Query 000558
Match_columns 1423
No_of_seqs 355 out of 653
Neff 5.3
Searched_HMMs 46136
Date Mon Apr 1 19:14:08 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5602 SIN3 Histone deacetyla 100.0 1E-155 3E-160 1377.1 51.9 941 70-1421 120-1136(1163)
2 smart00761 HDAC_interact Histo 100.0 2.5E-43 5.3E-48 338.7 7.1 100 498-597 1-101 (102)
3 PF08295 Sin3_corepress: Sin3 100.0 2.3E-41 4.9E-46 327.4 7.9 100 498-597 1-100 (101)
4 KOG4204 Histone deacetylase co 100.0 2.1E-38 4.6E-43 348.6 18.0 160 73-232 14-197 (231)
5 KOG4204 Histone deacetylase co 99.8 2.4E-20 5.3E-25 206.2 17.1 178 157-434 14-193 (231)
6 COG5602 SIN3 Histone deacetyla 99.8 2.8E-20 6.1E-25 224.7 18.1 211 157-434 123-335 (1163)
7 PF02671 PAH: Paired amphipath 99.3 2.4E-12 5.2E-17 109.3 5.0 47 96-142 1-47 (47)
8 PF02671 PAH: Paired amphipath 99.2 1.2E-11 2.5E-16 105.2 5.9 47 180-226 1-47 (47)
9 PTZ00146 fibrillarin; Provisio 95.8 0.014 3E-07 68.0 6.2 6 491-496 267-272 (293)
10 KOG3973 Uncharacterized conser 95.0 0.034 7.5E-07 64.5 5.6 11 16-26 308-318 (465)
11 PLN03138 Protein TOC75; Provis 94.1 0.039 8.4E-07 71.5 4.0 29 386-416 282-310 (796)
12 KOG3915 Transcription regulato 93.8 0.048 1E-06 65.2 3.5 10 386-395 201-210 (641)
13 PLN03138 Protein TOC75; Provis 93.2 0.076 1.6E-06 68.9 4.2 13 199-211 183-195 (796)
14 COG4371 Predicted membrane pro 93.1 0.34 7.4E-06 54.6 8.5 17 118-134 181-197 (334)
15 KOG3915 Transcription regulato 92.4 0.12 2.5E-06 62.2 4.0 12 179-190 200-211 (641)
16 PHA00370 III attachment protei 90.9 0.81 1.8E-05 51.8 8.2 13 81-93 148-160 (297)
17 PHA00370 III attachment protei 87.5 0.69 1.5E-05 52.4 4.6 16 161-176 257-272 (297)
18 COG4371 Predicted membrane pro 86.7 0.72 1.6E-05 52.1 4.2 17 200-216 179-195 (334)
19 KOG1596 Fibrillarin and relate 84.6 1.6 3.5E-05 49.7 5.7 14 488-501 288-301 (317)
20 KOG3074 Transcriptional regula 82.8 0.37 8.1E-06 53.9 -0.1 15 72-86 26-40 (263)
21 PF04285 DUF444: Protein of un 80.2 2.8 6.1E-05 51.6 6.0 39 160-212 161-199 (421)
22 KOG1308 Hsp70-interacting prot 79.6 4.7 0.0001 48.2 7.2 35 95-130 336-376 (377)
23 cd07354 HN_L-delphilin-R1_like 74.5 11 0.00024 36.3 6.8 68 163-231 3-72 (80)
24 PF02084 Bindin: Bindin; Inte 72.6 47 0.001 37.8 12.1 16 178-193 148-163 (238)
25 cd07354 HN_L-delphilin-R1_like 71.9 12 0.00026 36.1 6.4 68 79-147 3-72 (80)
26 PF13865 FoP_duplication: C-te 71.7 9.2 0.0002 36.3 5.7 25 73-97 37-65 (74)
27 KOG3074 Transcriptional regula 70.4 2.7 6E-05 47.3 2.2 10 184-193 71-80 (263)
28 PTZ00110 helicase; Provisional 67.0 12 0.00026 47.8 7.2 10 755-764 414-423 (545)
29 PRK10930 FtsH protease regulat 65.6 6.3 0.00014 48.7 4.2 16 386-401 302-317 (419)
30 KOG3262 H/ACA small nucleolar 65.2 9.7 0.00021 41.8 4.9 17 214-230 128-144 (215)
31 COG4174 ABC-type uncharacteriz 65.0 15 0.00032 42.7 6.5 29 83-111 83-111 (364)
32 PF07466 DUF1517: Protein of u 63.3 12 0.00026 44.2 5.8 19 199-217 138-156 (289)
33 PF02084 Bindin: Bindin; Inte 62.3 44 0.00096 38.0 9.4 9 127-135 137-145 (238)
34 PF05387 Chorion_3: Chorion fa 62.2 8.3 0.00018 43.8 3.9 17 78-94 70-86 (277)
35 KOG0105 Alternative splicing f 59.5 7.9 0.00017 42.6 3.1 9 99-107 129-137 (241)
36 PF05642 Sporozoite_P67: Sporo 57.1 16 0.00034 46.1 5.3 10 408-417 372-381 (727)
37 PF07655 Secretin_N_2: Secreti 56.2 13 0.00027 37.1 3.7 30 64-93 51-80 (98)
38 PRK04537 ATP-dependent RNA hel 55.7 19 0.00042 46.3 6.2 10 375-384 556-565 (572)
39 PF05642 Sporozoite_P67: Sporo 54.8 19 0.00042 45.4 5.6 7 378-384 363-369 (727)
40 PRK05325 hypothetical protein; 53.4 13 0.00028 45.7 3.9 17 161-177 146-162 (401)
41 KOG3875 Peroxisomal biogenesis 49.9 27 0.00057 41.4 5.4 13 203-215 180-192 (362)
42 KOG1924 RhoA GTPase effector D 49.6 35 0.00077 44.6 6.8 39 650-701 948-986 (1102)
43 KOG4462 WASP-interacting prote 46.3 24 0.00052 42.3 4.4 9 10-18 40-48 (437)
44 PF04094 DUF390: Protein of un 45.4 33 0.00071 44.6 5.7 6 560-565 483-488 (828)
45 TIGR02877 spore_yhbH sporulati 44.3 23 0.00049 43.2 3.9 31 391-431 317-347 (371)
46 PF04228 Zn_peptidase: Putativ 44.2 23 0.00049 42.0 3.9 14 166-179 152-165 (292)
47 PRK05325 hypothetical protein; 43.9 22 0.00049 43.7 3.9 10 391-400 338-347 (401)
48 KOG1456 Heterogeneous nuclear 43.5 21 0.00045 43.1 3.4 19 132-150 47-65 (494)
49 PF11867 DUF3387: Domain of un 42.2 85 0.0019 37.8 8.4 47 166-212 178-229 (335)
50 KOG3570 MAPK-activating protei 42.1 23 0.0005 46.4 3.7 37 644-680 903-940 (1588)
51 KOG1456 Heterogeneous nuclear 41.6 21 0.00046 42.9 3.1 27 405-433 360-386 (494)
52 KOG0037 Ca2+-binding protein, 36.6 41 0.00089 38.2 4.2 16 161-176 115-130 (221)
53 PF12174 RST: RCD1-SRO-TAF4 (R 36.3 83 0.0018 29.8 5.5 45 375-419 13-57 (70)
54 PF08963 DUF1878: Protein of u 35.8 44 0.00094 34.4 3.8 62 371-432 44-110 (113)
55 PF12301 CD99L2: CD99 antigen 34.1 82 0.0018 34.7 5.9 6 81-86 132-137 (169)
56 KOG0775 Transcription factor S 30.9 1.1E+02 0.0024 35.9 6.4 14 130-143 78-91 (304)
57 PF07466 DUF1517: Protein of u 30.4 80 0.0017 37.5 5.5 8 10-17 9-16 (289)
58 TIGR02877 spore_yhbH sporulati 29.3 55 0.0012 40.0 4.0 15 162-176 159-173 (371)
59 PF04094 DUF390: Protein of un 27.5 90 0.0019 40.9 5.4 12 559-570 407-418 (828)
60 KOG0037 Ca2+-binding protein, 27.0 64 0.0014 36.7 3.7 27 95-122 56-82 (221)
61 PF09060 L27_N: L27_N; InterP 26.1 70 0.0015 28.3 2.9 28 1228-1256 2-29 (49)
62 KOG0339 ATP-dependent RNA heli 25.5 81 0.0018 39.9 4.5 9 85-93 660-668 (731)
63 COG5324 Uncharacterized conser 25.1 85 0.0018 39.4 4.5 126 562-694 523-680 (758)
64 PF12301 CD99L2: CD99 antigen 24.9 1.7E+02 0.0036 32.4 6.3 15 81-95 125-139 (169)
65 KOG3293 Small nuclear ribonucl 24.9 70 0.0015 33.2 3.2 29 41-69 97-125 (134)
66 PRK09807 hypothetical protein; 24.0 64 0.0014 32.9 2.7 49 88-136 2-62 (161)
67 KOG0775 Transcription factor S 23.4 72 0.0016 37.4 3.3 19 85-103 66-86 (304)
68 PF09579 Spore_YtfJ: Sporulati 22.8 34 0.00074 33.3 0.6 7 98-104 69-75 (83)
69 cd07347 harmonin_N_like N-term 22.3 2.5E+02 0.0055 27.3 6.2 59 374-433 6-66 (78)
70 PF08349 DUF1722: Protein of u 22.2 1.7E+02 0.0037 30.0 5.5 49 373-421 55-103 (117)
71 KOG3543 Ca2+-dependent activat 21.6 5.3E+02 0.011 33.6 10.2 19 528-546 623-641 (1218)
72 KOG3590 Protein kinase A ancho 21.3 1.6E+02 0.0036 36.3 5.8 13 93-105 119-131 (602)
73 PF14775 NYD-SP28_assoc: Sperm 21.1 1.8E+02 0.0039 26.8 4.7 56 376-431 2-60 (60)
74 KOG1924 RhoA GTPase effector D 21.1 2.2E+02 0.0047 37.9 7.0 6 377-382 808-813 (1102)
No 1
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-155 Score=1377.09 Aligned_cols=941 Identities=29% Similarity=0.443 Sum_probs=690.7
Q ss_pred CCCCCccccchhhhHHHHHHhhhcCChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCCccccccC
Q 000558 70 MGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITL 149 (1423)
Q Consensus 70 ~g~~~~~~~~dAl~YL~~VK~~F~d~p~~Y~eFL~IMkdfk~~~id~~gVi~rV~~Lf~ghpdLI~GFN~FLP~gy~I~l 149 (1423)
....++|+|.||++||++||.+|..+|++|+.||+||||||+|.||++|||+||+.||+|+|+||+|||+|||+||+|++
T Consensus 120 ~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~ 199 (1163)
T COG5602 120 RIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEG 199 (1163)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC--------------------------------------------CC-------------CCCcchhHHHHHHHHHH
Q 000558 150 DEDE--------------------------------------------AP-------------PKKTVEFEEAITFVNKI 172 (1423)
Q Consensus 150 ~~de--------------------------------------------~p-------------p~~~vef~~Ai~fvnKV 172 (1423)
+.+. || ++..+.|++||.|||+|
T Consensus 200 S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vnkV 279 (1163)
T COG5602 200 SLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVNKV 279 (1163)
T ss_pred ecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHHHH
Confidence 4210 10 02336799999999999
Q ss_pred HHHcCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCCCccccCCcccCCCCCC
Q 000558 173 KKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSA 252 (1423)
Q Consensus 173 K~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP~~~~~~~~~~~~~~~~~n~~~~~r~~ 252 (1423)
|.||+++|+.|..||++|++|++.++++++||.+|+.||+++|||+++|..|||+....+.+..+.. +. .+.
