Query 000556
Match_columns 1426
No_of_seqs 510 out of 5999
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:34:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000556.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_328-332//hhsearch_pdb/000556hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 670.3 51.1 783 163-1075 429-1304(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 606.2 55.0 786 164-1066 402-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 454.8 34.8 436 166-1068 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 448.8 44.0 427 165-1065 448-981 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 446.4 31.5 436 166-1068 36-490 (538)
6 3ux8_A Excinuclease ABC, A sub 1.0 1 1 442.1 35.6 215 164-413 30-297 (670)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 435.3 33.3 216 828-1080 269-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 423.3 32.3 201 855-1080 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 337.0 19.7 214 826-1066 413-636 (1321)
10 3pih_A Uvrabc system protein A 1.0 1 1 334.4 35.7 196 856-1066 599-897 (916)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=670.26 Aligned_cols=783 Identities=19% Similarity=0.241 Sum_probs=395.6
Q ss_pred CCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCC
Q ss_conf 551574130578948849999859999589999999649899998200999968408998765---15999647888899
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIG 239 (1426)
Q Consensus 163 ~~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~---r~~aYV~Q~D~~~~ 239 (1426)
.+.++|+|+|+.++||++++|+||+|||||||+++|.|.+++. +|+|.+||+++++...+ +.++||+|++ |+.
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~-~Lf 504 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEP-ALF 504 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSC-CCC
T ss_pred CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCC-EEE
T ss_conf 9874333318862288278998058985778888754565164---486157996501125999850466658753-320
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999985451178832567699899864309999999689999986222335589999999919943234333475
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~ 319 (1426)
+.||||||.|+.. +.+.++..+|+...+. .|. +-.|++..||.||++
T Consensus 505 ~~TI~eNI~~g~~-------------------------~~~~~~v~~a~~~a~l-----~~~---i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 505 NCTIEENISLGKE-------------------------GITREEMVAACKMANA-----EKF---IKTLPNGYNTLVGDR 551 (1321)
T ss_dssp SEEHHHHHHTTCT-------------------------TCCHHHHHHHHHHTTC-----HHH---HHHSTTTTSSEESSS
T ss_pred CCCHHHHHHHHCC-------------------------CCHHHHHHHHHHHCCC-----HHH---HHCCCCCCCCEECCC
T ss_conf 7861678864155-------------------------2209999999987565-----468---870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEEC
Q ss_conf 56667866755899999971598474885799899989899999999997760498599999449004873059499962
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~ 399 (1426)
+. .||||||||++|||+++.+|++++||||||+||+.++..|.++|+++.+ ++|+|+.-|+ .++...+|+|++|+
T Consensus 552 G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHr--ls~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 552 GT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHR--LSTIRNADLIISCK 626 (1321)
T ss_dssp SC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSC--TTTTTTCSEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCC--HHHHHHCCEEEEEE
T ss_conf 88-7777787999999987259998998455446887899999999999847--9889997363--87898689899963
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHH--HCCCCCHHHH--HCCCCC---------CC--CCCCHHHHHHH
Q ss_conf 992999539666999998459989999994679976--1380000111--003699---------87--55799899999
Q 000556 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY--WTHKEK---------PY--RFVTVEEFAEA 464 (1426)
Q Consensus 400 ~G~ivy~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~--v~s~~~~~~~--~~~~~~---------~~--~~~~~~~~~~~ 464 (1426)
+|+|+++|+++++++- + ...++.... .....+.... ...... .. .....++....
T Consensus 627 ~G~ive~Gth~eL~~~-------~---g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQ-------Q---GLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNR 696 (1321)
T ss_dssp TTEEEEEECHHHHHTT-------T---CHHHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCEEECCCCHHHHHHH-------H---HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 9965136899999985-------3---27999999622122223323344332232111222223422222221102211
Q ss_pred HHHCCCCHH----HHHHHCCCCCCCCCC--CC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----
Q ss_conf 970600000----588513876666211--11-1247655675789999999999999410427899999999999----
Q 000556 465 FQSFHVGQK----ISDELRTPFDKSKSH--RA-ALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSV---- 533 (1426)
Q Consensus 465 ~~~s~~~~~----~~~~l~~~~~~~~~~--~~-~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~---- 533 (1426)
.+.+..... ..++........... .. .........+.+.. +...+..+..++..++...+.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~i~~~~~ 768 (1321)
T 4f4c_A 697 VRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEI--------LYHARPHALSLFIGMSTATIGGFIY 768 (1321)
T ss_dssp -------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHH--------HHHTGGGHHHHHHHHHHHHHGGGHH
T ss_pred HHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10132124567740257775315403899999999707863109999--------9998778999999999999999999
Q ss_pred ---HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHH--------HCCCHHHHH--HCCCCCCCH-
Q ss_conf ---99998765134578776555200478999999999--99999999997--------402315553--002888781-
Q 000556 534 ---ALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMV--MFNGLAEISMT--------IAKLPVFYK--QRDFRFFPP- 597 (1426)
Q Consensus 534 ---ali~gtvf~~~~~~~~~~~~~~~~~g~lFf~l~~~--~~~~~~~~~~~--------~~~~~vf~k--qr~~~~y~~- 597 (1426)
++.++...-....+.........+.+.+|..+... .+..+...... -.+..+|.+ .....|+..
