAG G+I + G P + +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 914 SGYVEQNDIHSPQV---TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
GYV QN S Q+ TVEE + FS + E +R +++V+ LV L L A
Sbjct: 83 VGYVFQN--PSSQIIGATVEEDVAFSLEIMGLDESEMRKR---IKKVLELVGLSGLAAA- 136
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
LS Q++RL IA L + + +DEP S LD + + + + + + G+
Sbjct: 137 ----DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG 192
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRG 1055
++ H+ ++ + D +L + G
Sbjct: 193 IILVTHE--LEYLDDMDFILHISNG 215
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 45/215 (20%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
+L DV+ + G++ +++G SGK+TLL LAG L + +G I +G D F +++
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAA----AGEIFLDGSPADPFLLRK 81
Query: 229 TSAYISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
Y+ Q + I TV E F+ G +E E + I+
Sbjct: 82 NVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDES-----------EMRKRIKK------- 123
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347
VL+++GL + N +SGGQK+R+ M+ +
Sbjct: 124 -----------------VLELVGLSGLAAADPLN-----LSGGQKQRLAIASMLARDTRF 161
Query: 348 LFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
L +DE + LD + +I + L + ++ IL+
Sbjct: 162 LALDEPVSMLDPPSQREIFQVLESLKNEGKGIILV 196
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 50/261 (19%)
Query: 854 LLSNVSGVFSPGVLTAL---------------VGSSGAGKTTLMDVLAGRK---TGGYIE 895
++ NVS VF G + AL +G SGAGKTT M ++AG TG
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 896 GDIKISG-----YPKEQSTFARISGYVEQNDIHSPQVTVEESLWFS-ANLRLSKEVSKNQ 949
D ++ P E R G V Q P +T E++ F N+++SKE + +
Sbjct: 65 DDRLVASNGKLIVPPED----RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
VEEV +++++ + L FP LS Q++R+ +A LV +PS++ +DEP S L
Sbjct: 121 ----VEEVAKILDIHHV---LNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1010 DAR---AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV-------I 1059
DAR +A +++ V++ + G T++ H P+ DIF D + ++ +G V +
Sbjct: 172 DARMRDSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDL 228
Query: 1060 YGGKLGVHSKTMIDYFQALDG 1080
Y + + ++I L+G
Sbjct: 229 YDNPVSIQVASLIGEINELEG 249
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 125/257 (48%), Gaps = 42/257 (16%)
Query: 854 LLSNVSGVFSPGVLTAL---------------VGSSGAGKTTLMDVLAGRK---TGG-YI 894
++ NVS VF G + AL +G SGAGKTT M ++AG TG Y
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFS-ANLRLSKEVSKNQRHEF 953
+ + S R G V Q P +T E++ F N+++SKE + +
Sbjct: 65 DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---- 120
Query: 954 VEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR- 1012
VEEV +++++ + L FP LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 121 VEEVAKILDIHHV---LNHFPRE--LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 1013 --AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV-------IYGGK 1063
+A +++ V++ + G T++ H P+ DIF D + ++ +G V +Y
Sbjct: 176 RDSARALVKEVQSRL--GVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Query: 1064 LGVHSKTMIDYFQALDG 1080
+ + ++I L+G
Sbjct: 233 VSIQVASLIGEINELEG 249
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N++ G + +VG SG+GK+TL ++ YI G + I G+ + +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLVELDS 965
R G V Q+++ + ++ + + + K + + H+F+ E L
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LRE 127
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ +VG G+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 128 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 185
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
GRTV+ H+ S + D +++M++ G+++ GK
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 220
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 50/268 (18%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYN 217
F+ K S IL++++ +K G + ++G SGKSTL KL + ++G + +
Sbjct: 9 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRFYIPENGQVLID 63
Query: 218 GYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G+ L D ++R + Q DN + ++ + A
Sbjct: 64 GHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA---------------------- 100
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P ++ + A+ + G +S L T+VG + G+SGGQ++R
Sbjct: 101 ----NPGMSVEKVIYAAKLAGAHDFISE--------LREGYNTIVG-EQGAGLSGGQRQR 147
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXX 394
+ +V K L DE ++ LD + I++ + I+ L T
Sbjct: 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKN 203
Query: 395 XXXXXXXSEGHLVYQGPRAEVLEFFESL 422
+G +V QG E+L ESL
Sbjct: 204 ADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N++ G + +VG SG+GK+TL ++ YI G + I G+ + +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLVELDS 965
R G V Q+++ + ++ + + + K + + H+F+ E L
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LRE 133
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ +VG G+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 134 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 191
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
GRTV+ H+ S + D +++M++ G+++ GK
Sbjct: 192 CKGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 226
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 50/268 (18%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYN 217
F+ K S IL++++ +K G + ++G SGKSTL KL + ++G + +
Sbjct: 15 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRFYIPENGQVLID 69
Query: 218 GYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G+ L D ++R + Q DN + ++ + A
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA---------------------- 106
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P ++ + A+ + G +S L T+VG + G+SGGQ++R
Sbjct: 107 ----NPGMSVEKVIYAAKLAGAHDFISE--------LREGYNTIVG-EQGAGLSGGQRQR 153
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXX 394
+ +V K L DE ++ LD + I++ + I+ L T
Sbjct: 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKN 209
Query: 395 XXXXXXXSEGHLVYQGPRAEVLEFFESL 422
+G +V QG E+L ESL
Sbjct: 210 ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N++ G + +VG SG+GK+TL ++ YI G + I G+ + +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLVELDS 965
R G V Q+++ + ++ + + + K + + H+F+ E L
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LRE 129
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ +VG G+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 130 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 187
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
GRTV+ H+ S + D +++M++ G+++ GK
Sbjct: 188 CKGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 222
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 50/268 (18%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYN 217
F+ K S IL++++ +K G + ++G SGKSTL KL + ++G + +
Sbjct: 11 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRFYIPENGQVLID 65
Query: 218 GYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G+ L D ++R + Q DN + ++ + A
Sbjct: 66 GHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA---------------------- 102
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P ++ + A+ + G +S L T+VG + G+SGGQ++R
Sbjct: 103 ----NPGMSVEKVIYAAKLAGAHDFISE--------LREGYNTIVG-EQGAGLSGGQRQR 149
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXX 394
+ +V K L DE ++ LD + I++ + I+ L T
Sbjct: 150 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKN 205
Query: 395 XXXXXXXSEGHLVYQGPRAEVLEFFESL 422
+G +V QG E+L ESL
Sbjct: 206 ADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 907
K++ + VS G AL+G SG GKTT + +LAG + T G I D+ ++ P +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK- 73
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
R G V QN P +TV E++ F LR ++ +SK++ + V E+ R + +D+L
Sbjct: 74 ---YREVGMVFQNYALYPHMTVFENIAFP--LR-ARRISKDEVEKRVVEIARKLLIDNLL 127
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1026
D + LS Q++R+ +A LV P ++ DEP S LDA I+ +++ +
Sbjct: 128 DR-----KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182
Query: 1027 TGRTVVCTIH 1036
G T V H
Sbjct: 183 LGITSVYVTH 192
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 52/213 (24%)
Query: 154 LTGLRIFKPKRH--SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS 211
+ +R+ K++ + ++ VS VK G LLGP GK+T LL LAG + S
Sbjct: 1 MPSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---S 57
Query: 212 GNITYNGYKLDEFHVQ-RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLN 270
G I ++ +++ + R + Q P +TV E F R +
Sbjct: 58 GEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR-------------- 103
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG---V 327
+S D V K + +++ + ++ N + R +
Sbjct: 104 ----------------------------RISKDEVEKRV-VEIARKLLIDNLLDRKPTQL 134
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 360
SGGQ++RV +V K L DE + LD++
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST 909
K++Q+L ++ G ALVG+SG GK+T + ++ ++ ++G + I G
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTIN 458
Query: 910 ---FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKE-VSKNQRHEFVEEVMR---LVE 962
I G V Q + E N+R +E V+ ++ + V+E +++
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAE-------NIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L D LVG G+ LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 512 LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL- 569
Query: 1023 NTVDTGRTVVCTIHQPSI----DIFEAFDELLLMKRG 1055
+ GRT + H+ S D+ FD +++++G
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +S G ALVGSSG GK+T++ +L + + G + + G +Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE-------LDSL 966
+ + +E + F ++ + N R EE++R + +DSL
Sbjct: 1106 RAQL--------GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 967 RDALVGFPGSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
D G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1025 VDTGRTVVCTIHQPS 1039
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 38/202 (18%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
P R S+ +L +S VK G+ L+G GKST++ L D +G++ +G ++
Sbjct: 1041 PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEI 1097
Query: 222 DEFHVQ--RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIR 279
+ +VQ R I + + + ++ E + G N +Y ++ R KE NI
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAY-----GDNSRVVSY-EEIVRAAKEANIH 1151
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE 339
ID S+ Y +V D +SGGQK+R+
Sbjct: 1152 QF--ID-------------SLPDKYNTRV------------GDKGTQLSGGQKQRIAIAR 1184
Query: 340 MIVGPRKTLFMDEISTGLDSST 361
+V L +DE ++ LD+ +
Sbjct: 1185 ALVRQPHILLLDEATSALDTES 1206
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKST---LLLALAGKLDSSLKKSGNITYNG 218
P R + IL ++ VK G+ L+G GKST L+ L LD G ++ +G
Sbjct: 398 PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD------GMVSIDG 451
Query: 219 YKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
+ +V+ I P L FA I E R
Sbjct: 452 QDIRTINVRYLREIIGVVSQE-PVL------------------FATTIA-----ENIRYG 487
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG--VSGGQKKRVT 336
R +D KA K + + D+++K L +T+VG RG +SGGQK+R+
Sbjct: 488 REDVTMDEIEKAV-----KEANAYDFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIA 536
Query: 337 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
+V K L +DE ++ LD+ + +V+ + + TI++A
Sbjct: 537 IARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIA 582
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST 909
K++Q+L ++ G ALVG+SG GK+T + ++ ++ ++G + I G
Sbjct: 401 KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTIN 458
Query: 910 ---FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKE-VSKNQRHEFVEEVMR---LVE 962
I G V Q + E N+R +E V+ ++ + V+E +++
Sbjct: 459 VRYLREIIGVVSQEPVLFATTIAE-------NIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L D LVG G+ LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 512 LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL- 569
Query: 1023 NTVDTGRTVVCTIHQPSI----DIFEAFDELLLMKRG 1055
+ GRT + H+ S D+ FD +++++G
Sbjct: 570 DKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 20/195 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +S G ALVGSSG GK+T++ +L + + G + + G +Q +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE-------LDSL 966
+ + +E + F ++ + N R EE++R + +DSL
Sbjct: 1106 RAQL--------GIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL 1157
Query: 967 RDALVGFPGSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
D G G LS Q++R+ IA LV P I+ +DE TS LD + +V + +
Sbjct: 1158 PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DK 1216
Query: 1025 VDTGRTVVCTIHQPS 1039
GRT + H+ S
Sbjct: 1217 AREGRTCIVIAHRLS 1231
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 38/202 (18%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
P R S+ +L +S VK G+ L+G GKST++ L D +G++ +G ++
Sbjct: 1041 PTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGKEI 1097
Query: 222 DEFHVQ--RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIR 279
+ +VQ R I + + + ++ E + G N +Y ++ R KE NI
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILFDCSIAENIAY-----GDNSRVVSY-EEIVRAAKEANIH 1151
Query: 280 PSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGE 339
ID S+ Y +V D +SGGQK+R+
Sbjct: 1152 QF--ID-------------SLPDKYNTRV------------GDKGTQLSGGQKQRIAIAR 1184
Query: 340 MIVGPRKTLFMDEISTGLDSST 361
+V L +DE ++ LD+ +
Sbjct: 1185 ALVRQPHILLLDEATSALDTES 1206
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKST---LLLALAGKLDSSLKKSGNITYNG 218
P R + IL ++ VK G+ L+G GKST L+ L LD G ++ +G
Sbjct: 398 PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD------GMVSIDG 451
Query: 219 YKLDEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
+ +V+ I P L FA I E R
Sbjct: 452 QDIRTINVRYLREIIGVVSQE-PVL------------------FATTIA-----ENIRYG 487
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG--VSGGQKKRVT 336
R +D KA K + + D+++K L +T+VG RG +SGGQK+R+
Sbjct: 488 REDVTMDEIEKAV-----KEANAYDFIMK---LPHQFDTLVGE---RGAQLSGGQKQRIA 536
Query: 337 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMA 383
+V K L +DE ++ LD+ + +V+ + + TI++A
Sbjct: 537 IARALVRNPKILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIA 582
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N++ G + +VG SG+GK+TL ++ YI G + I G+ + +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLVELDS 965
R G V Q+++ + ++ + + + K + + H+F+ E L
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LRE 133
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ +VG G+ GLS QR+R+ IA LV NP I+ D+ TS LD + ++MR + + +
Sbjct: 134 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNM-HKI 191
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
GRTV+ H+ S + D +++M++ G+++ GK
Sbjct: 192 CKGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 226
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 104/268 (38%), Gaps = 50/268 (18%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYN 217
F+ K S IL++++ +K G + ++G SGKSTL KL + ++G + +
Sbjct: 15 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRFYIPENGQVLID 69
Query: 218 GYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G+ L D ++R + Q DN + ++ + A
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA---------------------- 106
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P ++ + A+ + G +S L T+VG + G+SGGQ++R