T Consensus 280 K~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~a---q~-----p~~ 351 (1163)
T COG5602 280 KVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANA---QK-----PSK 351 (1163)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCcccccccccccccc---CC-----Ccc
Confidence 9999999999999999999999999999999999999999999999999999999865442111100 00 134
Q ss_pred CCCCcccchhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccCCCccccccccccccccccc
Q 000558 253 GIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQ 332 (1423)
Q Consensus 253 ~~P~~~~~~~~K~~~~~r~~~s~~~~~~sv~rp~~~~d~~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~q 332 (1423)
.+||.+.+..++.- +.++.+++.. ..|.. . .+-.+ .| . +-..++..+
T Consensus 352 ~lPPiG~Fs~p~~a-~~~~~ps~~~-----~~p~~-----~-----------~~~~~---~r--~------d~~~S~s~~ 398 (1163)
T COG5602 352 RLPPIGSFSLPTAA-PEQNRPSLLW-----ESPRS-----I-----------SNISR---YR--A------DLLTSFSRN 398 (1163)
T ss_pred cCCCCCCCCCCCcc-cccCChHHhh-----cCcch-----h-----------ccccc---cc--c------chhhhhhhh
Confidence 45665554433200 0000000000 00000 0 00000 00 0 000000001
Q ss_pred cCCCCccccccccCCCCCCCCCccCchhhhhhhcccccchhhhHHHHHHhhcC-hHHHHHHHHHHHhhhcCCCCHHHHHH
Q 000558 333 RFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQN 411 (1423)
Q Consensus 333 ~~~~k~~~~~~~~~~~~~p~~s~~~~k~~~k~~~~~~~~eEl~FFdKVKk~L~-~~~Y~EFLK~LnLYsQeIIdr~ELv~ 411 (1423)
-.|.+. .+ |. +...++.-.||++||+.|. ...|+|||||||||+|+|||+++||+
T Consensus 399 ~~P~~~---------~~-P~--------------s~~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lve 454 (1163)
T COG5602 399 FVPIRI---------HM-PI--------------SHLSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVE 454 (1163)
T ss_pred cCCccc---------cC-Cc--------------cccCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 111100 00 10 0011122279999999999 99999999999999999999999999
Q ss_pred HHHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCccccccccchhhhhhhhhhhhhhhhhhhhhhhhccc
Q 000558 412 LVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSI 491 (1423)
Q Consensus 412 lV~~fLG~~PDLm~~FK~FLg~~e~~~~~l~g~~~~~sl~~~g~~~~~~~~~~~~r~~~~~~~~~~er~~~~~k~~~kp~ 491 (1423)
++-.|||.+.+||.|||+|++|.+... .+ +. -
T Consensus 455 r~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~--~~---------------------------~ 486 (1163)
T COG5602 455 RLFAFLGSNEELIRWFKAFINYSEPEK-------------------EP--LR---------------------------E 486 (1163)
T ss_pred HHHHHhcCcHHHHHHHHHHhccCCCCC-------------------CC--cc---------------------------c
Confidence 999999999999999999999976210 00 00 0
Q ss_pred cccccCCCcccCcccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHhhhcccchhhHHHH
Q 000558 492 QELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDML 570 (1423)
Q Consensus 492 ~eldls~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~-t~~SED~~F~~~rKNqyEE~LfrcEDERfE~D~~ 570 (1423)
...||+.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+||++||||||||.+
T Consensus 487 ~~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~ 566 (1163)
T COG5602 487 TRKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRH 566 (1163)
T ss_pred cccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHH
Confidence 136889999999999999999999999999999999999999999 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCccccccc----hhHHHHHHHHhhC-CChHHHHHHHHhCcCcchhHHHHHHHH
Q 000558 571 LESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQ 645 (1423)
Q Consensus 571 IE~~~~tI~~Le~l~~~i~~~~~~~~~~~~l~~~l----~~i~~R~I~riYG-d~g~evi~~l~knP~~alPVVL~RLKq 645 (1423)
||++.+||+.|+.++++|..|...++..+.|.++| .+||+++|++||| +||.+||++|+++|++|+||||+|||+
T Consensus 567 Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~ 646 (1163)
T COG5602 567 IEATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKM 646 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999888888766 5899999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhhcccCCcccccccccccchhHHHHHHHHHHHhhhcchhhHHHHhhCCCCCCCCC
Q 000558 646 KQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPH 725 (1423)
Q Consensus 646 K~eEWr~aq~e~nkvWrev~~Kny~KSLDH~~~~FKq~DkK~ls~K~Lv~EI~~i~ee~~~e~d~~~~~~~g~~~~~~p~ 725 (1423)
|++|||+|+|+|||+||+|.+|||+|||||||++||+.|||.||+|.||.||+.++.++..- +. .....-|
T Consensus 647 Kd~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~---~~------~~k~~fq 717 (1163)
T COG5602 647 KDEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV---SI------DDKKVFQ 717 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee---ec------Cccccce
Confidence 99999999999999999999999999999999999999999999999999999777644211 11 1223568
Q ss_pred ceeecCChhHHHHHHHHHHHHhhhccC-CHHHHHHHHHHHHHhhhcccCCCCCCCCccchhhhhccccCCCCCCCCCccc
Q 000558 726 LEYGYSDSNIHEDLYKLVQYSCEEMCS-TKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVE 804 (1423)
Q Consensus 726 l~~~~~D~~I~~D~~~li~~~~~~~~~-~~~~~~ki~~~~~~Fl~~~f~i~~~~~~~~~~ed~~~~~~~~~~~~~~~~~e 804 (1423)
+.|.|+|.-|+.|++.|..-..-.+++ ...+++++..++.+||..||++-.-- .+..+-... ..+.+
T Consensus 718 f~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~~~-----i~~~~y~~~-------~nv~~ 785 (1163)
T COG5602 718 FVFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCIFR-----IIIIVYERL-------LNVKG 785 (1163)
T ss_pred eeeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhh-----hhhhhhhhh-------ccccc
Confidence 999999999999999986533333322 35788999999999999999854210 111111100 00000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCCccccccccccccccCCCcccccccccccccccccchhhhhhHhhhhccccccccc
Q 000558 805 SDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKR 884 (1423)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (1423)
. |.+ |++ +.|.+++
T Consensus 786 ~-------------------ni~-----------------g~k--------~~r~srs---------------------- 799 (1163)
T COG5602 786 L-------------------NID-----------------GLK--------ADRSSRS---------------------- 799 (1163)
T ss_pred c-------------------ccC-----------------Ccc--------ccccccc----------------------
Confidence 0 000 000 0000000
Q ss_pred cchhhhhhhcccccCCCCCCcccccCCCCCCCcccccCCCCCCCccccccccccCCCCCCCCcccccCCCCCcccccccc
Q 000558 885 SGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGA 964 (1423)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 964 (1423)
....| .+.... +|-
T Consensus 800 -~~~~q---~~s~vk--------------------------------------------------------------sgn 813 (1163)
T COG5602 800 -DESAQ---RYSKVK--------------------------------------------------------------SGN 813 (1163)
T ss_pred -chhhh---hHHHhh--------------------------------------------------------------ccc
Confidence 00000 000000 000
Q ss_pred cccCcccccccccCCCCCccccccCccCCCCCcccccccccccccccccccccCCccchhccccccccccccccCCCCCC
Q 000558 965 LRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDA 1044 (1423)
Q Consensus 965 ~~~~~~~~~~~~~~~~~~~~ereegelsp~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 1044 (1423)
+ +..+ +.+++++-
T Consensus 814 ~-~qvs--------------~q~de~ai---------------------------------------------------- 826 (1163)
T COG5602 814 L-EQVS--------------KQIDEYAI---------------------------------------------------- 826 (1163)
T ss_pred c-hhcc--------------cCCchhHH----------------------------------------------------
Confidence 0 0000 00000000
Q ss_pred CCCccccCCccccCCCCCCCCCCCCccccchhhhhhcccccccCCccccccccccCccccccCCCCCCCCchhhhhcccC
Q 000558 1045 DADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVK 1124 (1423)
Q Consensus 1045 ~adde~s~~~s~~~~~~s~~~s~~~e~~~~~~~~e~~~~~~~~d~k~es~gea~~~~~~~~~~~d~~~~~~~~~~~~~~k 1124 (1423)
+|| ..++ -+| ++.+ +.+.-.|.+. .
