Query 000559
Match_columns 1422
No_of_seqs 491 out of 5834
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 15:55:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000559.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_333-336//hhsearch_pdb/000559hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 422.2 24.2 114 560-673 69-189 (768)
2 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 386.2 17.1 314 162-497 128-473 (549)
3 3rgz_A Protein brassinosteroid 1.0 1 1 384.0 26.9 645 568-1393 50-766 (768)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 343.1 25.0 307 158-495 120-452 (1249)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 340.4 34.5 224 1148-1385 406-636 (680)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 325.3 28.5 140 1187-1347 472-620 (680)
7 1vt4_I APAF-1 related killer D 1.0 1 1 313.1 18.0 281 162-488 128-436 (1221)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 312.4 22.9 102 568-670 32-136 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 311.5 27.9 178 1187-1384 392-572 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 297.6 29.8 104 568-672 33-139 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=422.25 Aligned_cols=114 Identities=20% Similarity=0.116 Sum_probs=83.1
Q ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-C
Q ss_conf 699842799300999636456766800018877552442386552-1372--21467655365046655557555122-2
Q 000559 560 LSEVLSKFKKLRVLSLRNYYITEVPNSIRLLTHLRYLNFSGTRIC-HIPE--SVGFLSHLQILLLKDCHRLKKLPTNV-E 635 (1422)
Q Consensus 560 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~n~i~-~lp~--~~~~L~~L~~L~l~~~~~~~~lp~~i-~ 635 (1422)
++..+..++.|+.++++.+.+..+|..|+.+.+|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 69657316802246786888678703324578899898989857870789678727889998989688267747977856
Q ss_pred CCCCCCEEEECCCCCCCCCCCC---CCCCCCCCCCCEEEEC
Q ss_conf 2233570852299743102545---4222344434604733
Q 000559 636 NLIDLLYFDISGQNLITEMPVG---MNKLKCLLTLSNFVVG 673 (1422)
Q Consensus 636 ~L~~L~~L~l~~~~~~~~~p~~---~~~L~~L~~L~~~~~~ 673 (1422)
++++|++|++++|.+....|.. ++++++|++|++..+.
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 189 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCC
T ss_conf 38899989897983588587155664358988989897880
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=386.16 Aligned_cols=314 Identities=18% Similarity=0.212 Sum_probs=249.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCC-CCCCCCC----CCCHHHHHHHHHC--CCCCCC-CCCEEEEEECCCC--CHHHHHHHH
Q ss_conf 8300230239999999607999-9996431----3309999999935--434456-8738999976865--578999999
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDT-NNDDVNF----RVGKTTLARLVYN--DLAVED-FNSRAWVCVSDDF--DILRISKAI 231 (1422)
Q Consensus 162 ~~~vgr~~~~~~i~~~l~~~~~-~~~~i~i----G~GKTtLa~~v~~--~~~~~~-f~~~~wv~~~~~~--~~~~~~~~i 231 (1422)
+..|||++++++|.++|..... ..++|+| |+||||||+++|+ +.++.. |++++||++++.+ +...++..|
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 76078417999999987251578962899986999988999999998406987466995799997898787999999999
Q ss_pred HHHHCCCCC-------CCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHHH
Q ss_conf 998118889-------9899248999999985161-13799346777891105563024788999967999828738997
Q 000559 232 LESITLSSC-------DFKDLNPVQVKLKQEVAGR-KFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVAL 303 (1422)
Q Consensus 232 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~~ 303 (1422)
+.+++.... +..+.+.+...+++.|+++ ||||||||||+.....|.. . .||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~-------~-~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ-------E-LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-------H-TTCEEEEEESBGGGGG
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC-------C-CCCEEEEECCCHHHHH
T ss_conf 9998537553455553314699999999999768984899997999714415432-------6-9988999749779999
Q ss_pred HHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 61889962609999935399999984505887432313664389999999970798158999988771189768999998
Q 000559 304 TLGCPGECHNLELLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQDIL 383 (1422)
Q Consensus 304 ~~~~~~~~~~l~~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~~l 383 (1422)
.++....++++++|+.++||+||.+++++... ++ ...+++++|+++|+|+||||+++|+.++.+ . .+|...+
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~---~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l 351 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GE---KEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQL 351 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----C---HHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHH
T ss_pred HCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC---CH---HHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHHH
T ss_conf 70889738989998989999999987448998---55---689999999999599839999999984434-4-8999875
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHH--CCCCCCCCCHH
Q ss_conf 201469999999259999964059565667964-----------51147999501769999999980--98678887314
Q 000559 384 NSNIWDLSDDGEIPAVLQLSYHHLPSHLKRCFA-----------YCAIFPKDYEFEEKEVVLLWIAE--GLIPQSTDYKQ 450 (1422)
Q Consensus 384 ~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~f~-----------~~~~fp~~~~i~~~~l~~~w~~~--g~~~~~~~~~~ 450 (1422)
....+.. ....+..++.+||++||.+.|.||+ |||+||+++.|+ +.+|+|+ ||+........
