Query 000559
Match_columns 1422
No_of_seqs 727 out of 5834
Neff 10.2
Searched_HMMs 46136
Date Mon Apr 1 19:16:16 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-82 8.2E-87 780.4 41.7 800 27-889 20-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.4E-60 9.5E-65 624.0 43.6 523 110-671 133-690 (1153)
3 PLN00113 leucine-rich repeat r 100.0 9E-39 2E-43 425.9 23.0 204 1148-1373 405-608 (968)
4 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-39 4.6E-44 367.6 12.1 273 167-445 1-285 (287)
5 PLN00113 leucine-rich repeat r 100.0 2.1E-37 4.6E-42 412.8 22.3 499 561-1261 86-589 (968)
6 KOG4194 Membrane glycoprotein 99.9 6.8E-28 1.5E-32 263.5 -0.7 363 972-1384 98-464 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 1.1E-28 2.5E-33 258.0 -8.2 481 569-1232 46-541 (565)
8 KOG4194 Membrane glycoprotein 99.9 2.9E-25 6.2E-30 243.2 5.0 302 972-1345 145-448 (873)
9 KOG0618 Serine/threonine phosp 99.9 1E-26 2.2E-31 269.3 -7.7 176 1072-1253 308-486 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 1.6E-26 3.5E-31 242.0 -8.3 448 586-1253 40-491 (565)
11 KOG0618 Serine/threonine phosp 99.9 2.3E-24 4.9E-29 250.0 0.5 104 567-672 44-147 (1081)
12 PLN03210 Resistant to P. syrin 99.9 6.4E-22 1.4E-26 262.4 23.0 323 968-1353 580-910 (1153)
13 KOG0444 Cytoskeletal regulator 99.9 5.5E-24 1.2E-28 234.1 -3.0 177 566-809 5-184 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 1.7E-22 3.7E-27 222.5 -5.8 228 559-808 23-255 (1255)
15 KOG4237 Extracellular matrix p 99.6 1.2E-16 2.6E-21 168.7 -2.9 107 569-676 68-178 (498)
16 PRK15387 E3 ubiquitin-protein 99.5 1E-13 2.2E-18 169.2 14.9 155 1147-1347 302-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 1.6E-13 3.4E-18 167.7 13.4 90 568-670 201-290 (788)
18 KOG4237 Extracellular matrix p 99.5 3.4E-15 7.3E-20 157.9 -2.5 358 966-1353 80-480 (498)
19 KOG0617 Ras suppressor protein 99.4 4.4E-15 9.5E-20 138.0 -5.5 100 568-668 33-133 (264)
20 KOG0617 Ras suppressor protein 99.4 8.8E-15 1.9E-19 136.0 -4.5 129 560-689 48-178 (264)
21 PRK15370 E3 ubiquitin-protein 99.3 4.3E-12 9.3E-17 156.7 12.1 83 568-658 178-260 (754)
22 PRK15370 E3 ubiquitin-protein 99.3 3.5E-12 7.6E-17 157.5 9.9 58 977-1041 179-236 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.2 4.6E-12 1E-16 158.8 3.7 107 566-673 543-653 (889)
24 PRK04841 transcriptional regul 99.0 8.3E-09 1.8E-13 137.9 23.2 264 191-492 42-332 (903)
25 cd00116 LRR_RI Leucine-rich re 98.9 2.1E-10 4.5E-15 133.0 -2.4 35 998-1034 22-61 (319)
26 PRK00411 cdc6 cell division co 98.8 2.7E-07 5.9E-12 109.8 23.5 294 160-470 28-357 (394)
27 cd00116 LRR_RI Leucine-rich re 98.8 2.4E-10 5.1E-15 132.5 -3.4 86 564-649 19-119 (319)
28 TIGR02928 orc1/cdc6 family rep 98.6 3.5E-06 7.7E-11 99.2 24.2 293 162-471 15-350 (365)
29 TIGR03015 pepcterm_ATPase puta 98.6 2.4E-06 5.2E-11 95.8 21.6 173 191-370 53-242 (269)
30 PF14580 LRR_9: Leucine-rich r 98.6 2.6E-08 5.7E-13 99.6 3.1 105 567-675 18-126 (175)
31 PF14580 LRR_9: Leucine-rich r 98.5 5.1E-08 1.1E-12 97.6 3.9 106 566-674 40-152 (175)
32 KOG4341 F-box protein containi 98.5 7.2E-09 1.6E-13 111.8 -3.0 276 945-1253 140-436 (483)
33 KOG4341 F-box protein containi 98.5 5.5E-09 1.2E-13 112.7 -4.0 90 776-872 139-231 (483)
34 COG4886 Leucine-rich repeat (L 98.5 8.8E-08 1.9E-12 114.2 5.2 108 564-673 112-220 (394)
35 PF01637 Arch_ATPase: Archaeal 98.5 2.9E-07 6.3E-12 101.2 8.8 193 164-365 1-233 (234)
36 COG2909 MalT ATP-dependent tra 98.5 2.9E-06 6.3E-11 101.1 17.0 288 171-494 24-340 (894)
37 KOG0532 Leucine-rich repeat (L 98.5 1.2E-08 2.7E-13 114.1 -3.2 100 571-673 78-177 (722)
38 KOG0532 Leucine-rich repeat (L 98.4 4.8E-08 1E-12 109.5 0.0 189 1150-1369 78-270 (722)
39 PRK15386 type III secretion pr 98.4 8.5E-07 1.8E-11 99.6 9.7 162 1194-1373 51-214 (426)
40 PF13855 LRR_8: Leucine rich r 98.4 3.2E-07 6.9E-12 75.1 4.2 57 568-624 1-59 (61)
41 PLN03150 hypothetical protein; 98.4 2.9E-07 6.2E-12 114.4 5.6 100 569-668 419-521 (623)
42 KOG3207 Beta-tubulin folding c 98.4 6.6E-08 1.4E-12 105.2 -0.4 150 1193-1345 170-335 (505)
43 PRK00080 ruvB Holliday junctio 98.3 1.6E-05 3.5E-10 91.1 18.0 269 162-472 25-311 (328)
44 PF13855 LRR_8: Leucine rich r 98.3 5.5E-07 1.2E-11 73.7 4.0 59 591-649 1-60 (61)
45 COG4886 Leucine-rich repeat (L 98.3 3.2E-07 7E-12 109.3 3.5 198 571-815 96-294 (394)
46 TIGR00635 ruvB Holliday juncti 98.3 1.5E-05 3.2E-10 91.1 16.8 268 162-471 4-289 (305)
47 KOG2120 SCF ubiquitin ligase, 98.3 3.6E-08 7.8E-13 101.3 -4.4 60 1310-1369 312-373 (419)
48 PRK15386 type III secretion pr 98.2 3.8E-06 8.2E-11 94.5 9.9 73 972-1055 48-120 (426)
49 KOG1259 Nischarin, modulator o 98.2 1.5E-07 3.2E-12 96.7 -1.1 107 565-675 281-387 (490)
50 PLN03150 hypothetical protein; 98.2 1.1E-06 2.4E-11 109.2 6.0 107 1177-1299 424-530 (623)
51 PF05729 NACHT: NACHT domain 98.2 4.8E-06 1E-10 85.7 9.7 133 191-330 10-163 (166)
52 KOG1259 Nischarin, modulator o 98.2 4.8E-07 1E-11 93.1 0.6 112 560-675 299-412 (490)
53 KOG3207 Beta-tubulin folding c 98.2 2.3E-07 4.9E-12 101.1 -2.0 61 749-811 120-185 (505)
54 PTZ00112 origin recognition co 98.2 0.00023 5E-09 86.0 22.6 291 162-470 755-1085(1164)
55 PF12799 LRR_4: Leucine Rich r 98.0 4.4E-06 9.5E-11 62.0 3.6 40 568-607 1-40 (44)
56 COG3903 Predicted ATPase [Gene 98.0 1.1E-05 2.4E-10 88.9 8.0 281 191-493 24-315 (414)
57 KOG0531 Protein phosphatase 1, 98.0 1.8E-06 3.9E-11 102.7 0.3 109 564-676 91-200 (414)
58 KOG1909 Ran GTPase-activating 97.9 4.8E-07 1E-11 96.0 -4.4 199 561-809 23-252 (382)
59 COG2256 MGS1 ATPase related to 97.8 0.00015 3.2E-09 79.6 11.9 194 191-409 58-265 (436)
60 PRK06893 DNA replication initi 97.8 7.1E-05 1.5E-09 80.6 9.4 143 191-367 49-204 (229)
61 KOG0531 Protein phosphatase 1, 97.8 4.4E-06 9.6E-11 99.4 -0.0 108 565-676 69-176 (414)
62 PF12799 LRR_4: Leucine Rich r 97.8 2E-05 4.3E-10 58.5 3.2 40 591-631 1-40 (44)
63 COG3899 Predicted ATPase [Gene 97.8 0.00046 1E-08 88.3 17.1 306 163-491 1-385 (849)
64 KOG1909 Ran GTPase-activating 97.7 2.7E-06 5.8E-11 90.5 -2.8 115 558-674 48-197 (382)
65 PRK13342 recombination factor 97.7 0.00024 5.1E-09 84.2 12.6 175 163-367 13-197 (413)
66 PF13173 AAA_14: AAA domain 97.7 7.8E-05 1.7E-09 72.1 6.9 111 191-322 12-127 (128)
67 PRK07003 DNA polymerase III su 97.7 0.00092 2E-08 80.8 16.3 177 162-366 16-221 (830)
68 PRK05564 DNA polymerase III su 97.6 0.00066 1.4E-08 77.4 14.6 176 162-365 4-189 (313)
69 PRK14961 DNA polymerase III su 97.6 0.0007 1.5E-08 78.6 14.6 178 162-363 16-217 (363)
70 PF13401 AAA_22: AAA domain; P 97.6 9.8E-05 2.1E-09 72.2 6.3 106 191-298 14-125 (131)
71 PRK06645 DNA polymerase III su 97.6 0.00059 1.3E-08 81.2 13.7 191 162-363 21-226 (507)
72 cd01128 rho_factor Transcripti 97.6 5.1E-05 1.1E-09 81.6 4.0 79 191-269 26-113 (249)
73 TIGR02903 spore_lon_C ATP-depe 97.5 0.00094 2E-08 82.5 14.8 199 162-369 154-398 (615)
74 KOG4579 Leucine-rich repeat (L 97.5 7.3E-06 1.6E-10 74.8 -2.8 90 564-655 49-139 (177)
75 PRK04195 replication factor C 97.5 0.0056 1.2E-07 74.2 20.8 242 162-444 14-271 (482)
76 KOG4579 Leucine-rich repeat (L 97.5 2.2E-05 4.8E-10 71.7 0.1 103 568-672 27-133 (177)
77 PRK14960 DNA polymerase III su 97.5 0.001 2.2E-08 79.6 13.7 189 162-363 15-216 (702)
78 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00061 1.3E-08 74.0 11.1 166 167-368 22-203 (226)
79 PRK12323 DNA polymerase III su 97.5 0.00075 1.6E-08 80.4 12.2 196 162-365 16-224 (700)
80 PRK09376 rho transcription ter 97.5 9.9E-05 2.1E-09 82.3 4.3 79 191-269 179-266 (416)
81 PRK14963 DNA polymerase III su 97.5 0.00011 2.3E-09 87.9 4.9 184 162-363 14-214 (504)
82 PRK12402 replication factor C 97.4 0.0014 2.9E-08 76.5 13.8 194 162-364 15-224 (337)
83 KOG2982 Uncharacterized conser 97.4 9.7E-05 2.1E-09 76.8 3.5 203 1148-1353 46-266 (418)
84 KOG2120 SCF ubiquitin ligase, 97.4 1.8E-05 3.9E-10 82.0 -1.9 140 972-1111 206-351 (419)
85 PRK14949 DNA polymerase III su 97.4 0.0016 3.4E-08 80.6 14.1 180 162-366 16-221 (944)
86 COG1474 CDC6 Cdc6-related prot 97.4 0.0053 1.2E-07 70.3 17.5 168 164-331 19-204 (366)
87 PRK14957 DNA polymerase III su 97.4 0.002 4.3E-08 77.2 14.1 181 162-367 16-222 (546)
88 PRK14962 DNA polymerase III su 97.3 0.0032 7E-08 74.8 15.1 185 162-370 14-223 (472)
89 PF13191 AAA_16: AAA ATPase do 97.3 0.00028 6E-09 74.0 5.5 72 163-235 1-82 (185)
90 COG5238 RNA1 Ran GTPase-activa 97.3 5.6E-05 1.2E-09 77.4 0.2 90 564-654 26-135 (388)
91 cd00009 AAA The AAA+ (ATPases 97.3 0.00086 1.9E-08 67.3 8.7 121 165-300 1-131 (151)
92 PRK07471 DNA polymerase III su 97.3 0.00093 2E-08 76.6 9.3 193 161-366 18-238 (365)
93 PLN03025 replication factor C 97.2 0.0017 3.7E-08 74.1 11.2 179 162-361 13-195 (319)
94 PRK14951 DNA polymerase III su 97.2 0.0026 5.7E-08 77.3 13.2 191 162-363 16-222 (618)
95 PRK14964 DNA polymerase III su 97.2 0.0028 6.2E-08 74.8 13.1 178 162-363 13-214 (491)
96 PRK14956 DNA polymerase III su 97.2 0.0011 2.4E-08 77.0 9.4 192 162-362 18-218 (484)
97 PRK05896 DNA polymerase III su 97.2 0.0029 6.2E-08 75.9 12.9 193 162-367 16-222 (605)
98 PRK08691 DNA polymerase III su 97.2 0.0034 7.3E-08 76.1 13.2 174 162-363 16-217 (709)
99 KOG1859 Leucine-rich repeat pr 97.2 3E-05 6.6E-10 90.0 -3.8 111 560-674 179-291 (1096)
100 TIGR00678 holB DNA polymerase 97.1 0.0052 1.1E-07 64.3 12.9 92 258-362 95-187 (188)
101 PRK09112 DNA polymerase III su 97.1 0.0067 1.4E-07 69.3 14.3 193 161-366 22-240 (351)
102 PRK00440 rfc replication facto 97.1 0.0048 1E-07 71.2 13.5 177 162-363 17-200 (319)
103 PRK14955 DNA polymerase III su 97.1 0.0019 4.1E-08 76.0 9.8 194 162-363 16-225 (397)
104 PRK07940 DNA polymerase III su 97.1 0.0058 1.3E-07 70.8 13.6 185 162-366 5-213 (394)
105 PRK13341 recombination factor 97.1 0.0021 4.6E-08 80.1 10.3 173 162-360 28-211 (725)
106 KOG3665 ZYG-1-like serine/thre 97.1 0.0004 8.6E-09 86.1 3.9 112 535-653 145-265 (699)
107 PF05621 TniB: Bacterial TniB 97.1 0.015 3.3E-07 63.0 15.2 201 161-364 33-259 (302)
108 KOG1859 Leucine-rich repeat pr 97.0 3.6E-05 7.8E-10 89.4 -4.9 106 568-678 164-270 (1096)
109 PRK14959 DNA polymerase III su 97.0 0.008 1.7E-07 72.6 14.4 194 162-370 16-225 (624)
110 PRK14958 DNA polymerase III su 97.0 0.0042 9.2E-08 74.7 12.3 178 162-363 16-217 (509)
111 PRK07994 DNA polymerase III su 97.0 0.005 1.1E-07 75.1 12.8 190 162-365 16-219 (647)
112 PTZ00202 tuzin; Provisional 97.0 0.0038 8.2E-08 70.1 10.6 160 159-328 259-432 (550)
113 TIGR02397 dnaX_nterm DNA polym 97.0 0.01 2.2E-07 69.7 15.1 181 162-366 14-218 (355)
114 PRK09111 DNA polymerase III su 97.0 0.0066 1.4E-07 74.1 13.6 193 161-365 23-232 (598)
115 PRK08903 DnaA regulatory inact 97.0 0.0059 1.3E-07 66.2 12.0 168 165-370 22-203 (227)
116 PF14516 AAA_35: AAA-like doma 97.0 0.049 1.1E-06 62.3 19.9 198 161-373 10-246 (331)
117 PRK14954 DNA polymerase III su 97.0 0.0054 1.2E-07 75.0 12.6 193 162-361 16-223 (620)
118 PRK07764 DNA polymerase III su 96.9 0.0089 1.9E-07 75.7 14.2 187 162-363 15-218 (824)
119 PRK08727 hypothetical protein; 96.9 0.011 2.4E-07 63.9 13.2 139 191-363 51-201 (233)
120 PRK14969 DNA polymerase III su 96.9 0.012 2.6E-07 71.5 14.5 181 162-366 16-221 (527)
121 COG2255 RuvB Holliday junction 96.9 0.016 3.5E-07 60.9 13.2 180 162-361 26-218 (332)
122 KOG2028 ATPase related to the 96.9 0.011 2.4E-07 63.7 12.1 119 191-330 172-294 (554)
123 PRK14087 dnaA chromosomal repl 96.9 0.016 3.4E-07 69.0 14.9 157 191-367 151-320 (450)
124 PF05496 RuvB_N: Holliday junc 96.8 0.0088 1.9E-07 61.6 10.5 67 290-363 151-218 (233)
125 PRK09087 hypothetical protein; 96.8 0.012 2.6E-07 63.0 12.1 94 262-365 90-194 (226)
126 KOG2982 Uncharacterized conser 96.8 0.00036 7.8E-09 72.7 0.4 200 1143-1344 67-287 (418)
127 PRK08084 DNA replication initi 96.8 0.016 3.4E-07 62.8 13.0 142 191-366 55-209 (235)
128 KOG2227 Pre-initiation complex 96.8 0.023 4.9E-07 64.1 14.1 172 160-331 148-339 (529)
129 TIGR00767 rho transcription te 96.7 0.0035 7.5E-08 70.8 7.7 79 191-269 178-265 (415)
130 PRK07133 DNA polymerase III su 96.7 0.018 3.8E-07 70.9 14.2 190 162-366 18-220 (725)
131 PRK14950 DNA polymerase III su 96.7 0.0071 1.5E-07 74.9 10.9 192 162-366 16-221 (585)
132 PRK14952 DNA polymerase III su 96.7 0.016 3.5E-07 70.4 13.5 194 162-369 13-223 (584)
133 TIGR01242 26Sp45 26S proteasom 96.6 0.016 3.4E-07 67.7 12.4 174 160-361 120-329 (364)
134 PF00308 Bac_DnaA: Bacterial d 96.5 0.021 4.5E-07 60.9 11.7 178 163-364 10-206 (219)
135 PRK14971 DNA polymerase III su 96.5 0.019 4.1E-07 70.8 12.9 177 162-363 17-219 (614)
136 PHA02544 44 clamp loader, smal 96.5 0.012 2.5E-07 67.7 10.6 146 162-328 21-171 (316)
137 PRK14953 DNA polymerase III su 96.5 0.04 8.8E-07 66.0 15.1 178 162-364 16-218 (486)
138 KOG2543 Origin recognition com 96.5 0.011 2.3E-07 64.8 8.7 160 161-329 5-192 (438)
139 KOG3665 ZYG-1-like serine/thre 96.4 0.0012 2.7E-08 81.8 1.8 111 560-672 140-260 (699)
140 PRK08451 DNA polymerase III su 96.4 0.035 7.5E-07 66.5 13.7 176 162-365 14-217 (535)
141 PRK14970 DNA polymerase III su 96.4 0.034 7.3E-07 65.3 13.7 176 162-361 17-204 (367)
142 PRK06305 DNA polymerase III su 96.4 0.036 7.9E-07 66.0 13.6 179 162-366 17-223 (451)
143 PRK05642 DNA replication initi 96.3 0.028 6.1E-07 60.7 11.4 144 191-368 55-210 (234)
144 KOG1947 Leucine rich repeat pr 96.3 0.0006 1.3E-08 84.3 -1.7 15 1073-1087 294-308 (482)
145 PRK14948 DNA polymerase III su 96.3 0.023 5E-07 70.1 11.4 193 162-365 16-221 (620)
146 PF00560 LRR_1: Leucine Rich R 96.2 0.0023 4.9E-08 39.4 1.3 21 592-612 1-21 (22)
147 TIGR00362 DnaA chromosomal rep 96.2 0.094 2E-06 62.4 15.9 148 191-362 146-306 (405)
148 PRK11331 5-methylcytosine-spec 96.1 0.021 4.5E-07 65.9 9.2 106 162-272 175-285 (459)
149 TIGR02880 cbbX_cfxQ probable R 96.1 0.071 1.5E-06 59.4 13.2 124 191-330 68-208 (284)
150 TIGR02639 ClpA ATP-dependent C 96.1 0.033 7.1E-07 71.3 11.8 154 162-330 182-358 (731)
151 PRK06647 DNA polymerase III su 96.0 0.089 1.9E-06 64.2 14.7 188 162-363 16-217 (563)
152 PRK14965 DNA polymerase III su 96.0 0.038 8.3E-07 68.1 11.7 190 162-366 16-221 (576)
153 CHL00181 cbbX CbbX; Provisiona 96.0 0.12 2.5E-06 57.7 14.3 125 191-331 69-210 (287)
154 TIGR03345 VI_ClpV1 type VI sec 96.0 0.042 9.2E-07 70.8 12.3 153 162-330 187-363 (852)
155 PRK14086 dnaA chromosomal repl 95.9 0.13 2.9E-06 62.1 15.3 145 191-359 324-481 (617)
156 CHL00095 clpC Clp protease ATP 95.9 0.049 1.1E-06 70.6 12.4 154 162-329 179-353 (821)
157 COG1373 Predicted ATPase (AAA+ 95.9 0.048 1E-06 63.8 11.2 64 259-325 94-162 (398)
158 PRK14088 dnaA chromosomal repl 95.9 0.11 2.4E-06 61.9 14.3 147 191-360 140-299 (440)
159 PRK00149 dnaA chromosomal repl 95.8 0.14 3.1E-06 61.7 15.2 148 191-362 158-318 (450)
160 PRK05707 DNA polymerase III su 95.8 0.088 1.9E-06 59.7 12.4 97 259-366 106-203 (328)
161 KOG1644 U2-associated snRNP A' 95.8 0.0093 2E-07 59.3 3.9 102 569-673 43-151 (233)
162 PRK07399 DNA polymerase III su 95.8 0.14 3E-06 57.8 13.8 194 162-366 4-221 (314)
163 PRK03992 proteasome-activating 95.8 0.035 7.5E-07 65.1 9.4 151 161-331 130-316 (389)
164 KOG2123 Uncharacterized conser 95.7 0.00093 2E-08 69.1 -3.5 104 566-672 17-127 (388)
165 KOG1947 Leucine rich repeat pr 95.7 0.0013 2.9E-08 81.3 -3.2 61 1099-1160 352-414 (482)
166 KOG2739 Leucine-rich acidic nu 95.7 0.0066 1.4E-07 63.3 2.4 35 1219-1253 65-101 (260)
167 KOG1644 U2-associated snRNP A' 95.6 0.0085 1.8E-07 59.5 3.1 101 570-674 21-125 (233)
168 KOG2739 Leucine-rich acidic nu 95.6 0.0055 1.2E-07 63.8 1.8 36 589-624 63-101 (260)
169 PRK05563 DNA polymerase III su 95.6 0.14 3E-06 62.9 14.2 187 162-363 16-217 (559)
170 PRK11034 clpA ATP-dependent Cl 95.2 0.11 2.3E-06 65.7 11.4 155 162-330 186-362 (758)
171 PF00560 LRR_1: Leucine Rich R 95.2 0.0097 2.1E-07 36.6 1.1 22 569-590 1-22 (22)
172 TIGR02881 spore_V_K stage V sp 95.2 0.14 3.1E-06 56.6 11.2 72 260-331 106-192 (261)
173 COG0593 DnaA ATPase involved i 95.1 1.5 3.3E-05 50.4 19.1 123 191-331 123-258 (408)
174 PRK12608 transcription termina 95.0 0.079 1.7E-06 59.8 8.5 99 170-268 119-229 (380)
175 PF05659 RPW8: Arabidopsis bro 95.0 0.16 3.4E-06 49.5 9.4 114 2-125 1-115 (147)
176 PRK04132 replication factor C 95.0 0.3 6.4E-06 61.9 14.3 152 191-364 576-729 (846)
177 PRK06620 hypothetical protein; 94.9 0.15 3.2E-06 54.1 10.1 94 260-363 86-186 (214)
178 PRK12422 chromosomal replicati 94.8 0.18 3.9E-06 59.9 11.1 123 191-331 151-285 (445)
179 PRK08769 DNA polymerase III su 94.6 0.44 9.5E-06 53.6 13.2 96 258-366 112-208 (319)
180 KOG0989 Replication factor C, 94.6 0.1 2.2E-06 55.8 7.5 181 161-359 35-223 (346)
181 TIGR03346 chaperone_ClpB ATP-d 94.6 0.2 4.3E-06 65.3 12.1 154 162-330 173-349 (852)
182 PRK08058 DNA polymerase III su 94.6 0.33 7.1E-06 55.6 12.5 71 258-328 109-180 (329)
183 COG3267 ExeA Type II secretory 94.6 0.82 1.8E-05 48.0 13.8 169 191-368 61-247 (269)
184 COG0542 clpA ATP-binding subun 94.6 0.044 9.6E-07 67.4 5.6 117 161-286 490-620 (786)
185 PRK08116 hypothetical protein; 94.4 0.085 1.8E-06 58.1 6.8 95 191-299 124-221 (268)
186 PF00004 AAA: ATPase family as 94.4 0.045 9.8E-07 53.3 4.3 16 191-206 8-23 (132)
187 TIGR02639 ClpA ATP-dependent C 94.4 0.19 4.2E-06 64.4 11.0 114 162-285 454-579 (731)
188 PRK06871 DNA polymerase III su 94.2 0.1 2.2E-06 58.7 7.1 94 258-363 106-200 (325)
189 PF05673 DUF815: Protein of un 94.2 0.32 6.9E-06 51.2 10.0 119 159-301 24-153 (249)
190 PRK10865 protein disaggregatio 94.0 0.39 8.5E-06 62.4 12.6 44 162-205 178-223 (857)
191 KOG0473 Leucine-rich repeat pr 93.9 0.0034 7.3E-08 63.3 -4.8 85 564-649 38-122 (326)
192 PF04665 Pox_A32: Poxvirus A32 93.8 0.058 1.3E-06 57.2 4.0 31 188-219 19-50 (241)
193 TIGR03689 pup_AAA proteasome A 93.8 0.29 6.2E-06 58.5 10.0 159 162-330 182-378 (512)
194 smart00382 AAA ATPases associa 93.7 0.22 4.7E-06 49.2 7.9 78 191-271 12-90 (148)
195 TIGR00763 lon ATP-dependent pr 93.7 1.4 3E-05 57.1 16.7 46 161-206 319-372 (775)
196 PRK10787 DNA-binding ATP-depen 93.6 0.71 1.5E-05 59.0 13.7 159 161-330 321-506 (784)
197 KOG2123 Uncharacterized conser 93.5 0.012 2.7E-07 61.1 -1.6 81 563-644 36-123 (388)
198 PF13306 LRR_5: Leucine rich r 93.5 0.23 5E-06 48.1 7.3 59 1190-1251 7-66 (129)
199 TIGR00602 rad24 checkpoint pro 93.5 0.25 5.4E-06 60.7 9.0 45 161-205 83-134 (637)
200 PTZ00454 26S protease regulato 93.4 0.39 8.5E-06 56.0 10.1 151 161-330 144-329 (398)
201 PTZ00361 26 proteosome regulat 93.3 0.48 1.1E-05 55.7 10.7 151 162-331 183-368 (438)
202 TIGR03345 VI_ClpV1 type VI sec 93.2 0.17 3.6E-06 65.4 7.3 129 161-298 565-718 (852)
203 CHL00176 ftsH cell division pr 93.0 0.54 1.2E-05 58.4 11.0 172 162-360 183-388 (638)
204 PRK10865 protein disaggregatio 93.0 0.42 9.1E-06 62.1 10.6 131 161-298 567-720 (857)
205 PRK08118 topology modulation p 92.9 0.04 8.7E-07 55.9 1.0 25 191-215 11-37 (167)
206 PF13504 LRR_7: Leucine rich r 92.9 0.064 1.4E-06 30.4 1.4 15 592-606 2-16 (17)
207 cd01133 F1-ATPase_beta F1 ATP 92.9 0.15 3.3E-06 55.2 5.3 78 191-268 79-172 (274)
208 PRK08939 primosomal protein Dn 92.7 0.23 5E-06 55.7 6.7 91 191-298 166-260 (306)
209 PF07693 KAP_NTPase: KAP famil 92.6 1.3 2.8E-05 51.2 13.1 68 168-235 2-80 (325)
210 PF13177 DNA_pol3_delta2: DNA 92.6 0.43 9.3E-06 48.1 7.9 60 258-317 101-161 (162)
211 TIGR01241 FtsH_fam ATP-depende 92.4 1.4 3E-05 54.0 13.5 173 161-360 54-260 (495)
212 TIGR03346 chaperone_ClpB ATP-d 92.4 0.34 7.4E-06 63.2 8.8 130 162-298 565-717 (852)
213 TIGR02640 gas_vesic_GvpN gas v 92.3 1.6 3.4E-05 48.2 12.6 54 169-227 9-63 (262)
214 PRK10536 hypothetical protein; 92.3 0.42 9.1E-06 51.1 7.5 130 162-299 55-213 (262)
215 PF13504 LRR_7: Leucine rich r 92.2 0.096 2.1E-06 29.7 1.5 17 568-584 1-17 (17)
216 PRK07952 DNA replication prote 92.1 0.35 7.6E-06 52.1 6.9 93 191-298 109-204 (244)
217 PRK07993 DNA polymerase III su 92.0 2.4 5.2E-05 48.4 13.8 95 258-364 107-202 (334)
218 KOG0741 AAA+-type ATPase [Post 92.0 2.1 4.6E-05 49.4 12.8 119 191-329 548-685 (744)
219 PRK06090 DNA polymerase III su 91.8 2.5 5.4E-05 47.6 13.3 94 258-366 107-201 (319)
220 cd00561 CobA_CobO_BtuR ATP:cor 91.7 0.24 5.3E-06 48.9 4.7 49 252-300 87-139 (159)
221 KOG0473 Leucine-rich repeat pr 91.4 0.012 2.6E-07 59.5 -4.7 91 580-672 30-121 (326)
222 CHL00095 clpC Clp protease ATP 91.4 0.49 1.1E-05 61.6 8.4 130 162-298 509-661 (821)
223 COG2812 DnaX DNA polymerase II 91.3 0.68 1.5E-05 55.0 8.7 185 162-360 16-214 (515)
224 PF13306 LRR_5: Leucine rich r 91.3 0.3 6.4E-06 47.3 5.0 80 564-647 8-90 (129)
225 PF01695 IstB_IS21: IstB-like 91.1 0.11 2.3E-06 53.3 1.7 91 191-299 57-150 (178)
226 PRK06921 hypothetical protein; 90.8 0.41 8.8E-06 52.7 5.9 28 191-218 127-154 (266)
227 KOG3864 Uncharacterized conser 90.6 0.041 8.9E-07 55.0 -1.8 71 1280-1351 121-191 (221)
228 PRK07261 topology modulation p 90.6 0.5 1.1E-05 48.2 6.0 28 188-215 6-36 (171)
229 PF08423 Rad51: Rad51; InterP 90.5 0.44 9.5E-06 52.2 5.8 45 191-236 48-97 (256)
230 PRK06526 transposase; Provisio 90.4 0.31 6.7E-06 53.1 4.4 91 191-299 108-201 (254)
231 COG5238 RNA1 Ran GTPase-activa 90.2 0.021 4.6E-07 59.2 -4.3 182 1147-1346 30-252 (388)
232 COG1222 RPT1 ATP-dependent 26S 90.2 4.3 9.4E-05 45.0 12.6 183 162-372 151-373 (406)
233 COG0470 HolB ATPase involved i 90.1 1.1 2.4E-05 51.7 9.2 138 163-316 2-167 (325)
234 PF02562 PhoH: PhoH-like prote 89.7 0.3 6.4E-06 50.7 3.4 126 166-299 4-156 (205)
235 KOG0735 AAA+-type ATPase [Post 89.7 0.82 1.8E-05 54.7 7.2 61 191-269 441-504 (952)
236 PRK12377 putative replication 89.5 0.57 1.2E-05 50.7 5.6 92 191-298 111-205 (248)
237 PRK09183 transposase/IS protei 89.4 0.52 1.1E-05 51.7 5.3 92 191-299 112-206 (259)
238 cd01123 Rad51_DMC1_radA Rad51_ 89.4 0.97 2.1E-05 49.2 7.5 44 191-235 29-77 (235)
239 PRK11034 clpA ATP-dependent Cl 89.4 0.72 1.6E-05 58.5 7.2 112 162-284 458-582 (758)
240 PRK06964 DNA polymerase III su 89.4 3.9 8.4E-05 46.6 12.3 94 258-366 131-225 (342)
241 PRK08181 transposase; Validate 89.3 0.46 1E-05 52.0 4.8 92 191-299 116-209 (269)
242 KOG3864 Uncharacterized conser 89.2 0.24 5.1E-06 49.8 2.2 64 972-1035 121-187 (221)
243 PF00158 Sigma54_activat: Sigm 89.2 0.74 1.6E-05 46.6 5.8 42 164-205 1-46 (168)
244 KOG1514 Origin recognition com 89.1 5.5 0.00012 48.2 13.5 126 164-296 398-546 (767)
245 cd01393 recA_like RecA is a b 89.1 1.4 3.1E-05 47.5 8.5 78 191-269 29-124 (226)
246 COG0542 clpA ATP-binding subun 89.0 3.3 7.2E-05 51.7 12.1 153 162-329 170-345 (786)
247 PF14532 Sigma54_activ_2: Sigm 88.9 0.19 4.1E-06 49.3 1.3 102 165-298 1-109 (138)
248 KOG2228 Origin recognition com 88.8 3.2 6.9E-05 45.5 10.3 166 162-330 24-219 (408)
249 PF12061 DUF3542: Protein of u 88.8 0.65 1.4E-05 49.5 5.1 55 32-86 318-373 (402)
250 PRK09361 radB DNA repair and r 88.2 0.99 2.1E-05 48.7 6.5 34 191-226 33-66 (225)
251 PRK04296 thymidine kinase; Pro 88.2 0.39 8.5E-06 50.0 3.2 104 191-300 12-117 (190)
252 PLN03187 meiotic recombination 87.9 1.4 2.9E-05 50.2 7.4 46 191-237 136-186 (344)
253 COG2607 Predicted ATPase (AAA+ 87.7 1.4 3.1E-05 45.6 6.6 112 161-298 59-182 (287)
254 TIGR02238 recomb_DMC1 meiotic 87.5 1.2 2.6E-05 50.2 6.8 46 191-237 106-156 (313)
255 PF00448 SRP54: SRP54-type pro 87.5 0.58 1.3E-05 48.8 3.9 80 188-268 7-92 (196)
256 TIGR02237 recomb_radB DNA repa 87.5 1 2.2E-05 47.9 6.0 37 191-229 22-58 (209)
257 smart00370 LRR Leucine-rich re 87.4 0.34 7.3E-06 31.2 1.4 20 590-609 1-20 (26)
258 smart00369 LRR_TYP Leucine-ric 87.4 0.34 7.3E-06 31.2 1.4 20 590-609 1-20 (26)
259 PRK08699 DNA polymerase III su 87.3 3.3 7.1E-05 47.1 10.1 70 259-328 113-183 (325)
260 PRK07132 DNA polymerase III su 87.2 6.1 0.00013 44.1 11.9 95 258-365 89-184 (299)
261 PF07728 AAA_5: AAA domain (dy 86.7 0.25 5.5E-06 48.5 0.7 81 191-283 9-89 (139)
262 PF00006 ATP-synt_ab: ATP synt 86.6 1.2 2.7E-05 46.9 5.7 75 191-268 25-114 (215)
263 cd01394 radB RadB. The archaea 86.4 1.6 3.4E-05 46.9 6.7 32 191-223 29-60 (218)
264 COG1875 NYN ribonuclease and A 86.3 1.4 3E-05 48.7 5.9 126 165-297 227-386 (436)
265 KOG0733 Nuclear AAA ATPase (VC 86.2 1.4 3.1E-05 51.8 6.3 91 162-271 190-294 (802)
266 TIGR01243 CDC48 AAA family ATP 86.2 5.5 0.00012 51.5 12.6 173 161-360 452-657 (733)
267 cd01135 V_A-ATPase_B V/A-type 86.2 1.5 3.2E-05 47.7 6.1 78 191-268 79-175 (276)
268 TIGR02239 recomb_RAD51 DNA rep 85.9 1.8 3.9E-05 49.0 7.1 45 191-236 106-155 (316)
269 PRK11608 pspF phage shock prot 85.8 1.8 3.8E-05 49.6 7.0 130 163-299 7-151 (326)
270 KOG1051 Chaperone HSP104 and r 85.7 2.2 4.8E-05 54.0 8.1 114 162-285 562-686 (898)
271 PRK15429 formate hydrogenlyase 85.2 2.2 4.7E-05 54.7 8.2 131 162-299 376-521 (686)
272 PRK13695 putative NTPase; Prov 85.0 0.41 9E-06 49.2 1.3 26 191-216 10-35 (174)
273 cd03221 ABCF_EF-3 ABCF_EF-3 E 84.9 4.5 9.8E-05 39.8 8.6 96 191-304 36-132 (144)
274 TIGR01243 CDC48 AAA family ATP 84.9 5.5 0.00012 51.5 11.6 174 162-362 178-383 (733)
275 CHL00195 ycf46 Ycf46; Provisio 84.8 4.3 9.4E-05 48.8 9.8 123 191-332 269-407 (489)
276 cd00983 recA RecA is a bacter 84.7 2.5 5.5E-05 47.4 7.3 73 191-269 65-143 (325)
277 TIGR02012 tigrfam_recA protein 84.5 2.2 4.8E-05 47.9 6.8 73 191-269 65-143 (321)
278 COG1484 DnaC DNA replication p 84.2 1.9 4.1E-05 47.1 6.0 71 191-277 115-185 (254)
279 PRK04301 radA DNA repair and r 84.1 3.2 7E-05 47.3 8.2 45 191-236 112-161 (317)
280 TIGR00708 cobA cob(I)alamin ad 84.1 2.7 5.8E-05 42.3 6.5 50 251-300 88-141 (173)
281 PRK09354 recA recombinase A; P 84.0 2.7 5.9E-05 47.6 7.3 73 191-269 70-148 (349)
282 TIGR01040 V-ATPase_V1_B V-type 84.0 2.2 4.8E-05 49.8 6.6 83 186-268 142-256 (466)
283 TIGR02902 spore_lonB ATP-depen 83.9 2.3 5E-05 52.2 7.2 40 163-204 66-109 (531)
284 PTZ00185 ATPase alpha subunit; 83.6 3.8 8.3E-05 48.3 8.3 79 191-269 199-299 (574)
285 TIGR02974 phageshock_pspF psp 83.6 2.1 4.6E-05 48.9 6.3 42 164-205 1-46 (329)
286 smart00763 AAA_PrkA PrkA AAA d 83.5 0.63 1.4E-05 52.5 2.0 44 163-206 52-103 (361)
287 PRK09280 F0F1 ATP synthase sub 83.5 3 6.5E-05 49.1 7.5 78 191-268 154-247 (463)
288 PLN03186 DNA repair protein RA 83.4 3.7 8E-05 46.8 8.1 46 191-237 133-183 (342)
289 PRK06835 DNA replication prote 83.4 1.4 3.1E-05 49.9 4.8 93 191-298 193-288 (329)
290 cd03247 ABCC_cytochrome_bd The 83.3 4.8 0.0001 41.4 8.4 53 251-303 108-161 (178)
291 cd03214 ABC_Iron-Siderophores_ 82.8 6 0.00013 40.8 8.9 111 191-304 35-163 (180)
292 PRK05541 adenylylsulfate kinas 82.7 2 4.2E-05 44.3 5.2 25 191-216 17-41 (176)
293 KOG0731 AAA+-type ATPase conta 82.6 17 0.00037 45.3 13.6 174 161-364 310-522 (774)
294 PRK05022 anaerobic nitric oxid 82.6 3.4 7.5E-05 50.6 8.1 132 161-299 186-332 (509)
295 PHA02244 ATPase-like protein 82.6 2.9 6.3E-05 47.4 6.7 16 191-206 129-144 (383)
296 TIGR00150 HI0065_YjeE ATPase, 82.3 1.1 2.4E-05 42.9 2.8 38 169-206 6-47 (133)
297 TIGR02236 recomb_radA DNA repa 82.3 4.3 9.2E-05 46.3 8.2 45 191-236 105-154 (310)
298 PRK06067 flagellar accessory p 81.9 3.6 7.9E-05 44.6 7.2 75 191-269 35-130 (234)
299 KOG1969 DNA replication checkp 81.7 2.8 6.1E-05 50.7 6.4 64 191-271 336-399 (877)
300 cd03238 ABC_UvrA The excision 81.4 4.9 0.00011 41.1 7.4 111 191-314 31-161 (176)
301 PRK12597 F0F1 ATP synthase sub 81.3 2.1 4.6E-05 50.5 5.3 83 186-268 144-246 (461)
302 KOG0733 Nuclear AAA ATPase (VC 81.2 12 0.00026 44.6 10.9 147 191-360 555-718 (802)
303 COG1157 FliI Flagellar biosynt 80.9 5.1 0.00011 45.5 7.7 80 186-268 164-262 (441)
304 TIGR03305 alt_F1F0_F1_bet alte 80.9 2 4.4E-05 50.3 4.9 78 191-268 148-241 (449)
305 KOG0734 AAA+-type ATPase conta 80.8 3.4 7.4E-05 48.0 6.4 86 162-270 304-407 (752)
306 COG0468 RecA RecA/RadA recombi 80.6 4.4 9.6E-05 44.4 7.1 76 191-268 70-150 (279)
307 cd03228 ABCC_MRP_Like The MRP 80.6 8.5 0.00018 39.3 8.9 53 252-304 107-160 (171)
308 PRK14722 flhF flagellar biosyn 80.5 3.5 7.6E-05 47.4 6.6 78 191-270 147-226 (374)
309 cd03222 ABC_RNaseL_inhibitor T 80.4 5.6 0.00012 40.7 7.4 94 191-304 35-137 (177)
310 COG1066 Sms Predicted ATP-depe 80.3 3.8 8.2E-05 46.4 6.4 91 172-270 80-179 (456)
311 cd03223 ABCD_peroxisomal_ALDP 80.0 7.8 0.00017 39.3 8.4 107 191-303 37-152 (166)
312 PRK06696 uridine kinase; Valid 79.9 1.3 2.7E-05 47.7 2.7 39 167-205 3-46 (223)
313 PRK08972 fliI flagellum-specif 79.7 4.5 9.8E-05 47.2 7.1 75 191-268 172-261 (444)
314 TIGR01817 nifA Nif-specific re 79.7 3.1 6.8E-05 51.5 6.4 133 160-299 194-341 (534)
315 PRK07667 uridine kinase; Provi 79.7 1.3 2.9E-05 46.2 2.7 36 171-206 3-42 (193)
316 TIGR01041 ATP_syn_B_arch ATP s 79.7 4 8.7E-05 48.3 6.8 78 191-268 151-247 (458)
317 KOG0728 26S proteasome regulat 79.1 26 0.00056 36.6 11.3 117 191-330 191-331 (404)
318 cd01134 V_A-ATPase_A V/A-type 79.0 8.6 0.00019 43.3 8.7 56 173-232 146-206 (369)
319 smart00369 LRR_TYP Leucine-ric 79.0 1.3 2.9E-05 28.4 1.5 21 567-587 1-21 (26)
320 smart00370 LRR Leucine-rich re 79.0 1.3 2.9E-05 28.4 1.5 21 567-587 1-21 (26)
321 PRK12678 transcription termina 78.9 1.1 2.4E-05 53.1 2.0 78 191-268 426-512 (672)
322 KOG0924 mRNA splicing factor A 78.7 5.2 0.00011 47.7 7.1 105 191-300 381-511 (1042)
323 cd01122 GP4d_helicase GP4d_hel 78.6 8.3 0.00018 43.0 8.9 43 191-235 40-82 (271)
324 PF10443 RNA12: RNA12 protein; 78.1 90 0.0019 36.4 16.5 120 260-383 149-296 (431)
325 PRK10646 ADP-binding protein; 78.0 1.8 3.9E-05 42.5 2.8 38 169-206 12-53 (153)
326 TIGR01039 atpD ATP synthase, F 77.6 3.7 7.9E-05 48.2 5.6 78 191-268 153-246 (461)
327 PRK06002 fliI flagellum-specif 77.5 6.4 0.00014 46.3 7.5 81 186-268 166-263 (450)
328 COG1419 FlhF Flagellar GTP-bin 77.5 7.1 0.00015 44.6 7.6 76 191-268 213-290 (407)
329 PRK08927 fliI flagellum-specif 77.5 5.8 0.00012 46.6 7.2 75 191-268 168-257 (442)
330 PRK12727 flagellar biosynthesi 77.5 6.6 0.00014 46.9 7.7 77 191-269 360-438 (559)
331 PHA00729 NTP-binding motif con 77.4 1.9 4.1E-05 45.4 3.0 22 310-331 120-141 (226)
332 TIGR03324 alt_F1F0_F1_al alter 77.3 6.9 0.00015 46.5 7.8 76 191-269 172-264 (497)
333 PTZ00035 Rad51 protein; Provis 77.2 10 0.00023 43.3 9.1 45 191-236 128-177 (337)
334 COG2842 Uncharacterized ATPase 77.1 26 0.00056 38.3 11.3 88 191-285 104-191 (297)
335 PRK00771 signal recognition pa 77.1 7.9 0.00017 45.8 8.3 76 191-268 105-184 (437)
336 PRK13948 shikimate kinase; Pro 77.1 14 0.00029 38.0 9.1 19 188-206 16-35 (182)
337 cd01125 repA Hexameric Replica 77.0 10 0.00022 41.3 8.7 15 191-205 11-25 (239)
338 KOG0730 AAA+-type ATPase [Post 76.8 10 0.00023 45.7 9.0 24 309-332 594-617 (693)
339 PRK06936 type III secretion sy 76.7 6.9 0.00015 45.9 7.5 75 191-268 172-261 (439)
340 COG1428 Deoxynucleoside kinase 76.6 1.2 2.6E-05 45.5 1.2 16 191-206 14-29 (216)
341 PRK15455 PrkA family serine pr 76.5 1.8 4E-05 51.6 2.8 43 163-205 77-127 (644)
342 PRK08149 ATP synthase SpaL; Va 76.2 5.8 0.00013 46.4 6.8 75 191-268 161-250 (428)
343 PF13604 AAA_30: AAA domain; P 76.1 3.1 6.6E-05 43.6 4.2 35 260-296 94-128 (196)
344 TIGR03499 FlhF flagellar biosy 75.9 5.2 0.00011 44.7 6.1 76 191-268 204-281 (282)
345 PF13207 AAA_17: AAA domain; P 75.9 1.2 2.6E-05 42.4 1.0 15 191-205 9-23 (121)
346 TIGR02858 spore_III_AA stage I 75.7 8 0.00017 42.6 7.4 125 170-304 97-234 (270)
347 cd03216 ABC_Carb_Monos_I This 75.7 5.6 0.00012 40.2 5.9 108 191-304 36-147 (163)
348 PRK05439 pantothenate kinase; 75.4 7.5 0.00016 43.5 7.1 74 186-260 87-166 (311)
349 cd02025 PanK Pantothenate kina 75.3 7.3 0.00016 41.6 6.8 31 191-221 9-40 (220)
350 COG2884 FtsE Predicted ATPase 75.2 13 0.00029 37.5 7.7 56 250-307 146-205 (223)
351 TIGR03877 thermo_KaiC_1 KaiC d 75.1 11 0.00025 40.8 8.4 31 191-222 31-61 (237)
352 PF12775 AAA_7: P-loop contain 75.1 0.97 2.1E-05 49.9 0.1 94 171-276 22-117 (272)
353 PRK12723 flagellar biosynthesi 74.6 13 0.00029 43.2 9.1 79 191-271 184-266 (388)
354 KOG0991 Replication factor C, 74.4 6.1 0.00013 40.8 5.4 60 162-221 27-89 (333)
355 PF13481 AAA_25: AAA domain; P 74.3 6.1 0.00013 41.3 6.0 32 191-222 42-82 (193)
356 COG0466 Lon ATP-dependent Lon 74.3 14 0.0003 45.2 9.2 100 161-271 322-429 (782)
357 PRK09270 nucleoside triphospha 74.0 8.6 0.00019 41.5 7.1 22 185-206 33-58 (229)
358 CHL00060 atpB ATP synthase CF1 73.9 6.3 0.00014 46.7 6.3 79 191-269 171-272 (494)
359 PRK13531 regulatory ATPase Rav 73.9 2.8 6.1E-05 49.4 3.4 44 162-206 20-64 (498)
360 KOG0743 AAA+-type ATPase [Post 73.5 1.7E+02 0.0037 34.3 17.0 72 291-372 339-415 (457)
361 PRK08233 hypothetical protein; 73.5 5.3 0.00012 41.3 5.2 16 191-206 13-28 (182)
362 PRK05986 cob(I)alamin adenolsy 73.4 5.3 0.00012 40.8 4.9 50 251-300 106-159 (191)
363 PRK07276 DNA polymerase III su 73.4 40 0.00088 37.4 12.1 69 258-327 103-172 (290)
364 cd01121 Sms Sms (bacterial rad 73.4 8.7 0.00019 44.6 7.3 30 191-221 92-121 (372)
365 cd01132 F1_ATPase_alpha F1 ATP 73.3 10 0.00022 41.4 7.2 75 191-268 79-170 (274)
366 TIGR03498 FliI_clade3 flagella 73.3 9.2 0.0002 44.9 7.4 76 191-268 150-239 (418)
367 COG0802 Predicted ATPase or ki 73.2 3 6.4E-05 40.4 2.8 39 168-206 8-50 (149)
368 TIGR00390 hslU ATP-dependent p 73.0 5.5 0.00012 46.0 5.4 74 161-234 11-103 (441)
369 PRK05800 cobU adenosylcobinami 72.9 1.6 3.5E-05 44.2 1.1 72 191-268 11-85 (170)
370 cd01120 RecA-like_NTPases RecA 72.8 9.1 0.0002 38.5 6.7 32 191-223 9-40 (165)
371 COG1223 Predicted ATPase (AAA+ 72.7 29 0.00062 36.8 9.8 147 161-330 120-297 (368)
372 CHL00059 atpA ATP synthase CF1 72.7 11 0.00023 44.8 7.7 76 191-269 151-243 (485)
373 TIGR00959 ffh signal recogniti 72.6 7.5 0.00016 45.9 6.6 79 191-269 109-192 (428)
374 PRK10820 DNA-binding transcrip 72.4 7.8 0.00017 47.6 7.0 59 162-221 204-266 (520)
375 PRK05201 hslU ATP-dependent pr 72.4 4.6 9.9E-05 46.7 4.6 75 161-235 14-107 (443)
376 PRK10867 signal recognition pa 72.2 6.1 0.00013 46.6 5.7 15 191-205 110-124 (433)
377 TIGR01650 PD_CobS cobaltochela 72.1 48 0.001 37.4 12.3 54 167-225 50-104 (327)
378 PRK05922 type III secretion sy 71.8 7.6 0.00017 45.5 6.3 75 191-268 167-256 (434)
379 PF10923 DUF2791: P-loop Domai 71.7 8.5 0.00019 44.8 6.6 76 163-239 26-113 (416)
380 PF00485 PRK: Phosphoribulokin 71.6 7.9 0.00017 40.5 6.0 71 191-262 9-86 (194)
381 PRK07594 type III secretion sy 71.6 11 0.00023 44.4 7.5 75 191-268 165-254 (433)
382 PRK11889 flhF flagellar biosyn 71.4 12 0.00026 43.0 7.4 79 191-270 251-331 (436)
383 PRK14974 cell division protein 71.3 9.6 0.00021 43.4 6.9 79 191-271 150-234 (336)
384 COG4608 AppF ABC-type oligopep 71.3 9.5 0.0002 41.1 6.3 115 191-308 49-179 (268)
385 PF00154 RecA: recA bacterial 71.2 7.5 0.00016 43.6 5.9 74 191-270 63-142 (322)
386 COG0563 Adk Adenylate kinase a 71.2 3.9 8.4E-05 41.8 3.4 18 191-208 10-27 (178)
387 PRK10733 hflB ATP-dependent me 71.1 19 0.00041 45.6 10.1 121 191-330 195-335 (644)
388 cd03281 ABC_MSH5_euk MutS5 hom 70.8 4.4 9.6E-05 43.0 3.9 49 257-305 106-160 (213)
389 COG0541 Ffh Signal recognition 70.6 13 0.00029 42.7 7.6 50 188-238 106-157 (451)
390 KOG0736 Peroxisome assembly fa 70.5 75 0.0016 39.5 13.9 94 158-270 668-775 (953)
391 PRK11388 DNA-binding transcrip 70.5 9 0.00019 48.8 7.2 127 162-298 325-466 (638)
392 KOG0079 GTP-binding protein H- 70.4 6 0.00013 37.3 4.0 90 170-271 4-93 (198)
393 smart00364 LRR_BAC Leucine-ric 70.3 2.4 5.3E-05 27.1 1.0 17 592-608 3-19 (26)
394 PTZ00088 adenylate kinase 1; P 70.1 2.4 5.2E-05 45.4 1.7 16 191-206 16-31 (229)
395 cd03246 ABCC_Protease_Secretio 70.1 10 0.00023 38.7 6.4 53 251-303 106-160 (173)
396 PRK04196 V-type ATP synthase s 70.0 6.1 0.00013 47.0 5.1 78 191-268 153-249 (460)
397 cd03115 SRP The signal recogni 70.0 7.6 0.00017 39.7 5.4 27 191-218 10-36 (173)
398 smart00367 LRR_CC Leucine-rich 70.0 2.6 5.7E-05 27.1 1.2 15 1360-1374 3-17 (26)
399 PF13238 AAA_18: AAA domain; P 69.6 2.1 4.6E-05 41.1 1.1 15 191-205 8-22 (129)
400 TIGR01042 V-ATPase_V1_A V-type 69.6 17 0.00038 43.8 8.6 55 174-232 216-275 (591)
401 PRK09099 type III secretion sy 69.5 10 0.00022 44.7 6.7 76 191-268 173-262 (441)
402 TIGR00554 panK_bact pantothena 69.3 10 0.00022 42.2 6.3 73 186-259 63-141 (290)
403 PRK09519 recA DNA recombinatio 69.0 11 0.00024 47.6 7.2 73 191-269 70-148 (790)
404 PRK14721 flhF flagellar biosyn 68.9 13 0.00027 43.7 7.3 76 191-268 201-278 (420)
405 TIGR03878 thermo_KaiC_2 KaiC d 68.6 12 0.00026 41.2 6.8 31 191-222 46-76 (259)
406 PRK13543 cytochrome c biogenes 68.5 30 0.00064 36.9 9.7 56 251-306 147-204 (214)
407 PRK14723 flhF flagellar biosyn 68.2 16 0.00034 46.2 8.2 77 191-269 195-273 (767)
408 PRK05688 fliI flagellum-specif 68.1 15 0.00032 43.4 7.6 75 191-268 178-267 (451)
409 cd01136 ATPase_flagellum-secre 68.0 18 0.00038 41.0 7.9 75 191-268 79-168 (326)
410 cd03230 ABC_DR_subfamily_A Thi 68.0 18 0.0004 36.9 7.7 54 251-304 105-160 (173)
411 PF08433 KTI12: Chromatin asso 67.9 6.2 0.00013 43.4 4.3 18 189-206 8-26 (270)
412 PRK12724 flagellar biosynthesi 67.6 6.3 0.00014 45.8 4.4 15 191-205 233-247 (432)
413 PRK04328 hypothetical protein; 67.5 14 0.00031 40.4 7.0 32 191-223 33-64 (249)
414 PRK06217 hypothetical protein; 67.3 6 0.00013 40.9 3.9 26 191-216 11-38 (183)
415 TIGR03496 FliI_clade1 flagella 67.0 14 0.0003 43.4 7.2 75 191-268 147-236 (411)
416 PRK09281 F0F1 ATP synthase sub 67.0 14 0.0003 44.5 7.3 76 191-269 172-264 (502)
417 PF07724 AAA_2: AAA domain (Cd 66.9 1.4 3E-05 44.8 -0.8 33 191-223 13-45 (171)
418 PRK06995 flhF flagellar biosyn 66.9 12 0.00025 44.8 6.5 79 188-268 262-343 (484)
419 TIGR00962 atpA proton transloc 66.8 15 0.00032 44.3 7.4 76 191-269 171-263 (501)
420 TIGR01818 ntrC nitrogen regula 66.8 20 0.00044 43.6 9.1 130 163-299 135-279 (463)
421 COG1102 Cmk Cytidylate kinase 66.8 8.6 0.00019 37.6 4.4 36 191-238 10-45 (179)
422 PRK04192 V-type ATP synthase s 66.5 6.3 0.00014 47.6 4.3 40 191-233 237-277 (586)
423 COG0125 Tmk Thymidylate kinase 66.5 6.2 0.00013 41.3 3.8 25 191-216 13-37 (208)
424 cd01131 PilT Pilus retraction 66.4 7.4 0.00016 40.8 4.4 102 191-303 11-113 (198)
425 COG1121 ZnuC ABC-type Mn/Zn tr 66.1 13 0.00029 39.9 6.1 51 251-303 149-203 (254)
426 cd02027 APSK Adenosine 5'-phos 65.9 21 0.00045 35.4 7.3 16 191-206 9-24 (149)
427 PF02367 UPF0079: Uncharacteri 65.3 2.7 5.8E-05 39.6 0.7 15 191-205 25-39 (123)
428 COG0488 Uup ATPase components 65.2 2.2E+02 0.0047 35.0 16.9 62 251-316 449-511 (530)
429 PRK06820 type III secretion sy 65.2 14 0.00031 43.5 6.8 75 191-268 173-262 (440)
430 COG1618 Predicted nucleotide k 65.0 4.1 8.8E-05 39.7 1.9 21 191-211 15-35 (179)
431 cd00544 CobU Adenosylcobinamid 65.0 14 0.0003 37.5 5.9 72 191-268 9-82 (169)
432 cd03217 ABC_FeS_Assembly ABC-t 64.9 15 0.00032 38.7 6.4 54 251-304 114-169 (200)
433 COG2274 SunT ABC-type bacterio 64.8 1.1E+02 0.0024 39.0 14.8 52 251-302 619-672 (709)
434 PRK12726 flagellar biosynthesi 64.7 13 0.00028 42.6 6.0 79 191-270 216-296 (407)
435 TIGR03575 selen_PSTK_euk L-ser 64.5 14 0.00031 41.9 6.4 19 188-206 5-24 (340)
436 PRK13765 ATP-dependent proteas 64.4 5.5 0.00012 49.5 3.4 75 161-237 30-105 (637)
437 TIGR01359 UMP_CMP_kin_fam UMP- 64.2 6.6 0.00014 40.6 3.6 16 191-206 9-24 (183)
438 TIGR03881 KaiC_arch_4 KaiC dom 64.1 18 0.0004 39.0 7.1 31 191-222 30-60 (229)
439 PRK15453 phosphoribulokinase; 63.9 60 0.0013 35.7 10.6 71 186-257 6-88 (290)
440 PRK05917 DNA polymerase III su 63.9 60 0.0013 36.0 10.8 60 258-317 94-154 (290)
441 PRK06793 fliI flagellum-specif 63.9 16 0.00036 42.9 6.9 109 191-305 166-292 (432)
442 PRK05703 flhF flagellar biosyn 63.7 14 0.00031 43.7 6.6 76 191-268 231-308 (424)
443 COG0055 AtpD F0F1-type ATP syn 63.5 9.5 0.00021 42.5 4.5 86 185-270 147-252 (468)
444 PRK13343 F0F1 ATP synthase sub 63.1 17 0.00037 43.5 7.0 76 191-269 172-264 (502)
445 PF07726 AAA_3: ATPase family 62.9 3.5 7.5E-05 38.9 1.0 16 191-206 9-24 (131)
446 COG0714 MoxR-like ATPases [Gen 62.8 11 0.00023 43.4 5.3 64 162-230 24-88 (329)
447 cd03215 ABC_Carb_Monos_II This 62.8 33 0.00071 35.4 8.4 54 251-304 114-169 (182)
448 PF03796 DnaB_C: DnaB-like hel 62.8 9.8 0.00021 42.0 4.8 45 191-237 29-73 (259)
449 smart00365 LRR_SD22 Leucine-ri 62.7 5.1 0.00011 25.8 1.4 17 590-606 1-17 (26)
450 COG0396 sufC Cysteine desulfur 62.5 39 0.00084 35.5 8.3 62 247-308 150-213 (251)
451 PRK07721 fliI flagellum-specif 62.4 12 0.00027 44.2 5.6 76 191-268 168-257 (438)
452 cd03250 ABCC_MRP_domain1 Domai 62.2 62 0.0014 34.1 10.6 54 251-304 137-193 (204)
453 KOG2004 Mitochondrial ATP-depe 62.2 7.2 0.00016 47.3 3.6 98 161-269 410-515 (906)
454 cd00267 ABC_ATPase ABC (ATP-bi 62.1 12 0.00026 37.5 4.9 110 191-305 35-146 (157)
455 TIGR02329 propionate_PrpR prop 61.8 13 0.00028 45.4 5.9 44 162-205 212-259 (526)
456 TIGR03497 FliI_clade2 flagella 61.7 21 0.00046 41.9 7.4 75 191-268 147-236 (413)
457 TIGR02788 VirB11 P-type DNA tr 61.6 8.2 0.00018 43.8 3.9 49 248-301 207-255 (308)
458 cd03282 ABC_MSH4_euk MutS4 hom 61.5 7.8 0.00017 40.7 3.5 48 258-307 107-159 (204)
459 COG0465 HflB ATP-dependent Zn 61.4 65 0.0014 39.5 11.4 176 160-362 148-357 (596)
460 cd00984 DnaB_C DnaB helicase C 61.1 32 0.00068 37.5 8.4 42 191-234 23-64 (242)
461 TIGR01069 mutS2 MutS2 family p 60.9 15 0.00033 47.1 6.6 112 258-384 401-518 (771)
462 PTZ00494 tuzin-like protein; P 60.7 47 0.001 38.4 9.3 162 159-328 368-542 (664)
463 cd03369 ABCC_NFT1 Domain 2 of 60.7 55 0.0012 34.5 9.9 53 252-304 136-189 (207)
464 cd03284 ABC_MutS1 MutS1 homolo 60.5 6.7 0.00015 41.8 2.8 47 258-305 108-159 (216)
465 PRK13407 bchI magnesium chelat 60.4 5.5 0.00012 45.3 2.2 44 161-204 7-52 (334)
466 TIGR00064 ftsY signal recognit 60.3 27 0.00059 38.6 7.6 77 191-269 82-164 (272)
467 PRK11823 DNA repair protein Ra 60.3 23 0.0005 42.4 7.5 31 191-222 90-120 (446)
468 KOG1051 Chaperone HSP104 and r 60.1 7.7 0.00017 49.4 3.6 45 162-206 186-233 (898)
469 PF03969 AFG1_ATPase: AFG1-lik 60.0 14 0.00031 42.6 5.5 97 191-301 72-169 (362)
470 TIGR00416 sms DNA repair prote 60.0 23 0.00049 42.5 7.4 30 191-221 104-133 (454)
471 PRK05973 replicative DNA helic 59.8 15 0.00032 39.5 5.2 30 191-221 74-103 (237)
472 cd02019 NK Nucleoside/nucleoti 59.5 4.9 0.00011 33.5 1.3 15 191-205 9-23 (69)
473 TIGR02030 BchI-ChlI magnesium 59.5 8.4 0.00018 43.9 3.5 43 162-204 4-48 (337)
474 cd02029 PRK_like Phosphoribulo 59.5 63 0.0014 35.2 9.7 68 191-259 9-84 (277)
475 PRK00279 adk adenylate kinase; 59.3 9.4 0.0002 40.7 3.7 16 191-206 10-25 (215)
476 PF03205 MobB: Molybdopterin g 59.3 5.9 0.00013 38.7 2.0 30 191-220 10-39 (140)
477 PRK09580 sufC cysteine desulfu 59.1 38 0.00083 37.0 8.6 53 252-304 156-210 (248)
478 PRK00625 shikimate kinase; Pro 58.9 4.5 9.7E-05 41.2 1.1 19 188-206 6-25 (173)
479 PRK07960 fliI flagellum-specif 58.9 13 0.00028 43.8 4.9 75 191-268 185-274 (455)
480 COG3265 GntK Gluconate kinase 58.8 18 0.00039 34.9 4.8 18 189-206 2-20 (161)
481 KOG0736 Peroxisome assembly fa 58.7 75 0.0016 39.6 11.0 44 310-361 556-599 (953)
482 PF08303 tRNA_lig_kinase: tRNA 58.6 5.1 0.00011 39.4 1.4 38 191-235 9-50 (168)
483 cd02021 GntK Gluconate kinase 58.4 34 0.00075 33.8 7.5 17 189-205 6-23 (150)
484 PRK02118 V-type ATP synthase s 58.2 22 0.00048 41.7 6.6 81 186-269 141-241 (436)
485 PRK13849 putative crown gall t 58.0 20 0.00043 38.6 5.9 36 191-227 12-47 (231)
486 TIGR03771 anch_rpt_ABC anchore 57.9 41 0.0009 36.0 8.4 54 251-304 123-178 (223)
487 PRK10923 glnG nitrogen regulat 57.6 19 0.00041 44.0 6.5 43 163-205 139-185 (469)
488 TIGR02546 III_secr_ATP type II 57.5 28 0.00061 41.2 7.5 75 191-268 155-244 (422)
489 PF02223 Thymidylate_kin: Thym 57.4 9 0.0002 39.8 3.1 20 189-208 3-23 (186)
490 TIGR02915 PEP_resp_reg putativ 57.2 16 0.00035 44.3 5.7 42 163-204 140-185 (445)
491 CHL00206 ycf2 Ycf2; Provisiona 56.9 56 0.0012 45.4 10.6 70 258-327 1731-1814(2281)
492 KOG2170 ATPase of the AAA+ sup 56.5 21 0.00046 38.8 5.5 109 161-284 81-203 (344)
493 PTZ00301 uridine kinase; Provi 56.3 5 0.00011 42.3 1.0 19 187-205 5-27 (210)
494 TIGR01425 SRP54_euk signal rec 56.2 14 0.00031 43.3 4.7 27 191-218 110-136 (429)
495 TIGR01026 fliI_yscN ATPase Fli 56.1 29 0.00062 41.3 7.3 75 191-268 173-262 (440)
496 PRK08472 fliI flagellum-specif 56.0 31 0.00068 40.7 7.4 72 191-268 167-255 (434)
497 PRK06547 hypothetical protein; 55.9 9 0.00019 39.0 2.7 16 191-206 25-40 (172)
498 KOG2035 Replication factor C, 55.8 19 0.00042 38.5 5.0 178 164-360 15-222 (351)
499 cd03287 ABC_MSH3_euk MutS3 hom 55.6 38 0.00083 36.1 7.5 47 258-305 109-160 (222)
500 PRK00889 adenylylsulfate kinas 55.6 12 0.00027 38.2 3.8 16 191-206 14-29 (175)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-82 Score=780.41 Aligned_cols=800 Identities=28% Similarity=0.421 Sum_probs=577.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHhhhhhhhhhhhcC---C--CCCC---Cccc
Q 000559 27 FPSEDGIRAELKKWEKNLVMIQAVLEDAEEKQLSNRAVKIWLDDLRALAYDVEDILDEQQLTT---R--PSLS---ILQN 98 (1422)
Q Consensus 27 ~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~---~--~~~~---~~~~ 98 (1422)
+....++++.+..|++++..++++++||++++.....+..|.+.+++++|++||.++.+.+.. . .... ....
T Consensus 20 ~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~ 99 (889)
T KOG4658|consen 20 SECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQ 99 (889)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHH
Confidence 334467788999999999999999999999999889999999999999999999999998621 1 0000 0111
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCcccccccccccccccccCCCCcccccchhHHHHHHHh
Q 000559 99 LPSNLVSQINLGSKIKEVTSRLEELCDRRNVLQLENTSSGTGRAASVSTVSWQRLHTTCLATEPAVYGRDGDKAKVLDMV 178 (1422)
Q Consensus 99 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~i~~~l 178 (1422)
......+.++.+..+..+.+++..+.+....++....-...+. . .......++.+...+.. ||.++.++++++.|
T Consensus 100 ~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~---~-~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L 174 (889)
T KOG4658|consen 100 RLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGE---S-LDPREKVETRPIQSESD-VGLETMLEKLWNRL 174 (889)
T ss_pred HHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccc---c-ccchhhcccCCCCcccc-ccHHHHHHHHHHHh
Confidence 1111245556666777777777777766666654432110110 0 11111223444444555 99999999999999
Q ss_pred cCCCCCCCcccc----cccHHHHHHHHhcccc-ccc-CCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCC--CChhHHHH
Q 000559 179 LSHDTNNDDVNF----RVGKTTLARLVYNDLA-VED-FNSRAWVCVSDDFDILRISKAILESITLSSCDF--KDLNPVQV 250 (1422)
Q Consensus 179 ~~~~~~~~~v~i----GvGKTtLa~~v~~~~~-~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~ 250 (1422)
.+++. +++|| |+||||||++++|+.. ++. ||.++||+||+.++...++++|++.++...... ...++.+.
T Consensus 175 ~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~ 252 (889)
T KOG4658|consen 175 MEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELAS 252 (889)
T ss_pred ccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHH
Confidence 98876 56666 9999999999999998 777 999999999999999999999999998744322 23468889
Q ss_pred HHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHh-hCCCCceeeCCCCChhhHHHHHHHh
Q 000559 251 KLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALT-LGCPGECHNLELLSDNDCWSVFKKH 329 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~-~~~~~~~~~l~~l~~~~~~~lf~~~ 329 (1422)
.+.+.|++|||+|||||||+. .+|+.++.++|....||||++|||++.|+.. +++. ..+++++|+.+|||+||++.
T Consensus 253 ~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~-~~~~v~~L~~~eaW~LF~~~ 329 (889)
T KOG4658|consen 253 KLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD-YPIEVECLTPEEAWDLFQKK 329 (889)
T ss_pred HHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC-ccccccccCccccHHHHHHh
Confidence 999999999999999999999 7799999999999899999999999999988 6664 89999999999999999999
Q ss_pred hhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHHhccccCCCC-----CCChhHHHHHhh
Q 000559 330 AFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDILNSNIWDLSD-----DGEIPAVLQLSY 404 (1422)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~-----~~~i~~~l~~sy 404 (1422)
||..... .++ .++++|++|+++|+|+|||++++|+.|+.|.+..+|+++.+...+.... .+.+++++++||
T Consensus 330 v~~~~~~-~~~---~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSy 405 (889)
T KOG4658|consen 330 VGPNTLG-SHP---DIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSY 405 (889)
T ss_pred hcccccc-ccc---cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccH
Confidence 9875332 233 5889999999999999999999999999999999999999876555221 237999999999
Q ss_pred ccCchhhhHHhhhhccCCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHHHHHhcccccccc--CCccccchhH
Q 000559 405 HHLPSHLKRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRSIFQQVN--GDVSKFVMHD 482 (1422)
Q Consensus 405 ~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~~mH~ 482 (1422)
+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+...+..++++|+.|+.+||+++|++... ++..+|+|||
T Consensus 406 d~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHD 485 (889)
T KOG4658|consen 406 DNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHD 485 (889)
T ss_pred hhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeH
Confidence 99999999999999999999999999999999999999887778899999999999999999999865 4668899999
Q ss_pred HHHHHHHHhcc-----cceEEeccc--cCCCCcccccccceEEeeeeCCCCCcccccccccCcccceecccccccCcccc
Q 000559 483 LINDLARSVSG-----ETSFRLEDV--SGANNRSQRFERARHSSFISGDFDGKSKFEVFNKVEHLRTFWPIILHEGTRYI 555 (1422)
Q Consensus 483 l~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~ 555 (1422)
+||++|.++++ ++...+..+ .........+..+|+++++....... ..-.+.++|+||.+..+.. .
T Consensus 486 vvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~----~ 558 (889)
T KOG4658|consen 486 VVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD----W 558 (889)
T ss_pred HHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecch----h
Confidence 99999999999 444444432 11123344556789999987765433 2334566899999887521 1
Q ss_pred chhhhHHHhcCCCcccEEEecccc-cCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCcccccc
Q 000559 556 TNFVLSEVLSKFKKLRVLSLRNYY-ITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNV 634 (1422)
Q Consensus 556 ~~~~~~~~~~~~~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i 634 (1422)
...+...+|..++.||||||++|. +.++|++|+.|.+||||+|+++.|+.+|..+++|++|.+||+..+.....+|..+
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchh
Confidence 244566779999999999999876 7899999999999999999999999999999999999999999987777777777
Q ss_pred ccccccCeEeecCCCccccccccccccccccccceeEeccCCCCChhcccccccCC---ceeEEeCccccccccccccCC
Q 000559 635 ENLIDLLYFDISGQNLITEMPVGMNKLKCLLTLSNFVVGLNTGSGLEDLKSLKFLR---GKLCISKLRNVVQDITEPILS 711 (1422)
Q Consensus 635 ~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~i~~l~~L~~L~---~~l~i~~l~~~~~~~~~~~l~ 711 (1422)
..|.+||+|.+.... ...-...++.+.+|++|........+...+..+..+..|+ ..+.+ ...........+.
T Consensus 639 ~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~---~~~~~~~~~~~~~ 714 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI---EGCSKRTLISSLG 714 (889)
T ss_pred hhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh---cccccceeecccc
Confidence 889999999997654 1111122555566666654444433332223333333332 11111 1122334455667
Q ss_pred CCCccCcEEEEEeccccCCCcccCCcchHHHhcccCCCCCccEEEEEeECCCCCCCCCCCCCCCcccEEEEeCCCCCCcC
Q 000559 712 DKEDLEVLQLEWESLYLHESSECSRVPDINVLDRLRPHGNLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCL 791 (1422)
Q Consensus 712 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 791 (1422)
.+.+|+.|.+........... .......+. .++++..+.+.++.....+.|... .++|+.|.+..|...+.+
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~---~~~~~~~~~---~f~~l~~~~~~~~~~~r~l~~~~f--~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIE---WEESLIVLL---CFPNLSKVSILNCHMLRDLTWLLF--APHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cccCcceEEEEcCCCchhhcc---cccccchhh---hHHHHHHHHhhccccccccchhhc--cCcccEEEEecccccccC
Confidence 778888888775543211000 000000000 123444455555555556666532 578888888887755433
Q ss_pred -CCCCCCCCcchhhhcCCcceeEecccccCCCCCCCCCcccee-ecccCCccccccccCCCCccccCcccceeecccCcc
Q 000559 792 -PALGALPSLKELTIKGLRELITIGSEIYGDDCLKPFQSLETL-CFQNLGVWSHWDPIGEDGQVEKFPVLRKLSILNCPR 869 (1422)
Q Consensus 792 -~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~f~~L~~L-~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 869 (1422)
|....+..++.+.+ +|.+++.+ .+.+.+.+......+.. ++.|+.+.+..||+
T Consensus 787 i~~~k~~~~l~~~i~--------------------~f~~~~~l~~~~~l~~l~~i~~~~l~-----~~~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 787 IPKLKALLELKELIL--------------------PFNKLEGLRMLCSLGGLPQLYWLPLS-----FLKLEELIVEECPK 841 (889)
T ss_pred CCHHHHhhhcccEEe--------------------cccccccceeeecCCCCceeEecccC-----ccchhheehhcCcc
Confidence 33333333333111 14444444 34444443332222221 55577777777777
Q ss_pred ccccCCCCCCCccEEEEeCC
Q 000559 870 LSERLPDHLPSLEELEVRGC 889 (1422)
Q Consensus 870 l~~~~p~~l~~L~~L~l~~~ 889 (1422)
+. . +|.+.++.+.+|
T Consensus 842 l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 842 LG-K----LPLLSTLTIVGC 856 (889)
T ss_pred cc-c----Cccccccceecc
Confidence 65 3 344555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-60 Score=624.04 Aligned_cols=523 Identities=20% Similarity=0.257 Sum_probs=381.0
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccCCCCCCCc---ccccccccccccccccCCCCcccccchhHHHHHHHhcCCCCCCC
Q 000559 110 GSKIKEVTSRLEELCDRRNVLQLENTSSGTGRA---ASVSTVSWQRLHTTCLATEPAVYGRDGDKAKVLDMVLSHDTNND 186 (1422)
Q Consensus 110 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~i~~~l~~~~~~~~ 186 (1422)
..+++++++++.+++...+.. .... ..+. .............++..+...+|||++.++++..+|.......+
T Consensus 133 ~~~~~~w~~al~~~~~~~g~~-~~~~---~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~ 208 (1153)
T PLN03210 133 EDEKIQWKQALTDVANILGYH-SQNW---PNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVR 208 (1153)
T ss_pred hhHHHHHHHHHHHHhCcCcee-cCCC---CCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceE
Confidence 356888999888887754321 1110 0000 00111112222223334456799999999999999865555556
Q ss_pred cccc----cccHHHHHHHHhcccccccCCcEEEEEE---cCc-----------cc-HHHHHHHHHHHhcCCCC-CCCChh
Q 000559 187 DVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCV---SDD-----------FD-ILRISKAILESITLSSC-DFKDLN 246 (1422)
Q Consensus 187 ~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~---s~~-----------~~-~~~~~~~i~~~l~~~~~-~~~~~~ 246 (1422)
+|+| |+||||||+++|++.. ..|++.+|+.. +.. ++ ...++++++.++..... ....
