Query 000555
Match_columns 1427
No_of_seqs 496 out of 5887
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 17:41:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000555.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_328-332//hhsearch_pdb/000555hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 685.0 56.3 782 160-1064 424-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 614.1 59.9 778 161-1064 397-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 463.0 34.8 436 168-1066 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 451.1 35.4 427 167-1063 448-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 450.4 34.3 436 168-1066 36-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 449.6 40.3 215 166-416 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 444.1 31.9 216 826-1078 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 430.7 31.4 202 853-1079 361-569 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 344.5 19.1 215 824-1065 413-637 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 340.5 38.3 198 853-1065 598-898 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=685.04 Aligned_cols=782 Identities=19% Similarity=0.245 Sum_probs=390.9
Q ss_pred CCCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---CCCEEEEECCC
Q ss_conf 577654310111716789587599997599997899999994798999982019999886168433---33428997268
Q 000555 160 FKPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQT 236 (1427)
Q Consensus 160 ~~~~~~~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~---~~~~~aYV~Q~ 236 (1427)
.++.++..++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.+||+++++.. .++.++||+|+
T Consensus 424 ~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~ 500 (1321)
T 4f4c_A 424 TYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQE 500 (1321)
T ss_dssp CCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSS
T ss_pred ECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCC
T ss_conf 079999874333318862288278998058985778888754565164---48615799650112599985046665875
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 88899999999999999830887332457544327888412799902899986410278754431899999929965446
Q 000555 237 DNHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSE 316 (1427)
Q Consensus 237 D~~~~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~d 316 (1427)
+ ++++.||||||.|+.. +.+-++..+|+...+ .+.. +-.|++..|
T Consensus 501 ~-~Lf~~TI~eNI~~g~~--------------------------~~~~~~v~~a~~~a~------l~~~--i~~lp~G~~ 545 (1321)
T 4f4c_A 501 P-ALFNCTIEENISLGKE--------------------------GITREEMVAACKMAN------AEKF--IKTLPNGYN 545 (1321)
T ss_dssp C-CCCSEEHHHHHHTTCT--------------------------TCCHHHHHHHHHHTT------CHHH--HHHSTTTTS
T ss_pred C-EEECCCHHHHHHHHCC--------------------------CCHHHHHHHHHHHCC------CHHH--HHCCCCCCC
T ss_conf 3-3207861678864155--------------------------220999999998756------5468--870888886
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCC
Q ss_conf 42246457888967868999999980899487986799899989799999999999870896899993379515772117
Q 000555 317 TVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFD 396 (1427)
Q Consensus 317 T~VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD 396 (1427)
|.||+++.. ||||||||++||||++.+|+|++||||||+||+.++..|.++|+++.+ ++|+|+..|+. ++...+|
T Consensus 546 T~vGe~G~~-LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrl--s~i~~aD 620 (1321)
T 4f4c_A 546 TLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRL--STIRNAD 620 (1321)
T ss_dssp SEESSSSCC-CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCT--TTTTTCS
T ss_pred CEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCH--HHHHHCC
T ss_conf 075589887-777787999999987259998998455446887899999999999847--98899973638--7898689
Q ss_pred CEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHH--HCCCCCHHC--CCCC------CCCCC-----CCCC
Q ss_conf 099970883898529678999998649999999996-779997--249000000--1259------99998-----6789
Q 000555 397 DLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGV-ADFLQE--VTSKKDQAQ--YWAD------PSKPY-----VFLP 460 (1427)
Q Consensus 397 ~IilL~~G~ivy~Gp~~~~~~~f~~~G~~~p~~~~~-adfl~e--v~s~~~~~~--~~~~------~~~~~-----~~~~ 460 (1427)
+|++|++|+++.+|+++++++. .+. ++.... .....+... .... ..... ....
T Consensus 621 ~Iivl~~G~ive~Gth~eL~~~-----------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1321)
T 4f4c_A 621 LIISCKNGQVVEVGDHRALMAQ-----------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASE 689 (1321)
T ss_dssp EEEEEETTEEEEEECHHHHHTT-----------TCHHHHHHHHHHHHHHHHHHHCC------------------------
T ss_pred EEEEEECCEEECCCCHHHHHHH-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8999639965136899999985-----------32799999962212222332334433223211122222342222222
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCC-------CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 78999999858424767631068778877898-------86667875567999999999999999950635699999999
Q 000555 461 VSEIAKAFKDSRFGKALKSSLSVPYDKSKCHP-------SALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQV 533 (1427)
Q Consensus 461 ~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~s~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~ 533 (1427)
.++.....+.+..............+...... ..........+.+..++. .+.....+....+..
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~ 761 (1321)
T 4f4c_A 690 MDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYH--------ARPHALSLFIGMSTA 761 (1321)
T ss_dssp --------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHH--------TGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHH--------HHHHHHHHHHHHHHH
T ss_conf 110221110132124567740257775315403899999999707863109999999--------877899999999999
Q ss_pred HHH-------HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHH--------HHHHHHHHHHH--HC
Q ss_conf 999-------999998740568898883330358999999999--999977454988--------85001578876--30
Q 000555 534 AFV-------GFVACTMFLRTRLHPTDEKNGNLYLSCLFFAVV--HMMFNGFSELPI--------MITRLPVFYKQ--RD 594 (1427)
Q Consensus 534 ~~~-------~li~gt~f~~~~~~~~~~~~~~~~~g~lff~i~--~~~~~~~~~l~~--------~~~~~~vf~kq--r~ 594 (1427)
++. +++.+...-....++........+...+|+.+. ...+..+..... .-.+..+|.+- ..
