Query 000557
Match_columns 1423
No_of_seqs 359 out of 675
Neff 5.2
Searched_HMMs 46136
Date Mon Apr 1 19:12:09 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5602 SIN3 Histone deacetyla 100.0 3E-154 6E-159 1365.3 55.0 941 68-1421 118-1136(1163)
2 smart00761 HDAC_interact Histo 100.0 3.9E-43 8.5E-48 337.4 7.1 100 494-593 1-101 (102)
3 PF08295 Sin3_corepress: Sin3 100.0 3.1E-41 6.7E-46 326.5 7.9 100 494-593 1-100 (101)
4 KOG4204 Histone deacetylase co 100.0 4.9E-38 1.1E-42 345.7 18.0 159 74-232 15-197 (231)
5 KOG4204 Histone deacetylase co 99.8 8.2E-20 1.8E-24 202.0 17.5 178 157-430 14-193 (231)
6 COG5602 SIN3 Histone deacetyla 99.8 2.4E-19 5.2E-24 216.8 17.5 211 157-430 123-335 (1163)
7 PF02671 PAH: Paired amphipath 99.3 3.4E-12 7.4E-17 108.4 4.9 47 96-142 1-47 (47)
8 PF02671 PAH: Paired amphipath 99.2 1.4E-11 3.1E-16 104.7 5.9 47 180-226 1-47 (47)
9 PTZ00146 fibrillarin; Provisio 96.2 0.0075 1.6E-07 70.2 6.2 7 486-492 266-272 (293)
10 KOG3915 Transcription regulato 94.8 0.021 4.5E-07 68.2 3.5 11 180-190 201-211 (641)
11 KOG3973 Uncharacterized conser 94.5 0.039 8.4E-07 64.1 4.6 9 16-24 308-316 (465)
12 PLN03138 Protein TOC75; Provis 94.1 0.041 9E-07 71.3 4.0 29 382-412 282-310 (796)
13 KOG3915 Transcription regulato 93.6 0.062 1.3E-06 64.4 4.0 11 382-392 201-211 (641)
14 PHA00370 III attachment protei 93.2 0.3 6.6E-06 55.1 8.3 13 81-93 148-160 (297)
15 COG4371 Predicted membrane pro 93.2 0.35 7.6E-06 54.5 8.8 17 118-134 181-197 (334)
16 PLN03138 Protein TOC75; Provis 93.1 0.08 1.7E-06 68.7 4.3 13 199-211 183-195 (796)
17 PHA00370 III attachment protei 89.6 0.36 7.9E-06 54.5 4.2 16 161-176 257-272 (297)
18 COG4371 Predicted membrane pro 88.5 0.62 1.3E-05 52.7 5.0 17 200-216 179-195 (334)
19 KOG1596 Fibrillarin and relate 86.1 1.3 2.8E-05 50.4 5.8 14 484-497 288-301 (317)
20 KOG3074 Transcriptional regula 85.0 0.28 6E-06 54.9 0.0 17 70-86 24-40 (263)
21 PF02084 Bindin: Bindin; Inte 81.0 16 0.00034 41.4 11.4 9 127-135 137-145 (238)
22 PF04285 DUF444: Protein of un 73.3 4.4 9.6E-05 49.9 5.1 40 159-212 160-199 (421)
23 smart00157 PRP Major prion pro 72.8 8.8 0.00019 42.2 6.5 6 104-109 129-134 (217)
24 KOG1308 Hsp70-interacting prot 71.5 9.4 0.0002 45.8 6.9 35 95-130 336-376 (377)
25 PF13865 FoP_duplication: C-te 70.5 12 0.00026 35.6 6.2 27 73-99 37-67 (74)
26 KOG3074 Transcriptional regula 69.4 3 6.5E-05 47.1 2.2 10 184-193 71-80 (263)
27 cd07354 HN_L-delphilin-R1_like 67.3 18 0.0004 34.9 6.6 68 163-231 3-72 (80)
28 COG4174 ABC-type uncharacteriz 66.8 12 0.00027 43.3 6.4 29 83-111 83-111 (364)
29 PF05642 Sporozoite_P67: Sporo 66.8 8.2 0.00018 48.4 5.3 11 403-413 371-381 (727)
30 PRK10930 FtsH protease regulat 66.7 6 0.00013 48.9 4.3 16 382-397 302-317 (419)
31 PF05387 Chorion_3: Chorion fa 66.6 6.1 0.00013 44.8 3.9 17 78-94 70-86 (277)
32 cd07354 HN_L-delphilin-R1_like 65.7 18 0.0004 34.9 6.3 68 79-147 3-72 (80)
33 PF05642 Sporozoite_P67: Sporo 64.0 11 0.00023 47.4 5.6 7 374-380 363-369 (727)
34 PTZ00110 helicase; Provisional 63.7 16 0.00035 46.6 7.5 8 751-758 414-421 (545)
35 PF07655 Secretin_N_2: Secreti 61.9 10 0.00022 37.7 4.1 29 65-93 52-80 (98)
36 PRK04537 ATP-dependent RNA hel 60.2 15 0.00032 47.3 6.3 10 371-380 556-565 (572)
37 KOG3262 H/ACA small nucleolar 59.6 16 0.00034 40.3 5.3 18 213-230 127-144 (215)
38 KOG3875 Peroxisomal biogenesis 56.7 19 0.00042 42.5 5.7 13 203-215 180-192 (362)
39 PF07466 DUF1517: Protein of u 55.8 21 0.00046 42.2 6.1 19 199-217 138-156 (289)
40 PRK05325 hypothetical protein; 53.4 13 0.00027 45.8 3.8 18 160-177 145-162 (401)
41 PF04094 DUF390: Protein of un 50.8 24 0.00052 45.7 5.7 8 130-137 197-204 (828)
42 PF04228 Zn_peptidase: Putativ 48.6 17 0.00037 43.0 3.8 14 166-179 152-165 (292)
43 PF11867 DUF3387: Domain of un 47.1 62 0.0013 39.0 8.2 99 114-212 117-229 (335)
44 PRK05325 hypothetical protein; 46.4 20 0.00043 44.2 3.9 10 387-396 338-347 (401)
45 KOG0775 Transcription factor S 46.0 81 0.0018 37.0 8.3 27 82-108 63-91 (304)
46 PTZ00110 helicase; Provisional 41.8 42 0.00091 43.0 6.1 9 730-738 487-495 (545)
47 PF12174 RST: RCD1-SRO-TAF4 (R 41.7 64 0.0014 30.6 5.7 45 371-415 13-57 (70)
48 TIGR02877 spore_yhbH sporulati 40.4 27 0.00059 42.5 3.8 31 387-427 317-347 (371)
49 PF04094 DUF390: Protein of un 39.6 31 0.00067 44.8 4.3 6 142-147 165-170 (828)
50 KOG1456 Heterogeneous nuclear 38.8 25 0.00055 42.4 3.1 15 132-146 47-61 (494)
51 KOG1456 Heterogeneous nuclear 38.4 28 0.0006 42.1 3.4 27 400-428 359-385 (494)
52 KOG4462 WASP-interacting prote 38.3 25 0.00055 42.1 3.0 8 11-18 41-48 (437)
53 KOG0037 Ca2+-binding protein, 38.2 34 0.00074 38.8 3.9 16 161-176 115-130 (221)
54 KOG3570 MAPK-activating protei 36.4 32 0.0007 45.2 3.7 37 640-676 903-940 (1588)
55 PF08963 DUF1878: Protein of u 35.8 47 0.001 34.1 4.1 65 364-428 41-110 (113)
56 PF07466 DUF1517: Protein of u 33.4 66 0.0014 38.2 5.5 8 10-17 9-16 (289)
57 KOG3875 Peroxisomal biogenesis 33.3 2.6E+02 0.0057 33.6 10.0 8 102-109 150-157 (362)
58 KOG0775 Transcription factor S 33.1 44 0.00096 39.0 3.8 15 129-143 77-91 (304)
59 COG5324 Uncharacterized conser 29.7 62 0.0014 40.5 4.5 126 558-690 523-680 (758)
60 TIGR02877 spore_yhbH sporulati 28.2 62 0.0013 39.6 4.1 16 161-176 158-173 (371)
61 KOG3590 Protein kinase A ancho 27.4 1.1E+02 0.0025 37.6 6.0 17 90-106 116-132 (602)
62 PF09060 L27_N: L27_N; InterP 27.3 63 0.0014 28.6 2.8 28 1228-1256 2-29 (49)
63 KOG3543 Ca2+-dependent activat 25.7 4.2E+02 0.0091 34.5 10.4 19 524-542 623-641 (1218)
64 KOG3091 Nuclear pore complex, 25.2 1.1E+02 0.0023 38.7 5.4 7 500-506 324-330 (508)
65 cd07347 harmonin_N_like N-term 24.9 2.1E+02 0.0046 27.8 6.2 59 370-429 6-66 (78)
66 PF08349 DUF1722: Protein of u 24.8 1.5E+02 0.0032 30.5 5.6 50 368-417 54-103 (117)
67 KOG0339 ATP-dependent RNA heli 24.1 1.1E+02 0.0023 39.0 5.1 9 85-93 660-668 (731)
68 PF14181 YqfQ: YqfQ-like prote 23.8 72 0.0016 34.9 3.2 8 82-89 55-62 (161)
69 KOG0037 Ca2+-binding protein, 23.7 81 0.0018 36.0 3.7 26 95-121 56-81 (221)
70 PLN02705 beta-amylase 22.6 67 0.0015 41.4 3.1 12 1188-1199 557-568 (681)
71 PF11705 RNA_pol_3_Rpc31: DNA- 22.4 1.6E+02 0.0034 33.8 5.9 9 100-108 59-67 (233)
72 PF14775 NYD-SP28_assoc: Sperm 20.7 1.8E+02 0.0039 26.9 4.6 56 372-427 2-60 (60)
73 KOG3091 Nuclear pore complex, 20.4 1.3E+02 0.0028 38.0 4.9 7 382-388 265-271 (508)
No 1
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-154 Score=1365.25 Aligned_cols=941 Identities=29% Similarity=0.443 Sum_probs=689.9
Q ss_pred CCCCCCCccccchhhhhHHHHHHhhhcChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCCccccc
Q 000557 68 AGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEI 147 (1423)
Q Consensus 68 gg~~~~~~~~~~dAl~YL~~VK~~F~d~p~vY~~FLeIMkdfk~q~idt~gVi~rV~~LF~ghpdLI~GFN~FLP~gy~I 147 (1423)
......++|.|+||++||++||.+|..+|++|+.||+||+|||+|.||++|||+||+.||+|+|+||+|||+|||.||+|
T Consensus 118 p~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYki 197 (1163)
T COG5602 118 PPRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKI 197 (1163)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC--------------------------------------------CC-------------CCCccchHHHHHHHH
Q 000557 148 TLDEDE--------------------------------------------AP-------------PKKTVEFEEAITFVN 170 (1423)
Q Consensus 148 ~~~~de--------------------------------------------~p-------------p~~~vef~~Ai~fvn 170 (1423)
+++.+. || ++..++|++||.|||
T Consensus 198 e~S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vn 277 (1163)
T COG5602 198 EGSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVN 277 (1163)
T ss_pred EEecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHH
Confidence 874210 10 123478999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCcc--CCCCccccCCcccCC
Q 000557 171 KIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSL--SHNIPFVRNSTQRGN 248 (1423)