T Consensus 352 ~~~l~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 352 NNKLESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred HHHHHCC-CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCC
T ss_conf 7876136-477789897516202267999997526522336743235608997666----53311013550026778999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 99989799999983223312369-965210459999999972056249
Q 000559 451 LEDVGVGYFRDLLSRSIFQQVNG-DVSKFVMHDLINDLARSVSGETSF 497 (1422)
Q Consensus 451 ~~~~~~~~~~~L~~~~li~~~~~-~~~~~~~h~~i~~~~~~~~~~~~~ 497 (1422)
.++.+. ++++|+++||++.... ....|+|||++|+||+.++.+++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999999-99999875883671479804999676999999999889899
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=384.05 Aligned_cols=645 Identities=18% Similarity=0.124 Sum_probs=303.3
Q ss_pred CCCCEEEECCCCCCC----CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCC
Q ss_conf 930099963645676----68000188775524423865521372214676553650466555575551--222223357
Q 000559 568 KKLRVLSLRNYYITE----VPNSIRLLTHLRYLNFSGTRICHIPESVGFLSHLQILLLKDCHRLKKLPT--NVENLIDLL 641 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~----lp~~~~~l~~Lr~L~L~~n~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~ 641 (1422)
.+++.|+|+++.+.. +|.++.++++|++++++.+.+..+|..|+++++|++|++++|.....+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 92789877899867755766965731680224678688867870332457889989898985787078967872788999
Q ss_pred EEEECCCCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCHHCCCCCCCCCCEEEEECCCCCCCCCCCCC---CCCCCCCC
Q ss_conf 08522997431025454-222344434604733688889111124326795268817656112223345---77877668
Q 000559 642 YFDISGQNLITEMPVGM-NKLKCLLTLSNFVVGLNTGSGLEDLKSLKFLRGKLCISKLRNVVQDITEPI---LSDKEDLE 717 (1422)
Q Consensus 642 ~L~l~~~~~~~~~p~~~-~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~~~~~~~~~---l~~~~~L~ 717 (1422)
+|++++|.+...+|..+ .++++|++|++..+..... .+.. +..+++|+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------------~~~~~~~~~~l~~L~ 181 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA----------------------------NVVGWVLSDGCGELK 181 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE----------------------------THHHHHHTTCCTTCC
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC----------------------------CCHHHHHHCCCCCCC
T ss_conf 8989688267747977856388999898979835885----------------------------871556643589889
Q ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 27999813666777656886358772015999995489997678999997879888985028988188999868999998
Q 000559 718 VLQLEWESLYLHESSECSRVPDINVLDRLRPHGNLKELSINFYGGTKFPSWVGDPSFSSMVDLRLENCEKCTCLPALGAL 797 (1422)
Q Consensus 718 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l 797 (1422)
.|+++.+.+... ..... +++|+.|++++|.+...+|.++.+
T Consensus 182 ~L~Ls~n~l~~~--------------~~~~~-------------------------l~~L~~L~Ls~n~l~~~~~~l~~l 222 (768)
T 3rgz_A 182 HLAISGNKISGD--------------VDVSR-------------------------CVNLEFLDVSSNNFSTGIPFLGDC 222 (768)
T ss_dssp EEECCSSEEESC--------------CBCTT-------------------------CTTCCEEECCSSCCCSCCCBCTTC
T ss_pred EEECCCCCCCCC--------------CCCCC-------------------------CCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 898978803465--------------78454-------------------------786898989288278877111269
Q ss_pred CCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 98642212278661696440137888788986534323557755655556778843338642555113695421249999
Q 000559 798 PSLKELTIKGLRELITIGSEIYGDDCLKPFQSLETLCFQNLGVWSHWDPIGEDGQVEKFPVLRKLSILNCPRLSERLPDH 877 (1422)
Q Consensus 798 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~f~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~ 877 (1422)
++|++|++++|.....++..+. .+++|+.|.+.++......... .+++|+.|++++| .+.+.+|..