T Consensus 209 vvgI~G~gGiGKTTLA~~l~~~l~-~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~-- 285 (1153)
T PLN03210 209 MVGIWGSSGIGKTTIARALFSRLS-RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH-- 285 (1153)
T ss_pred EEEEEcCCCCchHHHHHHHHHHHh-hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC--
Confidence 6776 9999999999999753 33888887742 111 11 22455556655543211 1111
Q ss_pred HHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCCCCceeeCCCCChhhHHHHH
Q 000559 247 PVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLELLSDNDCWSVF 326 (1422)
Q Consensus 247 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~l~~~~~~~lf 326 (1422)
...+++.+++||+||||||||+. ..|+.+.....+.++||+||||||++.++..+++. ++|+++.+++++||+||
T Consensus 286 --~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~-~~~~v~~l~~~ea~~LF 360 (1153)
T PLN03210 286 --LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID-HIYEVCLPSNELALEMF 360 (1153)
T ss_pred --HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC-eEEEecCCCHHHHHHHH
Confidence 24577889999999999999887 77999888777778999999999999999887766 89999999999999999
Q ss_pred HHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHHhccccCCCCCCChhHHHHHhhcc
Q 000559 327 KKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDILNSNIWDLSDDGEIPAVLQLSYHH 406 (1422)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~ 406 (1422)
+++||+...+ ++ ++.+++++|+++|+|+|||++++|++|+++ +..+|+.++++..... +..|.++|++||+.
T Consensus 361 ~~~Af~~~~~--~~---~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~--~~~I~~~L~~SYd~ 432 (1153)
T PLN03210 361 CRSAFKKNSP--PD---GFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL--DGKIEKTLRVSYDG 432 (1153)
T ss_pred HHHhcCCCCC--cH---HHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc--cHHHHHHHHHhhhc
Confidence 9999975432 22 678899999999999999999999999987 6789999998865432 34799999999999
Q ss_pred Cch-hhhHHhhhhccCCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHHHHHhccccccccCCccccchhHHHH
Q 000559 407 LPS-HLKRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRSIFQQVNGDVSKFVMHDLIN 485 (1422)
Q Consensus 407 L~~-~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~mH~l~~ 485 (1422)
|++ ..|.||+++|+||.++.+ +.+..|++.+.+.. +..++.|+++||++... ..+.|||++|
T Consensus 433 L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~ 495 (1153)
T PLN03210 433 LNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQ 495 (1153)
T ss_pred cCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHH
Confidence 987 599999999999998755 44778888775532 22388999999998754 4699999999
Q ss_pred HHHHHhcccce-------EEeccc--cCCCCcccccccceEEeeeeCCCCCcc-cccccccCcccceecccccccCcccc
Q 000559 486 DLARSVSGETS-------FRLEDV--SGANNRSQRFERARHSSFISGDFDGKS-KFEVFNKVEHLRTFWPIILHEGTRYI 555 (1422)
Q Consensus 486 ~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~~~~-~~~~~~~~~~Lr~l~~~~~~~~~~~~ 555 (1422)
++|++++.++. +.+... ............++++++......... ...+|.+|++|+.|.+..........
T Consensus 496 ~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~ 575 (1153)
T PLN03210 496 EMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKE 575 (1153)
T ss_pred HHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccc
Confidence 99999987653 111110 000001112244666665433332211 23457889999998775431100000
Q ss_pred chhhhHHHhcCC-CcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCcccccc
Q 000559 556 TNFVLSEVLSKF-KKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNV 634 (1422)
Q Consensus 556 ~~~~~~~~~~~~-~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i 634 (1422)
....++..|..+ .+||.|++.++.++.+|..| ...+|++|+|++|.+..+|..+..+++|++|+|++|..++.+| .+
T Consensus 576 ~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 576 VRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred ceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-cc
Confidence 011223334444 56999999999999999988 5799999999999999999999999999999999988888898 48
Q ss_pred ccccccCeEeecCCCccccccccccccccccccceeE
Q 000559 635 ENLIDLLYFDISGQNLITEMPVGMNKLKCLLTLSNFV 671 (1422)
Q Consensus 635 ~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 671 (1422)
+.+++|++|++++|..+..+|..++++++|+.|++..
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 9999999999999988899999999999999987643
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9e-39 Score=425.91 Aligned_cols=204 Identities=17% Similarity=0.208 Sum_probs=149.3
Q ss_pred ccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCCcccCCCCCCCCCCcEEEEe
Q 000559 1148 ALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEIS 1227 (1422)
Q Consensus 1148 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 1227 (1422)
+|+.|++++|...+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|..+ ..++|+.|+++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls 483 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLS 483 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECc
Confidence 57777777777766677777777777777777777777777777777888888888887776666644 34678888888
Q ss_pred cCCCCCcCccccCCCCccceeecccccCCCCCCccccccccccccCcccccccCcCCCcceEEecCCCCCcccccccccc
Q 000559 1228 RCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALSFPEVSVRM 1307 (1422)
Q Consensus 1228 ~n~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~ 1307 (1422)
+|.+.+.+|..+.++++|+.|++++|...+.+|. .+.++++|++|+|++|...+.+|. .+
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-----------------~~~~l~~L~~L~Ls~N~l~~~~p~---~~ 543 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-----------------ELSSCKKLVSLDLSHNQLSGQIPA---SF 543 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCCh-----------------HHcCccCCCEEECCCCcccccCCh---hH
Confidence 8887777777777888888888888877666665 345677788888888777777776 56
Q ss_pred cCCccccceeccccccccCCCcCCCCCCCcccceeccCCCCCCCCCCCCCCCCcCeeeccCCcChh
Q 000559 1308 RLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKSFPWEGLPSSLQQLYVEDCPQLG 1373 (1422)
Q Consensus 1308 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~sL~~L~i~~c~~L~ 1373 (1422)
..+++|+.|++++|+....+| ..+.++++|+.|++++|+....+|..+.+.++....+.++|.++
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLC 608 (968)
T ss_pred hCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcccc
Confidence 667788888888877666777 56777888888888887766777765555555556666666553
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-39 Score=367.58 Aligned_cols=273 Identities=35% Similarity=0.592 Sum_probs=218.4
Q ss_pred cchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcCCCC-
Q 000559 167 RDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITLSSC- 240 (1422)
Q Consensus 167 r~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~- 240 (1422)
||.++++|.+.|.....+.++|+| |+||||||+++|++..++. |+.++||++++..+..+++++|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999986655566666 9999999999999876666 9999999999999999999999999987743
Q ss_pred --CCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCCCCceeeCCCCC
Q 000559 241 --DFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLELLS 318 (1422)
Q Consensus 241 --~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~l~ 318 (1422)
...+.++....+++.|+++++||||||||+. ..|+.+...++.+..|++||||||+..++..++.....+++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4467788899999999999999999999987 689999888887778999999999999987776434789999999
Q ss_pred hhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHHhccccCCCC----CC
Q 000559 319 DNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDILNSNIWDLSD----DG 394 (1422)
Q Consensus 319 ~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~~----~~ 394 (1422)
.++|++||.+.++... ....+ ...+.+++|+++|+|+||||+++|++|+.+....+|+++++........ ..
T Consensus 159 ~~ea~~L~~~~~~~~~-~~~~~---~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 159 EEEALELFKKRAGRKE-SESPE---DLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp HHHHHHHHHHHHTSHS-----T---TSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccc-ccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999997654 11222 5567899999999999999999999997766778899988764444322 23
Q ss_pred ChhHHHHHhhccCchhhhHHhhhhccCCCCcccChHHHHHHHHHhCCcCCC
Q 000559 395 EIPAVLQLSYHHLPSHLKRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQS 445 (1422)
Q Consensus 395 ~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~ 445 (1422)
.+..++.+||+.||++.|.||+|||+||+++.|+++.++++|+++|||+..
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 799999999999999999999999999999999999999999999999653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-37 Score=412.76 Aligned_cols=499 Identities=20% Similarity=0.240 Sum_probs=290.5
Q ss_pred HHHhcCCCcccEEEecccccC-ccCcccc-CCCCcceeeecCcccc-ccCcccccCcccceeecccccccCccccccccc
Q 000559 561 SEVLSKFKKLRVLSLRNYYIT-EVPNSIR-LLTHLRYLNFSGTRIC-HIPESVGFLSHLQILLLKDCHRLKKLPTNVENL 637 (1422)
Q Consensus 561 ~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~-~L~~L~~L~L~~n~i~-~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L 637 (1422)
+..|..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|+++ .+|. +.+++|++|+|++|...+.+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 445778888888888888876 6776654 8888888888888876 4453 567888888888876667788888888
Q ss_pred cccCeEeecCCCccccccccccccccccccceeEeccCCCCChhcccccccCCceeEEeCccccccccccccCCCCCccC
Q 000559 638 IDLLYFDISGQNLITEMPVGMNKLKCLLTLSNFVVGLNTGSGLEDLKSLKFLRGKLCISKLRNVVQDITEPILSDKEDLE 717 (1422)
Q Consensus 638 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~i~~l~~L~~L~~~l~i~~l~~~~~~~~~~~l~~~~~L~ 717 (1422)
++|++|++++|.+.+.+|..++++++|++|++..+.... ..+..+.++++|+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----------------------------~~p~~l~~l~~L~ 215 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG----------------------------QIPRELGQMKSLK 215 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC----------------------------cCChHHcCcCCcc
Confidence 888888888888667778778888888888765544221 1122334445555
Q ss_pred cEEEEEeccccCCCcccCCcchHHHhcccCCCCCccEEEEEeECCCCCCCCCCCCCCCcccEEEEeCCCCCCcCC-CCCC
Q 000559 718 VLQLEWESLYLHESSECSRVPDINVLDRLRPHGNLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCLP-ALGA 796 (1422)
Q Consensus 718 ~L~l~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~ 796 (1422)
.|++++|.+.. .+|..+.. +++|+.|++++|.+.+.+| .+++
T Consensus 216 ~L~L~~n~l~~-----------------------------------~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 216 WIYLGYNNLSG-----------------------------------EIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred EEECcCCccCC-----------------------------------cCChhHhc--CCCCCEEECcCceeccccChhHhC
Confidence 55555444321 12333322 4455555555554444444 3455
Q ss_pred CCCcchhhhcCCcceeEecccccCCCCCCCCCccceeecccCCccccccccCCCCccccCcccceeecccCccccccCCC
Q 000559 797 LPSLKELTIKGLRELITIGSEIYGDDCLKPFQSLETLCFQNLGVWSHWDPIGEDGQVEKFPVLRKLSILNCPRLSERLPD 876 (1422)
Q Consensus 797 l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~ 876 (1422)
+++|++|++++|...+.++..+.. +++|+.|++.++....... .....+++|+.|++++| .+.+.+|.
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~l~~n-~~~~~~~~ 326 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFS------LQKLISLDLSDNSLSGEIP-----ELVIQLQNLEILHLFSN-NFTGKIPV 326 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhh------ccCcCEEECcCCeeccCCC-----hhHcCCCCCcEEECCCC-ccCCcCCh
Confidence 555555555544332222222111 2222222222211100000 00001334444444431 22222221
Q ss_pred CCCCccEEEEeCCCCccccCCCCCcceEEEeccCCCccccccccccccccccccccccccccccccccceEEEEecCcch
Q 000559 877 HLPSLEELEVRGCEKLVVSLSGLPLLCKLELSSCKRMVCRSIDSQSIKHATLSNVSEFSRLSRHNFQKVECLKIIGCEEL 956 (1422)
Q Consensus 877 ~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~L~~L~i~~c~~l 956 (1422)
.+..+++|+.|++++|...
T Consensus 327 ------------------~~~~l~~L~~L~L~~n~l~------------------------------------------- 345 (968)
T PLN00113 327 ------------------ALTSLPRLQVLQLWSNKFS------------------------------------------- 345 (968)
T ss_pred ------------------hHhcCCCCCEEECcCCCCc-------------------------------------------
Confidence 2333444444444444321
Q ss_pred hhhhhhhhhcccccccccccccceEEecccCCccchhhh-ccccCCceEEEccCcCccccchHhhhccCccceEEecCCC
Q 000559 957 EHLWNEICLEELPHGLHSVASLRKLFVANCQSLVSFLEA-CFLSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQ 1035 (1422)
Q Consensus 957 ~~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~ 1035 (1422)
+.+|..+..+++|+.|++++|.....++.. ..+++|+.|++++|.....+|.. +..+++|+.|++++|.
T Consensus 346 ---------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 346 ---------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNS 415 (968)
T ss_pred ---------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCE
Confidence 123333444455555555554332222221 12344555555555333333322 2345555555555542
Q ss_pred CccccccccCCccCcEEEeeccCCcccccccccccCCcCCccEEeccCCCCCccccccCcccccccceeeccCCCCccCC
Q 000559 1036 SLMLIARRQLPSSLTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQTCPKLKSLS 1115 (1422)
Q Consensus 1036 ~l~~i~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~~~~L~~l~ 1115 (1422)
....+| ..+..+++|+.|++++|.....++.....+++|+.|++++|.
T Consensus 416 l~~~~p--------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~------ 463 (968)
T PLN00113 416 FSGELP--------------------------SEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK------ 463 (968)
T ss_pred eeeECC--------------------------hhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce------
Confidence 211111 011223445555555544332222222222233333333322
Q ss_pred cccCCcccccceEEEecccccccccCCCCCCCccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCc
Q 000559 1116 SSEGQLPVAIKHLEVQNCAELTTLSSTGKLPEALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLV 1195 (1422)
Q Consensus 1116 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 1195 (1422)
....++.... ..+|+.|++++|...+..|..+.++++|+.|++++|.+.+.+|..+.+++
T Consensus 464 -------------------~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 464 -------------------FFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred -------------------eeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 1111111111 14799999999998888898999999999999999999999999999999
Q ss_pred ccceEeccCCCCCcccCCCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeecccccCCCCCCc
Q 000559 1196 SLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPT 1261 (1422)
Q Consensus 1196 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~ 1261 (1422)
+|++|+|++|...+.+|..+..+++|+.|++++|++.+.+|..+.++++|+.|++++|...+.+|.
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 999999999999899999999999999999999999999999999999999999999988888885
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.8e-28 Score=263.54 Aligned_cols=363 Identities=19% Similarity=0.225 Sum_probs=265.8
Q ss_pred cccccccceEEecccCCccchhhhcc-ccCCceEEEccCcCccccchHhhhccCccceEEecCCCCccccccccCCc--c
Q 000559 972 LHSVASLRKLFVANCQSLVSFLEACF-LSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIARRQLPS--S 1048 (1422)
Q Consensus 972 ~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~--~ 1048 (1422)
|.++++|+.+.+..| .+..+|..+. ..+|+.|+|.+| .+.++.....+.++.|+.|+|+. +.+..++...||. +
T Consensus 98 f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVN 174 (873)
T ss_pred HhcCCcceeeeeccc-hhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCC
Confidence 566677777777666 4555555544 334777777777 56666666666677777777777 5666676666664 3
Q ss_pred CcEEEeeccCCcccccccccccCCcCCccEEeccCCCCCccccccCcccccccceeeccCCCCccCCcccCCcccccceE
Q 000559 1049 LTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQTCPKLKSLSSSEGQLPVAIKHL 1128 (1422)
Q Consensus 1049 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~L~~L 1128 (1422)
+++|+ +..+.+.......|.++.+|.+|.|+.|+ ++.+|. -.+.++++|+.+.+..+.+ .-.+.+
T Consensus 175 i~~L~---La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~----------r~Fk~L~~L~~LdLnrN~i-rive~l 239 (873)
T KOG4194|consen 175 IKKLN---LASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQ----------RSFKRLPKLESLDLNRNRI-RIVEGL 239 (873)
T ss_pred ceEEe---eccccccccccccccccchheeeecccCc-ccccCH----------HHhhhcchhhhhhccccce-eeehhh
Confidence 44443 33445555556666777778888888766 222222 1223333344333333222 111111
Q ss_pred EEecccccccccCCCCCCCccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCC
Q 000559 1129 EVQNCAELTTLSSTGKLPEALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSL 1208 (1422)
Q Consensus 1129 ~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 1208 (1422)
. +.++ ++|+.|.+..|.+...-.+.|..+.++++|+|..|++...-.+++.++++|+.|++++|...
T Consensus 240 t------------FqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 240 T------------FQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred h------------hcCc-hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 1 2233 37888888888877777888999999999999999998888889999999999999999877
Q ss_pred cccCCCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeecccccCCCCCCccccccccccccCcccccccCcCCCcce
Q 000559 1209 VSFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRK 1288 (1422)
Q Consensus 1209 ~~~~~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~ 1288 (1422)
..-++.+..+++|+.|+|++|.+...-+++|..|..|++|+|++|... . +....|..+++|++
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~--------~---------l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID--------H---------LAEGAFVGLSSLHK 369 (873)
T ss_pred eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH--------H---------HHhhHHHHhhhhhh
Confidence 777888888899999999999877777778999999999999999321 1 11224667899999
Q ss_pred EEecCCCCCcccccccccccCCccccceeccccccccCCCcCCCCCCCcccceeccCCCCCCCCCCCCC-CCCcCeeecc
Q 000559 1289 LEIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKSFPWEGL-PSSLQQLYVE 1367 (1422)
Q Consensus 1289 L~L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~sL~~L~i~ 1367 (1422)
|||++|.....+.+.+..+..+++|+.|++.+ |++++++..+|.++++|++|+|.+ +.+.++..++| +..|++|.+.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 99999988777777777888899999999999 789999999999999999999999 56888877777 6699999999
Q ss_pred CCcChhhhhhcCCCCcc
Q 000559 1368 DCPQLGANCKRYGPEWS 1384 (1422)
Q Consensus 1368 ~c~~L~~~~~~~~~~~~ 1384 (1422)
.-..|+++--+|...|.
T Consensus 448 SssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 448 SSSFLCDCQLKWLAQWL 464 (873)
T ss_pred ccceEEeccHHHHHHHH
Confidence 98888886666777774
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.1e-28 Score=258.02 Aligned_cols=481 Identities=21% Similarity=0.218 Sum_probs=254.0
Q ss_pred cccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeecCC
Q 000559 569 KLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISGQ 648 (1422)
Q Consensus 569 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~ 648 (1422)
-|+.|++++|.+..+-..+.+|..|.+|++++|++.++|++++.+..++.|+.++| .+.++|+.++.+.+|++|+.++|
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc
Confidence 34455555555555555555555555555555555555555555555555555553 45555555555555555555555
Q ss_pred CccccccccccccccccccceeEeccCC-CCChhcccccccCCceeEEeCccccccccccccCCCCCccCcEEEEEeccc
Q 000559 649 NLITEMPVGMNKLKCLLTLSNFVVGLNT-GSGLEDLKSLKFLRGKLCISKLRNVVQDITEPILSDKEDLEVLQLEWESLY 727 (1422)
Q Consensus 649 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~-~~~i~~l~~L~~L~~~l~i~~l~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 727 (1422)
. ..++|++++.+..|..|+...+.+.+ +..+..+.++..+ ++.+|.+.
T Consensus 125 ~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l------------------------------~~~~n~l~ 173 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL------------------------------DLEGNKLK 173 (565)
T ss_pred c-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHh------------------------------hccccchh
Confidence 5 44555555555555555544444333 2333333333222 11112110
Q ss_pred cCCCcccCCcchHHHhcccCCCCCccEEEEEeECCCCCCCCCCCCCCCcccEEEEeCCCCCCcCCCCCCCCCcchhhhcC
Q 000559 728 LHESSECSRVPDINVLDRLRPHGNLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCLPALGALPSLKELTIKG 807 (1422)
Q Consensus 728 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~ 807 (1422)
. .+ +....++.|++|+.+.|....+|..++. +.+|..|+|..|.+. .+|.|+.+..|++|+++.
T Consensus 174 ~--------l~-----~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 174 A--------LP-----ENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKIR-FLPEFPGCSLLKELHVGE 237 (565)
T ss_pred h--------CC-----HHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcc
Confidence 0 00 0111134566677777777788888875 888999999988764 577888889999999865
Q ss_pred CcceeEecccccCCCCCCCCCccceeecccCCccccccccCCCCccccCcccceeecccCccccccCCC---CCCCccEE
Q 000559 808 LRELITIGSEIYGDDCLKPFQSLETLCFQNLGVWSHWDPIGEDGQVEKFPVLRKLSILNCPRLSERLPD---HLPSLEEL 884 (1422)
Q Consensus 808 ~~~~~~i~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~l~~L~~L 884 (1422)
| .++.++.+.... ++++..|++.+ ++++ .+|. -+.+|+.|
T Consensus 238 N-~i~~lpae~~~~----------------------------------L~~l~vLDLRd-Nklk-e~Pde~clLrsL~rL 280 (565)
T KOG0472|consen 238 N-QIEMLPAEHLKH----------------------------------LNSLLVLDLRD-NKLK-EVPDEICLLRSLERL 280 (565)
T ss_pred c-HHHhhHHHHhcc----------------------------------cccceeeeccc-cccc-cCchHHHHhhhhhhh
Confidence 4 455665544321 55566666666 6666 5664 24566667
Q ss_pred EEeCCC--CccccCCCCCcceEEEeccCCCcccccccccc-----cccccccc-ccccccccccccccceEEEEecCcch
Q 000559 885 EVRGCE--KLVVSLSGLPLLCKLELSSCKRMVCRSIDSQS-----IKHATLSN-VSEFSRLSRHNFQKVECLKIIGCEEL 956 (1422)
Q Consensus 885 ~l~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----L~~L~~~~-~~~~~~l~~~~~~~L~~L~i~~c~~l 956 (1422)
++++|. .++..++++ +|+.|-+.+|+..++.....+. +++|.-.. +.++..- .+ =.-.
T Consensus 281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s-e~-------~~e~----- 346 (565)
T KOG0472|consen 281 DLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS-EG-------GTET----- 346 (565)
T ss_pred cccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC-cc-------cccc-----
Confidence 777663 455677777 8888888888876654432111 11111000 0000000 00 0000
Q ss_pred hhhhhhhhhcccccccccccccceEEecccCCccchhhhccccCCceEEEccCcCccccchHhhhccC--ccceEEecCC
Q 000559 957 EHLWNEICLEELPHGLHSVASLRKLFVANCQSLVSFLEACFLSNLSELVIQNCSALISLNEVTKHNYL--HLKSLQIEGC 1034 (1422)
Q Consensus 957 ~~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~l~--~L~~L~L~~c 1034 (1422)
....|. ..++......+.+.|++++- +++.+|..+|+.-. -....+++.
T Consensus 347 --------~~t~~~-------------------~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~Vnfsk- 397 (565)
T KOG0472|consen 347 --------AMTLPS-------------------ESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSK- 397 (565)
T ss_pred --------cCCCCC-------------------Ccccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEeccc-
Confidence 000000 01111112334444444444 45555555443221 133444444
Q ss_pred CCccccccccCCccCcEEE-eeccCCcccccccccccCCcCCccEEeccCCCCCccccccCcccccccceeeccCCCCcc
Q 000559 1035 QSLMLIARRQLPSSLTKVE-IRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQTCPKLKS 1113 (1422)
Q Consensus 1035 ~~l~~i~~~~~~~~L~~L~-l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~~~~L~~ 1113 (1422)
+.+..+|..- +. ++.+. ...+++ ...+..+.....+++|..|++++|. |..
T Consensus 398 NqL~elPk~L-~~-lkelvT~l~lsn-n~isfv~~~l~~l~kLt~L~L~NN~-------------------------Ln~ 449 (565)
T KOG0472|consen 398 NQLCELPKRL-VE-LKELVTDLVLSN-NKISFVPLELSQLQKLTFLDLSNNL-------------------------LND 449 (565)
T ss_pred chHhhhhhhh-HH-HHHHHHHHHhhc-CccccchHHHHhhhcceeeecccch-------------------------hhh
Confidence 3333333210 00 00000 000000 0000111112224445555555533 222
Q ss_pred CCcccCCcccccceEEEecccccccccCCCCCCCccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccC
Q 000559 1114 LSSSEGQLPVAIKHLEVQNCAELTTLSSTGKLPEALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHK 1193 (1422)
Q Consensus 1114 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 1193 (1422)
+|. .+.....||.|+++.|+ ...+|..+..+..++.+..++|.+...-|+.+++
T Consensus 450 LP~-------------------------e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 450 LPE-------------------------EMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cch-------------------------hhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 221 11111358889999885 6667877777777777777777777777777888
Q ss_pred CcccceEeccCCCCCcccCCCCCCCCCCcEEEEecCCCC
Q 000559 1194 LVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRCEEL 1232 (1422)
Q Consensus 1194 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~l 1232 (1422)
+.+|..|++.+| .+..+|+.++++++|++|++++|++.
T Consensus 504 m~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCC-chhhCChhhccccceeEEEecCCccC
Confidence 999999999887 56678888888888999998888865
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=2.9e-25 Score=243.18 Aligned_cols=302 Identities=16% Similarity=0.169 Sum_probs=208.3
Q ss_pred cccccccceEEecccCCccchhhhccc--cCCceEEEccCcCccccchHhhhccCccceEEecCCCCccccccccCCccC
Q 000559 972 LHSVASLRKLFVANCQSLVSFLEACFL--SNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIARRQLPSSL 1049 (1422)
Q Consensus 972 ~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~L 1049 (1422)
++.++.|+.||||.| .+..++...++ .++++|+|++| .++.+..+.|.++.+|-.|.|+. +.++.+|..
T Consensus 145 L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r------ 215 (873)
T KOG4194|consen 145 LSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSR-NRITTLPQR------ 215 (873)
T ss_pred HHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeeccc-CcccccCHH------
Confidence 445566666666665 34444444442 45666666666 46666666666666666666666 455555544
Q ss_pred cEEEeeccCCcccccccccccCCcCCccEEeccCCCCCccccccCcccccccceeeccCCCCccCCcccCCcccccceEE
Q 000559 1050 TKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQTCPKLKSLSSSEGQLPVAIKHLE 1129 (1422)
Q Consensus 1050 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~L~~L~ 1129 (1422)
.|..+++|+.|+|..|.. .-.+.+.+.+++.|+.+....+.+ ..|+.--
T Consensus 216 -------------------~Fk~L~~L~~LdLnrN~i-----------rive~ltFqgL~Sl~nlklqrN~I-~kL~DG~ 264 (873)
T KOG4194|consen 216 -------------------SFKRLPKLESLDLNRNRI-----------RIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGA 264 (873)
T ss_pred -------------------Hhhhcchhhhhhccccce-----------eeehhhhhcCchhhhhhhhhhcCc-ccccCcc
Confidence 344455666666666541 112223333333333333222222 1222222
Q ss_pred EecccccccccCCCCCCCccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCCc
Q 000559 1130 VQNCAELTTLSSTGKLPEALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLV 1209 (1422)
Q Consensus 1130 l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 1209 (1422)
+.+| ..+++|+|..|+....-..++.+++.|+.|++++|.+...-++++..+++|++|+|++|....
T Consensus 265 Fy~l-------------~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 265 FYGL-------------EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred eeee-------------cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 2222 468889999998777778889999999999999999999999999999999999999997666
Q ss_pred ccCCCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeecccccCCCCCCccccccccccccCcccccccCcCCCcceE
Q 000559 1210 SFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRKL 1289 (1422)
Q Consensus 1210 ~~~~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L 1289 (1422)
.-+..|..+..|+.|+|++|.+...-..+|..+++|++|||++|.....+-. ....+..+++|+.|
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED--------------aa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED--------------AAVAFNGLPSLRKL 397 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec--------------chhhhccchhhhhe
Confidence 6666777889999999999987666667899999999999999944333221 01136678999999
Q ss_pred EecCCCCCcccccccccccCCccccceeccccccccCCCcCCCCCCCcccceeccC
Q 000559 1290 EIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISE 1345 (1422)
Q Consensus 1290 ~L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 1345 (1422)
++-+ ++++++|.. +|..+.+|++|+|.+| -+.++.+.+|..+ .|+.|.+..
T Consensus 398 ~l~g-Nqlk~I~kr--Afsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 398 RLTG-NQLKSIPKR--AFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eecC-ceeeecchh--hhccCcccceecCCCC-cceeecccccccc-hhhhhhhcc
Confidence 9988 567888875 6778899999999984 5667766889888 888888765
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1e-26 Score=269.34 Aligned_cols=176 Identities=21% Similarity=0.205 Sum_probs=108.0
Q ss_pred CcCCccEEeccCCCCCccccccCcc--cccccceeeccCCCCccCCcccCCcccccceEEEecccccccccCCCCCCCcc
Q 000559 1072 SLSLLESLDISGCQSLMCLSRRGRL--STVLRRLKIQTCPKLKSLSSSEGQLPVAIKHLEVQNCAELTTLSSTGKLPEAL 1149 (1422)
Q Consensus 1072 ~l~~L~~L~L~~~~~l~~l~~~~~~--~~~L~~L~l~~~~~L~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L 1149 (1422)
.+++|++|+|..|. +..+|..... ..++..+..+ +..+..++.......+.|+.|.+.++.--....+...-...|
T Consensus 308 ~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 35668888888865 4444442211 1123333333 245555554444444666777666654322222222222468
Q ss_pred ceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCCcccCCCCCCCCCCcEEEEecC
Q 000559 1150 QYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRC 1229 (1422)
Q Consensus 1150 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 1229 (1422)
+.|+|++|+........+.++..|+.|+|++|.+ +.+|..+.+++.|++|...+| .+..+| ++..+++|+.+|++.|
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN-~l~~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSN-QLLSFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCC-ceeech-hhhhcCcceEEecccc
Confidence 8888888875544456677888888888888654 455677777888888888777 556677 6777788888888877
Q ss_pred CCCCc-CccccCCCCccceeecccc
Q 000559 1230 EELRP-LPSGVERLNSLQELDISLC 1253 (1422)
Q Consensus 1230 ~~l~~-~p~~~~~l~~L~~L~ls~n 1253 (1422)
++... +|..... ++|++||+++|
T Consensus 463 ~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 463 NLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hhhhhhhhhhCCC-cccceeeccCC
Confidence 76543 3433333 78888888887
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.6e-26 Score=241.99 Aligned_cols=448 Identities=20% Similarity=0.224 Sum_probs=246.2
Q ss_pred cccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeecCCCcccccccccccccccc
Q 000559 586 SIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISGQNLITEMPVGMNKLKCLL 665 (1422)
Q Consensus 586 ~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 665 (1422)
.+..-..|..|.+++|.++.+-+.+.+|..|.+|++++| .+..+|.+|+.+.++..|+.++|+ +..+|+.++.+.+|.
T Consensus 40 ~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLV 117 (565)
T ss_pred hhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhh
Confidence 344557789999999999999888999999999999996 788899999999999999999998 889999999999999
Q ss_pred ccceeEeccCC-CCChhcccccccCCceeEEeCccccccccccccCCCCCccCcEEEEEeccccCCCcccCCcchHHHhc
Q 000559 666 TLSNFVVGLNT-GSGLEDLKSLKFLRGKLCISKLRNVVQDITEPILSDKEDLEVLQLEWESLYLHESSECSRVPDINVLD 744 (1422)
Q Consensus 666 ~L~~~~~~~~~-~~~i~~l~~L~~L~~~l~i~~l~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~l~ 744 (1422)
.|+...+.... +..++++-.+..+ +...|.+.. .+ +
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl------------------------------~~~~N~i~s--------lp-----~ 154 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDL------------------------------DATNNQISS--------LP-----E 154 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhh------------------------------hcccccccc--------Cc-----h
Confidence 88877665443 3344444333333 222222210 00 0
Q ss_pred ccCCCCCccEEEEEeECCCCCCCCCCCCCCCcccEEEEeCCCCCCcCCCCCCCCCcchhhhcCCcceeEecccccCCCCC
Q 000559 745 RLRPHGNLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCLPALGALPSLKELTIKGLRELITIGSEIYGDDCL 824 (1422)
Q Consensus 745 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~ 824 (1422)
.+..+..|..+.+.++....+|...-. ++.|++|+...|.+....|.+|.+.+|..|++.+|. +..+| +|.|
T Consensus 155 ~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-ef~g---- 226 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLP-EFPG---- 226 (565)
T ss_pred HHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCC-CCCc----
Confidence 111122344455555555555554433 566666666555443333356666666666666553 22222 2211
Q ss_pred CCCCccceeecccCCccccccccCCCCccccCcccceeecccCccccccCCCCCCCccEEEEeCCCCccccCCCCCcceE
Q 000559 825 KPFQSLETLCFQNLGVWSHWDPIGEDGQVEKFPVLRKLSILNCPRLSERLPDHLPSLEELEVRGCEKLVVSLSGLPLLCK 904 (1422)
Q Consensus 825 ~~f~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~ 904 (1422)
+..|+++.+.. +.++ .+|.. ...+++++..
T Consensus 227 -------------------------------cs~L~Elh~g~-N~i~-~lpae-----------------~~~~L~~l~v 256 (565)
T KOG0472|consen 227 -------------------------------CSLLKELHVGE-NQIE-MLPAE-----------------HLKHLNSLLV 256 (565)
T ss_pred -------------------------------cHHHHHHHhcc-cHHH-hhHHH-----------------Hhccccccee
Confidence 33444444444 3443 33320 1123444444
Q ss_pred EEeccCCCccccccccccccccccccccccccccccccccceEEEEecCcchhhhhhhhhhcccccccccccccceEEec
Q 000559 905 LELSSCKRMVCRSIDSQSIKHATLSNVSEFSRLSRHNFQKVECLKIIGCEELEHLWNEICLEELPHGLHSVASLRKLFVA 984 (1422)
Q Consensus 905 L~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~lp~~~~~l~~L~~L~l~ 984 (1422)
||+..|+. .++|+.+.-+.+|.+||+|
T Consensus 257 LDLRdNkl-----------------------------------------------------ke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 257 LDLRDNKL-----------------------------------------------------KEVPDEICLLRSLERLDLS 283 (565)
T ss_pred eecccccc-----------------------------------------------------ccCchHHHHhhhhhhhccc
Confidence 55544442 3455556666667777777
Q ss_pred ccCCccchhh-hccccCCceEEEccCcCccccchHhhhccC--ccceEEecCCCCccccccccCCccCcEEEeeccCCcc
Q 000559 985 NCQSLVSFLE-ACFLSNLSELVIQNCSALISLNEVTKHNYL--HLKSLQIEGCQSLMLIARRQLPSSLTKVEIRNCENLQ 1061 (1422)
Q Consensus 985 ~~~~l~~~~~-~~~~~~L~~L~L~~~~~l~~~~~~~~~~l~--~L~~L~L~~c~~l~~i~~~~~~~~L~~L~l~~~~~l~ 1061 (1422)
+|. +..+|. .+.+ .|+.|.+.+|+ +..+...+...-+ -|++|+=. ..|.++.
T Consensus 284 NN~-is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~----------------------~~~dglS 338 (565)
T KOG0472|consen 284 NND-ISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSK----------------------IKDDGLS 338 (565)
T ss_pred CCc-cccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHh----------------------hccCCCC
Confidence 663 333332 2223 55555555553 3333222211100 01111100 0000000
Q ss_pred cccccccccCCcCCccEEeccCCCCCccccccCcccccccceeeccCCCCccCCcccCCcccccceEEEecccccccccC
Q 000559 1062 LTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQTCPKLKSLSSSEGQLPVAIKHLEVQNCAELTTLSS 1141 (1422)
Q Consensus 1062 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~ 1141 (1422)
.......+.. +... ... .......+.+.|++++ .+++.+|.....
T Consensus 339 ~se~~~e~~~--------t~~~----~~~-~~~~~~i~tkiL~~s~-~qlt~VPdEVfe--------------------- 383 (565)
T KOG0472|consen 339 QSEGGTETAM--------TLPS----ESF-PDIYAIITTKILDVSD-KQLTLVPDEVFE--------------------- 383 (565)
T ss_pred CCcccccccC--------CCCC----Ccc-cchhhhhhhhhhcccc-cccccCCHHHHH---------------------
Confidence 0000000000 0000 000 0000111222222222 222222211000
Q ss_pred CCCCCCccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCCcccCCCCCCCCCC
Q 000559 1142 TGKLPEALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNL 1221 (1422)
Q Consensus 1142 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L 1221 (1422)
.+ -..-....+++.|. +..+|..+..+..+.+.-+.+++..+.+|..++.+++|..|++++| .+.++|.+++.+..|
T Consensus 384 a~-~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~L 460 (565)
T KOG0472|consen 384 AA-KSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRL 460 (565)
T ss_pred Hh-hhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhh
Confidence 00 00125677888887 6677888888888888888888888888888888888989998887 677788888877778
Q ss_pred cEEEEecCCCCCcCccccCCCCccceeecccc
Q 000559 1222 RVIEISRCEELRPLPSGVERLNSLQELDISLC 1253 (1422)
Q Consensus 1222 ~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n 1253 (1422)
+.|+++.|. ...+|.....+..|+.+-.+.|
T Consensus 461 q~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 461 QTLNLSFNR-FRMLPECLYELQTLETLLASNN 491 (565)
T ss_pred heecccccc-cccchHHHhhHHHHHHHHhccc
Confidence 888888773 5566665555555555544444
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=2.3e-24 Score=250.03 Aligned_cols=104 Identities=35% Similarity=0.481 Sum_probs=94.5
Q ss_pred CCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeec
Q 000559 567 FKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDIS 646 (1422)
Q Consensus 567 ~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 646 (1422)
.-+|++||+++|.+..+|..|..+.+|+.|+++.|.|...|.+.+++.+|++|+|.+ +.+..+|.++..+++|++|+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccc
Confidence 334999999999999999999999999999999999999999999999999999997 5899999999999999999999
Q ss_pred CCCccccccccccccccccccceeEe
Q 000559 647 GQNLITEMPVGMNKLKCLLTLSNFVV 672 (1422)
Q Consensus 647 ~~~~~~~~p~~i~~L~~L~~L~~~~~ 672 (1422)
.|. .+.+|.-+..++.+..+...+|
T Consensus 123 ~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 123 FNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 998 7888988888888877765544
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=6.4e-22 Score=262.37 Aligned_cols=323 Identities=24% Similarity=0.386 Sum_probs=166.8
Q ss_pred ccccccccc-ccceEEecccCCccchhhhccccCCceEEEccCcCccccchHhhhccCccceEEecCCCCccccccccCC
Q 000559 968 LPHGLHSVA-SLRKLFVANCQSLVSFLEACFLSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIARRQLP 1046 (1422)
Q Consensus 968 lp~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~ 1046 (1422)
+|.++..++ +|+.|.+.+++ +..+|....+.+|+.|++.+| .+..++... ..+++|+.|++++|..+..+|.....
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l 656 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGS-KLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMA 656 (1153)
T ss_pred cCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCc-ccccccccc-ccCCCCCEEECCCCCCcCcCCccccC
Confidence 344444442 46666666653 344444444566777777766 455555443 35677777777776666555543333
Q ss_pred ccCcEEEeeccCCcccccccccccCCcCCccEEeccCCCCCccccccCcccccccceeeccCCCCccCCcccCCcccccc
Q 000559 1047 SSLTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQTCPKLKSLSSSEGQLPVAIK 1126 (1422)
Q Consensus 1047 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~L~ 1126 (1422)
++|+.|.+.+|..+...+. .+..+++|+.|++++|..++.+|... .+++|+.|.+++|..++.++.
T Consensus 657 ~~Le~L~L~~c~~L~~lp~---si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---------- 722 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPS---SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---------- 722 (1153)
T ss_pred CcccEEEecCCCCccccch---hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----------
Confidence 3344444444433332221 22334556666666666665555433 345555555555555544431
Q ss_pred eEEEecccccccccCCCCCCCccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccc-------cccccccCCcccce
Q 000559 1127 HLEVQNCAELTTLSSTGKLPEALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQ-------SVPNALHKLVSLDQ 1199 (1422)
Q Consensus 1127 ~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~ 1199 (1422)
.+.+|++|++++|. ...+|..+ .+++|..|.+.++.... ..+......++|+.
T Consensus 723 ------------------~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 723 ------------------ISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred ------------------ccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchh
Confidence 12344555555444 22333322 23444444444322110 11111223456677
Q ss_pred EeccCCCCCcccCCCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeecccccCCCCCCccccccccccccCcccccc
Q 000559 1200 MYIGNCPSLVSFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWG 1279 (1422)
Q Consensus 1200 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~ 1279 (1422)
|++++|+....+|..+..+++|+.|++++|..++.+|... ++++|+.|++++|.....+|.
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~------------------ 843 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD------------------ 843 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc------------------
Confidence 7777776666666666666677777777766666666554 566777777776644443332
Q ss_pred cCcCCCcceEEecCCCCCcccccccccccCCccccceeccccccccCCCcCCCCCCCcccceeccCCCCCCCCC
Q 000559 1280 LHKLTSLRKLEIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKSFP 1353 (1422)
Q Consensus 1280 l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 1353 (1422)
..++|++|+|++| .++.+|. .+..+++|+.|++++|+.++.++ ..+..+++|+.|++++|+.|+.++
T Consensus 844 --~~~nL~~L~Ls~n-~i~~iP~---si~~l~~L~~L~L~~C~~L~~l~-~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 844 --ISTNISDLNLSRT-GIEEVPW---WIEKFSNLSFLDMNGCNNLQRVS-LNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred --cccccCEeECCCC-CCccChH---HHhcCCCCCEEECCCCCCcCccC-cccccccCCCeeecCCCccccccc
Confidence 1134555555543 3344444 33444555555555555555555 234455555555555555555444
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5.5e-24 Score=234.08 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=124.1
Q ss_pred CCCcccEEEecccccC--ccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeE
Q 000559 566 KFKKLRVLSLRNYYIT--EVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYF 643 (1422)
Q Consensus 566 ~~~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 643 (1422)
.++..|-.|+++|.++ .+|.+...++.+++|.|..+.+..+|+.++.|.+|++|.+++| .+..+-..++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3556777888888876 5688888888899999988888888888888999999988886 566666778888888888
Q ss_pred eecCCCcc-ccccccccccccccccceeEeccCCCCChhcccccccCCceeEEeCccccccccccccCCCCCccCcEEEE
Q 000559 644 DISGQNLI-TEMPVGMNKLKCLLTLSNFVVGLNTGSGLEDLKSLKFLRGKLCISKLRNVVQDITEPILSDKEDLEVLQLE 722 (1422)
Q Consensus 644 ~l~~~~~~-~~~p~~i~~L~~L~~L~~~~~~~~~~~~i~~l~~L~~L~~~l~i~~l~~~~~~~~~~~l~~~~~L~~L~l~ 722 (1422)
.+.+|++. ..+|..|.+|..|..|+++.|.... .|..+...+++-.|+|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-----------------------------vP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-----------------------------VPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhh-----------------------------cchhhhhhcCcEEEEcc
Confidence 88888743 4678888888888877776654321 11112222333344444
Q ss_pred EeccccCCCcccCCcchHHHhcccCCCCCccEEEEEeECCCCCCCCCCCCCCCcccEEEEeCCCCCCcCCCCCCCCCcch
Q 000559 723 WESLYLHESSECSRVPDINVLDRLRPHGNLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCLPALGALPSLKE 802 (1422)
Q Consensus 723 ~n~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 802 (1422)
+|.+..+|..++- ++..|-.|+|++|.+....|.+..+..|++
T Consensus 135 ------------------------------------~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 135 ------------------------------------YNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred ------------------------------------cCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 4444455554432 366677788888876555556777788888
Q ss_pred hhhcCCc
Q 000559 803 LTIKGLR 809 (1422)
Q Consensus 803 L~l~~~~ 809 (1422)
|.|++|+
T Consensus 178 L~Ls~NP 184 (1255)
T KOG0444|consen 178 LKLSNNP 184 (1255)
T ss_pred hhcCCCh
Confidence 8888775
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.7e-22 Score=222.46 Aligned_cols=228 Identities=21% Similarity=0.285 Sum_probs=121.7
Q ss_pred hhHHHhcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccc-cCccccccccc
Q 000559 559 VLSEVLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHR-LKKLPTNVENL 637 (1422)
Q Consensus 559 ~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~-~~~lP~~i~~L 637 (1422)
.+|.....++.++.|.|....+..+|+.++.|.+|++|.+++|++.++...++.|+.|+.++++.|+. ...+|.+|..|
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 34445566666777777666677777777777777777777777666666666677777777766532 23466667777
Q ss_pred cccCeEeecCCCccccccccccccccccccceeEeccCCC--CChhcccccccCCceeEEeCccccccccccccCCCCCc
Q 000559 638 IDLLYFDISGQNLITEMPVGMNKLKCLLTLSNFVVGLNTG--SGLEDLKSLKFLRGKLCISKLRNVVQDITEPILSDKED 715 (1422)
Q Consensus 638 ~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~--~~i~~l~~L~~L~~~l~i~~l~~~~~~~~~~~l~~~~~ 715 (1422)
..|..|||++|+ +.++|.++..-+++-.|+++.|++.+. ..+.+|..|-.|. +.+..-+..|.....+.+
T Consensus 103 ~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD-------LS~NrLe~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD-------LSNNRLEMLPPQIRRLSM 174 (1255)
T ss_pred ccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc-------cccchhhhcCHHHHHHhh
Confidence 777777777776 666676666666666666666655441 1223333332221 222222333444445556
Q ss_pred cCcEEEEEeccccCCCcccCCcchHHHhcccCCCCCccEEEEEeECC--CCCCCCCCCCCCCcccEEEEeCCCCCCcCCC
Q 000559 716 LEVLQLEWESLYLHESSECSRVPDINVLDRLRPHGNLKELSINFYGG--TKFPSWVGDPSFSSMVDLRLENCEKCTCLPA 793 (1422)
Q Consensus 716 L~~L~l~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~ 793 (1422)
|+.|.|++|.+. ...+..+..+..|+.|.+++... ..+|..+.+ +.+|..++|+.|.+......
T Consensus 175 LqtL~Ls~NPL~------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~--l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 175 LQTLKLSNNPLN------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD--LHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred hhhhhcCCChhh------------HHHHhcCccchhhhhhhcccccchhhcCCCchhh--hhhhhhccccccCCCcchHH
Confidence 666666655431 11222222233333444443321 234444432 45555555555443322223
Q ss_pred CCCCCCcchhhhcCC
Q 000559 794 LGALPSLKELTIKGL 808 (1422)
Q Consensus 794 l~~l~~L~~L~l~~~ 808 (1422)
+-++++|+.|+|++|
T Consensus 241 ly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN 255 (1255)
T ss_pred HhhhhhhheeccCcC
Confidence 444555555555544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-16 Score=168.69 Aligned_cols=107 Identities=22% Similarity=0.341 Sum_probs=85.1
Q ss_pred cccEEEecccccCccC-ccccCCCCcceeeecCcccccc-CcccccCcccceeecccccccCcccc-ccccccccCeEee
Q 000559 569 KLRVLSLRNYYITEVP-NSIRLLTHLRYLNFSGTRICHI-PESVGFLSHLQILLLKDCHRLKKLPT-NVENLIDLLYFDI 645 (1422)
Q Consensus 569 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~n~i~~l-p~~~~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l 645 (1422)
.-..++|..|.|+.|| .+|+.+++||.||||+|+|+.| |..|.+|..|-.|-+.+++.++.+|. .|++|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4567888899999994 6788999999999999999888 67799999988888888778888885 4688999999888
Q ss_pred cCCCccccccc-cccccccccccceeEeccCC
Q 000559 646 SGQNLITEMPV-GMNKLKCLLTLSNFVVGLNT 676 (1422)
Q Consensus 646 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~ 676 (1422)
.-|. +..++. .+..|.+|..|.++++.+..
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhhhh
Confidence 8887 455554 47888888888777766544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1e-13 Score=169.25 Aligned_cols=155 Identities=24% Similarity=0.276 Sum_probs=93.1
Q ss_pred CccceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCCcccCCCCCCCCCCcEEEE
Q 000559 1147 EALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEI 1226 (1422)
Q Consensus 1147 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 1226 (1422)
++|++|++++|.+.. +|.. ..+|..|++++|.+. .+|.. ..+|+.|+|++|. +..+|.. ..+|+.|++
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~L 369 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWA 369 (788)
T ss_pred cccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCc-cCCCCCC---Ccccceehh
Confidence 356666666654332 2221 123445555555443 23431 2467888888774 4455643 246777788
Q ss_pred ecCCCCCcCccccCCCCccceeecccccCCCCCCccccccccccccCcccccccCcCCCcceEEecCCCCCccccccccc
Q 000559 1227 SRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALSFPEVSVR 1306 (1422)
Q Consensus 1227 ~~n~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~ 1306 (1422)
++|.+. .+|.. .++|+.|++++|.+. .+|. ..++|+.|++++|. +..+|.
T Consensus 370 s~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~--------------------l~s~L~~LdLS~N~-LssIP~---- 419 (788)
T PRK15387 370 YNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPV--------------------LPSELKELMVSGNR-LTSLPM---- 419 (788)
T ss_pred hccccc-cCccc---ccccceEEecCCccc-CCCC--------------------cccCCCEEEccCCc-CCCCCc----
Confidence 777644 45543 256778888877433 3443 12467788888865 455665
Q ss_pred ccCCccccceeccccccccCCCcCCCCCCCcccceeccCCC
Q 000559 1307 MRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECP 1347 (1422)
Q Consensus 1307 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~ 1347 (1422)
.+.+|+.|++++ |.++.+| ..+.++++|+.|+|++|+
T Consensus 420 --l~~~L~~L~Ls~-NqLt~LP-~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 --LPSGLLSLSVYR-NQLTRLP-ESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --chhhhhhhhhcc-CcccccC-hHHhhccCCCeEECCCCC
Confidence 345778888877 5577777 457778888888888864
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.6e-13 Score=167.66 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=70.1
Q ss_pred CcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeecC
Q 000559 568 KKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISG 647 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 647 (1422)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 456789999999999998886 4899999999999999863 588999999997 67778853 46889999999
Q ss_pred CCcccccccccccccccccccee
Q 000559 648 QNLITEMPVGMNKLKCLLTLSNF 670 (1422)
Q Consensus 648 ~~~~~~~p~~i~~L~~L~~L~~~ 670 (1422)
|. +..+|... ++|+.|++.
T Consensus 272 N~-L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 272 NP-LTHLPALP---SGLCKLWIF 290 (788)
T ss_pred Cc-hhhhhhch---hhcCEEECc
Confidence 98 56666533 334444443
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=3.4e-15 Score=157.87 Aligned_cols=358 Identities=15% Similarity=0.130 Sum_probs=173.4
Q ss_pred ccccc-ccccccccceEEecccCCccchhhhcc--ccCCceEEEccCcCccccchHhhhccCccceEEecCCCCcccccc
Q 000559 966 EELPH-GLHSVASLRKLFVANCQSLVSFLEACF--LSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIAR 1042 (1422)
Q Consensus 966 ~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~~l~~i~~ 1042 (1422)
..+|+ .|+.+++|++|||++| .+..+....| +.+|.+|-+.+++.+++++...|.++.+|+.|.+.- +.+..+..
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~ 157 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQ 157 (498)
T ss_pred ccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhH
Confidence 34444 5677777777777777 3444443333 566666666665577777777777777777777765 33443333
Q ss_pred ccCCccCcEEEeeccCCcccccccccccCCcCCccEEeccCCCCCccc--cccCcccccccceeeccCCCCccCCcccCC
Q 000559 1043 RQLPSSLTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCL--SRRGRLSTVLRRLKIQTCPKLKSLSSSEGQ 1120 (1422)
Q Consensus 1043 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l--~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~ 1120 (1422)
..| ..|..+.+..+..+.........+..+..++.+++..|+.+..- +...... .......++..-.
T Consensus 158 ~al-~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~-a~~~ietsgarc~--------- 226 (498)
T KOG4237|consen 158 DAL-RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL-AMNPIETSGARCV--------- 226 (498)
T ss_pred HHH-HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH-hhchhhcccceec---------
Confidence 333 23555555555555544444455566666777766665522110 0000000 0000000000000
Q ss_pred cccccceEEEecccccccccCCCCC--CCccceEEeccCCCchh-hhHhhcchhhHHHHHHhcccccccccccccCCccc
Q 000559 1121 LPVAIKHLEVQNCAELTTLSSTGKL--PEALQYLSIADCPQLES-IAESFHDNAALVFILIGNCRKLQSVPNALHKLVSL 1197 (1422)
Q Consensus 1121 ~~~~L~~L~l~~~~~l~~~~~~~~~--~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 1197 (1422)
.+-.+..-.+. ........ ..++.+--.+.|..... ....|..+++|+.|++++|.+..+-+++|.++..+
T Consensus 227 ~p~rl~~~Ri~------q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 227 SPYRLYYKRIN------QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred chHHHHHHHhc------ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 00000000000 00000000 00111111112211111 22446666677777777777666666677777777
Q ss_pred ceEeccCCCCCcccCCCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeeccccc----------------------C
Q 000559 1198 DQMYIGNCPSLVSFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCI----------------------P 1255 (1422)
Q Consensus 1198 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n~----------------------~ 1255 (1422)
++|+|..|+.-..-...|.++..|+.|+|.+|++...-|.+|..+.+|.+|++-.|. .
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 777777764443333445566667777777777666666677777777777766551 1
Q ss_pred CCCCCccccccccccccCcccc-------------cccCcCCCcceEEecCCCCCcccccccccccCCccccceeccccc
Q 000559 1256 ASGLPTNLTSLSIEDLKMPLSC-------------WGLHKLTSLRKLEIRGCPGALSFPEVSVRMRLPTTLTELNIARFP 1322 (1422)
Q Consensus 1256 ~~~lp~~L~~L~l~~~~~~~~~-------------~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~ 1322 (1422)
.-.-|..++.+.+++..+.-.. ..-..++.+.+.-=..|..++.+|.. .+..-+.|++.+ +
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-----iP~d~telyl~g-n 454 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-----IPVDVTELYLDG-N 454 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-----CCchhHHHhccc-c
Confidence 1122345666666554321100 01122334444433344455555542 445555666666 4
Q ss_pred cccCCCcCCCCCCCcccceeccCCCCCCCCC
Q 000559 1323 MLHCLSSRGFQNLTSLEYLSISECPRLKSFP 1353 (1422)
Q Consensus 1323 ~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp 1353 (1422)
.++.+|.+ .+.+| .+++++ +.+..+.
T Consensus 455 ~~~~vp~~---~~~~l-~~dls~-n~i~~Ls 480 (498)
T KOG4237|consen 455 AITSVPDE---LLRSL-LLDLSN-NRISSLS 480 (498)
T ss_pred hhcccCHH---HHhhh-hccccc-Cceehhh
Confidence 45555533 44455 566666 3444443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=4.4e-15 Score=138.01 Aligned_cols=100 Identities=29% Similarity=0.384 Sum_probs=49.3
Q ss_pred CcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeecC
Q 000559 568 KKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISG 647 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 647 (1422)
.+++.|-|++|.++.+|..|..|.+|+.|++++|+|+++|.+++.|++|++|+++-| .+..+|.+|+.++.|+.||+.+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccc
Confidence 344444555555555555555555555555555555555555555555555555542 4445555555555555555555
Q ss_pred CCccc-cccccccccccccccc
Q 000559 648 QNLIT-EMPVGMNKLKCLLTLS 668 (1422)
Q Consensus 648 ~~~~~-~~p~~i~~L~~L~~L~ 668 (1422)
|++.. .+|..|..|+.|+-|.
T Consensus 112 nnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred cccccccCCcchhHHHHHHHHH
Confidence 44221 3444444444444443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=8.8e-15 Score=136.03 Aligned_cols=129 Identities=29% Similarity=0.357 Sum_probs=111.1
Q ss_pred hHHHhcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeeccccccc-Ccccccccccc
Q 000559 560 LSEVLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRL-KKLPTNVENLI 638 (1422)
Q Consensus 560 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~-~~lP~~i~~L~ 638 (1422)
.+..+..+++|++|++++|+|+++|.+++.|++||.|++.-|.+..+|..||.++-|++|||.+|+.. ..+|..|..|+
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT 127 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHH
Confidence 34457789999999999999999999999999999999999999999999999999999999987543 56999999999
Q ss_pred ccCeEeecCCCccccccccccccccccccceeEeccCC-CCChhcccccccC
Q 000559 639 DLLYFDISGQNLITEMPVGMNKLKCLLTLSNFVVGLNT-GSGLEDLKSLKFL 689 (1422)
Q Consensus 639 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~-~~~i~~l~~L~~L 689 (1422)
.|+.|++++|. ...+|.++++|++||.|.+..+..-+ +..++.+..|++|
T Consensus 128 tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 128 TLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred HHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 99999999998 78899999999999999887776544 3444444444443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=4.3e-12 Score=156.68 Aligned_cols=83 Identities=19% Similarity=0.360 Sum_probs=67.9
Q ss_pred CcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeecC
Q 000559 568 KKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISG 647 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~ 647 (1422)
.+..+|+++++.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 457899999999999998775 589999999999999998765 58999999987 5678887654 4799999999
Q ss_pred CCccccccccc
Q 000559 648 QNLITEMPVGM 658 (1422)
Q Consensus 648 ~~~~~~~p~~i 658 (1422)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 88 55676544
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=3.5e-12 Score=157.45 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=36.1
Q ss_pred ccceEEecccCCccchhhhccccCCceEEEccCcCccccchHhhhccCccceEEecCCCCccccc
Q 000559 977 SLRKLFVANCQSLVSFLEACFLSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIA 1041 (1422)
Q Consensus 977 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~~l~~i~ 1041 (1422)
+...|+++++ .+..+|.. .+++|+.|++++| .++.+|...+ .+|+.|++++| .++.+|
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP 236 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN-QLTSIP 236 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC-ccccCC
Confidence 4566777765 44555532 3567778888777 5667776443 47778888774 455444
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=4.6e-12 Score=158.84 Aligned_cols=107 Identities=30% Similarity=0.456 Sum_probs=87.4
Q ss_pred CCCcccEEEecccc--cCccCcc-ccCCCCcceeeecCc-cccccCcccccCcccceeecccccccCccccccccccccC
Q 000559 566 KFKKLRVLSLRNYY--ITEVPNS-IRLLTHLRYLNFSGT-RICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLL 641 (1422)
Q Consensus 566 ~~~~Lr~L~L~~~~--i~~lp~~-i~~L~~L~~L~L~~n-~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~ 641 (1422)
..+.|++|-+.+|. +..++.. |..+++||+|||++| .+.++|++|+.|.+||+|++++ +.+..+|.++.+|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 34478888888886 6777544 678999999999977 6779999999999999999998 58889999999999999
Q ss_pred eEeecCCCccccccccccccccccccceeEec
Q 000559 642 YFDISGQNLITEMPVGMNKLKCLLTLSNFVVG 673 (1422)
Q Consensus 642 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 673 (1422)
+|++..+.....+|..+..|++|++|.++...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99999887666666556679999998776654
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=8.3e-09 Score=137.92 Aligned_cols=264 Identities=14% Similarity=0.203 Sum_probs=163.6
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCCCCC-------------CCChhHHHHHHHHHh
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLSSCD-------------FKDLNPVQVKLKQEV 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l 256 (1422)
|.||||++.++.++ ++.++|+++.. +.+...+...++..+...... ..+.......+-..+
T Consensus 42 G~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (903)
T PRK04841 42 GYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIEL 116 (903)
T ss_pred CCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHH
Confidence 99999999998853 23699999974 446666777777777422111 012222222333333
Q ss_pred c--cceeEEEeccCCCCCccchh-hhhccCCCCCCCcEEEEEcCChHHH--HhhCCCCceeeCC----CCChhhHHHHHH
Q 000559 257 A--GRKFLIVLDDVWSKNYGLWE-VLKSPFMAGAPGSKIIVTTRDENVA--LTLGCPGECHNLE----LLSDNDCWSVFK 327 (1422)
Q Consensus 257 ~--~k~~LlVlDdv~~~~~~~~~-~l~~~~~~~~~gs~ilvTtR~~~v~--~~~~~~~~~~~l~----~l~~~~~~~lf~ 327 (1422)
. +.+++||+||+...+..... .+...+.....+.++|||||...-. ......+....+. +|+.+|+.++|.
T Consensus 117 ~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~ 196 (903)
T PRK04841 117 ADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFD 196 (903)
T ss_pred hcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHH
Confidence 2 67999999999654322323 3333333344567899999984211 1111122445565 899999999997
Q ss_pred HhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHHhccccCCC--CCCChhHHHHHh-h
Q 000559 328 KHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDILNSNIWDLS--DDGEIPAVLQLS-Y 404 (1422)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~~~~--~~~~i~~~l~~s-y 404 (1422)
...... -..+.+.+|.+.|+|.|+++..++..++...... .... +... ....+...+.-. |
T Consensus 197 ~~~~~~----------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~ 260 (903)
T PRK04841 197 QRLSSP----------IEAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSA----RRLAGINASHLSDYLVEEVL 260 (903)
T ss_pred hccCCC----------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhh----HhhcCCCchhHHHHHHHHHH
Confidence 654211 1234568899999999999999988775442210 0011 1111 112466654444 8
Q ss_pred ccCchhhhHHhhhhccCCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHHHHHhcccccc-ccCCccccchhHH
Q 000559 405 HHLPSHLKRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRSIFQQ-VNGDVSKFVMHDL 483 (1422)
Q Consensus 405 ~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~~mH~l 483 (1422)
+.||++.+..+...|+++ .++.+..-. +... +.+...+++|.+++++.. .++....|+.|++
T Consensus 261 ~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L 323 (903)
T PRK04841 261 DNVDLETRHFLLRCSVLR---SMNDALIVR------VTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPL 323 (903)
T ss_pred hcCCHHHHHHHHHhcccc---cCCHHHHHH------HcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHH
Confidence 999999999999999996 333332221 1111 124677999999999753 3444457889999
Q ss_pred HHHHHHHhc
Q 000559 484 INDLARSVS 492 (1422)
Q Consensus 484 ~~~~~~~~~ 492 (1422)
++++.+...
T Consensus 324 ~r~~l~~~l 332 (903)
T PRK04841 324 FASFLRHRC 332 (903)
T ss_pred HHHHHHHHH
Confidence 999998765
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=2.1e-10 Score=133.02 Aligned_cols=35 Identities=23% Similarity=0.115 Sum_probs=20.8
Q ss_pred ccCCceEEEccCcCccc-----cchHhhhccCccceEEecCC
Q 000559 998 LSNLSELVIQNCSALIS-----LNEVTKHNYLHLKSLQIEGC 1034 (1422)
Q Consensus 998 ~~~L~~L~L~~~~~l~~-----~~~~~~~~l~~L~~L~L~~c 1034 (1422)
+.+|+.|++++|. ++. ++.. ....++|+.|+++++
T Consensus 22 l~~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~ 61 (319)
T cd00116 22 LLCLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLN 61 (319)
T ss_pred HhhccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEecccc
Confidence 5568888888884 322 2222 235566777777764
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.84 E-value=2.7e-07 Score=109.78 Aligned_cols=294 Identities=14% Similarity=0.066 Sum_probs=167.0
Q ss_pred CCCcccccchhHHHHHHHhcCCCC--CCCcc---cc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHH
Q 000559 160 TEPAVYGRDGDKAKVLDMVLSHDT--NNDDV---NF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAIL 232 (1422)
Q Consensus 160 ~~~~~vGr~~~~~~i~~~l~~~~~--~~~~v---~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~ 232 (1422)
.+..++||+++++++...+...-. ....+ |. |+|||++++.++++..... .-..++|++....+...++.+++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 345799999999999999854311 11222 22 9999999999998764333 33467777777777888999999
Q ss_pred HHhcCCC--CCCCChhHHHHHHHHHhc--cceeEEEeccCCCCC----ccchhhhhccCCCCCCCcE--EEEEcCChHHH
Q 000559 233 ESITLSS--CDFKDLNPVQVKLKQEVA--GRKFLIVLDDVWSKN----YGLWEVLKSPFMAGAPGSK--IIVTTRDENVA 302 (1422)
Q Consensus 233 ~~l~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~~~~~~~gs~--ilvTtR~~~v~ 302 (1422)
.++.... ....+.++....+.+.++ ++..+||+|+++.-. .+.+..+...+... .+++ +|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEECCcchh
Confidence 9997522 122345666667777765 456899999997632 12333443332221 2333 56666554433
Q ss_pred HhhC------CCCceeeCCCCChhhHHHHHHHhhhcCC--CccccccccchHHHHHHHHHHhCCCchHHHHHHHHH--h-
Q 000559 303 LTLG------CPGECHNLELLSDNDCWSVFKKHAFASR--EFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLL--R- 371 (1422)
Q Consensus 303 ~~~~------~~~~~~~l~~l~~~~~~~lf~~~a~~~~--~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l--~- 371 (1422)
.... .....+.+.+++.++..+++..++.... ....+. ..+.+++......|..+.|+.++-.+. +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~---~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDE---VLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHh---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2211 1124678999999999999988763211 111111 223333333333566777777664332 1
Q ss_pred --cC--CChHHHHHHHhccccCCCCCCChhHHHHHhhccCchhhhHHhhhhccCCC--CcccChHHHHHH--HHHhCCcC
Q 000559 372 --CK--QRDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAIFPK--DYEFEEKEVVLL--WIAEGLIP 443 (1422)
Q Consensus 372 --~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~--~~~i~~~~li~~--w~a~g~i~ 443 (1422)
+. -+.++.+.+++.. -.....-.++.||.+.|..+..++..-+ ...+...++... .+++.+-.
T Consensus 264 ~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1345555555442 1223455688999998876655443211 123455555432 22222110
Q ss_pred CCCCchhHHHHHHHHHHHHHhcccccc
Q 000559 444 QSTDYKQLEDVGVGYFRDLLSRSIFQQ 470 (1422)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~L~~~~ll~~ 470 (1422)
... -......|+.+|.+.++|..
T Consensus 335 ~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 335 EPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CcC----cHHHHHHHHHHHHhcCCeEE
Confidence 000 11334567888888888875
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=2.4e-10 Score=132.52 Aligned_cols=86 Identities=21% Similarity=0.158 Sum_probs=42.1
Q ss_pred hcCCCcccEEEecccccC-----ccCccccCCCCcceeeecCccccc-------cCcccccCcccceeecccccccCccc
Q 000559 564 LSKFKKLRVLSLRNYYIT-----EVPNSIRLLTHLRYLNFSGTRICH-------IPESVGFLSHLQILLLKDCHRLKKLP 631 (1422)
Q Consensus 564 ~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~n~i~~-------lp~~~~~L~~L~~L~L~~~~~~~~lP 631 (1422)
|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+.+|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344444555555555542 233444445555555555554432 12334455555555555554433344
Q ss_pred cccccccc---cCeEeecCCC
Q 000559 632 TNVENLID---LLYFDISGQN 649 (1422)
Q Consensus 632 ~~i~~L~~---L~~L~l~~~~ 649 (1422)
..+..+.+ |++|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc
Confidence 44444433 5555555554
No 28
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.64 E-value=3.5e-06 Score=99.15 Aligned_cols=293 Identities=13% Similarity=0.062 Sum_probs=161.8
Q ss_pred CcccccchhHHHHHHHhcCCC--CCCCcc---cc-cccHHHHHHHHhccccccc--C---CcEEEEEEcCcccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHD--TNNDDV---NF-RVGKTTLARLVYNDLAVED--F---NSRAWVCVSDDFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~--~~~~~v---~i-GvGKTtLa~~v~~~~~~~~--F---~~~~wv~~s~~~~~~~~~~~ 230 (1422)
..++||++++++|...+...- .....+ |- |+|||++|+.++++..... . -..+||++....+...++.+
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468999999999999986421 111222 22 9999999999998643110 1 24678888777777889999
Q ss_pred HHHHhcC---CCC-CCCChhHHHHHHHHHhc--cceeEEEeccCCCCC---ccchhhhhccC-CCCC--CCcEEEEEcCC
Q 000559 231 ILESITL---SSC-DFKDLNPVQVKLKQEVA--GRKFLIVLDDVWSKN---YGLWEVLKSPF-MAGA--PGSKIIVTTRD 298 (1422)
Q Consensus 231 i~~~l~~---~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~~-~~~~--~gs~ilvTtR~ 298 (1422)
|++++.. ... ...+..+....+.+.+. +++++||||+++.-. .+....+.... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 9999842 211 11233444555555553 568899999996641 11122332221 1111 22344555544
Q ss_pred hHHHHhhC------CCCceeeCCCCChhhHHHHHHHhhhcC-CCccccccccchHHHHHHHHHHhCCCc-hHHHHHHHHH
Q 000559 299 ENVALTLG------CPGECHNLELLSDNDCWSVFKKHAFAS-REFVASSRLCNSEFVRRKVVEKCKGLP-LAARTLGGLL 370 (1422)
Q Consensus 299 ~~v~~~~~------~~~~~~~l~~l~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 370 (1422)
......+. .....+.+++.+.++..+++..++-.. ....-.+ +..+.+.+++....|.| .|+.++-.+.
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~---~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDD---GVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCCh---hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 43322111 112467899999999999998887311 1111111 33344555677777877 4433332211
Q ss_pred --h---cC--CChHHHHHHHhccccCCCCCCChhHHHHHhhccCchhhhHHhhhhccCC--CCcccChHHHHHHH--HHh
Q 000559 371 --R---CK--QRDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAIFP--KDYEFEEKEVVLLW--IAE 439 (1422)
Q Consensus 371 --~---~~--~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~i~~~~li~~w--~a~ 439 (1422)
+ +. -+.++.+.+.+.. -.....-++..||.+.|..+..++..- ++..+...++...+ +++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 11 1234444443331 122344567889988886665544211 33446666666633 122
Q ss_pred CC-cCCCCCchhHHHHHHHHHHHHHhccccccc
Q 000559 440 GL-IPQSTDYKQLEDVGVGYFRDLLSRSIFQQV 471 (1422)
Q Consensus 440 g~-i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 471 (1422)
.+ +.+ ..+.....++.+|...+++...
T Consensus 323 ~~~~~~-----~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DIGVDP-----LTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hcCCCC-----CcHHHHHHHHHHHHhcCCeEEE
Confidence 11 111 1235566788888888888763
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.64 E-value=2.4e-06 Score=95.78 Aligned_cols=173 Identities=20% Similarity=0.165 Sum_probs=107.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHh-----ccceeEEEe
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEV-----AGRKFLIVL 265 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVl 265 (1422)
|+||||+|+.+++......+ .++|+. ....+..+++..++..++.+... .+.......+.+.+ .+++.++|+
T Consensus 53 G~GKTtl~~~l~~~l~~~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vlii 129 (269)
T TIGR03015 53 GAGKTTLIRNLLKRLDQERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFAAGKRALLVV 129 (269)
T ss_pred CCCHHHHHHHHHHhcCCCCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999987552222 123433 23456778899999888765322 22223333333322 578899999
Q ss_pred ccCCCCCccchhhhhccCC---CCCCCcEEEEEcCChHHHHhhCC---------CCceeeCCCCChhhHHHHHHHhhhcC
Q 000559 266 DDVWSKNYGLWEVLKSPFM---AGAPGSKIIVTTRDENVALTLGC---------PGECHNLELLSDNDCWSVFKKHAFAS 333 (1422)
Q Consensus 266 Ddv~~~~~~~~~~l~~~~~---~~~~gs~ilvTtR~~~v~~~~~~---------~~~~~~l~~l~~~~~~~lf~~~a~~~ 333 (1422)
||+|......++.+..... .......|++|.... ....+.. ....+.+++++.+|..+++...+...
T Consensus 130 De~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~ 208 (269)
T TIGR03015 130 DEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERA 208 (269)
T ss_pred ECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHc
Confidence 9998876556666553222 122233455555432 2222111 02457899999999999988776432
Q ss_pred CCccccccccchHHHHHHHHHHhCCCchHHHHHHHHH
Q 000559 334 REFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLL 370 (1422)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 370 (1422)
....... -..+..+.|++.++|.|..|..++..+
T Consensus 209 g~~~~~~---~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 209 GNRDAPV---FSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCCCCCC---cCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 2111111 234678999999999999999888776
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.58 E-value=2.6e-08 Score=99.62 Aligned_cols=105 Identities=24% Similarity=0.296 Sum_probs=27.5
Q ss_pred CCcccEEEecccccCccCcccc-CCCCcceeeecCccccccCcccccCcccceeecccccccCcccccc-ccccccCeEe
Q 000559 567 FKKLRVLSLRNYYITEVPNSIR-LLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNV-ENLIDLLYFD 644 (1422)
Q Consensus 567 ~~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i-~~L~~L~~L~ 644 (1422)
..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..+++.+ ..+++|++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence 334566666666666552 343 4566666666666666664 3556666666666664 444554444 3466666666
Q ss_pred ecCCCcccccc--ccccccccccccceeEeccC
Q 000559 645 ISGQNLITEMP--VGMNKLKCLLTLSNFVVGLN 675 (1422)
Q Consensus 645 l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~ 675 (1422)
+++|.+ ..+- ..+..+++|+.|++..|...
T Consensus 95 L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcC-CChHHhHHHHcCCCcceeeccCCccc
Confidence 666652 2221 22445555555555555443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=5.1e-08 Score=97.59 Aligned_cols=106 Identities=29% Similarity=0.362 Sum_probs=54.6
Q ss_pred CCCcccEEEecccccCccCccccCCCCcceeeecCccccccCccc-ccCcccceeecccccccCccc--cccccccccCe
Q 000559 566 KFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESV-GFLSHLQILLLKDCHRLKKLP--TNVENLIDLLY 642 (1422)
Q Consensus 566 ~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~-~~L~~L~~L~L~~~~~~~~lP--~~i~~L~~L~~ 642 (1422)
.+.+|++|||++|.|+.++ .+..+.+|++|++++|.|+++++.+ ..+++|+.|++++| .+..+- ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5789999999999999985 5889999999999999999997665 46999999999997 554443 34678999999
Q ss_pred EeecCCCccccccc----cccccccccccceeEecc
Q 000559 643 FDISGQNLITEMPV----GMNKLKCLLTLSNFVVGL 674 (1422)
Q Consensus 643 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~ 674 (1422)
|++.+|.+ ...+. -+..+++|+.||...+..
T Consensus 118 L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 118 LSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred eeccCCcc-cchhhHHHHHHHHcChhheeCCEEccH
Confidence 99999984 33332 267888888887665543
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=7.2e-09 Score=111.84 Aligned_cols=276 Identities=16% Similarity=0.264 Sum_probs=155.2
Q ss_pred ceEEEEecCcchhhhhhhhhhcccccccccccccceEEecccCCccchhh---hccccCCceEEEccCcCccccchH-hh
Q 000559 945 VECLKIIGCEELEHLWNEICLEELPHGLHSVASLRKLFVANCQSLVSFLE---ACFLSNLSELVIQNCSALISLNEV-TK 1020 (1422)
Q Consensus 945 L~~L~i~~c~~l~~l~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~L~~~~~l~~~~~~-~~ 1020 (1422)
++.|.+.+|..... ..+-....++++++.|.+.+|..++...- ..++++|+.|++..|..++...-. ..
T Consensus 140 lk~LSlrG~r~v~~-------sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 140 LKELSLRGCRAVGD-------SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccCCc-------chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 56666666654321 12222356788899999999987765433 234789999999999888775433 55
Q ss_pred hccCccceEEecCCCCccccccccCCcc---CcEEEeeccCCcccccccccccCCcCCccEEeccCCCCCcccc--ccCc
Q 000559 1021 HNYLHLKSLQIEGCQSLMLIARRQLPSS---LTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLS--RRGR 1095 (1422)
Q Consensus 1021 ~~l~~L~~L~L~~c~~l~~i~~~~~~~~---L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~--~~~~ 1095 (1422)
..+++|++|+++.|+.+..-....+..+ ++.+...+|............ ....-+..+++..|..++... ....