Q Consensus 171 KIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hPDLL~eF~~FLP~~~~~~~--~~~~~~~~~~n~~~~ 248 (1423)
+||.||+++|+.|..||++|+.|++.+++|.+||.+|+.||+++|||+++|..|||+...... +.++.. +
T Consensus 278 kVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~aq~---p----- 349 (1163)
T COG5602 278 KVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANAQK---P----- 349 (1163)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccccccccccccccCC---C-----
Confidence 999999999999999999999999999999999999999999999999999999999854432 111111 1
Q ss_pred CCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhcccCCCCccchhccccccc
Q 000557 249 ERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRD 328 (1423)
Q Consensus 249 ~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~d~s~~~P~~~~~~~~~~~~k~qr~~~~k~~~~r~~~~~~~~~~~~~~~~~ 328 (1423)
+..+|+.+.+...+.- +.++.+++. ...|.. ..+..+-| . +...+
T Consensus 350 --~~~lPPiG~Fs~p~~a-~~~~~ps~~-----~~~p~~----------------~~~~~~~r-~----------d~~~S 394 (1163)
T COG5602 350 --SKRLPPIGSFSLPTAA-PEQNRPSLL-----WESPRS----------------ISNISRYR-A----------DLLTS 394 (1163)
T ss_pred --cccCCCCCCCCCCCcc-cccCChHHh-----hcCcch----------------hccccccc-c----------chhhh
Confidence 2233444333222100 000000000 000000 00000000 0 00000
Q ss_pred cccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC-hHHHHHHHHHHHhhhcCCCCHHHHHH
Q 000557 329 FNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQN 407 (1423)
Q Consensus 329 ~~~q~~p~k~~~~~~~~~~g~~p~~~~~~~~~a~k~~~~~El~FFDKVKk~L~-~~~Y~eFLKcLnLYsqeII~r~ELv~ 407 (1423)
+..+-.|.+. . .|.+. ..++.-.||++||..|. ...|++||||||||+|+||++++||+
T Consensus 395 ~s~~~~P~~~---------~-~P~s~----------~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lve 454 (1163)
T COG5602 395 FSRNFVPIRI---------H-MPISH----------LSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVE 454 (1163)
T ss_pred hhhhcCCccc---------c-CCccc----------cCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 1011111111 0 12110 00112279999999999 99999999999999999999999999
Q ss_pred HHHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCccccccccchhhhhhhhhhHhhhhhhhhhhhhhccc
Q 000557 408 LVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSI 487 (1423)
Q Consensus 408 lV~~fLG~~PDLm~~Fk~FLg~~e~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~dr~~~~~~~~~ker~~~~~k~~~kp~ 487 (1423)
++-.|||.+.+||.|||+|++|.+... .| + +-
T Consensus 455 r~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~----------------~-------------~~ 486 (1163)
T COG5602 455 RLFAFLGSNEELIRWFKAFINYSEPEK-------------------EP----------------L-------------RE 486 (1163)
T ss_pred HHHHHhcCcHHHHHHHHHHhccCCCCC-------------------CC----------------c-------------cc
Confidence 999999999999999999999975210 00 0 01
Q ss_pred cccccCCCcccCCccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHHhhcccchhhHHHH
Q 000557 488 QELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDML 566 (1423)
Q Consensus 488 ~elDls~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~-t~~SED~~F~~~rKNqyEE~LfrcEDERfElD~~ 566 (1423)
...|++.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+|||+||||||||.+
T Consensus 487 ~~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~ 566 (1163)
T COG5602 487 TRKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRH 566 (1163)
T ss_pred cccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHH
Confidence 246888999999999999999999999999999999999999999 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCccccccc----hhHHHHHHHHhhC-CChHHHHHHHHhCcCcchhHHHHHHHH
Q 000557 567 LESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQ 641 (1423)
Q Consensus 567 IE~~~~ti~~Le~l~~~i~~~~~e~~~~~~l~~~l----~~i~~R~I~rIYG-d~g~evi~~l~knP~~alPVVL~RLKq 641 (1423)
||++.+||+.|+.++++|..|...++..+.|.++| .+||+++|++||| +||.+||++|+++|++|+||||+|||+
T Consensus 567 Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~ 646 (1163)
T COG5602 567 IEATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKM 646 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999888888766 5899999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhhcccCccccccccccccchhHHHHHHHHHHHhhhccchhHHHhhhCCCCCCCCC
Q 000557 642 KQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPH 721 (1423)
Q Consensus 642 K~eEWr~aq~e~nKvWrev~~Kny~KSLDHq~~~FKq~DkK~ls~K~Lv~EIe~i~ee~~~e~d~~~~~~~g~~~~~~p~ 721 (1423)
|++|||+|||+|||+||+|.+|||+|||||||++||+.|||.|++|.||.||+.++.++..- +. +....-+
T Consensus 647 Kd~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~---~~------~~k~~fq 717 (1163)
T COG5602 647 KDEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV---SI------DDKKVFQ 717 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee---ec------Cccccce
Confidence 99999999999999999999999999999999999999999999999999999766643211 10 1223458
Q ss_pred ceeecCChhHHHHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHhhhcccCCCCCCCCCCchhhhhccccCCCCCCCCCccc
Q 000557 722 LEYGYSDSNIHEDLYKLVQYSCEEMC-STKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVE 800 (1423)
Q Consensus 722 l~~~y~D~~I~~D~~~Li~~~~~~~~-~~~~~~~ki~~~~~~Fl~~ff~i~~~~~~~ed~ed~~~~~~~~~~~~~~~~~e 800 (1423)
+.|.|+|.-|+.|++.|..-..-.++ -...+++++...+.+||..||++-.-- -+..+-... .... +
T Consensus 718 f~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~~~-----i~~~~y~~~---~nv~----~ 785 (1163)
T COG5602 718 FVFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCIFR-----IIIIVYERL---LNVK----G 785 (1163)
T ss_pred eeeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhh-----hhhhhhhhh---cccc----c
Confidence 99999999999999998653322222 235788999999999999999843200 001111110 0000 0
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCccccccccccccccCCCcccccccccccccccccchhhhHHHhhhhccccccccc
Q 000557 801 SDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKR 880 (1423)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1423)
. |.+ |++ +.|..++.. .+|...
T Consensus 786 ~-------------------ni~-----------------g~k--------~~r~srs~~---~~q~~s----------- 807 (1163)
T COG5602 786 L-------------------NID-----------------GLK--------ADRSSRSDE---SAQRYS----------- 807 (1163)
T ss_pred c-------------------ccC-----------------Ccc--------cccccccch---hhhhHH-----------
Confidence 0 000 000 001111100 000000
Q ss_pred cchhhhhhccccccCCCCCCcccccCCCCCCCcccccCCCCCCCCCCCccccccccccCCCCCCCCCccccCCCCCcccc
Q 000557 881 SGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSGYGAASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLL 960 (1423)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 960 (1423)
. +. +| |- +-
T Consensus 808 -~-----------vk---------------------sg----------------------n~--~q-------------- 816 (1163)
T COG5602 808 -K-----------VK---------------------SG----------------------NL--EQ-------------- 816 (1163)
T ss_pred -H-----------hh---------------------cc----------------------cc--hh--------------
Confidence 0 00 00 00 00
Q ss_pred ccccccCCcccccccccCCCCCccccccCccCCCCCcccccccccccccccccccccCCccchhccccccccccccccCC
Q 000557 961 ENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGG 1040 (1423)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~k~ereegelsp~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1423)
+ .+-+++++ +
T Consensus 817 --------v--------------s~q~de~a-----i------------------------------------------- 826 (1163)
T COG5602 817 --------V--------------SKQIDEYA-----I------------------------------------------- 826 (1163)
T ss_pred --------c--------------ccCCchhH-----H-------------------------------------------
Confidence 0 00000000 0
Q ss_pred CCCCCCCccccCCccccCCCCCCCCCCCCccccchhhhhhcccccccCCcccccccccccccccccCCCCCCCCchhhhh
Q 000557 1041 ENDADADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFL 1120 (1423)
Q Consensus 1041 e~~~~ad~e~s~~~s~~~~~~s~~~s~~~e~s~~~~~~~~~~~~~~~d~k~es~gea~~~~~~~~~~~d~~~~~~~~~~~ 1120 (1423)
+|| ..+++ +| +... ..+.-.|.+. .