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~ 848 (1321)
T 4f4c_A 769 PTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSP 848 (1321)
T ss_dssp HHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99999999999875179345566789999999999999999999999999999999999999999888734993332167
Q ss_pred ---HHHHHHHHHHH-------HHHHHHHHHHH--HHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf ---44799999998-------43999999877--5311000355787779999999999999999999999998-40321
Q 000556 598 ---WAYAIPSWILK-------IPISFLEVAVW--VFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAA-TGRSM 664 (1426)
Q Consensus 598 ---~ay~la~~i~~-------iP~~~~~~~i~--~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa-~~~s~ 664 (1426)
..-.+.....+ ++..+...+.. .++....+.+..++ .+.++ ......+..+... ..+..
T Consensus 849 ~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~------~l~lv--~l~~~~~~~~~~~~~~~~~ 920 (1321)
T 4f4c_A 849 QNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGW------QMALL--IIAILPIVAFGQYLRGRRF 920 (1321)
T ss_dssp GGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCH------HHHHH--HHHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHH------HHHHH--HHHHHHHHHHHHHHHHHHH
T ss_conf 888488885025059999999999999999986537777022137868------99999--9998889999999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCC--------------C---
Q ss_conf 01025333211103456446999999999998725986543478875431578763068444--------------4---
Q 000556 665 VVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFA--------------H--- 727 (1426)
Q Consensus 665 ~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~--------------~--- 727 (1426)
. ......... .-....+..+++. |...++.++... .
T Consensus 921 ~-~~~~~~~~~------~~~~~~~~~e~l~--------------------gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 921 T-GKNVKSASE------FADSGKIAIEAIE--------------------NVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp S-SCSTTTSSH------HHHHHHHHHHHHH--------------------THHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHH------HHHHHHHHHHHHH--------------------HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9-999999999------8889889999996--------------------279888614148899999999999999999
Q ss_pred --CHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCC-CCCC--EEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --0378897989--99999999999999998205467-8850--1103-4322211111123332345788887666777
Q 000556 728 --AYWYWLGLGA--LFGFILLFNLGFTMAITFLNQLE-KPRA--VITE-ESESNKQDNRIRGTVQLSARGESGEDISGRN 799 (1426)
Q Consensus 728 --~~~~w~~~g~--l~~~~v~f~~~~~lal~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 799 (1426)
..+.....+. .+.+ +...+.+++.......-. .... .... -..... ......................+
T Consensus 974 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~a~~r- 1050 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLY-LLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITIS-TSTLGFATSYFPEYAKATFAGGI- 1050 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTT-TSSTTGGGGHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 999999999999999999-999999987578875376542147899999999877-88999999999999999999998-
Q ss_pred CCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCC
Q ss_conf 88510111002699998778666678822589320657733413431044568627844019999479089996468996
Q 000556 800 SSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879 (1426)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaG 879 (1426)
.........+.+.....+ ..+.....++|+||+++|+.. +...+|+|+|+.++|||++||+|+||||
T Consensus 1051 --i~~~l~~~~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsG 1117 (1321)
T 4f4c_A 1051 --IFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCG 1117 (1321)
T ss_dssp --HHHHHHCCCSSCTTCCCS-BCCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSS
T ss_pred --HHHHHHCCCCCCCCCCCC-CCCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCH
T ss_conf --999860766577766778-788888818999879857999----------9882124516998898999998999981
Q ss_pred HHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 467995351897786379999995902781---12242689960588889999999999998771299999988999999
Q 000556 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFI 956 (1426)
Q Consensus 880 KTTLl~~Lag~~~~~~~~G~i~i~g~~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v 956 (1426)
||||+++|.|... +.+|+|.+||.+.+. ..+++.++||+|++.++. .|++||+.|+. .|.+.+ ++.+
T Consensus 1118 KSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~s----d~ei 1187 (1321)
T 4f4c_A 1118 KSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVT----MAQV 1187 (1321)
T ss_dssp TTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSC----HHHH
T ss_pred HHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCC----HHHH
T ss_conf 9999999956863--899789999998654999999854599878997327-23999974549---999999----9999
Q ss_pred HHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 999999299421-------1122369998888998999899999996299857882999999999999999999998738
Q 000556 957 EEVMELVELKPL-------IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029 (1426)
Q Consensus 957 ~~vl~~l~L~~~-------~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~ 1029 (1426)
+++++..++.+. .|+.||..| .+||||||||++|||+|+++|+||+||||||+||+.++..|+++|++.. +
T Consensus 1188 ~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~ 1265 (1321)
T 4f4c_A 1188 EEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-E 1265 (1321)
T ss_dssp HHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-S
T ss_pred HHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C
T ss_conf 9999982984999717678999823889-1569999999999999971799899968111578999999999999973-9
Q ss_pred CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 9889999448877899630669899169399997699864137899
Q 000556 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLIS 1075 (1426)
Q Consensus 1030 g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~g~~~~~~~~ 1075 (1426)
|||+|+++|+.+. ...+|++++|++ |+++.+|.. .++++
T Consensus 1266 ~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth----~eLl~ 1304 (1321)
T 4f4c_A 1266 GRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH----TQLMS 1304 (1321)
T ss_dssp SSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH----HHHHH
T ss_pred CCEEEEECCCHHH--HHHCCEEEEEEC-CEEEEECCH----HHHHH
T ss_conf 9989996068999--996999999989-899998888----99984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=606.21 Aligned_cols=786 Identities=18% Similarity=0.228 Sum_probs=371.7
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 5157413057894884999985999958999999964989999820099996840899876---5159996478888999