Sbjct: 107 ----NPGMSVEKVIYAAKLAGAHDFISE--------LREGYNTIVG-EQGAGLSGGQRQR 153
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXX 394
+ +V K L D+ ++ LD + I++ + I+ L T
Sbjct: 154 IAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKN 209
Query: 395 XXXXXXXSEGHLVYQGPRAEVLEFFESL 422
+G +V QG E+L ESL
Sbjct: 210 ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 23/218 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N++ G + +VG +G+GK+TL ++ YI G + I G+ + +
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 75
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLVELDS 965
R G V Q+++ + ++ + + + K + + H+F+ E L
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LRE 129
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ +VG G+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 130 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 187
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
GRTV+ H+ S + D +++M++ G+++ GK
Sbjct: 188 CKGRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGK 222
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 50/268 (18%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYN 217
F+ K S IL++++ +K G + ++G SGKSTL KL + ++G + +
Sbjct: 11 FRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLT-----KLIQRFYIPENGQVLID 65
Query: 218 GYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G+ L D ++R + Q DN + ++ + A
Sbjct: 66 GHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA---------------------- 102
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P ++ + A+ + G +S L T+VG + G+SGGQ++R
Sbjct: 103 ----NPGMSVEKVIYAAKLAGAHDFISE--------LREGYNTIVG-EQGAGLSGGQRQR 149
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXX 394
+ +V K L DE ++ LD + I++ + I+ L T
Sbjct: 150 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL----STVKN 205
Query: 395 XXXXXXXSEGHLVYQGPRAEVLEFFESL 422
+G +V QG E+L ESL
Sbjct: 206 ADRIIVMEKGKIVEQGKHKELLSEPESL 233
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 126/285 (44%), Gaps = 47/285 (16%)
Query: 781 RKSQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNY-YVDMP 839
R S + ID EN + K++ E+ P +G L FQ + F NV++ Y D
Sbjct: 17 RGSHMFID--MENMFDLLKEETEVK--DLPGAGP-----LRFQKGRIEFENVHFSYAD-- 65
Query: 840 QAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 899
+ L +VS PG ALVG SGAGK+T++ +L + G I+
Sbjct: 66 -----------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIR 112
Query: 900 ISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
I G Q T A + ++ PQ TV + + N+R + + N +EV
Sbjct: 113 IDGQDISQVTQASLRSHIGV----VPQDTVLFNDTIADNIRYGRVTAGN------DEVEA 162
Query: 960 LVELDSLRDALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ + DA++ FP G G LS +++R+ IA ++ P II +DE TS LD
Sbjct: 163 AAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 222
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ ++ V RT + H+ S + D++L++K G
Sbjct: 223 TSNERAIQASLAK-VCANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 82/202 (40%), Gaps = 40/202 (19%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRT 229
L DVS V PG+ L+GP +GKST+L L D S SG I +G + Q T
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDIS----QVT 122
Query: 230 SAYISQTDNHIPELTV--RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAF 287
A + +P+ TV +T R+ G ND E++A
Sbjct: 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAG-----ND--------------EVEAA 163
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347
+A+ + + Y T VG ++ +SGG+K+RV I+
Sbjct: 164 AQAAGIHDAIMAFPEGY-----------RTQVGERGLK-LSGGEKQRVAIARTILKAPGI 211
Query: 348 LFMDEISTGLDSSTTFQIVKCL 369
+ +DE ++ LD+S I L
Sbjct: 212 ILLDEATSALDTSNERAIQASL 233
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/232 (24%), Positives = 109/232 (46%), Gaps = 23/232 (9%)
Query: 836 VDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA--GRKTGG- 892
+ + ++ + E+ + L NV+ G +++G SG+GK+T+++++ + T G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 893 -YIEGDIKISGYPKEQSTFARIS--GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ 949
YI+ +IK + ++ T R G+V Q P +T E++ + +S +
Sbjct: 62 VYID-NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
R + E +++ EL+ + LS Q++R+ IA L NP II D+PT L
Sbjct: 121 RRKRALECLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 1010 DARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060
D++ +M+ ++ + G+TVV H ++ F G R+IY
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS---GNI 214
+ +K + L +V+ +K G ++GP SGKST +L + G LD + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKPTEGEVYIDNI 67
Query: 215 TYNGYKLDEFHVQRTS--AYISQTDNHIPELTVRETFDFAA--RWQGANEGFAAYINDLN 270
N DE R ++ Q N IP LT E + +++GA G
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG--------- 118
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330
+ER +K ++ LK+ L E N +SGG
Sbjct: 119 ---EER-------------------RKRALE---CLKMAEL----EERFANHKPNQLSGG 149
Query: 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
Q++RV + + D+ + LDS T +I++ L+ + T+++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 19/162 (11%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQSTFA 911
L+N++ G AL+G SG+GK+TL+ +AG + T G I D K ++ P +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD---- 74
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLS--KEVSKNQRHEFVEEVMRLVELDSLRDA 969
R G V QN P +TV +++ F LR + +E+ K R EV +++ +D L
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR-----EVAKMLHIDKL--- 126
Query: 970 LVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1011
L +P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 127 LNRYPWQ--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 44/215 (20%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
+ T LN+++ +K G LLGP SGKSTLL +AG + SG I ++ + E
Sbjct: 15 NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELP 71
Query: 226 VQ-RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEI 284
+ R + Q P +TV + F + A P EI
Sbjct: 72 PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA---------------------PREEI 110
Query: 285 DAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGP 344
D ++ V K+L +D N +SGGQ++RV +V
Sbjct: 111 DKKVRE--------------VAKMLHIDKLL-----NRYPWQLSGGQQQRVAIARALVKE 151
Query: 345 RKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDAT 379
+ L +DE + LD+ ++ L+ ++ T
Sbjct: 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGIT 186
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 23/232 (9%)
Query: 836 VDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA--GRKTGG- 892
V + ++ + E+ + L NV+ G +++G SG+GK+T+++++ + T G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 893 -YIEGDIKISGYPKEQSTFARIS--GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ 949
YI+ +IK + ++ T R G+V Q P +T E++ + +S +
Sbjct: 62 VYID-NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
R + E +++ EL+ + LS Q++R+ IA L NP II D+PT L
Sbjct: 121 RRKRALECLKMAELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 1010 DARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060
D++ +M+ ++ + G+TVV H ++ F G R+IY
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 54/232 (23%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS---GNI 214
+ +K + L +V+ +K G ++GP SGKST +L + G LD + NI
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKPTEGEVYIDNI 67
Query: 215 TYNGYKLDEFHVQRTS--AYISQTDNHIPELTVRETFDFAA--RWQGANEGFAAYINDLN 270
N DE R ++ Q N IP LT E + +++GA G
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG--------- 118
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330
+ER +K ++ LK+ L E N +SGG
Sbjct: 119 ---EER-------------------RKRALE---CLKMAEL----EERFANHKPNQLSGG 149
Query: 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
Q++RV + + D+ + LDS T +I++ L+ + T+++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N++ G + +VG SG+GK+TL ++ YI G + I G+ + +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 73
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLVELDS 965
R G V Q+++ + ++ + + + K + + H+F+ E L
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LRE 127
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ +VG G+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 128 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 185
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
GRTV+ I + + D +++M++ G+++ GK
Sbjct: 186 CKGRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQGK 220
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 50/268 (18%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYN 217
F+ K S IL++++ +K G + ++G SGKSTL KL + ++G + +
Sbjct: 9 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRFYIPENGQVLID 63
Query: 218 GYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G+ L D ++R + Q DN + ++ + A
Sbjct: 64 GHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA---------------------- 100
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P ++ + A+ + G +S L T+VG + G+SGGQ++R
Sbjct: 101 ----NPGMSVEKVIYAAKLAGAHDFISE--------LREGYNTIVG-EQGAGLSGGQRQR 147
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXX 394
+ +V K L DE ++ LD + I++ + I+ A L T
Sbjct: 148 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARL----STVKN 203
Query: 395 XXXXXXXSEGHLVYQGPRAEVLEFFESL 422
+G +V QG E+L ESL
Sbjct: 204 ADRIIVMEKGKIVEQGKHKELLSEPESL 231
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 908
+L N++ G + +VG SG+GK+TL ++ YI G + I G+ + +
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPENGQVLIDGHDLALADPN 79
Query: 909 TFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ---RHEFVEEVMRLVELDS 965
R G V Q+++ + ++ + + + K + + H+F+ E L
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISE------LRE 133
Query: 966 LRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025
+ +VG G+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + + +
Sbjct: 134 GYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM-HKI 191
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
GRTV+ I + + D +++M++ G+++ GK
Sbjct: 192 CKGRTVI--IIAARLSTVKNADRIIVMEK-GKIVEQGK 226
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 50/268 (18%)
Query: 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS--LKKSGNITYN 217
F+ K S IL++++ +K G + ++G SGKSTL KL + ++G + +
Sbjct: 15 FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-----KLIQRFYIPENGQVLID 69
Query: 218 GYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEK 274
G+ L D ++R + Q DN + ++ + A
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLA---------------------- 106
Query: 275 ERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
P ++ + A+ + G +S L T+VG + G+SGGQ++R
Sbjct: 107 ----NPGMSVEKVIYAAKLAGAHDFISE--------LREGYNTIVG-EQGAGLSGGQRQR 153
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXX 394
+ +V K L DE ++ LD + I++ + I+ A L T
Sbjct: 154 IAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAARL----STVKN 209
Query: 395 XXXXXXXSEGHLVYQGPRAEVLEFFESL 422
+G +V QG E+L ESL
Sbjct: 210 ADRIIVMEKGKIVEQGKHKELLSEPESL 237
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 19/205 (9%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARIS-GYVEQN- 920
G +TA++G +G GK+TL G + + G I D K Y ++ R S G V Q+
Sbjct: 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP 93
Query: 921 DIHSPQVTVEESLWFSA-NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGL 979
D +V + + F A N++L ++ + + V+ ++ ++ L+D + L
Sbjct: 94 DNQLFSASVYQDVSFGAVNMKLPEDEIRKR----VDNALKRTGIEHLKDK-----PTHCL 144
Query: 980 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQP 1038
S Q+KR+ IA LV P ++ +DEPT+GLD + +M+ V + G T++ H
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH-- 202
Query: 1039 SIDIFEAF-DELLLMKRGGRVIYGG 1062
IDI + D + +MK GRVI G
Sbjct: 203 DIDIVPLYCDNVFVMKE-GRVILQG 226
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 67/277 (24%), Positives = 101/277 (36%), Gaps = 57/277 (20%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE-----FHVQRTSA 231
+K G +T +LG GKSTL G L S SG I ++ +D ++ +
Sbjct: 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIG 87
Query: 232 YISQT-DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKA 290
+ Q DN + +V + F A +N E IR
Sbjct: 88 IVFQDPDNQLFSASVYQDVSFGA---------------VNMKLPEDEIRKR--------- 123
Query: 291 SSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFM 350
D LK G++ + +S GQKKRV ++V K L +
Sbjct: 124 -----------VDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLIL 167
Query: 351 DEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHLVYQG 410
DE + GLD +I+K L ++ TI++A EG ++ QG
Sbjct: 168 DEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA-THDIDIVPLYCDNVFVMKEGRVILQG 226
Query: 411 PRAEVL---EFFESLGFQLPPRKGVADFLQEVTSKKD 444
EV E + +L PR G L E+ +KD
Sbjct: 227 NPKEVFAEKEVIRKVNLRL-PRIG---HLMEILKEKD 259
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 845 QGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKIS 901
+G P +K + L NVS V + G + G++G+GK+TL+ ++AG IE GD+
Sbjct: 16 RGTPLEK-KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYD 69
Query: 902 GYPKEQSTFARISGYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
G K+ R G Q D + +E + N ++ V++ M
Sbjct: 70 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP-----LVKKAME 124
Query: 960 LV--ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
V + DS +D + F LS +++R+ IA +V P I+ +DEP GLD +
Sbjct: 125 FVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 179
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
+R V G+TV+ H + D ++++++G +V G ++
Sbjct: 180 LRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRM 225
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 45/252 (17%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRT 229
L +VS V+ G L+ G SGKSTLL +AG ++ + SG++ Y+G + + ++R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 81
Query: 230 SAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMK 289
Q + FD A FA +N P + +K
Sbjct: 82 IGIAFQYPED--QFFAERVFDEVA--------FAV-----------KNFYPDRDPVPLVK 120
Query: 290 ASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLF 349
+ ++ +GLD S + + +SGG+K+RV +IV L
Sbjct: 121 KA--------------MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILI 163
Query: 350 MDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSE-GHLVY 408
+DE GLD +++ + + + T++ L+ ET E G V+
Sbjct: 164 LDEPLVGLDREGKTDLLRIVEKW-KTLGKTVI--LISHDIETVINHVDRVVVLEKGKKVF 220
Query: 409 QGPRAEVLEFFE 420
G R E LE ++
Sbjct: 221 DGTRMEFLEKYD 232
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 24/227 (10%)
Query: 845 QGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKIS 901
+G P +K + L NVS V + G + G++G+GK+TL+ ++AG IE GD+
Sbjct: 14 RGTPLEK-KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYD 67
Query: 902 GYPKEQSTFARISGYVEQ--NDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMR 959
G K+ R G Q D + +E + N ++ V++ M
Sbjct: 68 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP-----LVKKAME 122
Query: 960 LV--ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1017
V + DS +D + F LS +++R+ IA +V P I+ +DEP GLD +
Sbjct: 123 FVGLDFDSFKDRVPFF-----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 177
Query: 1018 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
+R V G+TV+ H + D ++++++G +V G ++
Sbjct: 178 LRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRM 223