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~------~l~~L~~L~Ls~n~l~~~~~~~-------~l~~L~~L~L~~n-~l~~~ip~~ 288 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAIS------TCTELKLLNISSNQFVGPIPPL-------PLKSLQYLSLAEN-KFTGEIPDF 288 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTT------TCSSCCEEECCSSCCEESCCCC-------CCTTCCEEECCSS-EEEESCCCC
T ss_pred CCCCEEECCCCCCCCCCCHHHH------CCCCCCEEECCCCCCCCCCCCC-------CCCCCCEEECCCC-CCCCCCCHH
T ss_conf 9999897948858781657774------4888898989888665716724-------3687898979178-557725888
Q ss_pred ----CCCCCEEEEECCCC---CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf ----99956999807778---11148899743089803488730113465554421124654211133333354219999
Q 000559 878 ----LPSLEELEVRGCEK---LVVSLSGLPLLCKLELSSCKRMVCRSIDSQSIKHATLSNVSEFSRLSRHNFQKVECLKI 950 (1422)
Q Consensus 878 ----l~~L~~L~l~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~L~~L~i 950 (1422)
+++|++|++++|.. ....+..+++|+.|++++|......+.. ....+++|+.|.+
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~------------------~l~~l~~L~~L~L 350 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD------------------TLLKMRGLKVLDL 350 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH------------------HHTTCTTCCEEEC
T ss_pred HHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH------------------HHHCCCCCCEEEC
T ss_conf 8844686889989689677842367755877667789788525737978------------------8724888878848
Q ss_pred ECCCCHHHHHHHHHHCCCCCCCCCCC-CCCEEEECCCCCCCCHHHH-CC--CCCCCEEEECCCCCCCCCCHHHHHCCCCC
Q ss_conf 46761124455542102665555655-5433873146773100000-02--36776688735767655306753016865
Q 000559 951 IGCEELEHLWNEICLEELPHGLHSVA-SLRKLFVANCQSLVSFLEA-CF--LSNLSELVIQNCSALISLNEVTKHNYLHL 1026 (1422)
Q Consensus 951 ~~c~~l~~l~~~~~~~~l~~~~~~l~-~L~~L~l~~~~~l~~~~~~-~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~L 1026 (1422)
.++.-. +.+|..+..++ +|++|++++|.....++.. .. +++|+.|++++|.....++. .+..+++|
T Consensus 351 s~n~l~---------~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L 420 (768)
T 3rgz_A 351 SFNEFS---------GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSEL 420 (768)
T ss_dssp CSSEEE---------ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTC
T ss_pred CCCCCC---------CCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCH-HHHCCCCC
T ss_conf 478437---------62309898632277199862787478767666533247761898977846542487-77568987
Q ss_pred CEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 50773488883010012678657588840357731133453336876885378416998984332358642123513412
Q 000559 1027 KSLQIEGCQSLMLIARRQLPSSLTKVEIRNCENLQLTHGENINNTSLSLLESLDISGCQSLMCLSRRGRLSTVLRRLKIQ 1106 (1422)
Q Consensus 1027 ~~L~l~~c~~l~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~ 1106 (1422)
+.|++++|.....++ ..+..+++|+.|++++|.....++......++|+.++++
T Consensus 421 ~~L~Ls~N~l~~~~p--------------------------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIP--------------------------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CEEECCSSEEESCCC--------------------------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CEEECCCCCCCCCCC--------------------------HHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEEC
T ss_conf 989895884668546--------------------------777449988989897881547189788287773299901
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCC
Q ss_conf 47888657755687654530688813634102357998877546087336888010467420314699987712545566
Q 000559 1107 TCPKLKSLSSSEGQLPVAIKHLEVQNCAELTTLSSTGKLPEALQYLSIADCPQLESIAESFHDNAALVFILIGNCRKLQS 1186 (1422)
Q Consensus 1107 ~c~~L~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 1186 (1422)
++.-...++... ..+ ++|++|++++|.....+|..+..+++|+.|++++|.....