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~---~r~~aYV~Q~D~~~~~ 240 (1426)
..++|+|+|+.++||+.++|+||+|||||||+++|+|.++|. +|+|.++|.++.+... ++.++||+|++.+++
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~- 477 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA- 477 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCC-
T ss_conf 871012545897599889998999997999999980788999---7389999998775799999865489868875377-
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999854511788325676998998643099999996899999862223355899999999199432343334755
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1426)
.||+||+.|+..- ...+.. .+++...+ ..|. +..|++..||.||+.+
T Consensus 478 ~ti~eNi~~g~~~----~~~~~~---------------------~~~~~~~~-----~~~~---i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 478 TTIAENIRYGRED----VTMDEI---------------------EKAVKEAN-----AYDF---IMKLPHQFDTLVGERG 524 (1284)
T ss_dssp SCHHHHHHHHCSS----CCHHHH---------------------HHHHHHTT-----CHHH---HHHSTTGGGCCCSSSS
T ss_pred CCHHHHHHCCCCC----CCHHHH---------------------HHHHHHHC-----CHHH---HHHCCCCCCCCCCCCC
T ss_conf 6699997457989----999999---------------------99999829-----6999---9746563345014787
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 66678667558999999715984748857998999898999999999977604985999994490048730594999629
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~ 400 (1426)
. .||||||||++|||+++.+|++++||||||+||+.+...|.+.++... .++|+++ +.|... +...+|+|++|++
T Consensus 525 ~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~-~i~~~d~i~vl~~ 599 (1284)
T 3g5u_A 525 A-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRLS-TVRNADVIAGFDG 599 (1284)
T ss_dssp C-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCHH-HHTTCSEEEECSS
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHH-HHHCCCEEEEEEC
T ss_conf 8-659999999999999952999899979877779999999999999973--9998999-940778-9974998999989
Q ss_pred CEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH--HH--HCCCCCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 9299953966699999845998999999467997613800001--11--0036998755799899999970600000588
Q 000556 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQK--QY--WTHKEKPYRFVTVEEFAEAFQSFHVGQKISD 476 (1426)
Q Consensus 401 G~ivy~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 476 (1426)
|+++++|+++++++- .| ...+............ .. ....................... .....
T Consensus 600 G~i~~~g~~~~l~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 666 (1284)
T 3g5u_A 600 GVIVEQGNHDELMRE---KG-------IYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRR---RSTRK 666 (1284)
T ss_dssp SCCCCEECHHHHHHT---TS-------HHHHHHHHTC-------------------------------------------
T ss_pred CEEEEECCHHHHHHC---CC-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCC
T ss_conf 999997889999867---87-------799999974300221113333332222234433333333200034---54333
Q ss_pred HHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHHH---HHCC
Q ss_conf 5138766--66211111247655675789999999999999410427899999999-------9999999876---5134
Q 000556 477 ELRTPFD--KSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQI-------SSVALAFMTL---FLRT 544 (1426)
Q Consensus 477 ~l~~~~~--~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~-------~~~ali~gtv---f~~~ 544 (1426)
....+.+ ................+.+..++.. ++.+..+...++.. .....+++.+ +...
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 738 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKLN--------STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHHH--------HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4456422332110245553136625899999984--------51579999999999999999999999999999998556
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH--HHHH--------HHHHHHCCCHHHHHH--CCCCCCC----HHHHHHHHHHHH
Q ss_conf 57877655520047899999999999--9999--------999974023155530--0288878----144799999998
Q 000556 545 KMHKHSLTDGGIYAGALFFATAMVMF--NGLA--------EISMTIAKLPVFYKQ--RDFRFFP----PWAYAIPSWILK 608 (1426)
Q Consensus 545 ~~~~~~~~~~~~~~g~lFf~l~~~~~--~~~~--------~~~~~~~~~~vf~kq--r~~~~y~----~~ay~la~~i~~ 608 (1426)
. ..........+...++..+....+ ..+. +....-.+..+|.+- ....||. +....+.....+
T Consensus 739 ~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D 817 (1284)
T 3g5u_A 739 G-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLAND 817 (1284)
T ss_dssp C-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHH
T ss_conf 8-503367799999999999999999999999999999999999999999999998399888757899889999999999
Q ss_pred -----------HHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCC
Q ss_conf -----------439999998775311000355787779999999999999999999999998403210102533321110
Q 000556 609 -----------IPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWW 677 (1426)
Q Consensus 609 -----------iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~ip~~~ 677 (1426)
++..+...........++..+.+...-.....+.+++... ....+.+.......
T Consensus 818 ~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~--~~~~~~~~~~~~~~------------- 882 (1284)
T 3g5u_A 818 AAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAG--VVEMKMLSGQALKD------------- 882 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-------------
T ss_conf 999999999999999999999999999999996999999999999999999--99999999999999-------------
Q ss_pred HHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 345644699999999999872598654347887543157876306844---440378897989999999999-9999999
Q 000556 678 KWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFF---AHAYWYWLGLGALFGFILLFN-LGFTMAI 753 (1426)
Q Consensus 678 ~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~---~~~~~~w~~~g~l~~~~v~f~-~~~~lal 753 (1426)
--.+...+....|..........-+.....-..+-...... ......|.+ ...++..... +...+.+
T Consensus 883 -------~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 953 (1284)
T 3g5u_A 883 -------KKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFG--ITFSFTQAMMYFSYAAAF 953 (1284)
T ss_dssp -------HHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf -------99999999999999988999998465999999999999999999999999999--999999999999999999
Q ss_pred HHCCCCCCCCCEEECCCCCC--C---CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 82054678850110343222--1---11-111233323457888876667778851011100269999877866667882
Q 000556 754 TFLNQLEKPRAVITEESESN--K---QD-NRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPH 827 (1426)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1426)
.+........ ..+...... . .. .....................+ .........+.......+...+....