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 45/252 (17%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRT 229
L +VS V+ G L+ G SGKSTLL +AG ++ + SG++ Y+G + + ++R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRN 79
Query: 230 SAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMK 289
Q + FD A FA +N P + +K
Sbjct: 80 IGIAFQYPED--QFFAERVFDEVA--------FAV-----------KNFYPDRDPVPLVK 118
Query: 290 ASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLF 349
+ ++ +GLD S + + +SGG+K+RV +IV L
Sbjct: 119 KA--------------MEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILI 161
Query: 350 MDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSE-GHLVY 408
+DE GLD +++ + + + T++ L+ ET E G V+
Sbjct: 162 LDEPLVGLDREGKTDLLRIVEKW-KTLGKTVI--LISHDIETVINHVDRVVVLEKGKKVF 218
Query: 409 QGPRAEVLEFFE 420
G R E LE ++
Sbjct: 219 DGTRMEFLEKYD 230
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
Query: 836 VDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 895
+D+ Q +S G L++L ++ G + ++G SG+GK+T + L + + E
Sbjct: 4 IDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDE 57
Query: 896 GDIKISG--YPKEQSTFARIS---GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR 950
G+I I G + + ++ G V Q P +TV ++ + +V K R
Sbjct: 58 GEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPR 112
Query: 951 HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ + M L++ L+D +P S LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 113 EKAEAKAMELLDKVGLKDKAHAYPDS--LSGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
V+ ++ + G T+V H+ E D +L M GG +I GK
Sbjct: 171 PEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEGK 221
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 47/215 (21%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL---- 221
SL +L ++ ++ G + +++GP SGKST L L D G I +G L
Sbjct: 15 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKD 71
Query: 222 -DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRP 280
+ V+ + Q N P +TV LN NI
Sbjct: 72 TNLNKVREEVGMVFQRFNLFPHMTV-----------------------LN------NITL 102
Query: 281 SPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEM 340
+P MK +K +L +GL + + +SGGQ +RV
Sbjct: 103 AP-----MKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS-----LSGGQAQRVAIARA 152
Query: 341 IVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQ 375
+ K + DE ++ LD +++ ++ ++
Sbjct: 153 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 187
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
Query: 836 VDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 895
+D+ Q +S G L++L ++ G + ++G SG+GK+T + L + + E
Sbjct: 25 IDVHQLKKSFG----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDE 78
Query: 896 GDIKISG--YPKEQSTFARIS---GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR 950
G+I I G + + ++ G V Q P +TV ++ + +V K R
Sbjct: 79 GEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPR 133
Query: 951 HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
+ + M L++ L+D +P S LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 134 EKAEAKAMELLDKVGLKDKAHAYPDS--LSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
V+ ++ + G T+V H+ E D +L M GG +I GK
Sbjct: 192 PEMVGEVLSVMKQLANEGMTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEGK 242
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL---- 221
SL +L ++ ++ G + +++GP SGKST L L D G I +G L
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKD 92
Query: 222 -DEFHVQRTSAYISQTDNHIPELTVRETFDFA 252
+ V+ + Q N P +TV A
Sbjct: 93 TNLNKVREEVGMVFQRFNLFPHMTVLNNITLA 124
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 14/211 (6%)
Query: 863 SPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST--FARISGYVEQN 920
+ G ALVGSSG GK+T++ +L + ++G I I G F R + V
Sbjct: 442 NAGQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQ 499
Query: 921 DIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLS 980
+ T+EE++ +E+ + E+ ++ L + + LVG G+ LS
Sbjct: 500 EPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIK--TLPNGYNTLVGDRGTQ-LS 556
Query: 981 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1040
Q++R+ IA LV NP I+ +DE TS LDA + IV + + + GRT + H+ S
Sbjct: 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL-DKAAKGRTTIIIAHRLST 615
Query: 1041 DIFEAFDELLLMKRGGRVIYGGKLGVHSKTM 1071
I A +L++ + G+V+ ++G H M
Sbjct: 616 -IRNA--DLIISCKNGQVV---EVGDHRALM 640
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 848 PEK-KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEG-DI 898
PE+ ++++L +S PG ALVG SG GK+T++ D L G +I+G +I
Sbjct: 1087 PERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI---FIDGSEI 1143
Query: 899 KISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVM 958
K +S A +S D ++ E++ + + V+ Q VEE
Sbjct: 1144 KTLNPEHTRSQIAIVSQEPTLFD-----CSIAENIIYGLD---PSSVTMAQ----VEEAA 1191
Query: 959 RLVELDSLRDAL-VGFPGSSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
RL + + L GF G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 1251
Query: 1013 AAAIVMRTVRNTVDTGRTVVCTIHQ 1037
+ +V + + GRT + H+
Sbjct: 1252 SEKVVQEAL-DRAREGRTCIVIAHR 1275
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 44/214 (20%)
Query: 153 ILTGLRIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSG 212
I +R P+R + IL +S V+PG+ L+GP GKST ++AL + +L G
Sbjct: 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKST-VVALLERFYDTL--GG 1134
Query: 213 NITYNGYKLDEFHVQRTSAYISQTDNH--IPELTVRETFDFAARWQGANEGFAAYINDLN 270
I +G ++ + + T + I+ + + ++ E + A + +
Sbjct: 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT---MAQVEEAA 1191
Query: 271 RLEKERN-IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG--V 327
RL N I PE F ET VG+ RG +
Sbjct: 1192 RLANIHNFIAELPE--GF----------------------------ETRVGD---RGTQL 1218
Query: 328 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 361
SGGQK+R+ +V K L +DE ++ LD+ +
Sbjct: 1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 46/205 (22%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
P R + IL ++ V G+ L+G GKST++ L D LK G IT +G +
Sbjct: 426 PSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LK--GKITIDGVDV 482
Query: 222 DEFHVQ---RTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
+ +++ + A +SQ P L F I + L KE
Sbjct: 483 RDINLEFLRKNVAVVSQE----PAL------------------FNCTIEENISLGKEGIT 520
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG--VSGGQKKRVT 336
R E+ A K ++ ++ Y T+VG+ RG +SGGQK+R+
Sbjct: 521 RE--EMVAACKMANAEKFIKTLPNGY-----------NTLVGD---RGTQLSGGQKQRIA 564
Query: 337 TGEMIVGPRKTLFMDEISTGLDSST 361
+V K L +DE ++ LD+ +
Sbjct: 565 IARALVRNPKILLLDEATSALDAES 589
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 104/219 (47%), Gaps = 17/219 (7%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI-EGDIKISGYPKEQSTFA 911
+ VS G + L+G SG+GKTT++ ++AG R T G + G +++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
R G V QN +TV +++ F LR K V K++ V E++R + L+S +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSF--GLR-EKRVPKDEMDARVRELLRFMRLESYANR-- 141
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1030
FP LS Q++R+ +A L P ++ DEP + +D + + VR D G T
Sbjct: 142 -FPHE--LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSK 1069
V H + E D +L++ G +G V+ K
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVYEK 236
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 48/208 (23%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ-R 228
+ VS ++ G M LLGP SGK+T+L +AG L+ K G++ G ++ + Q R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPTK--GDVWIGGKRVTDLPPQKR 87
Query: 229 TSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFM 288
+ Q +TV + F R E+ + P E+DA +
Sbjct: 88 NVGLVFQNYALFQHMTVYDNVSFGLR--------------------EKRV-PKDEMDARV 126
Query: 289 KASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTL 348
+ +L+ + L+ + N +SGGQ++RV + + L
Sbjct: 127 RE--------------LLRFMRLESYA-----NRFPHELSGGQQQRVALARALAPRPQVL 167
Query: 349 FMDEISTGLDSSTTFQIVKCLRNFVHQM 376
DE +D+ QI + LR FV Q+
Sbjct: 168 LFDEPFAAIDT----QIRRELRTFVRQV 191
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
+Q+L ++ PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 909 TFARISGYVEQNDIHSPQVTV-EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + +H+ V +E L F + R + R +EE+ +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAH 136
Query: 968 DALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
D + GFP G +G LS QR+ + +A L+ P ++ +D+ TS LDA V
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQ 196
Query: 1019 RTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1056
R + + + RTV+ HQ S+ + E L LM+RGG
Sbjct: 197 RLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTL 196
P ++ +L ++ + PG++T L+GP SGKST+
Sbjct: 27 PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 27/236 (11%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907
P +++ L N++ G ALVG SG+GK+T+ ++ + EG I + G+ +
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLRE 409
Query: 908 STFARISGYVE--QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV---- 961
T A + V ++H TV ++ ++ ++E S+ Q +EE R+
Sbjct: 410 YTLASLRNQVALVSQNVHLFNDTVANNIAYAR----TEEYSREQ----IEEAARMAYAMD 461
Query: 962 ---ELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
++D+ D ++G G LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 462 FINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI- 519
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDY 1074
+ + + RT + H+ S E DE+++++ G V + G HS+ + +
Sbjct: 520 QAALDELQKNRTSLVIAHRLS--TIEQADEIVVVEDGIIV----ERGTHSELLAQH 569
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 45/250 (18%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HV 226
L +++ + G+ L+G SGKST+ + D G+I +G+ L E+ +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASL 415
Query: 227 QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDA 286
+ A +SQ + H+ TV AN A + +R + E R + +D
Sbjct: 416 RNQVALVSQ-NVHLFNDTV------------ANNIAYARTEEYSREQIEEAARMAYAMDF 462
Query: 287 FMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK 346
K + GLD T++G + + +SGGQ++R+ ++
Sbjct: 463 INKMDN-----------------GLD----TIIGENGVL-LSGGQRQRIAIARALLRDSP 500
Query: 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHL 406
L +DE ++ LD+ + I L + ++ L T +G +
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEQADEIVVVEDGII 556
Query: 407 VYQGPRAEVL 416
V +G +E+L
Sbjct: 557 VERGTHSELL 566
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 9/194 (4%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPKEQ 907
+ +Q L+NVS G + ++G+SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + ++ Q + S N+ L E+ + E V L+ L L
Sbjct: 95 LSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1026
D +P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1027 TGRTVVCTIHQPSI 1040
G T++ H+ +
Sbjct: 213 LGLTILLITHEXDV 226
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNIT 215
++F ++ LN+VS V G++ ++G +GKSTL+ + + L++ G++
Sbjct: 32 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-----NLLERPTEGSVL 86
Query: 216 YNGYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRL 272
+G +L E + + I H L+ R F A L
Sbjct: 87 VDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVA------------------L 128
Query: 273 EKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQK 332
E + P E+ K V+ +L ++GL ++ N +SGGQK
Sbjct: 129 PLELDNTPKDEV------------KRRVTE--LLSLVGLGDKHDSYPSN-----LSGGQK 169
Query: 333 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+RV + K L D+ ++ LD +TT I++ L++ ++ TIL+
Sbjct: 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 11/211 (5%)
Query: 848 PEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 907
P + + L N++ G ALVG SG+GK+T+ ++ + EG+I + G+ +
Sbjct: 352 PGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLRE 409
Query: 908 STFARISGYVE--QNDIHSPQVTVEESLWFSANLRLSKE-VSKNQRHEFVEEVMRLVELD 964
T A + V ++H TV ++ ++ + S+E + + R + + + ++D
Sbjct: 410 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFIN--KMD 467
Query: 965 SLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1024
+ D ++G G LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 468 NGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DE 525
Query: 1025 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+ RT + H+ S E DE+++++ G
Sbjct: 526 LQKNRTSLVIAHRLS--TIEKADEIVVVEDG 554
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 97/251 (38%), Gaps = 45/251 (17%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HV 226
L +++ + G+ L+G SGKST+ + D G I +G+ L E+ +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGEILMDGHDLREYTLASL 415
Query: 227 QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDA 286
+ A +SQ + H+ TV +A Q + E + E R + +D
Sbjct: 416 RNQVALVSQ-NVHLFNDTVANNIAYARTEQYSRE------------QIEEAARMAYAMDF 462
Query: 287 FMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK 346
K + GLD TV+G + + +SGGQ++R+ ++
Sbjct: 463 INKMDN-----------------GLD----TVIGENGVL-LSGGQRQRIAIARALLRDSP 500
Query: 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHL 406
L +DE ++ LD+ + I L + ++ L T +G +
Sbjct: 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL----STIEKADEIVVVEDGVI 556
Query: 407 VYQGPRAEVLE 417
V +G ++LE
Sbjct: 557 VERGTHNDLLE 567
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRK--TGGYIE-GDIKISGYPKEQSTFARISGYVEQND 921
G L+G SG GKTT + ++AG + T G I GD ++ P + + V Q+
Sbjct: 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS----MVFQSY 92
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
P +TV E++ F ++ + ++R + E++++ EL L +P LS
Sbjct: 93 AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPAQ--LSG 144
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1041
QR+R+ +A +V P ++ MDEP S LDA+ + ++ + + ++
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204
Query: 1042 IFEAFDELLLMKRG 1055
D + +M RG
Sbjct: 205 AMTMGDRIAVMNRG 218
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 62/226 (27%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
+ T +N ++ +K G +LLGP GK+T L +AG + + G I +
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFG-------- 71
Query: 226 VQRTSAYISQTDNHI----------PELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
R Y+ D +I P +TV E F + +
Sbjct: 72 -DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF----------------- 113
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
P EID ++ ++ +L + N +SGGQ++RV
Sbjct: 114 ----PKDEIDKRVRWAA-------------------ELLQIEELLNRYPAQLSGGQRQRV 150
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
IV L MDE + LD+ + ++ ++ T +
Sbjct: 151 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 23/219 (10%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLA--GRKTGG--YIEGDIKISGYP 904
E+ + L NV+ G ++ G SG+GK+T ++++ + T G YI+ +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID-NIKTNDLD 73
Query: 905 KEQSTFARIS--GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE 962
++ T R G+V Q P +T E++ + S +R + E ++ E
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAE 133
Query: 963 LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
L+ + LS Q++R+ IA L NP II DEPT LD++ + + ++
Sbjct: 134 LEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLK 189
Query: 1023 N-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIY 1060
+ G+TVV H ++ F G R+IY
Sbjct: 190 KLNEEDGKTVVVVTHDINVARF-----------GERIIY 217
Score = 38.5 bits (88), Expect = 0.029, Method: Composition-based stats.
