Query         000558
Match_columns 1423
No_of_seqs    349 out of 653
Neff          5.3 
Searched_HMMs 29240
Date          Tue Mar 26 20:10:17 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/000558.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_328-332//hhsearch_pdb/000558hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2czy_A Paired amphipathic heli   1.0       1       1  184.4   8.2   76   75-150     1-76  (77)
  2 2cr7_A Paired amphipathic heli   1.0       1       1  179.5   8.3   76   71-146     3-78  (80)
  3 2f05_A Paired amphipathic heli   1.0       1       1  172.8   6.0   80   73-152     2-91  (105)
  4 2ld7_B Paired amphipathic heli   1.0       1       1  169.7   7.8   69  368-436     6-75  (75)
  5 1e91_A Paired amphipathic heli   1.0       1       1  166.9   6.5   74   73-146     2-85  (85)
  6 1g1e_B SIN3A; four-helix bundl   1.0       1       1  154.8   5.9   71  157-227     5-88  (89)
  7 2f05_A Paired amphipathic heli   1.0       1       1  153.5   8.3   77  157-233     2-88  (105)
  8 1g1e_B SIN3A; four-helix bundl   1.0       1       1  152.4   8.4   74   71-144     3-89  (89)
  9 1e91_A Paired amphipathic heli   1.0       1       1  152.4   9.8   74  157-230     2-85  (85)
 10 2cr7_A Paired amphipathic heli   1.0       1       1  145.0   7.8   74  157-230     5-78  (80)

No 1  
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=1.00  E-value=1  Score=184.42  Aligned_cols=76  Identities=51%  Similarity=0.857  Sum_probs=74.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             6542045647898776304885889999999999883169936599999998404902563310058743222479
Q 000558           75 KLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLD  150 (1423)
Q Consensus        75 ~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~gVi~rV~~LF~ghpdLI~GFN~FLP~gy~I~l~  150 (1423)
                      +++++||++||++||.+|+++|++|.+||+||++|+++++|+++|++||+.||+||||||.|||+|||+||+|+||
T Consensus         1 ~l~~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~~~i~~~   76 (77)
T 2czy_A            1 PVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP   76 (77)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHHHTTSCSSSCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCC
T ss_conf             9878999999999999985685999999999999987699899999999999768879999999888997640598


No 2  
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=1.00  E-value=1  Score=179.53  Aligned_cols=76  Identities=50%  Similarity=0.797  Sum_probs=73.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
Q ss_conf             8877654204564789877630488588999999999988316993659999999840490256331005874322
Q 000558           71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYE  146 (1423)
Q Consensus        71 g~~~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~gVi~rV~~LF~ghpdLI~GFN~FLP~gy~  146 (1423)
                      ...++++++||++||++||.+|+++|++|.+||+||++|+++++++++||+||++||+||||||.|||+|||+||+
T Consensus         3 s~~~~~~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~   78 (80)
T 2cr7_A            3 SGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS   78 (80)
T ss_dssp             CCCCCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             8889988999999999999998258599999999999998669989999999999986788999999988869878


No 3  
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=1.00  E-value=1  Score=172.76  Aligned_cols=80  Identities=28%  Similarity=0.593  Sum_probs=70.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf             776542045647898776304885889999999999883169936----------5999999984049025633100587
Q 000558           73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTA----------GVIARVKDLFKGHNNLIFGFNTFLP  142 (1423)
Q Consensus        73 ~~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~----------gVi~rV~~LF~ghpdLI~GFN~FLP  142 (1423)
                      .++++++||++||++||.||+++|++|.+||+||++|+.+++|++          +|+++|+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP   81 (105)
T 2f05_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (105)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99876899999999999998139499999999999998645665443223576999999999997669899999998787