T Consensus 762 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~ 841 (1321)
T 4f4c_A 762 TIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQH 841 (1321)
T ss_dssp HHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999987517934556678999999999999999999999999999999999999999988873499
Q ss_pred CCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Q ss_conf 89860----57999999999997999989998888855038678646799999999999999999999999----86135
Q 000555 595 NYFHP----AWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMA----SIARD 666 (1427)
Q Consensus 595 ~~~y~----~~ay~la~~l~~ip~~~~~~~i~~~i~Y~~vg~~~~~~~F~~~~l~l~~~~~~~~~l~~~ia----a~~~~ 666 (1427)
..|+. +..-.+.....++.. +... ....+ ......++.+++ .+.-+
T Consensus 842 ~~ffd~~~~~~G~i~~r~s~D~~~--i~~~---------------l~~~l---------~~~~~~~~~~i~~~~~~~~~~ 895 (1321)
T 4f4c_A 842 IGFFDSPQNASGKISTRLATDVPN--LRTA---------------IDFRF---------STVITTLVSMVAGIGLAFFYG 895 (1321)
T ss_dssp SSSTTSGGGCHHHHHHHHHTHHHH--HHTT---------------TSHHH---------HHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHCCCCCCHHHHHHCCHHHHHH--HHHH---------------HHHHH---------HHHHHHHHHHHHHEEEEHHHH
T ss_conf 333216788848888502505999--9999---------------99999---------999998653777702213786
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHCHHHHHHHHHH-HHHHCCC-----CCCCCCCCCCCCCC
Q ss_conf 78899988999999997761212----67992458899987769999999999-9751257-----44444456665334
Q 000555 667 MVVANTFASSSLLIVFLMGGFII----PKESIKPWWSWAYWVSPLSYAQSAIS-VNEFAAA-----RWKKKSVIGDNTIG 736 (1427)
Q Consensus 667 ~~~a~~~~~~~~l~~~l~~Gf~i----~~~~ip~~~~W~~~isp~~ya~~a~~-~nef~~~-----~~~~~~~~~~~~~g 736 (1427)
...+..+ ..+++++.+..++. ........-......+...-+..++. +.-|... +|.... .. .-
T Consensus 896 ~~l~lv~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~--~~--~~ 969 (1321)
T 4f4c_A 896 WQMALLI--IAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKL--DI--PH 969 (1321)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHH--HH--HH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HH--HH
T ss_conf 8999999--998889999999999999999999999988898899999962798886141488999999999--99--99
Q ss_pred CCEECCCCCCCCCCCC-HHHHHHHHHHHHHHHH----------------H--HHHHHHH-CCCCCCCCCCCCCHHHHHHH
Q ss_conf 4100223568887410-2337799999999989----------------9--9999976-18577864212410132587
Q 000555 737 YNVLHTHSLPSGDYWY-WIGVGALLLYSLLFNS----------------V--VTLALAY-LNPLRKSQVVIDDKEENSVK 796 (1427)
Q Consensus 737 ~~~L~~~~~~~~~~~~-w~~~g~ll~~~i~f~~----------------l--~~l~l~~-~~~~~~~~~~~~~~~~~~~~ 796 (1427)
...... ... ...+. +......+...+.+.. + ...++.. ..+.........+ ......
T Consensus 970 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 1046 (1321)
T 4f4c_A 970 KEAIKE-AFI-QGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPE-YAKATF 1046 (1321)
T ss_dssp HHHHHH-HHH-HHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHH-HHHHHH
T ss_pred HHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 999999-999-99999999999999999999875788753765421478999999998778899999999999-999999
Q ss_pred HHHHHHCC-CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCC
Q ss_conf 65321012-46899987776686567788237983114698275100013888434301024056884883999976899
Q 000555 797 MAKQQFEI-NTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSG 875 (1427)
Q Consensus 797 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sG 875 (1427)
..++.... +..+..+..+..+..+|. ...++|+||+++++.. .+.++|+|+|+.++|||++||+|+||
T Consensus 1047 a~~ri~~~l~~~~~~~~~~~~~~~~~~-~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SG 1115 (1321)
T 4f4c_A 1047 AGGIIFGMLRKISKIDSLSLAGEKKKL-YGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSG 1115 (1321)
T ss_dssp HHHHHHHHHHCCCSSCTTCCCSBCCCC-CCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCC-CCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCC
T ss_conf 999899986076657776677878888-8818999879857999----------98821245169988989999989999
Q ss_pred CCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99357884041897786269899997913782---222323888715888899999999999998512886799877999
Q 000555 876 AGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHE 952 (1427)
Q Consensus 876 aGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~ 952 (1427)
||||||+++|.|... +.+|+|.+||.+.+. ..+|+.++||+|++.++ ..|+|||+.|.. .|.+.++++
T Consensus 1116 sGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNI~~gl---d~~~~sd~e--- 1186 (1321)
T 4f4c_A 1116 CGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF-DCSIAENIIYGL---DPSSVTMAQ--- 1186 (1321)
T ss_dssp SSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCC-SEEHHHHHSSSS---CTTTSCHHH---
T ss_pred CHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEE-CCCHHHHHHCCC---CCCCCCHHH---
T ss_conf 819999999956863--89978999999865499999985459987899732-723999974549---999999999---
Q ss_pred HHHHHHHHCCC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999999399-------64333423489998899888888999999861997889819999999999999999999988
Q 000555 953 FVEEVMRLVEL-------DSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1025 (1427)
Q Consensus 953 ~v~~vl~~l~L-------~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~ 1025 (1427)
+.++++..++ .+-.|+.||..| .+||||||||++|||+|+++|+||+||||||+||+.|+..|++.+++..
T Consensus 1187 -i~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1187 -VEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp -HHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred -HHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf -99999982984999717678999823889-1569999999999999971799899968111578999999999999973
Q ss_pred HCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCCC
Q ss_conf 589899999558888899741658899169199990578
Q 000555 1026 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1026 ~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
+++|+|+++|+++ ....+|+|++|++ |+++..|++
T Consensus 1265 -~~~TvI~IAHRLs--Ti~~aD~I~Vld~-G~IvE~Gth 1299 (1321)
T 4f4c_A 1265 -EGRTCIVIAHRLN--TVMNADCIAVVSN-GTIIEKGTH 1299 (1321)
T ss_dssp -SSSEEEEECSSSS--TTTTCSEEEEESS-SSEEEEECH
T ss_pred -CCCEEEEECCCHH--HHHHCCEEEEEEC-CEEEEECCH
T ss_conf -9998999606899--9996999999989-899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=614.06 Aligned_cols=778 Identities=18% Similarity=0.230 Sum_probs=370.8
Q ss_pred CCCCCCCEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC---CCCEEEEECCCC
Q ss_conf 77654310111716789587599997599997899999994798999982019999886168433---334289972688
Q 000555 161 KPKRHSLTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFH---VQRTSAYISQTD 237 (1427)
Q Consensus 161 ~~~~~~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~---~~~~~aYV~Q~D 237 (1427)
++.+...++|+|+|+.++||+.++|+||||||||||+++|+|.++|. +|+|.++|.++.+.. .++.++||+|++
T Consensus 397 y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp CSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred CCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCC
T ss_conf 69999871012545897599889998999997999999980788999---738999999877579999986548986887
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 88999999999999998308873324575443278884127999028999864102787544318999999299654464
Q 000555 238 NHIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLCSET 317 (1427)
Q Consensus 238 ~~~~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~~dT 317 (1427)
.++ +.||+||+.|+... . .. .++++..+.+ ..+..+. .|++..||
T Consensus 474 ~l~-~~ti~eNi~~g~~~--~---~~------------------~~~~~~~~~~---------~~~~~i~--~l~~g~~t 518 (1284)
T 3g5u_A 474 VLF-ATTIAENIRYGRED--V---TM------------------DEIEKAVKEA---------NAYDFIM--KLPHQFDT 518 (1284)
T ss_dssp CCC-SSCHHHHHHHHCSS--C---CH------------------HHHHHHHHHT---------TCHHHHH--HSTTGGGC
T ss_pred CCC-CCCHHHHHHCCCCC--C---CH------------------HHHHHHHHHH---------CCHHHHH--HCCCCCCC
T ss_conf 537-76699997457989--9---99------------------9999999982---------9699997--46563345
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCC
Q ss_conf 22464578889678689999999808994879867998999897999999999998708968999933795157721170
Q 000555 318 VVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDD 397 (1427)
Q Consensus 318 ~VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~ 397 (1427)
.+|+.+. .||||||||++|||+++.+|++++||||||+||+.++..+.+.++.+. .++|+|+..|. .++...+|+
T Consensus 519 ~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~--l~~i~~~d~ 593 (1284)
T 3g5u_A 519 LVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHR--LSTVRNADV 593 (1284)
T ss_dssp CCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSC--HHHHTTCSE
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECC--HHHHHCCCE
T ss_conf 0147878-659999999999999952999899979877779999999999999973--99989999407--789974998
Q ss_pred EEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHHHCCCCCHHC-C-CCCCCCC--CCCCCHHHHHHH-HHHC
Q ss_conf 99970883898529678999998649999999996-779997249000000-1-2599999--867897899999-9858
Q 000555 398 LLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGV-ADFLQEVTSKKDQAQ-Y-WADPSKP--YVFLPVSEIAKA-FKDS 471 (1427)
Q Consensus 398 IilL~~G~ivy~Gp~~~~~~~f~~~G~~~p~~~~~-adfl~ev~s~~~~~~-~-~~~~~~~--~~~~~~~~~~~~-~~~s 471 (1427)
|++|++|+++++|+++++++. ++. ++.........+... . ......+ ............ .+..