Identities = 55/232 (23%), Positives = 87/232 (37%), Gaps = 46/232 (19%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKS---GNI 214
+ +K + L +V+ +K G + GP SGKST L + G LD + NI
Sbjct: 9 KTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKST-XLNIIGCLDKPTEGEVYIDNI 67
Query: 215 TYNGYKLDEFHVQRTS--AYISQTDNHIPELTVRETFDFAA--RWQGANEGFAAYINDLN 270
N DE R ++ Q N IP LT E + +++GA G
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSG--------- 118
Query: 271 RLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGG 330
+ER +K ++ LK L E N +SGG
Sbjct: 119 ---EER-------------------RKRALE---CLKXAEL----EERFANHKPNQLSGG 149
Query: 331 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
Q++RV + + DE + LDS T +I + L+ + T+++
Sbjct: 150 QQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVV 201
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 11/215 (5%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKEQ 907
+L V+ V G + AL+G +GAGK+TL +LAG G+I + G P E+
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + Q + P VT+ L + +L +EV EF +V + +EL
Sbjct: 78 ARKGLFLAF--QYPVEVPGVTIANFLRLALQAKLGREVGV---AEFWTKVKKALELLDWD 132
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
++ + + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 133 ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP 192
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGG 1062
+ H I + D++ +M G V GG
Sbjct: 193 NFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 40/195 (20%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF--- 224
TIL V+ VV G + L+GP +GKSTL LAG + ++++ G I +G + E
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVER-GEILLDGENILELSPD 75
Query: 225 HVQRTSAYIS-QTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
R +++ Q +P +T+ A + + E
Sbjct: 76 ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGRE----------------------- 112
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVG 343
VG + L++L D E+ + + G SGG+KKR +++V
Sbjct: 113 ---------VGVAEFWTKVKKALELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLLVL 160
Query: 344 PRKTLFMDEISTGLD 358
+DE +GLD
Sbjct: 161 EPTYAVLDETDSGLD 175
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRK--TGGYIE-GDIKISGYPKEQSTFARISGYVEQND 921
G L+G SG GKTT + ++AG + T G I GD ++ P + + V Q+
Sbjct: 38 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS----MVFQSY 93
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
P +TV E++ F ++ + ++R + E++++ EL L +P LS
Sbjct: 94 AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL------LNRYPAQ--LSG 145
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1041
QR+R+ +A +V P ++ MDEP S LDA+ + ++ + + ++
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 205
Query: 1042 IFEAFDELLLMKRG 1055
D + +M RG
Sbjct: 206 AMTMGDRIAVMNRG 219
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 79/226 (34%), Gaps = 62/226 (27%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
+ T +N ++ +K G +LLGP GK+T L +AG + + G I +
Sbjct: 24 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFG-------- 72
Query: 226 VQRTSAYISQTDNHI----------PELTVRETFDFAARWQGANEGFAAYINDLNRLEKE 275
R Y+ D +I P +TV E F + +
Sbjct: 73 -DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF----------------- 114
Query: 276 RNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRV 335
P EID ++ ++ +L + N +SGGQ++RV
Sbjct: 115 ----PKDEIDKRVRWAA-------------------ELLQIEELLNRYPAQLSGGQRQRV 151
Query: 336 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
IV L MDE + LD+ + ++ ++ T +
Sbjct: 152 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST---FARISGYVEQND 921
G +TALVG SG+GK+T++ +L + G I + G+ Q G V Q
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP------- 974
I ++ E++ + A+ + EE+ R+ E+ + + FP
Sbjct: 428 ILF-SCSIAENIAYGAD---------DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 975 GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
G G LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVL 536
Query: 1033 CTIHQPS 1039
H+ S
Sbjct: 537 VIAHRLS 543
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 47/215 (21%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
P R + I D S + G +T L+GP SGKST+L L D + SG I+ +G+ +
Sbjct: 352 PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDI 408
Query: 222 DEFH---VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERN- 277
+ + ++ +SQ + + ++ E + GA++ + ++ R+ + N
Sbjct: 409 RQLNPVWLRSKIGTVSQ-EPILFSCSIAENIAY-----GADDPSSVTAEEIQRVAEVANA 462
Query: 278 ---IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKR 334
IR P+ G + TVVG + +SGGQK+R
Sbjct: 463 VAFIRNFPQ--------------------------GFN----TVVGEKGVL-LSGGQKQR 491
Query: 335 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCL 369
+ ++ K L +DE ++ LD+ + + + L
Sbjct: 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEAL 526
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST---FARISGYVEQND 921
G +TALVG SG+GK+T++ +L + G I + G+ Q G V Q
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP------- 974
I ++ E++ + A+ + EE+ R+ E+ + + FP
Sbjct: 459 ILF-SCSIAENIAYGAD---------DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 975 GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
G G LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +D GRTV+
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVL 567
Query: 1033 CTIHQPS 1039
H S
Sbjct: 568 VIAHHLS 574
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 39/211 (18%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
P R + I D S + G +T L+GP SGKST+L L D + SG I+ +G+ +
Sbjct: 383 PARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDI 439
Query: 222 DEFH---VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
+ + ++ +SQ + + ++ E + GA++ + ++ R+ + N
Sbjct: 440 RQLNPVWLRSKIGTVSQ-EPILFSCSIAENIAY-----GADDPSSVTAEEIQRVAEVANA 493
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
AF++ G TVVG + +SGGQK+R+
Sbjct: 494 V------AFIRNFPQG--------------------FNTVVGEKGVL-LSGGQKQRIAIA 526
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCL 369
++ K L +DE ++ LD+ + + + L
Sbjct: 527 RALLKNPKILLLDEATSALDAENEYLVQEAL 557
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 22/248 (8%)
Query: 822 FQPLAMTFHNVNYYVDMPQAMRSQGIPEK-KLQLLSNVSGVFSPGVLTALVGSSGAGKTT 880
+ ++T H + V++ + + P++ + L +++ G ALVG +G+GK+T
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 881 LMDVLAGRKTGGYIEGDIKISGY---PKEQSTFARISGYVEQNDIHSPQVTVEESLWFSA 937
+ +L EGDIKI G +++ I G V Q+ I + T++ ++ +
Sbjct: 62 IAKLLYRFYDA---EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYGK 117
Query: 938 NLRLSKEVSKN----QRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVEL 993
+EV K Q ++F+E L D +VG G LS +R+R+ IA L
Sbjct: 118 LDATDEEVIKATKSAQLYDFIEA------LPKKWDTIVGNKGMK-LSGGERQRIAIARCL 170
Query: 994 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053
+ +P I+ DE TS LD++ + + V + + RT++ H+ S + + ++L+
Sbjct: 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIIIAHRLS--TISSAESIILLN 227
Query: 1054 RGGRVIYG 1061
+G V G
Sbjct: 228 KGKIVEKG 235
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 316 ETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQ 375
+T+VGN ++ +SGG+++R+ ++ K + DE ++ LDS T + K + +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 376 MDATILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVLEF 418
I+ L T ++G +V +G ++L+
Sbjct: 205 RTLIIIAHRLS----TISSAESIILLNKGKIVEKGTHKDLLKL 243
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 11/213 (5%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPKEQ 907
+ +Q L+NVS G + ++G+SGAGK+TL+ L R T EG + + G
Sbjct: 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 71
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + ++ Q + + S N+ L E+ + E V L+ L L
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 131
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1026
D +P S LS Q++R+ IA L +NP ++ DE TS LD ++ +++
Sbjct: 132 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
G T++ H+ +D+ + + + + G +I
Sbjct: 190 LGLTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 47/230 (20%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNIT 215
++F ++ LN+VS V G++ ++G +GKSTL+ + + L++ G++
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-----NLLERPTEGSVL 63
Query: 216 YNGYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRL 272
+G +L E + + I H L+ R F G A +L+
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF-----------GNVALPLELDNT 112
Query: 273 EKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQK 332
K+ R E+ + + +G K S ++ +SGGQK
Sbjct: 113 PKDEVKRRVTELLSLV---GLGDKHDSYPSN-----------------------LSGGQK 146
Query: 333 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+RV + K L DE ++ LD +TT I++ L++ ++ TIL+
Sbjct: 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 21/209 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFA 911
LS+VS G ALVG SG+GK+T+ ++ + G I + G+ +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSAN---LRLSKEVSKNQRH--EFVEEVMRLVELDSL 966
R V QN +H T+ ++ ++A R E + Q H EF+E + + +
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL----- 470
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
D ++G G+S LS QR+R+ IA L+ + ++ +DE TS LD + + + + +
Sbjct: 471 -DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL-DELQ 527
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+TV+ H+ S E DE+L++ G
Sbjct: 528 KNKTVLVIAHRLS--TIEQADEILVVDEG 554
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 45/250 (18%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEF---HV 226
L+ VS + G+ L+G SGKST+ D SG+I +G+ + ++ ++
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNL 415
Query: 227 QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDA 286
+R A +SQ + H+ T+ +AA + E + +E N+ P+
Sbjct: 416 RRHFALVSQ-NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM---PQ--- 468
Query: 287 FMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK 346
GLD TV+G + +SGGQ++RV ++
Sbjct: 469 -----------------------GLD----TVIGENGT-SLSGGQRQRVAIARALLRDAP 500
Query: 347 TLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHL 406
L +DE ++ LD+ + I L Q + T+L ++ T EG +
Sbjct: 501 VLILDEATSALDTESERAIQAALDEL--QKNKTVL--VIAHRLSTIEQADEILVVDEGEI 556
Query: 407 VYQGPRAEVL 416
+ +G A++L
Sbjct: 557 IERGRHADLL 566
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 40/232 (17%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
+Q+L ++ PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 909 TFARISGYVEQNDIHSPQVTV-EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + +H+ V +E L F + R + R +EE+ +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAH 136
Query: 968 DALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
D + GFP G +G LS QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 1019 RTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1056
R + + + RTV+ Q S+ + E L LM+RGG
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTL 196
P ++ +L ++ + PG++T L+GP SGKST+
Sbjct: 27 PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 11/213 (5%)
Query: 850 KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIEGDIKISGYPKEQ 907
+ +Q L+NVS G + ++G+SGAGK+TL+ L R T EG + + G
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTT 94
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + ++ Q + + S N+ L E+ + E V L+ L L
Sbjct: 95 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG 154
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1026
D +P S LS Q++R+ IA L +NP ++ D+ TS LD ++ +++
Sbjct: 155 DKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 1027 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVI 1059
G T++ H+ +D+ + + + + G +I
Sbjct: 213 LGLTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 47/230 (20%)
Query: 158 RIFKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK--SGNIT 215
++F ++ LN+VS V G++ ++G +GKSTL+ + + L++ G++
Sbjct: 32 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-----NLLERPTEGSVL 86
Query: 216 YNGYKL---DEFHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRL 272
+G +L E + + I H L+ R F G A +L+
Sbjct: 87 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF-----------GNVALPLELDNT 135
Query: 273 EKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQK 332
K+ R E+ + + +G K S ++ +SGGQK
Sbjct: 136 PKDEVKRRVTELLSLV---GLGDKHDSYPSN-----------------------LSGGQK 169
Query: 333 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
+RV + K L D+ ++ LD +TT I++ L++ ++ TIL+
Sbjct: 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 39/220 (17%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-------- 904
Q+L ++S P + A G SG GK+T+ +L + G+I I G P
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNISLEN 73
Query: 905 -KEQSTF-----ARISGYVEQNDIHSPQVT-VEESLWFSANLRLSKEVSKNQRHEFVEEV 957
+ Q F A ++G + +N + + +E LW +L ++ +N + EV
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133
Query: 958 MRLVELDSLRDALVGFPGSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
G G +S QR+RL IA + NP I+ +DE T+ LD+ + +
Sbjct: 134 -----------------GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 1016 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
+V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 177 MVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKG 213
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 41/211 (19%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH 225
S IL D+S +P + GP GKST+ L + +G IT +G +D
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNIS 70
Query: 226 VQR---TSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSP 282
++ ++SQ D+ I T+RE + +E DL ++
Sbjct: 71 LENWRSQIGFVSQ-DSAIMAGTIRENLTYGLEGDYTDE-------DLWQV---------- 112
Query: 283 EIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIV 342
+D S V ++T+ VG ++ +SGGQ++R+ +
Sbjct: 113 -LDLAFARSFVENMPDQLNTE---------------VGERGVK-ISGGQRQRLAIARAFL 155
Query: 343 GPRKTLFMDEISTGLDSSTTFQIVKCLRNFV 373
K L +DE + LDS + + K L + +
Sbjct: 156 RNPKILMLDEATASLDSESESMVQKALDSLM 186
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 40/232 (17%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 908
+Q+L ++ PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ- 85
Query: 909 TFARISGYVEQNDIHSPQVTV-EESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLR 967
+ + +H+ V +E L F + R + R +EE+ +
Sbjct: 86 --------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAH 136
Query: 968 DALVGFP-------GSSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1018
D + GFP G +G L+ QR+ + +A L+ P ++ +D TS LDA V
Sbjct: 137 DFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 1019 RTVRNTVD-TGRTVVCTIHQPSI-------------DIFEAFDELLLMKRGG 1056
R + + + RTV+ Q S+ + E L LM+RGG
Sbjct: 197 RLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTL 196
P ++ +L ++ + PG++T L+GP SGKST+
Sbjct: 27 PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 19/226 (8%)
Query: 838 MPQAMRSQGIPE--KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVL----AGRKTG 891
M + +R++ I + + ++L +S G +++G+SG+GK+TL+ +L A +
Sbjct: 1 MAEILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
Query: 892 GYIEGDIKISGYPKEQSTFA-RISGYVEQNDIHSPQVTVEESLWFSANLRLSK-EVSKNQ 949
++EG KE S R G+V Q P++T E++ L++ K + +
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKPKKEAKE 119
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
R E++ L EL L D L P LS +++R+ IA L P ++F DEPT L
Sbjct: 120 RGEYL-----LSEL-GLGDKLSRKPYE--LSGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 1010 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
D+ VM + G ++V H+ ++ E L MK G
Sbjct: 172 DSANTKRVMDIFLKINEGGTSIVMVTHER--ELAELTHRTLEMKDG 215
Score = 39.3 bits (90), Expect = 0.014, Method: Composition-based stats.