T Consensus 475 ~N~l~~~~p~~l------------------------~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 475 FNDLTGEIPSGL------------------------SNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp SSCCCSCCCGGG------------------------GGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCCCCCCCHHH------------------------HCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 995137588788------------------------169-9899897539951896876885689999898978943374
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC---------------------------------------------
Q ss_conf 41000487665637613789874248999899997---------------------------------------------
Q 000559 1187 VPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNL--------------------------------------------- 1221 (1422)
Q Consensus 1187 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L--------------------------------------------- 1221 (1422)
+|..+..+++|+.|++++|+....+|..+.....+
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 88777088989989898884688279578604212232013454211113444322223322210013556323200232
Q ss_pred -CEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf -6899704789776942257777545044134458888776533331145558654223486887444775599998536
Q 000559 1222 -RVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALSF 1300 (1422)
Q Consensus 1222 -~~L~l~~~~~l~~~~~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~ 1300 (1422)
..+++..+...+..|..+..+++|+.||+++|...+.+|. .+..+++|+.|++++|.....+
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-----------------~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-----------------EIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-----------------GGGGCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCH-----------------HHHCCCCCCEEECCCCCCCCCC
T ss_conf 11001133100462743340335665797858801555877-----------------8841415787848688038878
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCCCHHH----HH
Q ss_conf 21001266876436300354666667893798888865601033788888888989888757262249958134----43
Q 000559 1301 PEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKSFPWEGLPSSLQQLYVEDCPQLGA----NC 1376 (1422)
Q Consensus 1301 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~l~~~L~~L~i~~c~~l~~----~~ 1376 (1422)
|. .+..+++|+.|++++|.....+| ..+.++++|+.|++++|+--..+|..+.+.++....+.+||.++. .|
T Consensus 673 p~---~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 673 PD---EVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp CG---GGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred CH---HHHCCCCCCEEECCCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCC
T ss_conf 96---78477789989897880238688-677578878978796881556089960102489777569832108877678
Q ss_pred HC-CCCCCCEEECCCEEE
Q ss_conf 11-799944021257037
Q 000559 1377 KR-YGPEWSKIAHIPCVM 1393 (1422)
Q Consensus 1377 ~~-~~~~~~~~~~i~~~~ 1393 (1422)
.. .+++|++++|++..+
T Consensus 749 ~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 749 DPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSCC--------------
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 887668889888765667
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=343.13 Aligned_cols=307 Identities=18% Similarity=0.279 Sum_probs=240.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC----CCCHHHHHHHHHCCCCC-C-C-CCCEEEEEECCCC--CHHHHH
Q ss_conf 688983002302399999996079999996431----33099999999354344-5-6-8738999976865--578999
Q 000559 158 LATEPAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAV-E-D-FNSRAWVCVSDDF--DILRIS 228 (1422)
Q Consensus 158 ~~~~~~~vgr~~~~~~i~~~l~~~~~~~~~i~i----G~GKTtLa~~v~~~~~~-~-~-f~~~~wv~~~~~~--~~~~~~ 228 (1422)
......||||+++++++.++|.......++|+| |+||||||+++|++.+. . . ++.++||++++.. +....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHHHH
T ss_conf 99986412579999999999861358877799991898888899999860756788627881799997885726799999
Q ss_pred HHHHHHHCCCCC----CCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 999998118889----9899248999999985161--1379934677789110556302478899996799982873899
Q 000559 229 KAILESITLSSC----DFKDLNPVQVKLKQEVAGR--KFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENVA 302 (1422)
Q Consensus 229 ~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v~ 302 (1422)
..++..+..... ...+.+.+...++..+.++ ||||||||||+. ..|+.+ .+||+||||||++.++
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHH-------CCCCEEEEECCCHHHH
T ss_conf 9999986553033347887778999999999735678789999567997--788763-------6897899992778998
Q ss_pred HHHCCCCCEEECCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 76188996260999-99353999999845058874323136643899999999707981589999887711897689999
Q 000559 303 LTLGCPGECHNLEL-LSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQRDAEWQD 381 (1422)
Q Consensus 303 ~~~~~~~~~~~l~~-l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~~~~~w~~ 381 (1422)
..+......+.+++ |+.+++++||...++... + ...+.+++|+++|+|+||||+++|++|+.+.. .|..