T Consensus 594 i~vl~~G~i~~~g~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (1284)
T 3g5u_A 594 IAGFDGGVIVEQGNHDELMRE-----------KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRR 662 (1284)
T ss_dssp EEECSSSCCCCEECHHHHHHT-----------TSHHHHHHHHTC------------------------------------
T ss_pred EEEEECCEEEEECCHHHHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999989999997889999867-----------877999999743002211133333322222344333333332000345
Q ss_pred HHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHH
Q ss_conf 424767631068778--8778988666787556799999999999999995063569999999999-------9999998
Q 000555 472 RFGKALKSSLSVPYD--KSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAF-------VGFVACT 542 (1427)
Q Consensus 472 ~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~~~-------~~li~gt 542 (1427)
.. ......+.. ................+.+..++.. ++.+..+....+..++ ...+.+.
T Consensus 663 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1284)
T 3g5u_A 663 ST----RKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLN--------STEWPYFVVGIFCAIINGGLQPAFSVIFSK 730 (1284)
T ss_dssp -------------------------CCCCCSCCCTTHHHHHH--------HHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC----CCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43----334456422332110245553136625899999984--------515799999999999999999999999999
Q ss_pred H---HCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHH--------HHHHHHHHHHHHHHHHC--CCCCC----HHHH
Q ss_conf 7---40568898883330358999999999--99997745--------49888500157887630--89860----5799
Q 000555 543 M---FLRTRLHPTDEKNGNLYLSCLFFAVV--HMMFNGFS--------ELPIMITRLPVFYKQRD--NYFHP----AWAW 603 (1427)
Q Consensus 543 ~---f~~~~~~~~~~~~~~~~~g~lff~i~--~~~~~~~~--------~l~~~~~~~~vf~kqr~--~~~y~----~~ay 603 (1427)
+ +.... ..............++..+. ...+..+. +......+..+|.+-.. ..|+. +..-
T Consensus 731 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~ 809 (1284)
T 3g5u_A 731 VVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGA 809 (1284)
T ss_dssp HHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHH
T ss_pred HHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHH
T ss_conf 999985568-5033677999999999999999999999999999999999999999999999983998887578998899
Q ss_pred HHHHHHHH-----------HHHHH--HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999-----------97999--989998888855038678646799999999999999999999999861357889
Q 000555 604 SVASWILR-----------VPYSV--LEAVVWSCVVYFTVGFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVA 670 (1427)
Q Consensus 604 ~la~~l~~-----------ip~~~--~~~~i~~~i~Y~~vg~~~~~~~F~~~~l~l~~~~~~~~~l~~~iaa~~~~~~~a 670 (1427)
.+.....+ ++..+ +..++...++-+. +.+...-.....+.++ ........+.+....... .
T Consensus 810 l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~l~lv~l~~~p~~--~~~~~~~~~~~~~~~~~~--~ 883 (1284)
T 3g5u_A 810 LTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI--YGWQLTLLLLAIVPII--AIAGVVEMKMLSGQALKD--K 883 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCSSSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH--H
T ss_conf 999999999999999999999999999999999999999--9699999999999999--999999999999999999--9
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHH----------------HHHCHHHHHHHH-HHHHHHCCCCCCCCCCCCC
Q ss_conf 998899999999776121267-9924588999----------------877699999999-9997512574444445666
Q 000555 671 NTFASSSLLIVFLMGGFIIPK-ESIKPWWSWA----------------YWVSPLSYAQSA-ISVNEFAAARWKKKSVIGD 732 (1427)
Q Consensus 671 ~~~~~~~~l~~~l~~Gf~i~~-~~ip~~~~W~----------------~~isp~~ya~~a-~~~nef~~~~~~~~~~~~~ 732 (1427)
.......-...-.+.|.-..+ -.....+.-. .+... .++... +..--+....|
T Consensus 884 ~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------- 954 (1284)
T 3g5u_A 884 KELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGI-TFSFTQAMMYFSYAAAFR-------- 954 (1284)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------
T ss_conf 99999999999999889999984659999999999999999999999999999-999999999999999999--------
Q ss_pred CCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCC
Q ss_conf 533441002235688874102337799999999989999999761857786421241013258765321012-4689998
Q 000555 733 NTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFEI-NTTSAPE 811 (1427)
Q Consensus 733 ~~~g~~~L~~~~~~~~~~~~w~~~g~ll~~~i~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 811 (1427)
.|...+.. + +..++.++.+..... .....+......- ..... ... ...+.... +..+...
T Consensus 955 --~g~~lv~~-~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~-~~~---a~~ri~~~l~~~~~~~ 1015 (1284)
T 3g5u_A 955 --FGAYLVTQ-Q--------LMTFENVLLVFSAIV-FGAMAVGQVSSFA---PDYAK-ATV---SASHIIRIIEKTPEID 1015 (1284)
T ss_dssp --HHHCCCSS-S--------CSCSTTHHHHHHHHH-HHHHHHHHHTSSS---CCSTH-HHH---HHHHHHHHHHSCCSSS
T ss_pred --HHHHHHHH-C--------CCCHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHH-HHH---HHHHHHHHHCCCCCCC
T ss_conf --99999990-9--------806999999999999-9999999999999---99999-999---9999999983887666
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCC
Q ss_conf 77766865677882379831146982751000138884343010240568848839999768999935788404189778
Q 000555 812 SGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTG 891 (1427)
Q Consensus 812 ~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~ 891 (1427)
..+..+...+.....++++|+++.++.. ...++|+|+|+.++|||++||+|+||||||||+++|+|..+
T Consensus 1016 ~~~~~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~- 1084 (1284)
T 3g5u_A 1016 SYSTQGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD- 1084 (1284)
T ss_dssp SCCSSCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC-
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-
T ss_conf 6555665456777857999989977999----------98700203059976998899988999978999999946867-
Q ss_pred CEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC------
Q ss_conf 6269899997913782---2223238887158888999999999999985128867998779999999999939------
Q 000555 892 GYIEGDIKISGYPKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE------ 962 (1427)
Q Consensus 892 ~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~------ 962 (1427)
+.+|+|.++|.+... ..+++.++||+|+..++ ..||+||+.+.... ...++++.. +.++..+
T Consensus 1085 -p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~i~----~~~~~~~~~~~i~ 1155 (1284)
T 3g5u_A 1085 -PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEEIV----RAAKEANIHQFID 1155 (1284)
T ss_dssp -CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHHHH----HHHHHHTCHHHHS
T ss_pred -CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHHHH----HHHHHHCCHHHHH
T ss_conf -89977989999800078999970268987787406-66699997466877---899999999----9999839599997
Q ss_pred -CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf -9643334234899988998888889999998619978898199999999999999999999885898999995588888
Q 000555 963 -LDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 1041 (1427)
Q Consensus 963 -L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~ 1041 (1427)
+.+..|+.+|..+ ..||||||||++|||+|+.+|+||+|||||+|||..++..|++.+++. .+|+|+|+++|+++.