Identities = 53/206 (25%), Positives = 77/206 (37%), Gaps = 52/206 (25%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLK-----KSGNITYNGYKLDE 223
IL +S VK G ++G SGKSTLL L G LD+ + + + Y K
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 224 FHVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPE 283
R ++ Q IPELT E G + A KER
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA----------KERG------ 121
Query: 284 IDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRG---VSGGQKKRVTTGEM 340
+Y+L LGL G+ + R +SGG+++RV
Sbjct: 122 -------------------EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARA 154
Query: 341 IVGPRKTLFMDEISTGLDSSTTFQIV 366
+ LF DE + LDS+ T +++
Sbjct: 155 LANEPILLFADEPTGNLDSANTKRVM 180
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 18/193 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STF 910
+L +++ G A VG SG GK+TL++++ + G I I G+ + +
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--RFYDVTSGQILIDGHNIKDFLTGSL 413
Query: 911 ARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR----HEFVEEVMRLVELDSL 966
G V+Q++I TV+E++ +EV + + H+F+ + L
Sbjct: 414 RNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI------MNLPQG 466
Query: 967 RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1026
D VG G LS Q++RL+IA + NP I+ +DE TS LD + +I+ + + +
Sbjct: 467 YDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL-DVLS 524
Query: 1027 TGRTVVCTIHQPS 1039
RT + H+ S
Sbjct: 525 KDRTTLIVAHRLS 537
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 115/298 (38%), Gaps = 53/298 (17%)
Query: 123 FQNLKVVADVQTGSRALPTLVNATRDVFERILTGLRIFKPKRHSLTILNDVSGVVKPGRM 182
FQ + D++ G A P + R + + F+ + IL D++ ++ G
Sbjct: 315 FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVS-----FQYNDNEAPILKDINLSIEKGET 369
Query: 183 TLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ--RTSAYISQTDNHI 240
+G GKSTL+ + D + SG I +G+ + +F R + Q DN +
Sbjct: 370 VAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL 426
Query: 241 PELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSV 300
TV+E RP+ + ++A+ K +
Sbjct: 427 FSDTVKENILLG--------------------------RPTATDEEVVEAA-----KMAN 455
Query: 301 STDYVLKVLGLDLCSETVVGNDMIRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 358
+ D+++ L +T VG RGV SGGQK+R++ + + L +DE ++ LD
Sbjct: 456 AHDFIMN---LPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
Query: 359 SSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHLVYQGPRAEVL 416
+ I + L V D T L ++ T GH+V G E++
Sbjct: 510 LESESIIQEALD--VLSKDRTTL--IVAHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 19/199 (9%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRK--TGGYIEGDIKISGYPKEQSTFA----RISGYVE 918
G L+G SG GKTT + ++AG + + G I K+ P E+ F R V
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP-EKGIFVPPKDRDIAMVF 87
Query: 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978
Q+ P +TV +++ F LR K R E + V + EL L + L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLR------KVPRQEIDQRVREVAELLGLTELLNRKPRE-- 139
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIH 1036
LS QR+R+ + +V P + MDEP S LDA+ + MR + G T + H
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK-LRVRMRAELKKLQRQLGVTTIYVTH 198
Query: 1037 QPSIDIFEAFDELLLMKRG 1055
++ D + +M RG
Sbjct: 199 D-QVEAMTMGDRIAVMNRG 216
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 89/224 (39%), Gaps = 52/224 (23%)
Query: 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL---D 222
+T + ++S VK G +LLGP GK+T L +AG + S G I Y G KL
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQI-YIGDKLVADP 70
Query: 223 EFHV-----QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERN 277
E + R A + Q+ P +TV + F + +
Sbjct: 71 EKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV------------------- 111
Query: 278 IRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTT 337
P EID ++ V ++LGL T + N R +SGGQ++RV
Sbjct: 112 --PRQEIDQRVRE--------------VAELLGL-----TELLNRKPRELSGGQRQRVAL 150
Query: 338 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
G IV + MDE + LD+ ++ L+ Q+ T +
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 21/166 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+LS V+ PG L A++G +G+GK+TLM+++ + G +++ +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP--RLIDPERGRVEVDELDVRTVKLKDL 415
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
G++ PQ TV S NL+ +E + + +E++ ++ + D ++
Sbjct: 416 RGHISA----VPQETVLFSGTIKENLKWGREDATD------DEIVEAAKIAQIHDFIISL 465
Query: 974 P---------GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
P G S Q++RL+IA LV P ++ +D+ TS +D
Sbjct: 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 42/250 (16%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
+L+ V+ VKPG + +LG SGKSTL+ + +D + G + ++DE V+
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRV-----EVDELDVR- 408
Query: 229 TSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFM 288
+ + HI + +ET F+ + E + R D +
Sbjct: 409 -TVKLKDLRGHISAVP-QETVLFSGTIK----------------ENLKWGREDATDDEIV 450
Query: 289 KASSVGGKKHSVSTDYVLKV-LGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347
+A+ + + H D+++ + G D S G R SGGQK+R++ +V K
Sbjct: 451 EAAKIA-QIH----DFIISLPEGYD--SRVERGG---RNFSGGQKQRLSIARALVKKPKV 500
Query: 348 LFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHLV 407
L +D+ ++ +D T +I+ L+ + I+ Q P T EG +
Sbjct: 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT---QKIP-TALLADKILVLHEGKVA 556
Query: 408 YQGPRAEVLE 417
G E+LE
Sbjct: 557 GFGTHKELLE 566
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK----TGGYIE--GDIKISGYPKEQ 907
+L +S PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+++
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 908 STFARISGYVEQNDIHSPQVTVEESLWFSAN----LRLSKEVSKNQRHEFVEEVMRLVEL 963
+ + Q + P V+ + L + N R + + + + +EE + L+++
Sbjct: 76 AGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 133
Query: 964 --DSL-RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
D L R VGF G ++KR I V P + +DE SGLD A +V
Sbjct: 134 PEDLLTRSVNVGFSGG------EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 1021 VRNTVDTGRTVVCTIHQPSI 1040
V + D R+ + H I
Sbjct: 188 VNSLRDGKRSFIIVTHYQRI 207
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
IL +S V PG + ++GP SGKSTL LAG+ D + G + + G L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDL 67
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 30/255 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE----GDIKISGYPKEQST 909
L+++VS + G + A++G +GAGK+TL+ +L G + + E G S PK
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK---A 82
Query: 910 FARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSL--R 967
AR + Q + +V E + +Q + +++VM + +L R
Sbjct: 83 LARTRAVMRQYSELAFPFSVSEVIQMG-----RAPYGGSQDRQALQQVMAQTDCLALAQR 137
Query: 968 DALVGFPGSSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTV 1021
D V LS +++R+ +A L P +F+DEPTS LD +R +
Sbjct: 138 DYRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190
Query: 1022 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGV-HSKTMIDYFQALD 1079
R T V C +H ++ A D ++L+ +G V G V +++T+ ++QA
Sbjct: 191 RQLTRQEPLAVCCVLHDLNLAALYA-DRIMLLAQGKLVACGTPEEVLNAETLTQWYQADL 249
Query: 1080 GIPSIPSGYNPATWM 1094
G+ P P ++
Sbjct: 250 GVSRHPESALPQIYL 264
Score = 37.0 bits (84), Expect = 0.083, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS 207
++NDVS + G M ++GP +GKSTLL L G L S
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS 64
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 21/200 (10%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRK----TGGYIE--GDIKISGYPKEQ 907
+L +S PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+++
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 908 STFARISGYVEQNDIHSPQVT----VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVEL 963
+ + Q + P V+ ++ +L + R + + + + +EE + L+++
Sbjct: 95 AGEGIFMAF--QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 964 --DSL-RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1020
D L R VGF G ++KR I V P + +DE SGLD A +V
Sbjct: 153 PEDLLTRSVNVGFSGG------EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 1021 VRNTVDTGRTVVCTIHQPSI 1040
V + D R+ + H I
Sbjct: 207 VNSLRDGKRSFIIVTHYQRI 226
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
IL +S V PG + ++GP SGKSTL LAG+ D + G + + G L
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDL 86
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA-- 911
+L N+S SPG L+G +G+GK+TL+ EG+I+I G + T
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 912 -RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
+ G + Q + FS R K + N H +E+ ++ + LR +
Sbjct: 93 RKAFGVIPQ-----------KVFIFSGTFR--KNLDPNAAHSD-QEIWKVADEVGLRSVI 138
Query: 971 VGFP---------GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
FP G LS ++ + +A +++ I+ +DEP++ LD I+ RT+
Sbjct: 139 EQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198
Query: 1022 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053
+ ++C + I+ D+ L+++
Sbjct: 199 KQAFADCTVILC---EARIEAMLECDQFLVIE 227
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQR 228
IL ++S + PG+ LLG SGKSTLL A L++ G I +G D +++
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT----EGEIQIDGVSWDSITLEQ 91
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 38/201 (18%)
Query: 851 KLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI------------EG 896
K ++L +S G + L+G +GAGKTT + +++ + + G + E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86
Query: 897 DIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEE 956
IS P+E + + G E L F A S S ++ E VE
Sbjct: 87 RKLISYLPEEAGAYRNMQGI--------------EYLRFVAGFYAS---SSSEIEEMVER 129
Query: 957 VMRLVEL-DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1015
+ L + ++D + S S ++L IA L+ NP + +DEPTSGLD A
Sbjct: 130 ATEIAGLGEKIKDRV------STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 183
Query: 1016 IVMRTVRNTVDTGRTVVCTIH 1036
V + ++ G T++ + H
Sbjct: 184 EVRKILKQASQEGLTILVSSH 204
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 25/224 (11%)
Query: 849 EKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PK 905
+KK +L +++ PG ALVG +G+GKTT++++L + G I + G
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKI 422
Query: 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDS 965
++S+ G V Q+ I TV+E+L + + E ++E +L D
Sbjct: 423 KRSSLRSSIGIVLQDTILF-STTVKENLKYG---------NPGATDEEIKEAAKLTHSDH 472
Query: 966 LRDAL------VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019
L V LS QR+ L I +ANP I+ +DE TS +D + +
Sbjct: 473 FIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQA 532
Query: 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ ++ G+T + H+ ++ + D L+++ R G ++ GK
Sbjct: 533 AMWKLME-GKTSIIIAHR--LNTIKNAD-LIIVLRDGEIVEMGK 572
Score = 33.5 bits (75), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ- 227
+L D++ +KPG+ L+GP SGK+T++ L D G I +G + +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSS 426
Query: 228 -RTSAYISQTDNHIPELTVRETFDFA 252
R+S I D + TV+E +
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYG 452
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 29/186 (15%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GGYIEGDIK-ISGYPKEQSTFA 911
L N+S G ++G +GAGKT ++++AG G I D K ++ E+ A
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
+V QN P + V+++L F ++ K+ + V + R ++++ L D
Sbjct: 76 ----FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR------VLDTARDLKIEHLLDR-- 123
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
LS +++R+ +A LV NP I+ +DEP S LD R T + R +
Sbjct: 124 ---NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR-----------TQENAREM 169
Query: 1032 VCTIHQ 1037
+ +H+
Sbjct: 170 LSVLHK 175
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 50/250 (20%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRT 229
L+++S V+ G ++LGP +GK+ L +AG + SG I +G + + ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG---FHVPDSGRILLDGKDVTDLSPEKH 72
Query: 230 S-AYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNR-LEKERNIRPSPEIDAF 287
A++ Q + P + V++ +F R + I D R L+ R+++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMK--------KIKDPKRVLDTARDLK-------- 116
Query: 288 MKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKT 347
+++L L L SGG+++RV +V K
Sbjct: 117 --------------IEHLLDRNPLTL--------------SGGEQQRVALARALVTNPKI 148
Query: 348 LFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHLV 407
L +DE + LD T + L + +H+ + ++ + E +G L+
Sbjct: 149 LLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207
Query: 408 YQGPRAEVLE 417
G E+ E
Sbjct: 208 QVGKPEEIFE 217
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.4 bits (119), Expect = 7e-06, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 106/245 (43%), Gaps = 29/245 (11%)
Query: 837 DMPQAMRSQGIPE--KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
D + +R++ I + + + L VS + G +T ++G +G+GK+TL++V+ G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-- 60
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQ----VTVEESLWFSA---------NLRL 941
EG + A + Y +PQ +TV E+L +L
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY 120
Query: 942 SKEVSKNQRHEFVEEVMRLVE---LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPS 998
K + K + E VE+ +++E L L D G LS Q K + I L+ NP
Sbjct: 121 KKWIPKEE--EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPK 173
Query: 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+I MDEP +G+ A + V G T + H+ +DI + + L + G++
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQI 231
Query: 1059 IYGGK 1063
I G+
Sbjct: 232 IAEGR 236
Score = 33.9 bits (76), Expect = 0.72, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 48/199 (24%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK----SGNITYNGYKLDEFH 225
L+ VS V G +TL++GP SGKSTL+ + G L + + + +IT N + +H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT-NKEPAELYH 81
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRL-------EKERNI 278
+ QT + E+TV E G + LN L ++E +
Sbjct: 82 YGIVRTF--QTPQPLKEMTVLENLLIGEICPGESP--------LNSLFYKKWIPKEEEMV 131
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
+ +I F+K S + +K +SGGQ K V G
Sbjct: 132 EKAFKILEFLKLSHLYDRKAG--------------------------ELSGGQMKLVEIG 165
Query: 339 EMIVGPRKTLFMDEISTGL 357
++ K + MDE G+
Sbjct: 166 RALMTNPKMIVMDEPIAGV 184
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA----RISGYVE 918
G L+G SG GKTT + +AG T G I + + P E+ F R V
Sbjct: 32 GEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADP-EKGVFVPPKERDVAXVF 90
Query: 919 QNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSG 978
Q+ P TV +++ F LR + ++R V E + L EL + +
Sbjct: 91 QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRK--------PRE 142
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1012
LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 54/220 (24%), Positives = 83/220 (37%), Gaps = 46/220 (20%)
Query: 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV 226
+T + D+S +K G +LLGP GK+T L +AG L+ + I N E V
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPTRGQIYIEDNLVADPEKGV 77
Query: 227 -----QRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281
+R A + Q+ P TV + F + + P
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKV---------------------PK 116
Query: 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMI 341
EID ++ V + LGL T + N R +SGGQ++RV G I
Sbjct: 117 QEIDKRVRE--------------VAEXLGL-----TELLNRKPRELSGGQRQRVALGRAI 157
Query: 342 VGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATIL 381
+ K DE + LD+ + L+ Q+ T +
Sbjct: 158 IRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 837 DMPQAMRSQGIPE--KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
D + +R++ I + + + L VS G +T ++G +G+GK+TL++V+ G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD-- 60
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQ----VTVEESLWFSA---------NLRL 941
EG + A + Y +PQ +TV E+L +L
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFY 120