Q ss_pred             CCCCCCCCCC
Q ss_conf             4322247988
Q 000558          143 KGYEITLDED  152 (1423)
Q Consensus       143 ~gy~I~l~~d  152 (1423)
                      ++|+|.++.+
T Consensus        82 ~~~~~~~~~~   91 (105)
T 2f05_A           82 EAKRSLFTGN   91 (105)
T ss_dssp             GGGC------
T ss_pred             CCCCCCCCCC
T ss_conf             7235688996


No 4  
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=1.00  E-value=1  Score=169.70  Aligned_cols=69  Identities=33%  Similarity=0.641  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             553003448999985229-588999999998652177788899999999730385789999653035665
Q 000558          368 GIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCEN  436 (1423)
Q Consensus       368 ~~~~eEl~FFdKVKk~L~-~~~Y~EFLK~LnLYsQeIIsr~ELv~lV~~lLG~~PDLm~~FKeFLg~~e~  436 (1423)
                      .++.+|++||+|||++|+ +++|++||||||||+|+||+++||+++|.+|||+|||||+||+.||+|||+
T Consensus         6 ~~~~de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~Fk~Fl~~~e~   75 (75)
T 2ld7_B            6 HGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKES   75 (75)
T ss_dssp             TTSSHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHHHHHHTCCCC
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             0638899999999998289778999999999860068679999999999984488999999998287888


No 5  
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=1.00  E-value=1  Score=166.88  Aligned_cols=74  Identities=31%  Similarity=0.673  Sum_probs=61.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH----------HHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf             7765420456478987763048858899999999998831699365----------999999984049025633100587
Q 000558           73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAG----------VIARVKDLFKGHNNLIFGFNTFLP  142 (1423)
Q Consensus        73 ~~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~id~~g----------Vi~rV~~LF~ghpdLI~GFN~FLP  142 (1423)
                      .++++++||++||++||.+|+++|++|.+||+||++|+++++|++|          |+++|+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP   81 (85)
T 1e91_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99764999999999999998049699999999999998735565542213575999999999998669999999997786


Q ss_pred             CCCC
Q ss_conf             4322
Q 000558          143 KGYE  146 (1423)
Q Consensus       143 ~gy~  146 (1423)
                      ++|+
T Consensus        82 ~~~~   85 (85)
T 1e91_A           82 EAKR   85 (85)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             8669


No 6  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=1.00  E-value=1  Score=154.75  Aligned_cols=71  Identities=54%  Similarity=0.979  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH-------------HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             87502689989999999770789588999999998765227748-------------88999999942039369999812
Q 000558          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDI-------------NEVYSEVASLFEDHADLLEEFTR  223 (1423)
Q Consensus       157 ~~~vef~~Ai~FvnKIK~RF~~~P~vYk~FLeIL~~y~~~~~si-------------~eV~~~V~~LF~~hpDLL~eF~~  223 (1423)
                      .++++|++|++||||||+||+++|++|++||+||++|+++++++             .+||++|+.||+||||||.||+.
T Consensus         5 ~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~~   84 (89)
T 1g1e_B            5 NQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQ   84 (89)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             89987899999999999998559399999999999998656751000011223553999999999998549999999998


Q ss_pred             HCCC
Q ss_conf             0899
Q 000558          224 FLPD  227 (1423)
Q Consensus       224 FLP~  227 (1423)
                      |||+
T Consensus        85 FLP~   88 (89)
T 1g1e_B           85 FLPD   88 (89)
T ss_dssp             TCCC
T ss_pred             HCCC
T ss_conf             7869


No 7  
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=1.00  E-value=1  Score=153.50  Aligned_cols=77  Identities=48%  Similarity=0.853  Sum_probs=71.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             875026899899999997707895889999999987652277----------4888999999942039369999812089
Q 000558          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHK----------DINEVYSEVASLFEDHADLLEEFTRFLP  226 (1423)
Q Consensus       157 ~~~vef~~Ai~FvnKIK~RF~~~P~vYk~FLeIL~~y~~~~~----------si~eV~~~V~~LF~~hpDLL~eF~~FLP  226 (1423)
                      .++++|++|++|||+||+||+++|++|++||+||++|+++++          ++.+||++|+.||+||||||.+|+.|||
T Consensus         2 ~~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP   81 (105)
T 2f05_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (105)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99876899999999999998139499999999999998645665443223576999999999997669899999998787