T Consensus 954 ~~g~~lv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r---i~~~l~~~~~~~~~~~~~~~~~~~~g 1029 (1284)
T 3g5u_A 954 RFGAYLVTQQ-LMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH---IIRIIEKTPEIDSYSTQGLKPNMLEG 1029 (1284)
T ss_dssp HHHHCCCSSS-CSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH---HHHHHHSCCSSSSCCSSCCCTTTTSC
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999909-8069999999999999999999999999999999999999---99998388766665556654567778
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.++..+ ...+|+|+|+.++|||++||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1030 ~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred CEEEEEEEEECCCCC----------CCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 579999899779999----------8700203059976998899988999978999999946867--8997798999980
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 81---1224268996058888999999999999877129999998899999999999929942-------1112236999
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGLPG 977 (1426)
Q Consensus 908 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vG~~~ 977 (1426)
+. ...++.++||+|++.++ ..||+||+.+.... ...+.+ .+++.++..++.+ -.|+.+|..+
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred CCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCC
T ss_conf 0078999970268987787406-66699997466877---899999----999999983959999727042456117888
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88889989998999999962998578829999999999999999999987389889999448877899630669899169
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 978 ~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~g 1057 (1426)
..||||||||++|||+|+.+|+||+|||||+|||..++..|++.+++. ..|+|||+++|+++. + ..+|++++|++
T Consensus 1170 -~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~- 1244 (1284)
T 3g5u_A 1170 -TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQN- 1244 (1284)
T ss_dssp -CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEET-
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHH-H-HCCCEEEEEEC-
T ss_conf -933899999999999997499999986875557999999999999986-799989999558799-9-80998999989-
Q ss_pred CEEEEECCC
Q ss_conf 399997699
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 G~~vy~Gp~ 1066 (1426)
|+++..|+.
T Consensus 1245 G~i~~~g~~ 1253 (1284)
T 3g5u_A 1245 GKVKEHGTH 1253 (1284)
T ss_dssp BEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=454.80 Aligned_cols=436 Identities=23% Similarity=0.272 Sum_probs=309.7
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 57413057894884999985999958999999964989999820099---------9968408998-----765159996
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV---------TYNGHDMGEF-----VPERTAAYI 231 (1426)
Q Consensus 166 ~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V---------~~nG~~~~~~-----~~~r~~aYV 231 (1426)
.+|+++| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47888899---999999999854511788325676998998643099999996899999862223355899999999199
Q 000556 232 SQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1426)
Q Consensus 232 ~Q~D~~~~---~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL 308 (1426)
.|.....+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 43234333475566678667558999999715984748857998999898999999999977604985999994490048
Q 000556 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1426)
Q Consensus 309 ~~~~dT~VG~~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei 388 (1426)
++..|..++ .|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++.. .+.|+|+ +.|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIi-vsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLV-VEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6998999-96485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 73059499962992999539666999998459989999994679976138000011100369987557998999999706
Q 000556 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSF 468 (1426)
Q Consensus 389 ~~lFD~IilL~~G~ivy~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 468 (1426)
..++|+|++|.++...| |.. ..+. ..
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~~---~~---------- 317 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKPK---GT---------- 317 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCCE---EH----------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCCH---HH----------
T ss_conf 86589999977986445-212----------------------------------------2413---27----------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00000588513876666211111247655675789999999999999410427899999999999999987651345787
Q 000556 469 HVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHK 548 (1426)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtvf~~~~~~~ 548 (1426)
+.... .+.......
T Consensus 318 ------------------------------------------~~~i~------------------------~~~~~~~~~ 331 (607)
T 3bk7_A 318 ------------------------------------------RNGIN------------------------EFLQGYLKD 331 (607)
T ss_dssp ------------------------------------------HHHHH------------------------HHHHTEETT
T ss_pred ------------------------------------------HHHHH------------------------HHHHHCCHH
T ss_conf ------------------------------------------99999------------------------997510134
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
Q ss_conf 76555200478999999999999999999974023155530028887814479999999843999999877531100035
Q 000556 549 HSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1426)
Q Consensus 549 ~~~~~~~~~~g~lFf~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1426)
. ..
T Consensus 332 ~---~~-------------------------------------------------------------------------- 334 (607)
T 3bk7_A 332 E---NV-------------------------------------------------------------------------- 334 (607)
T ss_dssp T---TE--------------------------------------------------------------------------
T ss_pred H---HH--------------------------------------------------------------------------
T ss_conf 5---54--------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 57877799999999999999999999999984032101025333211103456446999999999998725986543478
Q 000556 629 CDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTP 708 (1426)
Q Consensus 629 l~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~ 708 (1426)
.
T Consensus 335 ---------------------------------------------------------------------------~---- 335 (607)
T 3bk7_A 335 ---------------------------------------------------------------------------R---- 335 (607)
T ss_dssp ---------------------------------------------------------------------------E----
T ss_pred ---------------------------------------------------------------------------H----
T ss_conf ---------------------------------------------------------------------------3----
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87543157876306844440378897989999999999999999982054678850110343222111111233323457
Q 000556 709 NSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSAR 788 (1426)
Q Consensus 709 ~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~lal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1426)
.+. . .. . .