Query: 942 SKEVSKNQRHEFVEEVMRLVE---LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPS 998
K + K + E VE+ +++E L L D G LS Q K + I L+ NP
Sbjct: 121 KKWIPKEE--EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPK 173
Query: 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+I MDEP +G+ A + V G T + H+ +DI + + L + G++
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQI 231
Query: 1059 IYGGK 1063
I G+
Sbjct: 232 IAEGR 236
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK----SGNITYNGYKLDEFH 225
L+ VS V G +TL++GP SGKSTL+ + G L + + + +IT N + +H
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT-NKEPAELYH 81
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
+ QT + E+TV E N L E N SP
Sbjct: 82 YGIVRTF--QTPQPLKEMTVLE----------------------NLLIGEINPGESPLNS 117
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
F K ++ +L+ L L + G +SGGQ K V G ++
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNP 172
Query: 346 KTLFMDEISTGL 357
K + MDE G+
Sbjct: 173 KMIVMDEPIAGV 184
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 49.7 bits (117), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 99/203 (48%), Gaps = 28/203 (13%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-----YPKEQSTFARISGYVEQNDIHS 924
L+G +GAGK+ ++++AG G+++++G P E+ R G+V Q+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPER----RGIGFVPQDYALF 82
Query: 925 PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984
P ++V ++ + LR + V +++R + E + + L + A LS +R
Sbjct: 83 PHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LSGGER 132
Query: 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1044
+R+ +A LV P ++ +DEP S +D + ++M +R R I + D+ E
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF---VQREFDVPILHVTHDLIE 189
Query: 1045 A---FDELLLMKRGGRVIYGGKL 1064
A DE+ +M GR++ GKL
Sbjct: 190 AAMLADEVAVM-LNGRIVEKGKL 211
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 25/212 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKEQSTF 910
+L+++S PG + ++G+SG GKTTL+ LAG + G+I +SG + K +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 911 ARIS--GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
R GY+ Q + P +TV ++ + + + QR E + E+ + EL
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-- 134
Query: 969 ALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV--- 1025
+P LS Q++R +A L +P +I +DEP S LD + + R +R +
Sbjct: 135 ----YPHE--LSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAA 184
Query: 1026 --DTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1055
G++ V H + + D + +MK+G
Sbjct: 185 LRANGKSAVFVSHDRE-EALQYADRIAVMKQG 215
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHV-- 226
+LND+S + PG + ++G GK+TLL LAG SG I+ +G + +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG---FEQPDSGEISLSGKTIFSKNTNL 75
Query: 227 ---QRTSAYISQTDNHIPELTV 245
+R Y+ Q P LTV
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTV 97
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 39/259 (15%)
Query: 817 GMILPFQPLAMT-FHNVNY-YVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSS 874
G++ P + F +V++ Y + P + QG+ + PG +TALVG +
Sbjct: 4 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGL-----------TFTLRPGEVTALVGPN 52
Query: 875 GAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQSTFARISGYVEQNDIHSPQV---T 928
G+GK+T+ +L + TGG + D K + Y E R V Q PQV +
Sbjct: 53 GSGKSTVAALLQNLYQPTGGQLLLDGKPLPQY--EHRYLHRQVAAVGQ----EPQVFGRS 106
Query: 929 VEESLWFSANLRLSKE-----VSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQ 983
++E++ + + + E K+ H F+ L D V GS LS Q
Sbjct: 107 LQENIAYGLTQKPTMEEITAAAVKSGAHSFISG------LPQGYDTEVDEAGSQ-LSGGQ 159
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1043
R+ + +A L+ P ++ +D+ TS LDA + V + + + + V I Q + +
Sbjct: 160 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQ-HLSLV 218
Query: 1044 EAFDELLLMKRGGRVIYGG 1062
E D +L ++ GG + GG
Sbjct: 219 EQADHILFLE-GGAIREGG 236
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 41/224 (18%)
Query: 162 PKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKL 221
P R + +L ++ ++PG +T L+GP SGKST+ L + G + +G L
Sbjct: 25 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL 81
Query: 222 DEF---HVQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNI 278
++ ++ R A + Q P++ R E A + +E+
Sbjct: 82 PQYEHRYLHRQVAAVGQE----PQVFGRSL----------QENIAYGLTQKPTMEE---- 123
Query: 279 RPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTG 338
+ A++V HS + GL +T V ++ +SGGQ++ V
Sbjct: 124 ---------ITAAAVKSGAHSF-------ISGLPQGYDTEV-DEAGSQLSGGQRQAVALA 166
Query: 339 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILM 382
++ L +D+ ++ LD+++ Q+ + L + ++L+
Sbjct: 167 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL 210
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 24/233 (10%)
Query: 838 MPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 897
M M+ Q + E L +SG G + LVG +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 898 IKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANL--RLSKEVSKNQRHEFVE 955
I+ +G P E + +++ +H ++ +++ F+ + L+ R E +
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLD 1010
+V + LD D L QR RL V + ANP+ ++ +D+P + LD
Sbjct: 109 DVAGALALD---DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD 165
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ + + + G +V + H + + A LL +GG+++ G+
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASGR 216
Score = 38.1 bits (87), Expect = 0.035, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T L +SG V+ G + L+GP +GKSTLL +AG G+I + G L+ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 228 RTS---AYISQ 235
+ + AY+SQ
Sbjct: 70 KLALHRAYLSQ 80
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 29/245 (11%)
Query: 837 DMPQAMRSQGIPE--KKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 894
D + +R++ I + + + L VS + G +T ++G +G+GK+TL++V+ G
Sbjct: 3 DTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-- 60
Query: 895 EGDIKISGYPKEQSTFARISGYVEQNDIHSPQ----VTVEESLWFSA---------NLRL 941
EG + A + Y +PQ +TV E+L +L
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFY 120
Query: 942 SKEVSKNQRHEFVEEVMRLVE---LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPS 998
K + K + E VE+ +++E L L D G LS Q K + I L+ NP
Sbjct: 121 KKWIPKEE--EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPK 173
Query: 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRV 1058
+I MD+P +G+ A + V G T + H+ +DI + + L + G++
Sbjct: 174 MIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQI 231
Query: 1059 IYGGK 1063
I G+
Sbjct: 232 IAEGR 236
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 34/192 (17%)
Query: 170 LNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKK----SGNITYNGYKLDEFH 225
L+ VS V G +TL++GP SGKSTL+ + G L + + + +IT N + +H
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT-NKEPAELYH 81
Query: 226 VQRTSAYISQTDNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEID 285
+ QT + E+TV E N L E N SP
Sbjct: 82 YGIVRTF--QTPQPLKEMTVLE----------------------NLLIGEINPGESPLNS 117
Query: 286 AFMKASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPR 345
F K ++ +L+ L L + G +SGGQ K V G ++
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNP 172
Query: 346 KTLFMDEISTGL 357
K + MD+ G+
Sbjct: 173 KMIVMDQPIAGV 184
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 22/216 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L +SG G + LVG +GAGK+TL+ AG +G +G I+ +G P E + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 915 GYVEQNDIHSPQVTVEESLWFSANL--RLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
+H ++ +++ F+ + L+ R E + +V + LD D L
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLGR 122
Query: 973 FPGSSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQ 182
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
G +V + H + + A LL +GG+ + G+
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASGR 216
Score = 37.4 bits (85), Expect = 0.067, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T L +SG V+ G + L+GP +GKSTLL AG G+I + G L+ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG----KGSIQFAGQPLEAWSAT 69
Query: 228 RTS---AYISQ 235
+ + AY+SQ
Sbjct: 70 KLALHRAYLSQ 80
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 24/233 (10%)
Query: 838 MPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 897
M M+ Q + E L +SG G + LVG +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 898 IKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANL--RLSKEVSKNQRHEFVE 955
I+ +G P E + +++ +H ++ +++ F+ + L+ R E +
Sbjct: 56 IQFAGQPLEAWSATKLA-------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN 108
Query: 956 EVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLD 1010
+V + LD D L QR RL V + ANP+ ++ +D+P LD
Sbjct: 109 DVAGALALD---DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD 165
Query: 1011 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
+ + + + G +V + H + + A LL +GG+++ G+
Sbjct: 166 VAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASGR 216
Score = 38.1 bits (87), Expect = 0.037, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T L +SG V+ G + L+GP +GKSTLL +AG G+I + G L+ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 228 RTS---AYISQ 235
+ + AY+SQ
Sbjct: 70 KLALHRAYLSQ 80
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 17/191 (8%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHS 924
G + A++G +G GK+TL+D+L G I+G I++ QS G+V Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEVY-----QSI-----GFVPQFFSSP 78
Query: 925 PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQR 984
+V + + + ++ +K + H++ + L L+ A F + LS QR
Sbjct: 79 FAYSVLDIVLMGRSTHINT-FAKPKSHDYQVAMQALDYLNLTHLAKREF---TSLSGGQR 134
Query: 985 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIF 1043
+ + IA + + +I +DEPTS LD IV+ + + + TVV T HQP+ +
Sbjct: 135 QLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA 194
Query: 1044 EAFDELLLMKR 1054
A LLL K+
Sbjct: 195 IANKTLLLNKQ 205
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 301 STDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 360
S DY + + LD + T + +SGGQ++ + I K + +DE ++ LD +
Sbjct: 103 SHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 361 TTFQIVKCLRNFVHQMDATILMALLQP 387
++ L + + T++ QP
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 979 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.1 bits (113), Expect = 4e-05, Method: Composition-based stats.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 22/216 (10%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 914
L +SG G + LVG +GAGK+TL+ AG +G +G I+ +G P E + +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA 72
Query: 915 GYVEQNDIHSPQVTVEESLWFSANL--RLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
+H ++ +++ F+ + L+ R E + +V + LD D L
Sbjct: 73 -------LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD---DKLGR 122
Query: 973 FPGSSGLSTEQRKRLTIAVELV---ANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
QR RL V + ANP+ ++ +DEP + LD + + + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQ 182
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063
G +V + H + + A LL +GG+ + G+
Sbjct: 183 GLAIVXSSHDLNHTLRHAHRAWLL--KGGKXLASGR 216
Score = 37.0 bits (84), Expect = 0.071, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQ 227
T L +SG V+ G + L+GP +GKSTLL AG G+I + G L+ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG----KGSIQFAGQPLEAWSAT 69
Query: 228 RTS---AYISQ 235
+ + AY+SQ
Sbjct: 70 KLALHRAYLSQ 80
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 861 VFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI------EGDIKISGYPKEQSTFARIS 914
V G + +VG +G GK+T + +LAG+ +G I+ + Q+ F ++
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFP 974
E + PQ + + + ++ + + K +EEV++ +EL+++ + +
Sbjct: 103 N-GEIRPVVKPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI--- 156
Query: 975 GSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1034
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 157 --QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVV 214
Query: 1035 IHQPSI 1040
H ++
Sbjct: 215 EHDLAV 220
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 81/197 (41%), Gaps = 30/197 (15%)
Query: 860 GVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYV 917
G G + +VG +G GKTT + LAG T G IE D+ ++ P Q A G V
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKP--QYIKADYEGTV 364
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSK-EVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976
+ LSK + SK + + E+++ + + L D V
Sbjct: 365 YE--------------------LLSKIDASKLNSNFYKTELLKPLGIIDLYDREV----- 399
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1036
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ + +
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVE 459
Query: 1037 QPSIDIFEAFDELLLMK 1053
+ I D L + +
Sbjct: 460 HDVLXIDYVSDRLXVFE 476
Score = 30.0 bits (66), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 176 VVKPGRMTLLLGPPASGKSTLLLALAGKLDSSL 208
VVK G + ++GP +GKST + LAG+L +L
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNL 75
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 20/208 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
S + QN P E + S + + V K + E E++ + E +D +V
Sbjct: 102 S-FCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE--EDISKFAE----KDNIVLG 154
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ ++ + D++L++ G YG
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 19/209 (9%)
Query: 864 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQN--- 920
PG + LVG++G GK+T + +LAG++ D P+ Q G QN
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD----DPPEWQEIIKYFRGSELQNYFT 157
Query: 921 -----DIHS---PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVG 972
DI + PQ ++ E+ K + + E+V R +++ L + L
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 973 FPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
LS + +R I + V + DEP+S LD + + +R+ + + V+
Sbjct: 218 --DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 1033 CTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
C H + + + + + + G +YG
Sbjct: 276 CVEH--DLSVLDYLSDFVCIIYGVPSVYG 302
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L+ G FS + ++G +G GKTTL+ +LAG + K++ K Q +
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
G V Q L+F K + +F +V++ + +D + D V
Sbjct: 427 PGTVRQ-------------LFF------KKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-- 465
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1022
LS + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 466 ---QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 20/208 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
S + QN P E + S + + V K + E E++ + E +D +V
Sbjct: 102 S-FCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLE--EDISKFAE----KDNIVLG 154
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ ++ + D++L++ G YG
Sbjct: 215 VTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
S + Q P T++E++ F + + S + + E++ + E +D +V
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIVLG 137
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ ++ + D++L++ G YG
Sbjct: 198 VTSK--MEHLKKADKILILHEGSSYFYG 223
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 85
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 12/171 (7%)
Query: 865 GVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKEQSTFARISGYVEQND 921
G + L+G++GAGKTT + +AG + G I I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 922 IHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLST 981
I P++TV E+L A R KE K +E + L L++ L G+ LS
Sbjct: 92 IF-PELTVYENLXXGAYNRKDKEGIKRD----LEWIFSL--FPRLKERLKQLGGT--LSG 142
Query: 982 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1032
+++ L I L + P ++ DEP+ GL + V ++ G T++
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Score = 33.5 bits (75), Expect = 0.91, Method: Composition-based stats.