T Consensus 1156 ~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~- 1232 (1284)
T 3g5u_A 1156 SLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST- 1232 (1284)
T ss_dssp STTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-
T ss_pred HCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-
T ss_conf 27042456117888-933899999999999997499999986875557999999999999986-799989999558799-
Q ss_pred HHHHHCEEEEEECCCEEEECCCC
Q ss_conf 99741658899169199990578
Q 000555 1042 IFEAFDELLLMKRGGRVIYGGKL 1064 (1427)
Q Consensus 1042 i~~~fD~i~~l~~gg~~~~~G~~ 1064 (1427)
+ ..+|++++|++ |+++..|++
T Consensus 1233 i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1233 I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp G-GSCSEEEEEET-BEEEEEECH
T ss_pred H-HCCCEEEEEEC-CEEEEECCH
T ss_conf 9-80998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=463.03 Aligned_cols=436 Identities=22% Similarity=0.270 Sum_probs=308.5
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 01117167895875999975999978999999947989999820199---------9988616843-----333428997
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNI---------TYNGYKLDEF-----HVQRTSAYI 233 (1427)
Q Consensus 168 ~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~aYV 233 (1427)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.+.... ..+..++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
Q ss_conf 26888899---999999999999830887332457544327888412799902899986410278754431899999929
Q 000555 234 SQTDNHIP---ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLG 310 (1427)
Q Consensus 234 ~Q~D~~~~---~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lg 310 (1427)
.|.....+ ..||+|++... . ...+++.+++.+|
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~----~----------------------------------------~~~~~~~~L~~lg 217 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKV----D----------------------------------------EVGKFEEVVKELE 217 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHT----C----------------------------------------CSSCHHHHHHHTT
T ss_pred ECHHHHCHHHCCCCHHHHHHHH----H----------------------------------------HHHHHHHHHHHCC
T ss_conf 3204313022005099996316----7----------------------------------------9999999999759
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 96544642246457888967868999999980899487986799899989799999999999870896899993379515
Q 000555 311 LDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPE 390 (1427)
Q Consensus 311 L~~~~dT~VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e 390 (1427)
|++..|..++ .|||||||||+||++|+.+|++++|||||+|||..++..+++.|+++.+ .+.|+|++.|. ...
T Consensus 218 L~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHd-l~~ 290 (607)
T 3bk7_A 218 LENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHD-LAV 290 (607)
T ss_dssp CTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHH
T ss_pred CCCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHH
T ss_conf 9704379805-----6999999999999998459999999797435899999999999999986-69989999648-589
Q ss_pred HHHHCCCEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77211709997088389852967899999864999999999677999724900000012599999867897899999985
Q 000555 391 TFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKD 470 (1427)
Q Consensus 391 ~~~lfD~IilL~~G~ivy~Gp~~~~~~~f~~~G~~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1427)
+..++|+|++|.++...| |.. . .+. ..
T Consensus 291 ~~~~adri~vl~~~~~~~-g~~-------------------------------------~---~~~---~~--------- 317 (607)
T 3bk7_A 291 LDYLSDVIHVVYGEPGVY-GIF-------------------------------------S---KPK---GT--------- 317 (607)
T ss_dssp HHHHCSEEEEEESCTTTE-EEE-------------------------------------C---CCE---EH---------
T ss_pred HHHHCCEEEEECCCCCCC-CEE-------------------------------------C---CCH---HH---------
T ss_conf 886589999977986445-212-------------------------------------2---413---27---------
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 84247676310687788778988666787556799999999999999995063569999999999999999874056889
Q 000555 471 SRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLH 550 (1427)
Q Consensus 471 s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~ 550 (1427)
+.... . +.
T Consensus 318 -------------------------------------------~~~i~------------------~------~~----- 325 (607)
T 3bk7_A 318 -------------------------------------------RNGIN------------------E------FL----- 325 (607)
T ss_dssp -------------------------------------------HHHHH------------------H------HH-----
T ss_pred -------------------------------------------HHHHH------------------H------HH-----
T ss_conf -------------------------------------------99999------------------9------97-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88833303589999999999999774549888500157887630898605799999999999799998999888885503
Q 000555 551 PTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTV 630 (1427)
Q Consensus 551 ~~~~~~~~~~~g~lff~i~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~i~Y~~v 630 (1427)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 86786467999999999999999999999998613578899988999999997761212679924588999877699999
Q 000555 631 GFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYA 710 (1427)
Q Consensus 631 g~~~~~~~F~~~~l~l~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ya 710 (1427)
.|+.. ...
T Consensus 326 ------------------------------------------------------~~~~~-~~~----------------- 333 (607)
T 3bk7_A 326 ------------------------------------------------------QGYLK-DEN----------------- 333 (607)
T ss_dssp ------------------------------------------------------HTEET-TTT-----------------
T ss_pred ------------------------------------------------------HHCCH-HHH-----------------
T ss_conf ------------------------------------------------------51013-455-----------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99999975125744444456665334410022356888741023377999999999899999997618577864212410
Q 000555 711 QSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDK 790 (1427)
Q Consensus 711 ~~a~~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~ll~~~i~f~~l~~l~l~~~~~~~~~~~~~~~~ 790 (1427)
.+ +.... .....
T Consensus 334 -----------~~---------------------~~~~~----------------------------~~~~~-------- 345 (607)
T 3bk7_A 334 -----------VR---------------------FRPYE----------------------------IRFTK-------- 345 (607)
T ss_dssp -----------EE---------------------CCSSC----------------------------CCCCC--------
T ss_pred -----------HH---------------------CCCCC----------------------------CCCCC--------
T ss_conf -----------43---------------------01212----------------------------34565--------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEE
Q ss_conf 13258765321012468999877766865677882379831146982751000138884343010240568848839999
Q 000555 791 EENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTAL 870 (1427)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai 870 (1427)
. .+. .. +.....++++|++..++ . ..|+++++.+++||++||
T Consensus 346 ----------------~-~~~-~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i 387 (607)
T 3bk7_A 346 ----------------L-SER-VD------VERETLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGI 387 (607)
T ss_dssp ----------------S-TTS-CC------CCCCEEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEE
T ss_pred ----------------C-CCC-CC------CCCCEEEEEECEEEEEC-------------C-EEEEECCCCCCCCCEEEE
T ss_conf ----------------7-775-44------46752899913098744-------------3-489935153279989999
Q ss_pred ECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 76899993578840418977862698999979137822223238887158888999999999999985128867998779
Q 000555 871 VGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR 950 (1427)
Q Consensus 871 ~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~ 950 (1427)
+||||||||||+++|+|...+ .+|+|.+ .+.++|++|+....+.+||+|++....... ...