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~---~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~~~~ 340 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----E---DLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--RWAY 340 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----T---TCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--CHHH
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH-----H---HCCHHHHHHHHHHCCCHHHHHHHHHHHHCCHH--HHHH
T ss_conf 763488437982588887889999998657981-----3---48388999999849977999999998624805--7999
Q ss_pred HHHCC---CCC-CCCC-----CCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 98201---469-9999-----99259999964059565667964511479995017699999999809867888731499
Q 000559 382 ILNSN---IWD-LSDD-----GEIPAVLQLSYHHLPSHLKRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLE 452 (1422)
Q Consensus 382 ~l~~~---~~~-~~~~-----~~i~~~l~~s~~~L~~~~k~~f~~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~ 452 (1422)
.+... .+. .... ..+..+|.+||+.|+++.|.||+|||+||+++.|+.+.++.+|.++ +
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~ 408 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------T 408 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC------------H
T ss_conf 9999865044303465564467799999989986799999999972813799751899999885898------------8
Q ss_pred HHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98979999998322331236-99652104599999999720562
Q 000559 453 DVGVGYFRDLLSRSIFQQVN-GDVSKFVMHDLINDLARSVSGET 495 (1422)
Q Consensus 453 ~~~~~~~~~L~~~~li~~~~-~~~~~~~~h~~i~~~~~~~~~~~ 495 (1422)
+.+..++++|+++||++... +....|+||+++|+|++.++.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 89999999997446338963798118996689999987450678
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=340.39 Aligned_cols=224 Identities=17% Similarity=0.127 Sum_probs=153.3
Q ss_pred CCCEEEECCCCCCHHHH-HHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCCCEE
Q ss_conf 54608733688801046-74203146999877125455664100048766563761378987--4248999899997689
Q 000559 1148 ALQYLSIADCPQLESIA-ESFHDNAALVFILIGNCRKLQSVPNALHKLVSLDQMYIGNCPSL--VSFPDERLPNQNLRVI 1224 (1422)
Q Consensus 1148 ~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L 1224 (1422)
+|++|++++|.....++ ..+.++++|+.+++++|......+..+..+++|+.|++++|... ...|..+..+++|+.|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 88888677875754357553257546127844899754227645500754310110146442256677645557878999
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 97047897769422577775450441344588887765333311455586542234868874447755999985362100
Q 000559 1225 EISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTSLSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALSFPEVS 1304 (1422)
Q Consensus 1225 ~l~~~~~l~~~~~~~~~l~~L~~L~ls~n~~~~~lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 1304 (1422)
++++|......+..+.++++|+.|++++|......+.. .. ..+...+..+++|+.|++++|. ++.+|..