Identities = 58/248 (23%), Positives = 93/248 (37%), Gaps = 55/248 (22%)
Query: 177 VKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDE--FHV--QRTSAY 232
V G++ L+G +GK+T L A+AG + + + G I +NG + HV + A
Sbjct: 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRXGIAL 85
Query: 233 ISQTDNHIPELTVRETFDFAARWQGANEGFA---AYINDLNRLEKERNIRPSPEIDAFMK 289
+ + PELTV E A + EG +I L KER
Sbjct: 86 VPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKER------------- 132
Query: 290 ASSVGGKKHSVSTDYVLKVLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLF 349
LK LG L SGG+++ + G + K L
Sbjct: 133 ----------------LKQLGGTL--------------SGGEQQXLAIGRALXSRPKLLX 162
Query: 350 MDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETXXXXXXXXXXSEGHLVYQ 409
DE S GL ++ + ++ ++Q TIL+ + Q G +V +
Sbjct: 163 XDEPSLGLAPILVSEVFEVIQK-INQEGTTILL-VEQNALGALKVAHYGYVLETGQIVLE 220
Query: 410 GPRAEVLE 417
G +E+L+
Sbjct: 221 GKASELLD 228
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 28/198 (14%)
Query: 859 SGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKEQSTFARISGY 916
+G G + ++G +G GKTT +L G T G + + +I Y K Q F G
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFPNYDGT 346
Query: 917 VEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGS 976
V+Q ++ + + S W F EEV + + L L ++ V
Sbjct: 347 VQQYLENASKDALSTSSW------------------FFEEVTKRLNLHRLLESNV----- 383
Query: 977 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI- 1035
+ LS + ++L IA L + +D+P+S LD IV + ++ + V I
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID 443
Query: 1036 HQPSIDIFEAFDELLLMK 1053
H SI + A D +++ K
Sbjct: 444 HDLSIHDYIA-DRIIVFK 460
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 100/241 (41%), Gaps = 37/241 (15%)
Query: 867 LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISG---YVEQNDIH 923
+ ++G +G GKTT++ +LAG + + + K+ + R G Y +++
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYFKELY 82
Query: 924 SPQVTVEESLWF----------SANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
S ++ + + + + N L+K + ++ +EV L+ + +L +
Sbjct: 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK----DEVKELLNMTNLWNKDANI 138
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
GL +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 139 LSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIV 192
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTMIDYFQALDGIPSIPSGYNPATW 1093
H + + + +L+ + G +YG + + A GI + GY PA
Sbjct: 193 VDH--DLIVLDYLTDLIHIIYGESSVYG--------RVSKSYAARVGINNFLKGYLPAEN 242
Query: 1094 M 1094
M
Sbjct: 243 M 243
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
S + Q P T++E++ F + + S + + E++ + E +D +V
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIVLG 125
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
G LS QR R+++A + + + +D P LD + + + +T +
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ ++ + D++L++ G YG
Sbjct: 186 VTSK--MEHLKKADKILILHEGSSYFYG 211
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 73
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 36/214 (16%)
Query: 860 GVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYV 917
G G + +VG +G GKTT + +LAG T G +E D+ ++ P Q A G
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG-- 432
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
TV E L + +L+ K E+++ + + L D V
Sbjct: 433 ----------TVYELLSKIDSSKLNSNFYKT-------ELLKPLGIIDLYDRNV-----E 470
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Query: 1038 PSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTM 1071
+ I D L +++ G+ G H + +
Sbjct: 531 DVLMIDYVSDRL--------IVFEGEPGRHGRAL 556
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 861 VFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKEQSTFARIS 914
+ G++ +VG +G GKTT + +LAG+ E + I+ + Q+ F R+
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
E + PQ +R L K+V ++ +F E V L + L L
Sbjct: 173 NG-EIRPVVKPQYVDLLPKAVKGKVRELLKKV--DEVGKFEEVVKELELENVLDREL--- 226
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 227 ---HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYG--GKLGVHSK 1069
H + + + +++ V+YG G G+ SK
Sbjct: 284 VEH--DLAVLDYLSDVI------HVVYGEPGVYGIFSK 313
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 25/170 (14%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--------GYIEGDIKISGYPK 905
+L +S + G L G +GAGKTTL+++L + G G + GY
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKV---GYSA 92
Query: 906 EQSTFARISGYVEQNDIHSPQ-----VTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRL 960
E T + G+V + + Q + V S F + + + +++ R+E ++++L
Sbjct: 93 E--TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLLKL 148
Query: 961 VELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1010
V + +G+ LST +++R+ IA L P ++ +DEP +GLD
Sbjct: 149 VGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 914 S-GYVEQNDIHSPQVTVEESLWFSA--NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G +++N I V+ +E + S +L +++SK F E +D +
Sbjct: 111 MPGTIKENIIAG--VSYDEYRYRSVIKACQLEEDISK-----FAE-----------KDNI 152
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 153 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 212
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ + ++ + D++L++ G YG
Sbjct: 213 RILVTSK--MEHLKKADKILILHEGSSYFYG 241
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 80
Query: 914 S-GYVEQNDIHSPQVTVEESLWFSA--NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G +++N I V+ +E + S +L +++SK F E +D +
Sbjct: 81 MPGTIKENIIG---VSYDEYRYRSVIKACQLEEDISK-----FAE-----------KDNI 121
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V G LS QR R+++A + + + +D P LD + + + +T
Sbjct: 122 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 181
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ + ++ + D++L++ G YG
Sbjct: 182 RILVTSK--MEHLKKADKILILHEGSSYFYG 210
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 73
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 36/214 (16%)
Query: 860 GVFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYV 917
G G + +VG +G GKTT + +LAG T G +E D+ ++ P Q A G
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKP--QYIKAEYEG-- 418
Query: 918 EQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSS 977
TV E L + +L+ K E+++ + + L D V
Sbjct: 419 ----------TVYELLSKIDSSKLNSNFYKT-------ELLKPLGIIDLYDRNV-----E 456
Query: 978 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1037
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Query: 1038 PSIDIFEAFDELLLMKRGGRVIYGGKLGVHSKTM 1071
+ I D L +++ G+ G H + +
Sbjct: 517 DVLMIDYVSDRL--------IVFEGEPGRHGRAL 542
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 861 VFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKEQSTFARIS 914
+ G++ +VG +G GKTT + +LAG+ E + I+ + Q+ F R+
Sbjct: 99 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 158
Query: 915 GYVEQNDIHSPQVTVEESLWFSANLR-LSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
E + PQ +R L K+V ++ +F E V L + L L
Sbjct: 159 NG-EIRPVVKPQYVDLLPKAVKGKVRELLKKV--DEVGKFEEVVKELELENVLDREL--- 212
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
LS + +R+ IA L+ F DEP+S LD R V R +R + G+ V+
Sbjct: 213 ---HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 1034 TIHQPSI 1040
H ++
Sbjct: 270 VEHDLAV 276
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 25/211 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 S-GYVEQNDIHSPQVTVEESLWFSA--NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G +++N I V+ +E + S +L ++++K F E+ D
Sbjct: 111 MPGTIKENIIRG--VSYDEYRYKSVVKACQLQQDITK-----FAEQ-----------DNT 152
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V G LS QR R+++A + + + +D P LD V + + +T
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ + ++ D++L++ +G YG
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L +++ ++ G M + G SGK++LL+ + G+L++S +K SG +++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
P T++E++ F + + S + + +++ + E D + ++G
Sbjct: 111 ----------MPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLG- 155
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ ++ D++L++ +G YG
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L +++ ++ G M + G SGK++LL+ + G+L++S +K SG +++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 SGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGF 973
P T++E++ F + + S + + +++ + E D + ++G
Sbjct: 111 ----------MPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQD---NTVLG- 155
Query: 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1033
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 156 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1034 TIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ ++ D++L++ +G YG
Sbjct: 216 VTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L +++ ++ G M + G SGK++LL+ + G+L++S +K SG +++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 25/211 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 S-GYVEQNDIHSPQVTVEESLWFSA--NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G +++N I V+ +E + S +L ++++K F E+ D
Sbjct: 111 MPGTIKENIISG--VSYDEYRYKSVVKACQLQQDITK-----FAEQ-----------DNT 152
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V G LS QR R+++A + + + +D P LD V + + +T
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 212
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ + ++ D++L++ +G YG
Sbjct: 213 RILVTSK--MEHLRKADKILILHQGSSYFYG 241
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L +++ ++ G M + G SGK++LL+ + G+L++S +K SG +++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 26/211 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSGRVSFCSQFSWI 110
Query: 914 S-GYVEQNDIHSPQVTVEESLWFSA--NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G +++N I V+ +E + S +L ++++K F E+ D
Sbjct: 111 MPGTIKENIIG---VSYDEYRYKSVVKACQLQQDITK-----FAEQ-----------DNT 151
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V G LS QR R+++A + + + +D P LD V + + +T
Sbjct: 152 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKT 211
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ + ++ D++L++ +G YG
Sbjct: 212 RILVTSK--MEHLRKADKILILHQGSSYFYG 240
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L +++ ++ G M + G SGK++LL+ + G+L++S +K SG +++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSF 103
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 914 -SGYVEQNDIHSPQVTVEESLWFSA--NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G +++N I V+ +E + S +L +++SK F E +D +
Sbjct: 111 MPGTIKENIIFG--VSYDEYRYRSVIKACQLEEDISK-----FAE-----------KDNI 152
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V G LS Q+ ++++A + + + +D P LD + + + +T
Sbjct: 153 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 212
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ + ++ + D++L++ G YG
Sbjct: 213 RILVTSK--MEHLKKADKILILHEGSSYFYG 241
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L +++ G L A+ GS+GAGKT+L+ ++ G EG IK SG S F+ I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWI 110
Query: 914 -SGYVEQNDIHSPQVTVEESLWFSA--NLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G +++N I V+ +E + S +L +++SK F E +D +
Sbjct: 111 MPGTIKENIIG---VSYDEYRYRSVIKACQLEEDISK-----FAE-----------KDNI 151
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1030
V G LS Q+ ++++A + + + +D P LD + + + +T
Sbjct: 152 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 1031 VVCTIHQPSIDIFEAFDELLLMKRGGRVIYG 1061
+ + ++ + D++L++ G YG
Sbjct: 212 RILVTSK--MEHLKKADKILILHEGSSYFYG 240
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 169 ILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSS---LKKSGNITY 216
+L D++ ++ G++ + G +GK++LL+ + G+L+ S +K SG I++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISF 103
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 921 DIHS-PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE--LDSLRDALVGF---- 973
+IH ++++ E L F NL L++ + E V E+++ +E L+ L D + +
Sbjct: 405 NIHEFTELSISEELEFLKNLNLTE-----REREIVGELLKEIEKRLEFLVDVGLEYLTLS 459
Query: 974 PGSSGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1031
++ LS + +R+ +A ++ + + I +DEPT GL R +++T++ D G TV
Sbjct: 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519
Query: 1032 VCTIHQPSI 1040
+ H +
Sbjct: 520 IVVEHDEEV 528
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPS---IIFMDEPTSGLDARAAAIVMRTVRNTVDT 1027
+G P ++ LS + +R+ +A EL + + +DEPT GL ++ + VD
Sbjct: 799 LGQPATT-LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 1028 GRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVIYGG 1062
G TV+ H ++D+ + D ++ + K GG ++ G
Sbjct: 858 GNTVIVIEH--NLDVIKNADHIIDLGPEGGKEGGYIVATG 895
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 948 NQRHEF-VEEVMRLVELDSLRDALVGF-----PGSSGLSTEQRKRLTIAVELVANP---S 998
++ H+F +E LD+LR+ +G+ P + LS + +R+ +A EL + +
Sbjct: 695 DEAHDFFADESAIFRALDTLREVGLGYLRLGQPATE-LSGGEAQRIKLATELRRSGRGGT 753
Query: 999 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM-----K 1053
+ +DEPT+GL + R + VD G TV+ H+ + + A D +L + +
Sbjct: 754 VYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK--MQVVAASDWVLDIGPGAGE 811
Query: 1054 RGGRVIYGG 1062
GGR++ G
Sbjct: 812 DGGRLVAQG 820
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 23/170 (13%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKEQSTFA 911
L+ ++ G L A+VG G GK++L+ L +EG + I G Y +Q+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKGSVAYVPQQAWI- 77
Query: 912 RISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALV 971
QND ++ E++ F L S Q + ++ L D +
Sbjct: 78 -------QND------SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE---I 121
Query: 972 GFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
G G + LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 122 GEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 37.7 bits (86), Expect = 0.049, Method: Composition-based stats.