T Consensus 336 ------------~~~---~------------------------------~~--------------------~----~--- 343 (607)
T 3bk7_A 336 ------------FRP---Y------------------------------EI--------------------R----F--- 343 (607)
T ss_dssp ------------CCS---S------------------------------CC--------------------C----C---
T ss_pred ------------CCC---C------------------------------CC--------------------C----C---
T ss_conf ------------012---1------------------------------23--------------------4----5---
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 88887666777885101110026999987786666788225893206577334134310445686278440199994790
Q 000556 789 GESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGV 868 (1426)
Q Consensus 789 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~ 868 (1426)
.. . .. . .. ......++++|+++.+. . ..|+++++.+++||
T Consensus 344 -----~~------~-------~~-~-~~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Ge 383 (607)
T 3bk7_A 344 -----TK------L-------SE-R-VD------VERETLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGE 383 (607)
T ss_dssp -----CC------S-------TT-S-CC------CCCCEEEEECCEEEECS-------------S-CEEEECCEEEETTC
T ss_pred -----CC------C-------CC-C-CC------CCCCEEEEEECEEEEEC-------------C-EEEEECCCCCCCCC
T ss_conf -----65------7-------77-5-44------46752899913098744-------------3-48993515327998
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 89996468996467995351897786379999995902781122426899605888899999999999987712999999
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 948 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 948 (1426)
.+||+||||||||||+++|+|... +.+|+|.+ .+.++|++|+....+.+||.|.+........
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~----- 446 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL----- 446 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCCCC-----
T ss_conf 999999999899999999966988--88628999----------0279998057667789849999975312587-----
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999299421112236999888899899989999999629985788299999999999999999999873
Q 000556 949 SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1426)
Q Consensus 949 ~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~ 1028 (1426)
...+.++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.|+++++
T Consensus 447 --~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 519 (607)
T 3bk7_A 447 --NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519 (607)
T ss_dssp --HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf --78999999998769933754992-----23799999999999999748998999687447899999999999999997
Q ss_pred -CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf -8988999944887789963066989916-939999769986
Q 000556 1029 -TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGR 1068 (1426)
Q Consensus 1029 -~g~Tvi~t~Hqps~~i~~~fD~l~ll~~-gG~~vy~Gp~g~ 1068 (1426)
.|.|||+++|+.. ++...+|++++|+. .|+.+..|++.+
T Consensus 520 ~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 520 KNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 47989999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=448.76 Aligned_cols=427 Identities=21% Similarity=0.283 Sum_probs=303.8
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCH
Q ss_conf 15741305789488499998599995899999996498999982009999684089987651599964788-88999999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD-NHIGEMTV 243 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~D-~~~~~lTV 243 (1426)
+.+|+|+|+.+++|+.++|+|||||||||||++|+| |+| +|.+... ....+|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 999998545117883256769989986430999999968999998622233558999999991994-3234333475566
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEMIR 322 (1426)
Q Consensus 244 rEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~-~~~dT~VG~~~~r 322 (1426)
.|++.+ ...+ . ...++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--HHCC--H-------------------------------------HHHHHHHHHHCCCCHHHHCCCCC-----
T ss_conf 999998--6127--9-------------------------------------99999999986998446439802-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCE
Q ss_conf 67866755899999971598474885799899989899999999997760498599999449004873059499962992
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 gLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G~ 402 (1426)
.||||||||+.||++++.+|++++|||||+|||..+...+.+.|++ .+.|+|+ +.|...++.+.+|+|++|.+|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCE
T ss_conf 0799999999999999649999999797667999999999999986----7998999-9798899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 99-95396669999984599899999946799761380000111003699875579989999997060000058851387
Q 000556 403 IV-YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTP 481 (1426)
Q Consensus 403 iv-y~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~ 481 (1426)
++ |.|+.+++... .| ....
T Consensus 623 iv~~~G~~~e~~~~-------~~----------------~~~~------------------------------------- 642 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK-------CP----------------AAKA------------------------------------- 642 (986)
T ss_dssp EEEEESCHHHHHHH-------CG----------------GGGG-------------------------------------
T ss_pred EECCCCCHHHHHHH-------HH----------------HHHH-------------------------------------
T ss_conf 42677999999861-------48----------------8999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 66662111112476556757899999999999994104278999999999999999876513457877655520047899
Q 000556 482 FDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGAL 561 (1426)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtvf~~~~~~~~~~~~~~~~~g~l 561 (1426)
+ + ........ .
T Consensus 643 ---------------~--------------------------------------------~--~l~~~~~~-~------- 653 (986)
T 2iw3_A 643 ---------------Y--------------------------------------------E--ELSNTDLE-F------- 653 (986)
T ss_dssp ---------------S--------------------------------------------S--STTTCCCC-C-------
T ss_pred ---------------H--------------------------------------------H--HHHHHHHH-C-------
T ss_conf ---------------9--------------------------------------------8--64454432-0-------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHH
Q ss_conf 99999999999999999740231555300288878144799999998439999998775311000355787779999999
Q 000556 562 FFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYL 641 (1426)
Q Consensus 562 Ff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l 641 (1426)
T Consensus 654 -------------------------------------------------------------------------------- 653 (986)
T 2iw3_A 654 -------------------------------------------------------------------------------- 653 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 99999999999999999840321010253332111034564469999999999987259865434788754315787630
Q 000556 642 LFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKS 721 (1426)
Q Consensus 642 ~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~ 721 (1426)
.+. .+
T Consensus 654 ------------------------------------------------------------~~p--~~------------- 658 (986)
T 2iw3_A 654 ------------------------------------------------------------KFP--EP------------- 658 (986)
T ss_dssp ------------------------------------------------------------CCC--CC-------------
T ss_pred ------------------------------------------------------------CCC--CC-------------
T ss_conf ------------------------------------------------------------356--55-------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68444403788979899999999999999999820546788501103432221111112333234578888766677788
Q 000556 722 RGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSS 801 (1426)
Q Consensus 722 ~~~~~~~~~~w~~~g~l~~~~v~f~~~~~lal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 801 (1426)
+. .