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~-~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~- 554 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA--------NP-GGPIYFLKGLSHLHILNLESNG-FDEIPVE- 554 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT--------ST-TSCCCTTTTCTTCCEEECCSSC-CCCCCTT-
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHH--------CC-CCCCHHHCCCCCCCEEECCCCC-CCCCCHH-
T ss_conf 89999877679446345534688858899730000000--------46-7741423379988888899997-8877977-
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC---CCCCCCEEECCCCCCHHHHHH-CCC
Q ss_conf 1266876436300354666667893798888865601033788888888989---888757262249958134431-179
Q 000559 1305 VRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISECPRLKSFPWEG---LPSSLQQLYVEDCPQLGANCK-RYG 1380 (1422)
Q Consensus 1305 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~---l~~~L~~L~i~~c~~l~~~~~-~~~ 1380 (1422)
.+..+++|+.|++++ +.++.++...|.++++|+.|++++| .++.++... ..++|+.|++.+||-.+.+-. .+-
T Consensus 555 -~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~ 631 (680)
T 1ziw_A 555 -VFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631 (680)
T ss_dssp -TTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSE
T ss_pred -HCCCCCCCCEEECCC-CCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHH
T ss_conf -734666752238999-9777679768378988888989999-6870596683011466577983189702577668999
Q ss_pred CCCCE
Q ss_conf 99440
Q 000559 1381 PEWSK 1385 (1422)
Q Consensus 1381 ~~~~~ 1385 (1422)
..|..
T Consensus 632 ~~~~~ 636 (680)
T 1ziw_A 632 VNWIN 636 (680)
T ss_dssp ECCSS
T ss_pred HHHHH
T ss_conf 99987
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=325.28 Aligned_cols=140 Identities=15% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC--------CCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 4100048766563761378987424899989999768997047897769--------42257777545044134458888
Q 000559 1187 VPNALHKLVSLDQMYIGNCPSLVSFPDERLPNQNLRVIEISRCEELRPL--------PSGVERLNSLQELDISLCIPASG 1258 (1422)
Q Consensus 1187 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~--------~~~~~~l~~L~~L~ls~n~~~~~ 1258 (1422)
+|..+.++++|+.|++++|......+..+..+++|+.|++++|...... ...+.++++|+.|++++|... .
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~ 550 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-E 550 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCC-C
T ss_conf 776455578789998999987767944634553468885889973000000046774142337998888889999788-7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCC
Q ss_conf 776533331145558654223486887444775599998536210012668764363003546666678937988-8886
Q 000559 1259 LPTNLTSLSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQ-NLTS 1337 (1422)
Q Consensus 1259 lp~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~l~~ 1337 (1422)
+|.. .+..+++|+.|++++| .++.+|.. .+..+++|+.|++++ +.++.++...+. .+++
T Consensus 551 i~~~----------------~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~ 610 (680)
T 1ziw_A 551 IPVE----------------VFKDLFELKIIDLGLN-NLNTLPAS--VFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRN 610 (680)
T ss_dssp CCTT----------------TTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTT
T ss_pred CCHH----------------HCCCCCCCCEEECCCC-CCCCCCHH--HHCCCCCCCEEECCC-CCCCCCCHHHHCCCCCC
T ss_conf 7977----------------7346667522389999-77767976--837898888898999-96870596683011466
Q ss_pred CCCEECCCCC
Q ss_conf 5601033788
Q 000559 1338 LEYLSISECP 1347 (1422)
Q Consensus 1338 L~~L~l~~c~ 1347 (1422)
|+.|++++||
T Consensus 611 L~~l~l~~N~ 620 (680)
T 1ziw_A 611 LTELDMRFNP 620 (680)
T ss_dssp CSEEECTTCC
T ss_pred CCEEECCCCC
T ss_conf 5779831897
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=313.10 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=219.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCCCC----CCCHHHHHHHHHCCCCCCC-CCC-EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 83002302399999996079999996431----3309999999935434456-873-89999768655789999999981
Q 000559 162 PAVYGRDGDKAKVLDMVLSHDTNNDDVNF----RVGKTTLARLVYNDLAVED-FNS-RAWVCVSDDFDILRISKAILESI 235 (1422)
Q Consensus 162 ~~~vgr~~~~~~i~~~l~~~~~~~~~i~i----G~GKTtLa~~v~~~~~~~~-f~~-~~wv~~~~~~~~~~~~~~i~~~l 235 (1422)