T Consensus 827 --ede-------~k~p--------~hp--d~l~------------------------eh~~skgi~e----n-------- 851 (1163)
T COG5602 827 --EDE-------IKEP--------THP--DGLK------------------------EHNISKGISE----N-------- 851 (1163)
T ss_pred --HHH-------hcCC--------CCC--chHH------------------------Hhhhhhccch----h--------
Confidence 000 0000 000 0000 0000001100 0
Q ss_pred cccccCCCCcccccCccceeeecCchHhHHHHHHHHHHHHHHHHhhchhhhhhcccCcCCCchHHHHHHHHHHHHhhcCC
Q 000558 1125 PLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGS 1204 (1423)
Q Consensus 1125 pl~~~~~~~~~~~~~~~~~FfgN~~~YvFfRL~qiLYeRL~~~K~~~~~~e~~~k~~~d~~~~~~Y~~fL~~l~~LldG~ 1204 (1423)
.++ -...+||||.++||||||+..+||||+.+|....+..+- .....-|.+.|.+|++|+.|.
T Consensus 852 --ek~---------~i~~~~fgns~myvffrl~~~~yerLyeik~~~e~vti~------~~~~g~Yen~l~~s~rli~g~ 914 (1163)
T COG5602 852 --EKQ---------VIALTEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTIG------MMEPGHYENELWDSYRLIFGA 914 (1163)
T ss_pred --hHH---------HHHHhhcccceeeeehhhhHhHHHHHHHHHHHHHHhhhh------hcccchhhhHHHHHHHHHhcc
Confidence 011 112469999999999999999999999999776554321 122348999999999999999
Q ss_pred CCchhhHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcCCC-ccccHHHHHHHHhhc-CCC
Q 000558 1205 IDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPG-KQIDSVYYENARVLL-HEE 1282 (1423)
Q Consensus 1205 iD~~~FED~lR~~fG~~aY~lFTiDKLI~~lvKQlq~ivsDe~~~~ll~L~~~Er~r~~~-~~~di~Yr~~Ae~ll-~DE 1282 (1423)
+++.+||+.+|.+|++++|++||||||.+.|+||+|+|++|.|...++.||....+..++ ...++.||..+|.+| +||
T Consensus 915 l~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e 994 (1163)
T COG5602 915 LTPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDE 994 (1163)
T ss_pred ccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchh
Confidence 999999999999999999999999999999999999999999999999999766665543 457899999999776 899
Q ss_pred CEEEEEEecCCCeEEEEEecCC---cCCccccccCCchHHHHHHhhhhcccccCCC----CCCcccccCccccccCchhh
Q 000558 1283 NIYRIQLSSSPSRLSIQLMDNV---IEKPEAFAVTMDPNFAAYLLNDFLSAFLGKK----EPHAVVLRRNKRRFEGLDEL 1355 (1423)
Q Consensus 1283 niyRie~~~~~~~ltIqLld~~---~d~~e~~~~s~d~~w~~Yv~s~f~~~~pte~----~~~~vFL~RNl~~~~~~~e~ 1355 (1423)
+||||+|.+..+++.||.|-.. .+++.++ ...|.+||+ +|.-.++||+ ..+.|||.|||.+.+..+..
T Consensus 995 ~~Fr~~w~~~~k~~~Iq~~~~adLt~~~~~~~----~~~wkyYV~-sYai~h~TEgi~~~~~k~PFL~R~ie~~~~v~~l 1069 (1163)
T COG5602 995 ILFRFCWINKFKSFGIQIMKRADLTVDQSLDT----QRVWKYYVQ-SYAIQHLTEGISYKNYKCPFLCRNIEKERTVEQL 1069 (1163)
T ss_pred heeeeeecchhheeeeeEeeccccccccccCh----HHHHHHHHH-hhccccccccCchhhccchHHHHHHHhhhhHHHH
Confidence 9999999999999999999442 2222222 237999999 6998899998 35899999999874322221
Q ss_pred HH--HhhhcCCceeecCcEEEEecCceeEEEEcCCceEEEEecccccccccchhhhHHHHHHHHhhhc
Q 000558 1356 SA--ACMAMEGVQLVNGLECRIACNSYKITYVLDTEDVFYRRKRRRTYRARSSHYNQARVLRFHRFLS 1421 (1423)
Q Consensus 1356 ~~--~~~~~~~v~v~~gLeckI~~~SyK~~Yv~~TED~f~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1421 (1423)
.. .......-...+||+..+|+.|||++|.|+|||..+-....+..- ..-..+++|.+||++|++
T Consensus 1070 ~s~~q~~l~~~h~~~s~lq~f~~~dt~k~~~~pnte~~yi~~s~l~~~~-s~fldcq~rk~~wr~We~ 1136 (1163)
T COG5602 1070 VSRLQTKLLRSHELVSGLQAFLCLDTFKLLYLPNTEDSYIDASYLRLRD-SDFLDCQKRKQRWRNWES 1136 (1163)
T ss_pred HhhhhHHHHHHHHHhccceeeeeeccceeeeccCCccchhhhhhhhhhh-hHHHHHHHHHHHHHHHHH
Confidence 00 001111224468999999999999999999999988666555111 112346789999999986
No 2
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=100.00 E-value=2.5e-43 Score=338.74 Aligned_cols=100 Identities=56% Similarity=0.862 Sum_probs=96.6
Q ss_pred CCcccCcccccCCCCCCCCCCCCccccccccccCeeeecccC-CCCcccchhccchhhHHhhhcccchhhHHHHHHHHHH
Q 000558 498 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSG-SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSS 576 (1423)
Q Consensus 498 ~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~t~~-SED~~F~~~rKNqyEE~LfrcEDERfE~D~~IE~~~~ 576 (1423)
+|++||||||+|||+|+.++||||++||++||||+|||||+| |||++|++||||||||+|||||||||||||+||++.+
T Consensus 1 ~c~~~gpSYr~Lpk~~~~~~cSgR~~l~~~VLND~wvsvps~~SED~~F~~~rKNqyEE~Lfr~EDeR~E~D~~ie~~~~ 80 (102)
T smart00761 1 NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEALFRCEDERFELDMVIESNSS 80 (102)
T ss_pred CCcccCcchhhCCcccCCCCCCCccHHHHHHhCCceEeecCCcccccchhhhhccHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999866 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCC
Q 000558 577 TAKRAEELLNSINENKITLET 597 (1423)
Q Consensus 577 tI~~Le~l~~~i~~~~~~~~~ 597 (1423)
||++||+|+++|+.|+++++.
T Consensus 81 ti~~le~l~~~~~~~~~~e~~ 101 (102)
T smart00761 81 TIKLLEEILNKIEDMSDEERA 101 (102)
T ss_pred HHHHHHHHHHHHhcCChhhcc
Confidence 999999999999999887654
No 3
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=100.00 E-value=2.3e-41 Score=327.41 Aligned_cols=100 Identities=60% Similarity=0.914 Sum_probs=97.3
Q ss_pred CCcccCcccccCCCCCCCCCCCCccccccccccCeeeecccCCCCcccchhccchhhHHhhhcccchhhHHHHHHHHHHH
Q 000558 498 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSST 577 (1423)
Q Consensus 498 ~c~r~gpSYR~LPk~~~~~~cSgR~eL~~~VLND~WVS~t~~SED~~F~~~rKNqyEE~LfrcEDERfE~D~~IE~~~~t 577 (1423)
+|++||||||+||++|+.++||||++||++||||+|||||+||||++|++||||||||+|||||||||||||+||+|++|
T Consensus 1 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wvs~p~~sEd~~f~~~kKnqyEE~lf~~EDeR~E~D~~ie~~~~t 80 (101)
T PF08295_consen 1 NCERCGPSYRLLPKSYQNPPCSGRDELCWSVLNDTWVSVPSWSEDSSFKAMKKNQYEEALFRCEDERFELDMLIESNRST 80 (101)
T ss_pred CCCcCccchhhCCcccCCCCCCCCchhhhhhcCCEEEEeCCccccccccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 000558 578 AKRAEELLNSINENKITLET 597 (1423)
Q Consensus 578 I~~Le~l~~~i~~~~~~~~~ 597 (1423)
|+.|++|+++|+.|+++++.
T Consensus 81 I~~Le~l~~~i~~~~~ee~~ 100 (101)
T PF08295_consen 81 IKLLEELQEKIQDMSPEERA 100 (101)
T ss_pred HHHHHHHHHHHhcCCHhHhc
Confidence 99999999999999987764
No 4
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-38 Score=348.65 Aligned_cols=160 Identities=63% Similarity=1.040 Sum_probs=148.6
Q ss_pred CCccccchhhhHHHHHHhhhcCChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCCccccccCCCC
Q 000558 73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDED 152 (1423)
Q Consensus 73 ~~~~~~~dAl~YL~~VK~~F~d~p~~Y~eFL~IMkdfk~~~id~~gVi~rV~~Lf~ghpdLI~GFN~FLP~gy~I~l~~d 152 (1423)
.++++++||++||++||.+|+++|++|++||+||+|||+++||+++||+||++||+|||+||+|||+|||+||+|+++.+
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred C-------------CCCCCc-----------chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 000558 153 E-------------APPKKT-----------VEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVA 208 (1423)
Q Consensus 153 e-------------~pp~~~-----------vef~~Ai~fvnKVK~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~Va 208 (1423)
. ..++.. +++.+|++|+||||+||++++++|++||+||++|+++++++.+||++|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~y~~~~ks~~e~~~eV~ 173 (231)
T KOG4204|consen 94 AKDEFTIYGATSYLPSPKVAFHEEILKLLEDVEFDRAISFVNKLKTRFQGDDHVYKSFLEILRMYQEGNKSVSEVYQEVE 173 (231)
T ss_pred cccccccccccccCCCccccccchhhhhcccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 1 123343 8899999999999999999999999999999999999999999999999
Q ss_pred HhhccChhHHHHHhhhCCCCCCCC
Q 000558 209 SLFEDHADLLEEFTRFLPDTSATS 232 (1423)
Q Consensus 209 ~LF~~hpDLL~eF~~FLP~~~~~~ 232 (1423)
.||++|+||+.+|.+|||......