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~-~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAA-AYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHh-ccChHhhccchhhhccccchHHHHHhh
Confidence 6889999999999988765221111111 222222233332211111111 111113344444444433221 1111
Q ss_pred ccccccceeeccCCCCccCCcccCCcccccceEEEecccccccccC--CCCCCCccceEEeccCCCchhhh--Hhhcchh
Q 000559 1096 LSTVLRRLKIQTCPKLKSLSSSEGQLPVAIKHLEVQNCAELTTLSS--TGKLPEALQYLSIADCPQLESIA--ESFHDNA 1171 (1422)
Q Consensus 1096 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~L~~L~L~~~~~~~~~~--~~~~~l~ 1171 (1422)
.. ..++.+..++|..+++... .+.-..+|+.|.++.|..+.... .--.++.
T Consensus 292 ~c-------------------------~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 292 GC-------------------------HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred hh-------------------------hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 22 3444444455544333221 11222467777777776544331 1224566
Q ss_pred hHHHHHHhcccccc--cccccccCCcccceEeccCCCCCccc-----CCCCCCCCCCcEEEEecCCCCCcC-ccccCCCC
Q 000559 1172 ALVFILIGNCRKLQ--SVPNALHKLVSLDQMYIGNCPSLVSF-----PDERLPNQNLRVIEISRCEELRPL-PSGVERLN 1243 (1422)
Q Consensus 1172 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~~l~~~-p~~~~~l~ 1243 (1422)
.|+.+++..|.... .+-..-.+++.|++|.+++|..+++. ...-..+..|+.+.+++|+.+..- -..+..++
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 77777777765433 23333457889999999999766554 222334567899999998876652 23556778
Q ss_pred ccceeecccc
Q 000559 1244 SLQELDISLC 1253 (1422)
Q Consensus 1244 ~L~~L~ls~n 1253 (1422)
+|+.+++-.|
T Consensus 427 ~Leri~l~~~ 436 (483)
T KOG4341|consen 427 NLERIELIDC 436 (483)
T ss_pred ccceeeeech
Confidence 8888888777
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=5.5e-09 Score=112.74 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=50.6
Q ss_pred cccEEEEeCCCCCCcCC---CCCCCCCcchhhhcCCcceeEecccccCCCCCCCCCccceeecccCCccccccccCCCCc
Q 000559 776 SMVDLRLENCEKCTCLP---ALGALPSLKELTIKGLRELITIGSEIYGDDCLKPFQSLETLCFQNLGVWSHWDPIGEDGQ 852 (1422)
Q Consensus 776 ~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~ 852 (1422)
.|+.|.+.+|.-.+.-+ .....|++++|.+.+|..++...-.-.. ..++.|+.+.+..|..+..........+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla----~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA----RYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH----HhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 35566666665433322 2346788888888887644432211111 2256677777777666554332211112
Q ss_pred cccCcccceeecccCccccc
Q 000559 853 VEKFPVLRKLSILNCPRLSE 872 (1422)
Q Consensus 853 ~~~~~~L~~L~l~~c~~l~~ 872 (1422)
+|+|++|+++.|+.+++
T Consensus 215 ---C~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 215 ---CRKLKYLNLSWCPQISG 231 (483)
T ss_pred ---hhhHHHhhhccCchhhc
Confidence 77888888888877764
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=8.8e-08 Score=114.16 Aligned_cols=108 Identities=31% Similarity=0.436 Sum_probs=95.3
Q ss_pred hcCCCcccEEEecccccCccCccccCCC-CcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCe
Q 000559 564 LSKFKKLRVLSLRNYYITEVPNSIRLLT-HLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLY 642 (1422)
Q Consensus 564 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 642 (1422)
+..++.++.|++.+|.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 4455889999999999999998888885 999999999999999988999999999999996 78889988889999999
Q ss_pred EeecCCCccccccccccccccccccceeEec
Q 000559 643 FDISGQNLITEMPVGMNKLKCLLTLSNFVVG 673 (1422)
Q Consensus 643 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 673 (1422)
|++++|. +..+|..++.+..|++|....+.
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCc
Confidence 9999998 88888877777888888776663
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.49 E-value=2.9e-07 Score=101.17 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=95.2
Q ss_pred ccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHH---H------HHH
Q 000559 164 VYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILR---I------SKA 230 (1422)
Q Consensus 164 ~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~---~------~~~ 230 (1422)
|+||++++++|.+++..+.. ..+.| |+|||+|++++.+..+...+ .++|+...+...... + ...
T Consensus 1 F~gR~~el~~l~~~l~~~~~--~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPS--QHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--S--SEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcC--cEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 79999999999999876422 33333 99999999999987632223 345554444332211 1 111
Q ss_pred HHHHhc----CCCC------CCCChhHHHHHHHHHhc--cceeEEEeccCCCCC------ccchhhhhccCCC--CCCCc
Q 000559 231 ILESIT----LSSC------DFKDLNPVQVKLKQEVA--GRKFLIVLDDVWSKN------YGLWEVLKSPFMA--GAPGS 290 (1422)
Q Consensus 231 i~~~l~----~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~~~~--~~~gs 290 (1422)
+.+.+. .... ...........+.+.+. +++++||+||+.... ......+...+.. .....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 112221 1110 01112222333333443 446999999995542 0111122222222 12333
Q ss_pred EEEEEcCChHHHHh-------hCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 291 KIIVTTRDENVALT-------LGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 291 ~ilvTtR~~~v~~~-------~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
.+|++.....+... .......+.+++++.+++++++...+-.. . .- + .-.+..++|...+||.|..|
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~---~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I-KL-P---FSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------------HHHHHHHHHHHTT-HHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h-cc-c---CCHHHHHHHHHHhCCCHHHH
Confidence 45555544444433 11112448999999999999999876332 1 00 1 23445689999999999888
Q ss_pred HH
Q 000559 364 RT 365 (1422)
Q Consensus 364 ~~ 365 (1422)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 36
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.48 E-value=2.9e-06 Score=101.10 Aligned_cols=288 Identities=16% Similarity=0.203 Sum_probs=178.8
Q ss_pred HHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCc-ccHHHHHHHHHHHhcCCCCC----
Q 000559 171 KAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-FDILRISKAILESITLSSCD---- 241 (1422)
Q Consensus 171 ~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---- 241 (1422)
+.++++.|..... .+.+-| |.||||++.+.+.. ..+=..+.|.+.++. .+..++...++..++.-.+.
T Consensus 24 R~rL~~~L~~~~~-~RL~li~APAGfGKttl~aq~~~~--~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 24 RPRLLDRLRRAND-YRLILISAPAGFGKTTLLAQWREL--AADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred cHHHHHHHhcCCC-ceEEEEeCCCCCcHHHHHHHHHHh--cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 3456666655433 233333 99999999998762 223446899999874 46778888888888633221
Q ss_pred ---------CCChhHHHHHHHHHhc--cceeEEEeccCCCCCccch-hhhhccCCCCCCCcEEEEEcCChHHHH--hhCC
Q 000559 242 ---------FKDLNPVQVKLKQEVA--GRKFLIVLDDVWSKNYGLW-EVLKSPFMAGAPGSKIIVTTRDENVAL--TLGC 307 (1422)
Q Consensus 242 ---------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~-~~l~~~~~~~~~gs~ilvTtR~~~v~~--~~~~ 307 (1422)
..+...+...+...+. .++..+||||.--...... +.+...+.....+-..|||||+.--.. .+..
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 2233444444555444 4689999999744322222 233333445556789999999864221 1111
Q ss_pred CCceeeCC----CCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHH
Q 000559 308 PGECHNLE----LLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDIL 383 (1422)
Q Consensus 308 ~~~~~~l~----~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l 383 (1422)
.+..+++. .++.+|+-++|...... + --+.-++.+.+..+|-+-|+..++=.++.+.+.+.-...+
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l---~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L 250 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSL---P-------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL 250 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCC---C-------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc
Confidence 12333443 58899999999775411 1 1123468899999999999999988887443333222211
Q ss_pred hccccCCCCCCChhH-HHHHhhccCchhhhHHhhhhccCCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHHHH
Q 000559 384 NSNIWDLSDDGEIPA-VLQLSYHHLPSHLKRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDL 462 (1422)
Q Consensus 384 ~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L 462 (1422)
... ...+.+ ...=-++.||+++|..++-+|+++.= .+.|+..- +-++-|...+++|
T Consensus 251 sG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg~~ng~amLe~L 307 (894)
T COG2909 251 SGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TGEENGQAMLEEL 307 (894)
T ss_pred cch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hcCCcHHHHHHHH
Confidence 100 001111 22335688999999999999998532 12333321 1123467789999
Q ss_pred Hhcccccc-ccCCccccchhHHHHHHHHHhccc
Q 000559 463 LSRSIFQQ-VNGDVSKFVMHDLINDLARSVSGE 494 (1422)
Q Consensus 463 ~~~~ll~~-~~~~~~~~~mH~l~~~~~~~~~~~ 494 (1422)
.+++++-. -++....|+.|.+..+|.+.....
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 99999864 456677899999999998876544
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=1.2e-08 Score=114.11 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=52.2
Q ss_pred cEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeecCCCc
Q 000559 571 RVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISGQNL 650 (1422)
Q Consensus 571 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~~ 650 (1422)
...||+.|++.++|..++.+..|..|.|+.|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|.+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk- 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK- 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc-
Confidence 344555555555555555555555555555555555555555555555555553 4445555554442 4555555554
Q ss_pred cccccccccccccccccceeEec
Q 000559 651 ITEMPVGMNKLKCLLTLSNFVVG 673 (1422)
Q Consensus 651 ~~~~p~~i~~L~~L~~L~~~~~~ 673 (1422)
++.+|.+++.+..|..|+.+.|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred cccCCcccccchhHHHhhhhhhh
Confidence 45555555555555555444444
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.41 E-value=4.8e-08 Score=109.54 Aligned_cols=189 Identities=24% Similarity=0.366 Sum_probs=126.9
Q ss_pred ceEEeccCCCchhhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCCcccCCCCCCCCCCcEEEEecC
Q 000559 1150 QYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRC 1229 (1422)
Q Consensus 1150 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 1229 (1422)
...+++.|+ ...+|..++.+..|+.+.+..|.+ ..+|..+.++..|..|+|+.| .+..+|..+..+ -|+.|-+++|
T Consensus 78 ~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNR-FSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecC
Confidence 345666666 445677777778888888777544 456677778888888888887 444556665555 5778877765
Q ss_pred CCCCcCccccCCCCccceeecccccCCCCCCccccccccccccCcccccccCcCCCcceEEecCCCCCcccccccccccC
Q 000559 1230 EELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALSFPEVSVRMRL 1309 (1422)
Q Consensus 1230 ~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~ 1309 (1422)
+ ++.+|..++.+..|..||.+.| ....+|+ .+..+.+|+.|++..|+ +..+|+ +..
T Consensus 154 k-l~~lp~~ig~~~tl~~ld~s~n-ei~slps-----------------ql~~l~slr~l~vrRn~-l~~lp~---El~- 209 (722)
T KOG0532|consen 154 K-LTSLPEEIGLLPTLAHLDVSKN-EIQSLPS-----------------QLGYLTSLRDLNVRRNH-LEDLPE---ELC- 209 (722)
T ss_pred c-cccCCcccccchhHHHhhhhhh-hhhhchH-----------------HhhhHHHHHHHHHhhhh-hhhCCH---HHh-
Confidence 5 7777887888888888888887 3334444 24566777778777754 334454 222
Q ss_pred CccccceeccccccccCCCcCCCCCCCcccceeccCCCCCCCCC----CCCCCCCcCeeeccCC
Q 000559 1310 PTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKSFP----WEGLPSSLQQLYVEDC 1369 (1422)
Q Consensus 1310 l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp----~~~~~~sL~~L~i~~c 1369 (1422)
--.|..||++. |++..|| ..|.++..|++|.|.++| |++-| ..|...-.++|++..|
T Consensus 210 ~LpLi~lDfSc-Nkis~iP-v~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SLPLIRLDFSC-NKISYLP-VDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCceeeeeccc-Cceeecc-hhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 34677788775 6778888 568888888888888765 66654 2233444566666666
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.41 E-value=8.5e-07 Score=99.56 Aligned_cols=162 Identities=22% Similarity=0.397 Sum_probs=78.7
Q ss_pred CcccceEeccCCCCCcccCCCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeecccccCCCCCCccccccccccccC
Q 000559 1194 LVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKM 1273 (1422)
Q Consensus 1194 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~ 1273 (1422)
+..++.|++++| .+..+|. -+.+|+.|.+++|..+..+|..+ .++|+.|++++|.....+|..|+.|.+..+..
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~ 124 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLEIKGSAT 124 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEEeCCCCC
Confidence 345556666665 4444552 12356666666665555555433 24566666666544445555555555443211
Q ss_pred cccccccCcC-CCcceEEecCCCCCcccccccccccCCccccceeccccccccCCCcCCCCCCCcccceeccCCCCC-CC
Q 000559 1274 PLSCWGLHKL-TSLRKLEIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRL-KS 1351 (1422)
Q Consensus 1274 ~~~~~~l~~l-~~L~~L~L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l-~~ 1351 (1422)
. .+..+ ++|++|.+.+++.....+. ....+++|+.|++++|..+. +| ..+. .+|+.|.++.+... ..
T Consensus 125 ~----~L~~LPssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i~-LP-~~LP--~SLk~L~ls~n~~~sLe 193 (426)
T PRK15386 125 D----SIKNVPNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNII-LP-EKLP--ESLQSITLHIEQKTTWN 193 (426)
T ss_pred c----ccccCcchHhheecccccccccccc---ccccCCcccEEEecCCCccc-Cc-cccc--ccCcEEEeccccccccc
Confidence 1 12222 2455555543221111110 11245667777776666442 22 1232 46777776653211 12
Q ss_pred CCCCCCCCCcCeeeccCCcChh
Q 000559 1352 FPWEGLPSSLQQLYVEDCPQLG 1373 (1422)
Q Consensus 1352 lp~~~~~~sL~~L~i~~c~~L~ 1373 (1422)
++...+|+++ .|++.+|-++.
T Consensus 194 I~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 194 ISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred Cccccccccc-EechhhhcccC
Confidence 3334556666 77777775553
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.2e-07 Score=75.13 Aligned_cols=57 Identities=32% Similarity=0.469 Sum_probs=39.1
Q ss_pred CcccEEEecccccCccC-ccccCCCCcceeeecCccccccCc-ccccCcccceeecccc
Q 000559 568 KKLRVLSLRNYYITEVP-NSIRLLTHLRYLNFSGTRICHIPE-SVGFLSHLQILLLKDC 624 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~n~i~~lp~-~~~~L~~L~~L~L~~~ 624 (1422)
++|++|++++|.++.+| +.|..+++|++|++++|.++.+|+ .|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777774 456677777777777777776653 4677777777777765
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=2.9e-07 Score=114.37 Aligned_cols=100 Identities=26% Similarity=0.395 Sum_probs=88.1
Q ss_pred cccEEEecccccC-ccCccccCCCCcceeeecCcccc-ccCcccccCcccceeecccccccCccccccccccccCeEeec
Q 000559 569 KLRVLSLRNYYIT-EVPNSIRLLTHLRYLNFSGTRIC-HIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDIS 646 (1422)
Q Consensus 569 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~n~i~-~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~ 646 (1422)
.++.|+|++|.+. .+|..|+.+.+|++|+|++|.+. .+|..++.+++|++|||++|...+.+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999987 56999999999999999999998 889999999999999999998888999999999999999999
Q ss_pred CCCcccccccccccc-ccccccc
Q 000559 647 GQNLITEMPVGMNKL-KCLLTLS 668 (1422)
Q Consensus 647 ~~~~~~~~p~~i~~L-~~L~~L~ 668 (1422)
+|.+.+.+|..++.+ .++..++
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCcccccCChHHhhccccCceEE
Confidence 999888999887653 3344443
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.6e-08 Score=105.20 Aligned_cols=150 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred CCcccceEeccCCCCCcccCCCC-CCCCCCcEEEEecCCCCCc-CccccCCCCccceeeccccc------CCCCCCcccc
Q 000559 1193 KLVSLDQMYIGNCPSLVSFPDER-LPNQNLRVIEISRCEELRP-LPSGVERLNSLQELDISLCI------PASGLPTNLT 1264 (1422)
Q Consensus 1193 ~l~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~l~~-~p~~~~~l~~L~~L~ls~n~------~~~~lp~~L~ 1264 (1422)
.|++|+.|+|+.|.......... ..++.|+.|.|++|.+... +......+++|+.|++.+|. ....++..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 35555555555553322111111 1224555555555554321 22223345555555555551 1112223333
Q ss_pred ccccccccCcccc--cccCcCCCcceEEecCCCCCccc--ccc-cc-cccCCccccceecccccc--ccCCCcCCCCCCC
Q 000559 1265 SLSIEDLKMPLSC--WGLHKLTSLRKLEIRGCPGALSF--PEV-SV-RMRLPTTLTELNIARFPM--LHCLSSRGFQNLT 1336 (1422)
Q Consensus 1265 ~L~l~~~~~~~~~--~~l~~l~~L~~L~L~~~~~l~~~--p~~-~~-~~~~l~~L~~L~l~~~~~--l~~l~~~~~~~l~ 1336 (1422)
.|+++++...... ...+.++.|+-|+++.|. +.++ |+. +. ....+++|+.|++..|+- ..++. .+..++
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~--~l~~l~ 326 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN--HLRTLE 326 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccc--hhhccc
Confidence 4444333221111 124566777777776643 2222 111 00 113456777777777543 22222 344455
Q ss_pred cccceeccC
Q 000559 1337 SLEYLSISE 1345 (1422)
Q Consensus 1337 ~L~~L~l~~ 1345 (1422)
+|+.|.+..
T Consensus 327 nlk~l~~~~ 335 (505)
T KOG3207|consen 327 NLKHLRITL 335 (505)
T ss_pred hhhhhhccc
Confidence 666665443
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.32 E-value=1.6e-05 Score=91.13 Aligned_cols=269 Identities=14% Similarity=0.142 Sum_probs=141.7
Q ss_pred CcccccchhHHHHHHHhcCC---CCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSH---DTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~---~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
..|+|+++.++.+..++... ......+-+ |+||||+|+.+++..... + .++... .......+..++..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~-~---~~~~~~-~~~~~~~l~~~l~~ 99 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN-I---RITSGP-ALEKPGDLAAILTN 99 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC-e---EEEecc-cccChHHHHHHHHh
Confidence 46999999999988877532 111122222 999999999999875422 1 122211 11112223333333
Q ss_pred hcCCCC-CCCCh----hHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCCC-
Q 000559 235 ITLSSC-DFKDL----NPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCP- 308 (1422)
Q Consensus 235 l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~- 308 (1422)
+..... -.++. ....+.+...+.+.+..+|+|+..+.. .+...++ +.+-|..|||...+.......
T Consensus 100 l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~sRf 171 (328)
T PRK00080 100 LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRDRF 171 (328)
T ss_pred cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHHhc
Confidence 322110 00111 112233445555666667776654331 1111122 235566677754443322111
Q ss_pred CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHHhcccc
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDILNSNIW 388 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~ 388 (1422)
...+++++++.++..+++.+.+.... .. -..+.+..|++.|+|.|-.+..+...+ ..|..+...
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~-~~------~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--- 235 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILG-VE------IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--- 235 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcC-CC------cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC---
Confidence 25688999999999999998874321 11 223578899999999995443333322 122221110
Q ss_pred CCCCCC---ChhHHHHHhhccCchhhhHHhh-hhccCCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHH-HHH
Q 000559 389 DLSDDG---EIPAVLQLSYHHLPSHLKRCFA-YCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFR-DLL 463 (1422)
Q Consensus 389 ~~~~~~---~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~ 463 (1422)
...... .....+...|..|++..+..+. ....|+.+ .+..+.+.... . .+..++ +..++ .|+
T Consensus 236 ~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~~~~~~----~~~~e~~Li 302 (328)
T PRK00080 236 GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--EERDTI----EDVYEPYLI 302 (328)
T ss_pred CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--CCcchH----HHHhhHHHH
Confidence 111111 2334455667788888777775 66667655 45555543332 1 122233 33445 688
Q ss_pred hcccccccc
Q 000559 464 SRSIFQQVN 472 (1422)
Q Consensus 464 ~~~ll~~~~ 472 (1422)
+.+|++...
T Consensus 303 ~~~li~~~~ 311 (328)
T PRK00080 303 QQGFIQRTP 311 (328)
T ss_pred HcCCcccCC
Confidence 999997543
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5.5e-07 Score=73.71 Aligned_cols=59 Identities=31% Similarity=0.459 Sum_probs=51.1
Q ss_pred CCcceeeecCccccccCc-ccccCcccceeecccccccCccccccccccccCeEeecCCC
Q 000559 591 THLRYLNFSGTRICHIPE-SVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISGQN 649 (1422)
Q Consensus 591 ~~L~~L~L~~n~i~~lp~-~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 649 (1422)
++|++|++++|+++.+|. .|.++++|++|++++|......|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 68999999999999875444444678999999999999997
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=3.2e-07 Score=109.33 Aligned_cols=198 Identities=25% Similarity=0.324 Sum_probs=135.4
Q ss_pred cEEEecccccCccCccccCCCCcceeeecCccccccCcccccCc-ccceeecccccccCccccccccccccCeEeecCCC
Q 000559 571 RVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLS-HLQILLLKDCHRLKKLPTNVENLIDLLYFDISGQN 649 (1422)
Q Consensus 571 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~-~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~ 649 (1422)
..|++..+.+..-+..+..+..+..|++.+|.++++|...+.+. +|+.|++++| .+..+|..++.+++|+.|++++|+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 46888888886555667777999999999999999999899885 9999999995 788898889999999999999999
Q ss_pred ccccccccccccccccccceeEeccCCCCChhcccccccCCceeEEeCccccccccccccCCCCCccCcEEEEEeccccC
Q 000559 650 LITEMPVGMNKLKCLLTLSNFVVGLNTGSGLEDLKSLKFLRGKLCISKLRNVVQDITEPILSDKEDLEVLQLEWESLYLH 729 (1422)
Q Consensus 650 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~i~~l~~L~~L~~~l~i~~l~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 729 (1422)
+..+|...+.+.+|+.|++..+.+..-.... .....|+++.++.|..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-----------------------------~~~~~L~~l~~~~N~~--- 221 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISDLPPEI-----------------------------ELLSALEELDLSNNSI--- 221 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCccccCchhh-----------------------------hhhhhhhhhhhcCCcc---
Confidence 7888887778899998887776654421110 1112344444443321
Q ss_pred CCcccCCcchHHHhcccCCCCCccEEEEEeECCCCCCCCCCCCCCCcccEEEEeCCCCCCcCCCCCCCCCcchhhhcCCc
Q 000559 730 ESSECSRVPDINVLDRLRPHGNLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCLPALGALPSLKELTIKGLR 809 (1422)
Q Consensus 730 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 809 (1422)
...+..+....++..+.+.++....+|..+.. +++++.|++++|.+...- .++.+.+|+.|+++++.
T Consensus 222 ----------~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~i~~i~-~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 222 ----------IELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNS 288 (394)
T ss_pred ----------eecchhhhhcccccccccCCceeeeccchhcc--ccccceeccccccccccc-cccccCccCEEeccCcc
Confidence 01111223334444444555555544555553 666777777777655433 37777777777777765
Q ss_pred ceeEec
Q 000559 810 ELITIG 815 (1422)
Q Consensus 810 ~~~~i~ 815 (1422)
.....+
T Consensus 289 ~~~~~~ 294 (394)
T COG4886 289 LSNALP 294 (394)
T ss_pred ccccch
Confidence 544433
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.30 E-value=1.5e-05 Score=91.11 Aligned_cols=268 Identities=16% Similarity=0.118 Sum_probs=141.6
Q ss_pred CcccccchhHHHHHHHhcCCCCC---CCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTN---NDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~---~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
..|||+++.++++..++...... ...+-+ |+|||+||+.+++..... + ..+..+..... ..+...+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~-~---~~~~~~~~~~~-~~l~~~l~~ 78 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN-L---KITSGPALEKP-GDLAAILTN 78 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC-E---EEeccchhcCc-hhHHHHHHh
Confidence 36899999999998888642111 122222 999999999999875421 1 12221111111 122222333
Q ss_pred hcCCCC-CCCCh----hHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCCC-
Q 000559 235 ITLSSC-DFKDL----NPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCP- 308 (1422)
Q Consensus 235 l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~- 308 (1422)
+..... -.++. ....+.+...+.+.+..+|+|+.... ..| ....+ +.+-|..||+...+.......
T Consensus 79 ~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~~---~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 79 LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDLP---PFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecCC---CeEEEEecCCccccCHHHHhhc
Confidence 322110 00111 12234455566666777777776443 112 11222 245566677765443322111
Q ss_pred CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHHhcccc
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDILNSNIW 388 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~~~~~ 388 (1422)
...+.+++++.++..+++.+.+... ... -..+.+..|++.|+|.|-.+..++..+ |....... .
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~-~~~------~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~-~ 214 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLL-NVE------IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRG-Q 214 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHh-CCC------cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcC-C
Confidence 2567899999999999999887432 111 224567889999999996554444322 21110000 0
Q ss_pred CCCCCC---ChhHHHHHhhccCchhhhHHhh-hhccCCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHH-HHH
Q 000559 389 DLSDDG---EIPAVLQLSYHHLPSHLKRCFA-YCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFR-DLL 463 (1422)
Q Consensus 389 ~~~~~~---~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~ 463 (1422)
.....+ .....+...|..++++.+..+. ..+.++.+ .+..+.+.... | . + ...++..++ .|+
T Consensus 215 ~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~--~----~~~~~~~~e~~Li 281 (305)
T TIGR00635 215 KIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---E--D----ADTIEDVYEPYLL 281 (305)
T ss_pred CCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---C--C----cchHHHhhhHHHH
Confidence 000111 1222245567888888777665 44666533 34444433322 1 1 1 134556677 699
Q ss_pred hccccccc
Q 000559 464 SRSIFQQV 471 (1422)
Q Consensus 464 ~~~ll~~~ 471 (1422)
+++|+...
T Consensus 282 ~~~li~~~ 289 (305)
T TIGR00635 282 QIGFLQRT 289 (305)
T ss_pred HcCCcccC
Confidence 99999753
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.6e-08 Score=101.31 Aligned_cols=60 Identities=25% Similarity=0.228 Sum_probs=34.7
Q ss_pred CccccceeccccccccCCCcCCCCCCCcccceeccCCCCCCCCC--CCCCCCCcCeeeccCC
Q 000559 1310 PTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKSFP--WEGLPSSLQQLYVEDC 1369 (1422)
Q Consensus 1310 l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~~sL~~L~i~~c 1369 (1422)
.+.|.+|||++|..++.--...|.+++.|++|.++.|..+..-- +-.-.|+|.+|++.+|
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 35555555555555544222345667778888888775442110 1122567888888887
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=3.8e-06 Score=94.46 Aligned_cols=73 Identities=25% Similarity=0.519 Sum_probs=50.3
Q ss_pred cccccccceEEecccCCccchhhhccccCCceEEEccCcCccccchHhhhccCccceEEecCCCCccccccccCCccCcE
Q 000559 972 LHSVASLRKLFVANCQSLVSFLEACFLSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQSLMLIARRQLPSSLTK 1051 (1422)
Q Consensus 972 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~L~~ 1051 (1422)
+..+.++++|++++| .+..+| .++++|++|.+++|..++.+|... .++|+.|++++|..+. .+|.+|+.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-----sLP~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-----GLPESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-----ccccccce
Confidence 344577888888888 666666 356778888888888877777532 3578888888876664 34455666
Q ss_pred EEee
Q 000559 1052 VEIR 1055 (1422)
Q Consensus 1052 L~l~ 1055 (1422)
|.+.
T Consensus 117 L~L~ 120 (426)
T PRK15386 117 LEIK 120 (426)
T ss_pred EEeC
Confidence 6643
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=1.5e-07 Score=96.72 Aligned_cols=107 Identities=24% Similarity=0.312 Sum_probs=74.8
Q ss_pred cCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEe
Q 000559 565 SKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFD 644 (1422)
Q Consensus 565 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 644 (1422)
...+.|..|||++|.|+.+.++..-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+..+-..=.+|.|.+.|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 34567778888888888887777777888888888888777744 777888888888875 4444443335677777777
Q ss_pred ecCCCccccccccccccccccccceeEeccC
Q 000559 645 ISGQNLITEMPVGMNKLKCLLTLSNFVVGLN 675 (1422)
Q Consensus 645 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 675 (1422)
|++|. +..+ +++++|-+|..|++..|.+.
T Consensus 359 La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 359 LAQNK-IETL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhhh-Hhhh-hhhHhhhhheeccccccchh
Confidence 77776 4433 45677777777776666543
No 50
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.1e-06 Score=109.22 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=76.5
Q ss_pred HHhcccccccccccccCCcccceEeccCCCCCcccCCCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeecccccCC
Q 000559 1177 LIGNCRKLQSVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPA 1256 (1422)
Q Consensus 1177 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls~n~~~ 1256 (1422)
+|++|.+.+.+|..+..+++|+.|+|++|...+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+|++|...
T Consensus 424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 44444455555666667788888888888777778877788888888888888888888888888888888888888878
Q ss_pred CCCCccccccccccccCcccccccCcCCCcceEEecCCCCCcc
Q 000559 1257 SGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALS 1299 (1422)
Q Consensus 1257 ~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~ 1299 (1422)
+.+|..+..+ +.++..+++.+|+.+..
T Consensus 504 g~iP~~l~~~----------------~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 504 GRVPAALGGR----------------LLHRASFNFTDNAGLCG 530 (623)
T ss_pred ccCChHHhhc----------------cccCceEEecCCccccC
Confidence 8887644211 23455667777655443
No 51
>PF05729 NACHT: NACHT domain
Probab=98.22 E-value=4.8e-06 Score=85.67 Aligned_cols=133 Identities=22% Similarity=0.254 Sum_probs=80.8
Q ss_pred cccHHHHHHHHhccccccc-----CCcEEEEEEcCcccHH---HHHHHHHHHhcCCCCCCCChhHHHHHHHHH-hcccee
Q 000559 191 RVGKTTLARLVYNDLAVED-----FNSRAWVCVSDDFDIL---RISKAILESITLSSCDFKDLNPVQVKLKQE-VAGRKF 261 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~ 261 (1422)
|+||||+++.++.+..... +...+|+......... .+...+..+..... ..... .+... -+.+++
T Consensus 10 G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~~~~~~~~~~ 83 (166)
T PF05729_consen 10 GSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQELLEKNKRV 83 (166)
T ss_pred CCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHHHHHHcCCce
Confidence 9999999999987765433 3456677766544322 34444444433211 11111 11122 257899
Q ss_pred EEEeccCCCCCcc--c-----hhh-hhccCCC-CCCCcEEEEEcCChHHH---HhhCCCCceeeCCCCChhhHHHHHHHh
Q 000559 262 LIVLDDVWSKNYG--L-----WEV-LKSPFMA-GAPGSKIIVTTRDENVA---LTLGCPGECHNLELLSDNDCWSVFKKH 329 (1422)
Q Consensus 262 LlVlDdv~~~~~~--~-----~~~-l~~~~~~-~~~gs~ilvTtR~~~v~---~~~~~~~~~~~l~~l~~~~~~~lf~~~ 329 (1422)
++|+|++++.... . +.. +...+.. ..++.+++||+|..... ...... ..++++++++++..+++.++
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA-QILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC-cEEEECCCCHHHHHHHHHHH
Confidence 9999999664321 1 222 2222222 24689999999987773 223333 67999999999999999776
Q ss_pred h
Q 000559 330 A 330 (1422)
Q Consensus 330 a 330 (1422)
.
T Consensus 163 f 163 (166)
T PF05729_consen 163 F 163 (166)
T ss_pred h
Confidence 4
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=4.8e-07 Score=93.06 Aligned_cols=112 Identities=27% Similarity=0.338 Sum_probs=94.3
Q ss_pred hHHHhcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccc
Q 000559 560 LSEVLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLID 639 (1422)
Q Consensus 560 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~ 639 (1422)
+..+..-.+.+|+|++++|.|..+.. +..|.+|..||||+|.++++-..-.+|.|.++|.|++| .+..+. ++.+|.+
T Consensus 299 iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS-GL~KLYS 375 (490)
T KOG1259|consen 299 IDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLS-GLRKLYS 375 (490)
T ss_pred hhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhh-hhHhhhh
Confidence 44556678899999999999998844 88999999999999999999887889999999999996 666664 6889999
Q ss_pred cCeEeecCCCcccccc--ccccccccccccceeEeccC
Q 000559 640 LLYFDISGQNLITEMP--VGMNKLKCLLTLSNFVVGLN 675 (1422)
Q Consensus 640 L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~ 675 (1422)
|.+||+++|+ +..+- .+||+|+.|+++.+..|...
T Consensus 376 LvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 376 LVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred heeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999999998 44433 46999999999987776654
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.3e-07 Score=101.14 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCccEEEEEeECCCCCCC--CCCCCCCCcccEEEEeCCCCCCcCC---CCCCCCCcchhhhcCCcce
Q 000559 749 HGNLKELSINFYGGTKFPS--WVGDPSFSSMVDLRLENCEKCTCLP---ALGALPSLKELTIKGLREL 811 (1422)
Q Consensus 749 ~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~l~~~~~~ 811 (1422)
+.+|++..+.++.....+. ... .+++++.|+|+.|-+...-| ....||+|+.|+|+.|...
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k--~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~ 185 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSK--ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS 185 (505)
T ss_pred HHhhhheeecCccccccchhhhhh--hCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc
Confidence 3445555555555443332 222 37788888888876655433 3567788888888877543
No 54
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.15 E-value=0.00023 Score=85.99 Aligned_cols=291 Identities=13% Similarity=0.076 Sum_probs=151.6
Q ss_pred CcccccchhHHHHHHHhcCCC---CCCCcc---cc-cccHHHHHHHHhccccc----ccCC--cEEEEEEcCcccHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHD---TNNDDV---NF-RVGKTTLARLVYNDLAV----EDFN--SRAWVCVSDDFDILRIS 228 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~---~~~~~v---~i-GvGKTtLa~~v~~~~~~----~~F~--~~~wv~~s~~~~~~~~~ 228 (1422)
..+.||++++++|...|...- ....++ |. |.|||++++.|.+.... .... .+++|++..-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 468899999999998886532 222222 33 99999999999875421 1122 36788877767788888
Q ss_pred HHHHHHhcCCCC-CCCChhHHHHHHHHHhc---cceeEEEeccCCCCCccchhhhhccCC-CCCCCcEEEE--EcCC---
Q 000559 229 KAILESITLSSC-DFKDLNPVQVKLKQEVA---GRKFLIVLDDVWSKNYGLWEVLKSPFM-AGAPGSKIIV--TTRD--- 298 (1422)
Q Consensus 229 ~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~~~-~~~~gs~ilv--TtR~--- 298 (1422)
..|++++..... ......+....+...+. +...+||||+|+.-....-+.+...+. ....+++|+| .|..
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 899988854322 12222333444444432 224589999995432111111221111 1124556655 3322
Q ss_pred -----hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcC
Q 000559 299 -----ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCK 373 (1422)
Q Consensus 299 -----~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~ 373 (1422)
..+...++. ..+..++.+.++-.+++..++-.......+. .++-+|+.++..-|..-.||.++-.+...+
T Consensus 915 perLdPRLRSRLg~--eeIvF~PYTaEQL~dILk~RAe~A~gVLdDd---AIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 915 PERLIPRCRSRLAF--GRLVFSPYKGDEIEKIIKERLENCKEIIDHT---AIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred chhhhhhhhhcccc--ccccCCCCCHHHHHHHHHHHHHhCCCCCCHH---HHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 122222222 3356799999999999999885322111221 344455555555566666666655444321
Q ss_pred C----ChHHHHHHHhccccCCCCCCChhHHHHHhhccCchhhhHHhhhhccCCC---CcccChHHHHHHH--HHh--C-C
Q 000559 374 Q----RDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAIFPK---DYEFEEKEVVLLW--IAE--G-L 441 (1422)
Q Consensus 374 ~----~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~---~~~i~~~~li~~w--~a~--g-~ 441 (1422)
. ..++-+.+.... ....+.-....||.+.|..++.+..--+ ...++...+.... +++ | .
T Consensus 990 egskVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~ 1060 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKY 1060 (1164)
T ss_pred CCCccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhh
Confidence 1 122222222211 0112333456788887765443322111 2235555444433 233 1 1
Q ss_pred cCCCCCchhHHHHHHHHHHHHHhcccccc
Q 000559 442 IPQSTDYKQLEDVGVGYFRDLLSRSIFQQ 470 (1422)
Q Consensus 442 i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 470 (1422)
+... ..-+ ...+++.+|...++|..
T Consensus 1061 iGv~---plTq-RV~d~L~eL~~LGIIl~ 1085 (1164)
T PTZ00112 1061 IGMC---SNNE-LFKIMLDKLVKMGILLI 1085 (1164)
T ss_pred cCCC---CcHH-HHHHHHHHHHhcCeEEe
Confidence 1111 1111 56667788887777765
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=4.4e-06 Score=62.03 Aligned_cols=40 Identities=38% Similarity=0.515 Sum_probs=25.5
Q ss_pred CcccEEEecccccCccCccccCCCCcceeeecCccccccC
Q 000559 568 KKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIP 607 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp 607 (1422)
++|++|++++|.|+++|..|++|++|++|++++|+|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3566777777777766666667777777777777666554
No 56
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.03 E-value=1.1e-05 Score=88.86 Aligned_cols=281 Identities=17% Similarity=0.188 Sum_probs=176.4
Q ss_pred cccHHHHHHHHhcccccccC-CcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDF-NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
||||||++-++.. .. ..| +.+.+|....-.+...+.-.+...++..... -+.....+.....++|.++|+||..
T Consensus 24 gvgkttl~~~~a~-~~-~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~~rr~llvldnce 98 (414)
T COG3903 24 GVGKTTLALQAAH-AA-SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIGDRRALLVLDNCE 98 (414)
T ss_pred ccceehhhhhhHh-Hh-hhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHhhhhHHHHhcCcH
Confidence 9999999999998 33 336 5666676665556666666666666654322 2233445667778899999999983
Q ss_pred CCCccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCCCCceeeCCCCChh-hHHHHHHHhhhcCC-CccccccccchHH
Q 000559 270 SKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLELLSDN-DCWSVFKKHAFASR-EFVASSRLCNSEF 347 (1422)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~l~~~-~~~~lf~~~a~~~~-~~~~~~~~~~~~~ 347 (1422)
.-. +.-..+...+..+...-.|+.|+|....... +....+..|+.- ++.++|...+.... ...-.. ....
T Consensus 99 hl~-~~~a~~i~all~~~~~~~~~atsre~~l~~g----e~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~---~~~a 170 (414)
T COG3903 99 HLL-DACAALIVALLGACPRLAILATSREAILVAG----EVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD---DNAA 170 (414)
T ss_pred HHH-HHHHHHHHHHHccchhhhhHHHhHhhhcccc----cccccCCccccCCchhHHHHHHHHHhccceeecC---CchH
Confidence 221 1111222333344456678889987644322 256778888775 79999987774322 222222 4456
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHhcCCCh-------HHHHHHHhccccCCCCCCChhHHHHHhhccCchhhhHHhhhhcc
Q 000559 348 VRRKVVEKCKGLPLAARTLGGLLRCKQRD-------AEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFAYCAI 420 (1422)
Q Consensus 348 ~~~~i~~~c~glPLai~~~~~~l~~~~~~-------~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~ 420 (1422)
.+.+|.+..+|.|++|..+++..+.-... +.|...-.-............+.+.+||.-|..-.+.-|..++.
T Consensus 171 ~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~ 250 (414)
T COG3903 171 AVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLAV 250 (414)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchhh
Confidence 77999999999999999999988765432 22222211111111112267889999999999999999999999
Q ss_pred CCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHHHHHhcccccccc-CCccccchhHHHHHHHHHhcc
Q 000559 421 FPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRSIFQQVN-GDVSKFVMHDLINDLARSVSG 493 (1422)
Q Consensus 421 fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~~~~~~~mH~l~~~~~~~~~~ 493 (1422)
|...+... ...|.+-|-.. ..........+..+++.+++...+ .....|+.-+-++.|+..+..
T Consensus 251 ~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 251 FVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred hhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 98776544 33455544221 011223344567788888886533 234556677777777766554
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.96 E-value=1.8e-06 Score=102.70 Aligned_cols=109 Identities=25% Similarity=0.313 Sum_probs=78.2
Q ss_pred hcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeE
Q 000559 564 LSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYF 643 (1422)
Q Consensus 564 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 643 (1422)
+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|+.+. .+..+..|+.|++++| .+..++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhcc-CCccchhhhcc
Confidence 66778888888888888887655778888888888888888874 3777777888888886 555554 46668888888
Q ss_pred eecCCCcccccccc-ccccccccccceeEeccCC
Q 000559 644 DISGQNLITEMPVG-MNKLKCLLTLSNFVVGLNT 676 (1422)
Q Consensus 644 ~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~ 676 (1422)
++++|. +..+... ...+.+++.+.+..+.+..
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHHhccCCchhc
Confidence 888887 4444332 4666677766665555443
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.94 E-value=4.8e-07 Score=96.04 Aligned_cols=199 Identities=21% Similarity=0.194 Sum_probs=113.8
Q ss_pred HHHhcCCCcccEEEecccccC-----ccCccccCCCCcceeeecCcc----ccccCcc-------cccCcccceeecccc
Q 000559 561 SEVLSKFKKLRVLSLRNYYIT-----EVPNSIRLLTHLRYLNFSGTR----ICHIPES-------VGFLSHLQILLLKDC 624 (1422)
Q Consensus 561 ~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~n~----i~~lp~~-------~~~L~~L~~L~L~~~ 624 (1422)
......+..++.|+|++|.+. .+-..+.+.++||.-++++-- ..++|+. +-..++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 345667889999999999986 344556777889998888631 2255543 344557888888876
Q ss_pred cccCccccc----cccccccCeEeecCCCcccccccc-ccccccccccceeEeccCCCCChhcccccccCCceeEEeCcc
Q 000559 625 HRLKKLPTN----VENLIDLLYFDISGQNLITEMPVG-MNKLKCLLTLSNFVVGLNTGSGLEDLKSLKFLRGKLCISKLR 699 (1422)
Q Consensus 625 ~~~~~lP~~----i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~i~~l~~L~~L~~~l~i~~l~ 699 (1422)
-.-..-++. +..++.|++|+|.+|. ++..... +++ .|++|. +
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~-------------------~----------- 149 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA-------------------V----------- 149 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH-------------------H-----------
Confidence 433333322 3556777777777776 3221111 111 122221 0
Q ss_pred ccccccccccCCCCCccCcEEEEEeccccCCCcccCCcchHHHhcccCCCCCccEEEEEeECCCCCCCCC-----CCCCC
Q 000559 700 NVVQDITEPILSDKEDLEVLQLEWESLYLHESSECSRVPDINVLDRLRPHGNLKELSINFYGGTKFPSWV-----GDPSF 774 (1422)
Q Consensus 700 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~-----~~~~l 774 (1422)
.......+.|+++....|.+. +......-..++.++.|+.+.+..|++. |..+ .-.++
T Consensus 150 -------~kk~~~~~~Lrv~i~~rNrle--------n~ga~~~A~~~~~~~~leevr~~qN~I~--~eG~~al~eal~~~ 212 (382)
T KOG1909|consen 150 -------NKKAASKPKLRVFICGRNRLE--------NGGATALAEAFQSHPTLEEVRLSQNGIR--PEGVTALAEALEHC 212 (382)
T ss_pred -------HhccCCCcceEEEEeeccccc--------cccHHHHHHHHHhccccceEEEeccccc--CchhHHHHHHHHhC
Confidence 011223356666666666542 1222223334555677777777766543 2111 00146
Q ss_pred CcccEEEEeCCCCCCc----CC-CCCCCCCcchhhhcCCc
Q 000559 775 SSMVDLRLENCEKCTC----LP-ALGALPSLKELTIKGLR 809 (1422)
Q Consensus 775 ~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~l~~~~ 809 (1422)
++|+.|+|.+|.+... +. .+..+++|+.|++++|.
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 7888888888876431 11 45667788888888774
No 59
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00015 Score=79.57 Aligned_cols=194 Identities=20% Similarity=0.199 Sum_probs=103.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+||||||+.++..... .|+.++-..+-.+-++++++.-. +....+++.+|++|.|..
T Consensus 58 G~GKTTlA~liA~~~~~------~f~~~sAv~~gvkdlr~i~e~a~----------------~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 58 GTGKTTLARLIAGTTNA------AFEALSAVTSGVKDLREIIEEAR----------------KNRLLGRRTILFLDEIHR 115 (436)
T ss_pred CCCHHHHHHHHHHhhCC------ceEEeccccccHHHHHHHHHHHH----------------HHHhcCCceEEEEehhhh
Confidence 99999999999986442 23333333322222233332211 222348999999999966
Q ss_pred CCccchhhhhccCCCCCCCcEEEE--EcCChHHH--HhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchH
Q 000559 271 KNYGLWEVLKSPFMAGAPGSKIIV--TTRDENVA--LTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSE 346 (1422)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~v~--~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~ 346 (1422)
-+..+-+.+. |.-.+|.-|+| ||.++.-. ...-+...++.+++|+.++-.+++.+.+.............-.+
T Consensus 116 fnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~ 192 (436)
T COG2256 116 FNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDE 192 (436)
T ss_pred cChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCH
Confidence 5444444443 44456777776 77775432 22222337899999999999999988543322211111000123
Q ss_pred HHHHHHHHHhCCCchHHHH----HHHHHhcCC--ChHHHHHHHhccccCCCCCC----ChhHHHHHhhccCch
Q 000559 347 FVRRKVVEKCKGLPLAART----LGGLLRCKQ--RDAEWQDILNSNIWDLSDDG----EIPAVLQLSYHHLPS 409 (1422)
Q Consensus 347 ~~~~~i~~~c~glPLai~~----~~~~l~~~~--~~~~w~~~l~~~~~~~~~~~----~i~~~l~~sy~~L~~ 409 (1422)
+...-+++.++|---+.-. ++..-+... ..+..++++++........+ ++..++.-|...=++
T Consensus 193 ~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 193 EALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDP 265 (436)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCc
Confidence 3556788888886543322 222221111 23555555554333333222 445555555544333
No 60
>PRK06893 DNA replication initiation factor; Validated
Probab=97.81 E-value=7.1e-05 Score=80.59 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=86.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||+.+++....+ ...+.|+++.... .... .+.+.++ +.-+||+||+|.
T Consensus 49 G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~~dlLilDDi~~ 102 (229)
T PRK06893 49 SSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQ---YFSP---------------------AVLENLE-QQDLVCLDDLQA 102 (229)
T ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhh---hhhH---------------------HHHhhcc-cCCEEEEeChhh
Confidence 999999999999875322 3346777663210 0000 1111122 234899999987
Q ss_pred CC-ccchhh-hhccCCCC-CCCcEEEE-EcCC---------hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 271 KN-YGLWEV-LKSPFMAG-APGSKIIV-TTRD---------ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 271 ~~-~~~~~~-l~~~~~~~-~~gs~ilv-TtR~---------~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
.. ...|+. +...+... ..|..+|| |++. +.+...++.. .++++++++.++.++++++.++... ..
T Consensus 103 ~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g-~~~~l~~pd~e~~~~iL~~~a~~~~-l~ 180 (229)
T PRK06893 103 VIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG-EIYQLNDLTDEQKIIVLQRNAYQRG-IE 180 (229)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC-CeeeCCCCCHHHHHHHHHHHHHHcC-CC
Confidence 42 244553 32222211 23556655 4443 4566666554 7889999999999999999886432 11
Q ss_pred ccccccchHHHHHHHHHHhCCCchHHHHHH
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGLPLAARTLG 367 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 367 (1422)
--+++..-|++.+.|-.-++..+-
T Consensus 181 ------l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 181 ------LSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred ------CCHHHHHHHHHhccCCHHHHHHHH
Confidence 234567788888887765554443
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=4.4e-06 Score=99.41 Aligned_cols=108 Identities=26% Similarity=0.347 Sum_probs=87.1
Q ss_pred cCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEe
Q 000559 565 SKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFD 644 (1422)
Q Consensus 565 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~ 644 (1422)
..+..+..+++..|.+.++-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++| .+..+. .+..++.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence 345667777788898888666688999999999999999999776899999999999996 666665 578888899999
Q ss_pred ecCCCccccccccccccccccccceeEeccCC
Q 000559 645 ISGQNLITEMPVGMNKLKCLLTLSNFVVGLNT 676 (1422)
Q Consensus 645 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~ 676 (1422)
+++|. +..+ .++..+.+|+.+++.++.+..
T Consensus 147 l~~N~-i~~~-~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 147 LSGNL-ISDI-SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eccCc-chhc-cCCccchhhhcccCCcchhhh
Confidence 99998 4444 356668888888877776554
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2e-05 Score=58.53 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=30.1
Q ss_pred CCcceeeecCccccccCcccccCcccceeecccccccCccc
Q 000559 591 THLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLP 631 (1422)
Q Consensus 591 ~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP 631 (1422)
++|++|++++|+|+.+|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4688888888888888888888888888888886 454443
No 63
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.76 E-value=0.00046 Score=88.30 Aligned_cols=306 Identities=14% Similarity=0.160 Sum_probs=164.4
Q ss_pred cccccchhHHHHHHHhcCCCCCC-Ccccc----cccHHHHHHHHhcccccc-c-CCcEEEEEEcCcc---cHHHHHHHHH
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNN-DDVNF----RVGKTTLARLVYNDLAVE-D-FNSRAWVCVSDDF---DILRISKAIL 232 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~-~~v~i----GvGKTtLa~~v~~~~~~~-~-F~~~~wv~~s~~~---~~~~~~~~i~ 232 (1422)
.++||+.+.+.+...+..-..+. .++.| |||||+|++.|....... + |-...+-....+. .....+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 36899999999999987644333 33434 999999999998765422 1 2111111122221 2334444444
Q ss_pred HHhcCCC-------------------CCC----------------------CChhHH-----HHHHHHHh-ccceeEEEe
Q 000559 233 ESITLSS-------------------CDF----------------------KDLNPV-----QVKLKQEV-AGRKFLIVL 265 (1422)
Q Consensus 233 ~~l~~~~-------------------~~~----------------------~~~~~~-----~~~l~~~l-~~k~~LlVl 265 (1422)
.++.... ... ...... ...+.... +.|+..+|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 4441110 000 000000 11122222 356999999
Q ss_pred ccCCCCCccchhhhhccCCCCC----CCcEEEE--EcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccc
Q 000559 266 DDVWSKNYGLWEVLKSPFMAGA----PGSKIIV--TTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVA 338 (1422)
Q Consensus 266 Ddv~~~~~~~~~~l~~~~~~~~----~gs~ilv--TtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~ 338 (1422)
||+.-.+....+-+......-. .-..|.. |.+.. .....-......+.+.||+..+...+..........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--- 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--- 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc---
Confidence 9994433222322221111110 0112332 33332 112222233377999999999999988776632111
Q ss_pred cccccchHHHHHHHHHHhCCCchHHHHHHHHHhcC------CChHHHHHHHhccccCCCCCCChhHHHHHhhccCchhhh
Q 000559 339 SSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCK------QRDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHLK 412 (1422)
Q Consensus 339 ~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~------~~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 412 (1422)
...+....|+++-.|.|+-+.-+-.++... .+...|..=..+. ......+.+...+..-.+.||...|
T Consensus 238 -----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 238 -----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred -----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CCchhhHHHHHHHHHHHhcCCHHHH
Confidence 334578999999999999999888888764 2223333221110 0011111344468888999999999
Q ss_pred HHhhhhccCCCCcccChHHHHHHHHHhCCcCCCCCchhHHHHHHHHHHHHHhccccccc------cCCccc--c-chhHH
Q 000559 413 RCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLEDVGVGYFRDLLSRSIFQQV------NGDVSK--F-VMHDL 483 (1422)
Q Consensus 413 ~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~------~~~~~~--~-~mH~l 483 (1422)
...-..|++...+ +.+.|...|-. ....++....+.|.. +++.+. ...... | ..||.
T Consensus 312 ~Vl~~AA~iG~~F--~l~~La~l~~~-----------~~~~~a~~l~~al~e-~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 312 EVLKAAACIGNRF--DLDTLAALAED-----------SPALEAAALLDALQE-GLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHhCccC--CHHHHHHHHhh-----------chHHHHHHHHHHhHh-hceeccccccccccccchhhHHhhHHH
Confidence 9999999996554 45555555411 223445554444443 334331 111111 2 46888
Q ss_pred HHHHHHHh
Q 000559 484 INDLARSV 491 (1422)
Q Consensus 484 ~~~~~~~~ 491 (1422)
+++.|-..
T Consensus 378 vqqaaY~~ 385 (849)
T COG3899 378 VQQAAYNL 385 (849)
T ss_pred HHHHHhcc
Confidence 88877554
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.74 E-value=2.7e-06 Score=90.54 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=73.1
Q ss_pred hhhHHHhcCCCcccEEEeccccc----CccCcc-------ccCCCCcceeeecCcccc-ccC----cccccCcccceeec
Q 000559 558 FVLSEVLSKFKKLRVLSLRNYYI----TEVPNS-------IRLLTHLRYLNFSGTRIC-HIP----ESVGFLSHLQILLL 621 (1422)
Q Consensus 558 ~~~~~~~~~~~~Lr~L~L~~~~i----~~lp~~-------i~~L~~L~~L~L~~n~i~-~lp----~~~~~L~~L~~L~L 621 (1422)
..+.+.+.+.+.||.-+++.-.. .++|+. +-..++|++||||.|.+. .-+ +-+.+.+.|++|.|
T Consensus 48 ~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L 127 (382)
T KOG1909|consen 48 RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYL 127 (382)
T ss_pred HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhh
Confidence 45667788889999999986442 345543 345669999999999775 222 33778999999999
Q ss_pred ccccccCcccc--------------ccccccccCeEeecCCCcccccc-----ccccccccccccceeEecc
Q 000559 622 KDCHRLKKLPT--------------NVENLIDLLYFDISGQNLITEMP-----VGMNKLKCLLTLSNFVVGL 674 (1422)
Q Consensus 622 ~~~~~~~~lP~--------------~i~~L~~L~~L~l~~~~~~~~~p-----~~i~~L~~L~~L~~~~~~~ 674 (1422)
.+| .++..-. -+.+-++||++....|. +..-+ ..+.....|+++.+..+++
T Consensus 128 ~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 128 NNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred hcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccc
Confidence 998 4443221 22344677777777776 33222 1244444555555544444
No 65
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.71 E-value=0.00024 Score=84.23 Aligned_cols=175 Identities=19% Similarity=0.187 Sum_probs=97.4
Q ss_pred cccccchhHHH---HHHHhcCCCCCCCc-ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 163 AVYGRDGDKAK---VLDMVLSHDTNNDD-VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 163 ~~vGr~~~~~~---i~~~l~~~~~~~~~-v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
.+||++..+.. +.+++.......-. .|- |+||||+|+.+++..... | +.++....-.+-.+++++..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-~-----~~l~a~~~~~~~ir~ii~~~-- 84 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-F-----EALSAVTSGVKDLREVIEEA-- 84 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-E-----EEEecccccHHHHHHHHHHH--
Confidence 47787776555 66666543221111 122 999999999999864311 2 22222111111112222221
Q ss_pred CCCCCCChhHHHHHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE--EcCChH--HHHhhCCCCcee
Q 000559 238 SSCDFKDLNPVQVKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV--TTRDEN--VALTLGCPGECH 312 (1422)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~--v~~~~~~~~~~~ 312 (1422)
... ..+++.+|++|+++.-.....+.+...+.. |..++| ||.+.. +.......-.++
T Consensus 85 ---------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 85 ---------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred ---------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceee
Confidence 111 145788999999987655555666554432 444544 344432 212222222678
Q ss_pred eCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHH
Q 000559 313 NLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLG 367 (1422)
Q Consensus 313 ~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 367 (1422)
.+.+++.++.++++.+.+....... .. -..+....|++.|+|-+..+.-+.
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~-i~---i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGL-VE---LDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCC-CC---CCHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999988653211100 01 234566789999999987664443
No 66
>PF13173 AAA_14: AAA domain
Probab=97.70 E-value=7.8e-05 Score=72.10 Aligned_cols=111 Identities=21% Similarity=0.138 Sum_probs=70.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+||||++++++++.. ....+++++............+ ..+.+.+....++.++++|+|..
T Consensus 12 ~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~iDEiq~ 72 (128)
T PF13173_consen 12 GVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPGKKYIFIDEIQY 72 (128)
T ss_pred CCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccCCcEEEEehhhh
Confidence 9999999999998743 2345677776554331110000 12233333444788999999966
Q ss_pred CCccchhhhhccCCCCCCCcEEEEEcCChHHHHhh-----CCCCceeeCCCCChhhH
Q 000559 271 KNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTL-----GCPGECHNLELLSDNDC 322 (1422)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~-----~~~~~~~~l~~l~~~~~ 322 (1422)
. .+|......+.+..+..+|++|+......... ......+++.||+-.|.
T Consensus 73 ~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 73 L--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred h--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 5 66877766666655678999999987766331 11124578888887763
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.00092 Score=80.82 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=105.6
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc--------------------CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED--------------------FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~--------------------F~~~~wv~~ 218 (1422)
.++||.+..++.+.+++..+...... .|- |+||||+|+.+++...... |..+++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 46899999999999998765332221 233 9999999998876543111 111222222
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV 294 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv 294 (1422)
+.. ..+++..+.+... ..++.-++|+|++.......|+.+...+.......++|+
T Consensus 96 as~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FIL 154 (830)
T PRK07003 96 ASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFIL 154 (830)
T ss_pred ccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 211 1122222222211 124455888999977666667777766655445678777
Q ss_pred EcCChH-HHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc-hHHHHH
Q 000559 295 TTRDEN-VALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP-LAARTL 366 (1422)
Q Consensus 295 TtR~~~-v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 366 (1422)
||.+.. +.......-..+.++.++.++..+.+.+.+... ... -..+..+.|++.++|.. -|+..+
T Consensus 155 aTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI~------id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 155 ATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE-RIA------FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 776643 332322222678999999999999888766321 111 22356688999998855 455543
No 68
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00066 Score=77.36 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=107.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhcccc----ccc-CCcEEEEEE-cCcccHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLA----VED-FNSRAWVCV-SDDFDILRISKAIL 232 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~----~~~-F~~~~wv~~-s~~~~~~~~~~~i~ 232 (1422)
..++|-+..++.+.+++..+.-... ..|- |+||||+|+.+++..- ... +|...|... +....+.+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 3578988889999999865433221 1233 9999999999987431 122 454445432 22222222 22333
Q ss_pred HHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHH-HhhCCCCce
Q 000559 233 ESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVA-LTLGCPGEC 311 (1422)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~-~~~~~~~~~ 311 (1422)
+.+.... ..+++-++|+|+++..+...++.+...+.....++.+|++|.+.+.. ....+.-..
T Consensus 83 ~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3332111 12445577777776666678888888887766788999888765422 222222368
Q ss_pred eeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 312 HNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 312 ~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
+++.++++++....+.+...+ ...+.++.++..++|.|..+..
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-----------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-----------CCHHHHHHHHHHcCCCHHHHHH
Confidence 899999999988777654311 1123467889999998876543
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0007 Score=78.57 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=102.4
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc-C-------------------CcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED-F-------------------NSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~-F-------------------~~~~wv~~ 218 (1422)
..++|.+..++.+.+.+..+..... ..|- |+||||+|+.+++...... . ....+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 4689999999999998876433221 1223 9999999999987643111 1 11122221
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD 298 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 298 (1422)
+....+. ..+++.+.+... -..+++-++|+|++.......++.+...+.......++|++|.+
T Consensus 96 ~~~~~v~-~ir~i~~~~~~~----------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 96 ASRTKVE-EMREILDNIYYS----------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred cccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 1111111 111111111100 01244569999999776555677776666554456677776654
Q ss_pred -hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 299 -ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 299 -~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
..+.......-..+++.+++.++..+.+.+.+..... . -.++.+..|++.++|.|-.+
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~------i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-D------TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHHcCCCHHHH
Confidence 3343333322367899999999998888776532211 0 22346678999999987543
No 70
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=9.8e-05 Score=72.22 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=76.0
Q ss_pred cccHHHHHHHHhccccccc----CCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccce-eEEEe
Q 000559 191 RVGKTTLARLVYNDLAVED----FNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRK-FLIVL 265 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVl 265 (1422)
|+|||+++++++++..... -..++|+++....+...+..+++.+++.......+..++...+.+.+...+ .+||+
T Consensus 14 G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lvi 93 (131)
T PF13401_consen 14 GSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVI 93 (131)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEE
T ss_pred CCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 9999999999998753111 235779999888899999999999999776555567777778888886554 59999
Q ss_pred ccCCCC-CccchhhhhccCCCCCCCcEEEEEcCC
Q 000559 266 DDVWSK-NYGLWEVLKSPFMAGAPGSKIIVTTRD 298 (1422)
Q Consensus 266 Ddv~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~ 298 (1422)
|++..- ....++.+..... ..+.+||+..+.
T Consensus 94 De~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 94 DEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp ETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred eChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 999654 4444555544333 456777777654
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.00059 Score=81.18 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=106.7
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CCc-EEEEEEcCcccHHHHHHHHHHHhc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FNS-RAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
..++|-+..+..+...+..+...... .|. |+||||+|+.+++...... ... --+..+... .....+.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~~~~h 96 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFNNHNH 96 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHhcCCC
Confidence 46899999999888877654322111 233 9999999999987543111 100 000000000 00111110000
Q ss_pred C-----CCCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE-EEcCChHHHHhhC
Q 000559 237 L-----SSCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII-VTTRDENVALTLG 306 (1422)
Q Consensus 237 ~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~~ 306 (1422)
. ........++....+... +.+++-++|+|+++.-....|+.+...+......+++| +||+...+.....
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 0 000111222222222111 23567789999998766667888877776554555655 4666666655543
Q ss_pred CCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 307 CPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 307 ~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
..-..+++.+++.++..+.+.+.+-...- . -..+....|++.++|.+--+
T Consensus 177 SRc~~~ef~~ls~~el~~~L~~i~~~egi-~------ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 SRCQRYDLRRLSFEEIFKLLEYITKQENL-K------TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hcceEEEccCCCHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHHcCCCHHHH
Confidence 33367899999999999999888743211 1 12345677999999876433
No 72
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.58 E-value=5.1e-05 Score=81.55 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=54.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc--ccHHHHHHHHHHHhcCCCCCCCChh------HHHHHHHHH-hcccee
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD--FDILRISKAILESITLSSCDFKDLN------PVQVKLKQE-VAGRKF 261 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l~~~-l~~k~~ 261 (1422)
|+|||||++.+|++.....|+.++||.+.+. +++.++++++...+-....+..... ......... -.+++.
T Consensus 26 G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~v 105 (249)
T cd01128 26 KAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDV 105 (249)
T ss_pred CCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 9999999999999877555999999998776 7899999998443322222221111 112222222 248999
Q ss_pred EEEeccCC
Q 000559 262 LIVLDDVW 269 (1422)
Q Consensus 262 LlVlDdv~ 269 (1422)
++++|++.
T Consensus 106 ll~iDei~ 113 (249)
T cd01128 106 VILLDSIT 113 (249)
T ss_pred EEEEECHH
Confidence 99999994
No 73
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.54 E-value=0.00094 Score=82.51 Aligned_cols=199 Identities=19% Similarity=0.157 Sum_probs=116.4
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccccccc-C---CcEEEEEEcCc---ccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVED-F---NSRAWVCVSDD---FDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~-F---~~~~wv~~s~~---~~~~~~~~~ 230 (1422)
+.++|++..+..+.+.+..... ..+.+ |+||||+|+.+++..+... + ...-|+.+... .+...+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~--~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFP--QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCC--CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 3588999999999888754322 23333 9999999999987654322 2 13345555321 122222111
Q ss_pred ---------------HHHHhcCCCC----------------CCCCh-hHHHHHHHHHhccceeEEEeccCCCCCccchhh
Q 000559 231 ---------------ILESITLSSC----------------DFKDL-NPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEV 278 (1422)
Q Consensus 231 ---------------i~~~l~~~~~----------------~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~ 278 (1422)
.+...+.... +...+ ...+..+.+.++++++.++-|+.|..+...|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 1111111100 11111 234677888899999999988888776678888
Q ss_pred hhccCCCCCCCcEEEE--EcCChHH-HHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHH
Q 000559 279 LKSPFMAGAPGSKIIV--TTRDENV-ALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEK 355 (1422)
Q Consensus 279 l~~~~~~~~~gs~ilv--TtR~~~v-~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~ 355 (1422)
+...+..+.+...|++ ||++... ...+...-..+.+.+++.++.++++.+.+-.. ... -..++.+.|.+.
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~-~v~------ls~eal~~L~~y 384 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI-NVH------LAAGVEELIARY 384 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHC
Confidence 8877776655555655 6665432 12221112457789999999999999876321 110 113344556665
Q ss_pred hCCCchHHHHHHHH
Q 000559 356 CKGLPLAARTLGGL 369 (1422)
Q Consensus 356 c~glPLai~~~~~~ 369 (1422)
...-+-|+..++.+
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 55445666555544
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=7.3e-06 Score=74.78 Aligned_cols=90 Identities=24% Similarity=0.311 Sum_probs=55.1
Q ss_pred hcCCCcccEEEecccccCccCccccCC-CCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCe
Q 000559 564 LSKFKKLRVLSLRNYYITEVPNSIRLL-THLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLY 642 (1422)
Q Consensus 564 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~ 642 (1422)
+.+..+|...+|++|.++.+|..|... +..+.|+|++|.|+++|.++..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 445556666666666666666655432 3666666666666666666666666666666664 55556666666666666
Q ss_pred EeecCCCcccccc
Q 000559 643 FDISGQNLITEMP 655 (1422)
Q Consensus 643 L~l~~~~~~~~~p 655 (1422)
|+..+|. ...+|
T Consensus 128 Lds~~na-~~eid 139 (177)
T KOG4579|consen 128 LDSPENA-RAEID 139 (177)
T ss_pred hcCCCCc-cccCc
Confidence 6666655 33343
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=97.51 E-value=0.0056 Score=74.24 Aligned_cols=242 Identities=17% Similarity=0.143 Sum_probs=130.8
Q ss_pred CcccccchhHHHHHHHhcCCCCC--CCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTN--NDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~--~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
..++|.++.++++.+|+..-..+ .+.+-+ |+||||+|+.++++.. |+ ++-++++..... .....++...
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~---~~-~ielnasd~r~~-~~i~~~i~~~ 88 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG---WE-VIELNASDQRTA-DVIERVAGEA 88 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CC-EEEEcccccccH-HHHHHHHHHh
Confidence 35899999999999998643221 122222 9999999999999753 33 333444443222 2223333222
Q ss_pred cCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCc----cchhhhhccCCCCCCCcEEEEEcCChH-HHH-hhCCCC
Q 000559 236 TLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNY----GLWEVLKSPFMAGAPGSKIIVTTRDEN-VAL-TLGCPG 309 (1422)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~-~~~~~~ 309 (1422)
.... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ... ......
T Consensus 89 ~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~ 152 (482)
T PRK04195 89 ATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNAC 152 (482)
T ss_pred hccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccc
Confidence 1110 00113577999999966422 234555544432 2345666664321 111 222222
Q ss_pred ceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcC-C--ChHHHHHHHhcc
Q 000559 310 ECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCK-Q--RDAEWQDILNSN 386 (1422)
Q Consensus 310 ~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~--~~~~w~~~l~~~ 386 (1422)
..+.+.+++.++....+.+.+.... .. -..+....|++.++|-.-++......+... . +.+....+..
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~eg-i~------i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEG-IE------CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 6788999999998888877663321 11 123567889999998765554433333322 1 1233322221
Q ss_pred ccCCCCCCChhHHHHHhhc-cCchhhhHHhhhhccCCCCcccChHHHHHHHHHhCCcCC
Q 000559 387 IWDLSDDGEIPAVLQLSYH-HLPSHLKRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQ 444 (1422)
Q Consensus 387 ~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 444 (1422)
.....+++.++..-+. .-+......+..+ .++. ..+..|+.+.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1112367777776554 2233333322221 2222 45778999999764
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=2.2e-05 Score=71.71 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=74.7
Q ss_pred CcccEEEecccccCccCcc---ccCCCCcceeeecCccccccCcccccC-cccceeecccccccCccccccccccccCeE
Q 000559 568 KKLRVLSLRNYYITEVPNS---IRLLTHLRYLNFSGTRICHIPESVGFL-SHLQILLLKDCHRLKKLPTNVENLIDLLYF 643 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp~~---i~~L~~L~~L~L~~n~i~~lp~~~~~L-~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 643 (1422)
+.+..+||+.|.+..+++. +....+|...+|++|.+..+|+.|... +-+.+|+|++| .+..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 4556677888877666544 456677777788888888888776543 47888888874 778888888888888888
Q ss_pred eecCCCccccccccccccccccccceeEe
Q 000559 644 DISGQNLITEMPVGMNKLKCLLTLSNFVV 672 (1422)
Q Consensus 644 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 672 (1422)
+++.|. +...|.-|..|.+|-.|+.-.+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 888887 5566666777777777764433
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=0.001 Score=79.56 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=102.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhc--
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESIT-- 236 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-- 236 (1422)
..+||.+.....+.+++..+..... ..|- |+||||+|+.+++...... |+.. ..++.-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----~~~~-~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET-----GVTS-TPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----CCCC-CCCccCHHHHHHhcCCCCc
Confidence 4689999999999999976543221 1233 9999999999887542111 1100 00010011111110000
Q ss_pred ---CCCCCCCChhHHHHHHHH----HhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhhCCC
Q 000559 237 ---LSSCDFKDLNPVQVKLKQ----EVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTLGCP 308 (1422)
Q Consensus 237 ---~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~ 308 (1422)
.........++..+.+.. -..+++-++|+|+|..-.....+.+...+.....+.++|++|.+. .+....-..
T Consensus 89 viEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSR 168 (702)
T PRK14960 89 LIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISR 168 (702)
T ss_pred eEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHh
Confidence 000001112222111111 123566689999997665556666766665544566787777653 232222122
Q ss_pred CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
-..+++++++.++..+.+.+.+-... .. -..+....|++.++|-+-.+
T Consensus 169 Cq~feFkpLs~eEI~k~L~~Il~kEg-I~------id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 169 CLQFTLRPLAVDEITKHLGAILEKEQ-IA------ADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hheeeccCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHH
Confidence 26789999999999888877663221 11 22345678999999876443
No 78
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.49 E-value=0.00061 Score=74.02 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=92.8
Q ss_pred cchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCC
Q 000559 167 RDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDF 242 (1422)
Q Consensus 167 r~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 242 (1422)
.+..++++.+++.... ...+-+ |+|||++|+.+++... ......++++++.-.+. ...+
T Consensus 22 ~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKT~la~~~~~~~~-~~~~~~~~i~~~~~~~~---~~~~----------- 84 (226)
T TIGR03420 22 NAELLAALRQLAAGKG--DRFLYLWGESGSGKSHLLQAACAAAE-ERGKSAIYLPLAELAQA---DPEV----------- 84 (226)
T ss_pred cHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEEeHHHHHHh---HHHH-----------
Confidence 3445666766654322 222322 9999999999998753 22334566655432110 0011
Q ss_pred CChhHHHHHHHHHhccceeEEEeccCCCCCcc-ch-hhhhccCCC-CCCCcEEEEEcCChH---------HHHhhCCCCc
Q 000559 243 KDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYG-LW-EVLKSPFMA-GAPGSKIIVTTRDEN---------VALTLGCPGE 310 (1422)
Q Consensus 243 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~ 310 (1422)
...+.+ .-+||+||++.-... .| +.+...+.. ...+.+||+||+... +...+... .
T Consensus 85 ----------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~-~ 152 (226)
T TIGR03420 85 ----------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG-L 152 (226)
T ss_pred ----------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC-e
Confidence 111222 238999999654322 23 334333321 123458999887532 22222222 5
Q ss_pred eeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHH
Q 000559 311 CHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGG 368 (1422)
Q Consensus 311 ~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 368 (1422)
.+++.++++++-..++...+-.. ... --.+..+.+++.+.|.|..+.-+..
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~-~~~------~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARR-GLQ------LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 78999999999999887765321 111 2234567788889988877765543
No 79
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.00075 Score=80.45 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=104.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHH-----
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILE----- 233 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~----- 233 (1422)
.++||-+..++.+.+++..+...... .|- |+||||+|+.+++...-..-+..--+. ++.+..-...+.|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~~PCG~C~sC~~I~aG~hpD 94 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-AQPCGQCRACTEIDAGRFVD 94 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-CCCCcccHHHHHHHcCCCCc
Confidence 46899999999999999765432211 233 999999999987654211000000000 000000011111110
Q ss_pred HhcCCCCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE-EEcCChHHHHhhCCC
Q 000559 234 SITLSSCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII-VTTRDENVALTLGCP 308 (1422)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~~~~ 308 (1422)
.+.........+++..+.+... ..++.-++|+|++...+...++.+...+..-..++++| +||....+.....+.
T Consensus 95 viEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 95 YIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred ceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 0000000111223222222221 13556689999997776667777777665433455555 455555554333222
Q ss_pred CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
-..+.+..++.++..+.+.+.+-.. ... -..+..+.|++.++|.|.....
T Consensus 175 Cq~f~f~~ls~eei~~~L~~Il~~E-gi~------~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 175 CLQFNLKQMPPGHIVSHLDAILGEE-GIA------HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHhcccCCCChHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 2678999999999998888765321 111 1234557899999999865443
No 80
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.46 E-value=9.9e-05 Score=82.28 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=54.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc--cHHHHHHHHHHHhcCCCCCCCChh------HHHHHHHHH-hcccee
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF--DILRISKAILESITLSSCDFKDLN------PVQVKLKQE-VAGRKF 261 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l~~~-l~~k~~ 261 (1422)
|+||||||++||++.....|+.++||.+.+.+ ++.++++++...+-....+..... ...+..++. -.++++
T Consensus 179 GvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dV 258 (416)
T PRK09376 179 KAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDV 258 (416)
T ss_pred CCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999875569999999999887 788888888743322222221111 111112222 257999
Q ss_pred EEEeccCC
Q 000559 262 LIVLDDVW 269 (1422)
Q Consensus 262 LlVlDdv~ 269 (1422)
+|++|++.
T Consensus 259 lL~iDsIt 266 (416)
T PRK09376 259 VILLDSIT 266 (416)
T ss_pred EEEEEChH
Confidence 99999993
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.00011 Score=87.92 Aligned_cols=184 Identities=18% Similarity=0.170 Sum_probs=106.2
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC-c-ccc-cccHHHHHHHHhccccccc-CCcEEEEEEcC-------cccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND-D-VNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSD-------DFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~-~-v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~-------~~~~~~~~~~ 230 (1422)
.+++|.+..++.+.+++........ . .|- |+||||+|+.+++.....+ +...+|+|.+. ..++..
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e---- 89 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE---- 89 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE----
Confidence 3589999999999888876432211 1 122 9999999999987654222 32233333211 111100
Q ss_pred HHHHhcCCCCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcC-ChHHHHh
Q 000559 231 ILESITLSSCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTR-DENVALT 304 (1422)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR-~~~v~~~ 304 (1422)
+... .....+... .+++.+ .+++-++|+|+++......++.+...+......+.+|++|. ...+...