T Consensus 827 ------ede-------~k~p~--------hp--d~l~------------------------eh~~skgi~e----n---- 851 (1163)
T COG5602 827 ------EDE-------IKEPT--------HP--DGLK------------------------EHNISKGISE----N---- 851 (1163)
T ss_pred ------HHH-------hcCCC--------CC--chHH------------------------Hhhhhhccch----h----
Confidence 000 00000 00 0000 0000001000 0
Q ss_pred cccCcccccCCCCcccccCccceeeecCchHhHHHHHHHHHHHHHHHHhhchhhhhhcccCcCCCchHHHHHHHHHHHHh
Q 000557 1121 LSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNL 1200 (1423)
Q Consensus 1121 ~~~kpl~~~~~~~~~~~~~~~~~FygN~~~YvFfRL~qiLYeRL~~~K~~~~~~e~~~k~~~d~~~~~~Y~~fL~~l~~L 1200 (1423)
.+++ ....||||.++||||||+..+||||+.+|....+..+- .....-|...|.+|++|
T Consensus 852 ------ek~~---------i~~~~fgns~myvffrl~~~~yerLyeik~~~e~vti~------~~~~g~Yen~l~~s~rl 910 (1163)
T COG5602 852 ------EKQV---------IALTEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTIG------MMEPGHYENELWDSYRL 910 (1163)
T ss_pred ------hHHH---------HHHhhcccceeeeehhhhHhHHHHHHHHHHHHHHhhhh------hcccchhhhHHHHHHHH
Confidence 0111 12469999999999999999999999999766554321 12234899999999999
Q ss_pred hcCCCCchhhHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcCCC-cchhHHHHHHHHhhc
Q 000557 1201 LDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPG-KQIDSVYYENARVLL 1279 (1423)
Q Consensus 1201 ldG~iD~~~FED~lR~~fg~~aY~lFTiDKLI~~lvKQlq~ivsDe~~~~ll~L~~~Er~r~~~-~~~ei~Yr~~Ae~ll 1279 (1423)
+.|.+++.+||+.+|.+|++++|++||||||.++|+||+|+|++|.|...++.||....+..++ ...++.||..+|.+|
T Consensus 911 i~g~l~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l 990 (1163)
T COG5602 911 IFGALTPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLL 990 (1163)
T ss_pred HhccccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999776665543 468899999999777
Q ss_pred -CCCCEEEEEEecCCCeEEEEEecCC---cCCccccccCCchHHHHHhhhhhcccccCCC----CCCcccccCccccccC
Q 000557 1280 -HEENIYRIQLSSSPSRLSIQLMDNV---IEKPEAFAVTMDPNFAAYLLNDFLSAFLGKK----EPHAVVLRRNKRRFEG 1351 (1423)
Q Consensus 1280 -~DEniyrie~~~~~~~ltIqLld~~---~d~~e~~~~~~d~~w~~Yv~s~yv~~~pte~----~~~~vFL~RNl~~~~~ 1351 (1423)
+||+||||+|.+...++.||.|-.. .+++.++ ...|.+||+ +|.-.++||| ..+.|||.|||.+.+.
T Consensus 991 ~p~e~~Fr~~w~~~~k~~~Iq~~~~adLt~~~~~~~----~~~wkyYV~-sYai~h~TEgi~~~~~k~PFL~R~ie~~~~ 1065 (1163)
T COG5602 991 NPDEILFRFCWINKFKSFGIQIMKRADLTVDQSLDT----QRVWKYYVQ-SYAIQHLTEGISYKNYKCPFLCRNIEKERT 1065 (1163)
T ss_pred CchhheeeeeecchhheeeeeEeeccccccccccCh----HHHHHHHHH-hhccccccccCchhhccchHHHHHHHhhhh
Confidence 8999999999999999999999432 2222222 237999999 6888899998 3589999999987432
Q ss_pred chhhHH--HhhhccCceeecCcEEEEecCceeEEEEcCCceEEEEeccccchhhhhhhhhHHHHHHHHhhhc
Q 000557 1352 LDELSA--ACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLS 1421 (1423)
Q Consensus 1352 ~~e~~~--~~~~~~~v~v~~gLeckI~~~SyK~~Yv~~TED~f~R~~~~~~~~~~~~~~~~~~~~~f~~~~~ 1421 (1423)
.+.... .......-...+||+..+|+.|||++|.++|||..+-....+..- ..-..|++|.+|+++|++
T Consensus 1066 v~~l~s~~q~~l~~~h~~~s~lq~f~~~dt~k~~~~pnte~~yi~~s~l~~~~-s~fldcq~rk~~wr~We~ 1136 (1163)
T COG5602 1066 VEQLVSRLQTKLLRSHELVSGLQAFLCLDTFKLLYLPNTEDSYIDASYLRLRD-SDFLDCQKRKQRWRNWES 1136 (1163)
T ss_pred HHHHHhhhhHHHHHHHHHhccceeeeeeccceeeeccCCccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHH
Confidence 222100 001111224468999999999999999999999988666555111 112346789999999986
No 2
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=100.00 E-value=3.9e-43 Score=337.41 Aligned_cols=100 Identities=56% Similarity=0.862 Sum_probs=96.6
Q ss_pred CCcccCCccccCCCCCCCCCCCCccccccccccCeeeecccC-CCCcccchhccchhhHHHhhcccchhhHHHHHHHHHH
Q 000557 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSG-SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSS 572 (1423)
Q Consensus 494 ~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~t~~-SED~~F~~~rKNqyEE~LfrcEDERfElD~~IE~~~~ 572 (1423)
+|++||||||+|||+|+.++||||++||++||||+|||||+| |||++|++||||||||+|||||||||||||+||++.+
T Consensus 1 ~c~~~gpSYr~Lpk~~~~~~cSgR~~l~~~VLND~wvsvps~~SED~~F~~~rKNqyEE~Lfr~EDeR~E~D~~ie~~~~ 80 (102)
T smart00761 1 NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEALFRCEDERFELDMVIESNSS 80 (102)
T ss_pred CCcccCcchhhCCcccCCCCCCCccHHHHHHhCCceEeecCCcccccchhhhhccHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999766 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCC
Q 000557 573 TAKRAEELLNSINENKITLET 593 (1423)
Q Consensus 573 ti~~Le~l~~~i~~~~~e~~~ 593 (1423)
||++||+|+++|+.|+++++.
T Consensus 81 ti~~le~l~~~~~~~~~~e~~ 101 (102)
T smart00761 81 TIKLLEEILNKIEDMSDEERA 101 (102)
T ss_pred HHHHHHHHHHHHhcCChhhcc
Confidence 999999999999999887654
No 3
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=100.00 E-value=3.1e-41 Score=326.48 Aligned_cols=100 Identities=60% Similarity=0.914 Sum_probs=97.3
Q ss_pred CCcccCCccccCCCCCCCCCCCCccccccccccCeeeecccCCCCcccchhccchhhHHHhhcccchhhHHHHHHHHHHH
Q 000557 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSST 573 (1423)
Q Consensus 494 ~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~t~~SED~~F~~~rKNqyEE~LfrcEDERfElD~~IE~~~~t 573 (1423)
+|++||||||+||++|+.++||||++||++||||+|||||+||||++|++||||||||+|||||||||||||+||+|++|
T Consensus 1 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wvs~p~~sEd~~f~~~kKnqyEE~lf~~EDeR~E~D~~ie~~~~t 80 (101)
T PF08295_consen 1 NCERCGPSYRLLPKSYQNPPCSGRDELCWSVLNDTWVSVPSWSEDSSFKAMKKNQYEEALFRCEDERFELDMLIESNRST 80 (101)
T ss_pred CCCcCccchhhCCcccCCCCCCCCchhhhhhcCCEEEEeCCccccccccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 000557 574 AKRAEELLNSINENKITLET 593 (1423)
Q Consensus 574 i~~Le~l~~~i~~~~~e~~~ 593 (1423)
|+.|++|+++|..|+++++.
T Consensus 81 I~~Le~l~~~i~~~~~ee~~ 100 (101)
T PF08295_consen 81 IKLLEELQEKIQDMSPEERA 100 (101)
T ss_pred HHHHHHHHHHHhcCCHhHhc
Confidence 99999999999999987764
No 4
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-38 Score=345.75 Aligned_cols=159 Identities=63% Similarity=1.042 Sum_probs=148.0
Q ss_pred CccccchhhhhHHHHHHhhhcChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCCccccccCCCCC
Q 000557 74 QKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDE 153 (1423)
Q Consensus 74 ~~~~~~dAl~YL~~VK~~F~d~p~vY~~FLeIMkdfk~q~idt~gVi~rV~~LF~ghpdLI~GFN~FLP~gy~I~~~~de 153 (1423)
+.++++||++||++||.+|+++|++|++||+||+|||+++||++|||+||++||+|||+||+|||+|||+||+|+++.+.