T Consensus 174 ~L~~~~~DL~~ef~~~lp~~~~~~ 197 (231)
T KOG4204|consen 174 ALLQGHEDLLEEFSHFLPTDPATG 197 (231)
T ss_pred HHHccCHHHHHHHHhhccCCcccc
Confidence 999999999999999999985544
No 5
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.84 E-value=2.4e-20 Score=206.16 Aligned_cols=178 Identities=25% Similarity=0.448 Sum_probs=137.6
Q ss_pred CCcchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCC
Q 000558 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1423)
Q Consensus 157 ~~~vef~~Ai~fvnKVK~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP~~~~~~~~~~ 236 (1423)
.+++++++|++||++||.+|+++|++|.+||+||++|+.+.++..+|+++|+.||+||||||.+|+.|||........+.
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999877654211
Q ss_pred CccccCCcccCCCCCCCCCCcccchhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccCCCc
Q 000558 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1423)
Q Consensus 237 ~~~~~~~n~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~sv~rp~~~~d~~~~~~~~~q~~~~~k~~~~~~~~~~ 316 (1423)
+... ..++.. +...|.+. . .
T Consensus 94 ~~~~-----------~~~~~~-----------------------~~~~~~~~------------------~-----~--- 113 (231)
T KOG4204|consen 94 AKDE-----------FTIYGA-----------------------TSYLPSPK------------------V-----A--- 113 (231)
T ss_pred cccc-----------cccccc-----------------------cccCCCcc------------------c-----c---
Confidence 1000 000000 00000000 0 0
Q ss_pred cccccccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhcccccchhhhHHHHHHhhcC--hHHHHHHHH
Q 000558 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLC--SDDYQAFLK 394 (1423)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~~~k~~~~~~~~~~~~~p~~s~~~~k~~~k~~~~~~~~eEl~FFdKVKk~L~--~~~Y~EFLK 394 (1423)
.+ .+....+.+ ..+.+++.|.+|||+++. .++|+.||.
T Consensus 114 -----------------~~--------------~~~~~~~~~---------~~~~~a~~fv~klk~rf~~~~~v~~s~l~ 153 (231)
T KOG4204|consen 114 -----------------FH--------------EEILKLLED---------VEFDRAISFVNKLKTRFQGDDHVYKSFLE 153 (231)
T ss_pred -----------------cc--------------chhhhhccc---------chHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00 000000000 146688999999999999 779999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000558 395 CLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 434 (1423)
Q Consensus 395 ~LnLYsQeIIdr~ELv~lV~~fLG~~PDLm~~FK~FLg~~ 434 (1423)
+|++|.++-.+.+|+...|..+|++|+||+.+|..||..+
T Consensus 154 il~~y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~ 193 (231)
T KOG4204|consen 154 ILRMYQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTD 193 (231)
T ss_pred HHHHHhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999753
No 6
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.84 E-value=2.8e-20 Score=224.73 Aligned_cols=211 Identities=24% Similarity=0.392 Sum_probs=144.8
Q ss_pred CCcchhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCC
Q 000558 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1423)
Q Consensus 157 ~~~vef~~Ai~fvnKVK~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP~~~~~~~~~~ 236 (1423)
-+++++.+|++||++||.+|.++|++|..||+||++|+.+-+++.+|+.+|+.||+|.|+||++|+.|||.+.....+..
T Consensus 123 ~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S~~ 202 (1163)
T COG5602 123 YRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGSLP 202 (1163)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999977654211
Q ss_pred CccccCCcccCCCCCCCCCCcccchhhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccCCCc
Q 000558 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1423)
Q Consensus 237 ~~~~~~~n~~~~~r~~~~P~~~~~~~~K~~~~~r~~~s~~~~~~sv~rp~~~~d~~~~~~~~~q~~~~~k~~~~~~~~~~ 316 (1423)
.+ ++ .+...+.+..|...+. +.- ....+...++....+|.++.+
T Consensus 203 ~~---~~-s~l~vtTP~gp~s~~p-v~s-----s~y~a~~n~~qrts~p~lps~-------------------------- 246 (1163)
T COG5602 203 QP---NG-SRLHVTTPQGPLSSPP-VQS-----SYYVAPCNHDQRTSHPTLPSD-------------------------- 246 (1163)
T ss_pred CC---CC-CeeeecCCCCCCCCCC-ccc-----ccccccccccccccCCCCccc--------------------------
Confidence 10 00 1111111111111110 000 000000000001111110000
Q ss_pred cccccccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhcccccchhhhHHHHHHhhcC--hHHHHHHHH
Q 000558 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKITVAGIYNQGFIFCDKVKEKLC--SDDYQAFLK 394 (1423)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~~~k~~~~~~~~~~~~~p~~s~~~~k~~~k~~~~~~~~eEl~FFdKVKk~L~--~~~Y~EFLK 394 (1423)
.| .+..++...++....+. +..+++++.|.+|||.++. +++|.+||.
T Consensus 247 --------------~Q-----------~e~s~~~~~~sd~~~~~------~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~ 295 (1163)
T COG5602 247 --------------SQ-----------PEPSAPSHMPSDARGKH------QVDFNQAIIFVNKVKVRFQNNPEMYYDFLD 295 (1163)
T ss_pred --------------cC-----------CCCCCcccCCccccccc------ceehhHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 00 00000000011000111 2468999999999999999 999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000558 395 CLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 434 (1423)
Q Consensus 395 ~LnLYsQeIIdr~ELv~lV~~fLG~~PDLm~~FK~FLg~~ 434 (1423)
+|.-|..+..+.+|++.+|+.+|..+|||+++||.||+..
T Consensus 296 ~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~ 335 (1163)
T COG5602 296 SLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDS 335 (1163)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999999853
No 7
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.30 E-value=2.4e-12 Score=109.31 Aligned_cols=47 Identities=40% Similarity=0.795 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHhccCChhhHHHHHHHHhccChhhhhhhhccCC
Q 000558 96 REKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLP 142 (1423)
Q Consensus 96 p~~Y~eFL~IMkdfk~~~id~~gVi~rV~~Lf~ghpdLI~GFN~FLP 142 (1423)
|++|++||+||++|+.++++..+|+++|+.||+||||||.+|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 89999999999999999999999999999999999999999999998
No 8
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.23 E-value=1.2e-11 Score=105.17 Aligned_cols=47 Identities=53% Similarity=0.863 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhhhcCCcHHHHHHHHHHhhccChhHHHHHhhhCC
Q 000558 180 EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1423)
Q Consensus 180 P~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~~hpDLL~eF~~FLP 226 (1423)
|++|++||+||++|+++.++..+|+++|+.||++||||+++|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 79999999999999999999999999999999999999999999998
No 9
>PTZ00146 fibrillarin; Provisional
Probab=95.80 E-value=0.014 Score=68.02 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=2.4
Q ss_pred cccccc
Q 000558 491 IQELDL 496 (1423)
Q Consensus 491 ~~eldl 496 (1423)
+..++|
T Consensus 267 ~e~v~L 272 (293)
T PTZ00146 267 KEQLTL 272 (293)
T ss_pred EEEEec
Confidence 333443
No 10
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=94.97 E-value=0.034 Score=64.54 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=5.3
Q ss_pred CCccCCCCCCC
Q 000558 16 RPLTTAPPRGE 26 (1423)
Q Consensus 16 ~~~~~~~~~~~ 26 (1423)
||+--+||..|
T Consensus 308 R~nE~~ppppe 318 (465)
T KOG3973|consen 308 RTNEMVPPPPE 318 (465)
T ss_pred CcccCCCCCCC
Confidence 45555555443
No 11
>PLN03138 Protein TOC75; Provisional
Probab=94.14 E-value=0.039 Score=71.53 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 000558 386 SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDL 416 (1423)
Q Consensus 386 ~~~Y~EFLK~LnLYsQeIIdr~ELv~lV~~f 416 (1423)
+++.+||+..+ +.++.+++++|..-+..|
T Consensus 282 ~~v~~e~f~~~--~~~gklN~e~Lq~die~I 310 (796)
T PLN03138 282 KSVRREVLGML--RDQGKVSARLLQRIRDRV 310 (796)
T ss_pred hHHHHHHHhhh--ccCCcCCHHHHHHHHHHH
Confidence 67788888777 466678888876654443
No 12
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=93.77 E-value=0.048 Score=65.24 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 000558 386 SDDYQAFLKC 395 (1423)
Q Consensus 386 ~~~Y~EFLK~ 395 (1423)
+++|+-|||.