T Consensus 90 ----l~~~--~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 90 ----IDAA--SNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred ----eccc--ccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 0000 111122211 122222 24566899999977665667777777655444555555554 3344333
Q ss_pred hCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 305 LGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 305 ~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
.......+++.+++.++..+.+.+.+-...- . -..+.+..|++.++|.+--+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~------i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-E------AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHHcCCCHHHH
Confidence 3332367899999999999999887743211 1 12346788999999987543
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.44 E-value=0.0014 Score=76.46 Aligned_cols=194 Identities=14% Similarity=0.067 Sum_probs=102.2
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCC-cEEEEEEcCcccH-HHHHH---HHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFN-SRAWVCVSDDFDI-LRISK---AIL 232 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~-~~~wv~~s~~~~~-~~~~~---~i~ 232 (1422)
..++|++..++.+.+++..+... .+-+ |+||||+|+.+++......+. ..+.++++.-.+. ..... ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~--~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLP--HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCc--eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchh
Confidence 46889999999999988654321 2222 999999999998765422232 2345544331100 00000 000
Q ss_pred HHhcCC-CCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhh
Q 000559 233 ESITLS-SCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTL 305 (1422)
Q Consensus 233 ~~l~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~ 305 (1422)
..++.. .......+.....++..- .+.+-+||+||+..-.......+...+......+++|+||... .+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 000001111111111111 1334589999996543333444555444334457788877543 222223
Q ss_pred CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHH
Q 000559 306 GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAAR 364 (1422)
Q Consensus 306 ~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 364 (1422)
......+.+.+++.++..+.+.+.+.... .. -..+.++.+++.++|.+-.+.
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~------~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEG-VD------YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHHH
Confidence 22335688899999999888887663221 11 123567888888888765443
No 83
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=9.7e-05 Score=76.77 Aligned_cols=203 Identities=15% Similarity=0.064 Sum_probs=113.5
Q ss_pred ccceEEeccCCCchh--hhHhhcchhhHHHHHHhcccccc--cccccccCCcccceEeccCCCCCcccCCCCCCCCCCcE
Q 000559 1148 ALQYLSIADCPQLES--IAESFHDNAALVFILIGNCRKLQ--SVPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRV 1223 (1422)
Q Consensus 1148 ~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 1223 (1422)
.++-|.+.+|.+-.. ....-..++.++.+||.+|.+.. .+...+.++|.|+.|+|+.|+....+.....+..+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344555656543322 22222346778889999887765 44556688999999999999877666544456789999
Q ss_pred EEEecCCCCC-cCccccCCCCccceeecccccC---------CCCCCccccccccccccC---cccccccCcCCCcceEE
Q 000559 1224 IEISRCEELR-PLPSGVERLNSLQELDISLCIP---------ASGLPTNLTSLSIEDLKM---PLSCWGLHKLTSLRKLE 1290 (1422)
Q Consensus 1224 L~l~~n~~l~-~~p~~~~~l~~L~~L~ls~n~~---------~~~lp~~L~~L~l~~~~~---~~~~~~l~~l~~L~~L~ 1290 (1422)
|-|.+..+.- .....+..++.++.|++|.|.. .+.+.+.+..|+...|.. ...+..-.-++++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 9998744321 2334567788899999998811 011112222222222210 00000012256666666
Q ss_pred ecCCCCCcccccccccccCCccccceeccccccccCC-CcCCCCCCCcccceeccCCCCCCCCC
Q 000559 1291 IRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCL-SSRGFQNLTSLEYLSISECPRLKSFP 1353 (1422)
Q Consensus 1291 L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~L~~L~l~~c~~l~~lp 1353 (1422)
+..||.-+.-.+. ....++.+--|+|+. +++.+. ..+.+.++++|..|.+.++|....+.
T Consensus 206 v~e~PlK~~s~ek--~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 206 VCEGPLKTESSEK--GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred eecCcccchhhcc--cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 6666543332221 222345555666665 233332 11245667777777777776665554
No 84
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=1.8e-05 Score=82.03 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=86.2
Q ss_pred cccccccceEEecccCCccchhhh-ccccCCceEEEccCcCccccc-hHhhhccCccceEEecCCCCcccccc---ccCC
Q 000559 972 LHSVASLRKLFVANCQSLVSFLEA-CFLSNLSELVIQNCSALISLN-EVTKHNYLHLKSLQIEGCQSLMLIAR---RQLP 1046 (1422)
Q Consensus 972 ~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~L~~~~~l~~~~-~~~~~~l~~L~~L~L~~c~~l~~i~~---~~~~ 1046 (1422)
+..|..|+.|.+.++..-..+... .--.+|+.|+|+.|..+++.. ...+.++..|++|+++.|...+..-. ....
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 567788888888887543333221 225789999999998887754 45667889999999999866544311 1233
Q ss_pred ccCcEEEeeccCCcccccccccccCCcCCccEEeccCCCCCcccc-ccCcccccccceeeccCCCC
Q 000559 1047 SSLTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLS-RRGRLSTVLRRLKIQTCPKL 1111 (1422)
Q Consensus 1047 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~L 1111 (1422)
..++.|++.+|..+-.......-....++|..|||++|..++.-. .....++.|+++.++.|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 567778887776543222111112335668888888877665321 12334555666666666543
No 85
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0016 Score=80.59 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=106.1
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc--------------------CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED--------------------FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~--------------------F~~~~wv~~ 218 (1422)
..+||.+..++.+.+++..+.-... ..|- |+||||+|+.+++...... |..+++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 4689999999999998876533222 1222 9999999999987643211 111122221
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHH-HhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcC
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQ-EVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTR 297 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR 297 (1422)
+....+.. .+++.+ .+.. -..+++-++|+|++.......++.+...+-......++|++|.
T Consensus 96 as~~kVDd-IReLie-----------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 96 ASRTKVDD-TRELLD-----------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred ccccCHHH-HHHHHH-----------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 11111111 122222 1111 1246677999999977766677777766654444566666554
Q ss_pred -ChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch-HHHHH
Q 000559 298 -DENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL-AARTL 366 (1422)
Q Consensus 298 -~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 366 (1422)
...+.......-..|++++++.++..+.+.+.+-.. ... -..+.+..|++.++|.|- |+..+
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~------~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLP------FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444443322222679999999999998887765321 111 234567889999999885 44443
No 86
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0053 Score=70.30 Aligned_cols=168 Identities=14% Similarity=0.151 Sum_probs=109.0
Q ss_pred ccccchhHHHHHHHhcCCCCCCC--cccc----cccHHHHHHHHhcccccccCCc-EEEEEEcCcccHHHHHHHHHHHhc
Q 000559 164 VYGRDGDKAKVLDMVLSHDTNND--DVNF----RVGKTTLARLVYNDLAVEDFNS-RAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 164 ~vGr~~~~~~i~~~l~~~~~~~~--~v~i----GvGKTtLa~~v~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
+.+|+++++++...|...-.+.. .+-| |.|||+.++.|.+..+...-.. +++|++-......+++.+|+.+++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 88999999999988865322221 1222 9999999999999876443222 899999999999999999999997
Q ss_pred CCCCCCCChhHHHHHHHHHhc--cceeEEEeccCCCCCccchhhhhccCCCCCC-CcEE--EEEcCChHHHHhhCCC---
Q 000559 237 LSSCDFKDLNPVQVKLKQEVA--GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAP-GSKI--IVTTRDENVALTLGCP--- 308 (1422)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~-gs~i--lvTtR~~~v~~~~~~~--- 308 (1422)
..........+....+.+.+. ++.+++|||+++.-....-+.+...+..... +++| |..+-+......+...
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 554445556666667777774 5789999999955321111222222222111 3443 3344443333322211
Q ss_pred ---CceeeCCCCChhhHHHHHHHhhh
Q 000559 309 ---GECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 309 ---~~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
...+...+-+.+|-...+..++-
T Consensus 179 ~l~~~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 179 SLGPSEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred ccCcceeeeCCCCHHHHHHHHHHHHH
Confidence 13366788888888888888773
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.002 Score=77.23 Aligned_cols=181 Identities=17% Similarity=0.133 Sum_probs=104.8
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccc-------------------c-CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVE-------------------D-FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~-------------------~-F~~~~wv~~ 218 (1422)
..++|.+..++.+...+......... .|- |+||||+|+.+++...-. . |...++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 46899999999999988754322111 222 999999999998643210 0 222333332
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE-EEc
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII-VTT 296 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il-vTt 296 (1422)
.....+.+ ..++...+... ..+++-++|+|++..-....++.+...+......+++| +||
T Consensus 96 as~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 96 ASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred ccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 22222111 11122222111 23566799999997666566777777776554456555 455
Q ss_pred CChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc-hHHHHHH
Q 000559 297 RDENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP-LAARTLG 367 (1422)
Q Consensus 297 R~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 367 (1422)
....+.......-.++++++++.++..+.+.+.+-. .+.. -..+....|++.++|-+ -|+..+-
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~-egi~------~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAK-ENIN------SDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH-cCCC------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 544444333322378899999999988777765422 1111 22345678899999865 4554443
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0032 Score=74.81 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=102.4
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc--------------------CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED--------------------FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~--------------------F~~~~wv~~ 218 (1422)
..+||.+.....+...+..+...... .|- |+||||+|+.+++...... +..++.+++
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 46899988888888877654322111 122 9999999999987532110 111223333
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE-EcC
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV-TTR 297 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv-TtR 297 (1422)
+....+..+ +++.+.... .-..+++-++|+|++..-.....+.+...+........+|+ ||.
T Consensus 94 a~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn 156 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTN 156 (472)
T ss_pred cccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 222222111 122211110 01234567999999965433445556555544333444444 444
Q ss_pred ChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCC-CchHHHHHHHHH
Q 000559 298 DENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKG-LPLAARTLGGLL 370 (1422)
Q Consensus 298 ~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~l 370 (1422)
...+..........+++.+++.++....+.+.+.... .. -..+....|++.++| ++.|+..+-.+.
T Consensus 157 ~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~------i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 157 LEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IE------IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred hHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445544444446889999999998888887763221 11 223466788887754 567776665543
No 89
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.32 E-value=0.00028 Score=74.05 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=39.4
Q ss_pred cccccchhHHHHHHHhcCCCCC-CCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCc-----ccHHHHHHHHH
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTN-NDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-----FDILRISKAIL 232 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~-~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~ 232 (1422)
.||||+++.+++...+...... ...+-| |+|||+|+++++.......+. .+.+.+... .....++++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDSERNPYSPFRSALRQLI 79 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETTTS-HHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEeccccchhhHHHHHHHHHH
Confidence 4899999999999999422111 233333 999999999999887644322 333333333 11255555555
Q ss_pred HHh
Q 000559 233 ESI 235 (1422)
Q Consensus 233 ~~l 235 (1422)
.++
T Consensus 80 ~~~ 82 (185)
T PF13191_consen 80 DQL 82 (185)
T ss_dssp ---
T ss_pred HHh
Confidence 554
No 90
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.31 E-value=5.6e-05 Score=77.38 Aligned_cols=90 Identities=21% Similarity=0.253 Sum_probs=64.3
Q ss_pred hcCCCcccEEEecccccC-----ccCccccCCCCcceeeecCcccc----ccC-------cccccCcccceeeccccccc
Q 000559 564 LSKFKKLRVLSLRNYYIT-----EVPNSIRLLTHLRYLNFSGTRIC----HIP-------ESVGFLSHLQILLLKDCHRL 627 (1422)
Q Consensus 564 ~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~n~i~----~lp-------~~~~~L~~L~~L~L~~~~~~ 627 (1422)
+..+..+..+|||+|.|. .+...|.+-.+|+.-+++.-... ++| +.+-++++|++.+||.|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344788999999999986 34455677788999988863221 333 34677889999999988665
Q ss_pred Cccccc----cccccccCeEeecCCCccccc
Q 000559 628 KKLPTN----VENLIDLLYFDISGQNLITEM 654 (1422)
Q Consensus 628 ~~lP~~----i~~L~~L~~L~l~~~~~~~~~ 654 (1422)
...|+. |+.-+.|.||.+++|. ++.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 555543 4667889999998887 4433
No 91
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.29 E-value=0.00086 Score=67.32 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=66.9
Q ss_pred cccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCC
Q 000559 165 YGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSC 240 (1422)
Q Consensus 165 vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 240 (1422)
+|++..+..+...+..... ..+-| |+||||+|+.+++... ..-..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~--~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCC--CeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788889999888865422 23333 9999999999998753 112346777665543322211111100
Q ss_pred CCCChhHHHHHHHHHhccceeEEEeccCCCCCc---cchhhhhccCCCC---CCCcEEEEEcCChH
Q 000559 241 DFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNY---GLWEVLKSPFMAG---APGSKIIVTTRDEN 300 (1422)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~l~~~~~~~---~~gs~ilvTtR~~~ 300 (1422)
............++.++|+||++.... ..+..+....... ..+.+||+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111222345678999999975311 2222222222221 35788888888653
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.00093 Score=76.62 Aligned_cols=193 Identities=14% Similarity=0.071 Sum_probs=106.7
Q ss_pred CCcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc---CCc----------------EEEEEE
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED---FNS----------------RAWVCV 218 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~---F~~----------------~~wv~~ 218 (1422)
...++|.++.++.+.+.+..+.-.... .|- |+||+|+|..+++..--.. .+. +-|+..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 457899999999999998775432211 233 9999999988876432111 110 001111
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhc-----cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVA-----GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII 293 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il 293 (1422)
+..+|+..+.... ..-+........+++ +..+.+.+. +++-++|+||+...+......+...+.....++.+|
T Consensus 98 ~~HPDl~~i~~~~-~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 98 GAHGGLLTLERSW-NEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred cCCCCeEEEeccc-ccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1111111000000 000000001112333 223333332 456689999997776666666666665444466677
Q ss_pred EEcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 294 VTTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 294 vTtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
++|.+. .+.......-..+.+.+++.++..+++.+.... ........+++.++|.|.....+
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----------~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----------LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 777664 333333333368899999999999998775411 11112267899999999866554
No 93
>PLN03025 replication factor C subunit; Provisional
Probab=97.23 E-value=0.0017 Score=74.14 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=98.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc-ccc-cccHHHHHHHHhcccccccCC-cEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD-VNF-RVGKTTLARLVYNDLAVEDFN-SRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~-v~i-GvGKTtLa~~v~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
.+++|.++.++.+.+++.......-. .|- |+||||+|+.+++......|. .++=++.+...... ..+++++.+...
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~ 91 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKIKMFAQK 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHHHHHHhc
Confidence 35789888888888777653322101 122 999999999998875322232 12222333322222 222222222111
Q ss_pred CCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhhCCCCceeeCCCC
Q 000559 239 SCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTLGCPGECHNLELL 317 (1422)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~l 317 (1422)
.... -.++.-++|+|+++.-.....+.+...+......+++++++... .+..........++++++
T Consensus 92 ~~~~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 92 KVTL-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred cccC-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 0000 01346689999997665444455554444334557777776442 222222222257899999
Q ss_pred ChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 318 SDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 318 ~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
+.++..+.+.+.+-.. ... -..+....|++.++|-.-
T Consensus 159 ~~~~l~~~L~~i~~~e-gi~------i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 159 SDQEILGRLMKVVEAE-KVP------YVPEGLEAIIFTADGDMR 195 (319)
T ss_pred CHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHH
Confidence 9999988888776321 111 123466788888888653
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0026 Score=77.32 Aligned_cols=191 Identities=15% Similarity=0.160 Sum_probs=102.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc---CCcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED---FNSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
.++||-+..+..+.+++........ ..|- |+||||+|+.+++..--.. ..+.-+ ..++.-...+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 4689988888999998876533221 1233 9999999999865432110 000000 0111111111111000
Q ss_pred -----cCCCCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-CChHHHHhh
Q 000559 236 -----TLSSCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-RDENVALTL 305 (1422)
Q Consensus 236 -----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~ 305 (1422)
.........+++..+.+... ..++.-++|+|+|.......++.+...+.......++|++| ....+....
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 00000111222222222111 12345588999998776667777777665544455666554 444444333
Q ss_pred CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 306 GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 306 ~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
...-..++++.++.++..+.+.+.+-.. ... -..+....|++.++|.+--+
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~e-gi~------ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAE-NVP------AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHH
Confidence 2223678999999999888887765321 111 12345678889998876444
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.0028 Score=74.76 Aligned_cols=178 Identities=17% Similarity=0.141 Sum_probs=104.8
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccc-------------------cc-CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAV-------------------ED-FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~-------------------~~-F~~~~wv~~ 218 (1422)
.++||.+..++.+.+.+..+...... .|. |+||||+|+.++...-- .. +..++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999888888888655332111 233 99999999988763210 01 222344444
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-C
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-R 297 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R 297 (1422)
+....+.+ .+++++..... -+.+++-++|+|++..-.....+.+...+....+.+++|++| .
T Consensus 93 as~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 93 ASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred ccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 33332222 12222222100 012455689999996655556666766665544566666554 4
Q ss_pred ChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 298 DENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 298 ~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
...+.......-..+++.+++.++..+.+.+.+....- . -..+.+..|++.++|.+-.+
T Consensus 156 ~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~------i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 156 VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-E------HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHHcCCCHHHH
Confidence 45555544333377899999999998888887633211 1 22345678999998877543
No 96
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0011 Score=77.04 Aligned_cols=192 Identities=15% Similarity=0.077 Sum_probs=104.0
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHh---
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESI--- 235 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l--- 235 (1422)
..+||.+..+..+..++........ ..|- |+||||+|+.+++......... ...+.......++.......+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~--~~pCg~C~sC~~i~~g~~~dviEI 95 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG--NEPCNECTSCLEITKGISSDVLEI 95 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC--ccccCCCcHHHHHHccCCccceee
Confidence 4689999999999998876543211 1222 9999999999987643211100 000111111111111110000
Q ss_pred cC-CCCCCCChhHHHHHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE-EEcCChHHHHhhCCCCcee
Q 000559 236 TL-SSCDFKDLNPVQVKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII-VTTRDENVALTLGCPGECH 312 (1422)
Q Consensus 236 ~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~~~~~~~~ 312 (1422)
.. .....+++.++.+.+... ..++.-++|+|+|..-....++.+...+........+| .||....+.......-..|
T Consensus 96 daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~ 175 (484)
T PRK14956 96 DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDF 175 (484)
T ss_pred chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhee
Confidence 00 000111122222222211 23556699999997766677787776664433344544 4555455544333222578
Q ss_pred eCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchH
Q 000559 313 NLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLA 362 (1422)
Q Consensus 313 ~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 362 (1422)
.+.+++.++..+.+.+.+-.. ... -..+....|++.++|.+--
T Consensus 176 ~f~~ls~~~i~~~L~~i~~~E-gi~------~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 176 IFKKVPLSVLQDYSEKLCKIE-NVQ------YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred eecCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCChHHH
Confidence 999999999888887765321 111 2234668899999998743
No 97
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.0029 Score=75.89 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=102.2
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
..++|++..++.+.+++..+...... .|- |+||||+|+.+++...-.. |... ..++.-...+.+.......
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----~~~~-~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----PKDG-DCCNSCSVCESINTNQSVD 89 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCC-CCCcccHHHHHHHcCCCCc
Confidence 46899999999999998665332211 233 9999999999987643111 2110 0111111111111111000
Q ss_pred -----CCCCCChhHHHH---HHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE-EcCChHHHHhhCCC
Q 000559 239 -----SCDFKDLNPVQV---KLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV-TTRDENVALTLGCP 308 (1422)
Q Consensus 239 -----~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv-TtR~~~v~~~~~~~ 308 (1422)
.......++... .+... ..+++-++|+|++..-....+..+...+......+.+|+ |+....+.......
T Consensus 90 iieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR 169 (605)
T PRK05896 90 IVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR 169 (605)
T ss_pred eEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh
Confidence 000011222111 11110 123344699999976555667777666654334555554 44444444333222
Q ss_pred CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc-hHHHHHH
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP-LAARTLG 367 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 367 (1422)
...+++.+++.++....+.+.+.... .. -..+.+..+++.++|.+ .|+..+-
T Consensus 170 cq~ieF~~Ls~~eL~~~L~~il~keg-i~------Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 170 CQRYNFKKLNNSELQELLKSIAKKEK-IK------IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhcccCCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 26789999999999888877663211 11 11345678899999865 3444443
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0034 Score=76.11 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=98.2
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc--------------------CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED--------------------FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~--------------------F~~~~wv~~ 218 (1422)
..+||.+..+..+.+++......... .|- |+||||+|+.+++...... |..++.++.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 46899999999999998765332211 233 9999999998877532110 111122221
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV 294 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv 294 (1422)
+.. ..++.+...+... ..+++-++|+|++........+.+...+......+++|+
T Consensus 96 As~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fIL 154 (709)
T PRK08691 96 ASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (709)
T ss_pred ccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEE
Confidence 111 1122222211110 235566899999966544445556555543334566776
Q ss_pred EcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 295 TTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 295 TtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
+|.+. .+.......-..+.+..++.++..+.+.+.+-.. ... -..+....|++.++|.+--+
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE-gi~------id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE-KIA------YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc-CCC------cCHHHHHHHHHHhCCCHHHH
Confidence 66543 2222211111457888999999888887766321 111 12346688999999887444
No 99
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.17 E-value=3e-05 Score=89.96 Aligned_cols=111 Identities=28% Similarity=0.291 Sum_probs=73.6
Q ss_pred hHHHhcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcc-cccCcccceeecccccccCcccccccccc
Q 000559 560 LSEVLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPES-VGFLSHLQILLLKDCHRLKKLPTNVENLI 638 (1422)
Q Consensus 560 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~-~~~L~~L~~L~L~~~~~~~~lP~~i~~L~ 638 (1422)
...++.-++.|+.|||++|.+.+.- .+..|.+|++|||++|.+..+|.- .... +|+.|.+++| .+..+- +|.+|+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~-gie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLR-GIENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhh-hHHhhh
Confidence 3445566777888888888887764 677888888888888888877753 2222 3888888875 555553 577888
Q ss_pred ccCeEeecCCCcccccc-ccccccccccccceeEecc
Q 000559 639 DLLYFDISGQNLITEMP-VGMNKLKCLLTLSNFVVGL 674 (1422)
Q Consensus 639 ~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~ 674 (1422)
+|++||+++|-+.+.-- .-+..|..|..|.+-+|..
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88888888875332110 1255666677776655544
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.15 E-value=0.0052 Score=64.25 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=62.7
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCc
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREF 336 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 336 (1422)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+.........++++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456689999996655556777777776555566777777643 333333323368999999999988888765 1 1
Q ss_pred cccccccchHHHHHHHHHHhCCCchH
Q 000559 337 VASSRLCNSEFVRRKVVEKCKGLPLA 362 (1422)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~c~glPLa 362 (1422)
+ .+.+..|++.++|.|..
T Consensus 170 -------~-~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -------S-EEAAELLLALAGGSPGA 187 (188)
T ss_pred -------C-HHHHHHHHHHcCCCccc
Confidence 1 24578999999998853
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0067 Score=69.27 Aligned_cols=193 Identities=12% Similarity=0.132 Sum_probs=107.8
Q ss_pred CCcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc---CCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED---FNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
...++|-++..+.+...+..+...... .|- |+||||+|..+++..-... +.... ....+.-....+.+...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcC
Confidence 457899999999999999765432211 222 9999999998887643210 21110 01111111122333222
Q ss_pred -------hcCC--C-----CCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEE-EE
Q 000559 235 -------ITLS--S-----CDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKI-IV 294 (1422)
Q Consensus 235 -------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~i-lv 294 (1422)
+..+ . .....+++.. .+.+.+ .+++-++|+|++...+....+.+...+........+ ++
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 1000 0 0111233332 344443 246668999999777666666665555433334454 45
Q ss_pred EcCChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 295 TTRDENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 295 TtR~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
|++-..+.....+.-..+.+.+++.++..+++.+.... .. . + .+.+..|++.++|.|.....+
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~-----~-~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--S-----D-GEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--C-----C-HHHHHHHHHHcCCCHHHHHHH
Confidence 54444443333222268899999999999998874311 11 0 1 234678999999999866544
No 102
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.10 E-value=0.0048 Score=71.20 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=98.8
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEE--cCcccHHHHHHHHHHHh
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCV--SDDFDILRISKAILESI 235 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l 235 (1422)
..++|+++.++.+.+++...... .+-+ |+||||+|+.+++......+.. .++.+ +...... ...+.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMP--HLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchH-HHHHHHHHH
Confidence 35889999999999998654322 2222 9999999999988753222321 22322 2221111 111111111
Q ss_pred cCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhCCCCceeeC
Q 000559 236 TLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLGCPGECHNL 314 (1422)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l 314 (1422)
..... .....+-++|+|++..-.....+.+...+......+++|+++.. ..+..........+++
T Consensus 93 ~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 93 ARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 10000 00123558999998654434455565555544455677777643 2222212111256889
Q ss_pred CCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 315 ELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 315 ~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
++++.++....+.+.+.... .. -..+.+..+++.++|.+--+
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~-~~------i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEG-IE------ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHH
Confidence 99999998888887763221 11 12346788899999877553
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0019 Score=76.00 Aligned_cols=194 Identities=12% Similarity=0.171 Sum_probs=104.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CCcEEEEE-EcCcccHHHHHHHHHHHhc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FNSRAWVC-VSDDFDILRISKAILESIT 236 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~-~s~~~~~~~~~~~i~~~l~ 236 (1422)
..++|.+..++.+.+++..+...... .|- |+||||+|..+++...-.. .....|.. ....+..-...+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 46889999999888888754332111 122 9999999999887543211 11111110 0011111111111111110
Q ss_pred CC-----CCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-CChHHHHhh
Q 000559 237 LS-----SCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-RDENVALTL 305 (1422)
Q Consensus 237 ~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~ 305 (1422)
.. .......++... +.+.+ .+++-++|+|++..-....++.+...+......+.+|++| +...+....
T Consensus 96 ~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 96 LNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 00 001111233222 22222 2455688999997655556777777776555566666554 444444333
Q ss_pred CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 306 GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 306 ~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
.....+++++++++++..+.+...+-.. ... -..+.+..|++.++|.+--+
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~~------i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAE-GIS------VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHH
Confidence 2222568899999999888777765221 111 22356788999999977433
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.0058 Score=70.79 Aligned_cols=185 Identities=15% Similarity=0.120 Sum_probs=98.8
Q ss_pred CcccccchhHHHHHHHhcCCCCC--------CCc---ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTN--------NDD---VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISK 229 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~--------~~~---v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 229 (1422)
..++|-+..++.+.+++..+... ... .|- |+||||+|+.+++..--.. .. +..++.. ...+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~-~~--~~~Cg~C----~~C~ 77 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD-PD--EPGCGEC----RACR 77 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC-CC--CCCCCCC----HHHH
Confidence 35889999999999999765311 011 122 9999999999876421110 00 0000000 0001
Q ss_pred HHHHHhcC------CCCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC
Q 000559 230 AILESITL------SSCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD 298 (1422)
Q Consensus 230 ~i~~~l~~------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 298 (1422)
.+...-.. .......+++.. .+.+.. .+++-++|+|++..........+...+.....+..+|++|.+
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 11000000 000011122222 122221 244557888999776655556666655444456666666655
Q ss_pred -hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 299 -ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 299 -~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
..+.......-..+.+.+++.++..+.+.+.. + -..+.+..+++.++|.|.....+
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34443333222678999999999988886432 1 11235678999999999755443
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.06 E-value=0.0021 Score=80.14 Aligned_cols=173 Identities=19% Similarity=0.195 Sum_probs=89.1
Q ss_pred CcccccchhHH---HHHHHhcCCCCCCCc-ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhc
Q 000559 162 PAVYGRDGDKA---KVLDMVLSHDTNNDD-VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 162 ~~~vGr~~~~~---~i~~~l~~~~~~~~~-v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
..|+|.+..+. .+.+.+.......-. .|- |+||||+|+.+++.... .|. .++.+. ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-~f~---~lna~~-~~i~----------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA-HFS---SLNAVL-AGVK----------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC-cce---eehhhh-hhhH-----------
Confidence 35789887764 455555433221111 122 99999999999986431 131 111110 0111
Q ss_pred CCCCCCCChhHHHHHHHHHh--ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE--EcCChH--HHHhhCCCCc
Q 000559 237 LSSCDFKDLNPVQVKLKQEV--AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV--TTRDEN--VALTLGCPGE 310 (1422)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~--v~~~~~~~~~ 310 (1422)
+..+......+.+ .+++.+||+|||+.-+...++.+...+. .|+.++| ||++.. +.........
T Consensus 92 -------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 92 -------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred -------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcccc
Confidence 1111111222222 2467799999997654455555654432 3555555 344432 2222222236
Q ss_pred eeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc
Q 000559 311 CHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 311 ~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
++.+++++.++...++.+.+-..........+.-.++....|++.+.|..
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 78999999999999988766310000000001122345677888887753
No 106
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.0004 Score=86.08 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=83.6
Q ss_pred ccCcccceecccccccCccccchhhhHHHhcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccC--ccccc
Q 000559 535 NKVEHLRTFWPIILHEGTRYITNFVLSEVLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIP--ESVGF 612 (1422)
Q Consensus 535 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp--~~~~~ 612 (1422)
..+|.||+|.+-+.. +..+-+...+.+|++|+.||+|+++++.+ ..+++|++|+.|.+++=.+..-+ ..+.+
T Consensus 145 ~~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred hhCcccceEEecCce-----ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 457889998876542 12233567788999999999999999988 78999999999999987776433 35788
Q ss_pred CcccceeecccccccCccccc-------cccccccCeEeecCCCcccc
Q 000559 613 LSHLQILLLKDCHRLKKLPTN-------VENLIDLLYFDISGQNLITE 653 (1422)
Q Consensus 613 L~~L~~L~L~~~~~~~~lP~~-------i~~L~~L~~L~l~~~~~~~~ 653 (1422)
|++|++||+|.. .....|.- -..|++||.||.+++.+...
T Consensus 219 L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 219 LKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999999999984 33333311 13488999999998874433
No 107
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.05 E-value=0.015 Score=63.00 Aligned_cols=201 Identities=14% Similarity=0.063 Sum_probs=114.3
Q ss_pred CCcccccc---hhHHHHHHHhcCCCCCCCc-----ccc-cccHHHHHHHHhccccccc-----CCcEEEEEEcCcccHHH
Q 000559 161 EPAVYGRD---GDKAKVLDMVLSHDTNNDD-----VNF-RVGKTTLARLVYNDLAVED-----FNSRAWVCVSDDFDILR 226 (1422)
Q Consensus 161 ~~~~vGr~---~~~~~i~~~l~~~~~~~~~-----v~i-GvGKTtLa~~v~~~~~~~~-----F~~~~wv~~s~~~~~~~ 226 (1422)
.+.+||-. +.++++.+.+..+.. .+. ||= |.|||++++++...+-... --.|+.|.+...++..+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~-~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR-HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc-cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 44566643 335555555554433 222 222 9999999999986543211 12577888888999999
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHHHhcc-ceeEEEeccCCCC---Cccchhhh---hccCCCCCCCcEEEEEcCCh
Q 000559 227 ISKAILESITLSSCDFKDLNPVQVKLKQEVAG-RKFLIVLDDVWSK---NYGLWEVL---KSPFMAGAPGSKIIVTTRDE 299 (1422)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~l---~~~~~~~~~gs~ilvTtR~~ 299 (1422)
+...|+.+++.+........+....+.+.++. +--+||+|.+.+. ....-..+ ...+.+.-.=+-|.|-|+..
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 99999999998876666666666666666653 3448899998542 00111111 12222222334566666654
Q ss_pred HHHHhh----CCCCceeeCCCCChhh-HHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHH
Q 000559 300 NVALTL----GCPGECHNLELLSDND-CWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAAR 364 (1422)
Q Consensus 300 ~v~~~~----~~~~~~~~l~~l~~~~-~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 364 (1422)
.-+-.. ...-.++.+.....++ ...|+......- --..++. -...++++.|...++|+.--+.
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~L-PLr~~S~-l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERAL-PLRKPSN-LASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhC-CCCCCCC-CCCHHHHHHHHHHcCCchHHHH
Confidence 333111 1112556676666554 444443332111 1111111 1456799999999999875543
No 108
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.04 E-value=3.6e-05 Score=89.40 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=88.1
Q ss_pred CcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCcccc-ccccccccCeEeec
Q 000559 568 KKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPT-NVENLIDLLYFDIS 646 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~-~i~~L~~L~~L~l~ 646 (1422)
-.|.+-++++|.+..+-.++.-+.+|+.|||++|++...- .+..|.+|++|||+.| .+..+|. ....+. |+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeec
Confidence 4677888999999988888999999999999999999875 6999999999999996 6777774 233444 9999999
Q ss_pred CCCccccccccccccccccccceeEeccCCCC
Q 000559 647 GQNLITEMPVGMNKLKCLLTLSNFVVGLNTGS 678 (1422)
Q Consensus 647 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~ 678 (1422)
+|. +..+ .++.+|++|+.|++++|-+....
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHhhhhcch
Confidence 998 5555 57999999999999888665533
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.008 Score=72.64 Aligned_cols=194 Identities=15% Similarity=0.188 Sum_probs=104.7
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
.+++|-+..++.+.+.+......... .|- |+||||+|+.+++..-... .+. ..++.-...+.|......
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCCC
Confidence 36789888888888888654321111 122 9999999999987643211 100 011111111111111000
Q ss_pred C-----CCCCCChhHHHHHHHHH-----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhC
Q 000559 238 S-----SCDFKDLNPVQVKLKQE-----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLG 306 (1422)
Q Consensus 238 ~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~ 306 (1422)
. ......+++.. .+.+. ..+++-++|+|++..-....++.+...+........+|++|.. ..+.....
T Consensus 89 Dv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 89 DVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred ceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH
Confidence 0 00001122211 12222 2355669999999766556667777666443344556665544 44443332
Q ss_pred CCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc-hHHHHHHHHH
Q 000559 307 CPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP-LAARTLGGLL 370 (1422)
Q Consensus 307 ~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~l 370 (1422)
..-..+++.+++.++..+.+.+.+..... . -..+.+..|++.++|.+ -|+..+..++
T Consensus 168 SRcq~i~F~pLs~~eL~~~L~~il~~egi-~------id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 168 SRCQHFTFTRLSEAGLEAHLTKVLGREGV-D------YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhccccCCCCHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22257889999999998888876633211 0 12346678899999854 6777665544
No 110
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.0042 Score=74.68 Aligned_cols=178 Identities=15% Similarity=0.111 Sum_probs=100.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc--------------------CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED--------------------FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~--------------------F~~~~wv~~ 218 (1422)
.++||-+..++.+.+++....-... ..|- |+||||+|+.+++..--.. |..++.++.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 4689999999999999976543221 1233 9999999999887542111 111233332
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcC-
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTR- 297 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR- 297 (1422)
+....+.++ +++++.+... -..++.-++|+|+|..-.....+.+...+......+++|++|.
T Consensus 96 as~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred cccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 222222221 2222222110 0134556899999977665667766666655445666666554
Q ss_pred ChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 298 DENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 298 ~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
...+.......-..+++++++.++..+.+.+.+-.. ... -..+....|++.++|.+-.+
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~e-gi~------~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 159 HHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEE-NVE------FENAALDLLARAANGSVRDA 217 (509)
T ss_pred hHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCcHHHH
Confidence 333333332222567899999988777666555221 111 12234577888888877443
No 111
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.03 E-value=0.005 Score=75.13 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=103.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhc-
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESIT- 236 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~- 236 (1422)
..+||.+..++.+.+.+..+.-... ..|- |+||||+|+.+++...... +. ...+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCC
Confidence 4689999999999988876433221 1222 9999999999987543211 10 001111111122111000
Q ss_pred ----CCCCCCCChhHHH---HHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEE-cCChHHHHhhCC
Q 000559 237 ----LSSCDFKDLNPVQ---VKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVT-TRDENVALTLGC 307 (1422)
Q Consensus 237 ----~~~~~~~~~~~~~---~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvT-tR~~~v~~~~~~ 307 (1422)
........+++.. ..+... ..+++-++|+|++..-.....+.+...+.......++|++ |....+.....+
T Consensus 89 D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 89 DLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred CceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh
Confidence 0000001122222 111111 2356679999999776666677776665543345555554 444444433322
Q ss_pred CCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 308 PGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 308 ~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
.-..+.+.+++.++..+.+.+.+-.. ... -..+....|++.++|.+-.+..
T Consensus 169 RC~~~~f~~Ls~~ei~~~L~~il~~e-~i~------~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 169 RCLQFHLKALDVEQIRQQLEHILQAE-QIP------FEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hheEeeCCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 22678999999999988887765221 110 2234557899999997754433
No 112
>PTZ00202 tuzin; Provisional
Probab=97.02 E-value=0.0038 Score=70.15 Aligned_cols=160 Identities=13% Similarity=0.149 Sum_probs=91.3
Q ss_pred CCCCcccccchhHHHHHHHhcCCCCCCC-cccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHH
Q 000559 159 ATEPAVYGRDGDKAKVLDMVLSHDTNND-DVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILE 233 (1422)
Q Consensus 159 ~~~~~~vGr~~~~~~i~~~l~~~~~~~~-~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 233 (1422)
.+...|+||+++..++...|.+.+.... ++.| |.|||||++.+..... + ...+++.. +..++++.++.
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~---~-~qL~vNpr---g~eElLr~LL~ 331 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG---M-PAVFVDVR---GTEDTLRSVVK 331 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC---c-eEEEECCC---CHHHHHHHHHH
Confidence 3456899999999999999965443322 2223 9999999999997643 1 13333333 56899999999
Q ss_pred HhcCCCCCCCChhHHHHHHHHHh-----c-cceeEEEeccCCCCC-ccchhhhhccCCCCCCCcEEEEEcCChHHHHh--
Q 000559 234 SITLSSCDFKDLNPVQVKLKQEV-----A-GRKFLIVLDDVWSKN-YGLWEVLKSPFMAGAPGSKIIVTTRDENVALT-- 304 (1422)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~-~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~-- 304 (1422)
+++.+.. ....++...|.+.+ . +++.+||+-=-...+ .-.+.+.. .+.....-|.|++----+..-..
T Consensus 332 ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 332 ALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcc
Confidence 9996422 22233434444433 2 566777763221110 01111111 12223345777775443332111
Q ss_pred hCCCCceeeCCCCChhhHHHHHHH
Q 000559 305 LGCPGECHNLELLSDNDCWSVFKK 328 (1422)
Q Consensus 305 ~~~~~~~~~l~~l~~~~~~~lf~~ 328 (1422)
.-..-..|.+..++.++|.+.-.+
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhh
Confidence 111125678889999988765543
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.01 E-value=0.01 Score=69.66 Aligned_cols=181 Identities=13% Similarity=0.120 Sum_probs=101.7
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccc---cCC-----------------cEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVE---DFN-----------------SRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~---~F~-----------------~~~wv~~ 218 (1422)
..++|.++.++.+.+++..+...... .|- |+||||+|+.++...... .+. ..++++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~ 93 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDA 93 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeec
Confidence 35799999999999988654332111 233 999999998887653211 011 1222222
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD 298 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 298 (1422)
+...... -.+++.+.+... -..+++-++|+|++..-.....+.+...+......+.+|++|.+
T Consensus 94 ~~~~~~~-~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 94 ASNNGVD-DIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE 156 (355)
T ss_pred cccCCHH-HHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC
Confidence 2111111 112222222100 01244558899998654444566666666544456676666654
Q ss_pred hH-HHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 299 EN-VALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 299 ~~-v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
.. +..........+++.++++++..+.+...+-...- . --.+.+..+++.++|.|-.+...
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~------i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-K------IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHHcCCChHHHHHH
Confidence 43 33333222257888999999988888877632111 1 12356788899999988655443
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.0066 Score=74.14 Aligned_cols=193 Identities=15% Similarity=0.126 Sum_probs=105.4
Q ss_pred CCcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CC--cEEEEEEcCcccHHHHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FN--SRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~--~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
-..++|.+..++.+.+++..+...... .|. |+||||+|+.+++...... .. ...|-.+.. -.-.+.|...
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C~~i~~g 98 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHCQAIMEG 98 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHHHHHhcC
Confidence 347899999999999998765432211 234 9999999999987543111 10 000000000 0111111111
Q ss_pred hcCC-----CCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE-EcCChHHHH
Q 000559 235 ITLS-----SCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV-TTRDENVAL 303 (1422)
Q Consensus 235 l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv-TtR~~~v~~ 303 (1422)
-... ......+++..+.+ +.+ .+++-++|+|++..-.....+.+...+..-..++++|+ ||....+..
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCceEEecccccCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 1100 00111222222211 111 24455789999966655556667666654445566655 445445544
Q ss_pred hhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 304 TLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 304 ~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
.....-..+++..++.++....+.+.+-... .. --.+.+..|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i~------i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-VE------VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 4332236789999999999888887763221 11 1234667889999998765543
No 115
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.99 E-value=0.0059 Score=66.18 Aligned_cols=168 Identities=18% Similarity=0.123 Sum_probs=89.3
Q ss_pred cccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCC
Q 000559 165 YGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSC 240 (1422)
Q Consensus 165 vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 240 (1422)
.|........+..+.........+-+ |+|||+||+.+++.....+. .+.+++...... . +
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~~~------~----~----- 85 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASPLL------A----F----- 85 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHhHH------H----H-----
Confidence 46555544444443332222233333 99999999999986432222 345555433210 0 0
Q ss_pred CCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCC-CCCc-EEEEEcCChHHHH--------hhCCCCc
Q 000559 241 DFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAG-APGS-KIIVTTRDENVAL--------TLGCPGE 310 (1422)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~ 310 (1422)
.. ....-+||+||+.......-+.+...+... ..+. .||+|++...... .+... .
T Consensus 86 -------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~-~ 150 (227)
T PRK08903 86 -------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG-L 150 (227)
T ss_pred -------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC-e
Confidence 01 122347899999543222222333333221 1233 4677766533221 22212 5
Q ss_pred eeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHH
Q 000559 311 CHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLL 370 (1422)
Q Consensus 311 ~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 370 (1422)
.+++.++++++-..++.+.+-. .... --++..+.+++.+.|.+..+..+-..+
T Consensus 151 ~i~l~pl~~~~~~~~l~~~~~~-~~v~------l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 151 VYELKPLSDADKIAALKAAAAE-RGLQ------LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred EEEecCCCHHHHHHHHHHHHHH-cCCC------CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 7899999998777766654421 1111 224567888889999998887666555
No 116
>PF14516 AAA_35: AAA-like domain
Probab=96.99 E-value=0.049 Score=62.30 Aligned_cols=198 Identities=10% Similarity=0.120 Sum_probs=112.1
Q ss_pred CCcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCc-----ccHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-----FDILRISKAI 231 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i 231 (1422)
.+..|.|...-+++.+.+..++ ..+.| .+|||+|..++.+..+..++. ++++++..- .+..+.++.+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 3456788867777777776532 23444 899999999998877644465 457877652 2344455444
Q ss_pred H----HHhcCCCC-------CCCChhHHHHHHHHHh-c--cceeEEEeccCCCCCc--cchhhhhcc---C-CCCC----
Q 000559 232 L----ESITLSSC-------DFKDLNPVQVKLKQEV-A--GRKFLIVLDDVWSKNY--GLWEVLKSP---F-MAGA---- 287 (1422)
Q Consensus 232 ~----~~l~~~~~-------~~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~--~~~~~l~~~---~-~~~~---- 287 (1422)
+ +++..... ...........+.+.+ . +++.+|++|+|+..-. ...+++... + ....
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4 44443321 0112223333444433 2 6899999999965311 111122111 1 1100
Q ss_pred CCc-EE-EEE-cCChHHHHhhCCC---CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 288 PGS-KI-IVT-TRDENVALTLGCP---GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 288 ~gs-~i-lvT-tR~~~v~~~~~~~---~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
... +. ++. |+.......-.++ ...+.|++++.+|...|..++-.. --....++|....||+|.
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----------~~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----------FSQEQLEQLMDWTGGHPY 234 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----------CCHHHHHHHHHHHCCCHH
Confidence 111 12 222 2211111111111 256889999999999998876421 111237899999999999
Q ss_pred HHHHHHHHHhcC
Q 000559 362 AARTLGGLLRCK 373 (1422)
Q Consensus 362 ai~~~~~~l~~~ 373 (1422)
-+..++..+...
T Consensus 235 Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 235 LVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHc
Confidence 999999999764
No 117
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0054 Score=74.99 Aligned_cols=193 Identities=12% Similarity=0.144 Sum_probs=102.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CCcEEEEE-EcCcccHHHHHHHHHHHhc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FNSRAWVC-VSDDFDILRISKAILESIT 236 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~-~s~~~~~~~~~~~i~~~l~ 236 (1422)
..+||.+..+..+.+++..+...... .|- |+||||+|+.+++..-... ++...|-. +...+..-...+.+...-.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~ 95 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTS 95 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCC
Confidence 46899999999998888654332211 122 9999999998886543211 21111211 0011111111111111100
Q ss_pred CC-----CCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE-EEcCChHHHHhhC
Q 000559 237 LS-----SCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII-VTTRDENVALTLG 306 (1422)
Q Consensus 237 ~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~~ 306 (1422)
.. .......+++...+... ..+++-++|+|++..-.....+.+...+..-...+.+| +|++...+.....
T Consensus 96 ~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~ 175 (620)
T PRK14954 96 LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175 (620)
T ss_pred CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH
Confidence 00 00111123333222111 23455578999997665556667777665543455554 4555555554443
Q ss_pred CCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 307 CPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 307 ~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
....++++.+++.++....+.+.+-... .. -..+.+..|++.++|..-
T Consensus 176 SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~------I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 176 SRCQRFNFKRIPLDEIQSQLQMICRAEG-IQ------IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhceEEecCCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHhCCCHH
Confidence 3337899999999998877776553211 11 123467889999998543
No 118
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.0089 Score=75.73 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=102.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHH---
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILES--- 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~--- 234 (1422)
.++||.+..++.|..++......... .|- |+||||+|+.+++...-.. ... ..+..-...+.|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGGPG 87 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCCCC
Confidence 46899999999999998765332211 122 9999999999976643111 100 000000001111100
Q ss_pred ----hcCCCCCCCChhHHHHHHHHH-----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-CChHHHHh
Q 000559 235 ----ITLSSCDFKDLNPVQVKLKQE-----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-RDENVALT 304 (1422)
Q Consensus 235 ----l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~ 304 (1422)
+.........++++.. +++. ..++.-++|+|++.......++.|...+..-...+.+|++| ....+...
T Consensus 88 ~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000001112222222 2111 23555588999997777677777777776554556666554 44455544
Q ss_pred hCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 305 LGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 305 ~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
+...-..|++..++.++..+.+.+.+-. .... -..+....|++.++|.+..+
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~-EGv~------id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQ-EGVP------VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHH-cCCC------CCHHHHHHHHHHcCCCHHHH
Confidence 4433378899999999988877765422 1111 12335577899999977433
No 119
>PRK08727 hypothetical protein; Validated
Probab=96.93 E-value=0.011 Score=63.88 Aligned_cols=139 Identities=19% Similarity=0.114 Sum_probs=80.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||+.+++... +....+.|+++.+ ....+.+ .+ +.+ .+.-+||+||+..
T Consensus 51 G~GKThL~~a~~~~~~-~~~~~~~y~~~~~------~~~~~~~-----------------~~-~~l-~~~dlLiIDDi~~ 104 (233)
T PRK08727 51 GTGKTHLALALCAAAE-QAGRSSAYLPLQA------AAGRLRD-----------------AL-EAL-EGRSLVALDGLES 104 (233)
T ss_pred CCCHHHHHHHHHHHHH-HcCCcEEEEeHHH------hhhhHHH-----------------HH-HHH-hcCCEEEEeCccc
Confidence 9999999999988754 2233566776432 1111111 11 111 2235899999954
Q ss_pred CC-ccchhh-hhccCCC-CCCCcEEEEEcCCh---------HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccc
Q 000559 271 KN-YGLWEV-LKSPFMA-GAPGSKIIVTTRDE---------NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVA 338 (1422)
Q Consensus 271 ~~-~~~~~~-l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~ 338 (1422)
.. ...|.. +...+.. ...|..||+|++.. ++...+... .++++++++.++-.+++.+++... ...
T Consensus 105 l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~-~~~~l~~~~~e~~~~iL~~~a~~~-~l~- 181 (233)
T PRK08727 105 IAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC-IRIGLPVLDDVARAAVLRERAQRR-GLA- 181 (233)
T ss_pred ccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC-ceEEecCCCHHHHHHHHHHHHHHc-CCC-
Confidence 32 122332 2222211 12466799999852 222333332 688999999999999999877432 111
Q ss_pred cccccchHHHHHHHHHHhCCCchHH
Q 000559 339 SSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 339 ~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
--++...-|++.++|-.-++
T Consensus 182 -----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 182 -----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred -----CCHHHHHHHHHhCCCCHHHH
Confidence 23456678888887665444
No 120
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.012 Score=71.49 Aligned_cols=181 Identities=16% Similarity=0.153 Sum_probs=100.6
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc--------------------CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED--------------------FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~--------------------F~~~~wv~~ 218 (1422)
.++||-+..++.+.+++........ ..|- |+||||+|+.++....... |...++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 4689999999999999876443222 1233 9999999999876542110 112223322
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD 298 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 298 (1422)
+....+.+ .+++++..... -..+++-++|+|++..-.....+.+...+......+.+|++|.+
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred cccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 21111111 11222211100 01356679999999766555566666666554445666665543
Q ss_pred -hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch-HHHHH
Q 000559 299 -ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL-AARTL 366 (1422)
Q Consensus 299 -~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 366 (1422)
..+.......-..++++.++.++..+.+.+.+-.. ... -..+.+..|++.++|.+- |+..+
T Consensus 159 ~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e-gi~------~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 159 PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE-NIP------FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322211111568899999999888777655221 111 223456788999999774 44433
No 121
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.89 E-value=0.016 Score=60.88 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=91.0
Q ss_pred CcccccchhHHHHHHHhcCCCCCC---Ccc---cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNN---DDV---NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~---~~v---~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
.+|||.++-++++.=.+.....+. ..| |- |.||||||.-+++...+. +-++.+....-..-+..++..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn-----~k~tsGp~leK~gDlaaiLt~ 100 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN-----LKITSGPALEKPGDLAAILTN 100 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC-----eEecccccccChhhHHHHHhc
Confidence 479999998888876665543322 222 22 999999999999986532 222222111111222333333
Q ss_pred hcCCCC-CCCChhHHHHHHHHHh----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCCC-
Q 000559 235 ITLSSC-DFKDLNPVQVKLKQEV----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCP- 308 (1422)
Q Consensus 235 l~~~~~-~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~- 308 (1422)
+...+- -.++++.+...+.+.| .+-+.=|++.-- ..-..+...+|.+ +=|=.|||.-.+...+...
T Consensus 101 Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~g-----p~Arsv~ldLppF---TLIGATTr~G~lt~PLrdRF 172 (332)
T COG2255 101 LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKG-----PAARSIRLDLPPF---TLIGATTRAGMLTNPLRDRF 172 (332)
T ss_pred CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccC-----CccceEeccCCCe---eEeeeccccccccchhHHhc
Confidence 321110 0111222111111111 122222222111 0001112222222 2233589976554443221
Q ss_pred CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
+-+.+++..+.+|-.+...+.|..- +.. -.++.+.+|+++..|-|-
T Consensus 173 Gi~~rlefY~~~eL~~Iv~r~a~~l-~i~------i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 173 GIIQRLEFYTVEELEEIVKRSAKIL-GIE------IDEEAALEIARRSRGTPR 218 (332)
T ss_pred CCeeeeecCCHHHHHHHHHHHHHHh-CCC------CChHHHHHHHHhccCCcH
Confidence 3567899999999999998887321 111 234578999999999994
No 122
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.88 E-value=0.011 Score=63.72 Aligned_cols=119 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+||||||+.++...+... ..||..|-...-..-.+.|.++-.. ...+.++|..|.+|.|..
T Consensus 172 G~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 172 GTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHHHHHHH---------------HHhhhcceeEEEeHHhhh
Confidence 9999999999998765332 4577776654444444555544321 123467899999999955
Q ss_pred CCccchhhhhccCCCCCCCcEEEE--EcCChHHH--HhhCCCCceeeCCCCChhhHHHHHHHhh
Q 000559 271 KNYGLWEVLKSPFMAGAPGSKIIV--TTRDENVA--LTLGCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~gs~ilv--TtR~~~v~--~~~~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
-+..+-+.+ +|.-.+|.-++| ||.+.... ..+-..=.++.++.|+.++-..++.+..
T Consensus 234 FNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 234 FNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 432222222 455556777776 77775532 1111111688999999999999888744
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.86 E-value=0.016 Score=69.01 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=91.9
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|+|||+|++.+++...... -..+++++ ..++...+...+.... .....+++.++ +.-+||+||+.
T Consensus 151 G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~dvLiIDDiq 216 (450)
T PRK14087 151 GMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-QNDVLIIDDVQ 216 (450)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cCCEEEEeccc
Confidence 9999999999998543222 12345553 3456666666664211 11223444443 34488899996
Q ss_pred CCCc-cch-hhhhccCCC-CCCCcEEEEEcCCh---------HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 270 SKNY-GLW-EVLKSPFMA-GAPGSKIIVTTRDE---------NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 270 ~~~~-~~~-~~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
.... ..+ +.+...+.. ...|..||+|+... .+...+.+. -+..+++++.++-.+++.+++-... ..
T Consensus 217 ~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G-l~~~L~~pd~e~r~~iL~~~~~~~g-l~ 294 (450)
T PRK14087 217 FLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG-LSIAIQKLDNKTATAIIKKEIKNQN-IK 294 (450)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC-ceeccCCcCHHHHHHHHHHHHHhcC-CC
Confidence 5421 112 333333221 12345788887542 233333333 6788999999999999998884321 10
Q ss_pred ccccccchHHHHHHHHHHhCCCchHHHHHH
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGLPLAARTLG 367 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 367 (1422)
.. -.+++..-|++.++|.|-.+..+.
T Consensus 295 -~~---l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 295 -QE---VTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred -CC---CCHHHHHHHHHccCCCHHHHHHHH
Confidence 01 234677889999999887765544
No 124
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.82 E-value=0.0088 Score=61.62 Aligned_cols=67 Identities=22% Similarity=0.211 Sum_probs=41.6
Q ss_pred cEEEEEcCChHHHHhhCCC-CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 290 SKIIVTTRDENVALTLGCP-GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 290 s~ilvTtR~~~v~~~~~~~-~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
+-|=.|||...+...+... +-+.+++..+.+|-.++..+.|-...- + -.++.+.+|++.+.|-|--.
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~---i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----E---IDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----E---E-HHHHHHHHHCTTTSHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----C---cCHHHHHHHHHhcCCChHHH
Confidence 3445689986665544433 234589999999999999887733211 1 23467899999999999433
No 125
>PRK09087 hypothetical protein; Validated
Probab=96.81 E-value=0.012 Score=62.96 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=59.6
Q ss_pred EEEeccCCCCC--ccchhhhhccCCCCCCCcEEEEEcCC---------hHHHHhhCCCCceeeCCCCChhhHHHHHHHhh
Q 000559 262 LIVLDDVWSKN--YGLWEVLKSPFMAGAPGSKIIVTTRD---------ENVALTLGCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 262 LlVlDdv~~~~--~~~~~~l~~~~~~~~~gs~ilvTtR~---------~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
+|++||+.... ++.+-.+...+. ..|..||+|++. ++....+... .++++++++.++-.+++.+++
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g-l~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA-TVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC-ceeecCCCCHHHHHHHHHHHH
Confidence 78889995431 122222222222 236789999873 3344444444 789999999999999999888
Q ss_pred hcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 331 FASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
-. .... --+++..-|++.+.|..-++..
T Consensus 167 ~~-~~~~------l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 AD-RQLY------VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HH-cCCC------CCHHHHHHHHHHhhhhHHHHHH
Confidence 33 2111 2245777888888887776654
No 126
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.00036 Score=72.70 Aligned_cols=200 Identities=14% Similarity=0.075 Sum_probs=120.6
Q ss_pred CCCCCccceEEeccCCCch--hhhHhhcchhhHHHHHHhcccccccccccccCCcccceEeccCCCCC-cccCCCCCCCC
Q 000559 1143 GKLPEALQYLSIADCPQLE--SIAESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSL-VSFPDERLPNQ 1219 (1422)
Q Consensus 1143 ~~~~~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~~ 1219 (1422)
+...+.+++++|.+|.+.. .+...+.+++.|++|+++.|+....+...--.+.+|+.|-|.+-... .........+|
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3344578899999997653 33455678899999999998776544332234668899988875432 22222344567
Q ss_pred CCcEEEEecCCCCCcC---ccccCCCCccceeecccc--------cCCCCCCccccccccccccC--cccccccCcCCCc
Q 000559 1220 NLRVIEISRCEELRPL---PSGVERLNSLQELDISLC--------IPASGLPTNLTSLSIEDLKM--PLSCWGLHKLTSL 1286 (1422)
Q Consensus 1220 ~L~~L~l~~n~~l~~~---p~~~~~l~~L~~L~ls~n--------~~~~~lp~~L~~L~l~~~~~--~~~~~~l~~l~~L 1286 (1422)
.++.|+++.|..-... ...-..-+.+.+|....| ...+.+.+++..+.+..+.. ...+.+...++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 7888888887432211 001112235556666555 22334445676666666543 2334456667788
Q ss_pred ceEEecCCCCCcccccccccccCCccccceeccccccccCCCcCC-----CCCCCcccceecc
Q 000559 1287 RKLEIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRG-----FQNLTSLEYLSIS 1344 (1422)
Q Consensus 1287 ~~L~L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-----~~~l~~L~~L~l~ 1344 (1422)
.-|+|+.+ .+.+..... +...+++|..|.+++++....+.... ++.|++++.|+=+
T Consensus 227 ~~LnL~~~-~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 227 SCLNLGAN-NIDSWASVD-ALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhhhhccc-ccccHHHHH-HHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 88888774 344433211 34457889999999988777665221 4567777777644
No 127
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.78 E-value=0.016 Score=62.77 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||+.+++..... -..+.++++..... ...+ +.+.+.. --+|++||+..
T Consensus 55 G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~--------------------~~~~----~~~~~~~-~dlliiDdi~~ 108 (235)
T PRK08084 55 GAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW--------------------FVPE----VLEGMEQ-LSLVCIDNIEC 108 (235)
T ss_pred CCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh--------------------hhHH----HHHHhhh-CCEEEEeChhh
Confidence 999999999999864322 23456666533100 0011 1111111 23789999955
Q ss_pred CC-ccchhhh-hccCCC-CCCC-cEEEEEcCCh---------HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 271 KN-YGLWEVL-KSPFMA-GAPG-SKIIVTTRDE---------NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 271 ~~-~~~~~~l-~~~~~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
.. ...|+.. ...+.. ...| .++|+||+.. +....+.+. .++++++++.++-.+.+.+++.. ....
T Consensus 109 ~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g-~~~~l~~~~~~~~~~~l~~~a~~-~~~~ 186 (235)
T PRK08084 109 IAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG-QIYKLQPLSDEEKLQALQLRARL-RGFE 186 (235)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC-ceeeecCCCHHHHHHHHHHHHHH-cCCC
Confidence 32 1344432 122211 1123 4799999754 333444443 78999999999999998876632 1111
Q ss_pred ccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
-.+++..-|++.+.|-.-++..+
T Consensus 187 ------l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 187 ------LPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred ------CCHHHHHHHHHhhcCCHHHHHHH
Confidence 23467788888888766555443
No 128
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.023 Score=64.11 Aligned_cols=172 Identities=17% Similarity=0.130 Sum_probs=101.1
Q ss_pred CCCcccccchhHHHHHHHhcCCCCCC--Ccccc----cccHHHHHHHHhcccccccCC-cEEEEEEcCcccHHHHHHHHH
Q 000559 160 TEPAVYGRDGDKAKVLDMVLSHDTNN--DDVNF----RVGKTTLARLVYNDLAVEDFN-SRAWVCVSDDFDILRISKAIL 232 (1422)
Q Consensus 160 ~~~~~vGr~~~~~~i~~~l~~~~~~~--~~v~i----GvGKTtLa~~v~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~ 232 (1422)
....++||+.|++.+.+++...-... +-+.| |.|||.+...++.+.....=. .+++++...-....+++..|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 45679999999999999987643221 33333 999999999999986532212 456776665456677777777
Q ss_pred HHhcCCCCCCCChhHHHHHHHHHhccc--eeEEEeccCCCCCccchhhhhccCCC-CCCCcEEEEE---------cCChH
Q 000559 233 ESITLSSCDFKDLNPVQVKLKQEVAGR--KFLIVLDDVWSKNYGLWEVLKSPFMA-GAPGSKIIVT---------TRDEN 300 (1422)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~gs~ilvT---------tR~~~ 300 (1422)
..+...........+..+.+.++..+. -+++|+|..+.-.-..-+.+...|.+ .-+++|+|+- -|---
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 777221111111144455566666543 68999998843210111122222222 2255666542 12110
Q ss_pred -HHHhhCCCCceeeCCCCChhhHHHHHHHhhh
Q 000559 301 -VALTLGCPGECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 301 -v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
+-...+.....+..++.+.++-.++|..+.-
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 0111223346778899999999999998873
No 129
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.74 E-value=0.0035 Score=70.79 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=54.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc--ccHHHHHHHHHHHhcCCCCCCCChh------HHHHHHHHH-hcccee
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD--FDILRISKAILESITLSSCDFKDLN------PVQVKLKQE-VAGRKF 261 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~l~~~-l~~k~~ 261 (1422)
|.|||||++.+++......|+..+||.+.+. .++.++++.+...+-....+..... ...+..++. -.++++
T Consensus 178 g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdV 257 (415)
T TIGR00767 178 KAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 257 (415)
T ss_pred CCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 9999999999999877555999999999865 7899999999654433332221111 111122222 258999
Q ss_pred EEEeccCC
Q 000559 262 LIVLDDVW 269 (1422)
Q Consensus 262 LlVlDdv~ 269 (1422)
+|++|.+.
T Consensus 258 VLlIDEit 265 (415)
T TIGR00767 258 VILLDSIT 265 (415)
T ss_pred EEEEEChh
Confidence 99999993
No 130
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.018 Score=70.90 Aligned_cols=190 Identities=14% Similarity=0.158 Sum_probs=100.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc----CCcE-EE-EEEcCcccHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED----FNSR-AW-VCVSDDFDILRISKAIL 232 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~----F~~~-~w-v~~s~~~~~~~~~~~i~ 232 (1422)
..++|.+..++.+.+++..+..... ..|- |+||||+|+.++...-... +..+ .- .+....+++.+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie------ 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE------ 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE------
Confidence 4688999999999999976533221 1233 9999999999876432111 0000 00 00000011000
Q ss_pred HHhcCCC-CCCCChhHHHHHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEE-EEEcCChHHHHhhCCCC
Q 000559 233 ESITLSS-CDFKDLNPVQVKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKI-IVTTRDENVALTLGCPG 309 (1422)
Q Consensus 233 ~~l~~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~i-lvTtR~~~v~~~~~~~~ 309 (1422)
+.... ....++.++.+.+... ..+++-++|+|++.......+..+...+........+ ++|++...+.......-
T Consensus 92 --idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc 169 (725)
T PRK07133 92 --MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV 169 (725)
T ss_pred --EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc
Confidence 00000 0001111222211111 1356668999999766556677776665443334444 45555555554433222
Q ss_pred ceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch-HHHHH
Q 000559 310 ECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL-AARTL 366 (1422)
Q Consensus 310 ~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 366 (1422)
..+++.+++.++..+.+...+-... .. -..+.+..|++.++|-+- |+..+
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~keg-I~------id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKEN-IS------YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6789999999998888877552211 11 123456789999988664 44433
No 131
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0071 Score=74.86 Aligned_cols=192 Identities=15% Similarity=0.145 Sum_probs=104.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
..+||.+..++.+..++........ ..|- |+||||+|+.+++.......+. -...++.....+.+.......
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~-----~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP-----KGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCccCHHHHHHhcCCCCe
Confidence 4689999999999888876432211 1222 9999999999986542111000 001111122223332221110
Q ss_pred -----CCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcC-ChHHHHhhCC
Q 000559 239 -----SCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTR-DENVALTLGC 307 (1422)
Q Consensus 239 -----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR-~~~v~~~~~~ 307 (1422)
.......++..+ +.+.+ .+++-++|+|++..-.....+.+...+......+.+|++|. ...+......
T Consensus 91 ~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 91 VIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred EEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh
Confidence 001112222221 11211 24566899999965544556666666554444566666554 3444433322
Q ss_pred CCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 308 PGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 308 ~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
....+.++.++.++....+.+.+.... .. -..+.+..|++.++|.+-.+...
T Consensus 170 R~~~i~f~~l~~~el~~~L~~~a~~eg-l~------i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 170 RCQRFDFHRHSVADMAAHLRKIAAAEG-IN------LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 235788899999998888877763221 11 12356788999999988655433
No 132
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.016 Score=70.40 Aligned_cols=194 Identities=15% Similarity=0.125 Sum_probs=104.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHH---
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILES--- 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~--- 234 (1422)
..+||.+..++.+.+++..+..... ..|- |+||||+|+.+++...-.. .+ + ..++.-...+.+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPNGPG 85 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhcccCC
Confidence 4689999999999999876432211 1122 9999999999986543111 10 0 000000111111100
Q ss_pred ----hcCCCCCCCChhH---HHHHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE-EEcCChHHHHhh
Q 000559 235 ----ITLSSCDFKDLNP---VQVKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII-VTTRDENVALTL 305 (1422)
Q Consensus 235 ----l~~~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~ 305 (1422)
+.........+++ +...+... ..+++-++|+|++..-.....+.+...+........+| +||....+....
T Consensus 86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 0000000111222 22122111 12455688999997666666777766665544455555 455555555444
Q ss_pred CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch-HHHHHHHH
Q 000559 306 GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL-AARTLGGL 369 (1422)
Q Consensus 306 ~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~ 369 (1422)
......+++..++.++..+.+.+.+-... .. -..+.+..|++..+|-+- |+..+-.+
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~------i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEG-VV------VDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33336789999999998888876653211 11 123455778889998763 44444433
No 133
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.61 E-value=0.016 Score=67.70 Aligned_cols=174 Identities=14% Similarity=0.103 Sum_probs=92.6
Q ss_pred CCCcccccchhHHHHHHHhcCCCCC-----------CCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccH
Q 000559 160 TEPAVYGRDGDKAKVLDMVLSHDTN-----------NDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDI 224 (1422)
Q Consensus 160 ~~~~~vGr~~~~~~i~~~l~~~~~~-----------~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~ 224 (1422)
....+.|+++.+++|.+.+...-.. .+.+-+ |+|||++|+.+++..... | +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~-~-----~~v~~---- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-F-----IRVVG---- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC-E-----Eecch----
Confidence 3457899999999999887432110 111222 999999999999875421 2 22211
Q ss_pred HHHHHHHHHHhcCCCCCCCChhHHHHHHHHHh-ccceeEEEeccCCCCC-----------cc---chhhhhccCC--CCC
Q 000559 225 LRISKAILESITLSSCDFKDLNPVQVKLKQEV-AGRKFLIVLDDVWSKN-----------YG---LWEVLKSPFM--AGA 287 (1422)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~~~--~~~ 287 (1422)
..+.... ++ ........+.+.. ...+.+|++||++.-. .. .+..+...+. ...
T Consensus 190 ~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 1111110 00 0111111122222 2456899999996421 00 1222222221 112
Q ss_pred CCcEEEEEcCChHHHHh-h---CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 288 PGSKIIVTTRDENVALT-L---GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 288 ~gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
.+.+||.||........ . +-.+..+.+...+.++..++|..++....-.. .- . ...+++.+.|..-
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~---~----~~~la~~t~g~sg 329 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DV---D----LEAIAKMTEGASG 329 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cC---C----HHHHHHHcCCCCH
Confidence 46788888876433211 1 11236788999999999999998874432111 01 1 3567777777653
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.55 E-value=0.021 Score=60.89 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=94.1
Q ss_pred ccccc-chhHHHHHHHhcCCCCC-CCcccc----cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 163 AVYGR-DGDKAKVLDMVLSHDTN-NDDVNF----RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 163 ~~vGr-~~~~~~i~~~l~~~~~~-~~~v~i----GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
-++|. .+..-...+.+...... ...+-| |+|||.|.+++++...... =..+++++ ..++...+...+
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~ 83 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADAL 83 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHH
Confidence 34564 33344455555444222 123333 9999999999998764322 22456663 445566666666
Q ss_pred cCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCc-cchhh-hhccCCC-CCCCcEEEEEcCCh---------HHHH
Q 000559 236 TLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNY-GLWEV-LKSPFMA-GAPGSKIIVTTRDE---------NVAL 303 (1422)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-~~~~~-l~~~~~~-~~~gs~ilvTtR~~---------~v~~ 303 (1422)
.. ... ..+++.++ .-=+|++||++.-.. ..|.+ +...+.. ...|.+||+|++.. +...
T Consensus 84 ~~-----~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S 153 (219)
T PF00308_consen 84 RD-----GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS 153 (219)
T ss_dssp HT-----TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH
T ss_pred Hc-----ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh
Confidence 43 112 23444444 344788999966422 22322 2222211 12467899999642 3334
Q ss_pred hhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHH
Q 000559 304 TLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAAR 364 (1422)
Q Consensus 304 ~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 364 (1422)
.+... -++++++.+.++-.+++.++|... ... --+++++-|++.+.+..-.+.
T Consensus 154 Rl~~G-l~~~l~~pd~~~r~~il~~~a~~~-~~~------l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 154 RLSWG-LVVELQPPDDEDRRRILQKKAKER-GIE------LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHCS-EEEEE----HHHHHHHHHHHHHHT-T--------S-HHHHHHHHHHTTSSHHHHH
T ss_pred hHhhc-chhhcCCCCHHHHHHHHHHHHHHh-CCC------CcHHHHHHHHHhhcCCHHHHH
Confidence 44333 678999999999999999888432 111 223566667777766554443
No 135
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.019 Score=70.85 Aligned_cols=177 Identities=13% Similarity=0.159 Sum_probs=102.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccc---------------------c-CCcEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVE---------------------D-FNSRAWV 216 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~---------------------~-F~~~~wv 216 (1422)
..++|.+..++.+.+++..+.-.... .|- |+||||+|+.++...... . |+ +..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEe
Confidence 46899999999999998764322111 122 999999998877643210 0 22 1222
Q ss_pred EEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE-E
Q 000559 217 CVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV-T 295 (1422)
Q Consensus 217 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv-T 295 (1422)
+.+....+.+ .+++++++.... ..+++-++|+|++..-....++.+...+..-..++.+|+ |
T Consensus 96 d~~~~~~vd~-Ir~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 96 DAASNNSVDD-IRNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cccccCCHHH-HHHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 2221111111 111222211100 123455889999977665667777777665444566555 5
Q ss_pred cCChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 296 TRDENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 296 tR~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
|+...+.........++++.+++.++....+.+.+-.. ... -..+.+..|++.++|-.--+
T Consensus 159 t~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e-gi~------i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 159 TEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE-GIT------AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHH
Confidence 55555555443333778999999999988887766321 111 12345688999999866433
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.54 E-value=0.012 Score=67.70 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=78.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
..++|.++..+.+..++..+...... .|- |+||||+|+.+++... . ....++.+. .... ..++.+..+...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~---~-~~~~i~~~~-~~~~-~i~~~l~~~~~~ 94 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG---A-EVLFVNGSD-CRID-FVRNRLTRFAST 94 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---c-cceEeccCc-ccHH-HHHHHHHHHHHh
Confidence 46899999999999998754322211 133 9999999999988642 1 123444443 1211 111211111100
Q ss_pred CCCCCChhHHHHHHHHHhccceeEEEeccCCCC-CccchhhhhccCCCCCCCcEEEEEcCChH-HHHhhCCCCceeeCCC
Q 000559 239 SCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMAGAPGSKIIVTTRDEN-VALTLGCPGECHNLEL 316 (1422)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~ 316 (1422)
..+.+.+-++|+||+... ..+..+.+...+.....++++|+||.... +.......-..+.++.
T Consensus 95 ---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~ 159 (316)
T PHA02544 95 ---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGV 159 (316)
T ss_pred ---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCC
Confidence 001134557899999654 21222334433444445778999886543 1122211114566667
Q ss_pred CChhhHHHHHHH
Q 000559 317 LSDNDCWSVFKK 328 (1422)
Q Consensus 317 l~~~~~~~lf~~ 328 (1422)
.+.++..+++..
T Consensus 160 p~~~~~~~il~~ 171 (316)
T PHA02544 160 PTKEEQIEMMKQ 171 (316)
T ss_pred CCHHHHHHHHHH
Confidence 777776665544
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.04 Score=66.00 Aligned_cols=178 Identities=14% Similarity=0.135 Sum_probs=98.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccc---cc-----------------CCcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAV---ED-----------------FNSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~---~~-----------------F~~~~wv~~ 218 (1422)
..++|.+..+..+.+++......... .|- |+||||+|+.++....- .. |...++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 36889999999999999764332211 233 99999999998765321 00 111222222
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE-Ec
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV-TT 296 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv-Tt 296 (1422)
+....+. +...+...+... ..+++-++|+|++..-.....+.+...+........+|+ ||
T Consensus 96 as~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 96 ASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred ccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 1111111 111111111111 135567999999966544556666665554434455554 44
Q ss_pred CChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHH
Q 000559 297 RDENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAAR 364 (1422)
Q Consensus 297 R~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 364 (1422)
+...+..........+.+.+++.++....+.+.+-... .. -..+.+..|++.++|.+-.+.
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~------id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IE------YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHHH
Confidence 54444433322225788999999998888877663211 11 223456778888988765443
No 138
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.46 E-value=0.011 Score=64.77 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=98.3
Q ss_pred CCcccccchhHHHHHHHhcCCCCCC-Ccc---cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNN-DDV---NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~-~~v---~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
++.+.+|+.....+...+...++.. ..| |. |.|||.+.+++.+.... ..+|+++-+.+..+-++..|+.+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC----cceeeehHHhccHHHHHHHHHHHh
Confidence 5678899999999999887765522 111 22 99999999999988643 368999999999999999999999
Q ss_pred cCCCCCCCChh-------HHHHHHHHH--hc--cceeEEEeccCCCCCccchhhh--------hccCCCCCCCcEEEEEc
Q 000559 236 TLSSCDFKDLN-------PVQVKLKQE--VA--GRKFLIVLDDVWSKNYGLWEVL--------KSPFMAGAPGSKIIVTT 296 (1422)
Q Consensus 236 ~~~~~~~~~~~-------~~~~~l~~~--l~--~k~~LlVlDdv~~~~~~~~~~l--------~~~~~~~~~gs~ilvTt 296 (1422)
+..+.+....+ .....+.++ .. ++.++||||+++.- .+.+.+ ...+ ..+ .-+|+++
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~--~~~-~i~iils 155 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELL--NEP-TIVIILS 155 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHh--CCC-ceEEEEe
Confidence 63322222221 222233331 22 46899999999553 222221 1111 112 2334443
Q ss_pred CChHHHH---hhCCC-CceeeCCCCChhhHHHHHHHh
Q 000559 297 RDENVAL---TLGCP-GECHNLELLSDNDCWSVFKKH 329 (1422)
Q Consensus 297 R~~~v~~---~~~~~-~~~~~l~~l~~~~~~~lf~~~ 329 (1422)
--.-... .+|+. ..++....-+.+|-.+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3222221 13433 134567788888888888653
No 139
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.43 E-value=0.0012 Score=81.79 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=77.3
Q ss_pred hHHHhcCCCcccEEEecccccC--ccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccc--cccc
Q 000559 560 LSEVLSKFKKLRVLSLRNYYIT--EVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLP--TNVE 635 (1422)
Q Consensus 560 ~~~~~~~~~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP--~~i~ 635 (1422)
+...-..+|.||.|.+++-.+. ++-.-..++++|+.||+|+++|+.+ ..+++|+|||+|-+.+ -....-+ .++.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHh
Confidence 4445567899999999886653 3334456889999999999999999 6799999999999986 3333222 3568
Q ss_pred cccccCeEeecCCCcccc--cc----ccccccccccccceeEe
Q 000559 636 NLIDLLYFDISGQNLITE--MP----VGMNKLKCLLTLSNFVV 672 (1422)
Q Consensus 636 ~L~~L~~L~l~~~~~~~~--~p----~~i~~L~~L~~L~~~~~ 672 (1422)
+|++|++||+|....... +. +.-..|++|+.|+.+..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 999999999997652211 11 11223566666665533
No 140
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.035 Score=66.48 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=101.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc---C-----------------CcEEEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED---F-----------------NSRAWVCV 218 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~---F-----------------~~~~wv~~ 218 (1422)
..+||-+..++.+...+..+.-... ..|- |+||||+|+.+++..--.. + ..+++++.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 4689999999999998865432211 1122 9999999998776431110 0 01122221
Q ss_pred cCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE
Q 000559 219 SDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV 294 (1422)
Q Consensus 219 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv 294 (1422)
+... ..++....+... ..+++-++|+|++.....+..+.+...+......+++|+
T Consensus 94 as~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 94 ASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred cccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 1111 122222222110 124566889999977666666667666654445677776
Q ss_pred EcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 295 TTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 295 TtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
+|.+. .+..........+++.+++.++..+.+.+.+-.. ... -..+.+..|++.++|.+--+..
