BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000559
(1422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 104/237 (43%), Gaps = 42/237 (17%)
Query: 262 LIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLELLSDND 321
L++LDDVW W VLK A +I++TTRD++V ++ P +E
Sbjct: 239 LLILDDVWDS----W-VLK----AFDSQCQILLTTRDKSVTDSVMGPKYVVPVES----- 284
Query: 322 CWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLR---------C 372
S+ K+ + + + ++++CKG PL +G LLR
Sbjct: 285 --SLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYL 342
Query: 373 KQ-RDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAIFPKDYEFEEKE 431
KQ ++ +++ I S+ +D + + +S L +K + +I KD + K
Sbjct: 343 KQLQNKQFKRIRKSSSYDYE---ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKV 399
Query: 432 VVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRS-IFQQVNGDVSKFVMHDLINDL 487
+ +LW E +++ED+ ++ +++S +F NG ++ +HDL D
Sbjct: 400 LCILWDMET--------EEVEDI----LQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 104/237 (43%), Gaps = 42/237 (17%)
Query: 262 LIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLELLSDND 321
L++LDDVW W VLK A +I++TTRD++V ++ P +E
Sbjct: 245 LLILDDVWDS----W-VLK----AFDSQCQILLTTRDKSVTDSVMGPKYVVPVES----- 290
Query: 322 CWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLR---------C 372
S+ K+ + + + ++++CKG PL +G LLR
Sbjct: 291 --SLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYL 348
Query: 373 KQ-RDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAIFPKDYEFEEKE 431
KQ ++ +++ I S+ +D + + +S L +K + +I KD + K
Sbjct: 349 KQLQNKQFKRIRKSSSYDYE---ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKV 405
Query: 432 VVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRS-IFQQVNGDVSKFVMHDLINDL 487
+ +LW E +++ED+ ++ +++S +F NG ++ +HDL D
Sbjct: 406 LCILWDMET--------EEVEDI----LQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 560 LSEVLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSG-TRICHIPESVGFLSHLQI 618
L ++ + L+ L +RN ++ + +I L L L+ G T + + P G + L+
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 619 LLLKDCHRLKKLPTNVENLIDLLYFDISG-------QNLITEMPV 656
L+LKDC L LP ++ L L D+ G +LI ++P
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 1100 LRRLKIQTCPKLKSLSSSEGQLPVAIKHLEVQNCAELTTLSSTG--KLPEALQYLSIADC 1157
LR L I+ CP+L L + +H + N L L TG LP SIA+
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR-LEWTGIRSLPA-----SIANL 205
Query: 1158 PQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLP 1217
L+S+ I N L ++ A+H L L+++ + C +L ++P
Sbjct: 206 QNLKSLK-------------IRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 1218 NQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSL 1266
L+ + + C L LP + RL L++LD+ C+ S LP+ + L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 82/212 (38%), Gaps = 51/212 (24%)
Query: 1184 LQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRCEELRPLPSGVERLN 1243
L P+ +L L I + L PD L + ++R LR LP+ + LN
Sbjct: 93 LPQFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLN 150
Query: 1244 SLQELDISLCIPASGLP---------------TNLTSLSIE------------------D 1270
L+EL I C + LP NL SL +E
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 1271 LKM---PLSCWG--LHKLTSLRKLEIRGCPGALSFPEV-SVRMRLPTTLTE--------- 1315
LK+ PLS G +H L L +L++RGC ++P + R L + +
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 1316 LNIARFPMLHCLSSRGFQNLTSLEYLSISECP 1347
L+I R L L RG NL+ L L I++ P
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLP 301
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 34/216 (15%)
Query: 751 NLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCLPA-LGALPSLKELTIKGLR 809
+L+ +I+ G + P F+ + L L LPA + +L L+EL+I+
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQ--FAGLETLTLAR-NPLRALPASIASLNRLRELSIRACP 161
Query: 810 ELITIGSEIYGDDCLKPFQSLETLCFQNLGVWSHWDPIGE-DGQVEKFPVLRKLSILNCP 868
EL + + D Q L L Q+L + W I + L+ L I N P
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNL--QSLRL--EWTGIRSLPASIANLQNLKSLKIRNSP 217
Query: 869 RLSERLP--DHLPSLEELEVRGCEKL---VVSLSGLPLLCKLELSSCKRMVCRSIDSQSI 923
LS P HLP LEEL++RGC L G L +L L C ++ +D
Sbjct: 218 -LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--- 273
Query: 924 KHATLSNVSEFSRLSRHNFQKVECLKIIGCEELEHL 959
H ++E L + GC L L