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~ 448 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNS 448 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHC
T ss_pred ECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCH
T ss_conf 999998999999999669888--8628999----------027999805766778984999997531258-------778
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCC
Q ss_conf 9999999999399643334234899988998888889999998619978898199999999999999999999885-898
Q 000555 951 HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1029 (1427)
Q Consensus 951 ~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~ 1029 (1427)
.+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||..+...+++.++++++ .|.
T Consensus 449 ~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 523 (607)
T 3bk7_A 449 NFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523 (607)
T ss_dssp HHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999998769933754992-----237999999999999997489989996874478999999999999999974798
Q ss_pred EEEEEECCCCHHHHHHHCEEEEEEC-CCEEEECCCCCC
Q ss_conf 9999955888889974165889916-919999057887
Q 000555 1030 TVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYGGKLGV 1066 (1427)
Q Consensus 1030 tvi~t~Hqps~~i~~~fD~i~~l~~-gg~~~~~G~~~~ 1066 (1427)
|||+++|++. .+...+|++++|.. .|+....|++..
T Consensus 524 tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 524 TALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp EEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 9999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=451.08 Aligned_cols=427 Identities=22% Similarity=0.302 Sum_probs=301.3
Q ss_pred CEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 1011171678958759999759999789999999479899998201999988616843333428997268-888999999
Q 000555 167 LTILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNITYNGYKLDEFHVQRTSAYISQT-DNHIPELTV 245 (1427)
Q Consensus 167 ~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V~~nG~~~~~~~~~~~~aYV~Q~-D~~~~~lTV 245 (1427)
..+|+|+|+.+++|+.++|+||||||||||+++|+| |+| +|.+... ....+|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC-CCCCCCCCCCCC
Q ss_conf 9999999983088733245754432788841279990289998641027875443189999992996-544642246457
Q 000555 246 RETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLGLD-LCSETVVGNDMI 324 (1427)
Q Consensus 246 rEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~-~~~dT~VG~~~~ 324 (1427)
.|++.+ ...+. ..+++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~~----------------------------------------~~~v~~~L~~lgL~~~~~~~~~~---- 547 (986)
T 2iw3_A 514 LDFVFE--SGVGT----------------------------------------KEAIKDKLIEFGFTDEMIAMPIS---- 547 (986)
T ss_dssp HHHHHT--TCSSC----------------------------------------HHHHHHHHHHTTCCHHHHHSBGG----
T ss_pred HHHHHH--HHCCH----------------------------------------HHHHHHHHHHCCCCHHHHCCCCC----
T ss_conf 999998--61279----------------------------------------99999999986998446439802----
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEEECC
Q ss_conf 88896786899999998089948798679989998979999999999987089689999337951577211709997088
Q 000555 325 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLLSEG 404 (1427)
Q Consensus 325 rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL~~G 404 (1427)
.||||||||++||++++.+|++++|||||+|||..+...+.+.|++ .+.|+|++.|. ..++.+.+|++++|.+|
T Consensus 548 -~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G 621 (986)
T 2iw3_A 548 -ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGL 621 (986)
T ss_dssp -GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECC-HHHHHHHCCEEEEEECC
T ss_conf -0799999999999999649999999797667999999999999986----79989999798-89999868999999799
Q ss_pred EEE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCC
Q ss_conf 389-8529678999998649999999996779997249000000125999998678978999999858424767631068
Q 000555 405 HLV-YQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKDSRFGKALKSSLSV 483 (1427)
Q Consensus 405 ~iv-y~Gp~~~~~~~f~~~G~~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 483 (1427)
+++ +.|+.+++.... | ....+
T Consensus 622 ~iv~~~G~~~e~~~~~-------~----------------~~~~~----------------------------------- 643 (986)
T 2iw3_A 622 KLRKYKGNFTEFVKKC-------P----------------AAKAY----------------------------------- 643 (986)
T ss_dssp EEEEEESCHHHHHHHC-------G----------------GGGGS-----------------------------------
T ss_pred EEECCCCCHHHHHHHH-------H----------------HHHHH-----------------------------------
T ss_conf 4426779999998614-------8----------------89999-----------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 77887789886667875567999999999999999950635699999999999999998740568898883330358999
Q 000555 484 PYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLHPTDEKNGNLYLSC 563 (1427)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~~~~~~~~~~~~g~ 563 (1427)
+ .......
T Consensus 644 -------------------------------------------------------------~--~l~~~~~--------- 651 (986)
T 2iw3_A 644 -------------------------------------------------------------E--ELSNTDL--------- 651 (986)
T ss_dssp -------------------------------------------------------------S--STTTCCC---------
T ss_pred -------------------------------------------------------------H--HHHHHHH---------
T ss_conf -------------------------------------------------------------8--6445443---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999999997745498885001578876308986057999999999997999989998888855038678646799999
Q 000555 564 LFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTVGFAPETGRFFRHM 643 (1427)
Q Consensus 564 lff~i~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~i~Y~~vg~~~~~~~F~~~~ 643 (1427)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999986135788999889999999977612126799245889998776999999999997512574
Q 000555 644 FLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYAQSAISVNEFAAAR 723 (1427)
Q Consensus 644 l~l~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ya~~a~~~nef~~~~ 723 (1427)
.
T Consensus 652 -------------------------------------------------------------------------------~ 652 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------E 652 (986)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------H
T ss_conf -------------------------------------------------------------------------------2
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 44444566653344100223568887410233779999999998999999976185778642124101325876532101
Q 000555 724 WKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDKEENSVKMAKQQFE 803 (1427)
Q Consensus 724 ~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~ll~~~i~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1427)
+ .++. + .
T Consensus 653 ~-------------------~~p~-------------------------------~-~---------------------- 659 (986)
T 2iw3_A 653 F-------------------KFPE-------------------------------P-G---------------------- 659 (986)
T ss_dssp C-------------------CCCC-------------------------------C-C----------------------
T ss_pred C-------------------CCCC-------------------------------C-C----------------------
T ss_conf 0-------------------3565-------------------------------5-5----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 24689998777668656778823798311469827510001388843430102405688488399997689999357884
Q 000555 804 INTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMD 883 (1427)
Q Consensus 804 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~ 883 (1427)
........ ....++++|+++.++ ...+++|+|+|+.+++|++++|+||||||||||++
T Consensus 660 -----~~~~~~~~------~~~mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLk 717 (986)
T 2iw3_A 660 -----YLEGVKTK------QKAIVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLIN 717 (986)
T ss_dssp -----CCTTCCST------TSEEEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHH
T ss_pred -----CCCCCCCC------CCCEEEEEEEEEEEC-----------CCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHH
T ss_conf -----43345667------870699984699818-----------98741343227998289789998999987999999
Q ss_pred HHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHCC------------CC-----
Q ss_conf 0418977862698999979137822223238887158888----99999999999998512------------88-----
Q 000555 884 VLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIH----SPQVTVEESLWFSANLR------------LS----- 942 (1427)
Q Consensus 884 ~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~----~~~~Tv~e~l~~~a~l~------------~~----- 942 (1427)
+|+|...+ .+|+|.++|. ..++|++|+..+ ....|++|++.+.-... +.