T Consensus 659 -~~----------------------------------------------------------------------~------ 661 (986)
T 2iw3_A 659 -GY----------------------------------------------------------------------L------ 661 (986)
T ss_dssp -CC----------------------------------------------------------------------C------
T ss_pred -CC----------------------------------------------------------------------C------
T ss_conf -54----------------------------------------------------------------------3------
Q ss_pred CCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHH
Q ss_conf 51011100269999877866667882258932065773341343104456862784401999947908999646899646
Q 000556 802 SKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881 (1426)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKT 881 (1426)
. . . ... ...-+.++|+++.++. ..+.+|+++|+.+++|+.+||+|+||||||
T Consensus 662 ~-------~--~--~~~------~~~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKS 713 (986)
T 2iw3_A 662 E-------G--V--KTK------QKAIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKS 713 (986)
T ss_dssp T-------T--C--CST------TSEEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHH
T ss_pred C-------C--C--CCC------CCCEEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCHH
T ss_conf 3-------4--5--667------8706999846998189-----------874134322799828978999899998799
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHHC------------CC-
Q ss_conf 79953518977863799999959027811224268996058888----99999999999987712------------99-
Q 000556 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH----SPFVTVYESLLYSAWLR------------LP- 944 (1426)
Q Consensus 882 TLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~----~~~lTv~E~l~f~a~lr------------~~- 944 (1426)
||+++|+|... +.+|+|.++|. ..++|++|+..+ ....|++|.+.+.-... ..
T Consensus 714 TLLklLaGll~--P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ 783 (986)
T 2iw3_A 714 TLINVLTGELL--PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE 783 (986)
T ss_dssp HHHHHHTTSSC--CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCS
T ss_pred HHHHHHHCCCC--CCCEEEEECCC--------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCH
T ss_conf 99999957988--88608998686--------425763130243321001147999988775045025555433210343
Q ss_pred C---------------------------------------------------CC--------C-----------------
Q ss_conf 9---------------------------------------------------99--------9-----------------
Q 000556 945 P---------------------------------------------------EV--------D----------------- 948 (1426)
Q Consensus 945 ~---------------------------------------------------~~--------~----------------- 948 (1426)
. .. +
T Consensus 784 ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~ 863 (986)
T 2iw3_A 784 NDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDM 863 (986)
T ss_dssp SCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55544200011232012344445554312220021000255432000001234323443210167776667665544324
Q ss_pred ---------HHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf ---------8899999999999929942-1-1122369998888998999899999996299857882999999999999
Q 000556 949 ---------SETRKMFIEEVMELVELKP-L-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017 (1426)
Q Consensus 949 ---------~~~~~~~v~~vl~~l~L~~-~-~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~ 1017 (1426)
.....+.++++++.+||.. . .+..+ +.||||||||+.||++|+.+|++|+|||||+|||..+..
T Consensus 864 ~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~ 938 (986)
T 2iw3_A 864 KEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 938 (986)
T ss_dssp HHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 555430223234799999999976998054448980-----423999999999999998399999997986577999999
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 999999998738988999944887789963066989916939999769
Q 000556 1018 IVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 1018 ~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp 1065 (1426)
.+++.|++. +.|||+++|++. .+...+|++++|.+ |+++..|+
T Consensus 939 ~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 939 ALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred HHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 999999974---997999979899-99985899999989-99998687
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=446.40 Aligned_cols=436 Identities=22% Similarity=0.268 Sum_probs=308.0
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 57413057894884999985999958999999964989999820099---------9968408998-----765159996
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRV---------TYNGHDMGEF-----VPERTAAYI 231 (1426)
Q Consensus 166 ~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V---------~~nG~~~~~~-----~~~r~~aYV 231 (1426)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... ..+..++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47888899---999999999854511788325676998998643099999996899999862223355899999999199
Q 000556 232 SQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1426)
Q Consensus 232 ~Q~D~~~~---~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL 308 (1426)
.|+....+ ..||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 43234333475566678667558999999715984748857998999898999999999977604985999994490048
Q 000556 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1426)
Q Consensus 309 ~~~~dT~VG~~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei 388 (1426)
++..|..++ .|||||||||.||++++.+|++|+|||||++||..+...+++.|+++.. .+.|+|+ +.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~-vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLV-VEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-ECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-5987999-94788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 73059499962992999539666999998459989999994679976138000011100369987557998999999706
Q 000556 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSF 468 (1426)
Q Consensus 389 ~~lFD~IilL~~G~ivy~Gp~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 468 (1426)
..++|+|++|.+|...| |.. ..++. .
T Consensus 222 ~~~~dri~vl~~~~~~~-~~~----------------------------------------~~~~~---~---------- 247 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVY-GIF----------------------------------------SQPKG---T---------- 247 (538)
T ss_dssp HHHCSEEEEEEEETTTE-EEE----------------------------------------CCCEE---H----------
T ss_pred HHHCCEEEEECCCCCCC-CCC----------------------------------------CCHHH---H----------
T ss_conf 97688999986863244-022----------------------------------------55355---8----------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00000588513876666211111247655675789999999999999410427899999999999999987651345787
Q 000556 469 HVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHK 548 (1426)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtvf~~~~~~~ 548 (1426)
+..+ . . +.. +...
T Consensus 248 ------------------------------------------~~~~----------~--------~------~~~-~~~~ 260 (538)
T 1yqt_A 248 ------------------------------------------RNGI----------N--------E------FLR-GYLK 260 (538)
T ss_dssp ------------------------------------------HHHH----------H--------H------HHH-TEET
T ss_pred ------------------------------------------HHHH----------H--------H------HHH-HCCC
T ss_conf ------------------------------------------9999----------9--------8------764-0230
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
Q ss_conf 76555200478999999999999999999974023155530028887814479999999843999999877531100035
Q 000556 549 HSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1426)
Q Consensus 549 ~~~~~~~~~~g~lFf~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1426)
. ...