T Consensus 201 PQafdlFLKh 210 (641)
T KOG3915|consen 201 PQAFDLFLKH 210 (641)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 13
>PLN03138 Protein TOC75; Provisional
Probab=93.18 E-value=0.076 Score=68.95 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=6.3
Q ss_pred cHHHHHHHHHHhh
Q 000558 199 DINEVYSEVASLF 211 (1423)
Q Consensus 199 si~eV~~~Va~LF 211 (1423)
+..+|.+.+..|+
T Consensus 183 trsqLq~dv~~I~ 195 (796)
T PLN03138 183 TKAQLQKELETLA 195 (796)
T ss_pred CHHHHHHHHHHHH
Confidence 4444555555444
No 14
>COG4371 Predicted membrane protein [Function unknown]
Probab=93.13 E-value=0.34 Score=54.60 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=9.0
Q ss_pred hHHHHHHHHhccChhhh
Q 000558 118 GVIARVKDLFKGHNNLI 134 (1423)
Q Consensus 118 gVi~rV~~Lf~ghpdLI 134 (1423)
.|+....-.+-.||+-.
T Consensus 181 ~vlQEA~LalLRHPEyW 197 (334)
T COG4371 181 RVLQEAALALLRHPEYW 197 (334)
T ss_pred HHHHHHHHHHHcCCcee
Confidence 35555444555677643
No 15
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=92.42 E-value=0.12 Score=62.16 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=7.9
Q ss_pred ChHHHHHHHHHH
Q 000558 179 DEHVYKSFLEIL 190 (1423)
Q Consensus 179 ~P~vYk~FLeIL 190 (1423)
=|.+|.=||+-|
T Consensus 200 LPQafdlFLKhl 211 (641)
T KOG3915|consen 200 LPQAFDLFLKHL 211 (641)
T ss_pred cHHHHHHHHHHH
Confidence 366777777765
No 16
>PHA00370 III attachment protein
Probab=90.90 E-value=0.81 Score=51.83 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=7.7
Q ss_pred hhhHHHHHHhhhc
Q 000558 81 ALTYLKEVKDMFQ 93 (1423)
Q Consensus 81 Al~YL~~VK~~F~ 93 (1423)
+..--+++|+.+-
T Consensus 148 ~~kma~a~kdalt 160 (297)
T PHA00370 148 YPKMANANKDALT 160 (297)
T ss_pred cHHHhhhhhhhhc
Confidence 4444566777665
No 17
>PHA00370 III attachment protein
Probab=87.50 E-value=0.69 Score=52.38 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHHc
Q 000558 161 EFEEAITFVNKIKKRF 176 (1423)
Q Consensus 161 ef~~Ai~fvnKVK~RF 176 (1423)
+|.-.-..|+.||--|
T Consensus 257 e~~I~CdKId~~k~v~ 272 (297)
T PHA00370 257 EFIIGCDKINDFKGVF 272 (297)
T ss_pred hhhhcchhHHHHHHHH
Confidence 3333445555555433
No 18
>COG4371 Predicted membrane protein [Function unknown]
Probab=86.72 E-value=0.72 Score=52.15 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhccChh
Q 000558 200 INEVYSEVASLFEDHAD 216 (1423)
Q Consensus 200 i~eV~~~Va~LF~~hpD 216 (1423)
...|.++.+-.+--||+
T Consensus 179 r~~vlQEA~LalLRHPE 195 (334)
T COG4371 179 RARVLQEAALALLRHPE 195 (334)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 34566665555555554
No 19
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=84.64 E-value=1.6 Score=49.69 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.5
Q ss_pred hccccccccCCCcc
Q 000558 488 AKSIQELDLSNCQR 501 (1423)
Q Consensus 488 ~kp~~eldls~c~r 501 (1423)
.+|...|-|.-|++
T Consensus 288 lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 288 LKPKEQVTLEPFER 301 (317)
T ss_pred cCchheeccccccC
Confidence 45656666666655
No 20
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=82.78 E-value=0.37 Score=53.91 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=9.8
Q ss_pred CCCccccchhhhHHH
Q 000558 72 TSQKLTTSDALTYLK 86 (1423)
Q Consensus 72 ~~~~~~~~dAl~YL~ 86 (1423)
.+..|.++.-.-||+
T Consensus 26 ask~l~iq~KrfYlD 40 (263)
T KOG3074|consen 26 ASKRLQIQHKRFYLD 40 (263)
T ss_pred hhhhhhhhhheEEEE
Confidence 356677777777775
No 21
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=80.18 E-value=2.8 Score=51.60 Aligned_cols=39 Identities=18% Similarity=0.334 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHhhc
Q 000558 160 VEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE 212 (1423)
Q Consensus 160 vef~~Ai~fvnKVK~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~ 212 (1423)
-.++-..++.+.|+-+.+-. +-....+.++-.+|..|..
T Consensus 161 s~l~~~RTlr~al~Rria~~--------------~~~~~~~~~~~~~~~~~~~ 199 (421)
T PF04285_consen 161 SNLDKKRTLREALKRRIALG--------------RPRRRELRELEEELEELEA 199 (421)
T ss_pred HHHHHHHHhhHHHHHHHHhc--------------CCccccHHHHHHHHHHHhc
Confidence 35566666666666654321 1123345666666766664
No 22
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.59 E-value=4.7 Score=48.19 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHH------HHHhccCChhhHHHHHHHHhccC
Q 000558 95 QREKYDMFLEVMK------DFKAQRTDTAGVIARVKDLFKGH 130 (1423)
Q Consensus 95 ~p~~Y~eFL~IMk------dfk~~~id~~gVi~rV~~Lf~gh 130 (1423)
+|++--.|.++|+ .|.+.. -+..||..++.+|.|-
T Consensus 336 dp~v~aal~d~~~np~n~~kyq~n~-kv~~~i~kl~~kf~g~ 376 (377)
T KOG1308|consen 336 DPEVQAALMDVSQNPANMMKYQNNP-KVMDVISKLSQKFPGM 376 (377)
T ss_pred ChHHHhhhhhcccChHHHHHhccCh-HHHHHHHHHHhhcCCC
Confidence 4666666666643 344433 2467899999999874
No 23
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=74.50 E-value=11 Score=36.33 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCCcHHHHHHHHHHhhc--cChhHHHHHhhhCCCCCCC
Q 000558 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE--DHADLLEEFTRFLPDTSAT 231 (1423)
Q Consensus 163 ~~Ai~fvnKVK~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~Va~LF~--~hpDLL~eF~~FLP~~~~~ 231 (1423)
+.|..|..||..-+.++|..=....++|++|..+ +.++.+...+..++. .|--|+++-..|+|.....
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~-k~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAAD-KNVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 5699999999999999999999999999999664 456777777777774 5667999999999987543
No 24
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=72.59 E-value=47 Score=37.82 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.6
Q ss_pred CChHHHHHHHHHHHHh
Q 000558 178 NDEHVYKSFLEILNMY 193 (1423)
Q Consensus 178 ~~P~vYk~FLeIL~~y 193 (1423)
.||+|-.+.|..|+.=
T Consensus 148 gdP~VreqVLsAMqEe 163 (238)
T PF02084_consen 148 GDPEVREQVLSAMQEE 163 (238)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 6899999999999864
No 25
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=71.94 E-value=12 Score=36.13 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=56.9
Q ss_pred chhhhHHHHHHhhhcCChHHHHHHHHHHHHHHhccCChhhHHHHHHHHhcc--ChhhhhhhhccCCccccc
Q 000558 79 SDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKG--HNNLIFGFNTFLPKGYEI 147 (1423)
Q Consensus 79 ~dAl~YL~~VK~~F~d~p~~Y~eFL~IMkdfk~~~id~~gVi~rV~~Lf~g--hpdLI~GFN~FLP~gy~I 147 (1423)
+-|..|..+|..-+.++|.+-++.+++++.|-+.+ ++..++..+.-++.. |-.||...-.|+|.-++.
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k-~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAADK-NVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 45899999999999999999999999999998754 667777777777765 567899999999986653
No 26
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=71.73 E-value=9.2 Score=36.28 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=12.5
Q ss_pred CCccccch----hhhHHHHHHhhhcCChH
Q 000558 73 SQKLTTSD----ALTYLKEVKDMFQDQRE 97 (1423)
Q Consensus 73 ~~~~~~~d----Al~YL~~VK~~F~d~p~ 97 (1423)
.++.|.++ =-.|....+..+-.+-+
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~~~LD~~Ld 65 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTKSKLDAELD 65 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566554 22466555555543333
No 27
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=70.39 E-value=2.7 Score=47.33 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=5.9
Q ss_pred HHHHHHHHHh
Q 000558 184 KSFLEILNMY 193 (1423)
Q Consensus 184 k~FLeIL~~y 193 (1423)
-.|+++|+.|
T Consensus 71 aef~d~l~~f 80 (263)
T KOG3074|consen 71 AEFRDILNDF 80 (263)
T ss_pred HHHHHHHHHH
Confidence 4566666655
No 28
>PTZ00110 helicase; Provisional
Probab=66.96 E-value=12 Score=47.82 Aligned_cols=10 Identities=0% Similarity=0.126 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 000558 755 DQLNKAMKLW 764 (1423)
Q Consensus 755 ~~~~ki~~~~ 764 (1423)
++++++++-|
T Consensus 414 ~eR~~il~~F 423 (545)
T PTZ00110 414 EERTWVLNEF 423 (545)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 29
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=65.60 E-value=6.3 Score=48.75 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHhhhc
Q 000558 386 SDDYQAFLKCLHIYSN 401 (1423)
Q Consensus 386 ~~~Y~EFLK~LnLYsQ 401 (1423)
+-.=..|.++|.-|.+
T Consensus 302 eGda~rF~~i~~~Y~k 317 (419)
T PRK10930 302 QGEVARFAKLLPEYKA 317 (419)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 4445577888777765
No 30
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=65.17 E-value=9.7 Score=41.79 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.2
Q ss_pred ChhHHHHHhhhCCCCCC
Q 000558 214 HADLLEEFTRFLPDTSA 230 (1423)
Q Consensus 214 hpDLL~eF~~FLP~~~~ 230 (1423)
.||-|.-..+|||....