Identities = 39/171 (22%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 913
+L ++ G + G +G GKTTL+ ++ ++G+I +G P ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP-----ITKV 76
Query: 914 SG---YVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDAL 970
G ++ + I +++VE+ L A+L K V+KN+ + + + VE+ L+ L
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKNE----IMDALESVEVLDLKKKL 131
Query: 971 VGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1021
LS +R+ +A L+ N I +D+P +D + V++++
Sbjct: 132 ------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 16/114 (14%)
Query: 962 ELDSLRDALVGF-----PGSSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARA 1013
+L++L D +G+ P ++ LS + +R+ +A EL ++ +DEPT+GL
Sbjct: 825 KLETLYDVGLGYMKLGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 883
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVIYGG 1062
A ++ + VD G TV+ H ++D+ + D ++ + RGG+++ G
Sbjct: 884 IARLLDVLHRLVDNGDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 902 GYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
GY ++ + A + G ++ + VT E+L F L L+++ ++ R E RL
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTAMSVT--EALAFFDGLELTEKEAQIARLILREIRDRLG 486
Query: 962 ELDSLRDALVGFPGSSG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAAAIVM 1018
L ++ + S+G LS + +R+ +A ++ + + + +DEP+ GL R ++
Sbjct: 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 546
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
T+++ D G T++ H D A D L+ + G I+GG++
Sbjct: 547 ATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAG-IHGGEV 589
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 16/114 (14%)
Query: 962 ELDSLRDALVGF-----PGSSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARA 1013
+L++L D +G+ P ++ LS + +R+ +A EL ++ +DEPT+GL
Sbjct: 825 KLETLYDVGLGYXKLGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 883
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVIYGG 1062
A ++ + VD G TV+ H ++D+ + D ++ + RGG+++ G
Sbjct: 884 IARLLDVLHRLVDNGDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 902 GYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLV 961
GY ++ + A + G ++ + VT E+L F L L+++ ++ R E RL
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTAXSVT--EALAFFDGLELTEKEAQIARLILREIRDRLG 486
Query: 962 ELDSLRDALVGFPGSSG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAAAIVM 1018
L ++ + S+G LS + +R+ +A ++ + + + +DEP+ GL R ++
Sbjct: 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 546
Query: 1019 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
T+++ D G T++ H D A D L+ + G I+GG++
Sbjct: 547 ATLKSXRDLGNTLIVVEHDE--DTXLAADYLIDIGPGAG-IHGGEV 589
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.0 bits (84), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 26/142 (18%)
Query: 869 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVT 928
+ G +G GK+TLM +A + + G+P ++ + YVE + + T
Sbjct: 465 GICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDT 511
Query: 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLT 988
F + + +KE K++ EF D ++ P S LS + +L
Sbjct: 512 SVLDFVFESGVG-TKEAIKDKLIEF-----------GFTDEMIAMP-ISALSGGWKMKLA 558
Query: 989 IAVELVANPSIIFMDEPTSGLD 1010
+A ++ N I+ +DEPT+ LD
Sbjct: 559 LARAVLRNADILLLDEPTNHLD 580
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 308 VLGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVK 367
+LGLD +V + IRG+SGGQK ++ + +DE + LD + + K
Sbjct: 886 MLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK 942
Query: 368 CLRNF 372
L+ F
Sbjct: 943 ALKEF 947
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 180 GRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQTDNH 239
G ++LGP SGK+TLL A++G L SGNI NG V++ YI + N
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISG----LLPYSGNIFING-----MEVRKIRNYIRYSTN- 79
Query: 240 IPE 242
+PE
Sbjct: 80 LPE 82
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 32/185 (17%)
Query: 870 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQN----DIHSP 925
++G +G+GKTTL+ ++G G+I I+G +I Y+ + + +
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGM-----EVRKIRNYIRYSTNLPEAYEI 86
Query: 926 QVTVEESLWFSANLRLSKEVSKNQRHEFVE--EVMRLVELDSLRDALVGFPGSSGLSTEQ 983
VTV + ++ L +E+ R F+E + ++L E + LR L + S+G S
Sbjct: 87 GVTVNDIVY------LYEELKGLDRDLFLEMLKALKLGE-EILRRKL--YKLSAGQSVLV 137
Query: 984 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1043
R L +A + P I+ +DEP +DA ++ R ++ + G+ + H+ +D+
Sbjct: 138 RTSLALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDML 188
Query: 1044 EAFDE 1048
+ E
Sbjct: 189 NLYKE 193
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 962 ELDSLRDALVGF-----PGSSGLSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARA 1013
+L++L D +G+ P ++ LS + +R+ +A EL ++ +DEPT+GL
Sbjct: 523 KLETLYDVGLGYMKLGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD 581
Query: 1014 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM-----KRGGRVI 1059
A ++ + VD G TV+ H ++D+ + D ++ + RGG+++
Sbjct: 582 IARLLDVLHRLVDNGDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIV 630
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 910 FARISGYVEQNDIHS-PQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRD 968
FARI V I ++V E+L F L L+++ ++ R E RL L ++
Sbjct: 132 FARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191
Query: 969 ALVGFPGSSG-LSTEQRKRLTIAVELVANPSIIF--MDEPTSGLDARAAAIVMRTVRNTV 1025
+ S+G LS + +R+ +A ++ + + + +DEP+ GL R ++ T+++
Sbjct: 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR 251
Query: 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
D G T++ H D A D L+ + G I+GG++
Sbjct: 252 DLGNTLIVVEHDE--DTMLAADYLIDIGPGAG-IHGGEV 287
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 38/198 (19%)
Query: 707 LSYAQSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLF 766
LS +++A +++ A R + + IG +G VL+ PS IG+
Sbjct: 513 LSLSRAAATLSGGEAQRIRLATQIGSGLVG--VLYVLDEPS------IGL------HQRD 558
Query: 767 NSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLA 826
N + L L L + +V++ +E++++ A +I P +G+ G I+ P
Sbjct: 559 NRRLIETLTRLRDLGNTLIVVE-HDEDTIEHADWIVDI----GPGAGEHGGRIVHSGPYD 613
Query: 827 MTFHNVNYY----------VDMPQAMRSQGIPEKKLQLLS----NVSGV---FSPGVLTA 869
N + +++P A+R P ++L ++ N+ G+ F GVLT+
Sbjct: 614 ELLRNKDSITGAYLSGRESIEIP-AIRRSVDPRRQLTVVGAREHNLRGIDVSFPLGVLTS 672
Query: 870 LVGSSGAGKTTLM-DVLA 886
+ G SG+GK+TL+ D+LA
Sbjct: 673 VTGVSGSGKSTLVNDILA 690
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 979 LSTEQRKRLTIAVEL---VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1035
LS + +R+ +A EL ++ +DEPT+GL ++ + VD G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1036 HQPSIDIFEAFD 1047
H ++D+ + D
Sbjct: 924 H--NLDVIKTSD 933
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 946 SKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEP 1005
S ++ E E +R+V L+ L +P LS ++R+ IA+ L+ +P ++ +DEP
Sbjct: 125 SHSELIEKASEKLRMVRLNP-EAVLNSYPLQ--LSGGMKQRVLIALALLLDPVVLILDEP 181
Query: 1006 TSGLDARAAA-IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064
TS LD A I+ T++ H ++ E D++ VIYGG L
Sbjct: 182 TSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAV-AAELADKV-------AVIYGGNL 233
Query: 1065 GVHSKT 1070
++ T
Sbjct: 234 VEYNST 239
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 34.7 bits (78), Expect = 0.45, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 180 GRMTLLLGPPASGKSTLLLALAGKLDSSL 208
GR LL GPP +GK+ L LA+A +L S +
Sbjct: 77 GRAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 180 GRMTLLLGPPASGKSTLLLALAGKLDSSL 208
GR LL GPP +GK+ L LA+A +L S +
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 33.9 bits (76), Expect = 0.67, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 19/104 (18%)
Query: 178 KPGR-MTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236
+PGR + L G P SGKSTL LA L + + + +G+ LD + +
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDN--------RLLEP 70
Query: 237 DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRP 280
+P ETFDF EGF + L +ER I P
Sbjct: 71 RGLLPRKGAPETFDF--------EGFQRLCHALK--HQERVIYP 104
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 1002 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1054
MD+ G+++ A IV+ R ++G+ + IH+ +I+I +A DEL ++
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRK 155
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 855 LSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG 891
L +S + P V+ A+VG GK+ LM+ LAG+K G
Sbjct: 28 LKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 869 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVT 928
+ G +G GK+TL +A + + G+P ++ + YVE + + T
Sbjct: 465 GICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDT 511
Query: 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLT 988
F + + +KE K++ EF D + P S LS + +L
Sbjct: 512 SVLDFVFESGVG-TKEAIKDKLIEF-----------GFTDEXIAXP-ISALSGGWKXKLA 558
Query: 989 IAVELVANPSIIFMDEPTSGLD 1010
+A ++ N I+ +DEPT+ LD
Sbjct: 559 LARAVLRNADILLLDEPTNHLD 580
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 309 LGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKC 368
LGLD +V + IRG+SGGQK ++ + +DE + LD + + K
Sbjct: 887 LGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA 943
Query: 369 LRNF 372
L+ F
Sbjct: 944 LKEF 947
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 26/142 (18%)
Query: 869 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVT 928
+ G +G GK+TL +A + + G+P ++ + YVE + + T
Sbjct: 459 GICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDT 505
Query: 929 VEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLT 988
F + + +KE K++ EF D + P S LS + +L
Sbjct: 506 SVLDFVFESGVG-TKEAIKDKLIEF-----------GFTDEXIAXP-ISALSGGWKXKLA 552
Query: 989 IAVELVANPSIIFMDEPTSGLD 1010
+A ++ N I+ +DEPT+ LD
Sbjct: 553 LARAVLRNADILLLDEPTNHLD 574
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 309 LGLDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKC 368
LGLD +V + IRG+SGGQK ++ + +DE + LD + + K
Sbjct: 881 LGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA 937
Query: 369 LRNF 372
L+ F
Sbjct: 938 LKEF 941
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG 891
+ L +S + P V+ A+VG GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|2Y0F|A Chain A, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|B Chain B, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|C Chain C, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|2Y0F|D Chain D, Structure Of Gcpe (Ispg) From Thermus Thermophilus Hb27
pdb|4G9P|A Chain A, Structure Of The Gcpe-Mecpp (Ispg) Complex From Thermus
Thermophilus
Length = 406
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 59 TTTPRNGGEAKTETIDVRKLNRSRRELVVSKALATNDQDNYKLLSAIKERLDRVGIEVPK 118
T TP EA T V +L+R+ E+V L ND++ K + IK RL G+EVP
Sbjct: 30 TNTPTRDVEATT--AQVLELHRAGSEIV---RLTVNDEEAAKAVPEIKRRLLAEGVEVPL 84
Query: 119 V 119
V
Sbjct: 85 V 85
>pdb|2WPW|A Chain A, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
Pathway (Without Accoa)
pdb|2WPW|B Chain B, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
Pathway (Without Accoa)
pdb|2WPW|C Chain C, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
Pathway (Without Accoa)
pdb|2WPW|D Chain D, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
Pathway (Without Accoa)
Length = 339
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 1065 GVHSKTMIDYFQAL-DGIPSIPSGYNPATWML----EVTTAATEEKLGVDFADVYRSSEQ 1119
G H +D L DG+P++P+GY+ TW E +E +L + V R++++
Sbjct: 156 GTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQE 215
Query: 1120 YR 1121
R
Sbjct: 216 VR 217
>pdb|2WPX|A Chain A, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
Pathway (With Accoa)
pdb|2WPX|B Chain B, Tandem Gnat Protein From The Clavulanic Acid Biosynthesis
Pathway (With Accoa)
Length = 339
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 1065 GVHSKTMIDYFQAL-DGIPSIPSGYNPATWML----EVTTAATEEKLGVDFADVYRSSEQ 1119
G H +D L DG+P++P+GY+ TW E +E +L + V R++++
Sbjct: 156 GTHQWLDLDRHDPLADGVPAVPAGYSLVTWGTITPDEYAVPVSELELSLGAGPVDRAAQE 215
Query: 1120 YR 1121
R
Sbjct: 216 VR 217
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 31.2 bits (69), Expect = 4.7, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 185 LLGPPASGKSTLLLALAGKL--------DSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236
L+G P GKST+ AL G+ + KK G YNG K F V S T
Sbjct: 9 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK---FKVVDLPGVYSLT 65
Query: 237 DNHIPELTVRE 247
N I E+ R+
Sbjct: 66 ANSIDEIIARD 76
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 185 LLGPPASGKSTLLLALAGKL--------DSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236
L+G P GKST+ AL G+ + KK G YNG K F V S T
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK---FKVVDLPGVYSLT 64
Query: 237 DNHIPELTVRE 247
N I E+ R+
Sbjct: 65 ANSIDEIIARD 75
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 185 LLGPPASGKSTLLLALAGKL--------DSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236
L+G P GKST+ AL G+ + KK G YNG K F V S T
Sbjct: 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK---FKVVDLPGVYSLT 64
Query: 237 DNHIPELTVRE 247
N I E+ R+
Sbjct: 65 ANSIDEIIARD 75
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 185 LLGPPASGKSTLLLALAGKL--------DSSLKKSGNITYNGYKLDEFHVQRTSAYISQT 236
L+G P GKST+ AL G+ + KK G YNG K F V S T
Sbjct: 12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK---FKVVDLPGVYSLT 68
Query: 237 DNHIPELTVRE 247
N I E+ R+
Sbjct: 69 ANSIDEIIARD 79
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 854 LLSNVSGVFSPGVLTALVGSSGAGKTTL---MDVLAGRK 889
L S + G F+PGVLT + G +GKTTL +L+G+K
Sbjct: 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
>pdb|1KQ3|A Chain A, Crystal Structure Of A Glycerol Dehydrogenase (Tm0423) From
Thermotoga Maritima At 1.5 A Resolution
Length = 376
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 891 GGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQ- 949
G Y++G I+ +E S F +V +D V E +R++K++ +
Sbjct: 21 GRYVQGAGAINILEEELSRFGE-RAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGEC 79
Query: 950 RHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1009
E +E + LVE ++ D +VG G L T + + +V P+I D P S L
Sbjct: 80 SDEEIERLSGLVEEET--DVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIASTDAPCSAL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,641,312
Number of Sequences: 62578
Number of extensions: 1612581
Number of successful extensions: 4388
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3987
Number of HSP's gapped (non-prelim): 366
length of query: 1427
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1316
effective length of database: 8,027,179
effective search space: 10563767564
effective search space used: 10563767564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)