T Consensus 15 ~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~~ 94 (231)
T KOG4204|consen 15 PALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSEA 94 (231)
T ss_pred CCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCccc
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999987431
Q ss_pred -------------CCCCCc-----------cchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 000557 154 -------------APPKKT-----------VEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVAS 209 (1423)
Q Consensus 154 -------------~pp~~~-----------vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~ 209 (1423)
.+++.. +++.+|++|+||||+||++++++|++||+||+||+++++++.+||++|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~y~~~~ks~~e~~~eV~~ 174 (231)
T KOG4204|consen 95 KDEFTIYGATSYLPSPKVAFHEEILKLLEDVEFDRAISFVNKLKTRFQGDDHVYKSFLEILRMYQEGNKSVSEVYQEVEA 174 (231)
T ss_pred ccccccccccccCCCccccccchhhhhcccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 123333 88999999999999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHhhhCCCCCCCc
Q 000557 210 LFEDHADLLEEFTRFLPDTSATS 232 (1423)
Q Consensus 210 LF~~hPDLL~eF~~FLP~~~~~~ 232 (1423)
||++|+||+.+|..|||......
T Consensus 175 L~~~~~DL~~ef~~~lp~~~~~~ 197 (231)
T KOG4204|consen 175 LLQGHEDLLEEFSHFLPTDPATG 197 (231)
T ss_pred HHccCHHHHHHHHhhccCCcccc
Confidence 99999999999999999985543
No 5
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.83 E-value=8.2e-20 Score=201.97 Aligned_cols=178 Identities=24% Similarity=0.434 Sum_probs=137.6
Q ss_pred CCccchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccCCC
Q 000557 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1423)
Q Consensus 157 ~~~vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hPDLL~eF~~FLP~~~~~~~~~~ 236 (1423)
...+++++|++||++||.+|+++|++|..||+||++|+.+.++..+|+++|+.||+||||||.+|+.|||..........
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999987654211
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000557 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1423)
Q Consensus 237 ~~~~~~~n~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~d~s~~~P~~~~~~~~~~~~k~qr~~~~k~~~~r~~~~~ 316 (1423)
+... ..++... ...|.+. .
T Consensus 94 ~~~~-----------~~~~~~~-----------------------~~~~~~~------------~--------------- 112 (231)
T KOG4204|consen 94 AKDE-----------FTIYGAT-----------------------SYLPSPK------------V--------------- 112 (231)
T ss_pred cccc-----------ccccccc-----------------------ccCCCcc------------c---------------
Confidence 1000 0000000 0000000 0
Q ss_pred ccchhccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHHh
Q 000557 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1423)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~p~k~~~~~~~~~~g~~p~~~~~~~~~a~k~~~~~El~FFDKVKk~L~--~~~Y~eFLKcLnL 394 (1423)
. ++ ... ...++. ..+.+++.|.+|||+++. .++|+.||.+|++
T Consensus 113 -----------~-----~~--~~~---~~~~~~--------------~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~ 157 (231)
T KOG4204|consen 113 -----------A-----FH--EEI---LKLLED--------------VEFDRAISFVNKLKTRFQGDDHVYKSFLEILRM 157 (231)
T ss_pred -----------c-----cc--chh---hhhccc--------------chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 00 000 000010 145678999999999999 7799999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000557 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1423)
Q Consensus 395 YsqeII~r~ELv~lV~~fLG~~PDLm~~Fk~FLg~~ 430 (1423)
|.++-.+..|+.+.|..+|++|+||+.+|..||..+
T Consensus 158 y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~ 193 (231)
T KOG4204|consen 158 YQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTD 193 (231)
T ss_pred HhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999754
No 6
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.81 E-value=2.4e-19 Score=216.80 Aligned_cols=211 Identities=24% Similarity=0.386 Sum_probs=143.7
Q ss_pred CCccchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCccCCC
Q 000557 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1423)
Q Consensus 157 ~~~vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hPDLL~eF~~FLP~~~~~~~~~~ 236 (1423)
-+++++.+|++||++||.+|.++|++|..||+||++|+.+-+++.+|+.+|+.||+|.|+||++|+.|||.+.....+.+
T Consensus 123 ~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S~~ 202 (1163)
T COG5602 123 YRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGSLP 202 (1163)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999987665221
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000557 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1423)
Q Consensus 237 ~~~~~~~n~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~d~s~~~P~~~~~~~~~~~~k~qr~~~~k~~~~r~~~~~ 316 (1423)
.+ .+ .+... ++|++..+.++- ....+.+...++....+|.+..
T Consensus 203 ~~--~~--s~l~v---tTP~gp~s~~pv---~ss~y~a~~n~~qrts~p~lps--------------------------- 245 (1163)
T COG5602 203 QP--NG--SRLHV---TTPQGPLSSPPV---QSSYYVAPCNHDQRTSHPTLPS--------------------------- 245 (1163)
T ss_pred CC--CC--Ceeee---cCCCCCCCCCCc---ccccccccccccccccCCCCcc---------------------------
Confidence 10 00 11111 111111100000 0000000000011111111000
Q ss_pred ccchhccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHHh
Q 000557 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1423)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~p~k~~~~~~~~~~g~~p~~~~~~~~~a~k~~~~~El~FFDKVKk~L~--~~~Y~eFLKcLnL 394 (1423)
+ .|+ +.-++..+++....+ ....++++++|..|||.++. ++.|.+||.+|.-
T Consensus 246 -----------~--~Q~-----------e~s~~~~~~sd~~~~--~~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~~Lrt 299 (1163)
T COG5602 246 -----------D--SQP-----------EPSAPSHMPSDARGK--HQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRT 299 (1163)
T ss_pred -----------c--cCC-----------CCCCcccCCcccccc--cceehhHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 0 000 000000000000001 11247899999999999999 9999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000557 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1423)
Q Consensus 395 YsqeII~r~ELv~lV~~fLG~~PDLm~~Fk~FLg~~ 430 (1423)
|..+.-+.+|++.+|+.+|..+|||+++|+.||...
T Consensus 300 yq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~ 335 (1163)
T COG5602 300 YQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDS 335 (1163)
T ss_pred HHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccc
Confidence 999999999999999999999999999999999753
No 7
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.28 E-value=3.4e-12 Score=108.40 Aligned_cols=47 Identities=40% Similarity=0.795 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCC
Q 000557 96 REKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLP 142 (1423)
Q Consensus 96 p~vY~~FLeIMkdfk~q~idt~gVi~rV~~LF~ghpdLI~GFN~FLP 142 (1423)
|++|++||+||++|+.++++..+|+++|+.||+||||||.+||.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 79999999999999999999999999999999999999999999998
No 8
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.22 E-value=1.4e-11 Score=104.65 Aligned_cols=47 Identities=53% Similarity=0.863 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCC
Q 000557 180 EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1423)
Q Consensus 180 p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hPDLL~eF~~FLP 226 (1423)
|++|++||+||++|+++.++..+|+++|+.||++||||+.+|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 79999999999999999999999999999999999999999999998
No 9
>PTZ00146 fibrillarin; Provisional
Probab=96.17 E-value=0.0075 Score=70.20 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=2.9
Q ss_pred ccccccc
Q 000557 486 SIQELDL 492 (1423)
Q Consensus 486 p~~elDl 492 (1423)
++..++|
T Consensus 266 ~~e~v~L 272 (293)
T PTZ00146 266 PKEQLTL 272 (293)
T ss_pred eEEEEec
Confidence 3344444
No 10
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=94.84 E-value=0.021 Score=68.22 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=7.4
Q ss_pred hHHHHHHHHHH
Q 000557 180 EHVYKSFLEIL 190 (1423)
Q Consensus 180 p~vYk~FLeIL 190 (1423)
|.+|.-||+-|
T Consensus 201 PQafdlFLKhl 211 (641)
T KOG3915|consen 201 PQAFDLFLKHL 211 (641)
T ss_pred HHHHHHHHHHH
Confidence 66777777653
No 11
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.50 E-value=0.039 Score=64.14 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=3.8
Q ss_pred CCccCCCCC
Q 000557 16 RPLTTAPPR 24 (1423)
Q Consensus 16 ~~~~~~~~~ 24 (1423)
||+--+||.