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E-Gi~------i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKE-GVS------YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCcHHHHHH
Confidence 66553 2322222223678999999999888877665321 111 2235678899999998854433
No 141
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.42 E-value=0.034 Score=65.29 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=96.2
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccc-------cCCc-EEEEEEcCcccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVE-------DFNS-RAWVCVSDDFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~-------~F~~-~~wv~~s~~~~~~~~~~~ 230 (1422)
.+++|.+...+.+.+.+..+...... .|- |+||||+|+.+++..... .|.. ++-++......+ +..++
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-DDIRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-HHHHH
Confidence 35789999999999999764332111 233 999999999997754321 1211 111111111111 11112
Q ss_pred HHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-CChHHHHhhCCCC
Q 000559 231 ILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-RDENVALTLGCPG 309 (1422)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~~~~~ 309 (1422)
+++++... -..+++-++|+|++.......++.+...+......+.+|++| +...+........
T Consensus 96 l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 96 LIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred HHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc
Confidence 22221100 012345579999996554445666655554333345555554 4333333322222
Q ss_pred ceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 310 ECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 310 ~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
.+++.+++++++....+...+....- . -..+.+..+++.++|-+-
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~-~------i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGI-K------FEDDALHIIAQKADGALR 204 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHhCCCCHH
Confidence 57899999999988888877633211 1 123567788888888554
No 142
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.036 Score=65.97 Aligned_cols=179 Identities=14% Similarity=0.109 Sum_probs=99.0
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc----------------------CCcEEEE
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED----------------------FNSRAWV 216 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~----------------------F~~~~wv 216 (1422)
.+++|.+..++.+.+++..+...... .|- |+||||+|+.+++...-.. ++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 46899999999999998764332211 233 9999999998876532110 11 1111
Q ss_pred EEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEE
Q 000559 217 CVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVT 295 (1422)
Q Consensus 217 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvT 295 (1422)
.......+. ++.+..+.+... ..+++-++|+|++........+.+...+.....+..+|++
T Consensus 96 ~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 96 DGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred eccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 110111111 111111111110 1255668899999655444556666666554445666666
Q ss_pred cC-ChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc-hHHHHH
Q 000559 296 TR-DENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP-LAARTL 366 (1422)
Q Consensus 296 tR-~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 366 (1422)
|. ...+..........+++.++++++..+.+.+.+-.. ... -..+.+..|++.++|.+ .|+..+
T Consensus 158 t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e-g~~------i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 158 TTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE-GIE------TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 53 333333322222678999999999888887765321 111 22346788999999865 444443
No 143
>PRK05642 DNA replication initiation factor; Validated
Probab=96.34 E-value=0.028 Score=60.73 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=82.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||.||+.+++....+ -..++|+++.+ +... . ..+.+.+++-. +||+||+..
T Consensus 55 G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~d-~LiiDDi~~ 108 (234)
T PRK05642 55 GVGRSHLLQAACLRFEQR-GEPAVYLPLAE------LLDR--------------G----PELLDNLEQYE-LVCLDDLDV 108 (234)
T ss_pred CCCHHHHHHHHHHHHHhC-CCcEEEeeHHH------HHhh--------------h----HHHHHhhhhCC-EEEEechhh
Confidence 999999999998764322 23467776532 1111 0 12223333222 678999954
Q ss_pred CC-ccchhh-hhccCCC-CCCCcEEEEEcCChHH---------HHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccc
Q 000559 271 KN-YGLWEV-LKSPFMA-GAPGSKIIVTTRDENV---------ALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVA 338 (1422)
Q Consensus 271 ~~-~~~~~~-l~~~~~~-~~~gs~ilvTtR~~~v---------~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~ 338 (1422)
.. ...|+. +...+.. ...|.+||+|++...- ...+.. +.++++++++.++-.+.+++++... ...
T Consensus 109 ~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~-gl~~~l~~~~~e~~~~il~~ka~~~-~~~- 185 (234)
T PRK05642 109 IAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTL-ALVFQMRGLSDEDKLRALQLRASRR-GLH- 185 (234)
T ss_pred hcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhc-CeeeecCCCCHHHHHHHHHHHHHHc-CCC-
Confidence 31 134443 3333321 1246689998875332 122222 2678999999999999998776432 111
Q ss_pred cccccchHHHHHHHHHHhCCCchHHHHHHH
Q 000559 339 SSRLCNSEFVRRKVVEKCKGLPLAARTLGG 368 (1422)
Q Consensus 339 ~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 368 (1422)
--+++..-|++.+.|-.-++..+-.
T Consensus 186 -----l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 186 -----LTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred -----CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2246778888888887655544433
No 144
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.34 E-value=0.0006 Score=84.33 Aligned_cols=15 Identities=47% Similarity=0.862 Sum_probs=9.8
Q ss_pred cCCccEEeccCCCCC
Q 000559 1073 LSLLESLDISGCQSL 1087 (1422)
Q Consensus 1073 l~~L~~L~L~~~~~l 1087 (1422)
+++|++|++++|..+
T Consensus 294 ~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGL 308 (482)
T ss_pred cCcccEEeeecCccc
Confidence 445777777776654
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.023 Score=70.08 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=102.8
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
..++|.+..+..+..++......... .|- |+||||+|+.+++.......+... ...+..-+..+.+.......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~----~~~Cg~C~~C~~i~~g~h~D 91 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT----PEPCGKCELCRAIAAGNALD 91 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC----CCCCcccHHHHHHhcCCCcc
Confidence 46889999999999988764321111 122 999999999998765321111000 01111112222222221110
Q ss_pred -----CCCCCChhHHHHHHHHH----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-CChHHHHhhCCC
Q 000559 239 -----SCDFKDLNPVQVKLKQE----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-RDENVALTLGCP 308 (1422)
Q Consensus 239 -----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~~~~ 308 (1422)
.......+...+.+... ..+++-++|+|++..-....++.+...+..-...+.+|++| .-..+.......
T Consensus 92 ~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSR 171 (620)
T PRK14948 92 VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISR 171 (620)
T ss_pred EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhh
Confidence 00111222222222111 12455688999997665566777776665443445555444 433343333222
Q ss_pred CceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
-..+++..++.++....+.+.+-.... . -..+.+..|++.++|.+..+..
T Consensus 172 c~~~~f~~l~~~ei~~~L~~ia~kegi-~------is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 172 CQRFDFRRIPLEAMVQHLSEIAEKESI-E------IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHhCC-C------CCHHHHHHHHHHcCCCHHHHHH
Confidence 256788899998888777766532111 1 1124578899999997754443
No 146
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.23 E-value=0.0023 Score=39.37 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=12.0
Q ss_pred CcceeeecCccccccCccccc
Q 000559 592 HLRYLNFSGTRICHIPESVGF 612 (1422)
Q Consensus 592 ~L~~L~L~~n~i~~lp~~~~~ 612 (1422)
+|++|+|++|+++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666655544
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.19 E-value=0.094 Score=62.37 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=82.6
Q ss_pred cccHHHHHHHHhcccccccC-CcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDF-NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|+|||+||+++++....... ..++++++ .++..++...+... ..+ .+.+.+++ .-+||+||+.
T Consensus 146 G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~~-~dlLiiDDi~ 209 (405)
T TIGR00362 146 GLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYRS-VDLLLIDDIQ 209 (405)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHHh-CCEEEEehhh
Confidence 99999999999987643222 24566643 23344455554321 122 23333333 3488999996
Q ss_pred CCCcc-ch-hhhhccCCC-CCCCcEEEEEcCChH---------HHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 270 SKNYG-LW-EVLKSPFMA-GAPGSKIIVTTRDEN---------VALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 270 ~~~~~-~~-~~l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
..... .+ +.+...+.. ...|..||+|+.... +...+.. +.++.+++.+.++-.+++.+.+-.. ...
T Consensus 210 ~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~-g~~v~i~~pd~~~r~~il~~~~~~~-~~~ 287 (405)
T TIGR00362 210 FLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW-GLVVDIEPPDLETRLAILQKKAEEE-GLE 287 (405)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC-CeEEEeCCCCHHHHHHHHHHHHHHc-CCC
Confidence 53211 11 223222211 113456888876421 1112221 2468899999999999998887432 111
Q ss_pred ccccccchHHHHHHHHHHhCCCchH
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGLPLA 362 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~glPLa 362 (1422)
-.+++...|++.+.|..-.
T Consensus 288 ------l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 288 ------LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred ------CCHHHHHHHHHhcCCCHHH
Confidence 2245677788888876554
No 148
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.11 E-value=0.021 Score=65.93 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=66.4
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcCCC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITLSS 239 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 239 (1422)
..+++.++..+.+...|..... .-..|. |+|||++|+++++...... |+.+.||++++..+..++...+-- ..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~-iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP----~~ 249 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKN-IILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRP----NG 249 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCC-EEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCC----CC
Confidence 4578899999999999875321 111233 9999999999998765444 888999999998876665542211 10
Q ss_pred CCCCChh-HHHHHHHHHhc--cceeEEEeccCCCCC
Q 000559 240 CDFKDLN-PVQVKLKQEVA--GRKFLIVLDDVWSKN 272 (1422)
Q Consensus 240 ~~~~~~~-~~~~~l~~~l~--~k~~LlVlDdv~~~~ 272 (1422)
....-.. ...+.+++.-+ ++++.+|+|++...+
T Consensus 250 vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 250 VGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 0000001 11112222222 468999999996654
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.09 E-value=0.071 Score=59.43 Aligned_cols=124 Identities=12% Similarity=0.054 Sum_probs=66.1
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|.||||+|+.++......+ .....|+.++. .+ +...+.+.. .......+.+ ...-+|++|++.
T Consensus 68 GTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~---a~~gvL~iDEi~ 131 (284)
T TIGR02880 68 GTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKR---AMGGVLFIDEAY 131 (284)
T ss_pred CCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHH---ccCcEEEEechh
Confidence 9999999988776544222 22223554442 11 222222111 1111222222 134689999995
Q ss_pred CC---------CccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCC-------CCceeeCCCCChhhHHHHHHHhh
Q 000559 270 SK---------NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGC-------PGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 270 ~~---------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~-------~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
.- ..+.++.+...+.....+.+||+++-.......... ....+++++++.+|-.+++...+
T Consensus 132 ~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 132 YLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 21 012234455555444456677777654333221111 02568899999999999988876
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.06 E-value=0.033 Score=71.27 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=81.8
Q ss_pred CcccccchhHHHHHHHhcCCCCCC-Ccccc-cccHHHHHHHHhccccc---cc-C-CcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNN-DDVNF-RVGKTTLARLVYNDLAV---ED-F-NSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~-~~v~i-GvGKTtLa~~v~~~~~~---~~-F-~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
..++||+++++++++.|....... -.+|- |+|||++|+.+++.... .. + +..+|. + ++..+.. .
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a----~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA----G 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh----h
Confidence 368999999999999887654322 12344 99999999999987521 11 1 344543 1 1111111 0
Q ss_pred hcCCCCCCCChhHHHHHHHHHh-ccceeEEEeccCCCCC---------ccchhhhhccCCCCCCCcEEEEEcCChHHHH-
Q 000559 235 ITLSSCDFKDLNPVQVKLKQEV-AGRKFLIVLDDVWSKN---------YGLWEVLKSPFMAGAPGSKIIVTTRDENVAL- 303 (1422)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~- 303 (1422)
.. -..+.++....+.+.+ +.++.+|++|++..-. .+.-+.+...+..+ .-++|-+|...+...
T Consensus 253 ---~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~i~~IgaTt~~e~~~~ 326 (731)
T TIGR02639 253 ---TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--KLRCIGSTTYEEYKNH 326 (731)
T ss_pred ---cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--CeEEEEecCHHHHHHH
Confidence 00 0112233333333333 2457899999985321 11122233333221 234444444322211
Q ss_pred -----hhCCCCceeeCCCCChhhHHHHHHHhh
Q 000559 304 -----TLGCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 304 -----~~~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
.....-..+.+++++.++..+++....
T Consensus 327 ~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 327 FEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111112568899999999999998655
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.089 Score=64.25 Aligned_cols=188 Identities=17% Similarity=0.127 Sum_probs=101.6
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
..++|-+..++.+..++......... .|- |+||||+|+.+++..-... ... ..+...++. +++...-..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~~~ 88 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDNSL 88 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCCCC
Confidence 46899999999999999764322111 122 9999999999987643111 100 000111111 111110000
Q ss_pred -----CCCCCCChhHHHHHH---HHH-hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-CChHHHHhhCC
Q 000559 238 -----SSCDFKDLNPVQVKL---KQE-VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-RDENVALTLGC 307 (1422)
Q Consensus 238 -----~~~~~~~~~~~~~~l---~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~~~ 307 (1422)
........++..... ... ..+++-++|+|++..-....++.+...+......+.+|.+| ....+......
T Consensus 89 dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred CeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 000011122222111 111 23556689999997665566777777666544556666555 43444433332
Q ss_pred CCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 308 PGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 308 ~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
....++..+++.++..+.+.+.+....- . -..+.+..|++.++|.+-.+
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi-~------id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQI-K------YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCC-C------CCHHHHHHHHHHcCCCHHHH
Confidence 2256889999999888888776633211 1 22356677889999877544
No 152
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.038 Score=68.06 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=98.7
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
..+||.+..+..+.+++........ ..|- |+||||+|+.+++..--.. .+. ..++.-...++|...-..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCCCC
Confidence 4689999999999998876432211 1122 9999999998876532111 100 000000111111100000
Q ss_pred -----CCCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEE-EEcCChHHHHhhC
Q 000559 238 -----SSCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKII-VTTRDENVALTLG 306 (1422)
Q Consensus 238 -----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~~~ 306 (1422)
.......+++. ..+.+.+ .+++-++|+|++..-.....+.+...+......+.+| +||....+.....
T Consensus 89 d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 89 DVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred CeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 00000111121 1122221 2445578899996655555666666665433455555 4555555554443
Q ss_pred CCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc-hHHHHH
Q 000559 307 CPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP-LAARTL 366 (1422)
Q Consensus 307 ~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 366 (1422)
..-..+++..++.++....+...+-.. ... -..+.+..|++.++|.. .|+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~e-gi~------i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQE-GIS------ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHh-CCC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222678889999988877776654221 111 12345677888888865 444444
No 153
>CHL00181 cbbX CbbX; Provisional
Probab=96.00 E-value=0.12 Score=57.68 Aligned_cols=125 Identities=12% Similarity=0.069 Sum_probs=66.7
Q ss_pred cccHHHHHHHHhcccccccC-CcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDF-NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|+||||+|+.+++.....++ ...-|+.++.. + +.....+.. .......+.+. ..-+|++|++.
T Consensus 69 GtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a---~ggVLfIDE~~ 132 (287)
T CHL00181 69 GTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKA---MGGVLFIDEAY 132 (287)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHc---cCCEEEEEccc
Confidence 99999999999876432222 22235555421 2 222221111 11111222221 23599999995
Q ss_pred CC---------CccchhhhhccCCCCCCCcEEEEEcCChHHHHhh-------CCCCceeeCCCCChhhHHHHHHHhhh
Q 000559 270 SK---------NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTL-------GCPGECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 270 ~~---------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~-------~~~~~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
.- ..+..+.+...+.+...+.+||+++....+.... +-....+.+++++.+|..+++.+.+-
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 41 0122233444444444556777777654432211 11125788999999999999888773
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.99 E-value=0.042 Score=70.75 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=80.7
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC-cccc-cccHHHHHHHHhcccccc----c-CCcEEE-EEEcCcccHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND-DVNF-RVGKTTLARLVYNDLAVE----D-FNSRAW-VCVSDDFDILRISKAILE 233 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~-~v~i-GvGKTtLa~~v~~~~~~~----~-F~~~~w-v~~s~~~~~~~~~~~i~~ 233 (1422)
..+|||+.++.++++.|........ .+|- |+||||+|..+++..... . .+..+| ++++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------------
Confidence 4689999999999999876543322 2333 999999999999864211 1 234444 322210
Q ss_pred HhcCCCCCCCChhHHHHHHHHHh--ccceeEEEeccCCCCC-------ccchh-hhhccCCCCCCCcEEEEEcCChHHHH
Q 000559 234 SITLSSCDFKDLNPVQVKLKQEV--AGRKFLIVLDDVWSKN-------YGLWE-VLKSPFMAGAPGSKIIVTTRDENVAL 303 (1422)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~~~-~l~~~~~~~~~gs~ilvTtR~~~v~~ 303 (1422)
..+. ....+.++....+-+.+ .+++.+|++|++..-. ..+.. .+...+..+ .-++|-||...+...
T Consensus 255 -~ag~-~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~l~~IgaTT~~e~~~ 330 (852)
T TIGR03345 255 -QAGA-SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--ELRTIAATTWAEYKK 330 (852)
T ss_pred -hccc-ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--CeEEEEecCHHHHhh
Confidence 0000 00111111111122222 2468999999984421 11111 133322222 345666665432211
Q ss_pred h------hCCCCceeeCCCCChhhHHHHHHHhh
Q 000559 304 T------LGCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 304 ~------~~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
. ....-.++.+++++.++..+++....
T Consensus 331 ~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 331 YFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 1 11112678999999999999975443
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.95 E-value=0.13 Score=62.07 Aligned_cols=145 Identities=10% Similarity=0.052 Sum_probs=80.7
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|.|||.|++.+++...... -..++++++ .++..++...+... .. ..+++.++. -=+||+||+.
T Consensus 324 GsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~-~DLLlIDDIq 387 (617)
T PRK14086 324 GLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE-MDILLVDDIQ 387 (617)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc-CCEEEEehhc
Confidence 9999999999999754221 123566643 33444444444211 11 123333333 3478899996
Q ss_pred CCCc-cchh-hhhccCCC-CCCCcEEEEEcCCh---------HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 270 SKNY-GLWE-VLKSPFMA-GAPGSKIIVTTRDE---------NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 270 ~~~~-~~~~-~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
.... ..|+ .+...+.. ...|..|||||+.. .+...+... -+++++..+.+.-.+++.+++.. ....
T Consensus 388 ~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G-Lvv~I~~PD~EtR~aIL~kka~~-r~l~ 465 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG-LITDVQPPELETRIAILRKKAVQ-EQLN 465 (617)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC-ceEEcCCCCHHHHHHHHHHHHHh-cCCC
Confidence 5422 2222 22222211 12356788988752 223333333 67899999999999999988743 2211
Q ss_pred ccccccchHHHHHHHHHHhCCC
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGL 359 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~gl 359 (1422)
--++++.-|++.+.+.
T Consensus 466 ------l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 466 ------APPEVLEFIASRISRN 481 (617)
T ss_pred ------CCHHHHHHHHHhccCC
Confidence 2234556666666554
No 156
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.90 E-value=0.049 Score=70.62 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=81.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC-cccc-cccHHHHHHHHhccccc---cc--CCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND-DVNF-RVGKTTLARLVYNDLAV---ED--FNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~-~v~i-GvGKTtLa~~v~~~~~~---~~--F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
..++||+++++++++.|.......- .+|- |+|||++|..++..... .. -+..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~------ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL------ 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh------
Confidence 4589999999999999976543321 2333 99999999999887531 11 1345553 1 221111
Q ss_pred hcCCCCCCCChhHHHHHHHHHh-ccceeEEEeccCCCCC-------ccchhhhhccCCCCCCCcEEEEEcCChHHHHh--
Q 000559 235 ITLSSCDFKDLNPVQVKLKQEV-AGRKFLIVLDDVWSKN-------YGLWEVLKSPFMAGAPGSKIIVTTRDENVALT-- 304 (1422)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~-- 304 (1422)
.+... ..+.++....+-+.+ +.++.+|++|++..-. ..+...+..+....+ .-++|.+|........
T Consensus 248 -ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 248 -AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred -ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 11111 122233322232222 3568899999984210 011122222221221 2455555555443221
Q ss_pred ----hCCCCceeeCCCCChhhHHHHHHHh
Q 000559 305 ----LGCPGECHNLELLSDNDCWSVFKKH 329 (1422)
Q Consensus 305 ----~~~~~~~~~l~~l~~~~~~~lf~~~ 329 (1422)
+...-..+.++..+.++...++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1112256788888888887777643
No 157
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.89 E-value=0.048 Score=63.84 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=48.7
Q ss_pred ceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHH-----HhhCCCCceeeCCCCChhhHHHH
Q 000559 259 RKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVA-----LTLGCPGECHNLELLSDNDCWSV 325 (1422)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~-----~~~~~~~~~~~l~~l~~~~~~~l 325 (1422)
++..|+||.|... ..|+.....+.+.++. +|++|+-+.... .........+++.||+-.|...+
T Consensus 94 ~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 7889999999766 7899988888776666 899998775543 33333346789999999988654
No 158
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.89 E-value=0.11 Score=61.91 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=83.1
Q ss_pred cccHHHHHHHHhcccccccCC-cEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFN-SRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|+|||+||+.+++.......+ .++|++. .++..++...+... ..+ .+++.++.+.-+||+||+.
T Consensus 140 G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~~~dvLlIDDi~ 204 (440)
T PRK14088 140 GLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRKKVDVLLIDDVQ 204 (440)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHhcCCEEEEechh
Confidence 999999999999976432233 4667754 34555565555321 122 2333444445689999996
Q ss_pred CCCc-cch-hhhhccCCC-CCCCcEEEEEcC-ChHH----HH----hhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 270 SKNY-GLW-EVLKSPFMA-GAPGSKIIVTTR-DENV----AL----TLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 270 ~~~~-~~~-~~l~~~~~~-~~~gs~ilvTtR-~~~v----~~----~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
.... ..+ +.+...+.. ...|..||+||. ...- .. .+.. +.++.+++.+.++-.+++.+.+... ...
T Consensus 205 ~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~-gl~v~i~~pd~e~r~~IL~~~~~~~-~~~ 282 (440)
T PRK14088 205 FLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQM-GLVAKLEPPDEETRKKIARKMLEIE-HGE 282 (440)
T ss_pred hhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhc-CceEeeCCCCHHHHHHHHHHHHHhc-CCC
Confidence 4311 111 222222211 112457888885 3221 11 1222 2578899999999999998887421 111
Q ss_pred ccccccchHHHHHHHHHHhCCCc
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
--++++.-|++.+.|..
T Consensus 283 ------l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 283 ------LPEEVLNFVAENVDDNL 299 (440)
T ss_pred ------CCHHHHHHHHhccccCH
Confidence 22456777888777653
No 159
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.82 E-value=0.14 Score=61.69 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=83.2
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|+|||+||+.+++...... -..++++++. ++..++...+... .. ..+++.++ +.-+||+||+.
T Consensus 158 G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~-~~dlLiiDDi~ 221 (450)
T PRK00149 158 GLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKYR-SVDVLLIDDIQ 221 (450)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHHh-cCCEEEEehhh
Confidence 9999999999999864222 1235566442 3334444444311 11 23334444 34489999996
Q ss_pred CCCccc--hhhhhccCCC-CCCCcEEEEEcCChH---------HHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 270 SKNYGL--WEVLKSPFMA-GAPGSKIIVTTRDEN---------VALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 270 ~~~~~~--~~~l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
...... .+.+...+.. ...|..||+|+.... +...+.. +.++++++.+.++-.+++.+.+-.. ...
T Consensus 222 ~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~-gl~v~i~~pd~~~r~~il~~~~~~~-~~~ 299 (450)
T PRK00149 222 FLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW-GLTVDIEPPDLETRIAILKKKAEEE-GID 299 (450)
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcC-CeeEEecCCCHHHHHHHHHHHHHHc-CCC
Confidence 532111 1222222211 112456888876532 1222222 2578999999999999999888431 111
Q ss_pred ccccccchHHHHHHHHHHhCCCchH
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGLPLA 362 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~glPLa 362 (1422)
--+++..-|++.++|-.-.
T Consensus 300 ------l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 300 ------LPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred ------CCHHHHHHHHcCcCCCHHH
Confidence 2245678888888876554
No 160
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.088 Score=59.71 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=63.4
Q ss_pred ceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChH-HHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCcc
Q 000559 259 RKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDEN-VALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFV 337 (1422)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~ 337 (1422)
++-.+|+|++...+....+.+...+..-..++.+|+||.+.. +.....+.-..+.+.+++.+++.+.+.+.. ..
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~---- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE---- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc----
Confidence 344556799988776777777666654445677777777653 333333222678999999999998887643 11
Q ss_pred ccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 338 ASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 338 ~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
...+.+..++..++|.|.....+
T Consensus 181 ------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567789999999765544
No 161
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.78 E-value=0.0093 Score=59.27 Aligned_cols=102 Identities=21% Similarity=0.311 Sum_probs=65.7
Q ss_pred cccEEEecccccCccCccccCCCCcceeeecCccccccCccccc-CcccceeecccccccCccc--cccccccccCeEee
Q 000559 569 KLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGF-LSHLQILLLKDCHRLKKLP--TNVENLIDLLYFDI 645 (1422)
Q Consensus 569 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~-L~~L~~L~L~~~~~~~~lP--~~i~~L~~L~~L~l 645 (1422)
....+||++|.+..+ ..|..+..|.+|.|.+|+|+.+-+.+.. +++|+.|.|.+| .+..+- ..+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 456778888887766 3467778888888888888877555443 556888888875 444432 12456677888887
Q ss_pred cCCCccccccc----cccccccccccceeEec
Q 000559 646 SGQNLITEMPV----GMNKLKCLLTLSNFVVG 673 (1422)
Q Consensus 646 ~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 673 (1422)
-+|. ...-+. -+.++++|++|+...+.
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 7776 222221 26667777777654443
No 162
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.14 Score=57.76 Aligned_cols=194 Identities=16% Similarity=0.108 Sum_probs=105.7
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhccccc-------------cc-CCcEEEEEEcCcccH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAV-------------ED-FNSRAWVCVSDDFDI 224 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~-------------~~-F~~~~wv~~s~~~~~ 224 (1422)
..++|.+..++.+.+.+..+.-... ..|- |+||+++|..+++..-- .. +....|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3588999999999999876532211 1222 99999999877654211 11 333455532100000
Q ss_pred HHHHHHHHHHhcC--CCCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcC
Q 000559 225 LRISKAILESITL--SSCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTR 297 (1422)
Q Consensus 225 ~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR 297 (1422)
..+-..-++..+. .......+++. +.+.+.+ .+++-++|+|++...+......+...+..-.++.=|++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 0000111111110 11111222332 2334443 35567899999977666666666666643333333444444
Q ss_pred ChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 298 DENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 298 ~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
-..+.....+.-..+++.++++++..+.+.+.... + ........++..++|.|..+...
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~--------~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--E--------ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--c--------cchhHHHHHHHHcCCCHHHHHHH
Confidence 44444444444478899999999999998876421 0 11111357899999999766543
No 163
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.76 E-value=0.035 Score=65.11 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=81.0
Q ss_pred CCcccccchhHHHHHHHhcCCCC-----------CCCcc---cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDT-----------NNDDV---NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDIL 225 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~-----------~~~~v---~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~ 225 (1422)
...+.|+++.++++.+.+...-. ..+.| |- |.|||++|+.+++.... -|+.++. .
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~------~~i~v~~----~ 199 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA------TFIRVVG----S 199 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC------CEEEeeh----H
Confidence 44789999999999887643111 11122 22 99999999999987431 1232221 1
Q ss_pred HHHHHHHHHhcCCCCCCCChhHHHHHHHHHh-ccceeEEEeccCCCCC-----------ccchhhhhccC---CC--CCC
Q 000559 226 RISKAILESITLSSCDFKDLNPVQVKLKQEV-AGRKFLIVLDDVWSKN-----------YGLWEVLKSPF---MA--GAP 288 (1422)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~---~~--~~~ 288 (1422)
++ .....+ ........+.+.. ...+.+|++||++.-. ......+...+ .. ...
T Consensus 200 ~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 200 EL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 11 111110 0111111222222 3456899999996420 01111122222 11 123
Q ss_pred CcEEEEEcCChHHHHh-h---CCCCceeeCCCCChhhHHHHHHHhhh
Q 000559 289 GSKIIVTTRDENVALT-L---GCPGECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 289 gs~ilvTtR~~~v~~~-~---~~~~~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
+..||.||........ + +-.+..+.++..+.++-.++|+.+..
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 5678888876543321 1 11236789999999999999988764
No 164
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.00093 Score=69.05 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=63.3
Q ss_pred CCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCcccc--ccccccccCeE
Q 000559 566 KFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPT--NVENLIDLLYF 643 (1422)
Q Consensus 566 ~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~--~i~~L~~L~~L 643 (1422)
.+.+.+.|++.||.+..| +...+|.-|++|.||-|.|+.|- .+..+++|+.|.|+.| .+..+-+ .+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 345566677777777665 33456777777777777777763 3667777777777764 4443332 34667777777
Q ss_pred eecCCCcccccccc-----ccccccccccceeEe
Q 000559 644 DISGQNLITEMPVG-----MNKLKCLLTLSNFVV 672 (1422)
Q Consensus 644 ~l~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 672 (1422)
-|..|...+.-+.. +.-|.+|+.|+...+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 77776644444432 445566666654433
No 165
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.65 E-value=0.0013 Score=81.30 Aligned_cols=61 Identities=30% Similarity=0.513 Sum_probs=29.6
Q ss_pred cccceeeccCCCCccCCcccCCcccccc-eEEEecccccc-cccCCCCCCCccceEEeccCCCc
Q 000559 1099 VLRRLKIQTCPKLKSLSSSEGQLPVAIK-HLEVQNCAELT-TLSSTGKLPEALQYLSIADCPQL 1160 (1422)
Q Consensus 1099 ~L~~L~l~~~~~L~~l~~~~~~~~~~L~-~L~l~~~~~l~-~~~~~~~~~~~L~~L~L~~~~~~ 1160 (1422)
.+..+.+.+|++++.+....... .... .+.+.+|+.++ .+.........++.|+++.|...
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCGI-SDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhhc-cCcchHHHhcCCcccchHHHHHhccCCccceEecccCccc
Confidence 45566666666666665544332 2222 45555666552 22211111122666666666533
No 166
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.65 E-value=0.0066 Score=63.25 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=14.1
Q ss_pred CCCcEEEEecC--CCCCcCccccCCCCccceeecccc
Q 000559 1219 QNLRVIEISRC--EELRPLPSGVERLNSLQELDISLC 1253 (1422)
Q Consensus 1219 ~~L~~L~l~~n--~~l~~~p~~~~~l~~L~~L~ls~n 1253 (1422)
++|+.|.++.| ...+.++.....+++|++|++++|
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 44444444444 222222222233344444444444
No 167
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.65 E-value=0.0085 Score=59.54 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=69.3
Q ss_pred ccEEEecccccCccCcccc-CCCCcceeeecCccccccCcccccCcccceeecccccccCccccccc-cccccCeEeecC
Q 000559 570 LRVLSLRNYYITEVPNSIR-LLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVE-NLIDLLYFDISG 647 (1422)
Q Consensus 570 Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~-~L~~L~~L~l~~ 647 (1422)
=+.++|.+..+..+-. .+ -+.+...+||++|++..++. |..+..|.+|.|.+| .+..+-+.+. -+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 4667777776654422 22 23567789999999988865 889999999999986 5665555664 567899999999
Q ss_pred CCcccccc--ccccccccccccceeEecc
Q 000559 648 QNLITEMP--VGMNKLKCLLTLSNFVVGL 674 (1422)
Q Consensus 648 ~~~~~~~p--~~i~~L~~L~~L~~~~~~~ 674 (1422)
|+ +..+. ..+..++.|++|.+..+..
T Consensus 98 Ns-i~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 98 NS-IQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cc-hhhhhhcchhccCCccceeeecCCch
Confidence 98 43332 1245556666665555543
No 168
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.64 E-value=0.0055 Score=63.79 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=15.1
Q ss_pred CCCCcceeeecCc--ccc-ccCcccccCcccceeecccc
Q 000559 589 LLTHLRYLNFSGT--RIC-HIPESVGFLSHLQILLLKDC 624 (1422)
Q Consensus 589 ~L~~L~~L~L~~n--~i~-~lp~~~~~L~~L~~L~L~~~ 624 (1422)
.|++|++|.++.| ++. .++-...++++|++|++++|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 4444444444444 222 23322333344444444443
No 169
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.14 Score=62.85 Aligned_cols=187 Identities=13% Similarity=0.143 Sum_probs=98.8
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
..++|.+..++.+.+++......... .|- |+||||+|+.++...-... -+ ..+++.-...+.+......
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSLM 88 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCCC
Confidence 46899999999999998765432211 122 9999999998876432111 00 0111111111121111100
Q ss_pred C-----CCCCCChhHHHHHHHHH-----hccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEE-EcCChHHHHhhC
Q 000559 238 S-----SCDFKDLNPVQVKLKQE-----VAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV-TTRDENVALTLG 306 (1422)
Q Consensus 238 ~-----~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv-TtR~~~v~~~~~ 306 (1422)
. .......++.. .+.+. ..+++-++|+|++..-....+..+...+........+|+ ||....+.....
T Consensus 89 dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 89 DVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 0 00011122211 12222 135566889999966555566667665544333444454 554444443332
Q ss_pred CCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 307 CPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 307 ~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
..-..++..+++.++..+.+...+-... .. -..+.+..|++.++|-+-.+
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i~------i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEG-IE------YEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcC-CC------CCHHHHHHHHHHcCCCHHHH
Confidence 2225678889999988888877663211 11 12345678888888876543
No 170
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.21 E-value=0.11 Score=65.74 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=82.6
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC-cccc-cccHHHHHHHHhcccccc---c--CCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND-DVNF-RVGKTTLARLVYNDLAVE---D--FNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~-~v~i-GvGKTtLa~~v~~~~~~~---~--F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
..++||++++.++++.|.......- .+|- |+|||++|+.+++..... . .++.+|.. ++..+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l------- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL------- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-------
Confidence 4689999999999999877432211 1233 999999999998764211 1 24555531 11111
Q ss_pred hcCCCCCCCChhHHHHHHHHHh-ccceeEEEeccCCCC--------CccchhhhhccCCCCCCCcEEEEEcCChHHHHhh
Q 000559 235 ITLSSCDFKDLNPVQVKLKQEV-AGRKFLIVLDDVWSK--------NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTL 305 (1422)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~ 305 (1422)
+.+.. -..+.++....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|...+.....
T Consensus 254 laG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 254 LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred hcccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHh
Confidence 11110 1112233333333333 345789999999531 011222222222222 133455555444332111
Q ss_pred ------CCCCceeeCCCCChhhHHHHHHHhh
Q 000559 306 ------GCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 306 ------~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
...-..+.+++.+.++..+++....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1112578899999999999987654
No 171
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0097 Score=36.56 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=18.8
Q ss_pred cccEEEecccccCccCccccCC
Q 000559 569 KLRVLSLRNYYITEVPNSIRLL 590 (1422)
Q Consensus 569 ~Lr~L~L~~~~i~~lp~~i~~L 590 (1422)
+|++|||++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888754
No 172
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.16 E-value=0.14 Score=56.56 Aligned_cols=72 Identities=7% Similarity=0.045 Sum_probs=39.6
Q ss_pred eeEEEeccCCCCC--------ccchhhhhccCCCCCCCcEEEEEcCChHHHH------hhCCC-CceeeCCCCChhhHHH
Q 000559 260 KFLIVLDDVWSKN--------YGLWEVLKSPFMAGAPGSKIIVTTRDENVAL------TLGCP-GECHNLELLSDNDCWS 324 (1422)
Q Consensus 260 ~~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~------~~~~~-~~~~~l~~l~~~~~~~ 324 (1422)
.-+|++|++..-. .+..+.+...+........+|+++....... ..... ...+.++.++.++-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 3588999996421 1123344444433333335555554433211 11111 2457889999999999
Q ss_pred HHHHhhh
Q 000559 325 VFKKHAF 331 (1422)
Q Consensus 325 lf~~~a~ 331 (1422)
++.+.+.
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 9987763
No 173
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.09 E-value=1.5 Score=50.40 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=71.8
Q ss_pred cccHHHHHHHHhcccccccCC-cEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFN-SRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|.|||.|++++.+.......+ .++.++ ......+++..+.. .-....++.. .-=++++||++
T Consensus 123 GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq 185 (408)
T COG0593 123 GLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY--SLDLLLIDDIQ 185 (408)
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh--ccCeeeechHh
Confidence 999999999999986533332 234442 22333444444331 1123445554 34488999996
Q ss_pred CCCc-cchh-hhhccCCC-CCCCcEEEEEcCC---------hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhh
Q 000559 270 SKNY-GLWE-VLKSPFMA-GAPGSKIIVTTRD---------ENVALTLGCPGECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 270 ~~~~-~~~~-~l~~~~~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
.-.. +.|+ ++...|.. ...|..||+|++. +++...+.+. -++++++.+.+.....+.+.+.
T Consensus 186 ~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G-l~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 186 FLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG-LVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred HhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce-eEEeeCCCCHHHHHHHHHHHHH
Confidence 6321 1222 22222211 1234489999864 3344444444 7899999999999999988763
No 174
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.01 E-value=0.079 Score=59.76 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=60.9
Q ss_pred hHHHHHHHhcCCCCCCCc--ccc-cccHHHHHHHHhcccccccCCc-EEEEEEcCc-ccHHHHHHHHHHHhcCCCCCCCC
Q 000559 170 DKAKVLDMVLSHDTNNDD--VNF-RVGKTTLARLVYNDLAVEDFNS-RAWVCVSDD-FDILRISKAILESITLSSCDFKD 244 (1422)
Q Consensus 170 ~~~~i~~~l~~~~~~~~~--v~i-GvGKTtLa~~v~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~ 244 (1422)
...++++.+..-..+.+. +|= |+|||||++.+++......-+. ++|+-+.+. ..+.++.+.+...+.....+...
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 445688887754333332 222 9999999999888653222233 478778765 46788888888877654332222
Q ss_pred hh-----HHHHHHHHHh--ccceeEEEeccC
Q 000559 245 LN-----PVQVKLKQEV--AGRKFLIVLDDV 268 (1422)
Q Consensus 245 ~~-----~~~~~l~~~l--~~k~~LlVlDdv 268 (1422)
.. .....+.+++ ++++++||+|++
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11 1111222223 489999999999
No 175
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.01 E-value=0.16 Score=49.54 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=80.5
Q ss_pred chhhhHHHHHHHHHHHHhccchhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccC-cHHHHHHHHHHHHHHHhhhh
Q 000559 2 PVGEVFLGAFLDILFDRLAPDNLRLFPSEDGIRAELKKWEKNLVMIQAVLEDAEEKQLS-NRAVKIWLDDLRALAYDVED 80 (1422)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~~yd~ed 80 (1422)
++|+.+.+|++|.+++.+..............+.-+++|...++.+.-++++.+....- +..-+.-++++.+...++++
T Consensus 1 ~~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 1 PIAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 46777777788877777776655555555677889999999999999999998764322 33336778999999999999
Q ss_pred hhhhhhhcCCCCCCCcccCCCchhhhhhHHHHHHHHHHHHHHHHh
Q 000559 81 ILDEQQLTTRPSLSILQNLPSNLVSQINLGSKIKEVTSRLEELCD 125 (1422)
Q Consensus 81 ~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 125 (1422)
+++.+. .++++ .+...++.+++|+++.+.+....+
T Consensus 81 LV~k~s--------k~~r~--n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 81 LVEKCS--------KVRRW--NLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHhc--------cccHH--HHHhhHhHHHHHHHHHHHHHHHhc
Confidence 998886 11111 112234567788877777766543
No 176
>PRK04132 replication factor C small subunit; Provisional
Probab=94.97 E-value=0.3 Score=61.87 Aligned_cols=152 Identities=14% Similarity=0.046 Sum_probs=93.5
Q ss_pred cccHHHHHHHHhcccccccC-CcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDF-NSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
++||||+|..++++.-...+ ..++-+++|....+..+ +++++.+...... -..+.-++|+|+++
T Consensus 576 ~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~KVvIIDEaD 640 (846)
T PRK04132 576 VLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFKIIFLDEAD 640 (846)
T ss_pred cccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCEEEEEECcc
Confidence 78999999999988532223 24667777775554433 3333333211100 01245699999998
Q ss_pred CCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHH
Q 000559 270 SKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFV 348 (1422)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~ 348 (1422)
..+.+....+...+......+++|.+|.+ ..+.....+.-..+.+.+++.++-.+.+.+.+... ... -..+.
T Consensus 641 ~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E-gi~------i~~e~ 713 (846)
T PRK04132 641 ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-GLE------LTEEG 713 (846)
T ss_pred cCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc-CCC------CCHHH
Confidence 77666777777766544445667666554 33333333332688999999998888777655321 111 12346
Q ss_pred HHHHHHHhCCCchHHH
Q 000559 349 RRKVVEKCKGLPLAAR 364 (1422)
Q Consensus 349 ~~~i~~~c~glPLai~ 364 (1422)
...|++.++|-+-.+.
T Consensus 714 L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 714 LQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 7889999999884443
No 177
>PRK06620 hypothetical protein; Validated
Probab=94.94 E-value=0.15 Score=54.07 Aligned_cols=94 Identities=9% Similarity=-0.064 Sum_probs=54.0
Q ss_pred eeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChH-------HHHhhCCCCceeeCCCCChhhHHHHHHHhhhc
Q 000559 260 KFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDEN-------VALTLGCPGECHNLELLSDNDCWSVFKKHAFA 332 (1422)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~ 332 (1422)
.-++++||+..-.....-.+...+. ..|..||+|++... ....+.+. -++++++++.++-..+.++.+..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g-l~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV-LSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC-ceEeeCCCCHHHHHHHHHHHHHH
Confidence 3578889995321111111211121 24668999987432 22333332 58999999999988888777632
Q ss_pred CCCccccccccchHHHHHHHHHHhCCCchHH
Q 000559 333 SREFVASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
.... --+++.+-|++.+.|---++
T Consensus 163 -~~l~------l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 163 -SSVT------ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred -cCCC------CCHHHHHHHHHHccCCHHHH
Confidence 1111 22456777888877655443
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.75 E-value=0.18 Score=59.88 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=69.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||+.+++..... ...+++++. ..+...+...+... . ...+++.++ +.-+|++||+..
T Consensus 151 G~GKTHLl~Ai~~~l~~~-~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~~-~~dvLiIDDiq~ 213 (445)
T PRK12422 151 GSGKTHLMQAAVHALRES-GGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFYR-NVDALFIEDIEV 213 (445)
T ss_pred CCCHHHHHHHHHHHHHHc-CCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHcc-cCCEEEEcchhh
Confidence 999999999999875422 233556642 33444555554321 1 123344333 345888899855
Q ss_pred CCccch--hhhhccCCC-CCCCcEEEEEcCCh---------HHHHhhCCCCceeeCCCCChhhHHHHHHHhhh
Q 000559 271 KNYGLW--EVLKSPFMA-GAPGSKIIVTTRDE---------NVALTLGCPGECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 271 ~~~~~~--~~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
.....| +.+...+.. ...|..||+||... .+...+.. +.++++++++.++-.+++.+++-
T Consensus 214 l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~-Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 214 FSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW-GIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred hcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC-CeEEecCCCCHHHHHHHHHHHHH
Confidence 422111 222222211 01355788888542 12222222 26788999999999999988874
No 179
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.63 E-value=0.44 Score=53.59 Aligned_cols=96 Identities=14% Similarity=0.208 Sum_probs=62.1
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCc
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREF 336 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 336 (1422)
+++-++|+|++...+...-..+...+..-..++.+|++|.+ ..+.....+.-..+.+.+++.+++.+.+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45668999999776655555565555444456777777664 33443333322678899999999888776431
Q ss_pred cccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 337 VASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
. + ...+..++..++|.|+....+
T Consensus 186 ~------~-~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 186 V------S-ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred C------C-hHHHHHHHHHcCCCHHHHHHH
Confidence 0 1 123567899999999866544
No 180
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.62 E-value=0.1 Score=55.79 Aligned_cols=181 Identities=17% Similarity=0.117 Sum_probs=103.2
Q ss_pred CCcccccchhHHHHHHHhcCCCCCCC-cccc-cccHHHHHHHHhccccccc-CCcEEE-EEEcCcccHHHHHHHHHHHhc
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNND-DVNF-RVGKTTLARLVYNDLAVED-FNSRAW-VCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~~-~v~i-GvGKTtLa~~v~~~~~~~~-F~~~~w-v~~s~~~~~~~~~~~i~~~l~ 236 (1422)
-.+++|-+..+..+.+.+.......- ..|- |.|||+-|..++...--.+ |.+++- .++|....+. +.++
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~------ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE------ 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh------
Confidence 35688999999999888876222111 1222 9999999988877654445 765543 4444433222 1110
Q ss_pred CCCCCCCChhHHHHHHHHHh--ccce-eEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhCCCCcee
Q 000559 237 LSSCDFKDLNPVQVKLKQEV--AGRK-FLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLGCPGECH 312 (1422)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~ 312 (1422)
...+.+.+.....+.. .-++ -.+|||+++....+.|..+...+......++.++.|-. ..+.......-..|
T Consensus 108 ----Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kf 183 (346)
T KOG0989|consen 108 ----KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKF 183 (346)
T ss_pred ----hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHh
Confidence 0011111100000000 0123 37889999888888999998888776666666554443 22222221111457
Q ss_pred eCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCC
Q 000559 313 NLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGL 359 (1422)
Q Consensus 313 ~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 359 (1422)
..++|..++...-+...|-...-. -..+..+.|++.++|-
T Consensus 184 rFk~L~d~~iv~rL~~Ia~~E~v~-------~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 184 RFKKLKDEDIVDRLEKIASKEGVD-------IDDDALKLIAKISDGD 223 (346)
T ss_pred cCCCcchHHHHHHHHHHHHHhCCC-------CCHHHHHHHHHHcCCc
Confidence 889999999888887777332211 1123557788888874
No 181
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.62 E-value=0.2 Score=65.31 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=79.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC-cccc-cccHHHHHHHHhccccccc-----CCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND-DVNF-RVGKTTLARLVYNDLAVED-----FNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~-~v~i-GvGKTtLa~~v~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
..+|||+.++.++++.|........ .+|- |+|||++|..++++..... ....+|.- ++..+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a----- 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA----- 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh-----
Confidence 3589999999999999976543222 2333 9999999999887642111 12333321 1111110
Q ss_pred hcCCCCCCCChhHHHHHHHHHh-c-cceeEEEeccCCCCC--------ccchhhhhccCCCCCCCcEEEEEcCChHHHHh
Q 000559 235 ITLSSCDFKDLNPVQVKLKQEV-A-GRKFLIVLDDVWSKN--------YGLWEVLKSPFMAGAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~ 304 (1422)
.... ..+.+.....+.+.+ + +++.+|++|++..-. .+.-+.+...+ ..+ .-++|-+|........
T Consensus 243 --~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g-~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 243 --GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARG-ELHCIGATTLDEYRKY 317 (852)
T ss_pred --cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcC-ceEEEEeCcHHHHHHH
Confidence 0000 112222222333333 2 468999999995321 01112222222 221 2345545444333111
Q ss_pred ------hCCCCceeeCCCCChhhHHHHHHHhh
Q 000559 305 ------LGCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 305 ------~~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
....-..+.+...+.++..+++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11112457788889999988886654
No 182
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.61 E-value=0.33 Score=55.56 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=48.6
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHH
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKK 328 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~ 328 (1422)
+++=++|+|++...+....+.+...+.....++.+|++|.+. .+.......-..+++.+++.++..+.+.+
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 445578999997666566667777776555677777777653 33333433337789999999998777764
No 183
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=94.60 E-value=0.82 Score=48.04 Aligned_cols=169 Identities=18% Similarity=0.161 Sum_probs=93.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCCCCCCCChhHHHH----HHHHHh-ccce-eEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLSSCDFKDLNPVQV----KLKQEV-AGRK-FLI 263 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----~l~~~l-~~k~-~Ll 263 (1422)
|.|||.+++.+..... + +.++=|.+.. ......+...++..+..+ .........+ .+.... +++| ..+
T Consensus 61 GsGKTv~~Ral~~s~~--~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~al~~~g~r~v~l 135 (269)
T COG3267 61 GSGKTVLRRALLASLN--E-DQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELAALVKKGKRPVVL 135 (269)
T ss_pred CCchhHHHHHHHHhcC--C-CceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999999994433211 1 1122233333 456677888888888763 2333333333 333333 4677 899
Q ss_pred EeccCCCCCccchhhhhccCCC---C-CCCcEEEEEc---CC---hHHHHhhCCCCce-eeCCCCChhhHHHHHHHhhhc
Q 000559 264 VLDDVWSKNYGLWEVLKSPFMA---G-APGSKIIVTT---RD---ENVALTLGCPGEC-HNLELLSDNDCWSVFKKHAFA 332 (1422)
Q Consensus 264 VlDdv~~~~~~~~~~l~~~~~~---~-~~gs~ilvTt---R~---~~v~~~~~~~~~~-~~l~~l~~~~~~~lf~~~a~~ 332 (1422)
+.||..+...+..+.++....- + +.=+++++-- |. ..+....+-.-.+ |++.|++.++...++..+..+
T Consensus 136 ~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~ 215 (269)
T COG3267 136 MVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEG 215 (269)
T ss_pred eehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhc
Confidence 9999977666666665543321 1 1112233211 11 0111111111134 899999999887777666543
Q ss_pred CCCccccccccchHHHHHHHHHHhCCCchHHHHHHH
Q 000559 333 SREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGG 368 (1422)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 368 (1422)
...+.+- -..+....|.....|.|.+|..++.
T Consensus 216 a~~~~~l----~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 216 AGLPEPL----FSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred cCCCccc----CChhHHHHHHHHhccchHHHHHHHH
Confidence 3211110 2234567889999999999976654
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.044 Score=67.44 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=72.4
Q ss_pred CCcccccchhHHHHHHHhcCCCCC----CCcccc-------cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTN----NDDVNF-------RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISK 229 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~----~~~v~i-------GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 229 (1422)
...++|-++.++.|.+.+.....+ .+.+|. |||||-||++++...--. =+..+-+++|+ .+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-e~aliR~DMSE------y~E 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-EQALIRIDMSE------YME 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-CccceeechHH------HHH
Confidence 347899999999999988654332 244544 999999999988643100 13344444443 332
Q ss_pred --HHHHHhcCCCCCCCChhHHHHHHHHHhcccee-EEEeccCCCCCccchhhhhccCCCC
Q 000559 230 --AILESITLSSCDFKDLNPVQVKLKQEVAGRKF-LIVLDDVWSKNYGLWEVLKSPFMAG 286 (1422)
Q Consensus 230 --~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~ 286 (1422)
.+.+-++.+.. .-..++ .-.+-+..++++| .|.||.|...+++.++.+.+.+.+|
T Consensus 563 kHsVSrLIGaPPG-YVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 KHSVSRLIGAPPG-YVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHhCCCCC-Cceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 23333343322 111111 2245666778888 7778999888888888888877654
No 185
>PRK08116 hypothetical protein; Validated
Probab=94.39 E-value=0.085 Score=58.14 Aligned_cols=95 Identities=23% Similarity=0.234 Sum_probs=53.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||.||.++++....+ -..+++++ ..+++..+........ ..+.. .+.+.+.+-. ||||||+..
T Consensus 124 GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d-lLviDDlg~ 189 (268)
T PRK08116 124 GTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD-LLILDDLGA 189 (268)
T ss_pred CCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC-EEEEecccC
Confidence 999999999999986422 33456664 3445555554443211 11111 2334444333 899999955
Q ss_pred CCccchhh--hhccCCC-CCCCcEEEEEcCCh
Q 000559 271 KNYGLWEV--LKSPFMA-GAPGSKIIVTTRDE 299 (1422)
Q Consensus 271 ~~~~~~~~--l~~~~~~-~~~gs~ilvTtR~~ 299 (1422)
....+|.. +...+.. -..|..+||||...
T Consensus 190 e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 190 ERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 43345543 3222221 12456799999754
No 186
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.38 E-value=0.045 Score=53.30 Aligned_cols=16 Identities=50% Similarity=0.536 Sum_probs=14.7
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|+||||+|+.+++...
T Consensus 8 G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 8 GTGKTTLARALAQYLG 23 (132)
T ss_dssp TSSHHHHHHHHHHHTT
T ss_pred CCCeeHHHHHHHhhcc
Confidence 9999999999999854
No 187
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.38 E-value=0.19 Score=64.40 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=65.2
Q ss_pred CcccccchhHHHHHHHhcCCCC----CCCccc------c-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDT----NNDDVN------F-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~----~~~~v~------i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 230 (1422)
..++|.++.++.+.+.+..... ..+.++ - |+|||++|+.++... +...+.+++++-.+.. .
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----~~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----GVHLERFDMSEYMEKH----T 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----cCCeEEEeCchhhhcc----c
Confidence 4678999999998888864321 112232 2 999999999998764 2345666665532211 1
Q ss_pred HHHHhcCCCCCCCChhHHHHHHHHHhccc-eeEEEeccCCCCCccchhhhhccCCC
Q 000559 231 ILESITLSSCDFKDLNPVQVKLKQEVAGR-KFLIVLDDVWSKNYGLWEVLKSPFMA 285 (1422)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~~~~ 285 (1422)
+...++.... ....++ ...+.+.++.+ .-+++||+++..+.+.++.+...+..
T Consensus 526 ~~~lig~~~g-yvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 VSRLIGAPPG-YVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHHHhcCCCC-Ccccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 2222222211 111111 11234444444 45999999988777777777766644
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.24 E-value=0.1 Score=58.71 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=63.2
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCc
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREF 336 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 336 (1422)
+++=.+|+|+++..+......+...+..-..++.+|++|.+. .+.....+.-..+.+.+++.++..+.+.+...
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----
Confidence 556688899998777667777776665555567777777654 34333332226789999999999888876531
Q ss_pred cccccccchHHHHHHHHHHhCCCchHH
Q 000559 337 VASSRLCNSEFVRRKVVEKCKGLPLAA 363 (1422)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~c~glPLai 363 (1422)
.....+...++.++|.|+.+
T Consensus 181 -------~~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 181 -------AEISEILTALRINYGRPLLA 200 (325)
T ss_pred -------cChHHHHHHHHHcCCCHHHH
Confidence 11112456788899999633
No 189
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.18 E-value=0.32 Score=51.24 Aligned_cols=119 Identities=21% Similarity=0.296 Sum_probs=65.3
Q ss_pred CCCCcccccchhHHHHHHHhcC---CCCCCCcc--cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHH
Q 000559 159 ATEPAVYGRDGDKAKVLDMVLS---HDTNNDDV--NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAIL 232 (1422)
Q Consensus 159 ~~~~~~vGr~~~~~~i~~~l~~---~~~~~~~v--~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 232 (1422)
+.-..++|.+..++.+++-... +.....++ |- |.|||++++++.+.+...+.. -|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLR---lIev~k~----------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLR---LIEVSKE----------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCce---EEEECHH-----------
Confidence 3456799999998888765432 22211221 22 999999999999876533211 2222221
Q ss_pred HHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCC-ccchhhhhccCCCC---CC-CcEEEEEcCChHH
Q 000559 233 ESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKN-YGLWEVLKSPFMAG---AP-GSKIIVTTRDENV 301 (1422)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~~~~~---~~-gs~ilvTtR~~~v 301 (1422)
+..++..+...+++ +..||+|.+||+.-+. +.....++..+..+ .+ ...|.+||-.++.
T Consensus 90 --------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 --------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred --------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 22233333333332 3569999999986543 33455566555432 22 3344455544444
No 190
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.98 E-value=0.39 Score=62.36 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=33.8
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc-ccc-cccHHHHHHHHhccc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD-VNF-RVGKTTLARLVYNDL 205 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~-v~i-GvGKTtLa~~v~~~~ 205 (1422)
..++||+.++.++++.|.....+..+ +|- |+||||+|..++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999765432221 233 999999999998865
No 191
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.88 E-value=0.0034 Score=63.28 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=69.9
Q ss_pred hcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeE
Q 000559 564 LSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYF 643 (1422)
Q Consensus 564 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L 643 (1422)
+..++..++||++.|++..+-..|+.++.|.-|+++.|.|..+|..++.+..+..+++..| .....|.+++.+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4566778888888888877777788888888888888888888888888888888888764 677788888888888888
Q ss_pred eecCCC
Q 000559 644 DISGQN 649 (1422)
Q Consensus 644 ~l~~~~ 649 (1422)
++.+|.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 887776
No 192
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.85 E-value=0.058 Score=57.17 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=23.2
Q ss_pred ccc-cccHHHHHHHHhcccccccCCcEEEEEEc
Q 000559 188 VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVS 219 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s 219 (1422)
||- |.||||+++.+..... +.|+++++++-.
T Consensus 19 IG~sGSGKT~li~~lL~~~~-~~f~~I~l~t~~ 50 (241)
T PF04665_consen 19 IGKSGSGKTTLIKSLLYYLR-HKFDHIFLITPE 50 (241)
T ss_pred ECCCCCCHHHHHHHHHHhhc-ccCCEEEEEecC
Confidence 444 9999999999987643 449888877553
No 193
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.77 E-value=0.29 Score=58.50 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=82.8
Q ss_pred CcccccchhHHHHHHHhcCCC-----------CCCCcc---cc-cccHHHHHHHHhccccccc----CCcEEEEEEcCcc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHD-----------TNNDDV---NF-RVGKTTLARLVYNDLAVED----FNSRAWVCVSDDF 222 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~-----------~~~~~v---~i-GvGKTtLa~~v~~~~~~~~----F~~~~wv~~s~~~ 222 (1422)
..+.|.+..+++|.+.+..+- ...+.+ |- |.|||++|+.+++...... +....|+++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 457889999999888764210 011112 22 9999999999998754221 2234455544321
Q ss_pred cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHH-hccceeEEEeccCCCCC-------ccch-----hhhhccCCC--CC
Q 000559 223 DILRISKAILESITLSSCDFKDLNPVQVKLKQE-VAGRKFLIVLDDVWSKN-------YGLW-----EVLKSPFMA--GA 287 (1422)
Q Consensus 223 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~~~~--~~ 287 (1422)
++....+. .......+....++. -.+++++|++|+++.-. ..+. ..+...+.. ..
T Consensus 262 --------Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 262 --------LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred --------hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11111000 000011111122221 12478999999996421 0111 123222322 11
Q ss_pred CCcEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhh
Q 000559 288 PGSKIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 288 ~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
.+..||.||......+.. +-.+..++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 344566677655433211 1123568999999999999999876
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.67 E-value=0.22 Score=49.15 Aligned_cols=78 Identities=17% Similarity=0.013 Sum_probs=41.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccc-eeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGR-KFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~ 269 (1422)
|+||||+|+.++...... ...+++++.+........... ..... ..............+.+..+.. ..+|++|+++
T Consensus 12 G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~ 88 (148)
T smart00382 12 GSGKTTLARALARELGPP-GGGVIYIDGEDILEEVLDQLL-LIIVG-GKKASGSGELRLRLALALARKLKPDVLILDEIT 88 (148)
T ss_pred CCcHHHHHHHHHhccCCC-CCCEEEECCEEccccCHHHHH-hhhhh-ccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 999999999999875422 234667666554332222221 11111 1111222222233344444433 3999999997
Q ss_pred CC
Q 000559 270 SK 271 (1422)
Q Consensus 270 ~~ 271 (1422)
..
T Consensus 89 ~~ 90 (148)
T smart00382 89 SL 90 (148)
T ss_pred cc
Confidence 65
No 195
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.66 E-value=1.4 Score=57.10 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCcccccchhHHHHHHHhcCC----CCCCCcc---cc-cccHHHHHHHHhcccc
Q 000559 161 EPAVYGRDGDKAKVLDMVLSH----DTNNDDV---NF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~----~~~~~~v---~i-GvGKTtLa~~v~~~~~ 206 (1422)
+..++|.++.+++|.+++... ......+ |- |+|||++|+.+++...
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345889999999998876532 1111222 22 9999999999998754
No 196
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.59 E-value=0.71 Score=59.04 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=81.1
Q ss_pred CCcccccchhHHHHHHHhcCCC----CCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHD----TNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAIL 232 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~----~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 232 (1422)
+...+|.++.+++|++++.... .....+.+ |+||||+|+.++.... ..| +-++++...+..++...--
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~-~~~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG-RKY---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC-CCE---EEEEcCCCCCHHHhccchh
Confidence 4568999999999998887421 11222333 9999999999997643 112 2233444333322221110
Q ss_pred HHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccc----hhhhhccCCC---------------CCCCcEEE
Q 000559 233 ESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGL----WEVLKSPFMA---------------GAPGSKII 293 (1422)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~~~~---------------~~~gs~il 293 (1422)
...+ .........+.+. ....-+++||.++...... ...+...+.. .-...-+|
T Consensus 397 ~~~g------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIG------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCC------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 1111 1112222223222 2234478899985542211 1222222211 11334445
Q ss_pred EEcCChHHHHhhCCCCceeeCCCCChhhHHHHHHHhh
Q 000559 294 VTTRDENVALTLGCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 294 vTtR~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
.|+.+..+....-..-.++++.+++.++-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5665544333322222577888888888877776665
No 197
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=0.012 Score=61.10 Aligned_cols=81 Identities=25% Similarity=0.246 Sum_probs=67.5
Q ss_pred HhcCCCcccEEEecccccCccCccccCCCCcceeeecCccccccCc--ccccCcccceeecccccccCccccc-----cc
Q 000559 563 VLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRICHIPE--SVGFLSHLQILLLKDCHRLKKLPTN-----VE 635 (1422)
Q Consensus 563 ~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~n~i~~lp~--~~~~L~~L~~L~L~~~~~~~~lP~~-----i~ 635 (1422)
...+++.|.||.|+-|.|+.+ ..+..+++|+.|.|+.|.|.++-+ -+.+|++|++|-|..|...+.-+.. +.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 467899999999999999988 558899999999999999988753 3789999999999988766655532 46
Q ss_pred cccccCeEe
Q 000559 636 NLIDLLYFD 644 (1422)
Q Consensus 636 ~L~~L~~L~ 644 (1422)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 688888887
No 198
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.47 E-value=0.23 Score=48.06 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=23.7
Q ss_pred cccCCcccceEeccCCCCCcccC-CCCCCCCCCcEEEEecCCCCCcCccccCCCCccceeecc
Q 000559 1190 ALHKLVSLDQMYIGNCPSLVSFP-DERLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDIS 1251 (1422)
Q Consensus 1190 ~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~l~~~p~~~~~l~~L~~L~ls 1251 (1422)
.|.++++|+.+.+.. ....++ ..|..+++|+.+++.++ ....-..+|.++++|+.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 345556666666653 222332 33445556666666552 222222345555555555554
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.45 E-value=0.25 Score=60.73 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=33.0
Q ss_pred CCcccccchhHHHHHHHhcCCCCC---CCcccc----cccHHHHHHHHhccc
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTN---NDDVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~---~~~v~i----GvGKTtLa~~v~~~~ 205 (1422)
-.+++|-++.++++..++...... .+.+.+ |.||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999998654321 122333 999999999999864
No 200
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.37 E-value=0.39 Score=56.04 Aligned_cols=151 Identities=17% Similarity=0.093 Sum_probs=79.5
Q ss_pred CCcccccchhHHHHHHHhcCCC-----------CCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHD-----------TNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDIL 225 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~-----------~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~ 225 (1422)
-.++.|.+..+++|.+.+...- ...+.+-+ |.|||++|+.+++..... | +.+.. .
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~-f---i~i~~------s 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT-F---IRVVG------S 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-E---EEEeh------H
Confidence 4468899988888887764210 01122222 999999999999874321 2 22211 1
Q ss_pred HHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCC----------ccc----hhhhhccCCC--CCCC
Q 000559 226 RISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKN----------YGL----WEVLKSPFMA--GAPG 289 (1422)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~~~~--~~~g 289 (1422)
.+ .....+ .........+.......+.+|++|+++.-. ... +..+...+.. ...+
T Consensus 214 ~l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EF----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HH----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 11 111110 011111122222234568899999985310 001 1122222221 2245
Q ss_pred cEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhh
Q 000559 290 SKIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 290 s~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
..||.||...+..+.. +-.+..+.+...+.++..++|..+.
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 6788888865543221 1223668888888888888887665
No 201
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.30 E-value=0.48 Score=55.72 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=80.2
Q ss_pred CcccccchhHHHHHHHhcCCCC-----------CCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDT-----------NNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILR 226 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~-----------~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~ 226 (1422)
.++.|.+..+++|.+.+.-.-. ....+-+ |.|||++|+.+++.... .| +.|..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-~f---i~V~~se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-TF---LRVVGSE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-CE---EEEecch------
Confidence 4578999998888887742110 1111212 99999999999997431 13 2221111
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCC--------cc------chhhhhccCCC--CCCCc
Q 000559 227 ISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKN--------YG------LWEVLKSPFMA--GAPGS 290 (1422)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~------~~~~l~~~~~~--~~~gs 290 (1422)
+. ....+ .........+...-.+.+.+|+||+++... .. ....+...+.. ...+.
T Consensus 253 L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 11 11100 011111122222224567899999984310 00 01111111211 12356
Q ss_pred EEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhhh
Q 000559 291 KIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 291 ~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
+||.||...+..... +-.+..+++...+.++..++|..++.
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 788888866554332 12236788999999999999987763
No 202
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.17 E-value=0.17 Score=65.44 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=70.5
Q ss_pred CCcccccchhHHHHHHHhcCCC----CCCCcccc-------cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHD----TNNDDVNF-------RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISK 229 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~----~~~~~v~i-------GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 229 (1422)
...++|.++.++.|.+.+.... ...+.+++ |+|||.+|+.++.... ......+-+++++-.+ -.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~-~~~~~~~~~dmse~~~----~~ 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY-GGEQNLITINMSEFQE----AH 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh-CCCcceEEEeHHHhhh----hh
Confidence 3478999999999999885421 11233432 9999999998876532 1122223333332111 01
Q ss_pred HHHHHhcCCCCC--CCChhHHHHHHHHHhc-cceeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEE
Q 000559 230 AILESITLSSCD--FKDLNPVQVKLKQEVA-GRKFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVT 295 (1422)
Q Consensus 230 ~i~~~l~~~~~~--~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvT 295 (1422)
.+..-++.+..- ...... +.+.++ ....+|+||++...+++.++.+...+..+. ..+-||+|
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~----L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGV----LTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhccccCCCCCcccccccch----HHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111222222111 111112 233333 445699999997777777777776665442 34566777
Q ss_pred cCC
Q 000559 296 TRD 298 (1422)
Q Consensus 296 tR~ 298 (1422)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 203
>CHL00176 ftsH cell division protein; Validated
Probab=93.01 E-value=0.54 Score=58.39 Aligned_cols=172 Identities=15% Similarity=0.209 Sum_probs=88.2
Q ss_pred CcccccchhHHHHHHH---hcCCCC----C---CCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHH
Q 000559 162 PAVYGRDGDKAKVLDM---VLSHDT----N---NDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRI 227 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~---l~~~~~----~---~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~ 227 (1422)
.+++|.++.++++.+. +..... + .+.|-+ |.|||++|+.++....+ -|+.++.. ++
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~------p~i~is~s----~f 252 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV------PFFSISGS----EF 252 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC------CeeeccHH----HH
Confidence 4578887666555444 333221 0 111212 99999999999986532 22322211 11
Q ss_pred HHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCC----------ccc----hhhhhccCCC--CCCCcE
Q 000559 228 SKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKN----------YGL----WEVLKSPFMA--GAPGSK 291 (1422)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~~~~--~~~gs~ 291 (1422)
. ..... .........+.+..+..+++|++||++.-. ... +..+...+.. ...+-.
T Consensus 253 ~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 V----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred H----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1 11100 011122233444445678999999995321 011 1222222221 234556
Q ss_pred EEEEcCChHHHHh-h---CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc
Q 000559 292 IIVTTRDENVALT-L---GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 292 ilvTtR~~~v~~~-~---~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
||.||...+..+. + +-.+..+.+...+.++-.++++.++-... . ........+++.+.|.-
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~-----~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---L-----SPDVSLELIARRTPGFS 388 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---c-----chhHHHHHHHhcCCCCC
Confidence 7777776544322 1 11236778888888888888888773311 0 11223456777777743
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.00 E-value=0.42 Score=62.06 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCcccccchhHHHHHHHhcCCCC----CCC---cccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDT----NND---DVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISK 229 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~----~~~---~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 229 (1422)
...++|.+..++.+.+.+..... ..+ .+-+ |+|||++|+.+++... ..-...+.++++.-.. . .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~-~~~~~~i~id~se~~~-~---~ 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDDAMVRIDMSEFME-K---H 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh-cCCCcEEEEEhHHhhh-h---h
Confidence 34689999999998888864321 111 2222 9999999999986532 1122344555443211 0 0
Q ss_pred HHHHHhcCCCCCCCChhHHHHHHHHHhccc-eeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEEcC
Q 000559 230 AILESITLSSCDFKDLNPVQVKLKQEVAGR-KFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVTTR 297 (1422)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR 297 (1422)
.+..-++.+.. ....++ ...+.+.++.+ .-+|+|||+...+.+.+..+...+..+. ..+.||+||.
T Consensus 642 ~~~~LiG~~pg-y~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN 719 (857)
T PRK10865 642 SVSRLVGAPPG-YVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSN 719 (857)
T ss_pred hHHHHhCCCCc-ccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCC
Confidence 11122222211 111111 11233333333 3599999997766677777766554321 1234778887
Q ss_pred C
Q 000559 298 D 298 (1422)
Q Consensus 298 ~ 298 (1422)
.
T Consensus 720 ~ 720 (857)
T PRK10865 720 L 720 (857)
T ss_pred c
Confidence 5
No 205
>PRK08118 topology modulation protein; Reviewed
Probab=92.90 E-value=0.04 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.1
Q ss_pred cccHHHHHHHHhccccccc--CCcEEE
Q 000559 191 RVGKTTLARLVYNDLAVED--FNSRAW 215 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~--F~~~~w 215 (1422)
|.||||||+.+++...... ||..+|
T Consensus 11 GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 11 GSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCHHHHHHHHHHHhCCCceecchhhc
Confidence 9999999999999876553 787776
No 206
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.89 E-value=0.064 Score=30.45 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=5.2
Q ss_pred CcceeeecCcccccc
Q 000559 592 HLRYLNFSGTRICHI 606 (1422)
Q Consensus 592 ~L~~L~L~~n~i~~l 606 (1422)
+|+.|+|++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 207
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=92.88 E-value=0.15 Score=55.25 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=46.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l- 256 (1422)
|+||||||+++++....+.-+.++++-+++.. .+.++.+++.+.=... ..+..... .....+.+++
T Consensus 79 G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr 158 (274)
T cd01133 79 GVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFR 158 (274)
T ss_pred CCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998653222456677777654 4556666655431111 01111111 1122344555
Q ss_pred -c-cceeEEEeccC
Q 000559 257 -A-GRKFLIVLDDV 268 (1422)
Q Consensus 257 -~-~k~~LlVlDdv 268 (1422)
+ ++.+|+|+||+
T Consensus 159 ~~~g~~Vl~~~Dsl 172 (274)
T cd01133 159 DEEGQDVLLFIDNI 172 (274)
T ss_pred HhcCCeEEEEEeCh
Confidence 3 88999999999
No 208
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.70 E-value=0.23 Score=55.71 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=53.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||.||.++++....+++. +.++++. +++.++...... .+..+ .+.. + .+-=||||||+-.
T Consensus 166 G~GKThLa~Aia~~l~~~g~~-v~~~~~~------~l~~~lk~~~~~-----~~~~~---~l~~-l-~~~dlLiIDDiG~ 228 (306)
T PRK08939 166 GVGKSYLLAAIANELAKKGVS-STLLHFP------EFIRELKNSISD-----GSVKE---KIDA-V-KEAPVLMLDDIGA 228 (306)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-EEEEEHH------HHHHHHHHHHhc-----CcHHH---HHHH-h-cCCCEEEEecCCC
Confidence 999999999999987533344 5666543 444555444421 11222 2222 2 2455899999977
Q ss_pred CCccchhh--hhccC-CCC-CCCcEEEEEcCC
Q 000559 271 KNYGLWEV--LKSPF-MAG-APGSKIIVTTRD 298 (1422)
Q Consensus 271 ~~~~~~~~--l~~~~-~~~-~~gs~ilvTtR~ 298 (1422)
+....|.. +...+ ... ..+-.+|+||-.
T Consensus 229 e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 229 EQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 66667753 43333 221 245578888864
No 209
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=92.60 E-value=1.3 Score=51.18 Aligned_cols=68 Identities=10% Similarity=0.236 Sum_probs=39.7
Q ss_pred chhHHHHHHHhcCCC-CCCCcccc----cccHHHHHHHHhcccccc---cC---CcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 168 DGDKAKVLDMVLSHD-TNNDDVNF----RVGKTTLARLVYNDLAVE---DF---NSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 168 ~~~~~~i~~~l~~~~-~~~~~v~i----GvGKTtLa~~v~~~~~~~---~F---~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
+.-.+.+.+.+.... ....+||+ |.||||+.+.+.+..+.. .+ ..-+|-......-...++.++..++
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 344566777777654 33456777 999999999998766544 11 1223433332323445555555555
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.59 E-value=0.43 Score=48.13 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=36.8
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChH-HHHhhCCCCceeeCCCC
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDEN-VALTLGCPGECHNLELL 317 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~l 317 (1422)
+++=.+|+||++....+.+..+...+.....++++|++|++.. +.....+.-..+.+.++
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE---
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCC
Confidence 3456899999988777788888777766667889988888754 33333222244555544
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.43 E-value=1.4 Score=53.99 Aligned_cols=173 Identities=19% Similarity=0.175 Sum_probs=85.7
Q ss_pred CCcccccchhHHHHHHHhc---CCC-------CCCCcc---cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVL---SHD-------TNNDDV---NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILR 226 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~---~~~-------~~~~~v---~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~ 226 (1422)
-.+++|.++.++++.+.+. ... ...+.+ |- |.|||++|+.+++..... ++.++. .+
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------~~~i~~----~~ 123 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP------FFSISG----SD 123 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC------eeeccH----HH
Confidence 3468888877766655443 211 111112 22 999999999999875422 222221 11
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCC----------ccchhh----hhccCC--CCCCCc
Q 000559 227 ISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKN----------YGLWEV----LKSPFM--AGAPGS 290 (1422)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~~~--~~~~gs 290 (1422)
+. ..... .....+...+.......+.+|++||++.-. ...+.. +...+. ....+-
T Consensus 124 ~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 11 11100 111222223333334567899999995421 011111 111111 122345
Q ss_pred EEEEEcCChHHHHh-h---CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc
Q 000559 291 KIIVTTRDENVALT-L---GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 291 ~ilvTtR~~~v~~~-~---~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
.||.||......+. + +-.+..+.+...+.++-.++|..+.-.... . + .....++++.+.|.-
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~--~-----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-A--P-----DVDLKAVARRTPGFS 260 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-C--c-----chhHHHHHHhCCCCC
Confidence 56667766442211 1 112367889988888888888877632111 1 1 112346777777744
No 212
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.43 E-value=0.34 Score=63.19 Aligned_cols=130 Identities=21% Similarity=0.248 Sum_probs=71.4
Q ss_pred CcccccchhHHHHHHHhcCCCC----CCCc---ccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDT----NNDD---VNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~----~~~~---v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 230 (1422)
..++|.+..++.+.+.+..... ..+. +-+ |+|||++|+.++.... ..-...+.++++.-.+.. .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~-~~~~~~i~~d~s~~~~~~----~ 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF-DDEDAMVRIDMSEYMEKH----S 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc-CCCCcEEEEechhhcccc----h
Confidence 4689999999999999875321 1111 212 9999999999987532 112234455555432211 1
Q ss_pred HHHHhcCCCCCCCChhHHHHHHHHHhccc-eeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEEcCC
Q 000559 231 ILESITLSSCDFKDLNPVQVKLKQEVAGR-KFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVTTRD 298 (1422)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~ 298 (1422)
+...++.+.. ....++ ...+.+.++.+ ..+|+||++...+.+.+..+...+..+. ..+-||+||..