Sbjct: 274 ----------------HRLTQLEKLDLRGCVNLSRL 293
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 34/162 (20%)
Query: 941 NFQKVECLKIIGCEELEHLWNEICLEELPHGLHSV-ASLRKLFVANCQSL------VSFL 993
+ ++ L I C EL ELP L S AS + N QSL + L
Sbjct: 148 SLNRLRELSIRACPELT---------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 994 EACF--LSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIARRQLP----- 1046
A L NL L I+N S L +L H+ L+ L + GC +L R P
Sbjct: 199 PASIANLQNLKSLKIRN-SPLSALGPAI-HHLPKLEELDLRGCTAL-----RNYPPIFGG 251
Query: 1047 -SSLTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSL 1087
+ L ++ +++C NL LT +I+ L+ LE LD+ GC +L
Sbjct: 252 RAPLKRLILKDCSNL-LTLPLDIHR--LTQLEKLDLRGCVNL 290
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 572 VLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLP 631
L LR+ + + P+ L+HL++ + +P++ + L+ L L + L+ LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALP 143
Query: 632 TNVENLIDLLYFDISGQNLITEMP 655
++ +L L I +TE+P
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R + T +S + P++ + +
Sbjct: 157 VHRDLAARNILVNSNL-VCKVSDFGLSRFLEDDTSDPTYTSALGGKI-PIRWTAPEAIQY 214
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLE 315
RKF DVWS +WEV+ + P+ I +D + + CP H L
Sbjct: 215 RKFTSA-SDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLM 273
Query: 316 LLSDNDCWSVFKKH 329
L DCW + H
Sbjct: 274 L----DCWQKDRNH 283
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 216 VCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGL 275
VC DF + R + T +S + P++ + + RKF DVWS +
Sbjct: 147 VCKVSDFGLSRFLEDDTSDPTYTSALGGKI-PIRWTAPEAIQYRKFTSA-SDVWSYGIVM 204
Query: 276 WEVL---KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLELLSDNDCWSVFKKH 329
WEV+ + P+ I +D + + CP H L L DCW + H
Sbjct: 205 WEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLML----DCWQKDRNH 257
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 62/247 (25%)
Query: 262 LIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCP----------GEC 311
L++LDDVW W VLK A +I++TTRD++V ++ P G
Sbjct: 239 LLILDDVWDP----W-VLK----AFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 312 HNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLR 371
LE+LS + KK + ++++CKG PL +G LLR
Sbjct: 290 KGLEILS---LFVNMKKEDLPAEA--------------HSIIKECKGSPLVVSLIGALLR 332
Query: 372 C----------KQRDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAIF 421
+ ++ +++ I S+ +D + + +S L +K + +I
Sbjct: 333 DFPNRWAYYLRQLQNKQFKRIRKSSSYDYE---ALDEAMSISVEMLREDIKDYYTDLSIL 389
Query: 422 PKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRS-IFQQVNGDVSKFVM 480
KD + K + +LW E +++ED+ ++ +++S +F NG + +
Sbjct: 390 QKDVKVPTKVLCVLWDLET--------EEVEDI----LQEFVNKSLLFCNRNGKSFCYYL 437
Query: 481 HDLINDL 487
HDL D
Sbjct: 438 HDLQVDF 444
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E++ ++ PV+ + +
Sbjct: 167 VHRDLAARNILVNSNL-VCKVSDFGLSRVIEDDPEAVYTTT---GGKIPVRWTAPEAIQY 222
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLE 315
RKF DVWS +WEV+ + P+ + I + + CP H L
Sbjct: 223 RKFTSA-SDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLM 281
Query: 316 LLSDNDCW 323
L DCW
Sbjct: 282 L----DCW 285
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 247 PVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL 303
P++ + +A R F DVWS +WEVL + P+ ++ ++++ +E L
Sbjct: 217 PIRWTAPEAIAFRTFSSA-SDVWSFGVVMWEVLAYGERPYWNMT--NRDVISSVEEGYRL 273
Query: 304 --TLGCPGECHNLELLSDNDCW 323
+GCP H L L DCW
Sbjct: 274 PAPMGCPHALHQLML----DCW 291
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 247 PVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL 303
P++ + +A R F DVWS +WEVL + P+ ++ ++++ +E L
Sbjct: 217 PIRWTAPEAIAFRTFSSA-SDVWSFGVVMWEVLAYGERPYWNMT--NRDVISSVEEGYRL 273
Query: 304 --TLGCPGECHNLELLSDNDCW 323
+GCP H L L DCW
Sbjct: 274 PAPMGCPHALHQLML----DCW 291
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLARVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 62/247 (25%)
Query: 262 LIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCP----------GEC 311
L++LDDVW W VLK A +I++TT D++V ++ P G
Sbjct: 246 LLILDDVWDP----W-VLK----AFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGRE 296
Query: 312 HNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLR 371