T Consensus 308 R~nE~~ppp 316 (465)
T KOG3973|consen 308 RTNEMVPPP 316 (465)
T ss_pred CcccCCCCC
Confidence 444444444
No 12
>PLN03138 Protein TOC75; Provisional
Probab=94.05 E-value=0.041 Score=71.27 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 000557 382 SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDL 412 (1423)
Q Consensus 382 ~~~Y~eFLKcLnLYsqeII~r~ELv~lV~~f 412 (1423)
+++.+||+..+ +.++.+++++|..-+..|
T Consensus 282 ~~v~~e~f~~~--~~~gklN~e~Lq~die~I 310 (796)
T PLN03138 282 KSVRREVLGML--RDQGKVSARLLQRIRDRV 310 (796)
T ss_pred hHHHHHHHhhh--ccCCcCCHHHHHHHHHHH
Confidence 67788888777 466678888877665543
No 13
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=93.58 E-value=0.062 Score=64.37 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=6.1
Q ss_pred hHHHHHHHHHH
Q 000557 382 SDDYQAFLKCL 392 (1423)
Q Consensus 382 ~~~Y~eFLKcL 392 (1423)
+++|+-|||.|
T Consensus 201 PQafdlFLKhl 211 (641)
T KOG3915|consen 201 PQAFDLFLKHL 211 (641)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 14
>PHA00370 III attachment protein
Probab=93.23 E-value=0.3 Score=55.13 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=7.0
Q ss_pred hhhhHHHHHHhhh
Q 000557 81 ALTYLKEVKDMFQ 93 (1423)
Q Consensus 81 Al~YL~~VK~~F~ 93 (1423)
+..--+++|+.+-
T Consensus 148 ~~kma~a~kdalt 160 (297)
T PHA00370 148 YPKMANANKDALT 160 (297)
T ss_pred cHHHhhhhhhhhc
Confidence 3344456676664
No 15
>COG4371 Predicted membrane protein [Function unknown]
Probab=93.23 E-value=0.35 Score=54.52 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=11.2
Q ss_pred hHHHHHHHHhccChhhh
Q 000557 118 GVIARVKDLFKGHNNLI 134 (1423)
Q Consensus 118 gVi~rV~~LF~ghpdLI 134 (1423)
.|++...-.+-.||+-.
T Consensus 181 ~vlQEA~LalLRHPEyW 197 (334)
T COG4371 181 RVLQEAALALLRHPEYW 197 (334)
T ss_pred HHHHHHHHHHHcCCcee
Confidence 46666666677787653
No 16
>PLN03138 Protein TOC75; Provisional
Probab=93.12 E-value=0.08 Score=68.72 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=6.6
Q ss_pred cHHHHHHHHHHhh
Q 000557 199 DINEVYSEVASLF 211 (1423)
Q Consensus 199 si~eV~~~Va~LF 211 (1423)
+..+|.+.+..|+
T Consensus 183 trsqLq~dv~~I~ 195 (796)
T PLN03138 183 TKAQLQKELETLA 195 (796)
T ss_pred CHHHHHHHHHHHH
Confidence 4445555555554
No 17
>PHA00370 III attachment protein
Probab=89.58 E-value=0.36 Score=54.53 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=7.6
Q ss_pred chHHHHHHHHHHHHHc
Q 000557 161 EFEEAITFVNKIKKRF 176 (1423)
Q Consensus 161 ef~~Ai~fvnKIK~RF 176 (1423)
+|...-..|+.||--|
T Consensus 257 e~~I~CdKId~~k~v~ 272 (297)
T PHA00370 257 EFIIGCDKINDFKGVF 272 (297)
T ss_pred hhhhcchhHHHHHHHH
Confidence 3344445555555444
No 18
>COG4371 Predicted membrane protein [Function unknown]
Probab=88.52 E-value=0.62 Score=52.67 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhccChh
Q 000557 200 INEVYSEVASLFEDHAD 216 (1423)
Q Consensus 200 i~eV~~~Va~LF~~hPD 216 (1423)
...|.++-+-.+--||+
T Consensus 179 r~~vlQEA~LalLRHPE 195 (334)
T COG4371 179 RARVLQEAALALLRHPE 195 (334)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 45666666655555654
No 19
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=86.09 E-value=1.3 Score=50.42 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=7.9
Q ss_pred hccccccccCCCcc
Q 000557 484 AKSIQELDLSNCQR 497 (1423)
Q Consensus 484 ~kp~~elDls~c~r 497 (1423)
.+|...+-|.-|++
T Consensus 288 lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 288 LKPKEQVTLEPFER 301 (317)
T ss_pred cCchheeccccccC
Confidence 35555566655554
No 20
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=85.00 E-value=0.28 Score=54.93 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=10.9
Q ss_pred CCCCCccccchhhhhHH
Q 000557 70 MGTSQKLTTSDALTYLK 86 (1423)
Q Consensus 70 ~~~~~~~~~~dAl~YL~ 86 (1423)
.-....|.++.-.-||+
T Consensus 24 eLask~l~iq~KrfYlD 40 (263)
T KOG3074|consen 24 ELASKRLQIQHKRFYLD 40 (263)
T ss_pred HHhhhhhhhhhheEEEE
Confidence 33456677777777775
No 21
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=81.02 E-value=16 Score=41.37 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=4.8
Q ss_pred hccChhhhh
Q 000557 127 FKGHNNLIF 135 (1423)
Q Consensus 127 F~ghpdLI~ 135 (1423)
|+.|-+|+-
T Consensus 137 LRHHSNLLA 145 (238)
T PF02084_consen 137 LRHHSNLLA 145 (238)
T ss_pred HHHHHHHHh
Confidence 445555554
No 22
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=73.32 E-value=4.4 Score=49.93 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhc
Q 000557 159 TVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE 212 (1423)
Q Consensus 159 ~vef~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~ 212 (1423)
+..++-...+.+.|+.|.+-. +-....+.++-.+|..|..
T Consensus 160 ~s~l~~~RTlr~al~Rria~~--------------~~~~~~~~~~~~~~~~~~~ 199 (421)
T PF04285_consen 160 PSNLDKKRTLREALKRRIALG--------------RPRRRELRELEEELEELEA 199 (421)
T ss_pred HHHHHHHHHhhHHHHHHHHhc--------------CCccccHHHHHHHHHHHhc
Confidence 345566666666676664321 1113345666666666654
No 23
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=72.81 E-value=8.8 Score=42.18 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000557 104 EVMKDF 109 (1423)
Q Consensus 104 eIMkdf 109 (1423)
+-|..|
T Consensus 129 e~myrY 134 (217)
T smart00157 129 ENMYRY 134 (217)
T ss_pred HHHHhC
Confidence 333333
No 24
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.49 E-value=9.4 Score=45.78 Aligned_cols=35 Identities=17% Similarity=0.358 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHH------HHHHhccCChhhHHHHHHHHhccC
Q 000557 95 QREKYDMFLEVM------KDFKAQRTDTAGVIARVKDLFKGH 130 (1423)
Q Consensus 95 ~p~vY~~FLeIM------kdfk~q~idt~gVi~rV~~LF~gh 130 (1423)
+|++--.|.++| -.|.... -+..||..++.+|-|-
T Consensus 336 dp~v~aal~d~~~np~n~~kyq~n~-kv~~~i~kl~~kf~g~ 376 (377)
T KOG1308|consen 336 DPEVQAALMDVSQNPANMMKYQNNP-KVMDVISKLSQKFPGM 376 (377)
T ss_pred ChHHHhhhhhcccChHHHHHhccCh-HHHHHHHHHHhhcCCC
Confidence 355555555553 3444433 2467899999999874
No 25
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=70.45 E-value=12 Score=35.56 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=14.9
Q ss_pred CCccccch---h-hhhHHHHHHhhhcChHHH
Q 000557 73 SQKLTTSD---A-LTYLKEVKDMFQDQREKY 99 (1423)
Q Consensus 73 ~~~~~~~d---A-l~YL~~VK~~F~d~p~vY 99 (1423)
.+++|.++ - -.|....+..+-.+-+-|
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~~~LD~~Ld~Y 67 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTKSKLDAELDSY 67 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555443 2 267777777665554444
No 26
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=69.35 E-value=3 Score=47.08 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 000557 184 KSFLEILNMY 193 (1423)
Q Consensus 184 k~FLeIL~~y 193 (1423)
-.|+++|+.|
T Consensus 71 aef~d~l~~f 80 (263)
T KOG3074|consen 71 AEFRDILNDF 80 (263)
T ss_pred HHHHHHHHHH
Confidence 3455566554
No 27
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=67.30 E-value=18 Score=34.89 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhc--cChhHHHHHhhhCCCCCCC
Q 000557 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE--DHADLLEEFTRFLPDTSAT 231 (1423)
Q Consensus 163 ~~Ai~fvnKIK~RF~~~p~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~--~hPDLL~eF~~FLP~~~~~ 231 (1423)
+.|..|..||..-+.++|..=....++|++|..+ +.++.+...+..++. .|--|+++-..|+|.....
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~-k~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAAD-KNVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 5699999999999999999989999999999664 456777777777774 4778999999999987553
No 28
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=66.80 E-value=12 Score=43.30 Aligned_cols=29 Identities=7% Similarity=0.310 Sum_probs=23.0
Q ss_pred hhHHHHHHhhhcChHHHHHHHHHHHHHHh
Q 000557 83 TYLKEVKDMFQDQREKYDMFLEVMKDFKA 111 (1423)
Q Consensus 83 ~YL~~VK~~F~d~p~vY~~FLeIMkdfk~ 111 (1423)
..+++++.+|+=+...-+.|+..|.+|-.