T Consensus 128 ~p~KllPl~RFLP~p~~ 144 (215)
T KOG3262|consen 128 DPDKLLPLDRFLPQPVG 144 (215)
T ss_pred cccccCcHhhcCCCCCC
Confidence 35555566789998733
No 31
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=64.99 E-value=15 Score=42.70 Aligned_cols=29 Identities=7% Similarity=0.310 Sum_probs=22.3
Q ss_pred hHHHHHHhhhcCChHHHHHHHHHHHHHHh
Q 000558 83 TYLKEVKDMFQDQREKYDMFLEVMKDFKA 111 (1423)
Q Consensus 83 ~YL~~VK~~F~d~p~~Y~eFL~IMkdfk~ 111 (1423)
..+++++.+|.=+...-+.|+..|.+|-.
T Consensus 83 e~i~~i~~~~GFDKp~~eR~~~Ml~~y~r 111 (364)
T COG4174 83 ELIAEIEKQYGFDKPPLERYFLMLWDYAR 111 (364)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 46789999999443445789999999974
No 32
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=63.31 E-value=12 Score=44.17 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHhhccChhH
Q 000558 199 DINEVYSEVASLFEDHADL 217 (1423)
Q Consensus 199 si~eV~~~Va~LF~~hpDL 217 (1423)
-+..|.+++.-.|--|||.
T Consensus 138 Gl~~~L~E~~l~LLR~~~~ 156 (289)
T PF07466_consen 138 GLARVLQETTLALLRHPEY 156 (289)
T ss_pred HHHHHHHHHHHHHHhCcCc
Confidence 3456666666666666655
No 33
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=62.29 E-value=44 Score=37.99 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=5.2
Q ss_pred hccChhhhh
Q 000558 127 FKGHNNLIF 135 (1423)
Q Consensus 127 f~ghpdLI~ 135 (1423)
|+.|-+|+.
T Consensus 137 LRHHSNLLA 145 (238)
T PF02084_consen 137 LRHHSNLLA 145 (238)
T ss_pred HHHHHHHHh
Confidence 455666665
No 34
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=62.18 E-value=8.3 Score=43.78 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.3
Q ss_pred cchhhhHHHHHHhhhcC
Q 000558 78 TSDALTYLKEVKDMFQD 94 (1423)
Q Consensus 78 ~~dAl~YL~~VK~~F~d 94 (1423)
--|+...|..|..+++.
T Consensus 70 ~peea~r~~~~Qaqygs 86 (277)
T PF05387_consen 70 SPEEAGRAQRVQAQYGS 86 (277)
T ss_pred ChhHhhhhccchhhhcc
Confidence 37888999999999983
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=59.48 E-value=7.9 Score=42.57 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 000558 99 YDMFLEVMK 107 (1423)
Q Consensus 99 Y~eFL~IMk 107 (1423)
+..+-+.|+
T Consensus 129 WQDLKDHmR 137 (241)
T KOG0105|consen 129 WQDLKDHMR 137 (241)
T ss_pred hHHHHHHHH
Confidence 333444444
No 36
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=57.08 E-value=16 Score=46.11 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=5.5
Q ss_pred HHHHHHHHHh
Q 000558 408 DLQNLVTDLL 417 (1423)
Q Consensus 408 ELv~lV~~fL 417 (1423)
||-.+|..||
T Consensus 372 e~~~lv~tli 381 (727)
T PF05642_consen 372 ELKSLVNTLI 381 (727)
T ss_pred HHHHHHHHHH
Confidence 4555555555
No 37
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=56.16 E-value=13 Score=37.06 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCccccchhhhHHHHHHhhhc
Q 000558 64 GGMTAGMGTSQKLTTSDALTYLKEVKDMFQ 93 (1423)
Q Consensus 64 ~g~ggG~g~~~~~~~~dAl~YL~~VK~~F~ 93 (1423)
+++++.......++......|-+.|+..++
T Consensus 51 ~~~s~~~~s~~~i~t~s~~dfW~~L~~~l~ 80 (98)
T PF07655_consen 51 SGGSGSSSSGTSITTESKSDFWEDLQKTLQ 80 (98)
T ss_pred CCccccccCceEEEEEECCchHHHHHHHHH
Confidence 333345556778888888888888877653
No 38
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=55.73 E-value=19 Score=46.26 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=5.5
Q ss_pred hHHHHHHhhc
Q 000558 375 IFCDKVKEKL 384 (1423)
Q Consensus 375 ~FFdKVKk~L 384 (1423)
+|.-+|++++
T Consensus 556 ~~~~~~~~~~ 565 (572)
T PRK04537 556 SLLGRIGRRL 565 (572)
T ss_pred HHHHHHHHHH
Confidence 4555665554
No 39
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=54.76 E-value=19 Score=45.37 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=4.1
Q ss_pred HHHHhhc
Q 000558 378 DKVKEKL 384 (1423)
Q Consensus 378 dKVKk~L 384 (1423)
.++|+.|
T Consensus 363 ~~lk~fl 369 (727)
T PF05642_consen 363 EKLKKFL 369 (727)
T ss_pred HHHHHHH
Confidence 4566655
No 40
>PRK05325 hypothetical protein; Provisional
Probab=53.37 E-value=13 Score=45.71 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHcC
Q 000558 161 EFEEAITFVNKIKKRFH 177 (1423)
Q Consensus 161 ef~~Ai~fvnKVK~RF~ 177 (1423)
..+--..+.+.+|.|.+
T Consensus 146 ~l~~~RT~r~al~Rria 162 (401)
T PRK05325 146 NLDKKRTLREALKRRIA 162 (401)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 44555667777777665
No 41
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.85 E-value=27 Score=41.40 Aligned_cols=13 Identities=8% Similarity=0.243 Sum_probs=7.0
Q ss_pred HHHHHHHhhccCh
Q 000558 203 VYSEVASLFEDHA 215 (1423)
Q Consensus 203 V~~~Va~LF~~hp 215 (1423)
+|..+...|+-.|
T Consensus 180 lyR~~l~~L~l~~ 192 (362)
T KOG3875|consen 180 LYRLLLKMLKLSP 192 (362)
T ss_pred HHHHHHHHhCCCc
Confidence 5555555555443
No 42
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.57 E-value=35 Score=44.60 Aligned_cols=39 Identities=18% Similarity=0.426 Sum_probs=24.6
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhhcccCCcccccccccccchhHHHHHHHHHH
Q 000558 650 WTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFK 701 (1423)
Q Consensus 650 Wr~aq~e~nkvWrev~~Kny~KSLDH~~~~FKq~DkK~ls~K~Lv~EI~~i~ 701 (1423)
.+..+..+.+.|.+.-+- | ..|-|-.+..-+++.|++.+
T Consensus 948 ls~M~~~M~~lye~L~eY------------y-aFd~kkysmEEFFaDi~tFr 986 (1102)
T KOG1924|consen 948 LSSMHGNMEKLYESLGEY------------Y-AFDPKKYSMEEFFADIRTFR 986 (1102)
T ss_pred HHHHHHHHHHHHHHHHHH------------e-ecCcccCcHHHHHHHHHHHH
Confidence 344445566667665442 1 24667788888888888764
No 43
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=46.29 E-value=24 Score=42.29 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=5.2
Q ss_pred CCCcccCCc
Q 000558 10 GGSQFKRPL 18 (1423)
Q Consensus 10 ~~~q~~~~~ 18 (1423)
-|-.+|...
T Consensus 40 KG~KLKK~~ 48 (437)
T KOG4462|consen 40 KGKKLKKAT 48 (437)
T ss_pred hcceeccee
Confidence 356666654
No 44
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=45.42 E-value=33 Score=44.60 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.2
Q ss_pred cccchh
Q 000558 560 CEDDRF 565 (1423)
Q Consensus 560 cEDERf 565 (1423)
++|-|=
T Consensus 483 ~~~a~g 488 (828)
T PF04094_consen 483 VDDARG 488 (828)
T ss_pred HHhhhh
Confidence 333333
No 45
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=44.29 E-value=23 Score=43.20 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=17.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000558 391 AFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 431 (1423)
Q Consensus 391 EFLK~LnLYsQeIIdr~ELv~lV~~fLG~~PDLm~~FK~FL 431 (1423)
+.|.++|+|.=.-|... ..+..||..|+.-|
T Consensus 317 ~llp~~~~f~Y~Ei~~~----------~~~~~l~~~y~~~i 347 (371)
T TIGR02877 317 KLLEVCNLFGYGEIMPY----------GYSNTLKNKFKNEI 347 (371)
T ss_pred HHHHhhheEEEEEecCC----------CCcchHHHHHHhhh
Confidence 46777777765444320 23456777776534
No 46
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=44.15 E-value=23 Score=42.03 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCC
Q 000558 166 ITFVNKIKKRFHND 179 (1423)
Q Consensus 166 i~fvnKVK~RF~~~ 179 (1423)
+.|++.++.+|...
T Consensus 152 ~~f~~~L~~~~ga~ 165 (292)
T PF04228_consen 152 LSFFDELQQRFGAS 165 (292)
T ss_pred hHHHHHHHHHhCCc
Confidence 35888888888654
No 47
>PRK05325 hypothetical protein; Provisional
Probab=43.95 E-value=22 Score=43.75 Aligned_cols=10 Identities=10% Similarity=0.354 Sum_probs=4.8
Q ss_pred HHHHHHHhhh
Q 000558 391 AFLKCLHIYS 400 (1423)
Q Consensus 391 EFLK~LnLYs 400 (1423)
+.|..+|+|.