T Consensus 718 lLaGll~P--~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~ 787 (986)
T 2iw3_A 718 VLTGELLP--TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAE 787 (986)
T ss_dssp HHTTSSCC--SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSS
T ss_pred HHHCCCCC--CCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
T ss_conf 99579888--8608998686--------4257631302433210011479999887750450255554332103435554
Q ss_pred -----------------------------------------------CCC--------C---------------------
Q ss_conf -----------------------------------------------679--------9---------------------
Q 000555 943 -----------------------------------------------KEV--------S--------------------- 946 (1427)
Q Consensus 943 -----------------------------------------------~~~--------~--------------------- 946 (1427)
... +
T Consensus 788 ~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~ 867 (986)
T 2iw3_A 788 AMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEAL 867 (986)
T ss_dssp GGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42000112320123444455543122200210002554320000012343234432101677766676655443245554
Q ss_pred -----HHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf -----8779999999999939964-3-33423489998899888888999999861997889819999999999999999
Q 000555 947 -----KNQRHEFVEEVMRLVELDS-L-RDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1019 (1427)
Q Consensus 947 -----~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~ 1019 (1427)
.....+.++++++.+||.. . .+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++
T Consensus 868 ~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~ 942 (986)
T 2iw3_A 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSK 942 (986)
T ss_dssp HTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 30223234799999999976998054448980-----4239999999999999983999999979865779999999999
Q ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEECCC
Q ss_conf 99998858989999955888889974165889916919999057
Q 000555 1020 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGK 1063 (1427)
Q Consensus 1020 ~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~~gg~~~~~G~ 1063 (1427)
.+++. +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 943 ~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 943 ALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 99974---997999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=450.38 Aligned_cols=436 Identities=23% Similarity=0.268 Sum_probs=306.8
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 01117167895875999975999978999999947989999820199---------9988616843-----333428997
Q 000555 168 TILNDVSGVVKPGRMTLLLGPPASGKSTLLLALAGKLDSSLKKSGNI---------TYNGYKLDEF-----HVQRTSAYI 233 (1427)
Q Consensus 168 ~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL~~L~G~l~~~~~~~G~V---------~~nG~~~~~~-----~~~~~~aYV 233 (1427)
.+|+|+| .+++|+.++|+||||||||||+++|+|.+.|+ +|++ .++|.+.... ..+..++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHC
Q ss_conf 26888899---999999999999830887332457544327888412799902899986410278754431899999929
Q 000555 234 SQTDNHIP---ELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPSPEIDAFMKASSVGGKKHSVSTDYVLKVLG 310 (1427)
Q Consensus 234 ~Q~D~~~~---~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~~~~d~~~ka~~~~~~~~~~~~~~vl~~lg 310 (1427)
.|.....+ ..||+|++.... ...+++.+++.+|
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~--------------------------------------------~~~~~~~~l~~lg 147 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKAD--------------------------------------------ETGKLEEVVKALE 147 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHC--------------------------------------------SSSCHHHHHHHTT
T ss_pred HHHHHHCCHHHHCCHHHHHHHHH--------------------------------------------HHHHHHHHHHHCC
T ss_conf 22343210121121999974313--------------------------------------------9999999998769
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 96544642246457888967868999999980899487986799899989799999999999870896899993379515
Q 000555 311 LDLCSETVVGNDMIRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCLRNFVHQMDATILMALLQPPPE 390 (1427)
Q Consensus 311 L~~~~dT~VG~~~~rgLSGGQKkRvsiA~aLv~~~~illLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e 390 (1427)
|++..+..++ .|||||||||+||++|+.+|++++|||||++||..+...+++.|+++.+ .+.|+|++.|. ..+
T Consensus 148 l~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~ 220 (538)
T 1yqt_A 148 LENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAV 220 (538)
T ss_dssp CTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHH
T ss_pred CCHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHH
T ss_conf 9736609835-----4899999999999998469999999897345798899999999999996-59879999478-899
Q ss_pred HHHHCCCEEEEECCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77211709997088389852967899999864999999999677999724900000012599999867897899999985
Q 000555 391 TFDLFDDLLLLSEGHLVYQGPRAEVLEFFESLGFQLPPRKGVADFLQEVTSKKDQAQYWADPSKPYVFLPVSEIAKAFKD 470 (1427)
Q Consensus 391 ~~~lfD~IilL~~G~ivy~Gp~~~~~~~f~~~G~~~p~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (1427)
+...+|+|++|.+|...|. . +. .++ +..+
T Consensus 221 ~~~~~dri~vl~~~~~~~~-~-------------------------------------~~---~~~---~~~~------- 249 (538)
T 1yqt_A 221 LDYLSDIIHVVYGEPGVYG-I-------------------------------------FS---QPK---GTRN------- 249 (538)
T ss_dssp HHHHCSEEEEEEEETTTEE-E-------------------------------------EC---CCE---EHHH-------
T ss_pred HHHHCCEEEEECCCCCCCC-C-------------------------------------CC---CHH---HHHH-------
T ss_conf 9976889999868632440-2-------------------------------------25---535---5899-------
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 84247676310687788778988666787556799999999999999995063569999999999999999874056889
Q 000555 471 SRFGKALKSSLSVPYDKSKCHPSALSKTRYAVSKWELFRTCFAREILLIQRHSFLYIFRTCQVAFVGFVACTMFLRTRLH 550 (1427)
Q Consensus 471 s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~R~~~~~~r~~~~~~~~~~~~~~~~li~gt~f~~~~~~ 550 (1427)
.. .+ +.
T Consensus 250 ------------------------------------~~----~~-----------------------------~~----- 255 (538)
T 1yqt_A 250 ------------------------------------GI----NE-----------------------------FL----- 255 (538)
T ss_dssp ------------------------------------HH----HH-----------------------------HH-----
T ss_pred ------------------------------------HH----HH-----------------------------HH-----
T ss_conf ------------------------------------99----98-----------------------------76-----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 88833303589999999999999774549888500157887630898605799999999999799998999888885503
Q 000555 551 PTDEKNGNLYLSCLFFAVVHMMFNGFSELPIMITRLPVFYKQRDNYFHPAWAWSVASWILRVPYSVLEAVVWSCVVYFTV 630 (1427)
Q Consensus 551 ~~~~~~~~~~~g~lff~i~~~~~~~~~~l~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~ip~~~~~~~i~~~i~Y~~v 630 (1427)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 86786467999999999999999999999998613578899988999999997761212679924588999877699999
Q 000555 631 GFAPETGRFFRHMFLLFSLHQMALGLFRMMASIARDMVVANTFASSSLLIVFLMGGFIIPKESIKPWWSWAYWVSPLSYA 710 (1427)
Q Consensus 631 g~~~~~~~F~~~~l~l~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~W~~~isp~~ya 710 (1427)
.|+..