Q ss_pred             CCCCCCC
Q ss_conf             9977876
Q 000558          227 DTSATSL  233 (1423)
Q Consensus       227 ~~~~~~~  233 (1423)
                      +......
T Consensus        82 ~~~~~~~   88 (105)
T 2f05_A           82 EAKRSLF   88 (105)
T ss_dssp             GGGC---
T ss_pred             CCCCCCC
T ss_conf             7235688


No 8  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=1.00  E-value=1  Score=152.38  Aligned_cols=74  Identities=30%  Similarity=0.603  Sum_probs=68.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             8877654204564789877630488588999999999988316-------------993659999999840490256331
Q 000558           71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQR-------------TDTAGVIARVKDLFKGHNNLIFGF  137 (1423)
Q Consensus        71 g~~~~~~~~dAl~YL~~VK~~F~d~p~~Y~~FLeImkdfk~~~-------------id~~gVi~rV~~LF~ghpdLI~GF  137 (1423)
                      ...+++++++|++||++||.||+++|++|.+||+||++|+.++             |++.+|+++|+.||+||||||.||
T Consensus         3 ~~~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F   82 (89)
T 1g1e_B            3 QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEF   82 (89)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             77899878999999999999985593999999999999986567510000112235539999999999985499999999


Q ss_pred             HCCCCCC
Q ss_conf             0058743
Q 000558          138 NTFLPKG  144 (1423)
Q Consensus       138 N~FLP~g  144 (1423)
                      |.|||++
T Consensus        83 ~~FLP~~   89 (89)
T 1g1e_B           83 GQFLPDA   89 (89)
T ss_dssp             HTTCCCC
T ss_pred             HHHCCCC
T ss_conf             9878698


No 9  
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=1.00  E-value=1  Score=152.38  Aligned_cols=74  Identities=50%  Similarity=0.884  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             87502689989999999770789588999999998765227----------74888999999942039369999812089
Q 000558          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEH----------KDINEVYSEVASLFEDHADLLEEFTRFLP  226 (1423)
Q Consensus       157 ~~~vef~~Ai~FvnKIK~RF~~~P~vYk~FLeIL~~y~~~~----------~si~eV~~~V~~LF~~hpDLL~eF~~FLP  226 (1423)
                      .++++|++|++|||+||+||+++|++|++||+||++|++++          +++.+||++|+.||+||||||.||+.|||
T Consensus         2 ~~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP   81 (85)
T 1e91_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99764999999999999998049699999999999998735565542213575999999999998669999999997786


Q ss_pred             CCCC
Q ss_conf             9977
Q 000558          227 DTSA  230 (1423)
Q Consensus       227 ~~~~  230 (1423)
                      ..+.
T Consensus        82 ~~~~   85 (85)
T 1e91_A           82 EAKR   85 (85)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             8669


No 10 
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=1.00  E-value=1  Score=145.05  Aligned_cols=74  Identities=34%  Similarity=0.669  Sum_probs=70.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf             87502689989999999770789588999999998765227748889999999420393699998120899977
Q 000558          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSA  230 (1423)
Q Consensus       157 ~~~vef~~Ai~FvnKIK~RF~~~P~vYk~FLeIL~~y~~~~~si~eV~~~V~~LF~~hpDLL~eF~~FLP~~~~  230 (1423)
                      .+++++++|++||++||.||+++|++|++||+||++|+.+.+++.+||++|+.||+||||||.+|+.|||....
T Consensus         5 ~~~~~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~   78 (80)
T 2cr7_A            5 SSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS   78 (80)
T ss_dssp             CCCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             89988999999999999998258599999999999998669989999999999986788999999988869878


Done!