T Consensus 338 ~llp~~~~f~ 347 (401)
T PRK05325 338 ELLPVCNYFA 347 (401)
T ss_pred HHHHHhhheE
Confidence 3444555544
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=43.51 E-value=21 Score=43.05 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=9.2
Q ss_pred hhhhhhhccCCccccccCC
Q 000558 132 NLIFGFNTFLPKGYEITLD 150 (1423)
Q Consensus 132 dLI~GFN~FLP~gy~I~l~ 150 (1423)
||+.+...|=|-.|-..+|
T Consensus 47 dl~eal~~fG~i~yvt~~P 65 (494)
T KOG1456|consen 47 DLVEALSNFGPIAYVTCMP 65 (494)
T ss_pred HHHHHHhcCCceEEEEecc
Confidence 4444445555555544443
No 49
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=42.21 E-value=85 Score=37.78 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=38.4
Q ss_pred HHHHH-HHHHHcCCChHHHHHHH----HHHHHhhhcCCcHHHHHHHHHHhhc
Q 000558 166 ITFVN-KIKKRFHNDEHVYKSFL----EILNMYRKEHKDINEVYSEVASLFE 212 (1423)
Q Consensus 166 i~fvn-KVK~RF~~~P~vYk~FL----eIL~~y~~~~~si~eV~~~Va~LF~ 212 (1423)
..+++ +|+.++..||..|++|- ++|..|+.+.++..++++++..|-+
T Consensus 178 ~~~l~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~ 229 (335)
T PF11867_consen 178 EKLLRDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEELIKLAK 229 (335)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34444 79999999999998877 5677799999999999999887643
No 50
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=42.09 E-value=23 Score=46.45 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-hhhhhcccCCccc
Q 000558 644 KQKQEEWTKCRSDFNKVWAEIYAK-NHYKSLDHRSFYF 680 (1423)
Q Consensus 644 KqK~eEWr~aq~e~nkvWrev~~K-ny~KSLDH~~~~F 680 (1423)
.+|+|+-+.-|+.-|.-=.++.-| -.+..||-||+-+
T Consensus 903 ~~tqe~pt~Qqrs~~~seNQqflKev~~qvL~GqgVGw 940 (1588)
T KOG3570|consen 903 TVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGW 940 (1588)
T ss_pred cccCCCCCccccccccchhhHHHHHHHHHHhcccccce
Confidence 345566655555433322222222 2345688888764
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=41.57 E-value=21 Score=42.94 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHhccChHHHHHHhhhhcc
Q 000558 405 KRNDLQNLVTDLLGKYMDLMDEFNHFFER 433 (1423)
Q Consensus 405 dr~ELv~lV~~fLG~~PDLm~~FK~FLg~ 433 (1423)
++++-|.-+.+|| -||=--.||+|-+.
T Consensus 360 SkQ~~v~~~~pfl--LpDgSpSfKdys~S 386 (494)
T KOG1456|consen 360 SKQNFVSPVQPFL--LPDGSPSFKDYSGS 386 (494)
T ss_pred ccccccccCCcee--cCCCCcchhhcccc
Confidence 4444444444444 12333345555543
No 52
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=36.59 E-value=41 Score=38.23 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHc
Q 000558 161 EFEEAITFVNKIKKRF 176 (1423)
Q Consensus 161 ef~~Ai~fvnKVK~RF 176 (1423)
||..=.+||+.-++.|
T Consensus 115 EF~~Lw~~i~~Wr~vF 130 (221)
T KOG0037|consen 115 EFKALWKYINQWRNVF 130 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566666666555
No 53
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=36.30 E-value=83 Score=29.81 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=38.7
Q ss_pred hHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 000558 375 IFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGK 419 (1423)
Q Consensus 375 ~FFdKVKk~L~~~~Y~EFLK~LnLYsQeIIdr~ELv~lV~~fLG~ 419 (1423)
..|..+++.|.++..+.-.+..+-|-+..|+|+|++..+..+.|+
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 467888888886667777777788899999999999999999996
No 54
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=35.77 E-value=44 Score=34.37 Aligned_cols=62 Identities=21% Similarity=0.458 Sum_probs=46.3
Q ss_pred chhhhHHHHHHhhcC---hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHh--ccChHHHHHHhhhhc
Q 000558 371 NQGFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 432 (1423)
Q Consensus 371 ~eEl~FFdKVKk~L~---~~~Y~EFLK~LnLYsQeIIdr~ELv~lV~~fL--G~~PDLm~~FK~FLg 432 (1423)
.+-+..|+++.+.+. .+-|-.|=.+|..|..-+..+=++-+-+..++ |-+++||.+|+.++.
T Consensus 44 ee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~~eti~Al~~Qgl~~~lM~ef~~~i~ 110 (113)
T PF08963_consen 44 EEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDVHETIEALLRQGLFQPLMTEFKKIIK 110 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCHHHHHHHHHHccCcHHHHHHHHHHHh
Confidence 455789999999888 66678999999999988887777777777888 679999999999874
No 55
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=34.07 E-value=82 Score=34.68 Aligned_cols=6 Identities=17% Similarity=0.539 Sum_probs=2.7
Q ss_pred hhhHHH
Q 000558 81 ALTYLK 86 (1423)
Q Consensus 81 Al~YL~ 86 (1423)
+-+|+.
T Consensus 132 vsSyia 137 (169)
T PF12301_consen 132 VSSYIA 137 (169)
T ss_pred HHHHHH
Confidence 334544
No 56
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=30.87 E-value=1.1e+02 Score=35.92 Aligned_cols=14 Identities=21% Similarity=0.014 Sum_probs=8.1
Q ss_pred ChhhhhhhhccCCc
Q 000558 130 HNNLIFGFNTFLPK 143 (1423)
Q Consensus 130 hpdLI~GFN~FLP~ 143 (1423)
.-+-+.-|---||+
T Consensus 78 d~erL~rFlwsLp~ 91 (304)
T KOG0775|consen 78 DIERLGRFLWSLPV 91 (304)
T ss_pred CHHHHHHHHHcCch
Confidence 44445556666776
No 57
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=30.36 E-value=80 Score=37.53 Aligned_cols=8 Identities=50% Similarity=1.178 Sum_probs=5.0
Q ss_pred CCCcccCC
Q 000558 10 GGSQFKRP 17 (1423)
Q Consensus 10 ~~~q~~~~ 17 (1423)
+|+-|+.|
T Consensus 9 GG~SFssp 16 (289)
T PF07466_consen 9 GGGSFSSP 16 (289)
T ss_pred CCCCCCCC
Confidence 46666665
No 58
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=29.29 E-value=55 Score=40.02 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHc
Q 000558 162 FEEAITFVNKIKKRF 176 (1423)
Q Consensus 162 f~~Ai~fvnKVK~RF 176 (1423)
.+--..+.+.+|.|.
T Consensus 159 l~~~RT~r~al~Rri 173 (371)
T TIGR02877 159 LDKKRTVIEALKRNQ 173 (371)
T ss_pred chHHHHHHHHHHHHh
Confidence 344444555555554
No 59
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=27.52 E-value=90 Score=40.88 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=4.4
Q ss_pred hcccchhhHHHH
Q 000558 559 RCEDDRFELDML 570 (1423)
Q Consensus 559 rcEDERfE~D~~ 570 (1423)
|+++-|.-+|-.
T Consensus 407 rv~egrr~v~~m 418 (828)
T PF04094_consen 407 RVDEGRRAVDAM 418 (828)
T ss_pred HHhhccchHHHH
Confidence 333333333333
No 60
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=26.97 E-value=64 Score=36.73 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHHHHHHhccCChhhHHHH
Q 000558 95 QREKYDMFLEVMKDFKAQRTDTAGVIAR 122 (1423)
Q Consensus 95 ~p~~Y~eFL~IMkdfk~~~id~~gVi~r 122 (1423)
.|.++.-|-.+=++ .+++|...++..-
T Consensus 56 ~~~~~~~f~~vD~d-~sg~i~~~eLq~a 82 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD-RSGRILAKELQQA 82 (221)
T ss_pred cHHHHHHHHhhCcc-ccccccHHHHHHH
Confidence 45666655444322 2345555555443
No 61
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=26.07 E-value=70 Score=28.27 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 000558 1228 LDKLLYRLCKQLQTVAADEMDNKLIQLYE 1256 (1423)
Q Consensus 1228 iDKLI~~lvKQlq~ivsDe~~~~ll~L~~ 1256 (1423)
||.|+++| |++||+++|..+++=++|..