LE+LS + KK + ++++CKG PL +G LLR
Sbjct: 297 KGLEILS---LFVNMKKEDLPAEA--------------HSIIKECKGSPLVVSLIGALLR 339
Query: 372 C----------KQRDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAIF 421
+ ++ +++ I S+ +D + + +S L +K + +I
Sbjct: 340 DFPNRWAYYLRQLQNKQFKRIRKSSSYDYE---ALDEAMSISVEMLREDIKDYYTDLSIL 396
Query: 422 PKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRS-IFQQVNGDVSKFVM 480
KD + K + +LW E +++ED+ ++ +++S +F NG + +
Sbjct: 397 QKDVKVPTKVLCVLWDLET--------EEVEDI----LQEFVNKSLLFCNRNGKSFCYYL 444
Query: 481 HDLINDL 487
HDL D
Sbjct: 445 HDLQVDF 451
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution
Length = 636
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 1154 IADC----PQLESIAESFHDNAALVFILIGN-CRKLQSVPNALHKLVSLDQMYIGNCPSL 1208
I DC PQ +SI +S L IG + V A+ +L L Q Y GN P +
Sbjct: 162 IKDCINSDPQQKSIKKSSR--ITLKDTQIGQLSNNITFVSKAVXRLTKLRQFYXGNSPFV 219
Query: 1209 VSFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSL 1266
E N+N + + E+L+ + L L ++++ C + LPT L +L
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLK-----WDNLKDLTDVEVYNCPNLTKLPTFLKAL 272
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 18/131 (13%)
Query: 200 LVYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVA 257
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 168 FVHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIA 223
Query: 258 GRKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECH 312
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 224 YRKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALY 280
Query: 313 NLELLSDNDCW 323
L L DCW
Sbjct: 281 QLML----DCW 287
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 167 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 222
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 223 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 279
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 280 LML----DCW 285
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLGRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 169 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTRGG---KIPIRWTSPEAIAY 224
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 225 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 281
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 282 LML----DCW 287
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 157 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTR---GGKIPIRWTSPEAIAY 212
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 213 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 269
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 270 LML----DCW 275
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 138 VHRDLAARNILVNSNL-VCKVSDFGMSRVLEDDPEAAYTTR---GGKIPIRWTAPEAIAY 193
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLE 315
RKF DVWS +WEV+ + P+ + I + + CP H L
Sbjct: 194 RKFTSA-SDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMDCPIALHQLM 252
Query: 316 LLSDNDCW 323
L DCW
Sbjct: 253 L----DCW 256
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 140 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTR---GGKIPIRWTSPEAIAY 195
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 196 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 252
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 253 LML----DCW 258
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 153 VHRDLAARNILVNSNL-VCKVSDFGMSRVLEDDPEAAYTTR---GGKIPIRWTAPEAIAY 208
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLE 315
RKF DVWS +WEV+ + P+ + I + + CP H L
Sbjct: 209 RKFTSA-SDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMDCPIALHQLM 267
Query: 316 LLSDNDCW 323
L DCW
Sbjct: 268 L----DCW 271
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 132 VHRDLAARNILVNSNL-VCKVSDFGMSRVLEDDPEAAYTTR---GGKIPIRWTAPEAIAY 187
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLE 315
RKF DVWS +WEV+ + P+ + I + + CP H L
Sbjct: 188 RKFTSA-SDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPPPMDCPIALHQLM 246
Query: 316 LLSDNDCW 323
L DCW
Sbjct: 247 L----DCW 250
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 140 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTR---GGKIPIRWTSPEAIAY 195