...|||+++++++.++|...+. .++|+| |+||||||+++|++.++.. |+. ++|+++++.++...++..++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~-~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCS-SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8778928999999999743589-718999769996679999999971498874899389998289999999999999998
Q ss_pred CCCC---C-CC-------CCHHHHHHHHHHHH---CCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCHHH
Q ss_conf 1888---9-98-------99248999999985---161137993467778911055630247889999679998287389
Q 000559 236 TLSS---C-DF-------KDLNPVQVKLKQEV---AGRKFLIVLDDVWSKNYGLWEVLKSPFMAGAPGSKIIVTTRDENV 301 (1422)
Q Consensus 236 ~~~~---~-~~-------~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~~s~iivTtR~~~v 301 (1422)
+... . .. .+.+.....+++.| .+||+||||||||+. +.|+.+. .||+||||||++.+
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~-------pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN-------LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH-------SSCCEEEECSCSHH
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHHC-------CCEEEEEECCCHHH
T ss_conf 62272102200134679999999999999999850478879987186818--9998647-------98299994437379
Q ss_pred HHHHCCCCCEEECC------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-
Q ss_conf 97618899626099------99935399999984505887432313664389999999970798158999988771189-
Q 000559 302 ALTLGCPGECHNLE------LLSDNDCWSVFKKHAFASREFVASSRLCNSEFVRRKVVEKCKGLPLAARTLGGLLRCKQ- 374 (1422)
Q Consensus 302 ~~~~~~~~~~~~l~------~l~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~~~~~l~~~~- 374 (1422)
+..+... ..+.++ +|+.+|||+||.++. +.. ..+...+ .|+|+||||+++|+.|+.+.
T Consensus 278 a~~l~g~-~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 278 TDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----------PQDLPRE---VLTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp HHHHHHH-SSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----------TTTHHHH---HCCCCHHHHHHHHHHHHHSCS
T ss_pred HHHCCCC-EEEEECCCCCCCCCCHHHHHHHHHHHC-CCC----------HHHHHHH---HHCCCHHHHHHHHHHHHCCCC
T ss_conf 9866897-089946865568969999999999974-998----------8999999---969899999999999848899
Q ss_pred CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 7689999982014699999992599999640595656-679645114799950176999999998098678887314999
Q 000559 375 RDAEWQDILNSNIWDLSDDGEIPAVLQLSYHHLPSHL-KRCFAYCAIFPKDYEFEEKEVVLLWIAEGLIPQSTDYKQLED 453 (1422)
Q Consensus 375 ~~~~w~~~l~~~~~~~~~~~~i~~~l~~s~~~L~~~~-k~~f~~~~~fp~~~~i~~~~l~~~w~~~g~~~~~~~~~~~~~ 453 (1422)
...+|... ....+..++.+||+.|+++. |.||++||+||+++.|+.+.++.+|+++| ++
T Consensus 343 s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp SHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred CHHHHHCC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HH
T ss_conf 79998669---------86189999999998488999999999971779999877999998766778-----------89
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 89799999983223312369965210459999999
Q 000559 454 VGVGYFRDLLSRSIFQQVNGDVSKFVMHDLINDLA 488 (1422)
Q Consensus 454 ~~~~~~~~L~~~~li~~~~~~~~~~~~h~~i~~~~ 488 (1422)
.+..++++|+++||++.. +....|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEE-CCCCEEEEHHHHHHHH
T ss_conf 999999999961988986-8999898609999985
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=312.35 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=51.6
Q ss_pred CCCCEEEECCCCCCCCC-CCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 93009996364567668-0001887755244238655213-722146765536504665555755512222233570852
Q 000559 568 KKLRVLSLRNYYITEVP-NSIRLLTHLRYLNFSGTRICHI-PESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDI 645 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 645 (1422)
+.+++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|+++++|++|++++|......|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 87678878889757737545557766748868877366439777306010688678798563048522078653788870
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCEE
Q ss_conf 2997431025-454222344434604
Q 000559 646 SGQNLITEMP-VGMNKLKCLLTLSNF 670 (1422)
Q Consensus 646 ~~~~~~~~~p-~~~~~L~~L~~L~~~ 670 (1422)
++|. +..++ ..++++++|++|++.