T Consensus 83 e~i~~i~~~~GFDKp~~eR~~~Ml~~y~r 111 (364)
T COG4174 83 ELIAEIEKQYGFDKPPLERYFLMLWDYAR 111 (364)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 46789999999544456789999999974
No 29
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=66.78 E-value=8.2 Score=48.42 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q 000557 403 NDLQNLVTDLL 413 (1423)
Q Consensus 403 ~ELv~lV~~fL 413 (1423)
+||-.||..||
T Consensus 371 ee~~~lv~tli 381 (727)
T PF05642_consen 371 EELKSLVNTLI 381 (727)
T ss_pred HHHHHHHHHHH
Confidence 34555555555
No 30
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=66.75 E-value=6 Score=48.93 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHhhhc
Q 000557 382 SDDYQAFLKCLHIYSN 397 (1423)
Q Consensus 382 ~~~Y~eFLKcLnLYsq 397 (1423)
+-.=..|.++|.-|.+
T Consensus 302 eGda~rF~~i~~~Y~k 317 (419)
T PRK10930 302 QGEVARFAKLLPEYKA 317 (419)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 4445577777777764
No 31
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=66.55 E-value=6.1 Score=44.77 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.2
Q ss_pred cchhhhhHHHHHHhhhc
Q 000557 78 TSDALTYLKEVKDMFQD 94 (1423)
Q Consensus 78 ~~dAl~YL~~VK~~F~d 94 (1423)
--|+...|..|..+++.
T Consensus 70 ~peea~r~~~~Qaqygs 86 (277)
T PF05387_consen 70 SPEEAGRAQRVQAQYGS 86 (277)
T ss_pred ChhHhhhhccchhhhcc
Confidence 47888999999999884
No 32
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=65.75 E-value=18 Score=34.88 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=56.7
Q ss_pred chhhhhHHHHHHhhhcChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhcc--ChhhhhhhhccCCccccc
Q 000557 79 SDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKG--HNNLIFGFNTFLPKGYEI 147 (1423)
Q Consensus 79 ~dAl~YL~~VK~~F~d~p~vY~~FLeIMkdfk~q~idt~gVi~rV~~LF~g--hpdLI~GFN~FLP~gy~I 147 (1423)
+-|..|..+|..-+.++|.+=+...++++.|-+.+ +++.++..+.-++.. |-.||...-.|+|.-++.
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k-~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAADK-NVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 45889999999999999999999999999998754 677777777777765 567899999999986654
No 33
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=63.96 E-value=11 Score=47.45 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=3.8
Q ss_pred HHHHhhc
Q 000557 374 DKVKEKL 380 (1423)
Q Consensus 374 DKVKk~L 380 (1423)
.++|+.|
T Consensus 363 ~~lk~fl 369 (727)
T PF05642_consen 363 EKLKKFL 369 (727)
T ss_pred HHHHHHH
Confidence 4556555
No 34
>PTZ00110 helicase; Provisional
Probab=63.66 E-value=16 Score=46.64 Aligned_cols=8 Identities=0% Similarity=0.123 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000557 751 DQLNKAMK 758 (1423)
Q Consensus 751 ~~~~ki~~ 758 (1423)
+++++|+.
T Consensus 414 ~eR~~il~ 421 (545)
T PTZ00110 414 EERTWVLN 421 (545)
T ss_pred HHHHHHHH
Confidence 33433333
No 35
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=61.88 E-value=10 Score=37.73 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCCCCCCCCCccccchhhhhHHHHHHhhh
Q 000557 65 GMTAGMGTSQKLTTSDALTYLKEVKDMFQ 93 (1423)
Q Consensus 65 g~ggg~~~~~~~~~~dAl~YL~~VK~~F~ 93 (1423)
+.++.......+......+|-+.|+..++
T Consensus 52 ~~s~~~~s~~~i~t~s~~dfW~~L~~~l~ 80 (98)
T PF07655_consen 52 GGSGSSSSGTSITTESKSDFWEDLQKTLQ 80 (98)
T ss_pred CccccccCceEEEEEECCchHHHHHHHHH
Confidence 33345556788899999999888877654
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.18 E-value=15 Score=47.29 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=5.3
Q ss_pred hHHHHHHhhc
Q 000557 371 IFCDKVKEKL 380 (1423)
Q Consensus 371 ~FFDKVKk~L 380 (1423)
+|.-+|++++
T Consensus 556 ~~~~~~~~~~ 565 (572)
T PRK04537 556 SLLGRIGRRL 565 (572)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 37
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=59.59 E-value=16 Score=40.30 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=12.8
Q ss_pred cChhHHHHHhhhCCCCCC
Q 000557 213 DHADLLEEFTRFLPDTSA 230 (1423)
Q Consensus 213 ~hPDLL~eF~~FLP~~~~ 230 (1423)
-.||-|.-...|||....
T Consensus 127 i~p~KllPl~RFLP~p~~ 144 (215)
T KOG3262|consen 127 IDPDKLLPLDRFLPQPVG 144 (215)
T ss_pred ecccccCcHhhcCCCCCC
Confidence 356777777889998743
No 38
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.68 E-value=19 Score=42.48 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=6.4
Q ss_pred HHHHHHHhhccCh
Q 000557 203 VYSEVASLFEDHA 215 (1423)
Q Consensus 203 V~~~Va~LF~~hP 215 (1423)
+|..+...|+-.|
T Consensus 180 lyR~~l~~L~l~~ 192 (362)
T KOG3875|consen 180 LYRLLLKMLKLSP 192 (362)
T ss_pred HHHHHHHHhCCCc
Confidence 4555555554443
No 39
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=55.82 E-value=21 Score=42.20 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.5
Q ss_pred cHHHHHHHHHHhhccChhH
Q 000557 199 DINEVYSEVASLFEDHADL 217 (1423)
Q Consensus 199 si~eV~~~Va~LF~~hPDL 217 (1423)
-+..|.+++.-.|--|||.
T Consensus 138 Gl~~~L~E~~l~LLR~~~~ 156 (289)
T PF07466_consen 138 GLARVLQETTLALLRHPEY 156 (289)
T ss_pred HHHHHHHHHHHHHHhCcCc
Confidence 3456666666666666654
No 40
>PRK05325 hypothetical protein; Provisional
Probab=53.41 E-value=13 Score=45.83 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=11.9
Q ss_pred cchHHHHHHHHHHHHHcC
Q 000557 160 VEFEEAITFVNKIKKRFH 177 (1423)
Q Consensus 160 vef~~Ai~fvnKIK~RF~ 177 (1423)
...+--..+.+.+|.|.+
T Consensus 145 ~~l~~~RT~r~al~Rria 162 (401)
T PRK05325 145 SNLDKKRTLREALKRRIA 162 (401)
T ss_pred ccchHHHHHHHHHHHHhh
Confidence 345556667777777765
No 41
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=50.84 E-value=24 Score=45.74 Aligned_cols=8 Identities=25% Similarity=0.114 Sum_probs=3.3
Q ss_pred Chhhhhhh
Q 000557 130 HNNLIFGF 137 (1423)
Q Consensus 130 hpdLI~GF 137 (1423)
||-|..-|
T Consensus 197 ~p~~~~~~ 204 (828)
T PF04094_consen 197 SPFLFVFF 204 (828)
T ss_pred CchHhhhc
Confidence 44444433
No 42
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=48.57 E-value=17 Score=43.01 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCC
Q 000557 166 ITFVNKIKKRFHND 179 (1423)
Q Consensus 166 i~fvnKIK~RF~~~ 179 (1423)
+.|++.++.+|...
T Consensus 152 ~~f~~~L~~~~ga~ 165 (292)
T PF04228_consen 152 LSFFDELQQRFGAS 165 (292)
T ss_pred hHHHHHHHHHhCCc
Confidence 35888888888654
No 43
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=47.13 E-value=62 Score=38.96 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=59.2
Q ss_pred CChhhHHHHHHHHhccChh---hhhhhhccCCccccccCCCCC------CCCCCccchHHHHHHHH-HHHHHcCCChHHH
Q 000557 114 TDTAGVIARVKDLFKGHNN---LIFGFNTFLPKGYEITLDEDE------APPKKTVEFEEAITFVN-KIKKRFHNDEHVY 183 (1423)
Q Consensus 114 idt~gVi~rV~~LF~ghpd---LI~GFN~FLP~gy~I~~~~de------~pp~~~vef~~Ai~fvn-KIK~RF~~~p~vY 183 (1423)
+|..++-.+|++|+..|=. .+.-|..+=|..-.|.+=.++ .-+.+......-..+++ +|+.++..+|..|
T Consensus 117 ~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~e~L~~~l~~~I~~~~~~N~~~~ 196 (335)
T PF11867_consen 117 PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKAELLEKLLRDEIKVRMKENPVRY 196 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 5677788888888876621 222232221111111110000 01122222233334444 7899999999999
Q ss_pred HHHH----HHHHHHhhccCcHHHHHHHHHHhhc
Q 000557 184 KSFL----EILNMYRKEHKDINEVYSEVASLFE 212 (1423)
Q Consensus 184 k~FL----eIL~~y~~~~~si~eV~~~Va~LF~ 212 (1423)
++|- ++|..|+++.++..++++++..|-+
T Consensus 197 ~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~ 229 (335)
T PF11867_consen 197 KKFSERLEEIIEKYNNRSISSEEVIEELIKLAK 229 (335)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 9888 4788899999999999999887643
No 44
>PRK05325 hypothetical protein; Provisional
Probab=46.36 E-value=20 Score=44.24 Aligned_cols=10 Identities=10% Similarity=0.354 Sum_probs=4.7
Q ss_pred HHHHHHHhhh
Q 000557 387 AFLKCLHIYS 396 (1423)
Q Consensus 387 eFLKcLnLYs 396 (1423)
+.|..+|+|.