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVAL--TLGCPGECHN 313
RKF DVWS LWEV+ + P+ + ++ ++ DE L + CP +
Sbjct: 196 RKFTSA-SDVWSYGIVLWEVMSYGERPYWEMS--NQDVIKAVDEGYRLPPPMDCPAALYQ 252
Query: 314 LELLSDNDCW 323
L L DCW
Sbjct: 253 LML----DCW 258
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 201 VYNDLAVEDF--NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG 258
V+ DLA + NS VC DF + R+ + E+ + P++ + +A
Sbjct: 146 VHRDLAARNILINSNL-VCKVSDFGLSRVLEDDPEAAYTTR---GGKIPIRWTAPEAIAF 201
Query: 259 RKFLIVLDDVWSKNYGLWEVL---KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLE 315
RKF DVWS +WEV+ + P+ I + + CP + L
Sbjct: 202 RKFTSA-SDVWSYGIVMWEVVSYGERPYWEMTNQDVIKAVEEGYRLPSPMDCPAALYQLM 260
Query: 316 LLSDNDCW 323
L DCW
Sbjct: 261 L----DCW 264
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 104/269 (38%), Gaps = 50/269 (18%)
Query: 881 LEELEVRGCEKLVVSLSGLPLLCKLELSSCKRMVCRSIDSQSIKHATLSNVSEFS----R 936
+ L G + L+V GL + S +D + I A + E S
Sbjct: 204 FQSLNFGGTQNLLVIFKGLK---NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 937 LSRHNFQKV-----ECLKIIGCEELEHLWNEICLEELPHGLHSVASLRKLFVANCQSLVS 991
L +H F + C G +EL+ L ELP GL +++L+KL
Sbjct: 261 LQKHYFFNISSNTFHCFS--GLQELD--LTATHLSELPSGLVGLSTLKKL---------- 306
Query: 992 FLEACFLSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIARRQLPSSLTK 1051
L A NL ++ N +L L+ L L + +E ++L R+L S
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL-----RELDLSHDD 361
Query: 1052 VEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQTCPKL 1111
+E +C NLQL +LS L+SL++S + L L+ + CP+L
Sbjct: 362 IETSDCCNLQL--------RNLSHLQSLNLSYNEPL-----------SLKTEAFKECPQL 402
Query: 1112 KSLSSSEGQLPVAIKHLEVQNCAELTTLS 1140
+ L + +L V QN L L+
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 561 SEVLSKFKKLRVLSLRNYYITEVPNSI-RLLTHLRYLNFSGTRICHIPESVGFLSHLQIL 619
S+ + KLR+L L + + +P I + L +L L + ++ +P +G L L
Sbjct: 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNL 111
Query: 620 --LLKDCHRLKKLPTNV-ENLIDLLYFDISGQNLITEMPVG----MNKLKCLLTLSNFVV 672
L D ++LK LP V ++L L Y + G N + +P G + LK L +N +
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 673 GLNTGS--GLEDLKSLKFLRGKLCISKLRNVVQDITEPILSDKEDLEVLQLE 722
+ G+ L +LK+LK N ++ + E E L++LQL+
Sbjct: 171 RVPEGAFDKLTELKTLKL---------DNNQLKRVPEGAFDSLEKLKMLQLQ 213
>pdb|4F40|A Chain A, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4F40|B Chain B, X-Ray Crystal Structure Of Apo Prostaglandin F Synthase
From Leishmania Major Friedlin
pdb|4G5D|A Chain A, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
pdb|4G5D|B Chain B, X-Ray Crystal Structure Of Prostaglandin F Synthase From
Leishmania Major Friedlin Bound To Nadph
Length = 288
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 544 WP----IILHEGTRYITNFVLSEVLSKFKKLRVLSLRNYYITEVPNSIRLLT 591
WP I+ EG +Y+ ++ E L K KK+R + + N++I + + + + T
Sbjct: 117 WPRGKDILSKEGKKYLDSWRAFEQLYKEKKVRAIGVSNFHIHHLEDVLAMCT 168
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 18/154 (11%)
Query: 41 EKNLVMIQAVLEDAEEKQLSNRAVKIWLDDLRAL-----------AYDVEDILDEQQLTT 89
E+ + +A+ D EE + S+R K D + + +E DE T
Sbjct: 282 EEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKT 341
Query: 90 RPSLSILQNLPSNLVSQINLGSKIKEVTSRLEELCDRRNVLQLENTSSGTGRAASVSTV- 148
++ LV +N+ + K+VT LE++ +RN S G ++ +
Sbjct: 342 VIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANID 401
Query: 149 -----SWQRLHTTCLATEPAVYGRDGDKAKVLDM 177
+ +R T TEP + RDG + M
Sbjct: 402 DTQYLAAKRAIRTVFGTEPDMI-RDGSTIPIAKM 434
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 563 VLSKFKKLRVLSLRNYYITEVPNSI-RLLTHLRYLNFSGTRICHIPESVGFLSHLQILLL 621
V +L VL L +T +P+++ L HL+ L ++ +P + L+HL L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142
Query: 622 KDCHRLKKLP 631
D ++LK +P
Sbjct: 143 -DQNQLKSIP 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,615,465
Number of Sequences: 62578
Number of extensions: 1667758
Number of successful extensions: 3906
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3878
Number of HSP's gapped (non-prelim): 65
length of query: 1422
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1311
effective length of database: 8,027,179
effective search space: 10523631669
effective search space used: 10523631669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)