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L~L~ 136 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKLNVA 136 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEEECC
T ss_pred CCCC-CCCCCCCCCCCCCCCCEEECC
T ss_conf 3775-554451134898877989687
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=311.50 Aligned_cols=178 Identities=15% Similarity=0.102 Sum_probs=110.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 4100048766563761378987424899-989999768997047897769422577775450441344588887765333
Q 000559 1187 VPNALHKLVSLDQMYIGNCPSLVSFPDE-RLPNQNLRVIEISRCEELRPLPSGVERLNSLQELDISLCIPASGLPTNLTS 1265 (1422)
Q Consensus 1187 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ls~n~~~~~lp~~L~~ 1265 (1422)
.+..+..+++|+.|++++|......+.. +..+++|+.|++++|......+..+..+++|+.|++++|......++
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 467 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---- 467 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC----
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCC----
T ss_conf 8887347745776878888677756521241765588898989855776877873788788898989988854345----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 31145558654223486887444775599998536210012668764363003546666678937988888656010337
Q 000559 1266 LSIEDLKMPLSCWGLHKLTSLRKLEIRGCPGALSFPEVSVRMRLPTTLTELNIARFPMLHCLSSRGFQNLTSLEYLSISE 1345 (1422)
Q Consensus 1266 L~l~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~ 1345 (1422)
....+..+++|+.|++++|......|. .+..+++|+.|++++| .++...+..+.++++| .|++++
T Consensus 468 ----------~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 468 ----------KTNSLQTLGRLEILVLSFCDLSSIDQH---AFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp ----------SSCGGGGCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCS
T ss_pred ----------CCHHHCCCCCCCEEECCCCCCCCCCHH---HHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCC-EEECCC
T ss_conf ----------431240488766887999966706864---6326567888989898-0686896684756651-898768
Q ss_pred CCCCCCCCCCCC--CCCCCEEECCCCCCHHHHHHCCCCCCC
Q ss_conf 888888889898--887572622499581344311799944
Q 000559 1346 CPRLKSFPWEGL--PSSLQQLYVEDCPQLGANCKRYGPEWS 1384 (1422)
Q Consensus 1346 c~~l~~lp~~~l--~~~L~~L~i~~c~~l~~~~~~~~~~~~ 1384 (1422)
| .++.++...+ .++|+.|++.+||-.+.+...+...|.
T Consensus 533 N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 533 N-HISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp S-CCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred C-CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHH
T ss_conf 9-414268766256778788967799861667757899999
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=297.57 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCCCEEEECCCCCCCC-CCCCCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9300999636456766-80001887755244238655213-722146765536504665555755512222233570852
Q 000559 568 KKLRVLSLRNYYITEV-PNSIRLLTHLRYLNFSGTRICHI-PESVGFLSHLQILLLKDCHRLKKLPTNVENLIDLLYFDI 645 (1422)
Q Consensus 568 ~~Lr~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~n~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 645 (1422)
+.+++|++++|.++.+ |.+|+++++|++|++++|.+..+ |..|+++++|++|++++|......|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCEEEE
Q ss_conf 299743102-545422234443460473
Q 000559 646 SGQNLITEM-PVGMNKLKCLLTLSNFVV 672 (1422)
Q Consensus 646 ~~~~~~~~~-p~~~~~L~~L~~L~~~~~ 672 (1422)
++|. +..+ |..++++++|++|++..+
T Consensus 113 ~~n~-i~~l~~~~~~~l~~L~~L~L~~n 139 (606)
T 3t6q_A 113 IQTG-ISSIDFIPLHNQKTLESLYLGSN 139 (606)
T ss_dssp TTSC-CSCGGGSCCTTCTTCCEEECCSS
T ss_pred CCCC-CCCCCCCHHCCCCCCCEEECCCC
T ss_conf 1267-66578101223782238988798
Done!