T Consensus 338 ~llp~~~~f~ 347 (401)
T PRK05325 338 ELLPVCNYFA 347 (401)
T ss_pred HHHHHhhheE
Confidence 3444555543
No 45
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=45.96 E-value=81 Score=37.00 Aligned_cols=27 Identities=19% Similarity=0.120 Sum_probs=16.8
Q ss_pred hhhHHHHHHhhhc--ChHHHHHHHHHHHH
Q 000557 82 LTYLKEVKDMFQD--QREKYDMFLEVMKD 108 (1423)
Q Consensus 82 l~YL~~VK~~F~d--~p~vY~~FLeIMkd 108 (1423)
..-+..|=+.++. +-+..-.||--|-.
T Consensus 63 ~eQvacvCe~L~q~Gd~erL~rFlwsLp~ 91 (304)
T KOG0775|consen 63 EEQVACVCESLQQGGDIERLGRFLWSLPV 91 (304)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHcCch
Confidence 3345556666664 67777888766553
No 46
>PTZ00110 helicase; Provisional
Probab=41.80 E-value=42 Score=42.99 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 000557 730 NIHEDLYKL 738 (1423)
Q Consensus 730 ~I~~D~~~L 738 (1423)
.+..++.++
T Consensus 487 ~~~~~l~~~ 495 (545)
T PTZ00110 487 RLARDLVKV 495 (545)
T ss_pred HHHHHHHHH
Confidence 333333333
No 47
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=41.73 E-value=64 Score=30.58 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=39.1
Q ss_pred hHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 000557 371 IFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGK 415 (1423)
Q Consensus 371 ~FFDKVKk~L~~~~Y~eFLKcLnLYsqeII~r~ELv~lV~~fLG~ 415 (1423)
..|..+++.|.++..+.-.+..+-|-+..|+|+||+..+..+.|+
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 367888898986777777788888899999999999999999995
No 48
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=40.43 E-value=27 Score=42.53 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000557 387 AFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1423)
Q Consensus 387 eFLKcLnLYsqeII~r~ELv~lV~~fLG~~PDLm~~Fk~FL 427 (1423)
+.|.++|+|.=.-|... ..+..||..|+.-|
T Consensus 317 ~llp~~~~f~Y~Ei~~~----------~~~~~l~~~y~~~i 347 (371)
T TIGR02877 317 KLLEVCNLFGYGEIMPY----------GYSNTLKNKFKNEI 347 (371)
T ss_pred HHHHhhheEEEEEecCC----------CCcchHHHHHHhhh
Confidence 46777777755444320 23456777776534
No 49
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=39.61 E-value=31 Score=44.78 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.4
Q ss_pred Cccccc
Q 000557 142 PKGYEI 147 (1423)
Q Consensus 142 P~gy~I 147 (1423)
||+..+
T Consensus 165 Ppkwtf 170 (828)
T PF04094_consen 165 PPKWTF 170 (828)
T ss_pred CCCCcc
Confidence 344443
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=38.79 E-value=25 Score=42.37 Aligned_cols=15 Identities=27% Similarity=0.529 Sum_probs=5.8
Q ss_pred hhhhhhhccCCcccc
Q 000557 132 NLIFGFNTFLPKGYE 146 (1423)
Q Consensus 132 dLI~GFN~FLP~gy~ 146 (1423)
||+.+...|=|-.|-
T Consensus 47 dl~eal~~fG~i~yv 61 (494)
T KOG1456|consen 47 DLVEALSNFGPIAYV 61 (494)
T ss_pred HHHHHHhcCCceEEE
Confidence 333333334333333
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=38.41 E-value=28 Score=42.06 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHhccChHHHHHHhhhhc
Q 000557 400 IKRNDLQNLVTDLLGKYMDLMDEFNHFFE 428 (1423)
Q Consensus 400 I~r~ELv~lV~~fLG~~PDLm~~Fk~FLg 428 (1423)
+++++-|.-+.+|| -||=--.||+|-+
T Consensus 359 ~SkQ~~v~~~~pfl--LpDgSpSfKdys~ 385 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFL--LPDGSPSFKDYSG 385 (494)
T ss_pred eccccccccCCcee--cCCCCcchhhccc
Confidence 34444444444444 1222234555554
No 52
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=38.26 E-value=25 Score=42.07 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=4.6
Q ss_pred CCcccCCc
Q 000557 11 GSQFKRPL 18 (1423)
Q Consensus 11 ~~q~~~~~ 18 (1423)
|-.+|...
T Consensus 41 G~KLKK~~ 48 (437)
T KOG4462|consen 41 GKKLKKAT 48 (437)
T ss_pred cceeccee
Confidence 55666554
No 53
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=38.16 E-value=34 Score=38.84 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHHHHc
Q 000557 161 EFEEAITFVNKIKKRF 176 (1423)
Q Consensus 161 ef~~Ai~fvnKIK~RF 176 (1423)
+|..=.+||+.-++.|
T Consensus 115 EF~~Lw~~i~~Wr~vF 130 (221)
T KOG0037|consen 115 EFKALWKYINQWRNVF 130 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444556666665555
No 54
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=36.36 E-value=32 Score=45.23 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-hhhhhcccCcccc
Q 000557 640 KQKQEEWTKCRSDFNKVWAEIYAK-NHYKSLDHRSFYF 676 (1423)
Q Consensus 640 KqK~eEWr~aq~e~nKvWrev~~K-ny~KSLDHq~~~F 676 (1423)
.+|.|+-+.-|+.-|.-=.++.-| -.+..||-||+-+
T Consensus 903 ~~tqe~pt~Qqrs~~~seNQqflKev~~qvL~GqgVGw 940 (1588)
T KOG3570|consen 903 TVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGW 940 (1588)
T ss_pred cccCCCCCccccccccchhhHHHHHHHHHHhcccccce
Confidence 345556555555433222222222 2345688888764
No 55
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=35.85 E-value=47 Score=34.15 Aligned_cols=65 Identities=20% Similarity=0.418 Sum_probs=47.3
Q ss_pred hhhhhhhhHHHHHHhhcC---hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHh--ccChHHHHHHhhhhc
Q 000557 364 SIYNQGFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1423)
Q Consensus 364 ~~~~~El~FFDKVKk~L~---~~~Y~eFLKcLnLYsqeII~r~ELv~lV~~fL--G~~PDLm~~Fk~FLg 428 (1423)
....+-+..|+++.+.+. .+-|-.|-.+|..|...+..+=++-.-+..++ |-+++||.+|+.++.
T Consensus 41 eevee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~~eti~Al~~Qgl~~~lM~ef~~~i~ 110 (113)
T PF08963_consen 41 EEVEEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDVHETIEALLRQGLFQPLMTEFKKIIK 110 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCHHHHHHHHHHccCcHHHHHHHHHHHh
Confidence 344566789999999988 66678999999999987777766666677777 679999999999874
No 56
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=33.40 E-value=66 Score=38.18 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=4.9
Q ss_pred CCCcccCC
Q 000557 10 GGSQFKRP 17 (1423)
Q Consensus 10 ~~~q~~~~ 17 (1423)
+|+-|+.|
T Consensus 9 GG~SFssp 16 (289)
T PF07466_consen 9 GGGSFSSP 16 (289)
T ss_pred CCCCCCCC
Confidence 46666655
No 57
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=2.6e+02 Score=33.59 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000557 102 FLEVMKDF 109 (1423)
Q Consensus 102 FLeIMkdf 109 (1423)
+|.|-..|
T Consensus 150 vi~Vae~F 157 (362)
T KOG3875|consen 150 VISVAENF 157 (362)
T ss_pred HHHHHHHH
Confidence 33333444
No 58
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=33.06 E-value=44 Score=39.05 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=8.5
Q ss_pred cChhhhhhhhccCCc
Q 000557 129 GHNNLIFGFNTFLPK 143 (1423)
Q Consensus 129 ghpdLI~GFN~FLP~ 143 (1423)
|.-+-+..|---||+
T Consensus 77 Gd~erL~rFlwsLp~ 91 (304)
T KOG0775|consen 77 GDIERLGRFLWSLPV 91 (304)
T ss_pred cCHHHHHHHHHcCch
Confidence 344445556666776
No 59
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=29.73 E-value=62 Score=40.54 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=76.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccccccchhH------HHHHHHHhhCCCh--------HHHHHH
Q 000557 558 DDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSAL------NLRCIERLYGDHG--------LDVMDI 623 (1423)
Q Consensus 558 DERfElD~~IE~~~~ti~~Le~l~~~i~~~~~e~~~~~~l~~~l~~i------~~R~I~rIYGd~g--------~evi~~ 623 (1423)
|+..|+|.+|.+...|-+.|..+-+.|..+-++..+ ++...+- |.-..++++|+.. .|+|++
T Consensus 523 d~~ield~~~~sl~nar~i~n~~~k~~p~lip~~p~----ddd~~~a~~~a~ey~pt~rk~~gn~~kkik~~itae~i~~ 598 (758)
T COG5324 523 DDIIELDPLIGSLENARRIVNYFKKNIPELIPNDPS----DDDYAAALNYAVEYVPTYRKTFGNDSKKIKNKITAEGITG 598 (758)
T ss_pred cceeecccccchhhhHHHHHHHHHhhCccccCCCCC----chHHHHHHhhhhhcCchhhhhhCCchHHhhhheehhhccc
Confidence 677899999999988888887777777665554332 2222222 3334567777432 244444
Q ss_pred HH---hCcCcchhHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHH-------------hhhhhcccCccccccccccccc
Q 000557 624 LR---KNPAIALPVMLTRLKQKQEEWT--KCRSDFNKVWAEIYAK-------------NHYKSLDHRSFYFKQQDSKNLS 685 (1423)
Q Consensus 624 l~---knP~~alPVVL~RLKqK~eEWr--~aq~e~nKvWrev~~K-------------ny~KSLDHq~~~FKq~DkK~ls 685 (1423)
.. +....-.-|+|. ||.-|-. ..-.+.|+.|.+...+ |-.|+-..|...-|..||-+++
T Consensus 599 ~~~c~~~~~~~f~~ll~---~k~~~~sl~~vlt~a~~~wq~~~~ryt~q~s~~~~~i~~sq~~~n~q~~~~k~t~km~fr 675 (758)
T COG5324 599 SSTCFKKAPRYFGVLLD---RKTVESSLVQVLTIANLQWQEAFSRYTLQDSFHITMIHESQKPVNSQHMHDKNTTKMGFR 675 (758)
T ss_pred hHHHHHHhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccccccccccccccee
Confidence 33 333333456665 4544443 4446889999988766 3456666677777777776666
Q ss_pred hhHHH
Q 000557 686 TKSLV 690 (1423)
Q Consensus 686 ~K~Lv 690 (1423)
-.+|+
T Consensus 676 i~~l~ 680 (758)
T COG5324 676 ITHLV 680 (758)
T ss_pred EEEEe
Confidence 55554
No 60
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=28.16 E-value=62 Score=39.61 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHHHHc
Q 000557 161 EFEEAITFVNKIKKRF 176 (1423)
Q Consensus 161 ef~~Ai~fvnKIK~RF 176 (1423)
..+--..+.+.+|.|.