T Consensus 640 ~~~l~g~~~g-~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 640 VARLIGAPPG-YVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHHhcCCCCC-ccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 1112222211 111111 11233333333 3489999998777777887777664431 23447777764
No 213
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.31 E-value=1.6 Score=48.23 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=29.3
Q ss_pred hhHHHHHHHhcCCCCCCCcccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHH
Q 000559 169 GDKAKVLDMVLSHDTNNDDVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRI 227 (1422)
Q Consensus 169 ~~~~~i~~~l~~~~~~~~~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~ 227 (1422)
+-++++..++..+.. .-..|- |+|||++|+.+++... ...+++++....+..++
T Consensus 9 ~l~~~~l~~l~~g~~-vLL~G~~GtGKT~lA~~la~~lg----~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSGYP-VHLRGPAGTGKTTLAMHVARKRD----RPVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcCCe-EEEEcCCCCCHHHHHHHHHHHhC----CCEEEEeCCccCCHHHH
Confidence 334555555543211 111233 9999999999987421 12455655555444443
No 214
>PRK10536 hypothetical protein; Provisional
Probab=92.28 E-value=0.42 Score=51.07 Aligned_cols=130 Identities=14% Similarity=0.155 Sum_probs=67.6
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccccccc-CCcEEEEE----EcCc--c---cHHH-
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVED-FNSRAWVC----VSDD--F---DILR- 226 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~-F~~~~wv~----~s~~--~---~~~~- 226 (1422)
..+.+|.......+.++.+. ..|.+ |.|||+||.+++.+.-..+ |+.++-+. +++. | ++.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 45678889999999988652 22322 9999999998877532123 55433321 1111 0 1111
Q ss_pred ---HHHHHHHHhcCCCCCCCChhHHHH--------HHHHHhcccee---EEEeccCCCCCccchhhhhccCCCCCCCcEE
Q 000559 227 ---ISKAILESITLSSCDFKDLNPVQV--------KLKQEVAGRKF---LIVLDDVWSKNYGLWEVLKSPFMAGAPGSKI 292 (1422)
Q Consensus 227 ---~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~i 292 (1422)
.++-+.+.+..-. .....+.... .--.+++++.+ +||+|.+..........+. ...+.+|||
T Consensus 131 ~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~ 206 (262)
T PRK10536 131 FAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTV 206 (262)
T ss_pred HHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEE
Confidence 1222222221100 0000111000 01124566654 9999999776554444444 444578999
Q ss_pred EEEcCCh
Q 000559 293 IVTTRDE 299 (1422)
Q Consensus 293 lvTtR~~ 299 (1422)
|+|--..
T Consensus 207 v~~GD~~ 213 (262)
T PRK10536 207 IVNGDIT 213 (262)
T ss_pred EEeCChh
Confidence 9986543
No 215
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.21 E-value=0.096 Score=29.74 Aligned_cols=17 Identities=41% Similarity=0.641 Sum_probs=11.6
Q ss_pred CcccEEEecccccCccC
Q 000559 568 KKLRVLSLRNYYITEVP 584 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp 584 (1422)
++||+|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.10 E-value=0.35 Score=52.10 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=50.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||..+++..... -..+++++ ..++...+-.... . .....+ .+.+.+. +.=+||+||+..
T Consensus 109 GtGKThLa~aia~~l~~~-g~~v~~it------~~~l~~~l~~~~~-~--~~~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 109 GTGKNHLAAAICNELLLR-GKSVLIIT------VADIMSAMKDTFS-N--SETSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEEE------HHHHHHHHHHHHh-h--ccccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 999999999999875422 23456664 3444444433332 1 111111 2333444 344888899976
Q ss_pred CCccchhh--hhccCCCC-CCCcEEEEEcCC
Q 000559 271 KNYGLWEV--LKSPFMAG-APGSKIIVTTRD 298 (1422)
Q Consensus 271 ~~~~~~~~--l~~~~~~~-~~gs~ilvTtR~ 298 (1422)
....+|+. +...+... ...-.+||||..
T Consensus 174 ~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 174 QTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 65566663 22222111 123467888764
No 217
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.97 E-value=2.4 Score=48.42 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=63.1
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCc
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREF 336 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 336 (1422)
+++=.+|+|+++..+......+...+..-..++.+|++|.+. .+.....+.-..+.+.+++.+++.+.+.+.. +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C----
Confidence 566689999997776666777766665544567777777653 3444433222567899999999888775432 1
Q ss_pred cccccccchHHHHHHHHHHhCCCchHHH
Q 000559 337 VASSRLCNSEFVRRKVVEKCKGLPLAAR 364 (1422)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~c~glPLai~ 364 (1422)
. + .+.+..+++.++|.|....
T Consensus 182 -~-----~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 -M-----S-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred -C-----C-HHHHHHHHHHcCCCHHHHH
Confidence 0 1 1235678999999996443
No 218
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=2.1 Score=49.45 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=67.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|.|||+||.+++.. ..|..+=-++...-..+.+ ............+..+..--.||+||+..
T Consensus 548 ~sGKTaLAA~iA~~---S~FPFvKiiSpe~miG~sE---------------saKc~~i~k~F~DAYkS~lsiivvDdiEr 609 (744)
T KOG0741|consen 548 GSGKTALAAKIALS---SDFPFVKIISPEDMIGLSE---------------SAKCAHIKKIFEDAYKSPLSIIVVDDIER 609 (744)
T ss_pred CCChHHHHHHHHhh---cCCCeEEEeChHHccCccH---------------HHHHHHHHHHHHHhhcCcceEEEEcchhh
Confidence 99999999999986 4476443332211111110 11111222233444566677999999944
Q ss_pred CCccchhhhhccC---------------CCCCCCcEEEEEcCChHHHHhhC---CCCceeeCCCCCh-hhHHHHHHHh
Q 000559 271 KNYGLWEVLKSPF---------------MAGAPGSKIIVTTRDENVALTLG---CPGECHNLELLSD-NDCWSVFKKH 329 (1422)
Q Consensus 271 ~~~~~~~~l~~~~---------------~~~~~gs~ilvTtR~~~v~~~~~---~~~~~~~l~~l~~-~~~~~lf~~~ 329 (1422)
- -+|-.++..+ |..++.--|+-||....|...|+ +.+..+.++.++. ++..+.+...
T Consensus 610 L--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 610 L--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred h--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 3 4554433222 22323334555888888887775 3346788988887 6666666553
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.75 E-value=2.5 Score=47.59 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=63.7
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCc
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREF 336 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 336 (1422)
+++=.+|+|++...+......+...+..-..++.+|++|.+ ..+.....+.-..+.+.+++.+++.+.+.+..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------
Confidence 44558889999777767777777666554456677666655 44444443333678999999999988775431
Q ss_pred cccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 337 VASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
. + .+..+++.++|.|+....+
T Consensus 181 ---~---~---~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 ---I---T---VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ---C---c---hHHHHHHHcCCCHHHHHHH
Confidence 0 1 1356789999999877544
No 220
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.70 E-value=0.24 Score=48.93 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHhcc-ceeEEEeccCCCC---CccchhhhhccCCCCCCCcEEEEEcCChH
Q 000559 252 LKQEVAG-RKFLIVLDDVWSK---NYGLWEVLKSPFMAGAPGSKIIVTTRDEN 300 (1422)
Q Consensus 252 l~~~l~~-k~~LlVlDdv~~~---~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 300 (1422)
.++.++. +-=|+|||++-.. .....+.+...+.....+..||+|.|+..
T Consensus 87 a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 87 AKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3444443 3449999998332 12344566666666666789999999854
No 221
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.42 E-value=0.012 Score=59.52 Aligned_cols=91 Identities=18% Similarity=0.248 Sum_probs=78.1
Q ss_pred cCccC-ccccCCCCcceeeecCccccccCcccccCcccceeecccccccCccccccccccccCeEeecCCCccccccccc
Q 000559 580 ITEVP-NSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDISGQNLITEMPVGM 658 (1422)
Q Consensus 580 i~~lp-~~i~~L~~L~~L~L~~n~i~~lp~~~~~L~~L~~L~L~~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i 658 (1422)
++++| ..|.....-+.||++.|++-.+-..|+.++.|..||++.| .+..+|.+++.+..++++++..|. ....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44554 4566778899999999999999888999999999999985 889999999999999999988887 88899999
Q ss_pred cccccccccceeEe
Q 000559 659 NKLKCLLTLSNFVV 672 (1422)
Q Consensus 659 ~~L~~L~~L~~~~~ 672 (1422)
+++..++.++.-.+
T Consensus 108 ~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKT 121 (326)
T ss_pred cccCCcchhhhccC
Confidence 99999888765443
No 222
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.35 E-value=0.49 Score=61.56 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=71.9
Q ss_pred CcccccchhHHHHHHHhcCCCC----CCCcccc-------cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDT----NNDDVNF-------RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~----~~~~v~i-------GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 230 (1422)
..++|-+..++.|.+.+..... ..+.++. |+|||+||+.+++..-.. -...+-+++++-.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-~~~~~~~d~s~~~~~~~---- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-EDAMIRLDMSEYMEKHT---- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-ccceEEEEchhcccccc----
Confidence 5689999999999888863221 1122221 999999999998753211 12344555554322111
Q ss_pred HHHHhcCCCCCCCChhHHHHHHHHHhccce-eEEEeccCCCCCccchhhhhccCCCC-----------CCCcEEEEEcCC
Q 000559 231 ILESITLSSCDFKDLNPVQVKLKQEVAGRK-FLIVLDDVWSKNYGLWEVLKSPFMAG-----------APGSKIIVTTRD 298 (1422)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~ilvTtR~ 298 (1422)
+...++.+.. ....++ ...+.+.++.++ .+++||++...+.+.++.+...+..+ -..+-||+||..
T Consensus 584 ~~~l~g~~~g-yvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 584 VSKLIGSPPG-YVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HHHhcCCCCc-ccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1112222211 111111 113445555555 48899999877777777777766543 134556667664
No 223
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.34 E-value=0.68 Score=54.98 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=97.4
Q ss_pred CcccccchhHHHHHHHhcCCCCCCC--cccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcC-
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNND--DVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITL- 237 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~--~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~- 237 (1422)
.++||-+.-...+.+.+....-... .-|. |+||||+|+-++.-.-- .-| ...++++.-...++|...-..
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC-----~~~-~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC-----ENG-PTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC-----CCC-CCCCcchhhhhhHhhhcCCccc
Confidence 3579999999999999876533211 1233 99999999988754211 111 111222222222222222000
Q ss_pred ----CCCCCCChhHHHHHHHHHh-----ccceeEEEeccCCCCCccchhhhhccCCCCCCCcE-EEEEcCChHHHHhhCC
Q 000559 238 ----SSCDFKDLNPVQVKLKQEV-----AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSK-IIVTTRDENVALTLGC 307 (1422)
Q Consensus 238 ----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~-ilvTtR~~~v~~~~~~ 307 (1422)
+......+++.. .|.+.. ++|-=..|+|.|.--....|..+..-+..-...-+ |+.||--..+....-+
T Consensus 90 viEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 90 VIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred chhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh
Confidence 000111222222 222222 34555888999965555677777665543323344 4556665666544433
Q ss_pred CCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc
Q 000559 308 PGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 308 ~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
.-..|.++.++.++-...+...+-. .+.. ...+...-|++..+|..
T Consensus 169 Rcq~f~fkri~~~~I~~~L~~i~~~-E~I~------~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 169 RCQRFDFKRLDLEEIAKHLAAILDK-EGIN------IEEDALSLIARAAEGSL 214 (515)
T ss_pred ccccccccCCCHHHHHHHHHHHHHh-cCCc------cCHHHHHHHHHHcCCCh
Confidence 3367899999999877777665522 1111 22334455666666644
No 224
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.29 E-value=0.3 Score=47.26 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=29.1
Q ss_pred hcCCCcccEEEecccccCcc-CccccCCCCcceeeecCccccccCc-ccccCcccceeecccccccCccc-ccccccccc
Q 000559 564 LSKFKKLRVLSLRNYYITEV-PNSIRLLTHLRYLNFSGTRICHIPE-SVGFLSHLQILLLKDCHRLKKLP-TNVENLIDL 640 (1422)
Q Consensus 564 ~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~n~i~~lp~-~~~~L~~L~~L~L~~~~~~~~lP-~~i~~L~~L 640 (1422)
|..+++|+.+.+.. .+..+ ...|..+.+|+.+.+.++ +..++. .|.+..+|+.+.+.+ .+..++ ..+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccc
Confidence 44444455555442 34444 233444445555555443 444432 244444455555533 222222 223445555
Q ss_pred CeEeecC
Q 000559 641 LYFDISG 647 (1422)
Q Consensus 641 ~~L~l~~ 647 (1422)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555543
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.14 E-value=0.11 Score=53.32 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=44.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||.||..+++....+++. +.|+++ .+++.. +.... .....++ .+ +.+. +-=||||||+-.
T Consensus 57 G~GKThLa~ai~~~~~~~g~~-v~f~~~------~~L~~~----l~~~~-~~~~~~~---~~-~~l~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 57 GTGKTHLAVAIANEAIRKGYS-VLFITA------SDLLDE----LKQSR-SDGSYEE---LL-KRLK-RVDLLILDDLGY 119 (178)
T ss_dssp TSSHHHHHHHHHHHHHHTT---EEEEEH------HHHHHH----HHCCH-CCTTHCH---HH-HHHH-TSSCEEEETCTS
T ss_pred hHHHHHHHHHHHHHhccCCcc-eeEeec------Cceecc----ccccc-cccchhh---hc-Cccc-cccEecccccce
Confidence 999999999998875433343 566643 333333 33221 1112222 22 2333 235888999966
Q ss_pred CCccchhh--hhccCCCC-CCCcEEEEEcCCh
Q 000559 271 KNYGLWEV--LKSPFMAG-APGSKIIVTTRDE 299 (1422)
Q Consensus 271 ~~~~~~~~--l~~~~~~~-~~gs~ilvTtR~~ 299 (1422)
.....|+. +...+... .++ .+||||...
T Consensus 120 ~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 120 EPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp S---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred eeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 54444532 11111111 123 688898764
No 226
>PRK06921 hypothetical protein; Provisional
Probab=90.82 E-value=0.41 Score=52.70 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=20.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCV 218 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~ 218 (1422)
|+|||+||.++++....+.-..++++++
T Consensus 127 G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 127 GSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 9999999999998764331334677764
No 227
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=0.041 Score=55.00 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=43.1
Q ss_pred cCcCCCcceEEecCCCCCcccccccccccCCccccceeccccccccCCCcCCCCCCCcccceeccCCCCCCC
Q 000559 1280 LHKLTSLRKLEIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKS 1351 (1422)
Q Consensus 1280 l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 1351 (1422)
+.++++++.|.+.+|..+....-+-+. +..++|+.|+|++|+.+++-...++..+++|+.|.|.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 445677777777777666554332111 14466777777777777666656666677777777766544433
No 228
>PRK07261 topology modulation protein; Provisional
Probab=90.60 E-value=0.5 Score=48.19 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=19.9
Q ss_pred ccc-cccHHHHHHHHhccccccc--CCcEEE
Q 000559 188 VNF-RVGKTTLARLVYNDLAVED--FNSRAW 215 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~~~~--F~~~~w 215 (1422)
+|. |.||||||+++........ .|...|
T Consensus 6 ~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 6 IGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 344 9999999999987654332 565666
No 229
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=90.47 E-value=0.44 Score=52.15 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=31.4
Q ss_pred cccHHHHHHHHhccccc----cc-CCcEEEEEEcCcccHHHHHHHHHHHhc
Q 000559 191 RVGKTTLARLVYNDLAV----ED-FNSRAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~----~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
|.|||+||.+++-.... .+ =..++||+....|...++. +|++...
T Consensus 48 gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 48 GSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred ccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 99999999888644322 12 2468999999999887765 4666553
No 230
>PRK06526 transposase; Provisional
Probab=90.36 E-value=0.31 Score=53.12 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=45.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||..+.+.....++. +.|+ ...++..++..... .... ...+++. .+.-+||+||+..
T Consensus 108 GtGKThLa~al~~~a~~~g~~-v~f~------t~~~l~~~l~~~~~-----~~~~---~~~l~~l--~~~dlLIIDD~g~ 170 (254)
T PRK06526 108 GTGKTHLAIGLGIRACQAGHR-VLFA------TAAQWVARLAAAHH-----AGRL---QAELVKL--GRYPLLIVDEVGY 170 (254)
T ss_pred CCchHHHHHHHHHHHHHCCCc-hhhh------hHHHHHHHHHHHHh-----cCcH---HHHHHHh--ccCCEEEEccccc
Confidence 999999999998765423243 3443 23344444433211 1111 1223322 2345899999964
Q ss_pred CCccchh--hhhccCCC-CCCCcEEEEEcCCh
Q 000559 271 KNYGLWE--VLKSPFMA-GAPGSKIIVTTRDE 299 (1422)
Q Consensus 271 ~~~~~~~--~l~~~~~~-~~~gs~ilvTtR~~ 299 (1422)
.....|. .+...+.. ...+ .+|+||...
T Consensus 171 ~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 171 IPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 3222222 22222211 1123 488888764
No 231
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.21 E-value=0.021 Score=59.17 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=90.0
Q ss_pred CccceEEeccCCCchhhhHhhcc----hhhHHHHHHhcc---ccc-------ccccccccCCcccceEeccCCCCCcccC
Q 000559 1147 EALQYLSIADCPQLESIAESFHD----NAALVFILIGNC---RKL-------QSVPNALHKLVSLDQMYIGNCPSLVSFP 1212 (1422)
Q Consensus 1147 ~~L~~L~L~~~~~~~~~~~~~~~----l~~L~~L~l~~~---~~~-------~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 1212 (1422)
..+.+++|++|.+.+.-..++++ -.+|+..+++.- ... ..+..++-.||.|+..+|++|..-..+|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 46889999999877665554443 233443333321 011 1122345567888888888876554444
Q ss_pred CC----CCCCCCCcEEEEecCCCCCcCcc-----cc---------CCCCccceeecccccCCCCCCccccccccccccCc
Q 000559 1213 DE----RLPNQNLRVIEISRCEELRPLPS-----GV---------ERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMP 1274 (1422)
Q Consensus 1213 ~~----~~~~~~L~~L~l~~n~~l~~~p~-----~~---------~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~ 1274 (1422)
+. ++..+.|.+|.+++|- +|.+.. ++ .+-|.|+.....+|....+ |..+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-s~~~----------- 176 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-SKEL----------- 176 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-cHHH-----------
Confidence 43 3344677777777654 444322 11 2234556666555522211 1100
Q ss_pred ccccccCcCCCcceEEecCCCCCcccccc-----cccccCCccccceeccccccccCCCcC----CCCCCCcccceeccC
Q 000559 1275 LSCWGLHKLTSLRKLEIRGCPGALSFPEV-----SVRMRLPTTLTELNIARFPMLHCLSSR----GFQNLTSLEYLSISE 1345 (1422)
Q Consensus 1275 ~~~~~l~~l~~L~~L~L~~~~~l~~~p~~-----~~~~~~l~~L~~L~l~~~~~l~~l~~~----~~~~l~~L~~L~l~~ 1345 (1422)
....+..-..|+++.+..|..- |++ ......+.+|+.|||.+|.... .... .+...+.|+.|.+.+
T Consensus 177 -~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~-~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 177 -SAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTL-EGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred -HHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhh-hhHHHHHHHhcccchhhhccccc
Confidence 0012333356777777665321 211 0012345677777777744221 1101 122334567777777
Q ss_pred C
Q 000559 1346 C 1346 (1422)
Q Consensus 1346 c 1346 (1422)
|
T Consensus 252 C 252 (388)
T COG5238 252 C 252 (388)
T ss_pred h
Confidence 6
No 232
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.20 E-value=4.3 Score=44.99 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=99.2
Q ss_pred CcccccchhHHHHHHHhcCCCCCC---Ccccc------------cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNN---DDVNF------------RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILR 226 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~---~~v~i------------GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~ 226 (1422)
..+=|-++.+++|.+.+.-+-... ..+|| |.|||-||++|+++.. .-|+.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrvvgS----- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRVVGS----- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEeccH-----
Confidence 345678888888888764432111 12222 9999999999999854 223333322
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHHHhc-cceeEEEeccCCCCC--------------ccchhhhhccCCCC--CCC
Q 000559 227 ISKAILESITLSSCDFKDLNPVQVKLKQEVA-GRKFLIVLDDVWSKN--------------YGLWEVLKSPFMAG--APG 289 (1422)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------------~~~~~~l~~~~~~~--~~g 289 (1422)
++.+..-++. ..+...+.+.-+ ..+..|.+|.++... +-.+-++...+..+ ...
T Consensus 220 ---ElVqKYiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 220 ---ELVQKYIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred ---HHHHHHhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 2233322221 122233333333 458899999885421 01122233333322 235
Q ss_pred cEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch----
Q 000559 290 SKIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL---- 361 (1422)
Q Consensus 290 s~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL---- 361 (1422)
-|||..|-..++.+.. |--+..+++..-+.+.-.+.|+-|+-... ....- ++ +.+++.|.|.-=
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dv---d~----e~la~~~~g~sGAdlk 362 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDV---DL----ELLARLTEGFSGADLK 362 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCc---CH----HHHHHhcCCCchHHHH
Confidence 6899988877765432 22357788885555556677777763321 11111 22 457777777763
Q ss_pred HHHHHHHHHhc
Q 000559 362 AARTLGGLLRC 372 (1422)
Q Consensus 362 ai~~~~~~l~~ 372 (1422)
|+.+=|++++-
T Consensus 363 aictEAGm~Ai 373 (406)
T COG1222 363 AICTEAGMFAI 373 (406)
T ss_pred HHHHHHhHHHH
Confidence 45566666653
No 233
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.10 E-value=1.1 Score=51.73 Aligned_cols=138 Identities=16% Similarity=0.107 Sum_probs=76.9
Q ss_pred cccccchhHHHHHHHhcCCCCCCC-c--ccc-cccHHHHHHHHhccccccc--------------------CCcEEEEEE
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNND-D--VNF-RVGKTTLARLVYNDLAVED--------------------FNSRAWVCV 218 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~~-~--v~i-GvGKTtLa~~v~~~~~~~~--------------------F~~~~wv~~ 218 (1422)
.++|-+....++..+......... . .|- |+||||+|..+++...-.. ...+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777777788887774432222 1 222 9999999999987643111 123444544
Q ss_pred cCccc---HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEE
Q 000559 219 SDDFD---ILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVT 295 (1422)
Q Consensus 219 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvT 295 (1422)
+.... ..+..+++.+....... .++.-++++|+++....+.-..+...+......+.+|++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 44433 23334444443322111 356779999999776555555555555555567788888
Q ss_pred cCC-hHHHHhhCCCCceeeCCC
Q 000559 296 TRD-ENVALTLGCPGECHNLEL 316 (1422)
Q Consensus 296 tR~-~~v~~~~~~~~~~~~l~~ 316 (1422)
|.. ..+.......-..+.+.+
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred cCChhhccchhhhcceeeecCC
Confidence 873 333333322224555655
No 234
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=89.69 E-value=0.3 Score=50.69 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=58.0
Q ss_pred ccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccccccc-CCcEEEEEE----cCcc-----cHHH----H
Q 000559 166 GRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVED-FNSRAWVCV----SDDF-----DILR----I 227 (1422)
Q Consensus 166 Gr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~-F~~~~wv~~----s~~~-----~~~~----~ 227 (1422)
.+..+-...++.|... ..|.+ |.|||.||.+.+-+.-..+ |+.++++.- ++.. +..+ .
T Consensus 4 p~~~~Q~~~~~al~~~----~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN----DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 4556666777777621 23322 9999999988876543334 888777642 1111 1110 1
Q ss_pred HHHHHHHhcCCCCCCCChhHHHHH------HHHHhccc---eeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC
Q 000559 228 SKAILESITLSSCDFKDLNPVQVK------LKQEVAGR---KFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD 298 (1422)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~ 298 (1422)
..-+.+.+..-. .....+.+... --.+++|+ ...||+|++.+....++..+... .+.|||||++--.
T Consensus 80 ~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 80 LRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp THHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 112222221110 11122221110 01234554 45999999988766666666544 4678999998654
Q ss_pred h
Q 000559 299 E 299 (1422)
Q Consensus 299 ~ 299 (1422)
.
T Consensus 156 ~ 156 (205)
T PF02562_consen 156 S 156 (205)
T ss_dssp -
T ss_pred e
Confidence 3
No 235
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.82 Score=54.70 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=40.8
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCc--ccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEecc
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDD--FDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDD 267 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 267 (1422)
|.|||+||+++++... +. .-++.+|+++.- ..+..+++.+-. .+.+.+...+-+|||||
T Consensus 441 GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~~~PSiIvLDd 502 (952)
T KOG0735|consen 441 GSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALWYAPSIIVLDD 502 (952)
T ss_pred CCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHhhCCcEEEEcc
Confidence 9999999999999876 44 556777776643 223333333222 23344556788999999
Q ss_pred CC
Q 000559 268 VW 269 (1422)
Q Consensus 268 v~ 269 (1422)
++
T Consensus 503 ld 504 (952)
T KOG0735|consen 503 LD 504 (952)
T ss_pred hh
Confidence 94
No 236
>PRK12377 putative replication protein; Provisional
Probab=89.51 E-value=0.57 Score=50.66 Aligned_cols=92 Identities=24% Similarity=0.111 Sum_probs=49.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||.++++... .....++++++. ++...+-..... ..... .+.+.+ .+-=|||+||+..
T Consensus 111 GtGKThLa~AIa~~l~-~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 111 GTGKNHLAAAIGNRLL-AKGRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CKVDLLVLDEIGI 174 (248)
T ss_pred CCCHHHHHHHHHHHHH-HcCCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cCCCEEEEcCCCC
Confidence 9999999999999865 333346777553 344444333321 11111 122222 3556999999955
Q ss_pred CCccchhh--hhccCCCC-CCCcEEEEEcCC
Q 000559 271 KNYGLWEV--LKSPFMAG-APGSKIIVTTRD 298 (1422)
Q Consensus 271 ~~~~~~~~--l~~~~~~~-~~gs~ilvTtR~ 298 (1422)
.....|+. +...+... .+.--+||||-.
T Consensus 175 ~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 175 QRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 43344542 32222211 123357888764
No 237
>PRK09183 transposase/IS protein; Provisional
Probab=89.43 E-value=0.52 Score=51.73 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=45.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||..+++.....+.. +.+++ ..++...+...... .. ....+++. ..+.-++|+||+..
T Consensus 112 GtGKThLa~al~~~a~~~G~~-v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~~dlLiiDdlg~ 175 (259)
T PRK09183 112 GVGKTHLAIALGYEAVRAGIK-VRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMAPRLLIIDEIGY 175 (259)
T ss_pred CCCHHHHHHHHHHHHHHcCCe-EEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcCCCEEEEccccc
Confidence 999999999997764322232 34443 22333333222110 11 11222222 23456999999965
Q ss_pred CCccchh--hhhccCCCC-CCCcEEEEEcCCh
Q 000559 271 KNYGLWE--VLKSPFMAG-APGSKIIVTTRDE 299 (1422)
Q Consensus 271 ~~~~~~~--~l~~~~~~~-~~gs~ilvTtR~~ 299 (1422)
.....+. .+...+... ..+ .+|+||...
T Consensus 176 ~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred CCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 4333332 233322211 124 488888754
No 238
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=89.42 E-value=0.97 Score=49.23 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=29.4
Q ss_pred cccHHHHHHHHhccccccc-----CCcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 191 RVGKTTLARLVYNDLAVED-----FNSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
|.|||++|.+++-...... ...++|++....++..++ .++++..
T Consensus 29 GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~ 77 (235)
T cd01123 29 GSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERF 77 (235)
T ss_pred CCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHh
Confidence 9999999999974432221 368999998887765444 3344443
No 239
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.39 E-value=0.72 Score=58.48 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=62.0
Q ss_pred CcccccchhHHHHHHHhcCCCC----CCCcc------cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDT----NNDDV------NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~----~~~~v------~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 230 (1422)
..++|-++.++.|.+.+..... ..+.+ |- |+|||++|+.++.... ...+.+++++-.... .
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~----~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERH----T 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC----CCcEEeechhhcccc----c
Confidence 3578999999998888863211 11222 22 9999999999988653 123445554322111 1
Q ss_pred HHHHhcCCCCC-CCChhHHHHHHHHHhccc-eeEEEeccCCCCCccchhhhhccCC
Q 000559 231 ILESITLSSCD-FKDLNPVQVKLKQEVAGR-KFLIVLDDVWSKNYGLWEVLKSPFM 284 (1422)
Q Consensus 231 i~~~l~~~~~~-~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~~~ 284 (1422)
+..-++.+..- ..+.. ..+.+.++.+ ..+++||++.....+.++.+...+.
T Consensus 530 ~~~LiG~~~gyvg~~~~---g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQG---GLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHHHcCCCCCccccccc---chHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 22222322111 11111 1233334433 4699999998777777777766554
No 240
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.35 E-value=3.9 Score=46.59 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=62.5
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCc
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREF 336 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 336 (1422)
+++-.+|+|+++..+...+..+...+..-.+++.+|++|.+ ..+.....+.-..+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 44558889999887777888887777655566766666655 44443433222678899999999988886641 0
Q ss_pred cccccccchHHHHHHHHHHhCCCchHHHHH
Q 000559 337 VASSRLCNSEFVRRKVVEKCKGLPLAARTL 366 (1422)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 366 (1422)
+ + ...++..++|.|.....+
T Consensus 206 ---~---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 ---A---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---C---h----HHHHHHHcCCCHHHHHHH
Confidence 0 1 123577889999755443
No 241
>PRK08181 transposase; Validated
Probab=89.29 E-value=0.46 Score=52.04 Aligned_cols=92 Identities=18% Similarity=0.119 Sum_probs=47.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||.||..+++... .....++|+++ .++..++..... ....+. .++ .+ .+-=|||+||+..
T Consensus 116 GtGKTHLa~Aia~~a~-~~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~---~l~-~l-~~~dLLIIDDlg~ 178 (269)
T PRK08181 116 GGGKSHLAAAIGLALI-ENGWRVLFTRT------TDLVQKLQVARR-----ELQLES---AIA-KL-DKFDLLILDDLAY 178 (269)
T ss_pred CCcHHHHHHHHHHHHH-HcCCceeeeeH------HHHHHHHHHHHh-----CCcHHH---HHH-HH-hcCCEEEEecccc
Confidence 9999999999988653 22234566643 344444433221 112222 222 22 2344999999955
Q ss_pred CCccchh--hhhccCCCCCCCcEEEEEcCCh
Q 000559 271 KNYGLWE--VLKSPFMAGAPGSKIIVTTRDE 299 (1422)
Q Consensus 271 ~~~~~~~--~l~~~~~~~~~gs~ilvTtR~~ 299 (1422)
.....|. .+...+...-.+..+||||...
T Consensus 179 ~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 179 VTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4333332 2333222211124699998764
No 242
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.25 E-value=0.24 Score=49.80 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=48.1
Q ss_pred cccccccceEEecccCCccchhhh---ccccCCceEEEccCcCccccchHhhhccCccceEEecCCC
Q 000559 972 LHSVASLRKLFVANCQSLVSFLEA---CFLSNLSELVIQNCSALISLNEVTKHNYLHLKSLQIEGCQ 1035 (1422)
Q Consensus 972 ~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~L~~~~~l~~~~~~~~~~l~~L~~L~L~~c~ 1035 (1422)
+.+++.++.|.+.+|..+.+..-. ...++|+.|+|++|+.+++..-.....+++|+.|.+.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 567788888888888877655432 2378888899998888888776666678888888887743
No 243
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=89.17 E-value=0.74 Score=46.61 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=28.3
Q ss_pred ccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccc
Q 000559 164 VYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 164 ~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~ 205 (1422)
+||....+.++++.+..-......|-| |.||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 478888888888877654333333434 999999999999853
No 244
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=89.13 E-value=5.5 Score=48.22 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=76.0
Q ss_pred ccccchhHHHHHHHhcC---CCCCCCcccc----cccHHHHHHHHhcccc-------cccCCcEEEEEEcCcccHHHHHH
Q 000559 164 VYGRDGDKAKVLDMVLS---HDTNNDDVNF----RVGKTTLARLVYNDLA-------VEDFNSRAWVCVSDDFDILRISK 229 (1422)
Q Consensus 164 ~vGr~~~~~~i~~~l~~---~~~~~~~v~i----GvGKTtLa~~v~~~~~-------~~~F~~~~wv~~s~~~~~~~~~~ 229 (1422)
+-+|+.+..+|-+.+.. +......+.| |.|||+.+..|.+... ...|+ .+.|+.-.-....++..
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHH
Confidence 55899998888887754 2122223333 9999999999987432 22365 35666666667889999
Q ss_pred HHHHHhcCCCCCCCChhHHHHHHHHHhc-----cceeEEEeccCCC---CCccchhhhhccCCC-CCCCcEEEEEc
Q 000559 230 AILESITLSSCDFKDLNPVQVKLKQEVA-----GRKFLIVLDDVWS---KNYGLWEVLKSPFMA-GAPGSKIIVTT 296 (1422)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~---~~~~~~~~l~~~~~~-~~~gs~ilvTt 296 (1422)
.|..++.+... .-....+.+..++. .+..++++|+++. ..++.+..+ |.| ..++||++|-+
T Consensus 477 ~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 477 KIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEEE
Confidence 99999976532 12223334444443 4567888887732 222222222 332 34678877754
No 245
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.06 E-value=1.4 Score=47.53 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=45.2
Q ss_pred cccHHHHHHHHhccccccc-----CCcEEEEEEcCcccHHHHHHHHHHHhcCCC---------CCCCChhHHHHHHHHHh
Q 000559 191 RVGKTTLARLVYNDLAVED-----FNSRAWVCVSDDFDILRISKAILESITLSS---------CDFKDLNPVQVKLKQEV 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~~l~~~l 256 (1422)
|.|||++|.+++....... =..++|++....++..++. ++++...... ....+.++....+++..
T Consensus 29 GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 107 (226)
T cd01393 29 GSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNGEQQLEIVEELE 107 (226)
T ss_pred CCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999876532111 1568999988777655443 3333322110 01234455555555544
Q ss_pred c----cceeEEEeccCC
Q 000559 257 A----GRKFLIVLDDVW 269 (1422)
Q Consensus 257 ~----~k~~LlVlDdv~ 269 (1422)
+ .+--++|+|.+.
T Consensus 108 ~~~~~~~~~lvVIDsis 124 (226)
T cd01393 108 RIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHhhcCCeeEEEEcCcc
Confidence 2 344588999874
No 246
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=3.3 Score=51.69 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=78.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCc-ccc-cccHHHHHHHHhcccccccC-----CcEEEEEEcCcccHHHHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDD-VNF-RVGKTTLARLVYNDLAVEDF-----NSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~-v~i-GvGKTtLa~~v~~~~~~~~F-----~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
+.++||++|+.++++.|.....+..+ ||= |||||++|.-++.+.-...- +..++. .| +..-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD-------~g~L 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LD-------LGSL 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ec-------HHHH
Confidence 45899999999999999876544332 333 99999988877776432211 122221 01 1111
Q ss_pred hcCCCCCCCChhHHHHHHHHHhc-cceeEEEeccCCCC---------CccchhhhhccCCCCCCCcEEEEEcCChHHHHh
Q 000559 235 ITLSSCDFKDLNPVQVKLKQEVA-GRKFLIVLDDVWSK---------NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~ 304 (1422)
..+.. -..+.++....+-+.++ .++..|++|.+... ..+.-.-++.++..+ .--.|=.||-++.- ..
T Consensus 238 vAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~EYR-k~ 314 (786)
T COG0542 238 VAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLDEYR-KY 314 (786)
T ss_pred hcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHHHHH-HH
Confidence 22121 12345555555544443 45899999987431 011222233333222 22234445543221 11
Q ss_pred hC------CCCceeeCCCCChhhHHHHHHHh
Q 000559 305 LG------CPGECHNLELLSDNDCWSVFKKH 329 (1422)
Q Consensus 305 ~~------~~~~~~~l~~l~~~~~~~lf~~~ 329 (1422)
.. -.-+.+.+..-+.+++...++-.
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 10 01155667777777777766543
No 247
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=88.95 E-value=0.19 Score=49.30 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=55.2
Q ss_pred cccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccc-c-CCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 165 YGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVE-D-FNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 165 vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~-~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
||+-..+.++.+.+..-......|-| |.||+++|+.++...... . |..+ +.... . .+++++
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~~---- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLEQ---- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHHH----
Confidence 46666677777666543332233433 999999999888764421 1 3221 00010 0 111111
Q ss_pred CCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCC-CCCCcEEEEEcCC
Q 000559 239 SCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMA-GAPGSKIIVTTRD 298 (1422)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~gs~ilvTtR~ 298 (1422)
.+.--|+++|+..-..+....+...+.. .....|+|.||+.
T Consensus 68 -------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 68 -------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp -------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred -------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 2455688999966554555555555542 2467799999875
No 248
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.81 E-value=3.2 Score=45.48 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=88.5
Q ss_pred CcccccchhHHHHHHHhcCC---CCCCCcccc---cccHHHHHHHHhcccccccCC-cEEEEEEcCccc-----HHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSH---DTNNDDVNF---RVGKTTLARLVYNDLAVEDFN-SRAWVCVSDDFD-----ILRISK 229 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~---~~~~~~v~i---GvGKTtLa~~v~~~~~~~~F~-~~~wv~~s~~~~-----~~~~~~ 229 (1422)
..++|-.++..++-.++... +....++.| |.|||+|...+..+ .+.|. ..+-|....... +..+.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 34788888888887777542 222344545 99999998877776 23343 334444444332 334444
Q ss_pred HHHHHhcCCCCCCCChhHHHHHHHHHhcc------ceeEEEeccCCCCCccc----hhhhhccC-CCCCCCcEEEEEcCC
Q 000559 230 AILESITLSSCDFKDLNPVQVKLKQEVAG------RKFLIVLDDVWSKNYGL----WEVLKSPF-MAGAPGSKIIVTTRD 298 (1422)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~~~~----~~~l~~~~-~~~~~gs~ilvTtR~ 298 (1422)
++..++....-...+..+....+-+.|+. -++..|+|..+--.... ...+...- ....+-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 44444433222223333444455555542 25788888774321110 11111111 123456778899996
Q ss_pred hHH-------HHhhCCCCceeeCCCCChhhHHHHHHHhh
Q 000559 299 ENV-------ALTLGCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 299 ~~v-------~~~~~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
... -...... .++-++.++-++...++++..
T Consensus 182 d~lE~LEKRVKSRFshr-~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHR-VIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccc-eeeccCCCChHHHHHHHHHHh
Confidence 432 2222222 356667777788888877665
No 249
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=88.81 E-value=0.65 Score=49.55 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh-ccCcHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000559 32 GIRAELKKWEKNLVMIQAVLEDAEEK-QLSNRAVKIWLDDLRALAYDVEDILDEQQ 86 (1422)
Q Consensus 32 ~v~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~~yd~ed~ld~~~ 86 (1422)
-++.++|-++.+++.+|.||+.-.+. ...-.....+..++-..||++|.++|.+.
T Consensus 318 flKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 318 FLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 35899999999999999999986433 33333488999999999999999999886
No 250
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=88.22 E-value=0.99 Score=48.73 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=24.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILR 226 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~ 226 (1422)
|.|||++|.+++.... ..-..++||+.. .++..+
T Consensus 33 GsGKT~l~~~la~~~~-~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 33 GSGKTNICLQLAVEAA-KNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCHHHHHHHHHHHHH-HCCCeEEEEECC-CCCHHH
Confidence 9999999999987643 224568999887 555444
No 251
>PRK04296 thymidine kinase; Provisional
Probab=88.17 E-value=0.39 Score=50.00 Aligned_cols=104 Identities=12% Similarity=0.003 Sum_probs=53.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCC--CCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCD--FKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|.||||+|..++.+....+. .++.+. ..++.......++.+++..... ....++....+++ ..++.-+||+|.+
T Consensus 12 GsGKTT~~l~~~~~~~~~g~-~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dvviIDEa 87 (190)
T PRK04296 12 NSGKSTELLQRAYNYEERGM-KVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDCVLIDEA 87 (190)
T ss_pred CCHHHHHHHHHHHHHHHcCC-eEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCEEEEEcc
Confidence 99999999888877642322 233332 1112222233445555432211 2233444444444 2334458999999
Q ss_pred CCCCccchhhhhccCCCCCCCcEEEEEcCChH
Q 000559 269 WSKNYGLWEVLKSPFMAGAPGSKIIVTTRDEN 300 (1422)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 300 (1422)
..-..++..++...+ ...|..||+|.++..
T Consensus 88 q~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 88 QFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred ccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 543222222233222 235789999998743
No 252
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=87.93 E-value=1.4 Score=50.20 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=33.0
Q ss_pred cccHHHHHHHHhccccc----cc-CCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 191 RVGKTTLARLVYNDLAV----ED-FNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~----~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
|.|||+|+.+++-.... .. -..++||+....|...++.+ +++.++.
T Consensus 136 GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 136 RSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 99999999888633221 12 35789999999999887654 5666654
No 253
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.71 E-value=1.4 Score=45.61 Aligned_cols=112 Identities=22% Similarity=0.327 Sum_probs=63.7
Q ss_pred CCcccccchhHHHHHHHhc---CCCCCCCcc--cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVL---SHDTNNDDV--NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~---~~~~~~~~v--~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
-..++|.+..++.+++-.. .+.....+. |. |.||++|++++.+....++-. -|.|.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr---LVEV~k~------------- 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR---LVEVDKE------------- 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe---EEEEcHH-------------
Confidence 3468999988888776442 222222332 33 999999999999876533222 3333322
Q ss_pred hcCCCCCCCChhHHHHHHHHHh--ccceeEEEeccCCCCC-ccchhhhhccCCCC---CCCcEEEEEcCC
Q 000559 235 ITLSSCDFKDLNPVQVKLKQEV--AGRKFLIVLDDVWSKN-YGLWEVLKSPFMAG---APGSKIIVTTRD 298 (1422)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-~~~~~~l~~~~~~~---~~gs~ilvTtR~ 298 (1422)
+..++. .|.+.| +.+||.|..||..-++ .+.+..++..+..+ .+...++..|.+
T Consensus 123 ------dl~~Lp----~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ------DLATLP----DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ------HHhhHH----HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 111111 222233 3679999999996653 34566677666532 334455555544
No 254
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=87.55 E-value=1.2 Score=50.16 Aligned_cols=46 Identities=26% Similarity=0.300 Sum_probs=32.5
Q ss_pred cccHHHHHHHHhccccc----cc-CCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 191 RVGKTTLARLVYNDLAV----ED-FNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~----~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
|+|||++|.+++-.... .. =..++||+....|+..++. ++++.++.
T Consensus 106 GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 106 RCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred CCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 99999999887632221 11 2478999999988888765 45666654
No 255
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.54 E-value=0.58 Score=48.77 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=43.6
Q ss_pred ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCc-ccHHHHHHHHHHHhcCCCCCC---CChhHHHHHHHHHhccce-e
Q 000559 188 VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-FDILRISKAILESITLSSCDF---KDLNPVQVKLKQEVAGRK-F 261 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~-~ 261 (1422)
||. |+||||.+..++.....+ -..+..|+.... ....+-++..++.++.+.... .+..+......+.++.++ =
T Consensus 7 vGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D 85 (196)
T PF00448_consen 7 VGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYD 85 (196)
T ss_dssp EESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSS
T ss_pred ECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCC
Confidence 344 999998777777665433 445778887543 345566777788887553222 223233322222233333 3
Q ss_pred EEEeccC
Q 000559 262 LIVLDDV 268 (1422)
Q Consensus 262 LlVlDdv 268 (1422)
++++|=.
T Consensus 86 ~vlIDT~ 92 (196)
T PF00448_consen 86 LVLIDTA 92 (196)
T ss_dssp EEEEEE-
T ss_pred EEEEecC
Confidence 7777765
No 256
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.46 E-value=1 Score=47.93 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=26.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISK 229 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 229 (1422)
|.|||++|.+++.... +.-..++||+... ++..++.+
T Consensus 22 GsGKT~l~~~~~~~~~-~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 22 GSGKTNICMILAVNAA-RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCHHHHHHHHHHHHH-hCCCeEEEEECCC-CCHHHHHH
Confidence 9999999999886642 2246789999876 55544433
No 257
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.43 E-value=0.34 Score=31.23 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=13.4
Q ss_pred CCCcceeeecCccccccCcc
Q 000559 590 LTHLRYLNFSGTRICHIPES 609 (1422)
Q Consensus 590 L~~L~~L~L~~n~i~~lp~~ 609 (1422)
|.+|++|+|++|+|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777777654
No 258
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.43 E-value=0.34 Score=31.23 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=13.4
Q ss_pred CCCcceeeecCccccccCcc
Q 000559 590 LTHLRYLNFSGTRICHIPES 609 (1422)
Q Consensus 590 L~~L~~L~L~~n~i~~lp~~ 609 (1422)
|.+|++|+|++|+|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777777654
No 259
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=87.35 E-value=3.3 Score=47.11 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=41.4
Q ss_pred ceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChH-HHHhhCCCCceeeCCCCChhhHHHHHHH
Q 000559 259 RKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDEN-VALTLGCPGECHNLELLSDNDCWSVFKK 328 (1422)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~~~~~~~~~l~~l~~~~~~~lf~~ 328 (1422)
++-.+|+|++..-+...-..+...+.....++.+|++|.+.. +.......-..+.+.+++.+++.+.+.+
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 333445688866554444445444433334566777776644 4433322226788999999998877754
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=87.22 E-value=6.1 Score=44.14 Aligned_cols=95 Identities=9% Similarity=0.070 Sum_probs=58.8
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc-CChHHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCc
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT-RDENVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREF 336 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~ 336 (1422)
+++=++|+||+..........+...+.....++.+|++| ....+.........++++.++++++..+.+....
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~------ 162 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN------ 162 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC------
Confidence 466788899986665556666776666555667777655 4444444443333789999999999887765431
Q ss_pred cccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 337 VASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 337 ~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
..++.+..++...+|.=-|+..
T Consensus 163 -------~~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 163 -------KEKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -------CChhHHHHHHHHcCCHHHHHHH
Confidence 1112355566666663344444
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.70 E-value=0.25 Score=48.54 Aligned_cols=81 Identities=22% Similarity=0.087 Sum_probs=41.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+||+.+++.... ...-+.++...+..++....--.-+.........-. .+ .+..++|||++..
T Consensus 9 G~GKt~l~~~la~~~~~----~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~---a~-----~~~~il~lDEin~ 76 (139)
T PF07728_consen 9 GTGKTTLARELAALLGR----PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVR---AM-----RKGGILVLDEINR 76 (139)
T ss_dssp SSSHHHHHHHHHHHHTC----EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCT---TH-----HEEEEEEESSCGG
T ss_pred CCCHHHHHHHHHHHhhc----ceEEEEeccccccccceeeeeecccccccccccccc---cc-----cceeEEEECCccc
Confidence 99999999999987521 233456777666655543221110000000000100 00 1789999999976
Q ss_pred CCccchhhhhccC
Q 000559 271 KNYGLWEVLKSPF 283 (1422)
Q Consensus 271 ~~~~~~~~l~~~~ 283 (1422)
.....++.+...+
T Consensus 77 a~~~v~~~L~~ll 89 (139)
T PF07728_consen 77 APPEVLESLLSLL 89 (139)
T ss_dssp --HHHHHTTHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5545555554444
No 262
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=86.60 E-value=1.2 Score=46.85 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=44.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCC-------CCCCCChhH-----HHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLS-------SCDFKDLNP-----VQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~l~~~l- 256 (1422)
|+|||+|+.++++... -+.++++-+++.. .+.++.+++...-..+ ..+...... ..-.+.+++
T Consensus 25 g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfr 101 (215)
T PF00006_consen 25 GVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEYFR 101 (215)
T ss_dssp TSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHHHh
Confidence 9999999999998753 3345888887654 5666666664431111 111111110 111223333
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
++|++|+++||+
T Consensus 102 d~G~dVlli~Dsl 114 (215)
T PF00006_consen 102 DQGKDVLLIIDSL 114 (215)
T ss_dssp HTTSEEEEEEETH
T ss_pred hcCCceeehhhhh
Confidence 589999999999
No 263
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.40 E-value=1.6 Score=46.92 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=23.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCccc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFD 223 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~ 223 (1422)
|+||||+|.+++.... ..-..++|++....+.
T Consensus 29 GsGKT~l~~~~a~~~~-~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 29 GTGKTNIAIQLAVETA-GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCCHHHHHHHHHHHHH-hcCCeEEEEECCCCCH
Confidence 9999999999887643 2234578888765554
No 264
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=86.28 E-value=1.4 Score=48.72 Aligned_cols=126 Identities=23% Similarity=0.304 Sum_probs=64.0
Q ss_pred cccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHh--ccccccc-CCcEEE----EEEcCccc---------H
Q 000559 165 YGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVY--NDLAVED-FNSRAW----VCVSDDFD---------I 224 (1422)
Q Consensus 165 vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~--~~~~~~~-F~~~~w----v~~s~~~~---------~ 224 (1422)
-+|..+..--+++|++++. ..|++ |.|||.||.+.. +-.. ++ |..++- |.++++.. +
T Consensus 227 ~prn~eQ~~ALdlLld~dI--~lV~L~G~AGtGKTlLALaAgleqv~e-~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDI--DLVSLGGKAGTGKTLLALAAGLEQVLE-RKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred CcccHHHHHHHHHhcCCCC--CeEEeeccCCccHhHHHHHHHHHHHHH-HhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 3466777777888887655 34443 999998875543 3222 33 543322 33443321 1
Q ss_pred HHHHHHHHHHhcCCCC-CCCChhHHHHHH-H---------HHhccc---eeEEEeccCCCCCccchhhhhccCCCCCCCc
Q 000559 225 LRISKAILESITLSSC-DFKDLNPVQVKL-K---------QEVAGR---KFLIVLDDVWSKNYGLWEVLKSPFMAGAPGS 290 (1422)
Q Consensus 225 ~~~~~~i~~~l~~~~~-~~~~~~~~~~~l-~---------~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs 290 (1422)
.--++.|.+-+..-.. +... +...+.+ . .+.+++ +-++|+|.+.+-... +++..+...+.||
T Consensus 304 ~PWmq~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G~Gs 379 (436)
T COG1875 304 GPWMQAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAGEGS 379 (436)
T ss_pred cchHHHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhccCCC
Confidence 1122233332221100 1111 1111111 1 123444 458999999775443 4444455567999
Q ss_pred EEEEEcC
Q 000559 291 KIIVTTR 297 (1422)
Q Consensus 291 ~ilvTtR 297 (1422)
||+.|--
T Consensus 380 KIVl~gd 386 (436)
T COG1875 380 KIVLTGD 386 (436)
T ss_pred EEEEcCC
Confidence 9999875
No 265
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=1.4 Score=51.85 Aligned_cols=91 Identities=16% Similarity=0.303 Sum_probs=55.1
Q ss_pred CcccccchhHHHHHHHhcCCCCCC----------Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNN----------DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRI 227 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~----------~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~ 227 (1422)
..+=|.+..+.++.+++..-.... +.|-+ |.|||.||++++++..+- ++.++-+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP------f~~isAp------ 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP------FLSISAP------ 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc------eEeecch------
Confidence 456788988888888876532211 11212 999999999999987643 3333322
Q ss_pred HHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCC
Q 000559 228 SKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSK 271 (1422)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 271 (1422)
+|+..+.+ .+.+.+.+...+.-..-++++++|+++..
T Consensus 258 --eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 --EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred --hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 22333322 22333333444444567999999999653
No 266
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.17 E-value=5.5 Score=51.48 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=87.3
Q ss_pred CCcccccchhHHHHHHHhcCCCC-----------CCCcc---cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDT-----------NNDDV---NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDIL 225 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~-----------~~~~v---~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~ 225 (1422)
-..+.|.+..++++.+.+.-.-. ..+.+ |- |.|||++|+++++..... | +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~-f-----i~v~~~---- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN-F-----IAVRGP---- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC-E-----EEEehH----
Confidence 34577888888877776642110 01112 22 999999999999975421 2 222211
Q ss_pred HHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCC------c-c-----chhhhhccCCC--CCCCcE
Q 000559 226 RISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKN------Y-G-----LWEVLKSPFMA--GAPGSK 291 (1422)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~-~-----~~~~l~~~~~~--~~~gs~ 291 (1422)
+++...- ......+.......-+..+.+|++|+++.-. . . ....+...+.. ...+--
T Consensus 522 ----~l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 ----EILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred ----HHhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1111111 1111112222222224567899999985310 0 0 11122222221 123445
Q ss_pred EEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc
Q 000559 292 IIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 292 ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
||.||...+..+.. +-.+..+.+...+.++-.++|+.+.-+. ...... + ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~---~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDV---D----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccC---C----HHHHHHHcCCCC
Confidence 66677665543221 1224678888889898888987665221 111111 2 355677777765
No 267
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=86.16 E-value=1.5 Score=47.68 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred cccHHHHHHHHhccccc--cc-CCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCC-----CCCC--hh-----HHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAV--ED-FNSRAWVCVSDDF-DILRISKAILESITLSSC-----DFKD--LN-----PVQVKLKQ 254 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~--~~-F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~-----~~~~~l~~ 254 (1422)
|+|||+|+..+.++... +. -+.++++-+++.. .+.++..++.+.=..... ..++ .. -....+.+
T Consensus 79 GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAE 158 (276)
T cd01135 79 GLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAE 158 (276)
T ss_pred CCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999887541 12 4678888888754 456666665553211110 1111 11 11123455
Q ss_pred Hhc---cceeEEEeccC
Q 000559 255 EVA---GRKFLIVLDDV 268 (1422)
Q Consensus 255 ~l~---~k~~LlVlDdv 268 (1422)
+++ +|++|+++||+
T Consensus 159 yfrd~~g~~VLl~~D~l 175 (276)
T cd01135 159 YLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHhccCCeEEEEEcCh
Confidence 553 68999999999
No 268
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=85.90 E-value=1.8 Score=48.96 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=30.3
Q ss_pred cccHHHHHHHHhccccc---cc--CCcEEEEEEcCcccHHHHHHHHHHHhc
Q 000559 191 RVGKTTLARLVYNDLAV---ED--FNSRAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~---~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
|.||||+|.+++..... .+ -..++||+....+...++ .++++.++
T Consensus 106 g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 106 RTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 99999999988753221 11 236799998887777663 44555554
No 269
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=85.82 E-value=1.8 Score=49.60 Aligned_cols=130 Identities=11% Similarity=0.026 Sum_probs=66.3
Q ss_pred cccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
.++|+...+.++.+.+..-......|-| |.||+++|+.++..-. +.-..-+.|++..-.+ ..+...+...-...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~-r~~~pfv~v~c~~~~~-~~~~~~lfg~~~~~ 84 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS-RWQGPFISLNCAALNE-NLLDSELFGHEAGA 84 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC-ccCCCeEEEeCCCCCH-HHHHHHHccccccc
Confidence 5889999998888887664443334444 9999999999885422 1112334455544221 22222222111000
Q ss_pred CCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEEcCCh
Q 000559 239 SCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVTTRDE 299 (1422)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~~ 299 (1422)
...... .....+. ....=.|+||||..-.......+...+..+. ...|||.||...
T Consensus 85 ~~g~~~--~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 85 FTGAQK--RHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cCCccc--ccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 000000 0001111 2233468899997655455555555443221 135888887653
No 270
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=85.68 E-value=2.2 Score=53.99 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=68.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCC----Ccccc------cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNN----DDVNF------RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAI 231 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~----~~v~i------GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 231 (1422)
..++|-++.+..|.+.+.....+. ..+.. |+|||-||++++.-.- ...+..+-|++|+ .+. +
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F-gse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF-GSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc-CCccceEEechhh------hhh-h
Confidence 357888888888888887654322 12222 9999999999887531 2245556665544 233 3
Q ss_pred HHHhcCCCCCCCChhHHHHHHHHHhcccee-EEEeccCCCCCccchhhhhccCCC
Q 000559 232 LESITLSSCDFKDLNPVQVKLKQEVAGRKF-LIVLDDVWSKNYGLWEVLKSPFMA 285 (1422)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~ 285 (1422)
.+.++.+.. ... .+....+.+.+++++| .|.||||...+.+....+...+..
T Consensus 634 skligsp~g-yvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 634 SKLIGSPPG-YVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhccCCCcc-ccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 333333221 111 1222367778888876 566899977766666655555543
No 271
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=85.23 E-value=2.2 Score=54.68 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=67.7
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
..++|+...+.++.+.+..-......|-| |.|||++|+.+++... +.-...+.+++..-.. ..+...+......
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~ 453 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG-RNNRRMVKMNCAAMPA-GLLESDLFGHERG 453 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC-CCCCCeEEEecccCCh-hHhhhhhcCcccc
Confidence 46899999998887777643333333434 9999999999987643 1222344555443221 1111111111110
Q ss_pred CCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCC-----------CCCcEEEEEcCCh
Q 000559 238 SSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAG-----------APGSKIIVTTRDE 299 (1422)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~ilvTtR~~ 299 (1422)
..... .......+ -....-.|+||||..-..+....+...+..+ ..+.|||.||...
T Consensus 454 ~~~g~--~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 454 AFTGA--SAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccc--ccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 00000 00111111 1223457999999765545555555544321 1245899888654
No 272
>PRK13695 putative NTPase; Provisional
Probab=85.03 E-value=0.41 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=17.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWV 216 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv 216 (1422)
|+|||||++.+++.....++....|+
T Consensus 10 G~GKTTll~~i~~~l~~~G~~~~g~~ 35 (174)
T PRK13695 10 GVGKTTLVLKIAELLKEEGYKVGGFY 35 (174)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999998876542235434444
No 273
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=84.88 E-value=4.5 Score=39.84 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=49.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|.|||||++.+...... ..+.+|+.-.. .+.--. +...-+...-.+.+.+..+.-++++|+--.
T Consensus 36 GsGKStLl~~l~G~~~~--~~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 36 GAGKSTLLKLIAGELEP--DEGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCHHHHHHHHcCCCCC--CceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999876421 23344432100 000000 011111222235566667778999998744
Q ss_pred C-CccchhhhhccCCCCCCCcEEEEEcCChHHHHh
Q 000559 271 K-NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 271 ~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~ 304 (1422)
. +....+.+...+... +..||++|.+...+..
T Consensus 100 ~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 100 HLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 3 222333343333322 2468888887666543
No 274
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.87 E-value=5.5 Score=51.52 Aligned_cols=174 Identities=18% Similarity=0.151 Sum_probs=84.4
Q ss_pred CcccccchhHHHHHHHhcCCC-----------CCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHD-----------TNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILR 226 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~-----------~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~ 226 (1422)
..+.|.++.+++|.+++...- ...+.+-+ |.|||++|+.+++..... | +.++.+ +
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-~---i~i~~~------~ 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-F---ISINGP------E 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-E---EEEecH------H
Confidence 458899999999888764321 01122222 999999999999864311 2 222211 1
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCc------c-----chhhhhccCCCC-CCCcEEEE
Q 000559 227 ISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNY------G-----LWEVLKSPFMAG-APGSKIIV 294 (1422)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~-----~~~~l~~~~~~~-~~gs~ilv 294 (1422)
+ ..... ......+...+.........+|++|++..... . ....+...+... ..+..++|
T Consensus 248 i----~~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 I----MSKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred H----hcccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 1 10000 01111222223333345668999999844210 0 112232222211 12334444
Q ss_pred -EcCChHH-HHhh---CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchH
Q 000559 295 -TTRDENV-ALTL---GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLA 362 (1422)
Q Consensus 295 -TtR~~~v-~~~~---~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 362 (1422)
||....- ...+ +-....+.+...+.++-.+++..+.-.. .... .....++++.+.|.--|
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~-------d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAE-------DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcc-------ccCHHHHHHhCCCCCHH
Confidence 5544321 1111 1112567778788888888887554211 1100 11246677888886544
No 275
>CHL00195 ycf46 Ycf46; Provisional
Probab=84.76 E-value=4.3 Score=48.77 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=62.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|.|||.+|+.+++..... | +-++++. + .... .......+...++..-...+++|++|+++.
T Consensus 269 GTGKTllAkaiA~e~~~~-~---~~l~~~~------l----~~~~-----vGese~~l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 269 GTGKSLTAKAIANDWQLP-L---LRLDVGK------L----FGGI-----VGESESRMRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred CCcHHHHHHHHHHHhCCC-E---EEEEhHH------h----cccc-----cChHHHHHHHHHHHHHhcCCcEEEehhhhh
Confidence 999999999999875422 1 1222211 1 1000 001111111222222235689999999953
Q ss_pred CCc-------c-ch----hhhhccCCCCCCCcEEEEEcCChHHHH-hh---CCCCceeeCCCCChhhHHHHHHHhhhc
Q 000559 271 KNY-------G-LW----EVLKSPFMAGAPGSKIIVTTRDENVAL-TL---GCPGECHNLELLSDNDCWSVFKKHAFA 332 (1422)
Q Consensus 271 ~~~-------~-~~----~~l~~~~~~~~~gs~ilvTtR~~~v~~-~~---~~~~~~~~l~~l~~~~~~~lf~~~a~~ 332 (1422)
.-. . .- ..+...+.....+--||.||....... .+ |-.+..+.++.-+.++-.++|..+...
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 200 0 00 111111222223444666776554221 11 222467889888999999999887743
No 276
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=84.68 E-value=2.5 Score=47.44 Aligned_cols=73 Identities=21% Similarity=0.130 Sum_probs=45.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC-----CCCCCChhHHHHHHHHHhc-cceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS-----SCDFKDLNPVQVKLKQEVA-GRKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l~-~k~~LlV 264 (1422)
|.||||||.+++-... +.-..++||+..+.++.. .+++++.. .....+.++....+....+ +.--++|
T Consensus 65 GsGKTtLal~~~~~~~-~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIV 138 (325)
T cd00983 65 SSGKTTLALHAIAEAQ-KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIV 138 (325)
T ss_pred CCCHHHHHHHHHHHHH-HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 9999999998876532 224568899988877753 33444322 1123345555555555554 3466899
Q ss_pred eccCC
Q 000559 265 LDDVW 269 (1422)
Q Consensus 265 lDdv~ 269 (1422)
+|-|-
T Consensus 139 IDSva 143 (325)
T cd00983 139 VDSVA 143 (325)
T ss_pred EcchH
Confidence 99873
No 277
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=84.52 E-value=2.2 Score=47.87 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=46.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCC-----CCCCChhHHHHHHHHHhc-cceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSS-----CDFKDLNPVQVKLKQEVA-GRKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~~~l~-~k~~LlV 264 (1422)
|.||||||.+++.... +.-..++||+..+.++.. .+++++... ......++....+....+ +.--++|
T Consensus 65 GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIV 138 (321)
T TIGR02012 65 SSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIV 138 (321)
T ss_pred CCCHHHHHHHHHHHHH-HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEE
Confidence 9999999998876543 224567899887776653 344444321 123345555555555554 4566899
Q ss_pred eccCC
Q 000559 265 LDDVW 269 (1422)
Q Consensus 265 lDdv~ 269 (1422)
+|-|-
T Consensus 139 IDSv~ 143 (321)
T TIGR02012 139 VDSVA 143 (321)
T ss_pred Ecchh
Confidence 99984
No 278
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.23 E-value=1.9 Score=47.10 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=41.6
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||.||.++.+... +.=-.+.+++ ..++..++...... .....++.+.++ +-=||||||+-.
T Consensus 115 G~GKThLa~Ai~~~l~-~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 115 GVGKTHLAIAIGNELL-KAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred CCcHHHHHHHHHHHHH-HcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhh-cCCEEEEecccC
Confidence 9999999999999876 4422356664 34555555555432 111112222221 233899999966
Q ss_pred CCccchh
Q 000559 271 KNYGLWE 277 (1422)
Q Consensus 271 ~~~~~~~ 277 (1422)
.....|.
T Consensus 179 ~~~~~~~ 185 (254)
T COG1484 179 EPFSQEE 185 (254)
T ss_pred ccCCHHH
Confidence 5445554
No 279
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=84.10 E-value=3.2 Score=47.33 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=31.5
Q ss_pred cccHHHHHHHHhccccccc-----CCcEEEEEEcCcccHHHHHHHHHHHhc
Q 000559 191 RVGKTTLARLVYNDLAVED-----FNSRAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
|.|||++|.+++-...... =..++||+..+.++..++. ++++.++
T Consensus 112 GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 112 GSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 9999999999875532211 1478999999988877654 3445543
No 280
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.08 E-value=2.7 Score=42.26 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=31.5
Q ss_pred HHHHHhccce-eEEEeccCCCC---CccchhhhhccCCCCCCCcEEEEEcCChH
Q 000559 251 KLKQEVAGRK-FLIVLDDVWSK---NYGLWEVLKSPFMAGAPGSKIIVTTRDEN 300 (1422)
Q Consensus 251 ~l~~~l~~k~-~LlVlDdv~~~---~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 300 (1422)
..++.+...+ =++|||.+-.. ..-..+++...+.....+..||+|-|+..
T Consensus 88 ~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 88 HAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3444454444 49999998321 12334556666655666789999999863
No 281
>PRK09354 recA recombinase A; Provisional
Probab=84.02 E-value=2.7 Score=47.61 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=47.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC-----CCCCCChhHHHHHHHHHhc-cceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS-----SCDFKDLNPVQVKLKQEVA-GRKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l~-~k~~LlV 264 (1422)
|.||||||.+++.... +.-..++||+....++.. .+++++.. .......++....+...++ ++--+||
T Consensus 70 GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIV 143 (349)
T PRK09354 70 SSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIV 143 (349)
T ss_pred CCCHHHHHHHHHHHHH-HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEE
Confidence 9999999998876543 224568999998887753 34444432 1123345555555555554 4566899
Q ss_pred eccCC
Q 000559 265 LDDVW 269 (1422)
Q Consensus 265 lDdv~ 269 (1422)
+|-|-
T Consensus 144 IDSva 148 (349)
T PRK09354 144 VDSVA 148 (349)
T ss_pred EeChh
Confidence 99984
No 282
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=83.98 E-value=2.2 Score=49.79 Aligned_cols=83 Identities=10% Similarity=0.210 Sum_probs=50.8
Q ss_pred Ccccc----cccHHHHHHHHhccccccc---CC---------cEEEEEEcCcccHHHHHHHHHHHhc-CCCC-------C
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVED---FN---------SRAWVCVSDDFDILRISKAILESIT-LSSC-------D 241 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~---F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~-------~ 241 (1422)
..++| |+|||||+.+++++..... .| .++++-+++.....+.+.+.+..-+ .... +
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 34555 9999999999987754100 22 5678888888666666666665544 2111 1
Q ss_pred CCChh-----HHHHHHHHHhc---cceeEEEeccC
Q 000559 242 FKDLN-----PVQVKLKQEVA---GRKFLIVLDDV 268 (1422)
Q Consensus 242 ~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv 268 (1422)
..... -....+.++++ ++++|+++||+
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Dsl 256 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDM 256 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccCh
Confidence 11111 11223555555 68999999999
No 283
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=83.91 E-value=2.3 Score=52.17 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=29.8
Q ss_pred cccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcc
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYND 204 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~ 204 (1422)
.++|.+..++.+...+..... ..|-+ |+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~--~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNP--QHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCC--ceEEEECCCCCCHHHHHHHHHHH
Confidence 589999999999887754322 22222 99999999999764
No 284
>PTZ00185 ATPase alpha subunit; Provisional
Probab=83.63 E-value=3.8 Score=48.25 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=44.1
Q ss_pred cccHHHHH-HHHhccccc------ccCCcEEEEEEcCcccHHHHHHHHHHHhc-CCCC-----CCCChhH-------HHH
Q 000559 191 RVGKTTLA-RLVYNDLAV------EDFNSRAWVCVSDDFDILRISKAILESIT-LSSC-----DFKDLNP-------VQV 250 (1422)
Q Consensus 191 GvGKTtLa-~~v~~~~~~------~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~-----~~~~~~~-------~~~ 250 (1422)
|+|||+|| ..+.++..+ +.-+.++++-+++...-..-+.+.+++-+ .... ..++... ...
T Consensus 199 GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a~ 278 (574)
T PTZ00185 199 QTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSGV 278 (574)
T ss_pred CCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHHH
Confidence 99999997 666776522 12456788888887543332344444333 1111 1111110 112
Q ss_pred HHHHHh--ccceeEEEeccCC
Q 000559 251 KLKQEV--AGRKFLIVLDDVW 269 (1422)
Q Consensus 251 ~l~~~l--~~k~~LlVlDdv~ 269 (1422)
.+.+++ +++.+|+|+||+-
T Consensus 279 tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 279 TMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHcCCCEEEEEcCch
Confidence 234444 4889999999994
No 285
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=83.60 E-value=2.1 Score=48.90 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=29.1
Q ss_pred ccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccc
Q 000559 164 VYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 164 ~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~ 205 (1422)
+||....+.++.+.+..-......|-| |.||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 467777777777777654433333444 999999999998653
No 286
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=83.51 E-value=0.63 Score=52.54 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=34.4
Q ss_pred cccccchhHHHHHHHhcCCCC----CCCcccc----cccHHHHHHHHhcccc
Q 000559 163 AVYGRDGDKAKVLDMVLSHDT----NNDDVNF----RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~----~~~~v~i----GvGKTtLa~~v~~~~~ 206 (1422)
.++|.++.++++++++..... ..+++.+ |.||||||+.+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999976432 2234444 9999999999987754
No 287
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=83.48 E-value=3 Score=49.09 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=46.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~~l~~~l- 256 (1422)
|+|||||+.+++.......=+.++++-+++.. .+.++.+++...=.... .+..... .....+.+++
T Consensus 154 GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfr 233 (463)
T PRK09280 154 GVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFR 233 (463)
T ss_pred CCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988765431112357777777654 46666666665322111 1111111 1122355555
Q ss_pred --ccceeEEEeccC
Q 000559 257 --AGRKFLIVLDDV 268 (1422)
Q Consensus 257 --~~k~~LlVlDdv 268 (1422)
++|++|+++||+
T Consensus 234 d~~G~~VLll~Dsl 247 (463)
T PRK09280 234 DVEGQDVLLFIDNI 247 (463)
T ss_pred HhcCCceEEEecch
Confidence 579999999999
No 288
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=83.39 E-value=3.7 Score=46.84 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=32.7
Q ss_pred cccHHHHHHHHhccccc---c-c-CCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 191 RVGKTTLARLVYNDLAV---E-D-FNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~---~-~-F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
|+|||++|.+++-.... . . -..++||+....|...++ .+|++.++.
T Consensus 133 g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 133 RTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 99999999888743221 1 1 236999999999988776 455666653
No 289
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.35 E-value=1.4 Score=49.91 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=47.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||.||..+++....+++ .++++++.. ++..+...-. . ...+... . .+.+. +-=|||+||+..
T Consensus 193 GtGKThLa~aIa~~l~~~g~-~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~---~-~~~l~-~~DLLIIDDlG~ 257 (329)
T PRK06835 193 GTGKTFLSNCIAKELLDRGK-SVIYRTADE------LIEILREIRF-N--NDKELEE---V-YDLLI-NCDLLIIDDLGT 257 (329)
T ss_pred CCcHHHHHHHHHHHHHHCCC-eEEEEEHHH------HHHHHHHHHh-c--cchhHHH---H-HHHhc-cCCEEEEeccCC
Confidence 99999999999997643324 466665432 3333322111 0 0111111 1 12222 224899999965
Q ss_pred CCccchh--hhhccCCCC-CCCcEEEEEcCC
Q 000559 271 KNYGLWE--VLKSPFMAG-APGSKIIVTTRD 298 (1422)
Q Consensus 271 ~~~~~~~--~l~~~~~~~-~~gs~ilvTtR~ 298 (1422)
.....|. .+...+... ..+-.+||||..
T Consensus 258 e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 258 EKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 5434443 232222211 234568898875
No 290
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=83.26 E-value=4.8 Score=41.42 Aligned_cols=53 Identities=13% Similarity=-0.034 Sum_probs=31.0
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCCCCCCcEEEEEcCChHHHH
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMAGAPGSKIIVTTRDENVAL 303 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 303 (1422)
.+.+.+..++=++++|+.... +....+.+...+.....+..||++|.+.....
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 455666677889999998554 11222223222222123677888888877664
No 291
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=82.80 E-value=6 Score=40.81 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=56.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEE---EcCcccHHHH------HHHHHHHhcCCCC---CCCC---hhHHHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVC---VSDDFDILRI------SKAILESITLSSC---DFKD---LNPVQVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~~---~~~~---~~~~~~~l~~~ 255 (1422)
|.|||||++.++.... ...+.+++. +.. .+.... .-++++.++.... .... -+...-.+.+.
T Consensus 35 GsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~lara 111 (180)
T cd03214 35 GAGKSTLLKTLAGLLK--PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARA 111 (180)
T ss_pred CCCHHHHHHHHhCCCC--CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHH
Confidence 9999999999987532 134444432 221 111111 1124555543311 1111 12222345666
Q ss_pred hccceeEEEeccCCCC-CccchhhhhccCCCC-CC-CcEEEEEcCChHHHHh
Q 000559 256 VAGRKFLIVLDDVWSK-NYGLWEVLKSPFMAG-AP-GSKIIVTTRDENVALT 304 (1422)
Q Consensus 256 l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~-~~-gs~ilvTtR~~~v~~~ 304 (1422)
+...+-++++|+--.. +....+.+...+... .. |..||++|.+......
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 7778889999987443 222233333333221 12 6688888887765533
No 292
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.71 E-value=2 Score=44.27 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=18.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWV 216 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv 216 (1422)
|.||||+|+.++.... ..+..++++
T Consensus 17 GsGKst~a~~l~~~l~-~~~~~~~~~ 41 (176)
T PRK05541 17 GSGKTTIAKALYERLK-LKYSNVIYL 41 (176)
T ss_pred CCCHHHHHHHHHHHHH-HcCCcEEEE
Confidence 9999999999998754 235555555
No 293
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=82.62 E-value=17 Score=45.35 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=93.8
Q ss_pred CCcccccchhHHH---HHHHhcCCCC--------CCCcc--cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHH
Q 000559 161 EPAVYGRDGDKAK---VLDMVLSHDT--------NNDDV--NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILR 226 (1422)
Q Consensus 161 ~~~~vGr~~~~~~---i~~~l~~~~~--------~~~~v--~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~ 226 (1422)
-.++.|.++.+++ +++.|..++. ..+++ |- |.|||-||++++-...+. |++++..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP------F~svSGS----- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------FFSVSGS----- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc------eeeechH-----
Confidence 3467787765555 5555554321 11221 22 999999999999987643 4444432
Q ss_pred HHHHHHHHhcCCCCCCCChhHHHHHHHHHh----ccceeEEEeccCCCCC---------------ccchhhhhccCCCCC
Q 000559 227 ISKAILESITLSSCDFKDLNPVQVKLKQEV----AGRKFLIVLDDVWSKN---------------YGLWEVLKSPFMAGA 287 (1422)
Q Consensus 227 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~~---------------~~~~~~l~~~~~~~~ 287 (1422)
+..+.+.... ..+++..+ ...++.+.+|+++... ...++++..-...+.
T Consensus 379 ---EFvE~~~g~~---------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ---EFVEMFVGVG---------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ---HHHHHhcccc---------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 2222222110 11222222 2456788888874421 112233333333322
Q ss_pred CCc--EEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 288 PGS--KIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 288 ~gs--~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
.++ -++-+|...++.+.. |-.+..+.++.-+...-.++|.-++-...-. . +..++++ |+..--|.+=
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~---e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---D---EDVDLSK-LASLTPGFSG 519 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---c---chhhHHH-HHhcCCCCcH
Confidence 233 334467666665332 2234778888888889999999888432211 1 3445555 8888888776
Q ss_pred HHH
Q 000559 362 AAR 364 (1422)
Q Consensus 362 ai~ 364 (1422)
|..
T Consensus 520 adl 522 (774)
T KOG0731|consen 520 ADL 522 (774)
T ss_pred HHH
Confidence 543
No 294
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=82.57 E-value=3.4 Score=50.64 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=70.0
Q ss_pred CCcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhc
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
...++|+...+.++.+.+..-......|-| |+|||++|+.+++.-. +.-...+.|++..-++ ..+..++.....
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~-r~~~p~v~v~c~~~~~-~~~e~~lfG~~~ 263 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP-RADKPLVYLNCAALPE-SLAESELFGHVK 263 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-cCCCCeEEEEcccCCh-HHHHHHhcCccc
Confidence 456899999999988888765444444444 9999999999987632 1122345566554332 111112211111
Q ss_pred CCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEEcCCh
Q 000559 237 LSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVTTRDE 299 (1422)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~~ 299 (1422)
+....... .....+. ....-.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 264 g~~~ga~~--~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 264 GAFTGAIS--NRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cccCCCcc--cCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 10000000 0000111 1223357999997665555556655543321 245899888654
No 295
>PHA02244 ATPase-like protein
Probab=82.56 E-value=2.9 Score=47.39 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=14.1
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|+|||++|+++++...