T Consensus 261 ~--~~~-------------------------------------------------------------------------- 264 (538)
T 1yqt_A 261 D--ENV-------------------------------------------------------------------------- 264 (538)
T ss_dssp T--TTE--------------------------------------------------------------------------
T ss_pred H--HHH--------------------------------------------------------------------------
T ss_conf 0--232--------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 57877799999999999999999999999984032101025333211103456446999999999998725986543478
Q 000556 629 CDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTP 708 (1426)
Q Consensus 629 l~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~ 708 (1426)
.
T Consensus 265 ---------------------------------------------------------------------------~---- 265 (538)
T 1yqt_A 265 ---------------------------------------------------------------------------R---- 265 (538)
T ss_dssp ---------------------------------------------------------------------------E----
T ss_pred ---------------------------------------------------------------------------C----
T ss_conf ---------------------------------------------------------------------------0----
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87543157876306844440378897989999999999999999982054678850110343222111111233323457
Q 000556 709 NSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSAR 788 (1426)
Q Consensus 709 ~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~lal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1426)
.... .. . ..
T Consensus 266 ------------~~~~---------------------------------~~------------~-------~~------- 274 (538)
T 1yqt_A 266 ------------FRPY---------------------------------EI------------K-------FT------- 274 (538)
T ss_dssp ------------CSSS---------------------------------CC------------C-------CC-------
T ss_pred ------------CCCC---------------------------------CC------------C-------CC-------
T ss_conf ------------3444---------------------------------55------------5-------45-------
Q ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCC
Q ss_conf 88887666777885101110026999987786666788225893206577334134310445686278440199994790
Q 000556 789 GESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGV 868 (1426)
Q Consensus 789 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~ 868 (1426)
.. . ... . +.....++.+|+++.+. . ..|+++++.+++||
T Consensus 275 ------~~-----~------~~~----~------~~~~~~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge 313 (538)
T 1yqt_A 275 ------KT-----G------ERV----E------IERETLVTYPRLVKDYG-------------S-FRLEVEPGEIKKGE 313 (538)
T ss_dssp ------CS-----S------GGG----S------SCCCEEEEECCEEEEET-------------T-EEEEECCEEEETTC
T ss_pred ------CC-----C------CCC----C------CCCCEEEEEEEEEEEEC-------------C-EEEEECCCCCCCCC
T ss_conf ------57-----7------655----6------67871899930799989-------------9-89990744128998
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 89996468996467995351897786379999995902781122426899605888899999999999987712999999
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 948 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 948 (1426)
++||+|+||||||||+++|+|... +.+|+|.+ ...++|++|+....+..||.|.+.........
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~---- 377 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN---- 377 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC----
T ss_conf 999988999999999999967998--99718998----------74699982677678888599999864036887----
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88999999999999299421112236999888899899989999999629985788299999999999999999999873
Q 000556 949 SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1426)
Q Consensus 949 ~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~ 1028 (1426)
..+.++++++.+++.+..+..+ ..||||||||+.||++|+.+|++|+|||||+|||..+...+++.|+++++
T Consensus 378 ---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~ 449 (538)
T 1yqt_A 378 ---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 449 (538)
T ss_dssp ---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ---8999999999749915653994-----44899999999999999728998999398010899999999999999998
Q ss_pred -CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf -8988999944887789963066989916-939999769986
Q 000556 1029 -TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGR 1068 (1426)
Q Consensus 1029 -~g~Tvi~t~Hqps~~i~~~fD~l~ll~~-gG~~vy~Gp~g~ 1068 (1426)
.|.|||+++|+.. ++...+|++++|+. .|+.+..|++.+
T Consensus 450 ~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 450 KNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 67989999939899-999968999999088315740489899
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=442.07 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=151.1
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CCEEEEEECCCC
Q ss_conf 51574130578948849999859999589999---------------------99964989999----820099996840
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLL---------------------LALAGKLDSSL----KVSGRVTYNGHD 218 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL---------------------~aLaG~l~~~~----~~~G~V~~nG~~ 218 (1426)
..++|+|||+.+++|++++|+||||||||||| +.+.|...++. ...|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 899876515999647888-------------------8999999999998545117883256769989986430999999
Q 000556 219 MGEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279 (1426)
Q Consensus 219 ~~~~~~~r~~aYV~Q~D~-------------------~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~ 279 (1426)
.... +++.++||.|... .++.+||+|++.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH------
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 96899999862223355899999999199432-34333475566678667558999999715984--7488579989998
Q 000556 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1426)
Q Consensus 280 d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~-~dT~VG~~~~rgLSGGQKkRvsiaeaLv~~~~--vLlLDEpTSGLDs 356 (1426)
.+... .+.... -.+++.+||++. .|..++ .|||||||||.||++|+.+|+ +|+|||||+|||.