T Consensus 256 ------------------------------------------------------~~~~~--------------------- 260 (538)
T 1yqt_A 256 ------------------------------------------------------RGYLK--------------------- 260 (538)
T ss_dssp ------------------------------------------------------HTEET---------------------
T ss_pred ------------------------------------------------------HHCCC---------------------
T ss_conf ------------------------------------------------------40230---------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99999975125744444456665334410022356888741023377999999999899999997618577864212410
Q 000555 711 QSAISVNEFAAARWKKKSVIGDNTIGYNVLHTHSLPSGDYWYWIGVGALLLYSLLFNSVVTLALAYLNPLRKSQVVIDDK 790 (1427)
Q Consensus 711 ~~a~~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~ll~~~i~f~~l~~l~l~~~~~~~~~~~~~~~~ 790 (1427)
.. . . ...... ......
T Consensus 261 ----------~~-----~------~--------~~~~~~----------------------------~~~~~~------- 276 (538)
T 1yqt_A 261 ----------DE-----N------V--------RFRPYE----------------------------IKFTKT------- 276 (538)
T ss_dssp ----------TT-----T------E--------ECSSSC----------------------------CCCCCS-------
T ss_pred ----------HH-----H------H--------CCCCCC----------------------------CCCCCC-------
T ss_conf ----------02-----3------2--------034445----------------------------554557-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEE
Q ss_conf 13258765321012468999877766865677882379831146982751000138884343010240568848839999
Q 000555 791 EENSVKMAKQQFEINTTSAPESGKKKGMILPFQPLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTAL 870 (1427)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai 870 (1427)
.+. .. +.....++++|+++.++ . ..|+++++.+++||++||
T Consensus 277 ------------------~~~-~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i 317 (538)
T 1yqt_A 277 ------------------GER-VE------IERETLVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGI 317 (538)
T ss_dssp ------------------SGG-GS------SCCCEEEEECCEEEEET-------------T-EEEEECCEEEETTCEEEE
T ss_pred ------------------CCC-CC------CCCCEEEEEEEEEEEEC-------------C-EEEEECCCCCCCCCEEEE
T ss_conf ------------------765-56------67871899930799989-------------9-899907441289989999
Q ss_pred ECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 76899993578840418977862698999979137822223238887158888999999999999985128867998779
Q 000555 871 VGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQR 950 (1427)
Q Consensus 871 ~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~ 950 (1427)
+|+||||||||+++|+|...+ ..|+|.+ ...++|++|+....+.+||.|++........ . .
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~ 378 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---S 378 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---C
T ss_pred ECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCC----C---H
T ss_conf 889999999999999679989--9718998----------7469998267767888859999986403688----7---8
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCC
Q ss_conf 9999999999399643334234899988998888889999998619978898199999999999999999999885-898
Q 000555 951 HEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1029 (1427)
Q Consensus 951 ~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~ 1029 (1427)
.+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.++++++ .|.
T Consensus 379 ~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~ 453 (538)
T 1yqt_A 379 NFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453 (538)
T ss_dssp HHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999749915653994-----448999999999999997289989993980108999999999999999986798
Q ss_pred EEEEEECCCCHHHHHHHCEEEEEEC-CCEEEECCCCCC
Q ss_conf 9999955888889974165889916-919999057887
Q 000555 1030 TVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYGGKLGV 1066 (1427)
Q Consensus 1030 tvi~t~Hqps~~i~~~fD~i~~l~~-gg~~~~~G~~~~ 1066 (1427)
|||+++|++. .+...+|++++|.+ .|++...|++.+
T Consensus 454 tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 454 TALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp EEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 9999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=449.57 Aligned_cols=215 Identities=20% Similarity=0.265 Sum_probs=153.3
Q ss_pred CCEEEECEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CEEEEEECCEE
Q ss_conf 31011171678958759999759999789999---------------------999479899998----20199998861
Q 000555 166 SLTILNDVSGVVKPGRMTLLLGPPASGKSTLL---------------------LALAGKLDSSLK----KSGNITYNGYK 220 (1427)
Q Consensus 166 ~~~iL~~vs~~i~pG~lt~ilGp~GSGKSTLL---------------------~~L~G~l~~~~~----~~G~V~~nG~~ 220 (1427)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 684333342899726888-------------------8999999999999998308873324575443278884127999
Q 000555 221 LDEFHVQRTSAYISQTDN-------------------HIPELTVRETFDFAARWQGANEGFAAYINDLNRLEKERNIRPS 281 (1427)
Q Consensus 221 ~~~~~~~~~~aYV~Q~D~-------------------~~~~lTVrEtL~Fa~~~~~~~~~~~~~~~~l~~~e~~~~~~p~ 281 (1427)
... .+++.++|+.|... .++.+||+|++.+....... ..+... . .
T Consensus 110 ~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~------------~~~~~~--~-~ 173 (670)
T 3ux8_A 110 TSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT------------EKEAQI--A-R 173 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHC-CCHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC------------HHHHHH--H-H
T ss_conf 102-55000046511256677777531111234443334578599999975203643------------145677--8-8
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCC
Q ss_conf 028999864102787544318999999299654-46422464578889678689999999808994--879867998999
Q 000555 282 PEIDAFMKASSVGGKKHSVSTDYVLKVLGLDLC-SETVVGNDMIRGVSGGQKKRVTTGEMIVGPRK--TLFMDEISTGLD 358 (1427)
Q Consensus 282 ~~~d~~~ka~~~~~~~~~~~~~~vl~~lgL~~~-~dT~VG~~~~rgLSGGQKkRvsiA~aLv~~~~--illLDEpTSGLD 358 (1427)
... .+... .-..++.+||++. .|..++ .|||||||||+||++|+.+|+ +++|||||+|||
T Consensus 174 ~~~-----------~~~~~-~~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD 236 (670)
T 3ux8_A 174 LIL-----------REIRD-RLGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 236 (670)
T ss_dssp ----------------CHH-HHHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCC
T ss_pred HHH-----------HHHHH-HHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 889-----------99999-99899975984344149700-----18999999999999996289987899979856899
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCEEEE------ECCEEEEECCHHHHH
Q ss_conf 8979999999999987089689999337951577211709997------088389852967899
Q 000555 359 SSTTFQIVKCLRNFVHQMDATILMALLQPPPETFDLFDDLLLL------SEGHLVYQGPRAEVL 416 (1427)
Q Consensus 359 s~ta~~I~~~Lr~la~~~~~Tvi~sl~Qp~~e~~~lfD~IilL------~~G~ivy~Gp~~~~~ 416 (1427)
+.+...+++.|+++.. .+.|+|++.|.. +....+|++++| .+|++++.|+.+++.