T Consensus 158 ~l~~~RT~r~al~Rri 173 (371)
T TIGR02877 158 NLDKKRTVIEALKRNQ 173 (371)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3444455556665554
No 61
>KOG3590 consensus Protein kinase A anchoring protein [Signal transduction mechanisms]
Probab=27.40 E-value=1.1e+02 Score=37.58 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=9.0
Q ss_pred HhhhcChHHHHHHHHHH
Q 000557 90 DMFQDQREKYDMFLEVM 106 (1423)
Q Consensus 90 ~~F~d~p~vY~~FLeIM 106 (1423)
++.-++|-+..=|++-|
T Consensus 116 ~~il~D~~~LSYFiQYL 132 (602)
T KOG3590|consen 116 EQVLHDTIVLSYFIQYL 132 (602)
T ss_pred HHHhccchHHHHHHHHH
Confidence 34445666655555443
No 62
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=27.30 E-value=63 Score=28.58 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 000557 1228 LDKLLYRLCKQLQTVAADEMDNKLIQLYE 1256 (1423)
Q Consensus 1228 iDKLI~~lvKQlq~ivsDe~~~~ll~L~~ 1256 (1423)
||.|+++| |++||++.|..+++=++|..
T Consensus 2 leell~sL-k~iqh~L~D~qSQ~Dv~lll 29 (49)
T PF09060_consen 2 LEELLSSL-KHIQHCLNDSQSQQDVELLL 29 (49)
T ss_dssp HHHHHHHH-HHHHCCH-SHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhhccHhhHHhHHHHH
Confidence 56777764 99999999977777555443
No 63
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=25.73 E-value=4.2e+02 Score=34.45 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=12.4
Q ss_pred cccCeeeecccCCCCcccc
Q 000557 524 VLNDHWVSVTSGSEDYSFK 542 (1423)
Q Consensus 524 VLND~WVS~t~~SED~~F~ 542 (1423)
-|||.+-|.-|-|--..|+
T Consensus 623 rlndsysclgwfspgqvfv 641 (1218)
T KOG3543|consen 623 RLNDSYSCLGWFSPGQVFV 641 (1218)
T ss_pred hcCCcchhccccCCCceee
Confidence 4677777777766655554
No 64
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=1.1e+02 Score=38.71 Aligned_cols=7 Identities=57% Similarity=1.213 Sum_probs=4.3
Q ss_pred CccccCC
Q 000557 500 PSYRLLP 506 (1423)
Q Consensus 500 pSYR~LP 506 (1423)
||=+++|
T Consensus 324 ~s~kliP 330 (508)
T KOG3091|consen 324 PSNKLIP 330 (508)
T ss_pred Ccccccc
Confidence 6656665
No 65
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=24.88 E-value=2.1e+02 Score=27.84 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=48.1
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--hHHHHHHhhhhcc
Q 000557 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKY--MDLMDEFNHFFER 429 (1423)
Q Consensus 370 l~FFDKVKk~L~~~~Y~eFLKcLnLYsqeII~r~ELv~lV~~fLG~~--PDLm~~Fk~FLg~ 429 (1423)
-.|.++|...|...--+.|..+|+.|.++- +..+||.-+..+|... -.|+.+...+|..
T Consensus 6 r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~-~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~ 66 (78)
T cd07347 6 REFSQQVDHLLTDAEREQVTRALERYHQER-NVDDLVRDLYLVLDTPAKLPLLQFLRQVIPP 66 (78)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCcHhHHHHHHHHHHHcCH
Confidence 358999999999333678999999999999 9999999999999642 2677777777754
No 66
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=24.80 E-value=1.5e+02 Score=30.45 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=43.2
Q ss_pred hhhhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCh
Q 000557 368 QGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYM 417 (1423)
Q Consensus 368 ~El~FFDKVKk~L~~~~Y~eFLKcLnLYsqeII~r~ELv~lV~~fLG~~P 417 (1423)
--...|.-.|+.+..+.=++|+.+|..|.++.|+...++.+...++.+++
T Consensus 54 vl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ry~ 103 (117)
T PF08349_consen 54 VLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARRYP 103 (117)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHCC
Confidence 33456777888888666789999999999999999999999999998886
No 67
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.13 E-value=1.1e+02 Score=39.01 Aligned_cols=9 Identities=22% Similarity=0.600 Sum_probs=4.6
Q ss_pred HHHHHHhhh
Q 000557 85 LKEVKDMFQ 93 (1423)
Q Consensus 85 L~~VK~~F~ 93 (1423)
+..+|..|+
T Consensus 660 ~~~~r~af~ 668 (731)
T KOG0339|consen 660 ITAMRTAFQ 668 (731)
T ss_pred HHHHHHHHH
Confidence 445555553
No 68
>PF14181 YqfQ: YqfQ-like protein
Probab=23.75 E-value=72 Score=34.89 Aligned_cols=8 Identities=25% Similarity=0.301 Sum_probs=3.8
Q ss_pred hhhHHHHH
Q 000557 82 LTYLKEVK 89 (1423)
Q Consensus 82 l~YL~~VK 89 (1423)
..+|..|-
T Consensus 55 ~~mL~N~Q 62 (161)
T PF14181_consen 55 SGMLNNVQ 62 (161)
T ss_pred HHHHHHHH
Confidence 35555443
No 69
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=23.67 E-value=81 Score=35.99 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=11.1
Q ss_pred ChHHHHHHHHHHHHHHhccCChhhHHH
Q 000557 95 QREKYDMFLEVMKDFKAQRTDTAGVIA 121 (1423)
Q Consensus 95 ~p~vY~~FLeIMkdfk~q~idt~gVi~ 121 (1423)
.|.++.-|-.+=++ .+++|...++..
T Consensus 56 ~~~~~~~f~~vD~d-~sg~i~~~eLq~ 81 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD-RSGRILAKELQQ 81 (221)
T ss_pred cHHHHHHHHhhCcc-ccccccHHHHHH
Confidence 45555544433222 134555544443
No 70
>PLN02705 beta-amylase
Probab=22.63 E-value=67 Score=41.42 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 000557 1188 DLYARFMTALYN 1199 (1423)
Q Consensus 1188 ~~Y~~fL~~l~~ 1199 (1423)
+=|..+.+|+.+
T Consensus 557 DGY~pIa~mfar 568 (681)
T PLN02705 557 DGYSPVFETLKK 568 (681)
T ss_pred ccHHHHHHHHHH
Confidence 335555555544
No 71
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=22.35 E-value=1.6e+02 Score=33.75 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 000557 100 DMFLEVMKD 108 (1423)
Q Consensus 100 ~~FLeIMkd 108 (1423)
.+|...|++
T Consensus 59 ~~lr~~~~~ 67 (233)
T PF11705_consen 59 RELRERMRD 67 (233)
T ss_pred HHHHHHHHh
Confidence 334444433
No 72
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=20.69 E-value=1.8e+02 Score=26.85 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=46.6
Q ss_pred HHHHHHhhcC---hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000557 372 FCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1423)
Q Consensus 372 FFDKVKk~L~---~~~Y~eFLKcLnLYsqeII~r~ELv~lV~~fLG~~PDLm~~Fk~FL 427 (1423)
|.+++...++ -..|..|.+-|.-|+.-+.+|..|+..+..+-..|.+|-.=.+.+|
T Consensus 2 yW~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 2 YWERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566666666 6789999999999999999999999999998888888877666654
No 73
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.45 E-value=1.3e+02 Score=37.98 Aligned_cols=7 Identities=0% Similarity=-0.016 Sum_probs=3.3
Q ss_pred hHHHHHH
Q 000557 382 SDDYQAF 388 (1423)
Q Consensus 382 ~~~Y~eF 388 (1423)
+..|+++
T Consensus 265 p~~~~~~ 271 (508)
T KOG3091|consen 265 PQSLNDQ 271 (508)
T ss_pred chhHHHH
Confidence 4444444
Done!