T Consensus 172 -~~~~~-------~~~~~~-~~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -ARLIL-------REIRDR-LGFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -HHHHH-------HHHHHH-HHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf -88889-------999999-9899975984344149700-----189999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 989999999999776049859999944900487305949996------299299953966699
Q 000556 357 STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1426)
Q Consensus 357 ~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL------~~G~ivy~Gp~~~~~ 413 (1426)
.+...+++.|+++.. .+.|+|+ +.|... ....+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~-vtHd~~-~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIV-VEHDED-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEE-ECCCHH-HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEE-EECCHH-HHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-4998999-957879-99629989994466656698899740899986
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=435.31 Aligned_cols=216 Identities=21% Similarity=0.250 Sum_probs=169.7
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.+++++..+. . ..|+.+++.+++||+++|+|+||||||||+++|+|... +.+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECC---
T ss_conf 699823399979-------------8-89982664688998999999999989999999957888--9981899998---
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122426899605888899999999999987712999999889999999999992994211122369998888998999
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrk 987 (1426)
+.++|++|+....+..||+|++.+....... . ....++++++.++|.+..+..+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDALS---T---SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC---T---TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------EEEEEECHHCCCCCCCCHHHHHHHHHHHCCC---H---HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf ------4567614000345477799999875531121---1---6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECC
Q ss_conf 89999999629985788299999999999999999999873-89889999448877899630669899169-39999769
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG-GQEIYVGP 1065 (1426)
Q Consensus 988 RlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~l~ll~~g-G~~vy~Gp 1065 (1426)
|+.||++|+.+|++|+|||||+|||..+...+++.|+++++ .|.|||+++|+.. ++...+|++++|+.+ |.....|+
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 986413789998719
Q 000556 1066 LGRHSCQLISYFEAI 1080 (1426)
Q Consensus 1066 ~g~~~~~~~~yF~~~ 1080 (1426)
.......+..|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=423.28 Aligned_cols=201 Identities=18% Similarity=0.186 Sum_probs=157.6
Q ss_pred EEEEEEEEEEECC-----CEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 7844019999479-----08999646899646799535189778637999999590278112242689960588889999
Q 000556 855 VLLNGLSGAFRPG-----VLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 929 (1426)
Q Consensus 855 ~iL~~vs~~~~pG-----~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~l 929 (1426)
..++++|+.+++| |+++|+|+||||||||+++|+|.... .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999877129999998899999999999929942111223699988889989998999999962998578829999
Q 000556 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1426)
Q Consensus 930 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTs 1009 (1426)
||+|.+... .+. ... ....++++++.++|.+..+..+ ..||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999987-38988999944887789963066989916-939999769986413789998719
Q 000556 1010 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPLGRHSCQLISYFEAI 1080 (1426)
Q Consensus 1010 gLD~~sa~~i~~~l~~~~-~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~-gG~~vy~Gp~g~~~~~~~~yF~~~ 1080 (1426)
|||..+...+++.|++++ +.|.|||+++|+.. ++...+|++++|+. .|+.+..|++.+--.....+.+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=336.95 Aligned_cols=214 Identities=27% Similarity=0.380 Sum_probs=181.5
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 82258932065773341343104456862784401999947908999646899646799535189778637999999590
Q 000556 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1426)
Q Consensus 826 ~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 905 (1426)
...++|+|++|+++..+ ...+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~~----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRP----------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSST----------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCCC----------CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 87679998554079999----------8743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 2781---1224268996058888999999999999877129999998899999999999929942-------11122369
Q 000556 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGL 975 (1426)
Q Consensus 906 ~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vG~ 975 (1426)
+.+. ..+++.++||+|++.++ +.|++||+.|+. ++.+. +.++++++..++.+ -.|+.||.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK-----EGITR----EEMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----TTCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----CCCHH----HHHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415-----52209----99999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 99888899899989999999629985788299999999999999999999873898899994488778996306698991
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~ 1055 (1426)
.|. .||||||||++|||+++++|+|++||||||+||+.++..+++.++++. +|+|+|+++|+++. ...+|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHH--HHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-79889997363878--98689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 69399997699
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gG~~vy~Gp~ 1066 (1426)
+ |+++..|.-
T Consensus 627 ~-G~ive~Gth 636 (1321)
T 4f4c_A 627 N-GQVVEVGDH 636 (1321)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEECCCCH
T ss_conf 9-965136899
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=334.45 Aligned_cols=196 Identities=27% Similarity=0.390 Sum_probs=143.3
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHH---------HHHCCCCC--C--CEEE------EEEEECCCCCCCCC-----
Q ss_conf 84401999947908999646899646799---------53518977--8--6379------99999590278112-----
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM---------DVLSGRKT--G--GYIT------GNITISGYPKKQET----- 911 (1426)
Q Consensus 856 iL~~vs~~~~pG~~~al~G~sGaGKTTLl---------~~Lag~~~--~--~~~~------G~i~i~g~~~~~~~----- 911 (1426)
.|++||+.+++|++++|+|+||||||||+ +.+.+... + ..+. +.+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred CCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 33653128718959999925888815457777778999874034456665333355101142576315655665555643
Q ss_pred ----------------------------C-----------CCEEEEECCCCCCCC-------------------------
Q ss_conf ----------------------------2-----------426899605888899-------------------------
Q 000556 912 ----------------------------F-----------ARISGYCEQNDIHSP------------------------- 927 (1426)
Q Consensus 912 ----------------------------~-----------~~~~~yv~Q~d~~~~------------------------- 927 (1426)
| .+..||+.++....|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHCC
T ss_conf 02236788999861266877504555431111466644323676348774101676156322014643566655430156
Q ss_pred -------CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-
Q ss_conf -------999999999987712999999889999999999992994211122369998888998999899999996299-
Q 000556 928 -------FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP- 999 (1426)
Q Consensus 928 -------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p- 999 (1426)
.+||.|++.|.... .....+.++++.+||.... .|.+ ...||||||||+.||++|+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 777877407799999987515---------0589999999981886333---1687-15799999999999999962878
Q ss_pred --CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE-----CCCEEEEECCC
Q ss_conf --85788299999999999999999999873898899994488778996306698991-----69399997699
Q 000556 1000 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1426)
Q Consensus 1000 --~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~-----~gG~~vy~Gp~ 1066 (1426)
+||+|||||+|||..+...+++.|+++++.|.|||++.|++. ....+|++++|. +||+++..|+.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 89789997988899999999999999999966998999937999--9972999999668777789789997699
Done!