T Consensus 237 ~~~~~~l~~~l~~l~~-~g~tvi~vtHd~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 237 QRDNDRLIATLKSMRD-LGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGGHHHHHHHHHHHHH-TTCEEEEECCCH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 9999999999999997-499899995787--999629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=444.07 Aligned_cols=216 Identities=22% Similarity=0.253 Sum_probs=166.8
Q ss_pred EEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 37983114698275100013888434301024056884883999976899993578840418977862698999979137
Q 000555 826 AMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 905 (1427)
Q Consensus 826 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 905 (1427)
.++++|++..+. ...|+.+++.+++||+++|+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 269 ~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~-- 330 (538)
T 3ozx_A 269 KMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ-- 330 (538)
T ss_dssp EEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC--
T ss_pred EEEECCEEEEEC--------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE--
T ss_conf 699823399979--------------8899826646889989999999999899999999578889--9818999984--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 82222323888715888899999999999998512886799877999999999993996433342348999889988888
Q 000555 906 EQSTFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRK 985 (1427)
Q Consensus 906 ~~~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrk 985 (1427)
.++|++|+....+..||+|++.+..... ... ....++++++.++|.+..+..+ ..|||||||
T Consensus 331 -------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 331 -------ILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp -------CEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred -------EEEEECHHCCCCCCCCHHHHHHHHHHHC----CCH--HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf -------5676140003454777999998755311----211--6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECC-CEEEECCC
Q ss_conf 89999998619978898199999999999999999999885-89899999558888899741658899169-19999057
Q 000555 986 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRG-GRVIYGGK 1063 (1427)
Q Consensus 986 rl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~~l~~g-g~~~~~G~ 1063 (1427)
|++||++|+.+|++|+|||||+|||..+...+++.++++++ .|.|||+++|++. ++...+|++++|..+ +.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 887702699999864
Q 000555 1064 LGVHSKTMIDYFQAL 1078 (1427)
Q Consensus 1064 ~~~~~~~~~~yF~~~ 1078 (1427)
+......+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=430.72 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=157.9
Q ss_pred EECCCEEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 0102405688488-----39999768999935788404189778626989999791378222232388871588889999
Q 000555 853 QLLSNVSGVFSPG-----VLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQNDIHSPQV 927 (1427)
Q Consensus 853 ~iL~~vs~~i~~G-----~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~~ 927 (1427)
..++++++.+++| |+++|+||||||||||+++|+|...+ ..|+ ... ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCC------CCC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--7885------866----77379860544445786
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999985128867998779999999999939964333423489998899888888999999861997889819999
Q 000555 928 TVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1007 (1427)
Q Consensus 928 Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTs 1007 (1427)
||+|++... .+ .... ....++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~--~~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IR--GQFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CS--STTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HH--CCCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--53--0324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEECCCCCCCCHHHHHHHHHCC
Q ss_conf 9999999999999999885-8989999955888889974165889916-9199990578877026999998648
Q 000555 1008 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKR-GGRVIYGGKLGVHSKTMIDYFQALD 1079 (1427)
Q Consensus 1008 gLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~i~~~fD~i~~l~~-gg~~~~~G~~~~~~~~~~~yF~~~~ 1079 (1427)
|||..+...+++.++++.. .|.|||+++|++. ++...+|++++|.. .|+++..|++.+--.....+...++
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~ 569 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 899999999999999999757998999968899-9998689999995898737742986998630468997548
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=344.45 Aligned_cols=215 Identities=28% Similarity=0.416 Sum_probs=178.7
Q ss_pred CCEEEEEEEEEEEECCCCHHCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 82379831146982751000138884343010240568848839999768999935788404189778626989999791
Q 000555 824 PLAMTFHNVNYYVDMPQAMRSQGIPEKKLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 903 (1427)
Q Consensus 824 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 903 (1427)
...++|+|++++++.. ++.++|+|+|+.++||+++||+||||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC-------CCCCCCCCCCC
Q ss_conf 3782---2223238887158888999999999999985128867998779999999999939-------96433342348
Q 000555 904 PKEQ---STFARISGYVEQNDIHSPQVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVE-------LDSLRDALVGF 973 (1427)
Q Consensus 904 ~~~~---~~~~~~~gyv~Q~d~~~~~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~-------L~~~~~~~vg~ 973 (1427)
+.+. ..+++.++||+|+..++ +.|++||+.|+. .+.++++ +.++.+..+ |.+-.||.||.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK-----EGITREE----MVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----TTCCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----CCCHHHH----HHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415-----5220999----999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 99988998888889999998619978898199999999999999999999885898999995588888997416588991
Q 000555 974 PGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1053 (1427)
Q Consensus 974 ~~~~~lSgGqrkrl~ia~~L~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~ 1053 (1427)
.|. .||||||||++|||+++++|+|++||||||+||+.++..+++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEECCCCC
Q ss_conf 691999905788
Q 000555 1054 RGGRVIYGGKLG 1065 (1427)
Q Consensus 1054 ~gg~~~~~G~~~ 1065 (1427)
+ |+++..|++.
T Consensus 627 ~-G~ive~Gth~ 637 (1321)
T 4f4c_A 627 N-GQVVEVGDHR 637 (1321)
T ss_dssp T-TEEEEEECHH
T ss_pred C-CEEECCCCHH
T ss_conf 9-9651368999
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=340.53 Aligned_cols=198 Identities=29% Similarity=0.464 Sum_probs=144.7
Q ss_pred EECCCEEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCC--CCC--EEE------EEEEECCCCCCCCC----
Q ss_conf 010240568848839999768999935788---------4041897--786--269------89999791378222----
Q 000555 853 QLLSNVSGVFSPGVLTALVGSSGAGKTTLM---------DVLAGRK--TGG--YIE------GDIKISGYPKEQST---- 909 (1427)
Q Consensus 853 ~iL~~vs~~i~~G~~~ai~G~sGaGKTTLl---------~~L~g~~--~~~--~~~------G~i~i~g~~~~~~~---- 909 (1427)
..|+|||+.+++|++++|+|+||||||||+ +.+.+.. .++ .+. +-+.+++.+.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred -----------------------------C-----------CCEEEEECCCCCCCC------------------------
Q ss_conf -----------------------------2-----------323888715888899------------------------
Q 000555 910 -----------------------------F-----------ARISGYVEQNDIHSP------------------------ 925 (1427)
Q Consensus 910 -----------------------------~-----------~~~~gyv~Q~d~~~~------------------------ 925 (1427)
| .+-.||+.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------999999999998512886799877999999999993996433342348999889988888899999986199
Q 000555 926 --------QVTVEESLWFSANLRLSKEVSKNQRHEFVEEVMRLVELDSLRDALVGFPGSSGLSTEQRKRLTIAVELVANP 997 (1427)
Q Consensus 926 --------~~Tv~e~l~~~a~l~~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~lSgGqrkrl~ia~~L~~~p 997 (1427)
.+||+|++.|.... .....+.++++.+||.... .|.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 6777877407799999987515---------0589999999981886333---1687-1579999999999999996287
Q ss_pred ---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEECCCCC
Q ss_conf ---78898199999999999999999999885898999995588888997416588991-----691999905788
Q 000555 998 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK-----RGGRVIYGGKLG 1065 (1427)
Q Consensus 998 ---~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~i~~~fD~i~~l~-----~gg~~~~~G~~~ 1065 (1427)
++++|||||+|||..+...+++.|+++++.|.|||+++|++ +....+|++++|. +||+++..|++.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 88978999798889999999999999999996699899993799--999729999996687777897899976999
Done!