T Consensus 2 leell~sL-k~iqh~L~D~qSQ~Dv~lll 29 (49)
T PF09060_consen 2 LEELLSSL-KHIQHCLNDSQSQQDVELLL 29 (49)
T ss_dssp HHHHHHHH-HHHHCCH-SHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhhccHhhHHhHHHHH
Confidence 56777764 99999999988877555443
No 62
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.48 E-value=81 Score=39.93 Aligned_cols=9 Identities=22% Similarity=0.600 Sum_probs=4.7
Q ss_pred HHHHHhhhc
Q 000558 85 LKEVKDMFQ 93 (1423)
Q Consensus 85 L~~VK~~F~ 93 (1423)
++.+|..|+
T Consensus 660 ~~~~r~af~ 668 (731)
T KOG0339|consen 660 ITAMRTAFQ 668 (731)
T ss_pred HHHHHHHHH
Confidence 455555553
No 63
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=25.07 E-value=85 Score=39.44 Aligned_cols=126 Identities=19% Similarity=0.253 Sum_probs=74.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccccccchhH------HHHHHHHhhCCCh--------HHHHHH
Q 000558 562 DDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSAL------NLRCIERLYGDHG--------LDVMDI 627 (1423)
Q Consensus 562 DERfE~D~~IE~~~~tI~~Le~l~~~i~~~~~~~~~~~~l~~~l~~i------~~R~I~riYGd~g--------~evi~~ 627 (1423)
|+..|+|.+|.++..|-+.|..+-+.|..+-++..+ ++...+- |.-..++++|... .|+|++
T Consensus 523 d~~ield~~~~sl~nar~i~n~~~k~~p~lip~~p~----ddd~~~a~~~a~ey~pt~rk~~gn~~kkik~~itae~i~~ 598 (758)
T COG5324 523 DDIIELDPLIGSLENARRIVNYFKKNIPELIPNDPS----DDDYAAALNYAVEYVPTYRKTFGNDSKKIKNKITAEGITG 598 (758)
T ss_pred cceeecccccchhhhHHHHHHHHHhhCccccCCCCC----chHHHHHHhhhhhcCchhhhhhCCchHHhhhheehhhccc
Confidence 678899999999999888888887777666554433 1222222 3334567777432 344444
Q ss_pred HH---hCcCcchhHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHh-------------hhhhcccCCcccccccccccc
Q 000558 628 LR---KNPAIALPVMLTRLKQKQEEWT--KCRSDFNKVWAEIYAKN-------------HYKSLDHRSFYFKQQDSKNLS 689 (1423)
Q Consensus 628 l~---knP~~alPVVL~RLKqK~eEWr--~aq~e~nkvWrev~~Kn-------------y~KSLDH~~~~FKq~DkK~ls 689 (1423)
.. +....-.-|+|. ||.-|-. ..-...|+.|.+...++ -.|+...|...-|..||-+++
T Consensus 599 ~~~c~~~~~~~f~~ll~---~k~~~~sl~~vlt~a~~~wq~~~~ryt~q~s~~~~~i~~sq~~~n~q~~~~k~t~km~fr 675 (758)
T COG5324 599 SSTCFKKAPRYFGVLLD---RKTVESSLVQVLTIANLQWQEAFSRYTLQDSFHITMIHESQKPVNSQHMHDKNTTKMGFR 675 (758)
T ss_pred hHHHHHHhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccccccccccccccee
Confidence 33 333333455665 4554444 34468899999877663 345555566666666665555
Q ss_pred hhHHH
Q 000558 690 TKSLV 694 (1423)
Q Consensus 690 ~K~Lv 694 (1423)
-.+|+
T Consensus 676 i~~l~ 680 (758)
T COG5324 676 ITHLV 680 (758)
T ss_pred EEEEe
Confidence 44443
No 64
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=24.92 E-value=1.7e+02 Score=32.38 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.6
Q ss_pred hhhHHHHHHhhhcCC
Q 000558 81 ALTYLKEVKDMFQDQ 95 (1423)
Q Consensus 81 Al~YL~~VK~~F~d~ 95 (1423)
|++-|-+|-.-|..|
T Consensus 125 ~valvGAvsSyiaYq 139 (169)
T PF12301_consen 125 VVALVGAVSSYIAYQ 139 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555433
No 65
>KOG3293 consensus Small nuclear ribonucleoprotein (snRNP) [RNA processing and modification]
Probab=24.91 E-value=70 Score=33.19 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000558 41 GGGGAGGGGGAGAGGGSGVGGGGGGMTAG 69 (1423)
Q Consensus 41 ~~~~~~~~~~~g~g~~~~~gggg~g~ggG 69 (1423)
|.|-|+|.|.++|.+.||+-||.-|.+..
T Consensus 97 ~~grG~gng~~~~~~rg~~~g~~~g~~n~ 125 (134)
T KOG3293|consen 97 GRGRGRGNGNRGGNRRGGGRGGSMGQNNS 125 (134)
T ss_pred cCCcCCCCCCCCCCcCCCCCCCCcCCCCC
No 66
>PRK09807 hypothetical protein; Provisional
Probab=24.00 E-value=64 Score=32.87 Aligned_cols=49 Identities=39% Similarity=0.447 Sum_probs=39.6
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHh------c------cCChhhHHHHHHHHhccChhhhhh
Q 000558 88 VKDMFQDQREKYDMFLEVMKDFKA------Q------RTDTAGVIARVKDLFKGHNNLIFG 136 (1423)
Q Consensus 88 VK~~F~d~p~~Y~eFL~IMkdfk~------~------~id~~gVi~rV~~Lf~ghpdLI~G 136 (1423)
|-.-|..+|-.-..||.+=.||-+ | .+|++-.|--|..||.|.|.||.-
T Consensus 2 vaalfgcqpylvqrflavdndfaailkgngqhaavdfavdiavaipvvqtlfngqpqlisq 62 (161)
T PRK09807 2 VAALFGCQPYLVQRFLAVDNDFAAILKGNGQHAAVDFAVDIAVAIPVVQTLFNGQPQLISQ 62 (161)
T ss_pred chhhhcCcHHHHHHHHHhcchHHHHHcCCCceeeeeeeeeeeeehHHHHHHhCCChHHHHH
Confidence 345688899999999999888864 1 256677799999999999999976
No 67
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=23.37 E-value=72 Score=37.38 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=7.7
Q ss_pred HHHHHhhhcC--ChHHHHHHH
Q 000558 85 LKEVKDMFQD--QREKYDMFL 103 (1423)
Q Consensus 85 L~~VK~~F~d--~p~~Y~eFL 103 (1423)
+..|=+.++. +-+..-.||
T Consensus 66 vacvCe~L~q~Gd~erL~rFl 86 (304)
T KOG0775|consen 66 VACVCESLQQGGDIERLGRFL 86 (304)
T ss_pred HHHHHHHHHhccCHHHHHHHH
Confidence 3334444432 344444444
No 68
>PF09579 Spore_YtfJ: Sporulation protein YtfJ (Spore_YtfJ); InterPro: IPR014229 Proteins in this entry, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF [].
Probab=22.81 E-value=34 Score=33.30 Aligned_cols=7 Identities=14% Similarity=0.486 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 000558 98 KYDMFLE 104 (1423)
Q Consensus 98 ~Y~eFL~ 104 (1423)
.|+..|+
T Consensus 69 ~~~kli~ 75 (83)
T PF09579_consen 69 PLDKLID 75 (83)
T ss_pred hHHHHHH
Confidence 4444443
No 69
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=22.32 E-value=2.5e+02 Score=27.28 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=48.3
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--hHHHHHHhhhhcc
Q 000558 374 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKY--MDLMDEFNHFFER 433 (1423)
Q Consensus 374 l~FFdKVKk~L~~~~Y~EFLK~LnLYsQeIIdr~ELv~lV~~fLG~~--PDLm~~FK~FLg~ 433 (1423)
-.|.++|..-|...--+.|..+|+.|.++- +..+||.-+..+|... -.|+.+-..+|+.
T Consensus 6 r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~-~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~ 66 (78)
T cd07347 6 REFSQQVDHLLTDAEREQVTRALERYHQER-NVDDLVRDLYLVLDTPAKLPLLQFLRQVIPP 66 (78)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCcHhHHHHHHHHHHHcCH
Confidence 468999999999333678999999999999 9999999999999642 2678877777764
No 70
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=22.15 E-value=1.7e+02 Score=29.97 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=42.2
Q ss_pred hhhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCh
Q 000558 373 GFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYM 421 (1423)
Q Consensus 373 El~FFdKVKk~L~~~~Y~EFLK~LnLYsQeIIdr~ELv~lV~~fLG~~P 421 (1423)
-.+.|.-.|+.+..+-=++|+++|..|.++.|+...++.+...++.+++
T Consensus 55 l~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ry~ 103 (117)
T PF08349_consen 55 LQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARRYP 103 (117)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHCC
Confidence 3456777788888666788999999999999999999999999998875
No 71
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=21.57 E-value=5.3e+02 Score=33.61 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=12.0
Q ss_pred cccCeeeecccCCCCcccc
Q 000558 528 VLNDHWVSVTSGSEDYSFK 546 (1423)
Q Consensus 528 VLND~WVS~t~~SED~~F~ 546 (1423)
-|||.+-|.-|-|--..|+
T Consensus 623 rlndsysclgwfspgqvfv 641 (1218)
T KOG3543|consen 623 RLNDSYSCLGWFSPGQVFV 641 (1218)
T ss_pred hcCCcchhccccCCCceee
Confidence 4677777777766555554
No 72
>KOG3590 consensus Protein kinase A anchoring protein [Signal transduction mechanisms]
Probab=21.30 E-value=1.6e+02 Score=36.31 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=6.3
Q ss_pred cCChHHHHHHHHH
Q 000558 93 QDQREKYDMFLEV 105 (1423)
Q Consensus 93 ~d~p~~Y~eFL~I 105 (1423)
-.+|-+..=|++-
T Consensus 119 l~D~~~LSYFiQY 131 (602)
T KOG3590|consen 119 LHDTIVLSYFIQY 131 (602)
T ss_pred hccchHHHHHHHH
Confidence 3455555445443
No 73
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.09 E-value=1.8e+02 Score=26.83 Aligned_cols=56 Identities=13% Similarity=0.238 Sum_probs=47.3
Q ss_pred HHHHHHhhcC---hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000558 376 FCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 431 (1423)
Q Consensus 376 FFdKVKk~L~---~~~Y~EFLK~LnLYsQeIIdr~ELv~lV~~fLG~~PDLm~~FK~FL 431 (1423)
|.+++...++ -..|..|.+-|.-|+.=+.+|..|+..+..+-..|.+|-.=.+.+|
T Consensus 2 yW~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 2 YWERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5566666666 6789999999999999999999999999998888988888777654
No 74
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.08 E-value=2.2e+02 Score=37.92 Aligned_cols=6 Identities=17% Similarity=1.171 Sum_probs=2.5
Q ss_pred HHHHHh
Q 000558 377 CDKVKE 382 (1423)
Q Consensus 377 FdKVKk 382 (1423)
|+-||+
T Consensus 808 CEE~rk 813 (1102)
T KOG1924|consen 808 CEELRK 813 (1102)
T ss_pred HHHHHh
Confidence 444444
Done!