T Consensus 129 GtGKTtLA~aLA~~lg 144 (383)
T PHA02244 129 GSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999998743
No 296
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=82.29 E-value=1.1 Score=42.90 Aligned_cols=38 Identities=21% Similarity=0.077 Sum_probs=24.1
Q ss_pred hhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccc
Q 000559 169 GDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 169 ~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~ 206 (1422)
++.+++-+.+...-....+|.+ |.||||+++.++....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3444555555443233345555 9999999999998654
No 297
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=82.26 E-value=4.3 Score=46.30 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=31.7
Q ss_pred cccHHHHHHHHhcccccc----c-CCcEEEEEEcCcccHHHHHHHHHHHhc
Q 000559 191 RVGKTTLARLVYNDLAVE----D-FNSRAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~----~-F~~~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
|+||||+|.+++-..... . =..++||+....|+..++. ++++.++
T Consensus 105 g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 105 GSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 999999999987654321 1 1379999999888877654 4455544
No 298
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=81.88 E-value=3.6 Score=44.61 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=43.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCC--------------------CCCChhHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSC--------------------DFKDLNPVQV 250 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--------------------~~~~~~~~~~ 250 (1422)
|.|||++|.++....- +.=..++|++..+.+ .++.+++ .+++.... ...+.+....
T Consensus 35 GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~~--~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~ 110 (234)
T PRK06067 35 GTGKSVLSQQFVYGAL-KQGKKVYVITTENTS--KSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLE 110 (234)
T ss_pred CCChHHHHHHHHHHHH-hCCCEEEEEEcCCCH--HHHHHHH-HHCCCChhHHHhCCCceEEeccccccccCcchHHHHHH
Confidence 9999999999865421 223468899887654 3444432 22321100 0122345556
Q ss_pred HHHHHhcc-ceeEEEeccCC
Q 000559 251 KLKQEVAG-RKFLIVLDDVW 269 (1422)
Q Consensus 251 ~l~~~l~~-k~~LlVlDdv~ 269 (1422)
.+.+.+.. +.-++|+|.+-
T Consensus 111 ~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 111 LIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHHHHHHhcCCCEEEEecHH
Confidence 66666653 55689999974
No 299
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=81.74 E-value=2.8 Score=50.73 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=45.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+||||||..|+++.. |. ++=|++|.......+-..|...+........ .+++.-||+|.++.
T Consensus 336 GlGKTTLAHViAkqaG---Ys-VvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 336 GLGKTTLAHVIAKQAG---YS-VVEINASDERTAPMVKEKIENAVQNHSVLDA-------------DSRPVCLVIDEIDG 398 (877)
T ss_pred CCChhHHHHHHHHhcC---ce-EEEecccccccHHHHHHHHHHHHhhcccccc-------------CCCcceEEEecccC
Confidence 9999999999999743 53 6778888887777776666666643321110 15677889998865
Q ss_pred C
Q 000559 271 K 271 (1422)
Q Consensus 271 ~ 271 (1422)
.
T Consensus 399 a 399 (877)
T KOG1969|consen 399 A 399 (877)
T ss_pred C
Confidence 4
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=81.43 E-value=4.9 Score=41.05 Aligned_cols=111 Identities=16% Similarity=0.138 Sum_probs=55.8
Q ss_pred cccHHHHHHHHhcccccccCC---------cEEEEEEcCcccHHHHHHHHHHHhcCCCC----CCCCh---hHHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFN---------SRAWVCVSDDFDILRISKAILESITLSSC----DFKDL---NPVQVKLKQ 254 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~---~~~~~~l~~ 254 (1422)
|.|||||.+.+..+.....+. .+.|+ .+ .+.++.++.... ....+ ....-.+.+
T Consensus 31 G~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 31 GSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 999999999886321100011 12332 11 456666664321 11111 122223455
Q ss_pred Hhccc--eeEEEeccCCCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHhhCCCCceeeC
Q 000559 255 EVAGR--KFLIVLDDVWSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALTLGCPGECHNL 314 (1422)
Q Consensus 255 ~l~~k--~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~~l 314 (1422)
.+..+ .=++++|.--.. +....+.+...+.. ...|..||++|.+...... ++ .++.+
T Consensus 101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d-~i~~l 161 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--AD-WIIDF 161 (176)
T ss_pred HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CC-EEEEE
Confidence 55566 778888987443 11222333333322 1246778888888776543 22 55544
No 301
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=81.27 E-value=2.1 Score=50.52 Aligned_cols=83 Identities=14% Similarity=0.175 Sum_probs=49.7
Q ss_pred Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChh-----HH
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLN-----PV 248 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~ 248 (1422)
..++| |+|||||+.++++......-+.++++-+++.. .+.++..++...=.... .+..... ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 34555 99999999888877542235777788777654 45666666654321111 0111111 11
Q ss_pred HHHHHHHh---ccceeEEEeccC
Q 000559 249 QVKLKQEV---AGRKFLIVLDDV 268 (1422)
Q Consensus 249 ~~~l~~~l---~~k~~LlVlDdv 268 (1422)
+..+.+++ +++++|+++||+
T Consensus 224 a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccc
Confidence 22345555 378999999999
No 302
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.25 E-value=12 Score=44.64 Aligned_cols=147 Identities=18% Similarity=0.225 Sum_probs=80.6
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|.|||-||++|+|..+. -|++|-.+ +++...- ..+........++.=..-++.|.||.++.
T Consensus 555 GCGKTLlAKAVANEag~------NFisVKGP--------ELlNkYV-----GESErAVR~vFqRAR~saPCVIFFDEiDa 615 (802)
T KOG0733|consen 555 GCGKTLLAKAVANEAGA------NFISVKGP--------ELLNKYV-----GESERAVRQVFQRARASAPCVIFFDEIDA 615 (802)
T ss_pred CccHHHHHHHHhhhccC------ceEeecCH--------HHHHHHh-----hhHHHHHHHHHHHhhcCCCeEEEecchhh
Confidence 99999999999998652 24444333 1222111 12222333333333346689999999855
Q ss_pred CC-----ccch------hhhhccCCC--CCCCcEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhhhcC
Q 000559 271 KN-----YGLW------EVLKSPFMA--GAPGSKIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHAFAS 333 (1422)
Q Consensus 271 ~~-----~~~~------~~l~~~~~~--~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a~~~ 333 (1422)
-. ...| .++..-+.. ...|--||-.|-..++.+.. |--+...-+..-+.+|-.++++...-.
T Consensus 616 L~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn- 694 (802)
T KOG0733|consen 616 LVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN- 694 (802)
T ss_pred cCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc-
Confidence 21 1122 222222221 23577788888777765432 222466678888888888888887743
Q ss_pred CCccccccccchHHHHHHHHHHhCCCc
Q 000559 334 REFVASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
..+...+++ +++++|+. .+|.|.-
T Consensus 695 ~k~pl~~dV-dl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 695 TKPPLSSDV-DLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCCCCccc-CHHHHhhc--ccccCCc
Confidence 222112211 45555543 3566665
No 303
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.94 E-value=5.1 Score=45.53 Aligned_cols=80 Identities=15% Similarity=0.272 Sum_probs=53.4
Q ss_pred Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCCCC-------CCCChh-----HH
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLSSC-------DFKDLN-----PV 248 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-------~~~~~~-----~~ 248 (1422)
..+|| |+|||||.-++++.. .+|.++-.=+++ ...++++.++.+..-+...+ +...+. ..
T Consensus 164 QRiGIFAgsGVGKStLLgMiar~t---~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~ 240 (441)
T COG1157 164 QRIGIFAGSGVGKSTLLGMIARNT---EADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFT 240 (441)
T ss_pred ceeEEEecCCCcHHHHHHHHhccc---cCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHH
Confidence 55777 999999999999863 377665555554 45677777777766644322 222221 22
Q ss_pred HHHHHHHhc--cceeEEEeccC
Q 000559 249 QVKLKQEVA--GRKFLIVLDDV 268 (1422)
Q Consensus 249 ~~~l~~~l~--~k~~LlVlDdv 268 (1422)
+..+.++++ +|++|+++|-+
T Consensus 241 At~IAEyFRDqG~~VLL~mDSl 262 (441)
T COG1157 241 ATTIAEYFRDQGKRVLLIMDSL 262 (441)
T ss_pred HHHHHHHHHhCCCeEEEEeecH
Confidence 345666764 78999999998
No 304
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=80.87 E-value=2 Score=50.35 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=46.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHhc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEVA 257 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l~ 257 (1422)
|+|||+|+.++.......+-+.++++-+++.. .+.++.+++...=... ..+..... ..+..+.++++
T Consensus 148 G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfr 227 (449)
T TIGR03305 148 GVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFR 227 (449)
T ss_pred CCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998776431224678888887765 4556666655431111 01111111 11223555554
Q ss_pred ---cceeEEEeccC
Q 000559 258 ---GRKFLIVLDDV 268 (1422)
Q Consensus 258 ---~k~~LlVlDdv 268 (1422)
++++|+++||+
T Consensus 228 d~~G~~VLl~~Dsl 241 (449)
T TIGR03305 228 DDEKQDVLLLIDNI 241 (449)
T ss_pred HhcCCceEEEecCh
Confidence 68999999999
No 305
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.81 E-value=3.4 Score=47.96 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=51.3
Q ss_pred Ccccccc---hhHHHHHHHhcCCCCCC--------Ccc--cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHH
Q 000559 162 PAVYGRD---GDKAKVLDMVLSHDTNN--------DDV--NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRI 227 (1422)
Q Consensus 162 ~~~vGr~---~~~~~i~~~l~~~~~~~--------~~v--~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~ 227 (1422)
.++-|.| .|+++|+++|.++..-. +++ |- |.|||-||++|+-...|..| ...+..|+-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF-----~~sGSEFdE--- 375 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFF-----YASGSEFDE--- 375 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeE-----eccccchhh---
Confidence 4566776 46778888887764311 222 22 99999999999998775432 222333331
Q ss_pred HHHHHHHhcCCCCCCCChhHHHHHHHHHh----ccceeEEEeccCCC
Q 000559 228 SKAILESITLSSCDFKDLNPVQVKLKQEV----AGRKFLIVLDDVWS 270 (1422)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~ 270 (1422)
++ +...+.++|+.+ +.-++.|.+|.++.
T Consensus 376 ---m~------------VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 ---MF------------VGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---hh------------hcccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11 112233444444 34589999999865
No 306
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=80.58 E-value=4.4 Score=44.40 Aligned_cols=76 Identities=21% Similarity=0.148 Sum_probs=45.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHH-hcCC-CCCCCChhHH---HHHHHHHhccceeEEEe
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILES-ITLS-SCDFKDLNPV---QVKLKQEVAGRKFLIVL 265 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~---~~~l~~~l~~k~~LlVl 265 (1422)
|.||||+|.+++-... ..-..++||+....+++.++.. ++.. +..- .....+.++. +..+.+....+--|+|+
T Consensus 70 gsGKT~lal~~~~~aq-~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVV 147 (279)
T COG0468 70 SSGKTTLALQLVANAQ-KPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVV 147 (279)
T ss_pred CcchhhHHHHHHHHhh-cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEE
Confidence 9999999988876533 2244789999999998876543 3333 2211 1122333332 23333333334568888
Q ss_pred ccC
Q 000559 266 DDV 268 (1422)
Q Consensus 266 Ddv 268 (1422)
|-|
T Consensus 148 DSv 150 (279)
T COG0468 148 DSV 150 (279)
T ss_pred ecC
Confidence 888
No 307
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.56 E-value=8.5 Score=39.29 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=31.0
Q ss_pred HHHHhccceeEEEeccCCCC-CccchhhhhccCCCCCCCcEEEEEcCChHHHHh
Q 000559 252 LKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 252 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~ 304 (1422)
+.+.+..++-+++||+-... +....+.+...+.....+..||++|.+......
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 55566677889999987543 112223333333222235678888888776643
No 308
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.49 E-value=3.5 Score=47.36 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=43.8
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcC-cccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSD-DFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|+||||++..++.....+. ...+..|+... ...-.+-++...+.++.+.....+..++...+. .+.++ -++++|..
T Consensus 147 GvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~~~-DlVLIDTa 224 (374)
T PRK14722 147 GVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELRNK-HMVLIDTI 224 (374)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-HhcCC-CEEEEcCC
Confidence 9999999999987653221 33566666433 223445555566666654433333333333333 34444 55668888
Q ss_pred CC
Q 000559 269 WS 270 (1422)
Q Consensus 269 ~~ 270 (1422)
-.
T Consensus 225 G~ 226 (374)
T PRK14722 225 GM 226 (374)
T ss_pred CC
Confidence 43
No 309
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=80.43 E-value=5.6 Score=40.68 Aligned_cols=94 Identities=12% Similarity=0.006 Sum_probs=47.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEE------EcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVC------VSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlV 264 (1422)
|.|||||++.+..-... ..+.+++. +.+... ...-+...-.+.+.+..++-+++
T Consensus 35 GsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 35 GTGKTTAVKILAGQLIP--NGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CChHHHHHHHHHcCCCC--CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999875321 22333321 111111 11111222345566667788999
Q ss_pred eccCCCCC-ccchhhhhccCCC--CCCCcEEEEEcCChHHHHh
Q 000559 265 LDDVWSKN-YGLWEVLKSPFMA--GAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 265 lDdv~~~~-~~~~~~l~~~~~~--~~~gs~ilvTtR~~~v~~~ 304 (1422)
+|.--..- ....+.+...+.. ...+..||++|.+......
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 99874431 1222222222221 1123567788877665554
No 310
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.32 E-value=3.8 Score=46.41 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=51.3
Q ss_pred HHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCC-----CC
Q 000559 172 AKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSC-----DF 242 (1422)
Q Consensus 172 ~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~ 242 (1422)
.++-..|...-.....|-| |||||||..+++.+...+. .+.+|+-.+...-.+ --++.++.... ..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aE 154 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAE 154 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehh
Confidence 3343334333233344445 9999999999998765333 688887665543322 23455553322 12
Q ss_pred CChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 243 KDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 243 ~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
.+.+.....+. +.+.-++|+|-+..
T Consensus 155 t~~e~I~~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 155 TNLEDIIAELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred cCHHHHHHHHH---hcCCCEEEEeccce
Confidence 33444333333 36788999999843
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=80.01 E-value=7.8 Score=39.30 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=51.6
Q ss_pred cccHHHHHHHHhcccccc-c---CCc---EEEEEEcCcccHHHHHHHHHHHhcC-CCCCCCChhHHHHHHHHHhccceeE
Q 000559 191 RVGKTTLARLVYNDLAVE-D---FNS---RAWVCVSDDFDILRISKAILESITL-SSCDFKDLNPVQVKLKQEVAGRKFL 262 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~-~---F~~---~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l~~~l~~k~~L 262 (1422)
|.|||||++.++...... + ++. +.+ +.+.+.... ..+.+.+.. ....-..-+...-.+.+.+..++=+
T Consensus 37 GsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 37 GTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCcccc--ccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999998764311 1 221 222 233322110 122222211 1111122222333456666677788
Q ss_pred EEeccCCCC-CccchhhhhccCCCCCCCcEEEEEcCChHHHH
Q 000559 263 IVLDDVWSK-NYGLWEVLKSPFMAGAPGSKIIVTTRDENVAL 303 (1422)
Q Consensus 263 lVlDdv~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 303 (1422)
+++|+--.. +....+.+...+... +..||++|.+.....
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 899986443 112223333333222 356888888776543
No 312
>PRK06696 uridine kinase; Validated
Probab=79.89 E-value=1.3 Score=47.71 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=28.6
Q ss_pred cchhHHHHHHHhcCCCC-CCCcccc----cccHHHHHHHHhccc
Q 000559 167 RDGDKAKVLDMVLSHDT-NNDDVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 167 r~~~~~~i~~~l~~~~~-~~~~v~i----GvGKTtLa~~v~~~~ 205 (1422)
|.+-+++|.+.+..... ...+|+| |.||||+|+.++...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677778888765332 3356777 999999999999864
No 313
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=79.75 E-value=4.5 Score=47.24 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=44.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~~l~~~l- 256 (1422)
|.|||||++.++.... .+.++.+-+++.. .+.++.++++..-.... .+..... ..+..+.+++
T Consensus 172 G~GKSTLL~~I~~~~~---~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfr 248 (444)
T PRK08972 172 GVGKSVLLGMMTRGTT---ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFR 248 (444)
T ss_pred CCChhHHHHHhccCCC---CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987532 3556667777654 45556666544322111 1111111 1112244444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 249 d~G~~VLl~~Dsl 261 (444)
T PRK08972 249 DQGLNVLLLMDSL 261 (444)
T ss_pred HcCCCEEEEEcCh
Confidence 589999999999
No 314
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=79.71 E-value=3.1 Score=51.54 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=68.4
Q ss_pred CCCcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 160 TEPAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 160 ~~~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
....++|....+.++++.+..-......|-| |.|||++|+.+++.-.. .-...+.|++..-.+ ..+...+ +
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-~~~pfv~i~c~~~~~--~~~~~~l--f 268 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-AKRPFVKVNCAALSE--TLLESEL--F 268 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-CCCCeEEeecCCCCH--HHHHHHH--c
Confidence 3567999999999998887654333333434 99999999999876331 122334555544322 2222111 1
Q ss_pred cCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEEcCCh
Q 000559 236 TLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVTTRDE 299 (1422)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~~ 299 (1422)
+........... ...-..-....-.|+||+|..-.......+...+..+. ...|||.||...
T Consensus 269 g~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 269 GHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred CCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 111100000000 00000001234568999997655555555555543321 125888887543
No 315
>PRK07667 uridine kinase; Provisional
Probab=79.67 E-value=1.3 Score=46.19 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccc
Q 000559 171 KAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 171 ~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~ 206 (1422)
.+.|.+.+........+|+| |.||||+|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677777665554456777 9999999999987643
No 316
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=79.67 E-value=4 Score=48.30 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=45.6
Q ss_pred cccHHHHHHHHhccccccc-CC--cEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChh-----HHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVED-FN--SRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLN-----PVQVKLKQ 254 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~~l~~ 254 (1422)
|+|||||+.+++++....+ +. .++++-+++.. .+.++.+++...=.... .+..... -....+.+
T Consensus 151 G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 230 (458)
T TIGR01041 151 GLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAE 230 (458)
T ss_pred CCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998754321 21 56677776653 45666666553321111 0111111 11223555
Q ss_pred Hhc---cceeEEEeccC
Q 000559 255 EVA---GRKFLIVLDDV 268 (1422)
Q Consensus 255 ~l~---~k~~LlVlDdv 268 (1422)
+++ ++++|+++||+
T Consensus 231 yfr~d~G~~VLli~Dsl 247 (458)
T TIGR01041 231 YLAFEKDMHVLVILTDM 247 (458)
T ss_pred HHHHccCCcEEEEEcCh
Confidence 554 78999999999
No 317
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=79.10 E-value=26 Score=36.59 Aligned_cols=117 Identities=16% Similarity=0.136 Sum_probs=63.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHh----ccceeEEEec
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEV----AGRKFLIVLD 266 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlD 266 (1422)
|.|||-||++||++.. +-|+.||... +.+..-++ ....+++.+ ..-+.+|.+|
T Consensus 191 gtGktLlaraVahht~------c~firvsgse--------lvqk~ige---------gsrmvrelfvmarehapsiifmd 247 (404)
T KOG0728|consen 191 GTGKTLLARAVAHHTD------CTFIRVSGSE--------LVQKYIGE---------GSRMVRELFVMAREHAPSIIFMD 247 (404)
T ss_pred CCchhHHHHHHHhhcc------eEEEEechHH--------HHHHHhhh---------hHHHHHHHHHHHHhcCCceEeee
Confidence 9999999999999743 4556666541 12222111 112222222 2346788888
Q ss_pred cCCCCCc--------------cchhhhhccCCC--CCCCcEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHH
Q 000559 267 DVWSKNY--------------GLWEVLKSPFMA--GAPGSKIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVF 326 (1422)
Q Consensus 267 dv~~~~~--------------~~~~~l~~~~~~--~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf 326 (1422)
.+++... -..-++...+.. ..+.-|||..|..-++.+.. |-.+..++..+-+++.-.+++
T Consensus 248 eidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~il 327 (404)
T KOG0728|consen 248 EIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDIL 327 (404)
T ss_pred cccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHH
Confidence 8755210 011122223322 23456888887766665432 222456777777766666666
Q ss_pred HHhh
Q 000559 327 KKHA 330 (1422)
Q Consensus 327 ~~~a 330 (1422)
+-+.
T Consensus 328 kihs 331 (404)
T KOG0728|consen 328 KIHS 331 (404)
T ss_pred HHhh
Confidence 6554
No 318
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=79.04 E-value=8.6 Score=43.29 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=35.6
Q ss_pred HHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHH
Q 000559 173 KVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAIL 232 (1422)
Q Consensus 173 ~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~ 232 (1422)
++++.+..-.. .+.++| |+|||+|++++++... -+.++++-+++.. .+.+++.++-
T Consensus 146 rvID~l~Pi~k-Gqr~~I~G~~G~GKT~L~~~Iak~~~---~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVVK-GGTAAIPGPFGCGKTVIQQSLSKYSN---SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhccccccC-CCEEEEECCCCCChHHHHHHHHhCCC---CCEEEEEEeCCChHHHHHHHHHHH
Confidence 34454443222 234445 9999999999999743 3568888887754 4556666543
No 319
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.03 E-value=1.3 Score=28.43 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCcccEEEecccccCccCccc
Q 000559 567 FKKLRVLSLRNYYITEVPNSI 587 (1422)
Q Consensus 567 ~~~Lr~L~L~~~~i~~lp~~i 587 (1422)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
No 320
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.03 E-value=1.3 Score=28.43 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.0
Q ss_pred CCcccEEEecccccCccCccc
Q 000559 567 FKKLRVLSLRNYYITEVPNSI 587 (1422)
Q Consensus 567 ~~~Lr~L~L~~~~i~~lp~~i 587 (1422)
+++|++|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
No 321
>PRK12678 transcription termination factor Rho; Provisional
Probab=78.90 E-value=1.1 Score=53.08 Aligned_cols=78 Identities=15% Similarity=0.338 Sum_probs=41.0
Q ss_pred cccHHHHHHHHhcccccccCCcE-EEEEEcCccc-HHHHHHHHHHHhcCCCCCCCC-----hhHHHHHHHHHh--cccee
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSR-AWVCVSDDFD-ILRISKAILESITLSSCDFKD-----LNPVQVKLKQEV--AGRKF 261 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~l~~~l--~~k~~ 261 (1422)
|+|||||++.|++......-++. +.+-|.+.+. +.++.+.+-..+-....+... ...+...+.+++ .++.+
T Consensus 426 ~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre~G~dV 505 (672)
T PRK12678 426 KAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGKDV 505 (672)
T ss_pred CCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 99999999999986532222222 3455665543 434433331111111111111 112222344444 58999
Q ss_pred EEEeccC
Q 000559 262 LIVLDDV 268 (1422)
Q Consensus 262 LlVlDdv 268 (1422)
||++|++
T Consensus 506 lillDSl 512 (672)
T PRK12678 506 VVLLDSI 512 (672)
T ss_pred EEEEeCc
Confidence 9999999
No 322
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.70 E-value=5.2 Score=47.71 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=55.2
Q ss_pred cccHHH-HHHHHhcccccccCCcEEEEEEcCccc--HHHHHHHHHHHhcCCCCC----------CCChhHH------HHH
Q 000559 191 RVGKTT-LARLVYNDLAVEDFNSRAWVCVSDDFD--ILRISKAILESITLSSCD----------FKDLNPV------QVK 251 (1422)
Q Consensus 191 GvGKTt-La~~v~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~----------~~~~~~~------~~~ 251 (1422)
|.|||| ||+.+|.+--. -.+ -|-+.|+.. ...+.+.+++.++..-.+ ..+.... .-.
T Consensus 381 GSGKTTQl~QyL~edGY~--~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiL 456 (1042)
T KOG0924|consen 381 GSGKTTQLAQYLYEDGYA--DNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGIL 456 (1042)
T ss_pred CCCchhhhHHHHHhcccc--cCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEeccchH
Confidence 999997 88888876211 123 344445443 446677788887543211 1111100 012
Q ss_pred HHHHhc----cceeEEEeccCCCCC--ccc-hhhhhccCCCCCCCcEEEEEcCChH
Q 000559 252 LKQEVA----GRKFLIVLDDVWSKN--YGL-WEVLKSPFMAGAPGSKIIVTTRDEN 300 (1422)
Q Consensus 252 l~~~l~----~k~~LlVlDdv~~~~--~~~-~~~l~~~~~~~~~gs~ilvTtR~~~ 300 (1422)
+++.|+ .|=-.||+|.+.+.. .+. +.-++..+ .....-|+|||+-.-+
T Consensus 457 LrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 457 LRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSATMD 511 (1042)
T ss_pred HHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeecccc
Confidence 444444 455688999986542 111 12222222 2334679999986543
No 323
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=78.57 E-value=8.3 Score=43.00 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=28.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHh
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 235 (1422)
|+||||+|.+++.......=..++|+++... ..++...+...+
T Consensus 40 G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 40 GVGKTTFLREYALDLITQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 9999999999877643221235889987664 344555554443
No 324
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=78.10 E-value=90 Score=36.43 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=71.5
Q ss_pred eeEEEeccCCCCCc---------cchhhhhccCCCCCCCcEEEEEcCChHHHHhhC----C-CCceeeCCCCChhhHHHH
Q 000559 260 KFLIVLDDVWSKNY---------GLWEVLKSPFMAGAPGSKIIVTTRDENVALTLG----C-PGECHNLELLSDNDCWSV 325 (1422)
Q Consensus 260 ~~LlVlDdv~~~~~---------~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~----~-~~~~~~l~~l~~~~~~~l 325 (1422)
|=+||+|+.-.... .+|.... .. .+=-+||++|-+......+. . .-..+.+...+.+.|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L---v~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL---VQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH---Hh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 55899999854321 2333321 12 23458888887765554331 1 125678899999999999
Q ss_pred HHHhhhcCCCcc----------ccccc---cchHHHHHHHHHHhCCCchHHHHHHHHHhcCCCh-HHHHHHH
Q 000559 326 FKKHAFASREFV----------ASSRL---CNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRD-AEWQDIL 383 (1422)
Q Consensus 326 f~~~a~~~~~~~----------~~~~~---~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~-~~w~~~l 383 (1422)
...+.-...... ..+.. .....-....+..+||=-.-+..+++.++...++ +.-.++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI 296 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEII 296 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 988874321100 00000 0233344678889999999999999999876553 3333443
No 325
>PRK10646 ADP-binding protein; Provisional
Probab=77.98 E-value=1.8 Score=42.49 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=23.6
Q ss_pred hhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccc
Q 000559 169 GDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 169 ~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~ 206 (1422)
++..++-+.|...-....+|.. |.||||+++.+++-..
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4444555555433233344544 9999999999987644
No 326
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=77.59 E-value=3.7 Score=48.21 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=45.6
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChhH-----HHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLNP-----VQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~l~~~l- 256 (1422)
|+|||||+.+++.......=+.++++-+++.. .+.++.+++...=.... .+...... ....+.+++
T Consensus 153 G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr 232 (461)
T TIGR01039 153 GVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFR 232 (461)
T ss_pred CCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998765431112367777777653 45666666654211111 11111111 122355566
Q ss_pred --ccceeEEEeccC
Q 000559 257 --AGRKFLIVLDDV 268 (1422)
Q Consensus 257 --~~k~~LlVlDdv 268 (1422)
+++++|+|+||+
T Consensus 233 d~~G~~VLll~Dsl 246 (461)
T TIGR01039 233 DEQGQDVLLFIDNI 246 (461)
T ss_pred HhcCCeeEEEecch
Confidence 468999999999
No 327
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=77.53 E-value=6.4 Score=46.27 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=43.2
Q ss_pred Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC-----CC-CCCChh-----HHHH
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS-----SC-DFKDLN-----PVQV 250 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~-~~~~~~-----~~~~ 250 (1422)
..++| |.|||||++.++.... ...+++|..-.+..++.++....+...... .. +..... ....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~--pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA--FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 34555 9999999998887532 133445543334445555544444433111 01 111111 1112
Q ss_pred HHHHHh--ccceeEEEeccC
Q 000559 251 KLKQEV--AGRKFLIVLDDV 268 (1422)
Q Consensus 251 ~l~~~l--~~k~~LlVlDdv 268 (1422)
.+.+++ +++.+|+++||+
T Consensus 244 ~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHcCCCEEEeccch
Confidence 244444 488999999999
No 328
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=77.52 E-value=7.1 Score=44.64 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=42.6
Q ss_pred cccHHH-HHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTT-LARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTt-La~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|||||| ||+..+.-....+=..+..|+...-. ...+=++.-++-++.+-....+..+....+.. +++++ +|.+|=+
T Consensus 213 GVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l~~~d-~ILVDTa 290 (407)
T COG1419 213 GVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-LRDCD-VILVDTA 290 (407)
T ss_pred CCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-hhcCC-EEEEeCC
Confidence 999985 77766654322334567888775432 33444556666666665555565555544443 23333 3444544
No 329
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=77.51 E-value=5.8 Score=46.56 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=43.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~~l~~~l- 256 (1422)
|+|||||++++++... .+.++.+-+++.. .+.++..+.+..-+... .+..... .....+.+++
T Consensus 168 G~GKTtLL~~I~~~~~---~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfr 244 (442)
T PRK08927 168 GVGKSVLLSMLARNAD---ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFR 244 (442)
T ss_pred CCCHHHHHHHHHhccC---CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997643 3455566676654 44455555544322110 1111111 1112244444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 245 d~G~~Vll~~Dsl 257 (442)
T PRK08927 245 DQGKDVLCLMDSV 257 (442)
T ss_pred HCCCcEEEEEeCc
Confidence 489999999999
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.47 E-value=6.6 Score=46.92 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=37.8
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDF-DILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|+||||++..++.....+. ...+..|+..... .-.+-++...+.++.......+..++...+++ +.+ .=+|++|..
T Consensus 360 GvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~~-~DLVLIDTa 437 (559)
T PRK12727 360 GAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LRD-YKLVLIDTA 437 (559)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hcc-CCEEEecCC
Confidence 9999999988876543222 3345566543211 11222233333333222222333344433433 333 457888887
Q ss_pred C
Q 000559 269 W 269 (1422)
Q Consensus 269 ~ 269 (1422)
-
T Consensus 438 G 438 (559)
T PRK12727 438 G 438 (559)
T ss_pred C
Confidence 3
No 331
>PHA00729 NTP-binding motif containing protein
Probab=77.39 E-value=1.9 Score=45.40 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=16.6
Q ss_pred ceeeCCCCChhhHHHHHHHhhh
Q 000559 310 ECHNLELLSDNDCWSVFKKHAF 331 (1422)
Q Consensus 310 ~~~~l~~l~~~~~~~lf~~~a~ 331 (1422)
..+.+.++++++..+.+..+..
T Consensus 120 ~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 120 SAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred cEEEEecCCHHHHHHHHHhCCC
Confidence 5677778888888888877653
No 332
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=77.29 E-value=6.9 Score=46.47 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=44.5
Q ss_pred cccHHHHH-HHHhcccccccCCc-EEEEEEcCcc-cHHHHHHHHHHHhcCCCC-----CCCC--hhH-----HHHHHHHH
Q 000559 191 RVGKTTLA-RLVYNDLAVEDFNS-RAWVCVSDDF-DILRISKAILESITLSSC-----DFKD--LNP-----VQVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa-~~v~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~~-----~~~~l~~~ 255 (1422)
|+|||||| ..+.++. .-+. ++++-+++.. .+.++.+.+...=..... ..++ ... ....+.++
T Consensus 172 g~GKT~Lal~~I~~q~---~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAEy 248 (497)
T TIGR03324 172 QTGKTAIAIDTILNQK---GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGEH 248 (497)
T ss_pred CCCHHHHHHHHHHHhc---CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999997 5777763 2454 6888888764 455666655543211110 1111 111 11224445
Q ss_pred h--ccceeEEEeccCC
Q 000559 256 V--AGRKFLIVLDDVW 269 (1422)
Q Consensus 256 l--~~k~~LlVlDdv~ 269 (1422)
+ +++.+|+|+||+-
T Consensus 249 frd~G~~VLlv~DdlT 264 (497)
T TIGR03324 249 FMEQGRDVLIVYDDLT 264 (497)
T ss_pred HHhCCCCEEEEEcChh
Confidence 5 5899999999993
No 333
>PTZ00035 Rad51 protein; Provisional
Probab=77.23 E-value=10 Score=43.32 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=30.0
Q ss_pred cccHHHHHHHHhccccc----cc-CCcEEEEEEcCcccHHHHHHHHHHHhc
Q 000559 191 RVGKTTLARLVYNDLAV----ED-FNSRAWVCVSDDFDILRISKAILESIT 236 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~----~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~ 236 (1422)
|.||||++.+++-.... .. =..++||+....++..+ +.++++.++
T Consensus 128 GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 128 RTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 99999999988743321 11 23567999888777766 344555554
No 334
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=77.14 E-value=26 Score=38.29 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=58.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|+|||+-++.+++..- ...-+..+..+....++..+........ .....+....+...+++..-+++.|....
T Consensus 104 g~gKt~a~~~y~~s~p-----~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~~~~iivDEA~~ 176 (297)
T COG2842 104 GLGKTQAAKNYAPSNP-----NALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDTVRLIIVDEADR 176 (297)
T ss_pred cchhHHHHHhhcccCc-----cceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccCcceeeeehhhc
Confidence 9999999999998743 2333556666666666666666554332 22334445566666788888999999876
Q ss_pred CCccchhhhhccCCC
Q 000559 271 KNYGLWEVLKSPFMA 285 (1422)
Q Consensus 271 ~~~~~~~~l~~~~~~ 285 (1422)
-....++.+......
T Consensus 177 L~~~ale~lr~i~d~ 191 (297)
T COG2842 177 LPYRALEELRRIHDK 191 (297)
T ss_pred cChHHHHHHHHHHHh
Confidence 666677777665443
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.12 E-value=7.9 Score=45.80 Aligned_cols=76 Identities=17% Similarity=0.104 Sum_probs=39.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCCCCC---CCChhHHHHHHHHHhccceeEEEec
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLSSCD---FKDLNPVQVKLKQEVAGRKFLIVLD 266 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlD 266 (1422)
|+||||+|..++......++ .++-|++.. .+...+-++.++++++.+... ..+.........+.+++. -++|+|
T Consensus 105 GsGKTTtaakLA~~L~~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~-DvVIID 182 (437)
T PRK00771 105 GSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA-DVIIVD 182 (437)
T ss_pred CCcHHHHHHHHHHHHHHcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcC-CEEEEE
Confidence 99999999999876553224 344555432 122344455666666543221 122222222222333333 567788
Q ss_pred cC
Q 000559 267 DV 268 (1422)
Q Consensus 267 dv 268 (1422)
..
T Consensus 183 TA 184 (437)
T PRK00771 183 TA 184 (437)
T ss_pred CC
Confidence 77
No 336
>PRK13948 shikimate kinase; Provisional
Probab=77.12 E-value=14 Score=38.05 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.5
Q ss_pred ccc-cccHHHHHHHHhcccc
Q 000559 188 VNF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~ 206 (1422)
+|. |.||||+++.+++...
T Consensus 16 iG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 16 AGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred ECCCCCCHHHHHHHHHHHcC
Confidence 344 9999999999998754
No 337
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=77.04 E-value=10 Score=41.33 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=12.8
Q ss_pred cccHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDL 205 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~ 205 (1422)
|+|||+||.+++-..
T Consensus 11 G~GKS~lal~la~~v 25 (239)
T cd01125 11 GTGKSSLLLVLALAM 25 (239)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987643
No 338
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.79 E-value=10 Score=45.67 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=19.0
Q ss_pred CceeeCCCCChhhHHHHHHHhhhc
Q 000559 309 GECHNLELLSDNDCWSVFKKHAFA 332 (1422)
Q Consensus 309 ~~~~~l~~l~~~~~~~lf~~~a~~ 332 (1422)
+..+.+..-+.+.-.++|+.++-.
T Consensus 594 D~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 594 DRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ceeEeecCccHHHHHHHHHHHHhc
Confidence 467778887888889999998843
No 339
>PRK06936 type III secretion system ATPase; Provisional
Probab=76.66 E-value=6.9 Score=45.88 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=44.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChhH-----HHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLNP-----VQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~l~~~l- 256 (1422)
|+|||||.+.+++... -+.++++-+++.. .+.++.+..+..-+... .+...... ....+.+++
T Consensus 172 G~GKStLl~~Ia~~~~---~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr 248 (439)
T PRK06936 172 GGGKSTLLASLIRSAE---VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFR 248 (439)
T ss_pred CCChHHHHHHHhcCCC---CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998743 3567788787754 45555544333211110 11111111 112244444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
++|++|+++||+
T Consensus 249 d~G~~Vll~~Dsl 261 (439)
T PRK06936 249 DQGKRVLLLMDSV 261 (439)
T ss_pred HcCCCEEEeccch
Confidence 589999999999
No 340
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=76.62 E-value=1.2 Score=45.54 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=15.0
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|+||||||+.++++..
T Consensus 14 G~GKSTLa~~La~~l~ 29 (216)
T COG1428 14 GAGKSTLAQALAEHLG 29 (216)
T ss_pred ccCHHHHHHHHHHHhC
Confidence 9999999999999866
No 341
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=76.50 E-value=1.8 Score=51.62 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=31.8
Q ss_pred cccccchhHHHHHHHhcC----CCCCCCcccc----cccHHHHHHHHhccc
Q 000559 163 AVYGRDGDKAKVLDMVLS----HDTNNDDVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~----~~~~~~~v~i----GvGKTtLa~~v~~~~ 205 (1422)
.++|.++.+++|++.|.. -.....++.. |+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 589999999999999932 2222233322 999999999998753
No 342
>PRK08149 ATP synthase SpaL; Validated
Probab=76.17 E-value=5.8 Score=46.43 Aligned_cols=75 Identities=13% Similarity=0.277 Sum_probs=43.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCCC-------CCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLSS-------CDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~~l~~~l- 256 (1422)
|.|||||++.++.... -+.++...+.. ..++.++..+......... .+..... .....+.+++
T Consensus 161 G~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~fr 237 (428)
T PRK08149 161 GCGKTSLMNMLIEHSE---ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFR 237 (428)
T ss_pred CCChhHHHHHHhcCCC---CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHHH
Confidence 9999999999988643 23334444544 3356666666665432211 1111111 1122334444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
++|++|+++||+
T Consensus 238 ~~G~~Vll~~Dsl 250 (428)
T PRK08149 238 DQGKRVVLFIDSM 250 (428)
T ss_pred HcCCCEEEEccch
Confidence 489999999999
No 343
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=76.05 E-value=3.1 Score=43.58 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=22.4
Q ss_pred eeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEc
Q 000559 260 KFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTT 296 (1422)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTt 296 (1422)
+-+||+|++.-.....+..+...... .|+|+|+.=
T Consensus 94 ~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 94 KDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp TSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred ccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 45999999977655667777666654 467887754
No 344
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=75.92 E-value=5.2 Score=44.66 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=39.0
Q ss_pred cccHHHHHHHHhcccccc-cCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVE-DFNSRAWVCVSDDF-DILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~-~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|+||||++..++.....+ +-..+..|+..... ...+-+....+.++.+.....+..++...+.+ +.+ .=+|++|..
T Consensus 204 GvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~~-~d~vliDt~ 281 (282)
T TIGR03499 204 GVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LRD-KDLILIDTA 281 (282)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-ccC-CCEEEEeCC
Confidence 999999998888765433 22346666654321 12233333344444333333344444444433 333 347777753
No 345
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.86 E-value=1.2 Score=42.41 Aligned_cols=15 Identities=40% Similarity=0.496 Sum_probs=13.8
Q ss_pred cccHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDL 205 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~ 205 (1422)
|+||||+|+.+++..
T Consensus 9 gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 9 GSGKSTLAKELAERL 23 (121)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999999874
No 346
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=75.75 E-value=8 Score=42.57 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=62.3
Q ss_pred hHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCC-C----
Q 000559 170 DKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSS-C---- 240 (1422)
Q Consensus 170 ~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~---- 240 (1422)
..+.++..+..... ...+++ |.||||+.+.++.... ...+.+|+.- +.....+-..+++.....-. .
T Consensus 97 ~~~~~l~~l~~~~~-~~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 97 AADKLLPYLVRNNR-VLNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred cHHHHHHHHHhCCC-eeEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECC-EEeecchhHHHHHHHhcccccccccc
Confidence 45556666654321 123333 9999999999997643 1233344320 11111111123332221110 0
Q ss_pred --CC-CChhHHHHHHHHHhc-cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHh
Q 000559 241 --DF-KDLNPVQVKLKQEVA-GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 241 --~~-~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~ 304 (1422)
+. +.... ..-+...++ ..+=++|+|.+-.. +.+..+...+. .|..||+||-...+...
T Consensus 173 r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 173 RTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred cccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 01 11111 222333333 57889999998543 44555554442 47789999987666443
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=75.69 E-value=5.6 Score=40.20 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=53.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC--cccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD--DFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|.|||||.+.++.... ...+.+++.-.. ..+..+..+ ..++... +-..-+...-.+.+.+-.++-++++|+-
T Consensus 36 GsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 36 GAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred CCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999999999987532 134445542111 011111111 1111100 1111122233455666677889999987
Q ss_pred CCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHh
Q 000559 269 WSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 269 ~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~ 304 (1422)
-.. +....+.+...+.. ...|..||++|.+......
T Consensus 110 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 543 22223333333322 1236678888888765443
No 348
>PRK05439 pantothenate kinase; Provisional
Probab=75.36 E-value=7.5 Score=43.53 Aligned_cols=74 Identities=16% Similarity=0.042 Sum_probs=37.1
Q ss_pred Ccccc----cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHhc-CCCCCCCChhHHHHHHHHHhccc
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESIT-LSSCDFKDLNPVQVKLKQEVAGR 259 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~~k 259 (1422)
-+||| |+||||+|+.+........ -..+.-|++..-....+.+.+- ..+. ....+.-|.+.+...+.+..+++
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~Lk~G~ 165 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDVKSGK 165 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHHHcCC
Confidence 45777 9999999998877432111 1234455544432222222110 1111 11223446666666666665555
Q ss_pred e
Q 000559 260 K 260 (1422)
Q Consensus 260 ~ 260 (1422)
.
T Consensus 166 ~ 166 (311)
T PRK05439 166 P 166 (311)
T ss_pred C
Confidence 4
No 349
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=75.32 E-value=7.3 Score=41.60 Aligned_cols=31 Identities=23% Similarity=0.105 Sum_probs=19.6
Q ss_pred cccHHHHHHHHhcccccccC-CcEEEEEEcCc
Q 000559 191 RVGKTTLARLVYNDLAVEDF-NSRAWVCVSDD 221 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F-~~~~wv~~s~~ 221 (1422)
|.||||+|+.+......... ..+..|+...-
T Consensus 9 GSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 9 AVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 99999999999876531111 23455555443
No 350
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=75.15 E-value=13 Score=37.48 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHhccceeEEEecc----CCCCCccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCC
Q 000559 250 VKLKQEVAGRKFLIVLDD----VWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGC 307 (1422)
Q Consensus 250 ~~l~~~l~~k~~LlVlDd----v~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~ 307 (1422)
-.|.+.+-+++-+|+-|. ++.+ ..|+-+.-.-.-+..|+.||++|-+..+...+..
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~--~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPD--LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChH--HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 356677778888999885 3322 3455433222234569999999999999887754
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=75.07 E-value=11 Score=40.80 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=22.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF 222 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~ 222 (1422)
|.|||++|.++....- +.-..++||+..+.+
T Consensus 31 GsGKT~la~~~l~~~~-~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 31 GTGKSIFSQQFLWNGL-QMGEPGIYVALEEHP 61 (237)
T ss_pred CCCHHHHHHHHHHHHH-HcCCcEEEEEeeCCH
Confidence 9999999988765432 224568999887643
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=75.05 E-value=0.97 Score=49.92 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCCCCCcccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHH-hcCCCCCCCChhHH
Q 000559 171 KAKVLDMVLSHDTNNDDVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILES-ITLSSCDFKDLNPV 248 (1422)
Q Consensus 171 ~~~i~~~l~~~~~~~~~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~ 248 (1422)
...+++.+.......-.+|- |.|||++++..........|- +.-++.+.......+++ +++. +.... ..
T Consensus 22 ~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~-~~~~~~s~~Tts~~~q~-~ie~~l~k~~---~~---- 92 (272)
T PF12775_consen 22 YSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYL-VITINFSAQTTSNQLQK-IIESKLEKRR---GR---- 92 (272)
T ss_dssp HHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEE-EEEEES-TTHHHHHHHH-CCCTTECECT---TE----
T ss_pred HHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccc-eeEeeccCCCCHHHHHH-HHhhcEEcCC---CC----
Confidence 34566666654332223444 999999999887653322222 33444444433333322 2211 11000 00
Q ss_pred HHHHHHHhccceeEEEeccCCCCCccch
Q 000559 249 QVKLKQEVAGRKFLIVLDDVWSKNYGLW 276 (1422)
Q Consensus 249 ~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 276 (1422)
...--.+|+.++.+||+--...+.|
T Consensus 93 ---~~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 93 ---VYGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp ---EEEEESSSEEEEEEETTT-S---TT
T ss_pred ---CCCCCCCcEEEEEecccCCCCCCCC
Confidence 0000136888999999954443333
No 353
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.64 E-value=13 Score=43.20 Aligned_cols=79 Identities=10% Similarity=0.083 Sum_probs=44.0
Q ss_pred cccHHHHHHHHhcccccc---cCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEec
Q 000559 191 RVGKTTLARLVYNDLAVE---DFNSRAWVCVSDDF-DILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLD 266 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~---~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 266 (1422)
|+||||.+..++...... .-..+..|++.... ...+-++..++.++.+.......++....+.+. .+.-++++|
T Consensus 184 GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLID 261 (388)
T PRK12723 184 GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVD 261 (388)
T ss_pred CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEc
Confidence 999999998888665422 12245556654321 222335555666655433334444444444433 345688889
Q ss_pred cCCCC
Q 000559 267 DVWSK 271 (1422)
Q Consensus 267 dv~~~ 271 (1422)
-+-..
T Consensus 262 TaGr~ 266 (388)
T PRK12723 262 TIGKS 266 (388)
T ss_pred CCCCC
Confidence 88443
No 354
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=74.41 E-value=6.1 Score=40.77 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=37.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc--cccHHHHHHHHhcccccccC-CcEEEEEEcCc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF--RVGKTTLARLVYNDLAVEDF-NSRAWVCVSDD 221 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i--GvGKTtLa~~v~~~~~~~~F-~~~~wv~~s~~ 221 (1422)
.++||-++.++++.-.-.+++...-+++- |+||||=+..+++..--..+ +.+.=.++|..
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 46899999999887776655443333433 99999988888776432222 33444444443
No 355
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=74.33 E-value=6.1 Score=41.32 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=21.3
Q ss_pred cccHHHHHHHHhccccccc-C--------CcEEEEEEcCcc
Q 000559 191 RVGKTTLARLVYNDLAVED-F--------NSRAWVCVSDDF 222 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F--------~~~~wv~~s~~~ 222 (1422)
|+||||++.+++....... | ..++|++.....
T Consensus 42 g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 42 GSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 9999999988887654322 3 268888877664
No 356
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=74.30 E-value=14 Score=45.18 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCcccccchhHHHHHHHhcCCCC----CCCc---ccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDT----NNDD---VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAIL 232 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~----~~~~---v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 232 (1422)
+.+=+|.++.+++|+++|.-..- .+.+ ||- |||||+|++.++.-.. +.| +-++++.-.|..++-..==
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~-Rkf---vR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG-RKF---VRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC-CCE---EEEecCccccHHHhccccc
Confidence 44568999999999999964321 1122 222 9999999999998754 224 3345555544433311100
Q ss_pred HHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCC
Q 000559 233 ESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSK 271 (1422)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~ 271 (1422)
..-..-.....+-+++ .+.+.=+++||.++..
T Consensus 398 ------TYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm 429 (782)
T COG0466 398 ------TYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKM 429 (782)
T ss_pred ------cccccCChHHHHHHHH-hCCcCCeEEeechhhc
Confidence 0001111222222222 2456778999998543
No 357
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=73.99 E-value=8.6 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=17.4
Q ss_pred CCcccc----cccHHHHHHHHhcccc
Q 000559 185 NDDVNF----RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 185 ~~~v~i----GvGKTtLa~~v~~~~~ 206 (1422)
..+++| |.|||||++.+....+
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345666 9999999999987654
No 358
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=73.89 E-value=6.3 Score=46.71 Aligned_cols=79 Identities=15% Similarity=0.172 Sum_probs=46.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC--------------CCCCCh-----hHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS--------------CDFKDL-----NPVQV 250 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------------~~~~~~-----~~~~~ 250 (1422)
|+|||||+..+........=+.++++-+++.. .+.++..++...-.... .+.... .-.+.
T Consensus 171 GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~A~ 250 (494)
T CHL00060 171 GVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTAL 250 (494)
T ss_pred CCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHHHH
Confidence 99999999988776211112678888887754 45666666655111000 011111 11223
Q ss_pred HHHHHhc--cc-eeEEEeccCC
Q 000559 251 KLKQEVA--GR-KFLIVLDDVW 269 (1422)
Q Consensus 251 ~l~~~l~--~k-~~LlVlDdv~ 269 (1422)
.+.++++ ++ ++||++||+-
T Consensus 251 tiAEyfrd~g~~~VLll~DslT 272 (494)
T CHL00060 251 TMAEYFRDVNKQDVLLFIDNIF 272 (494)
T ss_pred HHHHHHHHcCCCCEEEEcccch
Confidence 4666674 44 9999999993
No 359
>PRK13531 regulatory ATPase RavA; Provisional
Probab=73.87 E-value=2.8 Score=49.40 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=33.4
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc-cccHHHHHHHHhcccc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i-GvGKTtLa~~v~~~~~ 206 (1422)
..++||++.++.+...+..+.. .-..|. |+|||++|+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag~h-VLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGES-VFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccCCC-EEEECCCChhHHHHHHHHHHHhc
Confidence 4589999999999999876532 122344 9999999999998543
No 360
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=73.47 E-value=1.7e+02 Score=34.29 Aligned_cols=72 Identities=8% Similarity=-0.060 Sum_probs=43.0
Q ss_pred EEE-EEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchHHHH
Q 000559 291 KII-VTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAART 365 (1422)
Q Consensus 291 ~il-vTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 365 (1422)
||| .||-..+-.+.. |-.+..+.+.--+.+....||.++..... . ..++.+|.+...|--+.-..
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~-------h~L~~eie~l~~~~~~tPA~ 408 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---D-------HRLFDEIERLIEETEVTPAQ 408 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---C-------cchhHHHHHHhhcCccCHHH
Confidence 555 577665543221 22235567888889999999998873321 1 23566677766666666555
Q ss_pred HHHHHhc
Q 000559 366 LGGLLRC 372 (1422)
Q Consensus 366 ~~~~l~~ 372 (1422)
+|..|=.
T Consensus 409 V~e~lm~ 415 (457)
T KOG0743|consen 409 VAEELMK 415 (457)
T ss_pred HHHHHhh
Confidence 5554433
No 361
>PRK08233 hypothetical protein; Provisional
Probab=73.46 E-value=5.3 Score=41.26 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=14.0
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|.||||+|+.++....
T Consensus 13 GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 13 GGGKTTLTERLTHKLK 28 (182)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 9999999999987653
No 362
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=73.42 E-value=5.3 Score=40.84 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=32.0
Q ss_pred HHHHHhccc-eeEEEeccCCCC---CccchhhhhccCCCCCCCcEEEEEcCChH
Q 000559 251 KLKQEVAGR-KFLIVLDDVWSK---NYGLWEVLKSPFMAGAPGSKIIVTTRDEN 300 (1422)
Q Consensus 251 ~l~~~l~~k-~~LlVlDdv~~~---~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 300 (1422)
..++.+... -=++|||.+-.. ..-..+++...+.....+..||+|-|+..
T Consensus 106 ~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 106 EAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 344455444 449999998331 12345566666666666789999999853
No 363
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=73.41 E-value=40 Score=37.45 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=44.3
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHH
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDE-NVALTLGCPGECHNLELLSDNDCWSVFK 327 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~ 327 (1422)
+++-.+|+||+.......+..+...+-.-..++.+|++|.+. .+.....+.-..+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 556689999998877778888877776555566777766554 44444433325566665 5555555553
No 364
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=73.37 E-value=8.7 Score=44.56 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=21.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD 221 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~ 221 (1422)
|+|||||+.+++.... ..-..++||+..+.
T Consensus 92 G~GKStLllq~a~~~a-~~g~~VlYvs~EEs 121 (372)
T cd01121 92 GIGKSTLLLQVAARLA-KRGGKVLYVSGEES 121 (372)
T ss_pred CCCHHHHHHHHHHHHH-hcCCeEEEEECCcC
Confidence 9999999999987643 22346788876544
No 365
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=73.28 E-value=10 Score=41.41 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=40.7
Q ss_pred cccHHHHH-HHHhcccccccCCcE-EEEEEcCcc-cHHHHHHHHHHHhcCC-------CCCCCChhH-----HHHHHHHH
Q 000559 191 RVGKTTLA-RLVYNDLAVEDFNSR-AWVCVSDDF-DILRISKAILESITLS-------SCDFKDLNP-----VQVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa-~~v~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~l~~~ 255 (1422)
|+|||+|| ..+.+.. .-+.+ +++-+++.. .+.++.+++.+.=... ..+...... ....+.++
T Consensus 79 g~GKt~L~l~~i~~~~---~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~ 155 (274)
T cd01132 79 QTGKTAIAIDTIINQK---GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEY 155 (274)
T ss_pred CCCccHHHHHHHHHhc---CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHH
Confidence 89999996 5666542 23333 666676654 4556666655432111 011111111 11223333
Q ss_pred h--ccceeEEEeccC
Q 000559 256 V--AGRKFLIVLDDV 268 (1422)
Q Consensus 256 l--~~k~~LlVlDdv 268 (1422)
+ +++.+|+|+||+
T Consensus 156 fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 156 FMDNGKHALIIYDDL 170 (274)
T ss_pred HHHCCCCEEEEEcCh
Confidence 3 489999999999
No 366
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=73.26 E-value=9.2 Score=44.87 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=40.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCC-------CCCCChhH-----HHHHHHHHh--
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSS-------CDFKDLNP-----VQVKLKQEV-- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~l~~~l-- 256 (1422)
|+|||||++.+....+ ....++...-.+...+.++.++.+..-+... .+...... ....+.+++
T Consensus 150 G~GKTtLl~~I~~~~~--~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd 227 (418)
T TIGR03498 150 GVGKSTLLSMLARNTD--ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRD 227 (418)
T ss_pred CCChHHHHHHHhCCCC--CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 1222332222234445556555444322111 11111111 122344555
Q ss_pred ccceeEEEeccC
Q 000559 257 AGRKFLIVLDDV 268 (1422)
Q Consensus 257 ~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 228 ~G~~Vll~~Dsl 239 (418)
T TIGR03498 228 QGKDVLLLMDSV 239 (418)
T ss_pred cCCCEEEeccch
Confidence 488999999999
No 367
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=73.16 E-value=3 Score=40.36 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=26.2
Q ss_pred chhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccc
Q 000559 168 DGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 168 ~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~ 206 (1422)
+++..++-+.|...-....+|.. |.||||++|.++.-..
T Consensus 8 ~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 8 EEATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 45556666666554444455544 9999999999987544
No 368
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=73.04 E-value=5.5 Score=46.03 Aligned_cols=74 Identities=16% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCcccccchhHHHHHHHhcCC------------CCCCCc---ccc-cccHHHHHHHHhccccccc--CCcEEEEEEc-Cc
Q 000559 161 EPAVYGRDGDKAKVLDMVLSH------------DTNNDD---VNF-RVGKTTLARLVYNDLAVED--FNSRAWVCVS-DD 221 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~------------~~~~~~---v~i-GvGKTtLa~~v~~~~~~~~--F~~~~wv~~s-~~ 221 (1422)
+..+||.++.+..+.-.+... +...+. +|. |+|||++|+.++....... .+..-++..+ ..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence 345788888888876665531 001122 223 9999999999998765433 2332222221 12
Q ss_pred ccHHHHHHHHHHH
Q 000559 222 FDILRISKAILES 234 (1422)
Q Consensus 222 ~~~~~~~~~i~~~ 234 (1422)
.+..++++.+.+.
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 2455555555444
No 369
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=72.94 E-value=1.6 Score=44.23 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=35.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCC---CChhHHHHHHHHHhccceeEEEecc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDF---KDLNPVQVKLKQEVAGRKFLIVLDD 267 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDd 267 (1422)
|.||||+|..++..... .++++.....+ -.+..+.|..........- .....+...+.....+ .-++++|.
T Consensus 11 ~sGKS~~a~~l~~~~~~----~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~-~~~VlID~ 84 (170)
T PRK05800 11 RSGKSRFAERLAAQSGL----QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP-GRCVLVDC 84 (170)
T ss_pred CccHHHHHHHHHHHcCC----CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC-CCEEEehh
Confidence 89999999999865321 23444433333 3344555544433221111 1111233334333332 33788888
Q ss_pred C
Q 000559 268 V 268 (1422)
Q Consensus 268 v 268 (1422)
+
T Consensus 85 L 85 (170)
T PRK05800 85 L 85 (170)
T ss_pred H
Confidence 6
No 370
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=72.82 E-value=9.1 Score=38.51 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=23.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCccc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFD 223 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~ 223 (1422)
|.||||+|..++.... ..-..++|++......
T Consensus 9 G~GKT~l~~~i~~~~~-~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 9 GSGKTTLALQLALNIA-TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCHHHHHHHHHHHHH-hcCCEEEEEECCcchH
Confidence 9999999999987653 2234678888766544
No 371
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=72.67 E-value=29 Score=36.81 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=77.4
Q ss_pred CCcccccchhHHH---HHHHhcCCCCCC----Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHH
Q 000559 161 EPAVYGRDGDKAK---VLDMVLSHDTNN----DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISK 229 (1422)
Q Consensus 161 ~~~~vGr~~~~~~---i~~~l~~~~~~~----~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 229 (1422)
-+++||.++.+.+ |++.|..++.-+ +.|-. |.|||.+|+++++..++. .+-|.+ . +
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp----~l~vka------t---~ 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP----LLLVKA------T---E 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc----eEEech------H---H
Confidence 3568898876554 667776654322 22322 999999999999987642 122211 1 1
Q ss_pred HHHHHhcCCCCCCCChhHHHHHHHHHh----ccceeEEEeccCCCCCc--------cch----hhhhccCC--CCCCCcE
Q 000559 230 AILESITLSSCDFKDLNPVQVKLKQEV----AGRKFLIVLDDVWSKNY--------GLW----EVLKSPFM--AGAPGSK 291 (1422)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~~~--------~~~----~~l~~~~~--~~~~gs~ 291 (1422)
-|-+.. .+.+.++++.. +.-++.+.+|.++.... .+. ..+..-+. ..+.|-.
T Consensus 187 liGehV----------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 187 LIGEHV----------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHh----------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111111 12222333322 24588999998754210 111 11111121 1345666
Q ss_pred EEEEcCChHHHHhh-CCC-CceeeCCCCChhhHHHHHHHhh
Q 000559 292 IIVTTRDENVALTL-GCP-GECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 292 ilvTtR~~~v~~~~-~~~-~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
.|-.|......+.. ... ..-++...-+++|-.+++..++
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 67777766654322 111 1445555667778888887777
No 372
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=72.67 E-value=11 Score=44.77 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=41.5
Q ss_pred cccHHHHH-HHHhcccccccCCcE-EEEEEcCcc-cHHHHHHHHHHHhcCCCC-----CCCC--hhHH-----HHHHHHH
Q 000559 191 RVGKTTLA-RLVYNDLAVEDFNSR-AWVCVSDDF-DILRISKAILESITLSSC-----DFKD--LNPV-----QVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa-~~v~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~~~-----~~~l~~~ 255 (1422)
|+|||||| ..+.+.. .-+.+ +++-+++.. .+.++.+++.+.=..... ..++ .... ...+.++
T Consensus 151 g~GKt~Lal~~I~~q~---~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEy 227 (485)
T CHL00059 151 QTGKTAVATDTILNQK---GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEY 227 (485)
T ss_pred CCCHHHHHHHHHHhcc---cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHH
Confidence 99999996 4455542 23434 778887654 455565555543211110 1111 1110 1123344
Q ss_pred h--ccceeEEEeccCC
Q 000559 256 V--AGRKFLIVLDDVW 269 (1422)
Q Consensus 256 l--~~k~~LlVlDdv~ 269 (1422)
+ +++++|+|+||+-
T Consensus 228 fr~~G~~VLlv~DdlT 243 (485)
T CHL00059 228 FMYRGRHTLIIYDDLS 243 (485)
T ss_pred HHHcCCCEEEEEcChh
Confidence 4 4889999999993
No 373
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=72.62 E-value=7.5 Score=45.85 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=38.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc-ccHHHHHHHHHHHhcCCCC---CCCChhHHHHHHHHHhcccee-EEEe
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-FDILRISKAILESITLSSC---DFKDLNPVQVKLKQEVAGRKF-LIVL 265 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~k~~-LlVl 265 (1422)
|+||||.|..++.....+.-..++-|++... +...+-++..+.+.+.+.. ...+..+......+....+.+ ++|+
T Consensus 109 GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~~~DvVII 188 (428)
T TIGR00959 109 GSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKENGFDVVIV 188 (428)
T ss_pred CCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999888776643112123455554422 1223334444555543321 112333333333333434445 6777
Q ss_pred ccCC
Q 000559 266 DDVW 269 (1422)
Q Consensus 266 Ddv~ 269 (1422)
|-.-
T Consensus 189 DTaG 192 (428)
T TIGR00959 189 DTAG 192 (428)
T ss_pred eCCC
Confidence 7663
No 374
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=72.40 E-value=7.8 Score=47.60 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=36.6
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD 221 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~ 221 (1422)
..++|....+.++++.+..-......|-| |.||+++|+.+...-. +.-..-+.|+++.-
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~-r~~~pfv~inca~~ 266 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP-RGKKPFLALNCASI 266 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC-CCCCCeEEeccccC
Confidence 46899988888887777543222233444 9999999999765422 21223345655543
No 375
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=72.40 E-value=4.6 Score=46.68 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=42.5
Q ss_pred CCcccccchhHHHHHHHhcCC--------CCC----CCc---ccc-cccHHHHHHHHhccccccc--CCcEEEEEEc-Cc
Q 000559 161 EPAVYGRDGDKAKVLDMVLSH--------DTN----NDD---VNF-RVGKTTLARLVYNDLAVED--FNSRAWVCVS-DD 221 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~--------~~~----~~~---v~i-GvGKTtLa~~v~~~~~~~~--F~~~~wv~~s-~~ 221 (1422)
+..++|.++.+..+..++... ... ... +|. |+|||++|+.++....... ++..-|...+ ..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 456889999988888777531 100 122 222 9999999999998765332 3433222221 12
Q ss_pred ccHHHHHHHHHHHh
Q 000559 222 FDILRISKAILESI 235 (1422)
Q Consensus 222 ~~~~~~~~~i~~~l 235 (1422)
.+...+.+.+.+..
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 24445555554443
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=72.25 E-value=6.1 Score=46.60 Aligned_cols=15 Identities=40% Similarity=0.302 Sum_probs=12.0
Q ss_pred cccHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDL 205 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~ 205 (1422)
|+||||.|..++...
T Consensus 110 GsGKTTtaakLA~~l 124 (433)
T PRK10867 110 GAGKTTTAGKLAKYL 124 (433)
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999887776644
No 377
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=72.12 E-value=48 Score=37.40 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=30.8
Q ss_pred cchhHHHHHHHhcCCCCCCCcccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHH
Q 000559 167 RDGDKAKVLDMVLSHDTNNDDVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDIL 225 (1422)
Q Consensus 167 r~~~~~~i~~~l~~~~~~~~~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~ 225 (1422)
..+....++..+... ...-..|. |.||||+|++++..... ..+.|..+...+..
T Consensus 50 ~~~~~~~vl~~l~~~-~~ilL~G~pGtGKTtla~~lA~~l~~----~~~rV~~~~~l~~~ 104 (327)
T TIGR01650 50 DKATTKAICAGFAYD-RRVMVQGYHGTGKSTHIEQIAARLNW----PCVRVNLDSHVSRI 104 (327)
T ss_pred CHHHHHHHHHHHhcC-CcEEEEeCCCChHHHHHHHHHHHHCC----CeEEEEecCCCChh
Confidence 334455566666432 11112233 99999999999987542 13455555554443
No 378
>PRK05922 type III secretion system ATPase; Validated
Probab=71.79 E-value=7.6 Score=45.52 Aligned_cols=75 Identities=9% Similarity=0.160 Sum_probs=40.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc-ccHHHHHHHHHHHhcCCCC-------CCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-FDILRISKAILESITLSSC-------DFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~-------~~~~~~-----~~~~~l~~~l- 256 (1422)
|+|||||.+.+..... .+....+-+++. ..+.+.+.+.......... +..... .....+.+++
T Consensus 167 G~GKSTLL~~Ia~~~~---~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfr 243 (434)
T PRK05922 167 GSGKSSLLSTIAKGSK---STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFR 243 (434)
T ss_pred CCChHHHHHHHhccCC---CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987632 233444444443 2344555444433322111 111111 1122344555
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 244 d~G~~VLl~~Dsl 256 (434)
T PRK05922 244 DQGHRVLFIMDSL 256 (434)
T ss_pred HcCCCEEEeccch
Confidence 489999999999
No 379
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=71.69 E-value=8.5 Score=44.79 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=54.4
Q ss_pred cccccchhHHHHHHHhcCCCCCCCc---c-cc-cccHHHHHHHHhcccccccCCcEEEEEEcCcc-------cHHHHHHH
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNNDD---V-NF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-------DILRISKA 230 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~~~---v-~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-------~~~~~~~~ 230 (1422)
--|||+.+.+.|.+.|..-..+... | |= |.|||.+.+.+.+....++|- ++.|.++... ....+.++
T Consensus 26 ~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fv-vs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 26 IAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFV-VSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred eeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCE-EEEEecCCCcccccccccHHHHHHH
Confidence 4699999999998887532222222 1 22 999999999999887655574 6788877642 45678999
Q ss_pred HHHHhcCCC
Q 000559 231 ILESITLSS 239 (1422)
Q Consensus 231 i~~~l~~~~ 239 (1422)
|++.+....
T Consensus 105 l~~nL~t~~ 113 (416)
T PF10923_consen 105 LMRNLSTKT 113 (416)
T ss_pred HHHhcCCCC
Confidence 999997654
No 380
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=71.64 E-value=7.9 Score=40.53 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=35.9
Q ss_pred cccHHHHHHHHhcccccccCC---cEEEEEEcCcccHHHHHHHHHHHh----cCCCCCCCChhHHHHHHHHHhccceeE
Q 000559 191 RVGKTTLARLVYNDLAVEDFN---SRAWVCVSDDFDILRISKAILESI----TLSSCDFKDLNPVQVKLKQEVAGRKFL 262 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~~~l~~k~~L 262 (1422)
|.||||+|+.+.......... ....+.............. -... .......-+.+.+.+.++...+++..-
T Consensus 9 gSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~~i~ 86 (194)
T PF00485_consen 9 GSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKALKNGGSIE 86 (194)
T ss_dssp TSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTSCEE
T ss_pred CCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHHhCCCccc
Confidence 999999999998876533343 2333333222221121111 1111 111223455666777777665666543
No 381
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=71.61 E-value=11 Score=44.36 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=41.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc-ccHHHHHHHHHHHhcCC-------CCCCCChhH-----HHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-FDILRISKAILESITLS-------SCDFKDLNP-----VQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~l~~~l- 256 (1422)
|.|||||++.+.+... .+..+++-+++. ..+.+...+....=... ..+....+. ....+.+++
T Consensus 165 G~GKSTLL~~I~~~~~---~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfr 241 (433)
T PRK07594 165 GVGKSTLLAMLCNAPD---ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFR 241 (433)
T ss_pred CCCccHHHHHhcCCCC---CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 444566666654 34445555543211000 001111111 122344444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 242 d~G~~VLl~~Dsl 254 (433)
T PRK07594 242 DNGKRVVLLADSL 254 (433)
T ss_pred HCCCcEEEEEeCH
Confidence 488999999999
No 382
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.39 E-value=12 Score=43.03 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=39.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhcc-ceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG-RKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 268 (1422)
|+||||++..++.....+++ .+..+++.... ...+-++..++.++.+.....+..++...+...-.. +.=++++|-.
T Consensus 251 GvGKTTTiaKLA~~L~~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 251 GVGKTTTLAKMAWQFHGKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTA 329 (436)
T ss_pred CCcHHHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 99999999999865432223 35566654321 122223344444443322234445544444333221 2346777776
Q ss_pred CC
Q 000559 269 WS 270 (1422)
Q Consensus 269 ~~ 270 (1422)
-.
T Consensus 330 GR 331 (436)
T PRK11889 330 GK 331 (436)
T ss_pred cc
Confidence 43
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=71.30 E-value=9.6 Score=43.35 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=38.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc--cHHHHHHHHHHHhcCCCCC---CCChhHHH-HHHHHHhccceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF--DILRISKAILESITLSSCD---FKDLNPVQ-VKLKQEVAGRKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~---~~~~~~~~-~~l~~~l~~k~~LlV 264 (1422)
|+||||++..++......++. ++.++.. .+ ...+-++..++.++.+... ..+..... ..+...-....=+++
T Consensus 150 GvGKTTtiakLA~~l~~~g~~-V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVL 227 (336)
T PRK14974 150 GTGKTTTIAKLAYYLKKNGFS-VVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVL 227 (336)
T ss_pred CCCHHHHHHHHHHHHHHcCCe-EEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 999999888887655423243 4445432 22 2233445566666543221 12222222 222222222223888
Q ss_pred eccCCCC
Q 000559 265 LDDVWSK 271 (1422)
Q Consensus 265 lDdv~~~ 271 (1422)
+|-+-..
T Consensus 228 IDTaGr~ 234 (336)
T PRK14974 228 IDTAGRM 234 (336)
T ss_pred EECCCcc
Confidence 8888443
No 384
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=71.26 E-value=9.5 Score=41.08 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=63.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEE------EcCcccHHHHHHHHHHHhcCCCC------CCCChhHHH-HHHHHHhc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVC------VSDDFDILRISKAILESITLSSC------DFKDLNPVQ-VKLKQEVA 257 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~-~~l~~~l~ 257 (1422)
|.||||+|+.+..=.+ .-.+.+++. .+ .....+-..++++.++.... ..-+-.+.+ -.+.+.|.
T Consensus 49 G~GKSTlgr~i~~L~~--pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 49 GCGKSTLGRLILGLEE--PTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred CCCHHHHHHHHHcCcC--CCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh
Confidence 9999999999987543 112223322 11 22233445566666654321 011111222 24777888
Q ss_pred cceeEEEeccCCCCCc-cchhhhhccCCC--CCCCcEEEEEcCChHHHHhhCCC
Q 000559 258 GRKFLIVLDDVWSKNY-GLWEVLKSPFMA--GAPGSKIIVTTRDENVALTLGCP 308 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~-~~~~~l~~~~~~--~~~gs~ilvTtR~~~v~~~~~~~ 308 (1422)
-+.-++|.|..-+.-+ ..-.++...+.+ ...|-..+.-|-+-.|+..+...
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 8999999998744311 111222222221 22467788888888888776543
No 385
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=71.22 E-value=7.5 Score=43.59 Aligned_cols=74 Identities=20% Similarity=0.101 Sum_probs=42.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCC-----CCCChhHHHHHHHHHhcc-ceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSC-----DFKDLNPVQVKLKQEVAG-RKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~~-k~~LlV 264 (1422)
|.||||||.++..... +.-..++||+....++.. .++.++.+.. ..+..++....+.+.++. ..-++|
T Consensus 63 ssGKttLaL~~ia~~q-~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVV 136 (322)
T PF00154_consen 63 SSGKTTLALHAIAEAQ-KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVV 136 (322)
T ss_dssp TSSHHHHHHHHHHHHH-HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEE
T ss_pred CCchhhhHHHHHHhhh-cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEE
Confidence 8999999998887643 224568999998877643 3344443211 223445555666666653 445888
Q ss_pred eccCCC
Q 000559 265 LDDVWS 270 (1422)
Q Consensus 265 lDdv~~ 270 (1422)
+|-|-.
T Consensus 137 vDSv~a 142 (322)
T PF00154_consen 137 VDSVAA 142 (322)
T ss_dssp EE-CTT
T ss_pred EecCcc
Confidence 898833
No 386
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=71.19 E-value=3.9 Score=41.82 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.4
Q ss_pred cccHHHHHHHHhcccccc
Q 000559 191 RVGKTTLARLVYNDLAVE 208 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~ 208 (1422)
|.||||+|+.+.+...+-
T Consensus 10 GaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 10 GAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred CCCHHHHHHHHHHHhCCc
Confidence 999999999999985543
No 387
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=71.13 E-value=19 Score=45.59 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=62.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|.|||++|+.++....+. | +.++.+. +. .... ..........+...-...+++|++|+++.
T Consensus 195 G~GKt~~~~~~a~~~~~~-f---~~is~~~------~~----~~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~ 255 (644)
T PRK10733 195 GTGKTLLAKAIAGEAKVP-F---FTISGSD------FV----EMFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDA 255 (644)
T ss_pred CCCHHHHHHHHHHHcCCC-E---EEEehHH------hH----Hhhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhh
Confidence 999999999998875422 2 2222211 11 0110 01111222233333345678999999854
Q ss_pred CC----------ccchhh----hhccCCC--CCCCcEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhh
Q 000559 271 KN----------YGLWEV----LKSPFMA--GAPGSKIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHA 330 (1422)
Q Consensus 271 ~~----------~~~~~~----l~~~~~~--~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a 330 (1422)
-. ...++. +...+.. ...+.-||.||...+..+.. +-.+..+.+...+.++-.++++.+.
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 21 011211 2111211 12344566688776644322 1123677788888888888887776
No 388
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=70.82 E-value=4.4 Score=43.01 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=29.3
Q ss_pred ccceeEEEeccCCCCCc-cchh----hhhccCCCC-CCCcEEEEEcCChHHHHhh
Q 000559 257 AGRKFLIVLDDVWSKNY-GLWE----VLKSPFMAG-APGSKIIVTTRDENVALTL 305 (1422)
Q Consensus 257 ~~k~~LlVlDdv~~~~~-~~~~----~l~~~~~~~-~~gs~ilvTtR~~~v~~~~ 305 (1422)
..++.|+++|..-.... .+.. .+...+... ..+..+|+||-+.+++...
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 46789999999865421 1111 122222222 2345899999998887654
No 389
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.59 E-value=13 Score=42.68 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=28.9
Q ss_pred ccc-cccHHHHHHHHhcccccccCCcEEEEEEc-CcccHHHHHHHHHHHhcCC
Q 000559 188 VNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVS-DDFDILRISKAILESITLS 238 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~ 238 (1422)
||. |.||||-|-.+++..+-+++. +.-|++. ..+...+=++.++++++.+
T Consensus 106 vGLQGsGKTTt~~KLA~~lkk~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 106 VGLQGSGKTTTAGKLAKYLKKKGKK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred EeccCCChHhHHHHHHHHHHHcCCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 344 999999998888776532233 3334332 2333445556666666544
No 390
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.47 E-value=75 Score=39.52 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=56.9
Q ss_pred cCCCCcccccchhHHHHHHHhcCCCC-------CC-Ccccc------cccHHHHHHHHhcccccccCCcEEEEEEcCccc
Q 000559 158 LATEPAVYGRDGDKAKVLDMVLSHDT-------NN-DDVNF------RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFD 223 (1422)
Q Consensus 158 ~~~~~~~vGr~~~~~~i~~~l~~~~~-------~~-~~v~i------GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~ 223 (1422)
.+.-.++=|-++-+.+|.+-+.-+-. +- +.-|| |.|||-+||+|+.... ..|++|-.+
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKGP-- 739 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKGP-- 739 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecCH--
Confidence 34445677888888888887654211 11 12333 9999999999998855 345666443
Q ss_pred HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 224 ILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
+++..-- .++.+.+.+...+.=..++|.|.||.+++
T Consensus 740 ------ELLNMYV-----GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ------ELLNMYV-----GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ------HHHHHHh-----cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2222221 12233333344444457899999999976
No 391
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=70.46 E-value=9 Score=48.78 Aligned_cols=127 Identities=17% Similarity=0.089 Sum_probs=65.0
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
..++|....+.++++....-......|-| |+||+++|+.+.+.-... -..-+.|++..-+. ..+..+++.....
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-~~pfv~vnc~~~~~-~~~~~elfg~~~~ 402 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-AGPYIAVNCQLYPD-EALAEEFLGSDRT 402 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-CCCeEEEECCCCCh-HHHHHHhcCCCCc
Confidence 45889888888887777654333333434 999999999998753211 12234454443321 2222222221110
Q ss_pred CCCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEEcCC
Q 000559 238 SSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVTTRD 298 (1422)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~ 298 (1422)
.. ...... .+ -....-.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 403 ~~-~~~~~g----~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 403 DS-ENGRLS----KF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred Cc-cCCCCC----ce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 00 000000 00 01234469999997665555555655543221 13467777654
No 392
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=70.42 E-value=6 Score=37.32 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=43.2
Q ss_pred hHHHHHHHhcCCCCCCCcccccccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHH
Q 000559 170 DKAKVLDMVLSHDTNNDDVNFRVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQ 249 (1422)
Q Consensus 170 ~~~~i~~~l~~~~~~~~~v~iGvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 249 (1422)
+.+++.+.+.-++. |||||+|+..+..+. |....-.+.+-++-++.+--. -+.....-.+....+.-.
T Consensus 4 ~~dhLfkllIigDs-------gVGKssLl~rF~ddt----Fs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFr 71 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDS-------GVGKSSLLLRFADDT----FSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFR 71 (198)
T ss_pred cHHHHHHHHeecCC-------cccHHHHHHHHhhcc----cccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHH
Confidence 45566666543333 899999999988763 433322222222211110000 001111111222223333
Q ss_pred HHHHHHhccceeEEEeccCCCC
Q 000559 250 VKLKQEVAGRKFLIVLDDVWSK 271 (1422)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~ 271 (1422)
.....+.++...++|.=||-+.
T Consensus 72 titstyyrgthgv~vVYDVTn~ 93 (198)
T KOG0079|consen 72 TITSTYYRGTHGVIVVYDVTNG 93 (198)
T ss_pred HHHHHHccCCceEEEEEECcch
Confidence 3444555677788888888554
No 393
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.35 E-value=2.4 Score=27.08 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=13.0
Q ss_pred CcceeeecCccccccCc
Q 000559 592 HLRYLNFSGTRICHIPE 608 (1422)
Q Consensus 592 ~L~~L~L~~n~i~~lp~ 608 (1422)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57778888888777775
No 394
>PTZ00088 adenylate kinase 1; Provisional
Probab=70.14 E-value=2.4 Score=45.36 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.3
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|+||||+|+.+++...
T Consensus 16 GsGK~T~a~~La~~~g 31 (229)
T PTZ00088 16 GVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999988754
No 395
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=70.05 E-value=10 Score=38.70 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=30.4
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHH
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVAL 303 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~ 303 (1422)
.+.+.+..++=++++|+.... +......+...+.. ...|..||++|.+.....
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 355556677779999987543 11222223332221 123667888888877654
No 396
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=70.05 E-value=6.1 Score=46.96 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=46.3
Q ss_pred cccHHHHHHHHhcccccc---cCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChh-----HHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVE---DFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLN-----PVQVKLKQ 254 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~---~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~~l~~ 254 (1422)
|+|||||+..++++.... .=-.++++-+++.. .+.++.+++...=.... .+..... -....+.+
T Consensus 153 G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE 232 (460)
T PRK04196 153 GLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAE 232 (460)
T ss_pred CCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999875432 11156777777654 46666666655321111 0111111 11223556
Q ss_pred Hhc---cceeEEEeccC
Q 000559 255 EVA---GRKFLIVLDDV 268 (1422)
Q Consensus 255 ~l~---~k~~LlVlDdv 268 (1422)
+++ ++++|+++||+
T Consensus 233 yfr~d~G~~VLli~Dsl 249 (460)
T PRK04196 233 YLAFEKGMHVLVILTDM 249 (460)
T ss_pred HHHHhcCCcEEEEEcCh
Confidence 665 58999999999
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=70.04 E-value=7.6 Score=39.71 Aligned_cols=27 Identities=30% Similarity=0.119 Sum_probs=17.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCV 218 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~ 218 (1422)
|.||||++..++......++ .++.|+.
T Consensus 10 G~GKTt~~~~la~~~~~~g~-~v~~i~~ 36 (173)
T cd03115 10 GVGKTTTAAKLALYLKKKGK-KVLLVAA 36 (173)
T ss_pred CCCHHHHHHHHHHHHHHCCC-cEEEEEc
Confidence 99999999998876432222 2444544
No 398
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.98 E-value=2.6 Score=27.11 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=7.2
Q ss_pred CcCeeeccCCcChhh
Q 000559 1360 SLQQLYVEDCPQLGA 1374 (1422)
Q Consensus 1360 sL~~L~i~~c~~L~~ 1374 (1422)
+|+.|++++|+.+++
T Consensus 3 ~L~~L~l~~C~~itD 17 (26)
T smart00367 3 NLRELDLSGCTNITD 17 (26)
T ss_pred CCCEeCCCCCCCcCH
Confidence 444555555554443
No 399
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=69.64 E-value=2.1 Score=41.15 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=13.6
Q ss_pred cccHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDL 205 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~ 205 (1422)
|+||||+|+.+....
T Consensus 8 GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 8 GSGKTTIAKELAERL 22 (129)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998873
No 400
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=69.64 E-value=17 Score=43.75 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHH
Q 000559 174 VLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAIL 232 (1422)
Q Consensus 174 i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~ 232 (1422)
+++.|..-.. .+.++| |+|||+|+.++++. ..-|.++++-+++.- .+.+++.++-
T Consensus 216 vID~lfPi~k-Gqr~~I~gg~G~GKT~l~~~lak~---s~aDviVyvg~GERG~Em~evle~fp 275 (591)
T TIGR01042 216 VLDALFPCVQ-GGTTAIPGAFGCGKTVISQSLSKY---SNSDAIVYVGCGERGNEMAEVLMDFP 275 (591)
T ss_pred hhhhccchhc-CCeEEEEcCCCcCHHHHHHHHHhc---cCcCEEEEEEEeechHHHHHHHHHhH
Confidence 4454443222 244555 99999999998764 336778888887754 4666666653
No 401
>PRK09099 type III secretion system ATPase; Provisional
Probab=69.47 E-value=10 Score=44.73 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=40.6
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC-------CCCCCChhH-----HHHHHHHHh--
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS-------SCDFKDLNP-----VQVKLKQEV-- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~l~~~l-- 256 (1422)
|.|||||++.++..... -..+++..-.+...+.++.+.+...-... ..+...... ....+.+++
T Consensus 173 G~GKTtLl~~ia~~~~~--d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd 250 (441)
T PRK09099 173 GVGKSTLMGMFARGTQC--DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRD 250 (441)
T ss_pred CCCHHHHHHHHhCCCCC--CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876432 12344333333445555555554432111 011111111 112344444
Q ss_pred ccceeEEEeccC
Q 000559 257 AGRKFLIVLDDV 268 (1422)
Q Consensus 257 ~~k~~LlVlDdv 268 (1422)
++|++|+++||+
T Consensus 251 ~G~~VLl~~Dsl 262 (441)
T PRK09099 251 RGLRVLLMMDSL 262 (441)
T ss_pred cCCCEEEeccch
Confidence 488999999999
No 402
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=69.33 E-value=10 Score=42.16 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=34.4
Q ss_pred Ccccc----cccHHHHHHHHhccccccc-CCcEEEEEEcCcccHHHHHHHHHHHh-cCCCCCCCChhHHHHHHHHHhccc
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVED-FNSRAWVCVSDDFDILRISKAILESI-TLSSCDFKDLNPVQVKLKQEVAGR 259 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~l~~~l~~k 259 (1422)
.+||| |.||||+|+.+..-..... -..+..++...-....+.....- .+ .....+.-+.+.....+.+.-.++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-~~~~~g~P~s~D~~~l~~~L~~Lk~g~ 141 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERN-LMKKKGFPESYDMHRLVKFLSDLKSGK 141 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcC-CccccCCChhccHHHHHHHHHHHHCCC
Confidence 45677 9999999987754322111 12345555444322222222210 00 011223445566666665554443
No 403
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=69.04 E-value=11 Score=47.63 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=46.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCC-----CCCChhHHHHHHHHHhc-cceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSC-----DFKDLNPVQVKLKQEVA-GRKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~~l~-~k~~LlV 264 (1422)
|+||||||.+++.... ..=..++||+..+.++. ..+++++.... .....+.....+.+.++ ++--|||
T Consensus 70 GsGKTtLal~~~~~a~-~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVV 143 (790)
T PRK09519 70 SSGKTTVALHAVANAQ-AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVV 143 (790)
T ss_pred CCCHHHHHHHHHHHHH-HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEE
Confidence 9999999988665432 12356899998887773 36666665421 23344555555555554 3556899
Q ss_pred eccCC
Q 000559 265 LDDVW 269 (1422)
Q Consensus 265 lDdv~ 269 (1422)
+|-+-
T Consensus 144 IDSI~ 148 (790)
T PRK09519 144 IDSVA 148 (790)
T ss_pred Ecchh
Confidence 99883
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.94 E-value=13 Score=43.75 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=37.2
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCc-ccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDD-FDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|+||||++..++....... .+.+.++..... ....+-+...++.++.+.....+..+....+ ..++++ -++++|-.
T Consensus 201 G~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~~~-d~VLIDTa 278 (420)
T PRK14721 201 GVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELRGK-HMVLIDTV 278 (420)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhcCC-CEEEecCC
Confidence 9999999987776432222 334555544331 2223334445555554433334444433222 233443 34556655
No 405
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=68.58 E-value=12 Score=41.23 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=21.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF 222 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~ 222 (1422)
|.||||+|.+++.... +.=..+++++..++.
T Consensus 46 GtGKT~l~~qf~~~~a-~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 46 DTGKSLMVEQFAVTQA-SRGNPVLFVTVESPA 76 (259)
T ss_pred CCCHHHHHHHHHHHHH-hCCCcEEEEEecCCc
Confidence 9999999999765432 223467888887543
No 406
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=68.48 E-value=30 Score=36.87 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHhhC
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALTLG 306 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~~~ 306 (1422)
.+.+.+-.+.=++++|.--.. +....+.+...+.. ...|..||++|.+...+....
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVR 204 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhc
Confidence 344555566779999987443 11222233333321 123567888988877665443
No 407
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.19 E-value=16 Score=46.21 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=44.1
Q ss_pred cccHHHHHHHHhccccccc-CCcEEEEEEcCc-ccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVED-FNSRAWVCVSDD-FDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|+||||.+..++....... ...+..|+.... ....+-++...+.++.+.....+.+++...++ .++++ =+|++|=.
T Consensus 195 GvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~~-D~VLIDTA 272 (767)
T PRK14723 195 GVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGDK-HLVLIDTV 272 (767)
T ss_pred CCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcCC-CEEEEeCC
Confidence 9999998888887653222 235566655421 12445556666666655444445555544444 34444 36777766
Q ss_pred C
Q 000559 269 W 269 (1422)
Q Consensus 269 ~ 269 (1422)
-
T Consensus 273 G 273 (767)
T PRK14723 273 G 273 (767)
T ss_pred C
Confidence 4
No 408
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=68.14 E-value=15 Score=43.39 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=40.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC-------CCCCChhH-----HHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS-------CDFKDLNP-----VQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~-----~~~~l~~~l- 256 (1422)
|.|||||++.+..... .+.++...+.... ++.++...+...-.... .+...... ....+.+++
T Consensus 178 G~GKSTLl~~I~g~~~---~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyfr 254 (451)
T PRK05688 178 GVGKSVLLGMMTRFTE---ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFR 254 (451)
T ss_pred CCCHHHHHHHHhCCCC---CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987532 3344444444433 45555555544322111 11111111 112344444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 255 d~G~~VLl~~Dsl 267 (451)
T PRK05688 255 DKGKNVLLLMDSL 267 (451)
T ss_pred HCCCCEEEEecch
Confidence 589999999999
No 409
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=67.97 E-value=18 Score=40.98 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=41.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l- 256 (1422)
|.|||||++.+..... -+..+..-+.+ ..++.++..+....-... ..+..... .....+.+++
T Consensus 79 G~GKTtLl~~Ia~~~~---~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr 155 (326)
T cd01136 79 GVGKSTLLGMIARGTT---ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFR 155 (326)
T ss_pred CCChHHHHHHHhCCCC---CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 22334444443 335555555554432211 11111111 1112233444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
++|.+|+++||+
T Consensus 156 ~~g~~Vll~~Dsl 168 (326)
T cd01136 156 DQGKDVLLLMDSL 168 (326)
T ss_pred HcCCCeEEEeccc
Confidence 589999999998
No 410
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.95 E-value=18 Score=36.88 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=32.3
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHh
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~ 304 (1422)
.+.+.+..++=++++|+--.. +....+.+...+.. ...|..||++|.+......
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 456667788889999997543 11222333333322 1236778999988776553
No 411
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=67.93 E-value=6.2 Score=43.43 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=14.2
Q ss_pred cc-cccHHHHHHHHhcccc
Q 000559 189 NF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 189 ~i-GvGKTtLa~~v~~~~~ 206 (1422)
|+ |.||||+|+++.....
T Consensus 8 G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 8 GLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp --TTSSHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHH
Confidence 44 8999999999988654
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.64 E-value=6.3 Score=45.77 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=13.1
Q ss_pred cccHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDL 205 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~ 205 (1422)
|+||||+|.+++...
T Consensus 233 GvGKTTtaaKLA~~~ 247 (432)
T PRK12724 233 GSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 413
>PRK04328 hypothetical protein; Provisional
Probab=67.52 E-value=14 Score=40.38 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=23.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCccc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFD 223 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~ 223 (1422)
|.|||++|.++....- +.-..++||+..+.+.
T Consensus 33 GsGKT~l~~~fl~~~~-~~ge~~lyis~ee~~~ 64 (249)
T PRK04328 33 GTGKSIFSQQFLWNGL-QMGEPGVYVALEEHPV 64 (249)
T ss_pred CCCHHHHHHHHHHHHH-hcCCcEEEEEeeCCHH
Confidence 9999999998765531 2245689998877543
No 414
>PRK06217 hypothetical protein; Validated
Probab=67.32 E-value=6 Score=40.94 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=19.4
Q ss_pred cccHHHHHHHHhcccccccC--CcEEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDF--NSRAWV 216 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F--~~~~wv 216 (1422)
|.||||+|+++........| |..+|-
T Consensus 11 GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 11 GSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred CCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 99999999999987654333 556663
No 415
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=67.05 E-value=14 Score=43.40 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=41.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l- 256 (1422)
|.|||||++.+..... .+..+.+.+.+.. .+.++.++....=... ..+..... .....+.+++
T Consensus 147 G~GKTtLl~~I~~~~~---~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr 223 (411)
T TIGR03496 147 GVGKSTLLGMMARYTE---ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFR 223 (411)
T ss_pred CCCHHHHHHHHhcCCC---CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887543 2344455555543 4555555444331111 11111111 1112234444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 224 ~~G~~Vll~~Dsl 236 (411)
T TIGR03496 224 DQGKDVLLLMDSL 236 (411)
T ss_pred HCCCCEEEEEeCh
Confidence 588999999999
No 416
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=66.98 E-value=14 Score=44.48 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=41.2
Q ss_pred cccHHHHH-HHHhcccccccCCc-EEEEEEcCcc-cHHHHHHHHHHHhcCCCC-----CCCC--hhHH-----HHHHHHH
Q 000559 191 RVGKTTLA-RLVYNDLAVEDFNS-RAWVCVSDDF-DILRISKAILESITLSSC-----DFKD--LNPV-----QVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa-~~v~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~~~-----~~~l~~~ 255 (1422)
|+|||||| ..+.++. .-+. ++++-+++.. .+.++.+++.+.=..... ..++ .... ...+.++
T Consensus 172 g~GKt~lal~~i~~~~---~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEy 248 (502)
T PRK09281 172 QTGKTAIAIDTIINQK---GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEY 248 (502)
T ss_pred CCCchHHHHHHHHHhc---CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999995 5555542 2344 3788887764 455555555443211110 1111 1111 1123344
Q ss_pred h--ccceeEEEeccCC
Q 000559 256 V--AGRKFLIVLDDVW 269 (1422)
Q Consensus 256 l--~~k~~LlVlDdv~ 269 (1422)
+ +++++|+|+||+-
T Consensus 249 frd~G~~VLli~DdlT 264 (502)
T PRK09281 249 FMDNGKDALIVYDDLS 264 (502)
T ss_pred HHHcCCCEEEEecCch
Confidence 4 3889999999993
No 417
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=66.91 E-value=1.4 Score=44.76 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=22.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCccc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFD 223 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~ 223 (1422)
|+|||.+|+.+++...+......+-++++.-..
T Consensus 13 GvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 13 GVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp TSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred CCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 999999999998875432255666677665433
No 418
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.86 E-value=12 Score=44.83 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=38.5
Q ss_pred ccc-cccHHHHHHHHhccccccc-CCcEEEEEEcCc-ccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEE
Q 000559 188 VNF-RVGKTTLARLVYNDLAVED-FNSRAWVCVSDD-FDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIV 264 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~~~~-F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlV 264 (1422)
||. |+||||++..++.....+. -..+..|+.... ....+-++..++.++.......+..+....+ ..++++ ..++
T Consensus 262 vGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d~-d~VL 339 (484)
T PRK06995 262 MGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRNK-HIVL 339 (484)
T ss_pred ECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccCC-CeEE
Confidence 344 9999999998887653222 224556654331 1223334444555544322222222222222 233343 3666
Q ss_pred eccC
Q 000559 265 LDDV 268 (1422)
Q Consensus 265 lDdv 268 (1422)
+|-.
T Consensus 340 IDTa 343 (484)
T PRK06995 340 IDTI 343 (484)
T ss_pred eCCC
Confidence 6665
No 419
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=66.83 E-value=15 Score=44.30 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=43.2
Q ss_pred cccHHHHH-HHHhcccccccCCcE-EEEEEcCcc-cHHHHHHHHHHHhcCCCC-----CCCC--hhH-----HHHHHHHH
Q 000559 191 RVGKTTLA-RLVYNDLAVEDFNSR-AWVCVSDDF-DILRISKAILESITLSSC-----DFKD--LNP-----VQVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa-~~v~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~~-----~~~~l~~~ 255 (1422)
|+|||||| ..+.+.. ..+.+ +++-+++.. .+.++.+++...=..... ..++ ... ....+.++
T Consensus 171 g~GKt~Lal~~i~~~~---~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiAEy 247 (501)
T TIGR00962 171 QTGKTAVAIDTIINQK---DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMAEY 247 (501)
T ss_pred CCCccHHHHHHHHhhc---CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 99999996 5666652 34553 788887754 456666665543211110 1111 111 11223444
Q ss_pred h--ccceeEEEeccCC
Q 000559 256 V--AGRKFLIVLDDVW 269 (1422)
Q Consensus 256 l--~~k~~LlVlDdv~ 269 (1422)
+ +++++|+|+||+-
T Consensus 248 frd~G~~VLlv~Ddlt 263 (501)
T TIGR00962 248 FRDNGKHALIIYDDLS 263 (501)
T ss_pred HHHcCCCEEEEecchH
Confidence 4 4789999999993
No 420
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=66.81 E-value=20 Score=43.64 Aligned_cols=130 Identities=12% Similarity=0.070 Sum_probs=63.0
Q ss_pred cccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
.++|......++.+.+.........+-+ |.||+++|+.+..... +.....+-|++..-. .+.+...+ ++..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~-~~~~~~~~~~c~~~~--~~~~~~~l--fg~~ 209 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP-RANGPFIALNMAAIP--KDLIESEL--FGHE 209 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC-CCCCCeEEEeCCCCC--HHHHHHHh--cCCC
Confidence 4778777777777666542222222222 9999999999987533 112233344443321 22222222 2211
Q ss_pred CCCCCChhHHHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCC-----------CCcEEEEEcCCh
Q 000559 239 SCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGA-----------PGSKIIVTTRDE 299 (1422)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~ilvTtR~~ 299 (1422)
......... ......-....-.|+||+|..-.......+...+..+. ...+||+||...
T Consensus 210 ~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 210 KGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 110000000 00000112224458999997665555555655443321 245888888654
No 421
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=66.81 E-value=8.6 Score=37.59 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=26.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS 238 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 238 (1422)
|.||||+|+.++++.... .| +.-.+++++++..+.+
T Consensus 10 GsG~TTva~~lAe~~gl~------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 10 GSGKTTVARELAEHLGLK------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred CCChhHHHHHHHHHhCCc------ee------eccHHHHHHHHHcCCC
Confidence 999999999999986532 11 2336788888888765
No 422
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=66.48 E-value=6.3 Score=47.61 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=30.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILE 233 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~ 233 (1422)
|+|||+|+.++++... -|.++++-+++.- .+.+++.++-+
T Consensus 237 G~GKTvl~~~iak~a~---adivVyvg~GERg~E~~e~l~ef~~ 277 (586)
T PRK04192 237 GSGKTVTQHQLAKWAD---ADIVIYVGCGERGNEMTEVLEEFPE 277 (586)
T ss_pred CCCHHHHHHHHHhcCC---CCEEEEEEcCcChHHHHHHHHHHHh
Confidence 9999999999988643 4678899888764 45666666554
No 423
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=66.45 E-value=6.2 Score=41.33 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=19.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWV 216 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv 216 (1422)
|.||||.++.++...+.+++ .++|.
T Consensus 13 GaGKTT~~~~L~~~l~~~g~-~v~~t 37 (208)
T COG0125 13 GAGKTTQAELLKERLEERGI-KVVLT 37 (208)
T ss_pred CCCHHHHHHHHHHHHHHcCC-eEEEE
Confidence 99999999999998764446 34444
No 424
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=66.40 E-value=7.4 Score=40.84 Aligned_cols=102 Identities=11% Similarity=0.123 Sum_probs=51.6
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHH-HHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDIL-RISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
|.||||++..+..... ......+++ +..+.... .-...+..+- ....+.......++..++...=.+++|.+.
T Consensus 11 GSGKTTll~~ll~~~~-~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~~pd~ii~gEir 84 (198)
T cd01131 11 GSGKSTTLAAMIDYIN-KNKTHHILT-IEDPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQDPDVILVGEMR 84 (198)
T ss_pred CCCHHHHHHHHHHHhh-hcCCcEEEE-EcCCccccccCccceeeec----ccCCCccCHHHHHHHHhcCCcCEEEEcCCC
Confidence 9999999998776532 113333443 22221100 0000011110 011122344556777787777899999996
Q ss_pred CCCccchhhhhccCCCCCCCcEEEEEcCChHHHH
Q 000559 270 SKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVAL 303 (1422)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 303 (1422)
+. +.+....... ..|-.++.|+-...++.
T Consensus 85 d~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 85 DL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 54 4444333322 24556777776665543
No 425
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=66.10 E-value=13 Score=39.91 Aligned_cols=51 Identities=18% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHHHHhccceeEEEeccCCC----CCccchhhhhccCCCCCCCcEEEEEcCChHHHH
Q 000559 251 KLKQEVAGRKFLIVLDDVWS----KNYGLWEVLKSPFMAGAPGSKIIVTTRDENVAL 303 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~----~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 303 (1422)
.+.+.|..+.=|+|||.=-. .......++...+... |..||++|-+-....
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~ 203 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhH
Confidence 57788889999999997422 2222333344444333 888999998866543
No 426
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=65.87 E-value=21 Score=35.40 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=13.9
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|.||||+|+.+.....
T Consensus 9 GsGKSTla~~L~~~l~ 24 (149)
T cd02027 9 GSGKSTIARALEEKLF 24 (149)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988653
No 427
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=65.30 E-value=2.7 Score=39.63 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=13.3
Q ss_pred cccHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDL 205 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~ 205 (1422)
|.||||+++.++...
T Consensus 25 GaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 25 GAGKTTFVRGLARAL 39 (123)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 999999999998754
No 428
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=65.22 E-value=2.2e+02 Score=34.98 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCCCCCCcEEEEEcCChHHHHhhCCCCceeeCCC
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLEL 316 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~ 316 (1422)
.+...+-.+.=+||||.=-+. +.+..+.+..++... .| .||+.|-++........ .++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va~--~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVAT--RIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhcc--eEEEEcC
Confidence 445555678889999976332 224445555555544 34 58888888887776653 5555553
No 429
>PRK06820 type III secretion system ATPase; Validated
Probab=65.20 E-value=14 Score=43.46 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=38.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCC-------CCCCCChhH-----HHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLS-------SCDFKDLNP-----VQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~-----~~~~l~~~l- 256 (1422)
|+|||||++.++.... -+.++.+-+++.. .+.++.++....=... ..+...... ....+.+++
T Consensus 173 G~GKStLl~~I~~~~~---~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfr 249 (440)
T PRK06820 173 GVGKSTLLGMLCADSA---ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEYFR 249 (440)
T ss_pred CCChHHHHHHHhccCC---CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987532 3344555566552 2333333222110000 001111111 112344444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 250 d~G~~VLl~~Dsl 262 (440)
T PRK06820 250 DRGKKVLLMADSL 262 (440)
T ss_pred HcCCCEEEEccch
Confidence 489999999999
No 430
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=64.98 E-value=4.1 Score=39.73 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=17.6
Q ss_pred cccHHHHHHHHhcccccccCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFN 211 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~ 211 (1422)
|+||||+++.+++..+...|.
T Consensus 15 GvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 15 GVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred CccHHHHHHHHHHHHHhcCce
Confidence 999999999999887655464
No 431
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=64.96 E-value=14 Score=37.45 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=40.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhcc--ceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAG--RKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv 268 (1422)
|.|||++|.++... ....++++.-.+.++. ++.+.|....... .......+....+.+.+.. +.-.+++|.+
T Consensus 9 ~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~~~VLIDcl 82 (169)
T cd00544 9 RSGKSRFAERLAAE----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELDPGDVVLIDCL 82 (169)
T ss_pred CCCHHHHHHHHHHh----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCCCEEEEEcH
Confidence 89999999998764 1235677776666654 3444433322212 2223333333445555532 2337899986
No 432
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=64.90 E-value=15 Score=38.65 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=31.6
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCCC-CCCcEEEEEcCChHHHHh
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMAG-APGSKIIVTTRDENVALT 304 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~-~~gs~ilvTtR~~~v~~~ 304 (1422)
.+.+.+..++=++++|+.-.. +....+.+...+... ..|..||++|.+...+..
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 455666677889999997443 112233333333221 236678888888776653
No 433
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=64.79 E-value=1.1e+02 Score=39.05 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=30.1
Q ss_pred HHHHHhccceeEEEeccCCCCCccch-hhhhccCCC-CCCCcEEEEEcCChHHH
Q 000559 251 KLKQEVAGRKFLIVLDDVWSKNYGLW-EVLKSPFMA-GAPGSKIIVTTRDENVA 302 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~~~~~~-~~l~~~~~~-~~~gs~ilvTtR~~~v~ 302 (1422)
.+.+.+-.++-+|+||..-+.-+..- ..+...+.. ....+.|+||=|..-+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~ 672 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh
Confidence 36677778899999999855411111 223333322 22356777777766553
No 434
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.72 E-value=13 Score=42.57 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=43.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhc-cceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSSCDFKDLNPVQVKLKQEVA-GRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv 268 (1422)
|+||||++..++.....++ ..+.+|++.... ...+-++..++.++.+.....+..++...+.+.-. +..=+|++|-.
T Consensus 216 GvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 216 GVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred CCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 9999999988886543222 346677765322 22344555566555443333455554444433221 33467788877
Q ss_pred CC
Q 000559 269 WS 270 (1422)
Q Consensus 269 ~~ 270 (1422)
-.
T Consensus 295 Gr 296 (407)
T PRK12726 295 GR 296 (407)
T ss_pred CC
Confidence 44
No 435
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=64.51 E-value=14 Score=41.93 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=15.3
Q ss_pred ccc-cccHHHHHHHHhcccc
Q 000559 188 VNF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~ 206 (1422)
.|+ |.||||+|+.+.+...
T Consensus 5 ~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 5 CGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 355 9999999999987654
No 436
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=64.36 E-value=5.5 Score=49.48 Aligned_cols=75 Identities=11% Similarity=-0.008 Sum_probs=50.0
Q ss_pred CCcccccchhHHHHHHHhcCCCCCCCcccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDTNNDDVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~~~~~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
-.+++|.++.++.+...+.... ..-.+|- |.||||+|+.+++......++..+|..-+ ..+...+++.++.+++.
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~~-~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np-~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQRR-HVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP-EDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhCC-eEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC-CcchHHHHHHHHHhcCH
Confidence 3468999988888887776542 1111222 99999999999987532226778887553 33566777777766653
No 437
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=64.18 E-value=6.6 Score=40.63 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=14.1
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|.||||+|+.++....
T Consensus 9 GsGKst~a~~la~~~~ 24 (183)
T TIGR01359 9 GSGKGTQCAKIVENFG 24 (183)
T ss_pred CCCHHHHHHHHHHHcC
Confidence 9999999999988653
No 438
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=64.06 E-value=18 Score=38.99 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=21.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF 222 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~ 222 (1422)
|.||||+|.+++...- ..-..++|++.....
T Consensus 30 G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 30 GTGKTIFCLHFAYKGL-RDGDPVIYVTTEESR 60 (229)
T ss_pred CCChHHHHHHHHHHHH-hcCCeEEEEEccCCH
Confidence 9999999998765432 223467899875543
No 439
>PRK15453 phosphoribulokinase; Provisional
Probab=63.90 E-value=60 Score=35.69 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=36.1
Q ss_pred Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcCc--ccHHHHHHHHH--HHhc--CCC--CCCCChhHHHHHHH
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD--FDILRISKAIL--ESIT--LSS--CDFKDLNPVQVKLK 253 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~--~~l~--~~~--~~~~~~~~~~~~l~ 253 (1422)
.+|+| |.||||+|+.+++..+.. =..++.++...- ++..+.-..+. +.-+ -.. .+..+.+.+.+.++
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~-~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l~ 84 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRE-NINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLFR 84 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHHH
Confidence 34566 999999999988643211 112344443321 23222222221 1111 122 45667777777777
Q ss_pred HHhc
Q 000559 254 QEVA 257 (1422)
Q Consensus 254 ~~l~ 257 (1422)
...+
T Consensus 85 ~l~~ 88 (290)
T PRK15453 85 EYGE 88 (290)
T ss_pred HHhc
Confidence 7654
No 440
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=63.90 E-value=60 Score=36.04 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=37.0
Q ss_pred cceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCC-hHHHHhhCCCCceeeCCCC
Q 000559 258 GRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRD-ENVALTLGCPGECHNLELL 317 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~~~~~~~~l~~l 317 (1422)
+++=++|+|++.....+.+..+...+..-..++.+|++|.+ ..+.....+.-..+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 45568899999877777888877776554456666666665 4443333322245555544
No 441
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=63.89 E-value=16 Score=42.87 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=55.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCCC-------CCCCC-----hhHHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLSS-------CDFKD-----LNPVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~-----~~~~~~~l~~~l- 256 (1422)
|.|||||++.++...+. ...++.. +.+ ...+.+..++.+..-+... .+... ....+..+.+++
T Consensus 166 G~GKTtLl~~Ia~~~~~--~~gvI~~-iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr 242 (432)
T PRK06793 166 GVGKSTLLGMIAKNAKA--DINVISL-VGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFR 242 (432)
T ss_pred CCChHHHHHHHhccCCC--CeEEEEe-CCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886431 2223332 333 3566666665555432111 11111 111122344444
Q ss_pred -ccceeEEEeccCCCCCccchhhhhcc---CCCCCCCcEEEEEcCChHHHHhh
Q 000559 257 -AGRKFLIVLDDVWSKNYGLWEVLKSP---FMAGAPGSKIIVTTRDENVALTL 305 (1422)
Q Consensus 257 -~~k~~LlVlDdv~~~~~~~~~~l~~~---~~~~~~gs~ilvTtR~~~v~~~~ 305 (1422)
+++++|+|+||+-.-. +...++... .|. .|--..+.|....+....
T Consensus 243 ~~G~~VLlilDslTr~a-~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 243 DQGNNVLLMMDSVTRFA-DARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HcCCcEEEEecchHHHH-HHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 4789999999994321 222333222 222 255555655555555544
No 442
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=63.73 E-value=14 Score=43.73 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=39.6
Q ss_pred cccHHHHHHHHhcccc-cccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccC
Q 000559 191 RVGKTTLARLVYNDLA-VEDFNSRAWVCVSDDF-DILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDV 268 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~-~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1422)
|+||||++..++.... ..+-..+..|+..... ...+-++...+.++.+.....+..+....+.+ +. ..=+||+|..
T Consensus 231 GvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~-~~DlVlIDt~ 308 (424)
T PRK05703 231 GVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR-DCDVILIDTA 308 (424)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-CCCEEEEeCC
Confidence 9999998888776543 2223356777654321 11222333344444333233344444444443 23 3457888866
No 443
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=63.49 E-value=9.5 Score=42.52 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=49.9
Q ss_pred CCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCCC--------CCC----CChhH
Q 000559 185 NDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLSS--------CDF----KDLNP 247 (1422)
Q Consensus 185 ~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~----~~~~~ 247 (1422)
.+.+|+ |||||-+.+.+.++....+=...+|.-+++.. .-.++..++.+.--.+. .+. ....-
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVal 226 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVAL 226 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehh
Confidence 355666 99999999999998653223456788777643 34566666655422111 000 01111
Q ss_pred HHHHHHHHh---ccceeEEEeccCCC
Q 000559 248 VQVKLKQEV---AGRKFLIVLDDVWS 270 (1422)
Q Consensus 248 ~~~~l~~~l---~~k~~LlVlDdv~~ 270 (1422)
..-.+.+++ .++.+|+.+||+..
T Consensus 227 tGlT~AEyfRD~~gqdVLlFIDNIfR 252 (468)
T COG0055 227 TGLTMAEYFRDEEGQDVLLFIDNIFR 252 (468)
T ss_pred hhhhHHHHhhcccCCeEEEEehhhhH
Confidence 111233344 36799999999965
No 444
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=63.14 E-value=17 Score=43.49 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=42.4
Q ss_pred cccHHHHH-HHHhcccccccCCc-EEEEEEcCcc-cHHHHHHHHHHHhcCCCC-----CCCC--hhH-----HHHHHHHH
Q 000559 191 RVGKTTLA-RLVYNDLAVEDFNS-RAWVCVSDDF-DILRISKAILESITLSSC-----DFKD--LNP-----VQVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa-~~v~~~~~~~~F~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~--~~~-----~~~~l~~~ 255 (1422)
|+|||||| ..+.++. .-+. ++++-+++.. .+.++.+.+...=..... ..++ ... ....+.++
T Consensus 172 g~GKt~Lal~~i~~~~---~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiAEy 248 (502)
T PRK13343 172 QTGKTAIAIDAIINQK---DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIAEY 248 (502)
T ss_pred CCCccHHHHHHHHhhc---CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHHHH
Confidence 99999996 6666542 2444 3778787764 455666555443211110 1111 111 11124444
Q ss_pred h--ccceeEEEeccCC
Q 000559 256 V--AGRKFLIVLDDVW 269 (1422)
Q Consensus 256 l--~~k~~LlVlDdv~ 269 (1422)
+ ++|++|+|+||+-
T Consensus 249 frd~G~~VLlv~DdlT 264 (502)
T PRK13343 249 FRDQGQDALIVYDDLS 264 (502)
T ss_pred HHhCCCCEEEEecchH
Confidence 4 5899999999993
No 445
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=62.86 E-value=3.5 Score=38.89 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=13.2
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|+||||+|+.++....
T Consensus 9 G~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 9 GVGKTTLAKALARSLG 24 (131)
T ss_dssp -HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHcC
Confidence 9999999999998743
No 446
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=62.84 E-value=11 Score=43.42 Aligned_cols=64 Identities=20% Similarity=0.063 Sum_probs=42.3
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc-cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHH
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF-RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKA 230 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i-GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 230 (1422)
..++|+++....+...+..... .-..|. |+|||+||+.++.... ...++|.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~~-vll~G~PG~gKT~la~~lA~~l~----~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGGH-VLLEGPPGVGKTLLARALARALG----LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCCC-EEEECCCCccHHHHHHHHHHHhC----CCeEEEecCCCCCHHHhcCc
Confidence 3488988888888777765422 122344 9999999999998754 23456666666555554443
No 447
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=62.83 E-value=33 Score=35.39 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=31.0
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHh
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~ 304 (1422)
.+.+.+-.++-++++|+--.. +....+.+...+.. ...|..||++|.+......
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 355556677889999987443 22223333333322 1236788888888654443
No 448
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=62.78 E-value=9.8 Score=42.03 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=30.8
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITL 237 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 237 (1422)
|+|||++|.+++.+.-...-..++|++...+ ..++...++.....
T Consensus 29 g~GKT~~~l~ia~~~a~~~~~~vly~SlEm~--~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 29 GVGKTAFALQIALNAALNGGYPVLYFSLEMS--EEELAARLLARLSG 73 (259)
T ss_dssp TSSHHHHHHHHHHHHHHTTSSEEEEEESSS---HHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHhhc
Confidence 9999999999998765443356788876543 44566666665543
No 449
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.67 E-value=5.1 Score=25.84 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=10.2
Q ss_pred CCCcceeeecCcccccc
Q 000559 590 LTHLRYLNFSGTRICHI 606 (1422)
Q Consensus 590 L~~L~~L~L~~n~i~~l 606 (1422)
+.+|++|+|++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35566666666666544
No 450
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.52 E-value=39 Score=35.51 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccceeEEEeccCCCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHhhCCC
Q 000559 247 PVQVKLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALTLGCP 308 (1422)
Q Consensus 247 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~~~~~ 308 (1422)
....++.+.+--++-+.|||..++. +.+....+...+.. ...|+.+++.|-.+.++.....+
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 3344566666667789999998765 22233333222211 23477888889999999887654
No 451
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=62.41 E-value=12 Score=44.24 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=38.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHh--
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEV-- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l-- 256 (1422)
|.|||||++.+...... -..++++.-.+..++.++..+.+..-... ..+..... .....+.+++
T Consensus 168 G~GKStLl~~I~~~~~~--~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~ 245 (438)
T PRK07721 168 GVGKSTLMGMIARNTSA--DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRD 245 (438)
T ss_pred CCCHHHHHHHHhcccCC--CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998876432 22344433223334554443322211000 01111111 1122344444
Q ss_pred ccceeEEEeccC
Q 000559 257 AGRKFLIVLDDV 268 (1422)
Q Consensus 257 ~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 246 ~g~~Vll~~Dsl 257 (438)
T PRK07721 246 QGLNVMLMMDSV 257 (438)
T ss_pred CCCcEEEEEeCh
Confidence 489999999998
No 452
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=62.24 E-value=62 Score=34.05 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=31.8
Q ss_pred HHHHHhccceeEEEeccCCCC-Cccchhhhhcc-CC-CCCCCcEEEEEcCChHHHHh
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSP-FM-AGAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~-~~-~~~~gs~ilvTtR~~~v~~~ 304 (1422)
.+.+.+..++=++++|+--.. +....+.+... +. ....|..||++|.+......
T Consensus 137 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 137 SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 466667788889999987443 12222334331 22 12236778888887766554
No 453
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=62.17 E-value=7.2 Score=47.29 Aligned_cols=98 Identities=21% Similarity=0.259 Sum_probs=57.5
Q ss_pred CCcccccchhHHHHHHHhcCCC----CCCCcccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHD----TNNDDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAIL 232 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~----~~~~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 232 (1422)
+..=+|+++-+++|++.+.-.. ..++++.. |||||.+|+.|+.-.. ++| +-++|+.-.|+.+|-..-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn-RkF---fRfSvGG~tDvAeIkGHR- 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN-RKF---FRFSVGGMTDVAEIKGHR- 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC-Cce---EEEeccccccHHhhcccc-
Confidence 4456899999999999986532 22234333 9999999999998754 333 235666666655442110
Q ss_pred HHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCC
Q 000559 233 ESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVW 269 (1422)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1422)
......-...+++.++.. +...=|+.+|.|+
T Consensus 485 -----RTYVGAMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 485 -----RTYVGAMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred -----eeeeccCChHHHHHHHhh-CCCCceEEeehhh
Confidence 001111223333333332 3445688889984
No 454
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.08 E-value=12 Score=37.48 Aligned_cols=110 Identities=19% Similarity=0.154 Sum_probs=53.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|.|||||++.++.... ...+.+++.-..-.... ..+....+.... +...-+...-.+.+.+....=++++|+.-.
T Consensus 35 GsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~-qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~ 109 (157)
T cd00267 35 GSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLP--LEELRRRIGYVP-QLSGGQRQRVALARALLLNPDLLLLDEPTS 109 (157)
T ss_pred CCCHHHHHHHHhCCCC--CCccEEEECCEEcccCC--HHHHHhceEEEe-eCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999999999987643 14444554321111100 011111111100 011112222345566666788999999854
Q ss_pred C-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHhh
Q 000559 271 K-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALTL 305 (1422)
Q Consensus 271 ~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~~ 305 (1422)
. +......+...+.. ...+..++++|.+.......
T Consensus 110 ~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 110 GLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 3 11222333332221 11256788888887766543
No 455
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=61.76 E-value=13 Score=45.38 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=32.5
Q ss_pred CcccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~ 205 (1422)
..++|....+.++.+.+..-......|-| |.||+++|+.+++.-
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 35899999888888887543333334444 999999999998753
No 456
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=61.71 E-value=21 Score=41.93 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=39.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc-cHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF-DILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l- 256 (1422)
|.|||||++.+...... +..+.+-+++.. .+.++..+.+.+-+.. ..+..... .....+.+++
T Consensus 147 G~GKTtLl~~i~~~~~~---~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr 223 (413)
T TIGR03497 147 GVGKSTLLGMIARNAKA---DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFR 223 (413)
T ss_pred CCCHHHHHHHHhCCCCC---CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876432 222223344433 4555555444331111 01111111 1122344444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 224 ~~G~~Vll~~Dsl 236 (413)
T TIGR03497 224 DQGKDVLLMMDSV 236 (413)
T ss_pred HCCCCEEEEEcCc
Confidence 488999999999
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=61.64 E-value=8.2 Score=43.80 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHhccceeEEEeccCCCCCccchhhhhccCCCCCCCcEEEEEcCChHH
Q 000559 248 VQVKLKQEVAGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENV 301 (1422)
Q Consensus 248 ~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v 301 (1422)
..+.++..++...=.+|+|.+... +.|+.+.. ...+..| ++.|+-...+
T Consensus 207 ~~~~l~~~Lr~~pd~ii~gE~r~~--e~~~~l~a-~~~g~~~--~i~T~Ha~~~ 255 (308)
T TIGR02788 207 PKDLLQSCLRMRPDRIILGELRGD--EAFDFIRA-VNTGHPG--SITTLHAGSP 255 (308)
T ss_pred HHHHHHHHhcCCCCeEEEeccCCH--HHHHHHHH-HhcCCCe--EEEEEeCCCH
Confidence 445667778888888999999764 55554333 3223222 4666654443
No 458
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=61.48 E-value=7.8 Score=40.74 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=30.1
Q ss_pred cceeEEEeccCCCCC-ccc----hhhhhccCCCCCCCcEEEEEcCChHHHHhhCC
Q 000559 258 GRKFLIVLDDVWSKN-YGL----WEVLKSPFMAGAPGSKIIVTTRDENVALTLGC 307 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~-~~~----~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~ 307 (1422)
.++-|+++|..-... ..+ ...+...+.. .|+.+|++|-+.+++..+..
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 568899999974431 111 1122222322 37899999999998876643
No 459
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=61.36 E-value=65 Score=39.47 Aligned_cols=176 Identities=20% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCcccccchhHHH---HHHHhcCCCC----CC---Cccc-c---cccHHHHHHHHhcccccccCCcEEEEEEcCcccHH
Q 000559 160 TEPAVYGRDGDKAK---VLDMVLSHDT----NN---DDVN-F---RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDIL 225 (1422)
Q Consensus 160 ~~~~~vGr~~~~~~---i~~~l~~~~~----~~---~~v~-i---GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~ 225 (1422)
.-.++-|.++.+++ +++.|.++.. +. +.|. + |.|||.||++++....+..|. .|..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~------iSGS---- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS------ISGS---- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee------ccch----
Confidence 34567788766555 5555655431 11 1111 1 999999999999998765442 1111
Q ss_pred HHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCCCC----------ccchhh----hhccCCCCC--CC
Q 000559 226 RISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWSKN----------YGLWEV----LKSPFMAGA--PG 289 (1422)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~~~~~~--~g 289 (1422)
+..+.+-+. ..........+..+.-+++|++|.++... -+++++ +..-...++ .|
T Consensus 218 ----~FVemfVGv-----GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 218 ----DFVEMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred ----hhhhhhcCC-----CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 111111100 01111122233334457899998875421 123333 222222222 34
Q ss_pred cEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCchH
Q 000559 290 SKIIVTTRDENVALTL----GCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLA 362 (1422)
Q Consensus 290 s~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 362 (1422)
-.|+..|-..+|.+.. +-.+..+.++.-+-..-.+.++-++-...-. ..- ++ ..|++.+-|.-.|
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~V---dl----~~iAr~tpGfsGA 357 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDV---DL----KKIARGTPGFSGA 357 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcC---CH----HHHhhhCCCcccc
Confidence 3444456556555322 2223556666656566666666555222111 100 22 2377777776655
No 460
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=61.09 E-value=32 Score=37.51 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=27.5
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILES 234 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 234 (1422)
|.|||++|.+++.+.-...=..++|++...+ ..++...++..
T Consensus 23 G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~--~~~~~~r~~~~ 64 (242)
T cd00984 23 SMGKTAFALNIAENIAKKQGKPVLFFSLEMS--KEQLLQRLLAS 64 (242)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEEEeCCCC--HHHHHHHHHHH
Confidence 9999999998876654332235788887664 34555555433
No 461
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=60.90 E-value=15 Score=47.14 Aligned_cols=112 Identities=10% Similarity=0.102 Sum_probs=56.0
Q ss_pred cceeEEEeccCCCC-Cccchhhh----hccCCCCCCCcEEEEEcCChHHHHhhCCCCceeeCCC-CChhhHHHHHHHhhh
Q 000559 258 GRKFLIVLDDVWSK-NYGLWEVL----KSPFMAGAPGSKIIVTTRDENVALTLGCPGECHNLEL-LSDNDCWSVFKKHAF 331 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~-~~~~~~~l----~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~~~l~~-l~~~~~~~lf~~~a~ 331 (1422)
.++-|+++|..-.. +..+...+ ...+. ..|+.+|+||-...+.........+..... ++.+ ... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~-~l~-p~Ykl- 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEE-TLS-PTYKL- 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCC-CCc-eEEEE-
Confidence 47899999998654 22222222 22222 257899999999887654322212211100 1111 000 00000
Q ss_pred cCCCccccccccchHHHHHHHHHHhCCCchHHHHHHHHHhcCCChHHHHHHHh
Q 000559 332 ASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDILN 384 (1422)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~~w~~~l~ 384 (1422)
.... .-...|-+|++++ |+|-.+.--|..+.+.. ..++.++++
T Consensus 476 ~~G~--------~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~-~~~~~~li~ 518 (771)
T TIGR01069 476 LKGI--------PGESYAFEIAQRY-GIPHFIIEQAKTFYGEF-KEEINVLIE 518 (771)
T ss_pred CCCC--------CCCcHHHHHHHHh-CcCHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 0000 1123567788777 78888888887776542 234444443
No 462
>PTZ00494 tuzin-like protein; Provisional
Probab=60.74 E-value=47 Score=38.45 Aligned_cols=162 Identities=10% Similarity=0.090 Sum_probs=89.6
Q ss_pred CCCCcccccchhHHHHHHHhcCCCCCC-Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHH
Q 000559 159 ATEPAVYGRDGDKAKVLDMVLSHDTNN-DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILE 233 (1422)
Q Consensus 159 ~~~~~~vGr~~~~~~i~~~l~~~~~~~-~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 233 (1422)
.....+|.|+++-..+.+.|..-+... +++.+ |.||++|.+.......+ ..++|++.... +-++.|.+
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~----paV~VDVRg~E---DtLrsVVK 440 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV----ALVHVDVGGTE---DTLRSVVR 440 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC----CeEEEEecCCc---chHHHHHH
Confidence 345678999999888888887655444 33333 99999999988877654 46778776654 35677888
Q ss_pred HhcCCCCCC-CC-hh---HHHHHHHHHhccceeEEEeccCCCCC-ccchhhhhccCCCCCCCcEEEEEcCChHHHHhh--
Q 000559 234 SITLSSCDF-KD-LN---PVQVKLKQEVAGRKFLIVLDDVWSKN-YGLWEVLKSPFMAGAPGSKIIVTTRDENVALTL-- 305 (1422)
Q Consensus 234 ~l~~~~~~~-~~-~~---~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~-- 305 (1422)
.++.+.-+. .| ++ +.-..-+....++.=+||+-=-...+ .-.+.+.. .+.....-|.|++----+.+-...
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhcc
Confidence 888664332 12 11 21222222234555566653111000 01111111 122223457777754433332111
Q ss_pred CCCCceeeCCCCChhhHHHHHHH
Q 000559 306 GCPGECHNLELLSDNDCWSVFKK 328 (1422)
Q Consensus 306 ~~~~~~~~l~~l~~~~~~~lf~~ 328 (1422)
-..-..|.+..++.++|.+.-.+
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH 542 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEH 542 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhc
Confidence 11125678889999888765544
No 463
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=60.67 E-value=55 Score=34.55 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHhccceeEEEeccCCCC-CccchhhhhccCCCCCCCcEEEEEcCChHHHHh
Q 000559 252 LKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMAGAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 252 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~ 304 (1422)
+.+.+..++=++++|+-... +....+.+...+.....|..||++|.+...+..
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44555567778999987543 222233333333222236678888887766543
No 464
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=60.49 E-value=6.7 Score=41.76 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=27.0
Q ss_pred cceeEEEeccCCCCC-ccc----hhhhhccCCCCCCCcEEEEEcCChHHHHhh
Q 000559 258 GRKFLIVLDDVWSKN-YGL----WEVLKSPFMAGAPGSKIIVTTRDENVALTL 305 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~-~~~----~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~ 305 (1422)
.++-++++|..-... ..+ ...+...+... .++.+|+||.+.++....
T Consensus 108 ~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~ 159 (216)
T cd03284 108 TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELE 159 (216)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHh
Confidence 578899999972210 011 12233333222 367899999987776544
No 465
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=60.41 E-value=5.5 Score=45.30 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=29.6
Q ss_pred CCcccccchhHHHHHHHhcCCCC-CCCcccc-cccHHHHHHHHhcc
Q 000559 161 EPAVYGRDGDKAKVLDMVLSHDT-NNDDVNF-RVGKTTLARLVYND 204 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~~~-~~~~v~i-GvGKTtLa~~v~~~ 204 (1422)
-..++|.++.++.+.-.+..... ..-..|. |.||||+|+.+..-
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~l 52 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAAL 52 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 34689999998887765543321 1112234 99999999998653
No 466
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=60.34 E-value=27 Score=38.62 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=38.4
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccH--HHHHHHHHHHhcCCC---CCCCChhHH-HHHHHHHhccceeEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDI--LRISKAILESITLSS---CDFKDLNPV-QVKLKQEVAGRKFLIV 264 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~~-~~~l~~~l~~k~~LlV 264 (1422)
|+||||++..++.... +.-..+.+|++.. +.. .+-++..++..+.+. ....+.... ...++....+..=+++
T Consensus 82 G~GKTTt~akLA~~l~-~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~Vi 159 (272)
T TIGR00064 82 GVGKTTTIAKLANKLK-KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVL 159 (272)
T ss_pred CCcHHHHHHHHHHHHH-hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 9999999988886653 2223466676543 222 222333444444221 111222222 2334333334445778
Q ss_pred eccCC
Q 000559 265 LDDVW 269 (1422)
Q Consensus 265 lDdv~ 269 (1422)
+|-.-
T Consensus 160 IDT~G 164 (272)
T TIGR00064 160 IDTAG 164 (272)
T ss_pred EeCCC
Confidence 88763
No 467
>PRK11823 DNA repair protein RadA; Provisional
Probab=60.25 E-value=23 Score=42.43 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=22.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDF 222 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~ 222 (1422)
|+|||||+.+++.... +.-..++|++..+.+
T Consensus 90 G~GKTtL~lq~a~~~a-~~g~~vlYvs~Ees~ 120 (446)
T PRK11823 90 GIGKSTLLLQVAARLA-AAGGKVLYVSGEESA 120 (446)
T ss_pred CCCHHHHHHHHHHHHH-hcCCeEEEEEccccH
Confidence 9999999999987643 222357888876543
No 468
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=60.10 E-value=7.7 Score=49.38 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=35.7
Q ss_pred Cccccc-chhHHHHHHHhcCCCCCCC-cccc-cccHHHHHHHHhcccc
Q 000559 162 PAVYGR-DGDKAKVLDMVLSHDTNND-DVNF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 162 ~~~vGr-~~~~~~i~~~l~~~~~~~~-~v~i-GvGKTtLa~~v~~~~~ 206 (1422)
..++|| +++..++++.|.....+.. .||. |+|||++|.-+++...
T Consensus 186 dPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~ 233 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIA 233 (898)
T ss_pred CCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhh
Confidence 357798 9999999999987665332 3555 9999999999988765
No 469
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=59.99 E-value=14 Score=42.61 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=47.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhccceeEEEeccCCC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKFLIVLDDVWS 270 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 270 (1422)
|.|||.|+-.+|+...++. . .....-+...++-+.+..-...... ...+.+.+.++..||.||...=
T Consensus 72 G~GKT~Lmd~f~~~lp~~~-k--------~R~HFh~Fm~~vh~~l~~~~~~~~~----l~~va~~l~~~~~lLcfDEF~V 138 (362)
T PF03969_consen 72 GRGKTMLMDLFYDSLPIKR-K--------RRVHFHEFMLDVHSRLHQLRGQDDP----LPQVADELAKESRLLCFDEFQV 138 (362)
T ss_pred CCchhHHHHHHHHhCCccc-c--------ccccccHHHHHHHHHHHHHhCCCcc----HHHHHHHHHhcCCEEEEeeeec
Confidence 9999999999998765421 0 0011112333333333222112222 3344556677788999998743
Q ss_pred CCccchhhhhccCCC-CCCCcEEEEEcCChHH
Q 000559 271 KNYGLWEVLKSPFMA-GAPGSKIIVTTRDENV 301 (1422)
Q Consensus 271 ~~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v 301 (1422)
.+..+---+...+.. ...| -|||+|.+...
T Consensus 139 ~DiaDAmil~rLf~~l~~~g-vvlVaTSN~~P 169 (362)
T PF03969_consen 139 TDIADAMILKRLFEALFKRG-VVLVATSNRPP 169 (362)
T ss_pred cchhHHHHHHHHHHHHHHCC-CEEEecCCCCh
Confidence 322222222222221 1234 46666655433
No 470
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=59.96 E-value=23 Score=42.53 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=21.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD 221 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~ 221 (1422)
|+|||||+.+++.... +.-..++||+..+.
T Consensus 104 GsGKTTL~lq~a~~~a-~~g~kvlYvs~EEs 133 (454)
T TIGR00416 104 GIGKSTLLLQVACQLA-KNQMKVLYVSGEES 133 (454)
T ss_pred CCCHHHHHHHHHHHHH-hcCCcEEEEECcCC
Confidence 9999999999876543 11235788876554
No 471
>PRK05973 replicative DNA helicase; Provisional
Probab=59.80 E-value=15 Score=39.46 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=21.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD 221 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~ 221 (1422)
|+|||++|.+++...- ..=..+++++...+
T Consensus 74 G~GKT~lalqfa~~~a-~~Ge~vlyfSlEes 103 (237)
T PRK05973 74 GHGKTLLGLELAVEAM-KSGRTGVFFTLEYT 103 (237)
T ss_pred CCCHHHHHHHHHHHHH-hcCCeEEEEEEeCC
Confidence 9999999998876543 22345778877665
No 472
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=59.53 E-value=4.9 Score=33.54 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.5
Q ss_pred cccHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDL 205 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~ 205 (1422)
|.||||+|+.+.+..
T Consensus 9 gsGKst~~~~l~~~l 23 (69)
T cd02019 9 GSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998873
No 473
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=59.49 E-value=8.4 Score=43.92 Aligned_cols=43 Identities=23% Similarity=0.181 Sum_probs=30.9
Q ss_pred CcccccchhHHHHHHHhcCCCCCC-Ccccc-cccHHHHHHHHhcc
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNN-DDVNF-RVGKTTLARLVYND 204 (1422)
Q Consensus 162 ~~~vGr~~~~~~i~~~l~~~~~~~-~~v~i-GvGKTtLa~~v~~~ 204 (1422)
..+||.++.+..++-.+.++..+. -+.|. |.||||+++.+..-
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999988877777643321 12233 99999999999743
No 474
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=59.49 E-value=63 Score=35.22 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=35.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc--ccHHHHHHHHHHHh----cCCC--CCCCChhHHHHHHHHHhccc
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD--FDILRISKAILESI----TLSS--CDFKDLNPVQVKLKQEVAGR 259 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~~~l~~k 259 (1422)
|.||||+|+.+.+..+..+ ..++.++...- .+-...-..+.... .-.. .++.+.+.+.+.++..-+++
T Consensus 9 GSGKTTv~~~l~~~l~~~g-~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L~~g~ 84 (277)
T cd02029 9 GAGTTTVKRAFEHIFAREG-IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTYGETG 84 (277)
T ss_pred CCCHHHHHHHHHHHHHhcC-CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHHHcCC
Confidence 9999999998887543211 12344443221 12222222222221 2222 45667777777777776654
No 475
>PRK00279 adk adenylate kinase; Reviewed
Probab=59.30 E-value=9.4 Score=40.72 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.9
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|.||||+|+.++....
T Consensus 10 GsGKsT~a~~la~~~~ 25 (215)
T PRK00279 10 GAGKGTQAKFIAEKYG 25 (215)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999987644
No 476
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=59.26 E-value=5.9 Score=38.67 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=21.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD 220 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~ 220 (1422)
|.|||||++.+.+....+++...+..+...
T Consensus 10 ~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 10 NSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp TSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 899999999999987644577666776655
No 477
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=59.06 E-value=38 Score=37.04 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=29.6
Q ss_pred HHHHhccceeEEEeccCCCCC-ccchhhhhccCCC-CCCCcEEEEEcCChHHHHh
Q 000559 252 LKQEVAGRKFLIVLDDVWSKN-YGLWEVLKSPFMA-GAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 252 l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~ 304 (1422)
+.+.+-.++-+++||+--..- ...-+.+...+.. ...|..||++|.+...+..
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~ 210 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDY 210 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 455556677899999874431 1111222222211 1236678899988776654
No 478
>PRK00625 shikimate kinase; Provisional
Probab=58.91 E-value=4.5 Score=41.20 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.0
Q ss_pred ccc-cccHHHHHHHHhcccc
Q 000559 188 VNF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 188 v~i-GvGKTtLa~~v~~~~~ 206 (1422)
+|+ |+||||+|+.+++...
T Consensus 6 iG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 6 CGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 455 9999999999988754
No 479
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=58.89 E-value=13 Score=43.78 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=37.6
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l- 256 (1422)
|+|||||++.++..... +.++...+.. ..++.++.+++...=... ..+..... .....+.+++
T Consensus 185 G~GKTTLL~~Ia~~~~~---d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEyfr 261 (455)
T PRK07960 185 GVGKSVLLGMMARYTQA---DVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR 261 (455)
T ss_pred CCCccHHHHHHhCCCCC---CEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876432 2223333333 234444444433211100 00111111 1112234444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
++|++|+++||+
T Consensus 262 d~G~~Vll~~Dsl 274 (455)
T PRK07960 262 DRGQHVLLIMDSL 274 (455)
T ss_pred HcCCCeEEEecch
Confidence 488999999999
No 480
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=58.76 E-value=18 Score=34.94 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.8
Q ss_pred cc-cccHHHHHHHHhcccc
Q 000559 189 NF-RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 189 ~i-GvGKTtLa~~v~~~~~ 206 (1422)
|| |.||||+++.++....
T Consensus 2 GVsG~GKStvg~~lA~~lg 20 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG 20 (161)
T ss_pred CCCccCHHHHHHHHHHHcC
Confidence 56 9999999999998754
No 481
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.75 E-value=75 Score=39.55 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=29.4
Q ss_pred ceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCch
Q 000559 310 ECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPL 361 (1422)
Q Consensus 310 ~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 361 (1422)
+.++++.+++++-.++|+.++-... . .-....++.+++|.|.-.
T Consensus 556 ~ei~~~~lse~qRl~iLq~y~~~~~-~-------n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 556 HEIEVPALSEEQRLEILQWYLNHLP-L-------NQDVNLKQLARKTSGFSF 599 (953)
T ss_pred hhccCCCCCHHHHHHHHHHHHhccc-c-------chHHHHHHHHHhcCCCCH
Confidence 6788999999999999998873221 0 112233567777777644
No 482
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=58.60 E-value=5.1 Score=39.44 Aligned_cols=38 Identities=37% Similarity=0.465 Sum_probs=24.7
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc----ccHHHHHHHHHHHh
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD----FDILRISKAILESI 235 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~----~~~~~~~~~i~~~l 235 (1422)
|.||||+|..+.+= |.. |-.+..+ ....++.+.+++.+
T Consensus 9 GCGKTTva~aL~~L-----Fg~--wgHvQnDnI~~k~~~~f~~~~l~~L 50 (168)
T PF08303_consen 9 GCGKTTVALALSNL-----FGE--WGHVQNDNITGKRKPKFIKAVLELL 50 (168)
T ss_pred CcCHHHHHHHHHHH-----cCC--CCccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999988764 433 5443221 14556666777777
No 483
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=58.43 E-value=34 Score=33.81 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.5
Q ss_pred cc-cccHHHHHHHHhccc
Q 000559 189 NF-RVGKTTLARLVYNDL 205 (1422)
Q Consensus 189 ~i-GvGKTtLa~~v~~~~ 205 (1422)
|. |.||||+|+.+....
T Consensus 6 G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 6 GVSGSGKSTVGKALAERL 23 (150)
T ss_pred cCCCCCHHHHHHHHHhhc
Confidence 44 999999999998864
No 484
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=58.18 E-value=22 Score=41.65 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=46.5
Q ss_pred Ccccc----cccHHHHHHHHhcccccccCCcEEEEEEcCccc-HHHHHHHHHHHhcCCC-------CCCCChh-----HH
Q 000559 186 DDVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFD-ILRISKAILESITLSS-------CDFKDLN-----PV 248 (1422)
Q Consensus 186 ~~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~-----~~ 248 (1422)
..++| |+|||+|+.++++... -+.++++-+++... ..++.+++.+.=.... .+....+ ..
T Consensus 141 QkigIF~gaGvgk~~L~~~ia~~~~---~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~ 217 (436)
T PRK02118 141 QKIPIFSVSGEPYNALLARIALQAE---ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDM 217 (436)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHhhC---CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHH
Confidence 44555 9999999999988743 24577888887643 4444444433221110 0111111 11
Q ss_pred HHHHHHHhc---cceeEEEeccCC
Q 000559 249 QVKLKQEVA---GRKFLIVLDDVW 269 (1422)
Q Consensus 249 ~~~l~~~l~---~k~~LlVlDdv~ 269 (1422)
+-.+.++++ ++.+|+++||+-
T Consensus 218 AltiAEyfrd~g~~~VLli~DdlT 241 (436)
T PRK02118 218 ALAVAEKFALEGKKKVLVLLTDMT 241 (436)
T ss_pred HHHHHHHHHhcCCCCEEEeccCch
Confidence 223445553 389999999994
No 485
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=58.00 E-value=20 Score=38.63 Aligned_cols=36 Identities=22% Similarity=0.128 Sum_probs=24.2
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRI 227 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~ 227 (1422)
|+||||+|..++.....+++ .++-|++...-+....
T Consensus 12 GvGKTT~a~nLA~~la~~G~-~VlliD~DpQ~s~~~w 47 (231)
T PRK13849 12 GAGKTTALMGLCAALASDGK-RVALFEADENRPLTRW 47 (231)
T ss_pred CccHHHHHHHHHHHHHhCCC-cEEEEeCCCCCCHHHH
Confidence 99999999988776543334 4666777655554443
No 486
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=57.91 E-value=41 Score=36.03 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=31.0
Q ss_pred HHHHHhccceeEEEeccCCCC-CccchhhhhccCCC-CCCCcEEEEEcCChHHHHh
Q 000559 251 KLKQEVAGRKFLIVLDDVWSK-NYGLWEVLKSPFMA-GAPGSKIIVTTRDENVALT 304 (1422)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~~ 304 (1422)
.+.+.+..++-++++|+--.. +....+.+...+.. ...|..||++|.+......
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 455566677889999987443 12222333333322 1246778888888765443
No 487
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=57.57 E-value=19 Score=43.97 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.0
Q ss_pred cccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhccc
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~~ 205 (1422)
.++|+...+.++.+.+..-......|-| |.|||++|+.+++.-
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 5889888888877776543222222333 999999999988763
No 488
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=57.54 E-value=28 Score=41.17 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=40.3
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcC-cccHHHHHHHHHHHhcCCC-------CCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSD-DFDILRISKAILESITLSS-------CDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~-----~~~~~l~~~l- 256 (1422)
|.|||||.+.++.... .+..+.+.+.+ ...+.+...+....-.... .+..... .....+.+++
T Consensus 155 G~GKStLl~~I~~~~~---~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~ 231 (422)
T TIGR02546 155 GVGKSTLLGMIARGAS---ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFR 231 (422)
T ss_pred CCChHHHHHHHhCCCC---CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998643 23344444444 3445555544443321111 0111111 1122234444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 232 ~~g~~Vl~~~Dsl 244 (422)
T TIGR02546 232 DQGKRVLLMMDSL 244 (422)
T ss_pred HCCCcEEEEEeCc
Confidence 478999999999
No 489
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=57.41 E-value=9 Score=39.75 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=16.5
Q ss_pred cc-cccHHHHHHHHhcccccc
Q 000559 189 NF-RVGKTTLARLVYNDLAVE 208 (1422)
Q Consensus 189 ~i-GvGKTtLa~~v~~~~~~~ 208 (1422)
|+ |.||||+++.+++.....
T Consensus 3 GiDGsGKtT~~~~L~~~l~~~ 23 (186)
T PF02223_consen 3 GIDGSGKTTQIRLLAEALKEK 23 (186)
T ss_dssp ESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 45 999999999999876533
No 490
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=57.21 E-value=16 Score=44.28 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=28.4
Q ss_pred cccccchhHHHHHHHhcCCCCCCCcccc----cccHHHHHHHHhcc
Q 000559 163 AVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYND 204 (1422)
Q Consensus 163 ~~vGr~~~~~~i~~~l~~~~~~~~~v~i----GvGKTtLa~~v~~~ 204 (1422)
.++|....++++.+.+..-......|-| |.||+++|+.+...
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4788887777777766532222222323 99999999999865
No 491
>CHL00206 ycf2 Ycf2; Provisional
Probab=56.86 E-value=56 Score=45.40 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=36.9
Q ss_pred cceeEEEeccCCCCCcc-----chhhhhccCCC-----CCCCcEEEEEcCChHHHHhh----CCCCceeeCCCCChhhHH
Q 000559 258 GRKFLIVLDDVWSKNYG-----LWEVLKSPFMA-----GAPGSKIIVTTRDENVALTL----GCPGECHNLELLSDNDCW 323 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~~-----~~~~l~~~~~~-----~~~gs~ilvTtR~~~v~~~~----~~~~~~~~l~~l~~~~~~ 323 (1422)
..+++|.+|++++-... ....+...+.. ...|--||.+|-..++.+.. |--+..+.+..++..+-.
T Consensus 1731 ~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~ 1810 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQR 1810 (2281)
T ss_pred CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHH
Confidence 46899999999664321 13333333321 12243456667665554322 222466777766665544
Q ss_pred HHHH
Q 000559 324 SVFK 327 (1422)
Q Consensus 324 ~lf~ 327 (1422)
+.|.
T Consensus 1811 kiL~ 1814 (2281)
T CHL00206 1811 KHFF 1814 (2281)
T ss_pred HHHH
Confidence 4443
No 492
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=56.49 E-value=21 Score=38.81 Aligned_cols=109 Identities=21% Similarity=0.298 Sum_probs=58.6
Q ss_pred CCcccccchhHHHHHHHhcCC---CCCCC--cccc----cccHHHHHHHHhcccccccCCcEEEEEEcCcccHHHHHHHH
Q 000559 161 EPAVYGRDGDKAKVLDMVLSH---DTNND--DVNF----RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFDILRISKAI 231 (1422)
Q Consensus 161 ~~~~vGr~~~~~~i~~~l~~~---~~~~~--~v~i----GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 231 (1422)
+..++|..-.++.|+..+.+- +...+ +++. |.||.-+|+.+++.....+-+. ......
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S-------------~~V~~f 147 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS-------------PFVHHF 147 (344)
T ss_pred HHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc-------------hhHHHh
Confidence 345778777777777766541 22223 3343 9999999999988754222110 001111
Q ss_pred HHHhcCCCCCCCChhHHHHHHHHHhc-----cceeEEEeccCCCCCccchhhhhccCC
Q 000559 232 LESITLSSCDFKDLNPVQVKLKQEVA-----GRKFLIVLDDVWSKNYGLWEVLKSPFM 284 (1422)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~~~ 284 (1422)
..... .+....++.-..+++++++ -+|-|.|+|+|+.....-.+.+...+.
T Consensus 148 vat~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 148 VATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 11111 1122333333344444443 468999999997665555666655443
No 493
>PTZ00301 uridine kinase; Provisional
Probab=56.30 E-value=5 Score=42.29 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.4
Q ss_pred cccc----cccHHHHHHHHhccc
Q 000559 187 DVNF----RVGKTTLARLVYNDL 205 (1422)
Q Consensus 187 ~v~i----GvGKTtLa~~v~~~~ 205 (1422)
+||| |.||||+|+.+.+..
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 4666 999999999887654
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=56.20 E-value=14 Score=43.29 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=18.0
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEE
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCV 218 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~ 218 (1422)
|+||||+|..++...+.+++ .++.|++
T Consensus 110 GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 110 GSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred CCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 99999999888765542223 3555554
No 495
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=56.14 E-value=29 Score=41.25 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=38.1
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCc-ccHHHHHHHHHHHhcCC-------CCCCCChh-----HHHHHHHHHh-
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDD-FDILRISKAILESITLS-------SCDFKDLN-----PVQVKLKQEV- 256 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~-----~~~~~l~~~l- 256 (1422)
|.|||||++.+..... -+..+...+... ..+.++..+....-... ..+..... .....+.+++
T Consensus 173 G~GKStLl~~I~~~~~---~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~fr 249 (440)
T TIGR01026 173 GVGKSTLLGMIARNTE---ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAEYFR 249 (440)
T ss_pred CCCHHHHHHHHhCCCC---CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987643 122233334432 33444444433221111 00111111 1112233444
Q ss_pred -ccceeEEEeccC
Q 000559 257 -AGRKFLIVLDDV 268 (1422)
Q Consensus 257 -~~k~~LlVlDdv 268 (1422)
+++++|+++||+
T Consensus 250 d~G~~Vll~~Dsl 262 (440)
T TIGR01026 250 DQGKDVLLLMDSV 262 (440)
T ss_pred HCCCCEEEEEeCh
Confidence 588999999999
No 496
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=56.04 E-value=31 Score=40.65 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=37.9
Q ss_pred cccHHHHHHHHhcccccccCCcEEEEEEcCccc-HHHHHHHHHHHhcCC--CC-----CCCC-h--h----HHHHHHHHH
Q 000559 191 RVGKTTLARLVYNDLAVEDFNSRAWVCVSDDFD-ILRISKAILESITLS--SC-----DFKD-L--N----PVQVKLKQE 255 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~--~~-----~~~~-~--~----~~~~~l~~~ 255 (1422)
|+|||||++.++.... -+..+..-+++... ..+..+. .++.. .. ..++ . . .....+.++
T Consensus 167 G~GKStLl~~i~~~~~---~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEy 240 (434)
T PRK08472 167 GVGKSTLMGMIVKGCL---APIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEY 240 (434)
T ss_pred CCCHHHHHHHHhhccC---CCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHhhHHHHHHHHHHHH
Confidence 9999999999986532 23344444554432 2333332 22221 00 0111 0 0 112234444
Q ss_pred h--ccceeEEEeccC
Q 000559 256 V--AGRKFLIVLDDV 268 (1422)
Q Consensus 256 l--~~k~~LlVlDdv 268 (1422)
+ +++++|+++||+
T Consensus 241 Frd~G~~Vll~~Dsl 255 (434)
T PRK08472 241 FKNQGLDVLFIMDSV 255 (434)
T ss_pred HHHcCCCEEEecccc
Confidence 4 488999999999
No 497
>PRK06547 hypothetical protein; Provisional
Probab=55.94 E-value=9 Score=38.99 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=14.0
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|.||||+|+.++....
T Consensus 25 GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 25 GSGKTTLAGALAARTG 40 (172)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 9999999999987644
No 498
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.85 E-value=19 Score=38.52 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=90.3
Q ss_pred ccccchhHHHHHHHhcCCCCCC-Ccccc-cccHHHHHHHHhcccc---ccc--CCcEEEEEEcCc----------c----
Q 000559 164 VYGRDGDKAKVLDMVLSHDTNN-DDVNF-RVGKTTLARLVYNDLA---VED--FNSRAWVCVSDD----------F---- 222 (1422)
Q Consensus 164 ~vGr~~~~~~i~~~l~~~~~~~-~~v~i-GvGKTtLa~~v~~~~~---~~~--F~~~~wv~~s~~----------~---- 222 (1422)
+.++++...++.......+... -+.|- |.||-|.+..+.++.- +.+ -+.+.|.+-|.. .
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 5667777777776665332222 12333 9999987766655431 111 344555543322 1
Q ss_pred -------cHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhcccee-EEEeccCCCCCccchhhhhccCCCCCCCcEEEE
Q 000559 223 -------DILRISKAILESITLSSCDFKDLNPVQVKLKQEVAGRKF-LIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIV 294 (1422)
Q Consensus 223 -------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ilv 294 (1422)
.-+.+.+++++++..... ++. -..|.| ++|+-.+++-..+.-..++.-...-...+|+|+
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q----ie~--------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl 162 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ----IET--------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLIL 162 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc----hhh--------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 112344444444432211 000 012233 455555533333333444443333334677777
Q ss_pred EcCCh-HHHHhhCCCCceeeCCCCChhhHHHHHHHhhhcCCCccccccccchHHHHHHHHHHhCCCc
Q 000559 295 TTRDE-NVALTLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLP 360 (1422)
Q Consensus 295 TtR~~-~v~~~~~~~~~~~~l~~l~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 360 (1422)
..-+- .+.....+.--.+.+..-+++|-...+.+.+-... .. --.+++.+|+++++|.-
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~-l~------lp~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG-LQ------LPKELLKRIAEKSNRNL 222 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc-cc------CcHHHHHHHHHHhcccH
Confidence 43321 11111211114578899999999998888763321 11 22578999999988854
No 499
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=55.65 E-value=38 Score=36.12 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=28.9
Q ss_pred cceeEEEeccCCCCCc--c--c-hhhhhccCCCCCCCcEEEEEcCChHHHHhh
Q 000559 258 GRKFLIVLDDVWSKNY--G--L-WEVLKSPFMAGAPGSKIIVTTRDENVALTL 305 (1422)
Q Consensus 258 ~k~~LlVlDdv~~~~~--~--~-~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~ 305 (1422)
.++-|+++|..-.... + . -..+...+... .++.+|++|.+..++...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 5789999999743210 1 1 11222333222 478999999999887654
No 500
>PRK00889 adenylylsulfate kinase; Provisional
Probab=55.63 E-value=12 Score=38.22 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=14.2
Q ss_pred cccHHHHHHHHhcccc
Q 000559 191 RVGKTTLARLVYNDLA 206 (1422)
Q Consensus 191 GvGKTtLa~~v~~~~~ 206 (1422)
|.||||+|+.++....
T Consensus 14 GsGKST~a~~la~~l~ 29 (175)
T PRK00889 14 GAGKTTIARALAEKLR 29 (175)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998753
Done!